Psyllid ID: psy9060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTASLPCER
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEcccHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHccHHHHHHHHHccccccHHHHHHcccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHcHcccccccccHHHHHccHHcccHHHHHHcccccccccHHHccccEEEEEEcccEEEEEEcccccHHHcccHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEcccHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcEEEEcHHHHHHHHccEEEEEcccEEEccHHHHcHHHHccEEEEEcccEEEcHHHHHccccccccccHHHHHHcHHHHHHHHHHcccEEHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHccccHHHccccEEEEccccccc
Coil and Loop (DISEMBL)
msgglypaplkILDVVRTgiekgpsagyeaeaegfsqlamtpqskglMGLFRAQTEckknstkhfkekaVGDVLVVTldspgvkvnslNSEVMSEIQSILRRIQsdssirsaviisgkpgcfiagADISMLAACKTADQVKQISKSGQQILSEiesspkpiVAAISGSCLGGGLEVALACHYRIAVkdkktglglpeVALACHYRIVVkdkktglglpevmlgllpgaggtqrlpkltalpnvldmtltgktlkadkakkmgivdqlveplgpglnhpeerTMEYLEEVAVNTASQLasgklkinrikpmipdkvLDVALKFEFVRNQIFGKAKEKVMKmsgglypaplkskqglifftaslpcer
Flexible Loop (DISEMBL)
msgglypaplkILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKnstkhfkekavgdVLVVTLDspgvkvnslnseVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKtlkadkakkmGIVDQlveplgpglnhPEERTMEYLEEVAVNTASqlasgklkinrikpmipdKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLypaplkskqglIFFTASLPCER
Low Complexity Region (SEG)
MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTASLPCER
Disordered region (IsUnstruct)
*******APLKILDVVRTGI****************************GLFRA**********HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV*******************PIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPL************EYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTAS*****
Disordered Region (DISOPRED)
MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT*DQV*QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA*************PDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTASLPC**
Disordered Region (DISEMBL)
MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK***********GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTASLPCER
Disordered Region (DISPRO)
**GGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTASLPCE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTASLPCER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q64428	763	Trifunctional enzyme subu	yes	N/A	0.729	0.349	0.527	6e-83
Q8BMS1	763	Trifunctional enzyme subu	yes	N/A	0.721	0.346	0.529	8e-83
P40939	763	Trifunctional enzyme subu	yes	N/A	0.721	0.346	0.547	2e-82
Q29554	763	Trifunctional enzyme subu	yes	N/A	0.721	0.346	0.543	1e-81
Q8FFG4	714	Fatty acid oxidation comp	yes	N/A	0.478	0.245	0.461	4e-47
A8ADP2	715	Fatty acid oxidation comp	yes	N/A	0.478	0.244	0.467	1e-46
B7LBJ5	714	Fatty acid oxidation comp	yes	N/A	0.478	0.245	0.451	2e-46
B7M6M2	714	Fatty acid oxidation comp	yes	N/A	0.478	0.245	0.451	2e-46
B7UFZ8	714	Fatty acid oxidation comp	yes	N/A	0.478	0.245	0.451	2e-46
Q1R972	714	Fatty acid oxidation comp	yes	N/A	0.478	0.245	0.451	2e-46

>sp|Q64428|ECHA_RAT Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus GN=Hadha PE=1 SV=2

 Score =  308 bits (788), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 153/290 (52%), Positives = 200/290 (68%), Gaps = 23/290 (7%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           S  H      GDV V+ ++SP  KVN+LN EV SE   ++  I ++  IRSAV+IS KPG
Sbjct: 37  SRTHINYGVKGDVAVIRINSPNSKVNTLNKEVQSEFVEVMNEIWANDQIRSAVLISSKPG 96

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           CF+AGADI+MLA+C T  +  +IS+ GQ++  ++E SPKP+VAAISGSCLGGGLE+A+AC
Sbjct: 97  CFVAGADINMLASCTTPQEAARISQEGQKMFEKLEKSPKPVVAAISGSCLGGGLELAIAC 156

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
            YRIA KD+K                      T LG+PEV+LG+LPGAGGTQRLPK+  +
Sbjct: 157 QYRIATKDRK----------------------TVLGVPEVLLGILPGAGGTQRLPKMVGV 194

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           P   DM LTG+ ++AD+AKKMG+VDQLV+PLGPG+  PEERT+EYLEEVAVN A  LA  
Sbjct: 195 PAAFDMMLTGRNIRADRAKKMGLVDQLVDPLGPGIKSPEERTIEYLEEVAVNFAKGLADR 254

Query: 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           K+   + K ++ +K+   A+   FVR Q++   +EKV K + GLYPAPLK
Sbjct: 255 KVSAKQSKGLM-EKLTSYAMTIPFVRQQVYKTVEEKVKKQTKGLYPAPLK 303

Bifunctional subunit.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 1

>sp|Q8BMS1|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus GN=Hadha PE=1 SV=1

 Score =  307 bits (787), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 152/287 (52%), Positives = 199/287 (69%), Gaps = 23/287 (8%)

Query: 64  HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFI 123
           H      GDV V+ ++SP  KVN+LN EV SE   ++  I ++  IRSAV+IS KPGCF+
Sbjct: 40  HINYGVKGDVAVIRINSPNSKVNTLNKEVQSEFIEVMNEIWANDQIRSAVLISSKPGCFV 99

Query: 124 AGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           AGADI+ML++C T  +  +IS+ GQ++  ++E SPKP+VAAISGSCLGGGLE+A+AC YR
Sbjct: 100 AGADINMLSSCTTPQEATRISQEGQRMFEKLEKSPKPVVAAISGSCLGGGLELAIACQYR 159

Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
           IA KD+K                      T LG+PEV+LG+LPGAGGTQRLPK+  +P  
Sbjct: 160 IATKDRK----------------------TVLGVPEVLLGILPGAGGTQRLPKMVGVPAA 197

Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 303
            DM LTG+ ++AD+AKKMG+VDQLVEPLGPG+  PEERT+EYLEEVAVN A  LA  K+ 
Sbjct: 198 FDMMLTGRNIRADRAKKMGLVDQLVEPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVS 257

Query: 304 INRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
             + K ++ +K+   A+   FVR Q++   +EKV K + GLYPAPLK
Sbjct: 258 AKQSKGLV-EKLTTYAMTVPFVRQQVYKTVEEKVKKQTKGLYPAPLK 303

Bifunctional subunit.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/287 (54%), Positives = 199/287 (69%), Gaps = 23/287 (8%)

Query: 64  HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFI 123
           H      GDV VV ++SP  KVN+L+ E+ SE   ++  I +   IRSAV+IS KPGCFI
Sbjct: 40  HINYGVKGDVAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFI 99

Query: 124 AGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           AGADI+MLAACKT  +V Q+S+  Q+I+ ++E S KPIVAAI+GSCLGGGLEVA++C YR
Sbjct: 100 AGADINMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYR 159

Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
           IA KD+K                      T LG PEV+LG LPGAGGTQRLPK+  +P  
Sbjct: 160 IATKDRK----------------------TVLGTPEVLLGALPGAGGTQRLPKMVGVPAA 197

Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 303
           LDM LTG++++AD+AKKMG+VDQLVEPLGPGL  PEERT+EYLEEVA+  A  LA  K+ 
Sbjct: 198 LDMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKIS 257

Query: 304 INRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
             R K ++ +K+   A+   FVR Q++ K +EKV K + GLYPAPLK
Sbjct: 258 PKRDKGLV-EKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLK 303

Bifunctional subunit.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q29554|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1

 Score =  303 bits (777), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/287 (54%), Positives = 196/287 (68%), Gaps = 23/287 (8%)

Query: 64  HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFI 123
           H      GDV V+ ++SP  KVN+L  E+ SE   ++  + S S IRSAV+IS KPGCFI
Sbjct: 40  HINYGVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFI 99

Query: 124 AGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           AGADI+ML+AC T+ +V QIS+  Q+   ++E S KPIVAAI+G+CLGGGLE+A++C YR
Sbjct: 100 AGADINMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYR 159

Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
           IA KDKK                      T LG PEV+LG+LPGAGGTQRLPK+  +P  
Sbjct: 160 IATKDKK----------------------TVLGAPEVLLGILPGAGGTQRLPKMVGVPAA 197

Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK 303
            DM LTG+ ++ADKAKKMG+VDQLVEPLGPGL  PEERT+EYLEEVAV  A  LA  K+ 
Sbjct: 198 FDMMLTGRGIRADKAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAVTFAKGLADKKIS 257

Query: 304 INRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
             R K ++ +K+   A+   FVR QI+ K +EKV K + GLYPAPLK
Sbjct: 258 PKRDKGLV-EKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLK 303

Bifunctional subunit; cannot use crotonyl-CoA or 3-hydroxybutyryl-CoA as substrate.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q8FFG4|FADJ_ECOL6 Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fadJ PE=3 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 134/197 (68%), Gaps = 22/197 (11%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
           ++ V+T+D PG K+N+L +E  S++++I+++++ +  +R  V IS KP  FIAGADI+M+
Sbjct: 15  NIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKDLRGVVFISAKPDNFIAGADINMI 74

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
           A CKTA + + +++ GQQ+++EI + P P++AAI G+CLGGGLE+ALACH R+   D KT
Sbjct: 75  ANCKTAQEAEALARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDPKT 134

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
            L                      GLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK
Sbjct: 135 VL----------------------GLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGK 172

Query: 252 TLKADKAKKMGIVDQLV 268
            L+A +A K+G+VD +V
Sbjct: 173 QLRAKQALKLGLVDDVV 189

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A8ADP2|FADJ_CITK8 Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadJ PE=3 SV=1

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 134/197 (68%), Gaps = 22/197 (11%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
           +V VV++D PG K+N+L +E  +++++IL++I+ + ++R  V IS KP  FIAGADI+M+
Sbjct: 15  NVAVVSIDVPGEKMNTLKAEFATQVRAILKQIRENKALRGVVFISAKPDNFIAGADINMI 74

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
             CK+A + + +++ GQQI++EI++   P+VAAI G+CLGGGLE+ALACH RI   D KT
Sbjct: 75  GNCKSAQEAETLARQGQQIMAEIQALSVPVVAAIHGACLGGGLEMALACHRRICTDDAKT 134

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
            L                      GLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK
Sbjct: 135 VL----------------------GLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGK 172

Query: 252 TLKADKAKKMGIVDQLV 268
            L+  +A ++G+VD++V
Sbjct: 173 QLRPKQALRVGLVDEVV 189

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|B7LBJ5|FADJ_ECO55 Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain 55989 / EAEC) GN=fadJ PE=3 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 133/197 (67%), Gaps = 22/197 (11%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
           ++ V+T+D PG K+N+L +E  S++++I+++++ +  +R  V +S KP  FIAGADI+M+
Sbjct: 15  NIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMI 74

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
             CKTA + + +++ GQQ+++EI + P P++AAI G+CLGGGLE+ALACH R+   D KT
Sbjct: 75  GNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKT 134

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
            L                      GLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK
Sbjct: 135 VL----------------------GLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGK 172

Query: 252 TLKADKAKKMGIVDQLV 268
            L+A +A K+G+VD +V
Sbjct: 173 QLRAKQALKLGLVDDVV 189

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli (strain 55989 / EAEC) (taxid: 585055)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|B7M6M2|FADJ_ECO8A Fatty acid oxidation complex subunit alpha OS=Escherichia coli O8 (strain IAI1) GN=fadJ PE=3 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 133/197 (67%), Gaps = 22/197 (11%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
           ++ V+T+D PG K+N+L +E  S++++I+++++ +  +R  V +S KP  FIAGADI+M+
Sbjct: 15  NIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMI 74

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
             CKTA + + +++ GQQ+++EI + P P++AAI G+CLGGGLE+ALACH R+   D KT
Sbjct: 75  GNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKT 134

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
            L                      GLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK
Sbjct: 135 VL----------------------GLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGK 172

Query: 252 TLKADKAKKMGIVDQLV 268
            L+A +A K+G+VD +V
Sbjct: 173 QLRAKQALKLGLVDDVV 189

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O8 (strain IAI1) (taxid: 585034)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|B7UFZ8|FADJ_ECO27 Fatty acid oxidation complex subunit alpha OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fadJ PE=3 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 133/197 (67%), Gaps = 22/197 (11%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
           ++ ++T+D PG K+N+L +E  S++++I+++I+ +  +R  V +S KP  FIAGADI+M+
Sbjct: 15  NIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMI 74

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
             CKTA + + +++ GQQ+++EI + P P++AAI G+CLGGGLE+ALACH R+   D KT
Sbjct: 75  GNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKT 134

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
            L                      GLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK
Sbjct: 135 VL----------------------GLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGK 172

Query: 252 TLKADKAKKMGIVDQLV 268
            L+A +A K+G+VD +V
Sbjct: 173 QLRAKQAVKLGLVDDVV 189

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O127:H6 (strain E2348/69 / EPEC) (taxid: 574521)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q1R972|FADJ_ECOUT Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=fadJ PE=3 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 133/197 (67%), Gaps = 22/197 (11%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
           ++ ++T+D PG K+N+L +E  S++++I+++I+ +  +R  V +S KP  FIAGADI+M+
Sbjct: 15  NIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMI 74

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
             CKTA + + +++ GQQ+++EI + P P++AAI G+CLGGGLE+ALACH R+   D KT
Sbjct: 75  GNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKT 134

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
            L                      GLPEV LGLLPG+GGTQRLP+L  +   L+M LTGK
Sbjct: 135 VL----------------------GLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGK 172

Query: 252 TLKADKAKKMGIVDQLV 268
            L+A +A K+G+VD +V
Sbjct: 173 QLRAKQAVKLGLVDDVV 189

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli (strain UTI89 / UPEC) (taxid: 364106)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
91083819	761	PREDICTED: similar to hydroxyacyl-coenzy	0.726	0.349	0.631	2e-98
350404620	764	PREDICTED: trifunctional enzyme subunit	0.732	0.350	0.589	5e-93
157140862	741	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.726	0.358	0.579	4e-92
158297504	771	AGAP007784-PA [Anopheles gambiae str. PE	0.726	0.345	0.586	5e-92
157125238	770	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.726	0.345	0.579	5e-92
340720960	764	PREDICTED: trifunctional enzyme subunit	0.732	0.350	0.579	1e-90
170073935	744	fatty acid oxidation complex subunit alp	0.732	0.360	0.579	8e-90
312384727	772	hypothetical protein AND_01710 [Anophele	0.732	0.347	0.565	3e-89
270007934	697	hypothetical protein TcasGA2_TC014680 [T	0.644	0.338	0.627	4e-87
391345766	757	PREDICTED: LOW QUALITY PROTEIN: trifunct	0.748	0.361	0.552	7e-86

>gi|91083819|ref|XP_973530.1| PREDICTED: similar to hydroxyacyl-coenzyme A dehydrogenase [Tribolium castaneum]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/288 (63%), Positives = 223/288 (77%), Gaps = 22/288 (7%)

Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           KH K K V ++ V+ LDSPGVKVNSLN EVM E  S+L  I+S+  I++AV+IS KP CF
Sbjct: 35  KHTKLKVVDNIGVIVLDSPGVKVNSLNGEVMGEFGSVLHEIESNPQIQAAVLISAKPNCF 94

Query: 123 IAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
           IAGADI+ML  C++A++  +IS+ GQ++L+ IESS KPIVAAI GSCLGGGLEVAL+C  
Sbjct: 95  IAGADITMLEKCQSAEEATKISREGQEMLAAIESSNKPIVAAIQGSCLGGGLEVALSC-- 152

Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
                               HYRI VKDKKTGLGLPEVMLGLLPGAGGTQRLP+L+ +PN
Sbjct: 153 --------------------HYRIAVKDKKTGLGLPEVMLGLLPGAGGTQRLPRLSTVPN 192

Query: 243 VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302
            LDM+LTGKTLKAD+AKKMGIVD LV+PLGPGL  PE  T +YLE VAV+ A QLASGKL
Sbjct: 193 ALDMSLTGKTLKADRAKKMGIVDLLVDPLGPGLGEPETVTRQYLESVAVDVAKQLASGKL 252

Query: 303 KINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           K++R K  + D++L+ AL++ +V++QIFGKAK +VMKMSGGLYPAPL+
Sbjct: 253 KVDRKKSQLTDRLLEFALQYNWVKDQIFGKAKAQVMKMSGGLYPAPLR 300

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404620|ref|XP_003487165.1| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Bombus impatiens]

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 171/290 (58%), Positives = 213/290 (73%), Gaps = 22/290 (7%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           +TKH + K V +V V+TLDSPGVKVN+LN E+M EI  +L+ +Q +S++ S V+ISGKPG
Sbjct: 38  NTKHLRYKVVDNVAVLTLDSPGVKVNTLNREIMDEIVDVLKTVQHNSAVNSVVLISGKPG 97

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           CFIAGADI+M+   KT++   +IS  GQ++L  IE S KP+VAAI GSCLGGGLEVA+AC
Sbjct: 98  CFIAGADITMIQRFKTSEDGYKISSDGQKVLETIEKSQKPVVAAIQGSCLGGGLEVAMAC 157

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
                                 HYR+ V D+KT LGLPEVMLGLLPGAGGTQRLP+LT+L
Sbjct: 158 ----------------------HYRLAVNDQKTSLGLPEVMLGLLPGAGGTQRLPQLTSL 195

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           PN LDMTLTGK LKA KAK++G+VD LV  LGPG+  PEE TM YLEE A+  A  LA+G
Sbjct: 196 PNALDMTLTGKNLKAIKAKQVGLVDILVNRLGPGIGTPEENTMRYLEETAIRAAKDLANG 255

Query: 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
            LKI+R    + DKV++ AL +EFV+NQ+F +AK +VMK +GGLYPAPLK
Sbjct: 256 TLKIDRSSKTLMDKVMNFALSYEFVKNQVFTRAKNEVMKKTGGLYPAPLK 305

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157140862|ref|XP_001647675.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|108867146|gb|EAT32343.1| AAEL015524-PA [Aedes aegypti]

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 167/288 (57%), Positives = 216/288 (75%), Gaps = 22/288 (7%)

Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           KH K K V +VLVVTLDSP VKVNSL +EV +E  ++ R ++++S++ SAV+IS KPGCF
Sbjct: 13  KHIKTKVVDNVLVVTLDSPNVKVNSLGAEVQAEFDAVFRDLETNSAVNSAVVISAKPGCF 72

Query: 123 IAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
           +AGADI+ML  CK+A++  +IS  GQ + +++E S KP+VAAI+G CLGGGLE+A+AC  
Sbjct: 73  VAGADITMLEKCKSAEEATKISHEGQLMFNKLEKSRKPVVAAINGVCLGGGLELAMAC-- 130

Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
                               HYRI VKDKKT LGLPEVMLGLLPGAGGTQRLPKL+++P 
Sbjct: 131 --------------------HYRIAVKDKKTNLGLPEVMLGLLPGAGGTQRLPKLSSIPT 170

Query: 243 VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302
            LD+ LTGK +KADKAKK+GIVD LV PLGPGL   E+ T+EYLE+VA+ TA  LAS KL
Sbjct: 171 ALDLALTGKNVKADKAKKLGIVDMLVTPLGPGLKSAEQNTIEYLEKVAIQTAKDLASDKL 230

Query: 303 KINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           K+NR K  + + + D A   ++V++++FGKA+E+VMK+SGGLYPAPLK
Sbjct: 231 KVNRKKSGLVNAITDYAFSIDWVKDKVFGKAREQVMKLSGGLYPAPLK 278

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297504|ref|XP_317731.4| AGAP007784-PA [Anopheles gambiae str. PEST] gi|157015227|gb|EAA12305.4| AGAP007784-PA [Anopheles gambiae str. PEST]

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 169/288 (58%), Positives = 215/288 (74%), Gaps = 22/288 (7%)

Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           KH K + V +V+V+TLDSPGVKVNSLN+EV SE  ++LR ++++ ++ SAV+ISGKPGCF
Sbjct: 43  KHMKTRIVDNVMVITLDSPGVKVNSLNAEVQSEFDAVLREVETNPAVSSAVLISGKPGCF 102

Query: 123 IAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
           +AGADI+ML  CKT +   ++S  GQ   S++E S KP+VAAI+G CLGGGLE+ALAC  
Sbjct: 103 VAGADITMLEQCKTVEAATKVSHEGQIQFSKLEKSRKPVVAAINGVCLGGGLELALAC-- 160

Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
                               HYR+ +KDKKT +GLPEVMLGLLPGAGGTQRLPKLT++P 
Sbjct: 161 --------------------HYRVALKDKKTVVGLPEVMLGLLPGAGGTQRLPKLTSIPT 200

Query: 243 VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302
            LD+ LTGK++KADKAKK+GIVD LV PLGPGL   ++ T+EYLE+VA+  A  LAS KL
Sbjct: 201 ALDLALTGKSVKADKAKKLGIVDMLVNPLGPGLKPADQNTLEYLEQVAIQVAKDLASEKL 260

Query: 303 KINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           K+NR K  +  KV D A   E+V+N++F KA+E+VMKMSGGLYPAPLK
Sbjct: 261 KVNRQKTGLVAKVTDFAFGIEWVKNKVFEKAREQVMKMSGGLYPAPLK 308

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125238|ref|XP_001654257.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|157125240|ref|XP_001654258.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|108873690|gb|EAT37915.1| AAEL010146-PA [Aedes aegypti] gi|108873691|gb|EAT37916.1| AAEL010146-PB [Aedes aegypti]

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 167/288 (57%), Positives = 216/288 (75%), Gaps = 22/288 (7%)

Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           KH K K V +VLVVTLDSP VKVNSL +EV +E  ++ R ++++S++ SAV+IS KPGCF
Sbjct: 42  KHIKTKVVDNVLVVTLDSPNVKVNSLGAEVQAEFDAVFRDLETNSAVNSAVVISAKPGCF 101

Query: 123 IAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
           +AGADI+ML  CK+A++  +IS  GQ + +++E S KP+VAAI+G CLGGGLE+A+AC  
Sbjct: 102 VAGADITMLEKCKSAEEATKISHEGQLMFNKLEKSRKPVVAAINGVCLGGGLELAMAC-- 159

Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
                               HYRI VKDKKT LGLPEVMLGLLPGAGGTQRLPKL+++P 
Sbjct: 160 --------------------HYRIAVKDKKTNLGLPEVMLGLLPGAGGTQRLPKLSSIPT 199

Query: 243 VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL 302
            LD+ LTGK +KADKAKK+GIVD LV PLGPGL   E+ T+EYLE+VA+ TA  LAS KL
Sbjct: 200 ALDLALTGKNVKADKAKKLGIVDLLVTPLGPGLKSAEQNTIEYLEKVAIQTAKDLASDKL 259

Query: 303 KINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           K+NR K  + + + D A   ++V++++FGKA+E+VMK+SGGLYPAPLK
Sbjct: 260 KVNRKKSGLVNAITDYAFSIDWVKDKVFGKAREQVMKLSGGLYPAPLK 307

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720960|ref|XP_003398896.1| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Bombus terrestris]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/290 (57%), Positives = 211/290 (72%), Gaps = 22/290 (7%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           +TKH + K V +V V+TLDSPGVKVN+LN E+M EI  +L+ +Q +S++ S V+ISGKPG
Sbjct: 38  NTKHLRYKVVDNVAVLTLDSPGVKVNTLNREIMDEIVDVLKTVQHNSAVNSVVLISGKPG 97

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           CFIAGADI+M+   KT++   +IS  GQ++L  IE S KP+VAAI GSCLGGGLEVA+AC
Sbjct: 98  CFIAGADITMIQRFKTSEDGYKISSDGQKVLEAIEKSQKPVVAAIQGSCLGGGLEVAMAC 157

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
                                 HYR+ V D+KT LGLPEVMLGLLPGAGGTQRL +LT+L
Sbjct: 158 ----------------------HYRLAVNDQKTNLGLPEVMLGLLPGAGGTQRLSQLTSL 195

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            N LDMTLTGK LKA KAK++G+VD LV  LGPG+  PEE TM YLEE A+  A  LA+G
Sbjct: 196 FNALDMTLTGKNLKAIKAKQVGLVDILVNRLGPGIGTPEENTMRYLEETAIRAAKDLANG 255

Query: 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
            LKI+R    + DKV++ AL +EFV+NQ+F +AK +VM+ +GGLYPAPLK
Sbjct: 256 TLKIDRSPKTLMDKVMNFALSYEFVKNQVFTRAKNEVMRKTGGLYPAPLK 305

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170073935|ref|XP_001870475.1| fatty acid oxidation complex subunit alpha [Culex quinquefasciatus] gi|167870657|gb|EDS34040.1| fatty acid oxidation complex subunit alpha [Culex quinquefasciatus]

 Score =  336 bits (862), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/290 (57%), Positives = 213/290 (73%), Gaps = 22/290 (7%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           + KH K K V  VLVVTLDSPGVKVNSL +EV +E  ++ R ++++ ++ SAV+IS KPG
Sbjct: 14  AAKHIKTKVVDGVLVVTLDSPGVKVNSLGAEVQAEFDAVFRELETNPALSSAVVISAKPG 73

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           CFIAGADI+ML  CKT ++  +IS  GQ   +++E S KPIVAAI+G CLGGGLE+ALAC
Sbjct: 74  CFIAGADITMLEKCKTVEEATKISHEGQLQFNKMEKSRKPIVAAINGVCLGGGLELALAC 133

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
                                  YRI VK KKT LGLPEVMLGLLPGAGGTQRLPKL+++
Sbjct: 134 Q----------------------YRIAVKSKKTNLGLPEVMLGLLPGAGGTQRLPKLSSI 171

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           P  LD+ LTGK +KADKAKK+GIVD LV PLGPGL + E+ T+EYLE+VA+  A  +AS 
Sbjct: 172 PTALDLALTGKNVKADKAKKLGIVDLLVNPLGPGLKNSEDSTIEYLEKVAIQAAKDIASD 231

Query: 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           KLK+NR K  + + V+D A   ++V++++FGKA+E+VMKMSGGLYPAPLK
Sbjct: 232 KLKVNRKKGGLVNGVMDFAFSIDWVKDKVFGKAREQVMKMSGGLYPAPLK 281

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384727|gb|EFR29384.1| hypothetical protein AND_01710 [Anopheles darlingi]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/290 (56%), Positives = 216/290 (74%), Gaps = 22/290 (7%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           ++KH + + V +VLV+TLDSPGVKVNSLN EV +E  +++R ++++ S+ SAV+ISGKPG
Sbjct: 42  TSKHIRTRLVDNVLVITLDSPGVKVNSLNEEVQAEFDAVIREVETNPSVSSAVLISGKPG 101

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           CF+AGADI+ML  CK+ ++  ++S  GQ   S++E S KPIVAAI+G CLGGGLE+ALAC
Sbjct: 102 CFVAGADITMLEKCKSVEEATRVSHEGQIQFSKLEKSRKPIVAAINGVCLGGGLELALAC 161

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
                                  YR+ +KDKKT +GLPEVMLGLLPGAGGTQRLPKLT++
Sbjct: 162 Q----------------------YRVALKDKKTVVGLPEVMLGLLPGAGGTQRLPKLTSI 199

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           P  LD+ LTGK++KADKAKK+GIVD LV PLGPGL   E+ T+EYLE+VA+  A  LAS 
Sbjct: 200 PTALDLALTGKSVKADKAKKLGIVDLLVNPLGPGLKPAEQNTLEYLEQVAIQVAKDLASE 259

Query: 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           KLK++R K  + +KV + A   E+V+ ++F KA+E+VMK+SGGLYPAPLK
Sbjct: 260 KLKVSRQKTGLVNKVTEFAFGIEWVKEKVFAKAREQVMKLSGGLYPAPLK 309

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007934|gb|EFA04382.1| hypothetical protein TcasGA2_TC014680 [Tribolium castaneum]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/258 (62%), Positives = 200/258 (77%), Gaps = 22/258 (8%)

Query: 93  MSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS 152
           M E  S+L  I+S+  I++AV+IS KP CFIAGADI+ML  C++A++  +IS+ GQ++L+
Sbjct: 1   MGEFGSVLHEIESNPQIQAAVLISAKPNCFIAGADITMLEKCQSAEEATKISREGQEMLA 60

Query: 153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKK 212
            IESS KPIVAAI GSCLGGGLEVAL+C                      HYRI VKDKK
Sbjct: 61  AIESSNKPIVAAIQGSCLGGGLEVALSC----------------------HYRIAVKDKK 98

Query: 213 TGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLG 272
           TGLGLPEVMLGLLPGAGGTQRLP+L+ +PN LDM+LTGKTLKAD+AKKMGIVD LV+PLG
Sbjct: 99  TGLGLPEVMLGLLPGAGGTQRLPRLSTVPNALDMSLTGKTLKADRAKKMGIVDLLVDPLG 158

Query: 273 PGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGK 332
           PGL  PE  T +YLE VAV+ A QLASGKLK++R K  + D++L+ AL++ +V++QIFGK
Sbjct: 159 PGLGEPETVTRQYLESVAVDVAKQLASGKLKVDRKKSQLTDRLLEFALQYNWVKDQIFGK 218

Query: 333 AKEKVMKMSGGLYPAPLK 350
           AK +VMKMSGGLYPAPL+
Sbjct: 219 AKAQVMKMSGGLYPAPLR 236

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391345766|ref|XP_003747154.1| PREDICTED: LOW QUALITY PROTEIN: trifunctional enzyme subunit alpha, mitochondrial-like [Metaseiulus occidentalis]

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 164/297 (55%), Positives = 205/297 (69%), Gaps = 23/297 (7%)

Query: 54  QTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAV 113
           Q    +N  KH   +    V VV +DSPG +VN L+ E+M E+   +  ++S+S+I S V
Sbjct: 20  QFHATRNLNKHLTTEIKNGVAVVKIDSPGARVNVLSKELMLEVNETMANLKSNSAISSVV 79

Query: 114 IISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGG 173
           +ISGK GCFIAGADI+ML +CK+ ++ K++   G ++L EIE  PKP+VAAI GSCLGGG
Sbjct: 80  LISGKKGCFIAGADITMLESCKSVEEAKKLVTDGHKVLQEIEDFPKPVVAAIMGSCLGGG 139

Query: 174 LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR 233
           LE ALACHYRIA+ D KT L                      GLPEVMLG+LPG GGTQR
Sbjct: 140 LETALACHYRIAMNDSKTAL----------------------GLPEVMLGVLPGGGGTQR 177

Query: 234 LPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 293
           LPKL  LP  LDM LTGK+LKA+KAKK G VD ++EPLGPG+   E+R MEYLEEVA N 
Sbjct: 178 LPKLVQLPTALDMMLTGKSLKANKAKKAGFVDVVIEPLGPGVKSAEDRMMEYLEEVACNA 237

Query: 294 ASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           A  LAS KLK+NR +P+  +KVL  AL+F FVR+ IF KAK +VMK++ GLYPAPL+
Sbjct: 238 ARDLASQKLKVNRTRPL-SEKVLAKALQFNFVRDYIFDKAKGQVMKLTNGLYPAPLR 293

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
UNIPROTKB|F1PIP0	747	HADHA "Uncharacterized protein	0.448	0.219	0.590	1.4e-48
UNIPROTKB|P40939	763	HADHA "Trifunctional enzyme su	0.448	0.214	0.584	1.4e-47
FB|FBgn0028479	783	Mtpalpha "Mitochondrial trifun	0.431	0.201	0.616	1.9e-47
UNIPROTKB|B4DYP2	260	HADHA "cDNA FLJ52806, highly s	0.448	0.630	0.584	3.8e-46
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.448	0.215	0.596	4.1e-46
UNIPROTKB|Q29554	763	HADHA "Trifunctional enzyme su	0.448	0.214	0.596	5.6e-46
ZFIN|ZDB-GENE-041111-204	763	hadhab "hydroxyacyl-Coenzyme A	0.448	0.214	0.572	1.2e-45
MGI|MGI:2135593	763	Hadha "hydroxyacyl-Coenzyme A	0.448	0.214	0.572	2e-45
WB|WBGene00020347	781	T08B2.7 [Caenorhabditis elegan	0.450	0.211	0.602	3e-45
RGD|620512	763	Hadha "hydroxyacyl-CoA dehydro	0.448	0.214	0.566	4.4e-45

UNIPROTKB|F1PIP0 HADHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 494 (179.0 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 98/166 (59%), Positives = 123/166 (74%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL E+A++C YRI  KD+KT LG PEV+LG+LPGAGGTQRLPK+  LP   
Sbjct:   125 AISGACLGGGL-ELAISCQYRIATKDRKTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAF 183

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             DM LTG+ ++AD+AK+MG+VDQLVEPLGPGL  PEERT+EYLEEVAVN A  L+  K+ I
Sbjct:   184 DMMLTGRNIRADRAKRMGLVDQLVEPLGPGLKPPEERTIEYLEEVAVNFAKGLSDKKISI 243

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              R K ++ +K+   AL   FVR Q++ K +EKV K + GLYPAPLK
Sbjct:   244 KRDKGLV-EKLTSYALSIPFVRQQVYKKVEEKVRKQTKGLYPAPLK 288

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P40939 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
 Identities = 97/166 (58%), Positives = 122/166 (73%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL EVA++C YRI  KD+KT LG PEV+LG LPGAGGTQRLPK+  +P  L
Sbjct:   140 AINGSCLGGGL-EVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAAL 198

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             DM LTG++++AD+AKKMG+VDQLVEPLGPGL  PEERT+EYLEEVA+  A  LA  K+  
Sbjct:   199 DMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKISP 258

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              R K ++ +K+   A+   FVR Q++ K +EKV K + GLYPAPLK
Sbjct:   259 KRDKGLV-EKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLK 303

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;TAS

GO:0003985 "acetyl-CoA C-acetyltransferase activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0035965 "cardiolipin acyl-chain remodeling" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

FB|FBgn0028479 Mtpalpha "Mitochondrial trifunctional protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 501 (181.4 bits), Expect = 1.9e-47, P = 1.9e-47
 Identities = 98/159 (61%), Positives = 123/159 (77%)

Query:   192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
             G GL E+ALACHYRI  KD KT LGLPEVMLGLLPG GGT RLPKLT++P  LDM LTGK
Sbjct:   158 GGGL-ELALACHYRIATKDSKTKLGLPEVMLGLLPGGGGTVRLPKLTSVPTALDMELTGK 216

Query:   252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMI 311
              ++AD+AK++GIVD LV+PLGPGL   E+ T+EYLE+ AV  A+ LASGKL++NR K  +
Sbjct:   217 QVRADRAKRLGIVDLLVDPLGPGLQPAEQNTIEYLEKTAVQVANDLASGKLRVNREKSGL 276

Query:   312 PDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
               K+    +  +FV+N+IF  A+++V+K S GLYPAPLK
Sbjct:   277 VSKIQSFVMDTDFVKNKIFDTARKQVLKASNGLYPAPLK 315

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISS

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042060 "wound healing" evidence=IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|B4DYP2 HADHA "cDNA FLJ52806, highly similar to Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 97/166 (58%), Positives = 122/166 (73%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL EVA++C YRI  KD+KT LG PEV+LG LPGAGGTQRLPK+  +P  L
Sbjct:    53 AINGSCLGGGL-EVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAAL 111

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             DM LTG++++AD+AKKMG+VDQLVEPLGPGL  PEERT+EYLEEVA+  A  LA  K+  
Sbjct:   112 DMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKISP 171

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              R K ++ +K+   A+   FVR Q++ K +EKV K + GLYPAPLK
Sbjct:   172 KRDKGLV-EKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLK 216

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 473 (171.6 bits), Expect = 4.1e-46, Sum P(2) = 4.1e-46
 Identities = 99/166 (59%), Positives = 117/166 (70%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL E A+AC YRI  K KKT LG PEVMLGLLPGAGGTQRLPK+  LP   
Sbjct:   138 AINGSCLGGGL-EFAIACQYRIATKSKKTVLGTPEVMLGLLPGAGGTQRLPKMVGLPAAF 196

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             DM LTG+ ++ADKAKKMG+V QLV+PLGPGL  PEERT+EYLEEVAV+ A  LA+ K+ +
Sbjct:   197 DMMLTGRNIRADKAKKMGLVHQLVDPLGPGLKSPEERTIEYLEEVAVDFAKGLAAKKVTL 256

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              + K ++  KV D  +    VR QI+     KVMK S GLYPAPLK
Sbjct:   257 EKKKGLM-QKVQDFVMGLSLVRQQIYKTVHGKVMKQSKGLYPAPLK 301

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

UNIPROTKB|Q29554 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 487 (176.5 bits), Expect = 5.6e-46, P = 5.6e-46
 Identities = 99/166 (59%), Positives = 121/166 (72%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL E+A++C YRI  KDKKT LG PEV+LG+LPGAGGTQRLPK+  +P   
Sbjct:   140 AINGTCLGGGL-ELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF 198

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             DM LTG+ ++ADKAKKMG+VDQLVEPLGPGL  PEERT+EYLEEVAV  A  LA  K+  
Sbjct:   199 DMMLTGRGIRADKAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAVTFAKGLADKKISP 258

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              R K ++ +K+   A+   FVR QI+ K +EKV K + GLYPAPLK
Sbjct:   259 KRDKGLV-EKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLK 303

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 470 (170.5 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 95/166 (57%), Positives = 118/166 (71%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL E  +AC YRI  K KKT LG PEVMLGLLPGAGGTQRLPK+  LP+  
Sbjct:   140 AINGSCLGGGL-EFVIACQYRIATKSKKTVLGCPEVMLGLLPGAGGTQRLPKMLGLPSAF 198

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             D+ LTG++++ADKAKKMG+V QLV+ LGPGL  PEERT+EYLEEVAV  A  LA  K+ +
Sbjct:   199 DVMLTGRSIRADKAKKMGLVHQLVDTLGPGLKSPEERTIEYLEEVAVEAARGLAQKKITL 258

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              + K  +  K+ D  + + FVR QI+   ++KVMK + GLYPAPLK
Sbjct:   259 TKEKGWM-QKIQDYVMSYPFVRQQIYNTVEKKVMKQTKGLYPAPLK 303

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]

 Score = 482 (174.7 bits), Expect = 2.0e-45, P = 2.0e-45
 Identities = 95/166 (57%), Positives = 122/166 (73%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL E+A+AC YRI  KD+KT LG+PEV+LG+LPGAGGTQRLPK+  +P   
Sbjct:   140 AISGSCLGGGL-ELAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAF 198

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             DM LTG+ ++AD+AKKMG+VDQLVEPLGPG+  PEERT+EYLEEVAVN A  LA  K+  
Sbjct:   199 DMMLTGRNIRADRAKKMGLVDQLVEPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVSA 258

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              + K ++ +K+   A+   FVR Q++   +EKV K + GLYPAPLK
Sbjct:   259 KQSKGLV-EKLTTYAMTVPFVRQQVYKTVEEKVKKQTKGLYPAPLK 303

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISO

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISO

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

WB|WBGene00020347 T08B2.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 481 (174.4 bits), Expect = 3.0e-45, P = 3.0e-45
 Identities = 100/166 (60%), Positives = 121/166 (72%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL E+ALACHYRI V DKKT L LPEVMLGLLPGAGGTQRLPKLT + NVL
Sbjct:   158 AIMGSCMGGGL-ELALACHYRIAVNDKKTLLSLPEVMLGLLPGAGGTQRLPKLTTVQNVL 216

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             D+TLTGK +KADKAKK+GIVD++++PLG GL    E T +YLEE+AV  A +LA+GKLKI
Sbjct:   217 DLTLTGKKIKADKAKKIGIVDRVIQPLGDGLGPAAENTHKYLEEIAVKAAQELANGKLKI 276

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
             NR K  +      V     F+ N +   AK+K+MK++ G YPAPLK
Sbjct:   277 NRDKGFMHKATQAVMTNSLFLDNVVLKMAKDKLMKLTAGNYPAPLK 322

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

RGD|620512 Hadha "hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 479 (173.7 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 94/166 (56%), Positives = 122/166 (73%)

Query:   185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             A+     G GL E+A+AC YRI  KD+KT LG+PEV+LG+LPGAGGTQRLPK+  +P   
Sbjct:   140 AISGSCLGGGL-ELAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAF 198

Query:   245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
             DM LTG+ ++AD+AKKMG+VDQLV+PLGPG+  PEERT+EYLEEVAVN A  LA  K+  
Sbjct:   199 DMMLTGRNIRADRAKKMGLVDQLVDPLGPGIKSPEERTIEYLEEVAVNFAKGLADRKVSA 258

Query:   305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
              + K ++ +K+   A+   FVR Q++   +EKV K + GLYPAPLK
Sbjct:   259 KQSKGLM-EKLTSYAMTIPFVRQQVYKTVEEKVKKQTKGLYPAPLK 303

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IMP;IDA

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISO;IDA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IDA;TAS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=IMP

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40939	ECHA_HUMAN	1, ., 1, ., 1, ., 2, 1, 1	0.5470	0.7213	0.3460	yes	N/A
Q64428	ECHA_RAT	1, ., 1, ., 1, ., 2, 1, 1	0.5275	0.7295	0.3499	yes	N/A
Q8BMS1	ECHA_MOUSE	1, ., 1, ., 1, ., 2, 1, 1	0.5296	0.7213	0.3460	yes	N/A
Q29554	ECHA_PIG	1, ., 1, ., 1, ., 2, 1, 1	0.5435	0.7213	0.3460	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	366
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	1e-122
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-83
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	4e-65
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	4e-58
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	5e-56
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	5e-54
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	3e-43
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	6e-38
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	5e-36
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	2e-33
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	3e-32
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	2e-30
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	8e-30
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	6e-29
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	7e-29
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	9e-29
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	3e-27
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	5e-26
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	3e-23
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	3e-23
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	2e-22
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	2e-22
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	3e-22
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	7e-22
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	1e-21
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	2e-21
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-21
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	2e-20
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	3e-19
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	7e-19
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	9e-19
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-18
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	1e-18
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	4e-18
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	2e-17
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	2e-16
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	3e-16
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	3e-16
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	3e-16
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	8e-16
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	1e-15
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	3e-15
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	4e-15
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	5e-15
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	7e-15
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	1e-14
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	1e-14
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	1e-14
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	7e-14
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	8e-14
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	3e-13
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	5e-13
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	6e-13
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	7e-13
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	4e-12
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	8e-12
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	1e-11
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	1e-11
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	1e-11
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	2e-11
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	2e-11
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	9e-11
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	2e-10
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	3e-09
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	5e-09
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	6e-09
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	1e-08
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	2e-08
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	2e-07
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	4e-07
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	4e-06
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	9e-06
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	2e-05
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	8e-05
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	1e-04
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-04
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	2e-04
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	4e-04
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	4e-04
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	6e-04
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	0.001
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	0.002

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  369 bits (949), Expect = e-122
 Identities = 166/290 (57%), Positives = 207/290 (71%), Gaps = 23/290 (7%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           +  H   +  GDV VV +DSP  KVN+L+ E+ +E + ++  + ++ +I+SAV+ISGKPG
Sbjct: 11  ARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPG 70

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
            F+AGADI M+AACKTA +V Q+S+ GQ++   IE S KPIVAAISGSCLGGGLE+ALAC
Sbjct: 71  SFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALAC 130

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
           HYRIA                       KD+KT LGLPEVMLGLLPGAGGTQRLPKLT +
Sbjct: 131 HYRIA----------------------TKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV 168

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           P  LDM LTGK ++AD+AKKMGIVDQLV+PLGPGL   EE T+EYLEEVAV  A  LA+G
Sbjct: 169 PAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228

Query: 301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           KL INR K ++  K+    +   FVR Q++  A++KVMK + GLYPAPLK
Sbjct: 229 KLSINRDKGLV-HKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLK 277

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  267 bits (685), Expect = 1e-83
 Identities = 118/278 (42%), Positives = 167/278 (60%), Gaps = 43/278 (15%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           + V+T+D PG K+N+L +E   ++++IL++++ D  ++  V ISGKP  FIAGADI+MLA
Sbjct: 16  IAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLA 75

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           ACKTA + + +++ GQQ+ +EIE+ P P+VAAI G+CLGGGLE+ALACHYR+        
Sbjct: 76  ACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVC------- 128

Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                            D KT LGLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK 
Sbjct: 129 ---------------TDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQ 173

Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIP 312
           L+A +A K+G+VD +V         P       L EVAV  A      K K  R    + 
Sbjct: 174 LRAKQALKLGLVDDVV---------PH----SILLEVAVELAK-----KGKPARRPLPVR 215

Query: 313 DKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           +++L+        R  +F +A++K +  + G YPAP +
Sbjct: 216 ERLLE---GNPLGRALLFKQARKKTLAKTQGNYPAPER 250

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  218 bits (557), Expect = 4e-65
 Identities = 112/276 (40%), Positives = 159/276 (57%), Gaps = 43/276 (15%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           + ++T+D PG K+N+L +E   ++  IL +++ D SIR  V++SGKP  FIAGADISMLA
Sbjct: 11  IAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLA 70

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           AC+TA + K +++ GQ + +E+E+ P P+VAAI G+CLGGGLE+ALACH R+        
Sbjct: 71  ACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVC------- 123

Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                            D KT LGLPEV LGLLPG+GGTQRLP+L  +   LDM LTGK 
Sbjct: 124 ---------------SDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQ 168

Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIP 312
           L+A +A K+G+VD +V P                  + ++TA ++A     I +   +  
Sbjct: 169 LRAKQALKLGLVDDVV-PQ----------------SILLDTAVEMALKGKPIRKPLSLQE 211

Query: 313 DKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 348
             +    L     R  +F +A +K  K + G YPA 
Sbjct: 212 RLLEGTPLG----RALLFDQAAKKTAKKTQGNYPAA 243

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  188 bits (480), Expect = 4e-58
 Identities = 101/284 (35%), Positives = 149/284 (52%), Gaps = 56/284 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V V+ LD P   VN+L++E+++E+   L +++ D S++ A++++G PG F AGADI  
Sbjct: 6   AGVAVIKLDRPE-AVNALSAELLTELIQALEKLEQDPSVK-AIVLTGGPGAFSAGADIKE 63

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +AA   A Q  Q S   Q + S +E  PKP++AA++G  LGGGLE+ALAC YRIA  + K
Sbjct: 64  MAAEPLAQQ-AQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    GLPEV LG++PGAGGTQRLP++  +   L+M LTG
Sbjct: 123 ------------------------FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTG 158

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG-KLKINRIKP 309
           + ++A +A KMG+VD++V         PEE+    L E A+  A +LA    L +  +K 
Sbjct: 159 RRIRAQEALKMGLVDKVV---------PEEQ----LVEEAIELAQRLADKPPLALAALKA 205

Query: 310 MIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQ 353
            +                     A  +V   +  LYPAP  +  
Sbjct: 206 AM---------------RAALEDALPEVRAQALRLYPAPFSTDD 234

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  181 bits (461), Expect = 5e-56
 Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 32/220 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  +TL+ P  K N+L+ E++ E+ + L   ++D  +R  V+++G    F AGAD+  
Sbjct: 7   GGVATITLNRPE-KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKE 64

Query: 131 LAACKTA-DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
           LAA   A ++ +   +  Q++L  +   PKP++AA++G+ LGGGLE+ALAC  RIA +D 
Sbjct: 65  LAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED- 123

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                                     GLPEV LGL+PG GGTQRLP+L       ++ LT
Sbjct: 124 -----------------------AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLT 160

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV 289
           G+ + A++A ++G+VD++V              +E    +
Sbjct: 161 GRRISAEEALELGLVDEVVPD-----EELLAAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  178 bits (453), Expect = 5e-54
 Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 32/277 (11%)

Query: 62  TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
            +    +    + V+TL+ P    N+LN E++ E+   L   ++D  +R  V+++G    
Sbjct: 4   YETILVEREDGIAVITLNRPEKL-NALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKA 61

Query: 122 FIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACH 181
           F AGAD+  L + +  +  + + + GQ +L  +   PKP++AA++G  LGGGLE+ALAC 
Sbjct: 62  FSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACD 121

Query: 182 YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALP 241
            RIA +D K                         GLPEV LGLLPG GGTQRLP+L    
Sbjct: 122 IRIAAEDAK------------------------FGLPEVNLGLLPGDGGTQRLPRLLGRG 157

Query: 242 NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
              ++ LTG+ + A +A ++G+VD++V           ER +E    +A    + LA+ K
Sbjct: 158 RAKELLLTGEPISAAEALELGLVDEVVPDAE----ELLERALELARRLAAPPLA-LAATK 212

Query: 302 LKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVM 338
             +         + L+      F R       +E V 
Sbjct: 213 RLVRAALEADLAEALEAEAL-AFARLFSSEDFREGVR 248

Length = 257

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score =  150 bits (380), Expect = 3e-43
 Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 40/237 (16%)

Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           K    +    V V+TL+ P    N+L+S+V+ E+  +L +++ D ++R  V+I G+   F
Sbjct: 2   KFLSVRVEDHVAVITLNHP--PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFF 58

Query: 123 IAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
            AGADI    +   A+Q  ++++ GQ     +E   KP++AAI G+ LGGGLE+A++CH 
Sbjct: 59  SAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHI 118

Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
           R A +  K                        LGLPE+ LGL+PG  GTQRLP+      
Sbjct: 119 RFATESAK------------------------LGLPELNLGLIPGFAGTQRLPRYVGKAK 154

Query: 243 VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
            L+M LT + +   +A K G+V+ +          PEE     L++ A   A ++A 
Sbjct: 155 ALEMMLTSEPITGAEALKWGLVNGV---------FPEE---TLLDD-AKKLAKKIAG 198

Length = 257

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  143 bits (364), Expect = 6e-38
 Identities = 83/282 (29%), Positives = 123/282 (43%), Gaps = 74/282 (26%)

Query: 85  VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI----SMLAACKTADQV 140
           VN L+   ++ +   L  +++ S ++  ++ S K   FI GADI    S+ AA    +++
Sbjct: 28  VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKD-AFIVGADITEFLSLFAA--PEEEL 84

Query: 141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVAL 200
            Q       I + +E  P P VAAI+G  LGGG E  LA  YR+A               
Sbjct: 85  SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVA--------------- 129

Query: 201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKK 260
                         +GLPE  LG++PG GGT RLP+L    N L+    GK ++A+ A K
Sbjct: 130 ---------SPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALK 180

Query: 261 MGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK-------------LKINRI 307
           +G VD +V P             E L+E A+    Q  +GK             LK+++I
Sbjct: 181 VGAVDAVVAP-------------EKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKI 227

Query: 308 KPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPL 349
           + M+                  F  AK  V + +G  YPAP+
Sbjct: 228 EAMM-----------------SFTTAKGMVAQKAGKHYPAPM 252

Length = 715

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  131 bits (331), Expect = 5e-36
 Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 33/235 (14%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISML 131
           V+ +TL+ P    N+L+  ++ E+Q+IL +I  ++++R  VI++G     F AGAD+   
Sbjct: 14  VVKITLNRPR-AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKER 71

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
           A     +QV+      +  +  +E  P+P++AAI+G  LGGGLE+ALAC +RIA +    
Sbjct: 72  AGMNE-EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES--- 127

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
                                  LGL E  L ++PGAGGTQRLP+L  +    ++  TG+
Sbjct: 128 ---------------------ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGR 166

Query: 252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
            + A +AK++G+V+ +V       +  EE+ +E  E++A N    +   K  I+ 
Sbjct: 167 RISAQEAKEIGLVEFVVPA-----HLLEEKAIEIAEKIASNGPIAVRQAKEAISN 216

Length = 260

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  124 bits (314), Expect = 2e-33
 Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 26/200 (13%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G + VVT++ P   +N+LNSE + E+ ++L  I++D ++ + ++       F+AGADIS 
Sbjct: 12  GHIAVVTINRPKA-LNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISE 70

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +      ++ ++    G ++  ++E+  KP++AAI+G  LGGG E+++AC  RIA +  K
Sbjct: 71  MKD-LNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAK 129

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    G PEV LG+ PG GGTQRL ++       ++  TG
Sbjct: 130 ------------------------FGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTG 165

Query: 251 KTLKADKAKKMGIVDQLVEP 270
             + A++A ++G+V+++VEP
Sbjct: 166 DMINAEEALRIGLVNKVVEP 185

Length = 260

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  121 bits (305), Expect = 3e-32
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 41/230 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             VL +T++ P  K N+L + +   +   L    +D ++R  V+++G    F AG DI  
Sbjct: 13  DGVLTITINRPD-KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIK- 69

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
               K   +         + L  I + PKP+VAA++G  +G G+ +ALAC    A +  K
Sbjct: 70  -DFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAK 128

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                     LP   LGL P AGG+  LP+L       +M L G
Sbjct: 129 ------------------------FSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLG 164

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           + L A++A ++G+V+++V                 L+  A   A++LA+G
Sbjct: 165 EPLSAEEALRIGLVNRVVPA-------------AELDAEADAQAAKLAAG 201

Length = 259

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score =  116 bits (292), Expect = 2e-30
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 38/224 (16%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL++TL+ P  + N+LN+ +++++ + L    +D+SI    +I+G    F AGAD++ +A
Sbjct: 12  VLLLTLNRPEAR-NALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMA 69

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
                D    ++    Q+   +++  KP++AA++G  LG G E+AL C   IA ++ +  
Sbjct: 70  ---EKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENAR-- 124

Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                                  GLPE+ LG++PGAGGTQRL +         M LTG++
Sbjct: 125 ----------------------FGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGES 162

Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ 296
           + A +A++ G+V ++          P E T+E   ++A   A  
Sbjct: 163 ITAQQAQQAGLVSEV---------FPPELTLERALQLASKIARH 197

Length = 255

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  114 bits (288), Expect = 8e-30
 Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 29/200 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V ++TL+ P   +N+LN  +M E+ + L    +D  I  A++I+G    F AGADI  
Sbjct: 12  GRVGLITLNRPKA-LNALNDALMDELGAALAAFDADEGI-GAIVITGSEKAFAAGADIKE 69

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +A     D  K    +  + ++ I    KP++AA++G  LGGG E+A+ C   IA    K
Sbjct: 70  MADLSFMDVYKGDYITNWEKVARIR---KPVIAAVAGYALGGGCELAMMCDIIIAADTAK 126

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    G PE+ LG+LPG GG+QRL +       +D+ LTG
Sbjct: 127 ------------------------FGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTG 162

Query: 251 KTLKADKAKKMGIVDQLVEP 270
           + + A +A++ G+V ++V  
Sbjct: 163 RMMDAAEAERAGLVSRVVPA 182

Length = 257

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score =  112 bits (281), Expect = 6e-29
 Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 26/196 (13%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           ++ + LD P  K N++  E++  ++S   +IQ+D+S R  ++ S  PG F AGAD+    
Sbjct: 5   IVELRLDRPEAK-NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
               ++ V++   S +   S +E+   P +A + G+ LGGGLE+AL+C  RI  ++    
Sbjct: 64  KMSPSE-VQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAV-- 120

Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                                  GLPE  L ++PGAGGTQRLP+L       ++  TG+ 
Sbjct: 121 ----------------------FGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRR 158

Query: 253 LKADKAKKMGIVDQLV 268
           + A +A  MG+V+  V
Sbjct: 159 IGAREAASMGLVNYCV 174

Length = 251

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score =  112 bits (281), Expect = 7e-29
 Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 34/224 (15%)

Query: 70  VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
            G V  + L+ P  K N+LN  +++ +++   R+     +R AV++ G+   F AG D+S
Sbjct: 9   DGGVATIGLNRPA-KRNALNDGLIAALRAAFARLPEG--VR-AVVLHGEGDHFCAGLDLS 64

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
            L   + A +    S+   ++  +I+    P++AA+ G+ +GGGLE+A A H R+A    
Sbjct: 65  ELRE-RDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVA---- 119

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                               D+ T   LPE   G+  G GG+ R+P+L  +  + DM LT
Sbjct: 120 --------------------DESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLT 159

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 293
           G+   A + +++G+   LV   G  L    ++ ME    +A N 
Sbjct: 160 GRVYDAQEGERLGLAQYLVPA-GEAL----DKAMELARRIAQNA 198

Length = 255

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  112 bits (281), Expect = 9e-29
 Identities = 76/262 (29%), Positives = 121/262 (46%), Gaps = 46/262 (17%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
            V ++ L+ P  + N+LN EV  ++      +  D  IR A++++G    F AGADI   
Sbjct: 17  GVALLRLNRPEAR-NALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEF 74

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
           A     +   + +   ++    I   PKP++AA++G  LGGG E                
Sbjct: 75  ATAGAIEMYLRHT---ERYWEAIAQCPKPVIAAVNGYALGGGCE---------------- 115

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
                   LA H  I+V  +    G PE+ +GL+PGAGGTQRL +       + M LTG 
Sbjct: 116 --------LAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGC 167

Query: 252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKPM 310
            + A +A  +G+V ++VE         +E+T+      A+  A ++A    L + +IK +
Sbjct: 168 MVPAPEALAIGLVSEVVE---------DEQTLPR----ALELAREIARMPPLALAQIKEV 214

Query: 311 I---PDKVLDVALKFEFVRNQI 329
           +    D  LD AL  E    Q+
Sbjct: 215 VLAGADAPLDAALALERKAFQL 236

Length = 261

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  112 bits (283), Expect = 3e-27
 Identities = 80/277 (28%), Positives = 121/277 (43%), Gaps = 53/277 (19%)

Query: 79  DSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA--CKT 136
           D+PG  VN  +   ++ +   L  I++ SS++  ++ SGK   FI GADI+         
Sbjct: 23  DAPG-SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALP 80

Query: 137 ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLP 196
             ++ Q       I +++E  P P VAAI+G  LGGG E  LA  +RIA           
Sbjct: 81  DAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIA----------- 129

Query: 197 EVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKAD 256
                        D    +GLPE  LG++PG GGT RLP++    N L+   +GK  +A+
Sbjct: 130 -------------DDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAE 176

Query: 257 KAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL--KINRIKPMIPDK 314
            A K+G VD +V               + L   A+       +GKL  K  R   + P K
Sbjct: 177 DALKVGAVDAVVTA-------------DKLGAAALQLLKDAINGKLDWKAKRQPKLEPLK 223

Query: 315 V--LDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPL 349
           +  ++  + F   +  +   A        G  YPAP+
Sbjct: 224 LSKIEAMMSFTTAKGMVAQVA--------GPHYPAPM 252

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score =  104 bits (262), Expect = 5e-26
 Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 30/204 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
             + ++TL+ P  K+N+LN  ++  + + L  I+ D S+R AVI++G     F AGADI 
Sbjct: 11  DGIALLTLNRPE-KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIH 68

Query: 130 MLA---ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
             +   A      ++   + GQ + + +E+ PKP++AA++G   GGG E+  A H  IA 
Sbjct: 69  EFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIAS 128

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
           +                              PE+ LG+ P  GGTQRLP+L      L++
Sbjct: 129 ERAL------------------------FAKPEIRLGMPPTFGGTQRLPRLAGRKRALEL 164

Query: 247 TLTGKTLKADKAKKMGIVDQLVEP 270
            LTG    A++A ++G+V+ +V  
Sbjct: 165 LLTGDAFSAERALEIGLVNAVVPH 188

Length = 260

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  100 bits (251), Expect = 3e-23
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query: 2   SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 60
           + GLYPAPLKILDVVRTG ++GP AGYEAE++ F +L+MT +SK L+GLF  QT+CKKN
Sbjct: 268 TKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKN 326

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 97.1 bits (242), Expect = 3e-23
 Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 41/230 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G +L +TLD P  K N+++++    +  +    + D  +R A+I       F AG D+  
Sbjct: 11  GSILEITLDRP--KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKA 68

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
            A  +  D        G   L+EI    KP++AA++G   GGG E+ALA  +        
Sbjct: 69  AAEGEAPD--ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADF-------- 118

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                          IV  D  +   LPE  LG++P +GG  RLPK        +M +TG
Sbjct: 119 ---------------IVCADNAS-FALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTG 162

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           + + A++A + GIV+++V         P+   M+   E+    A QL + 
Sbjct: 163 RRMDAEEALRWGIVNRVV---------PQAELMDRAREL----AQQLVNS 199

Length = 261

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 94.9 bits (237), Expect = 2e-22
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 41/241 (17%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  K+N+L+  +  E+ + ++R++ D  IR AVI+SG+ G F AG D+  +A
Sbjct: 13  IADVRLNRPD-KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVA 70

Query: 133 ACKTADQVKQISK-------SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
           +    + VK + K         Q++       P P++AA+ G C GGGL++AL    RIA
Sbjct: 71  S-SPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIA 129

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
             D K                        L + E   GL+P   GT  L  L       +
Sbjct: 130 APDTK------------------------LSIMEAKWGLVPDMAGTVSLRGLVRKDVARE 165

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305
           +T T +   A++A ++G+V  + +        P    +    E+A  +   +A+ K  IN
Sbjct: 166 LTYTARVFSAEEALELGLVTHVSD-------DPLAAALALAREIAQRSPDAIAAAKRLIN 218

Query: 306 R 306
           R
Sbjct: 219 R 219

Length = 262

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 94.8 bits (236), Expect = 2e-22
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 39/242 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
           G +  +T ++P  + N+++ ++   +   L   + D +IR  V+++G     F++GADIS
Sbjct: 19  GGLGRITFNNPA-RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADIS 76

Query: 130 MLAACKTADQV----KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
                ++  +     +Q  ++ Q  L++     KP +A I G C+GGG+ +ALAC  RIA
Sbjct: 77  QFEESRSDAEAVAAYEQAVEAAQAALAD---YAKPTIACIRGYCIGGGMGIALACDIRIA 133

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
            +D +                         G+P   LGL  G  G + L  L       D
Sbjct: 134 AEDSR------------------------FGIPAARLGLGYGYDGVKNLVDLVGPSAAKD 169

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305
           +  T +   A +A ++G+V ++        +  E    +Y   +A N    L + K  I 
Sbjct: 170 LFYTARRFDAAEALRIGLVHRVTAA-----DDLETALADYAATIAGNAPLTLRAAKRAIA 224

Query: 306 RI 307
            +
Sbjct: 225 EL 226

Length = 269

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 33/202 (16%)

Query: 70  VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
            G VL++T++ P  + N++N+ V   + + L  + +D  +    I++G  G F AG D+ 
Sbjct: 10  RGRVLIITINRPEAR-NAVNAAVAQGLAAALDELDADPDLSVG-ILTGAGGTFCAGMDL- 66

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSP-KPIVAAISGSCLGGGLEVALACHYRIAVKD 188
                K   + ++ S  G+      E  P KP++AA+ G  L GG E+ALAC   +A +D
Sbjct: 67  -----KAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARD 121

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
            K                         GLPEV  GL+   GG  RLP+       +++ L
Sbjct: 122 AK------------------------FGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELAL 157

Query: 249 TGKTLKADKAKKMGIVDQLVEP 270
           TG  L A++A ++G+V++L EP
Sbjct: 158 TGDMLTAERAHELGLVNRLTEP 179

Length = 254

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 93.1 bits (232), Expect = 7e-22
 Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 35/213 (16%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
                  +  G V ++TL++P    N+  ++ +  ++ ++  + +D  + + VI      
Sbjct: 1   MMIELDLEIDGHVAILTLNNP--PANTWTADSLQALKQLVLELNADKDVYALVITGDGEK 58

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSE-IE--SSPKPI-VAAISGSCLGGGLEV 176
            F AGAD+++ A     D  K +++   +   E  E  S+ + + +AAI+G  +GGGLE 
Sbjct: 59  FFSAGADLNLFA-----DGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLEC 113

Query: 177 ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK 236
           ALAC  RIA                        +++  + LPE  +GLLP AGGTQ LP 
Sbjct: 114 ALACDIRIA------------------------EEQAQMALPEASVGLLPCAGGTQNLPW 149

Query: 237 LTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269
           L        M L G+ + A  A ++G+V+++VE
Sbjct: 150 LVGEGWAKRMILCGERVDAATALRIGLVEEVVE 182

Length = 258

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 63/230 (27%), Positives = 99/230 (43%), Gaps = 39/230 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
           G +  +T + P  + N++   +   +  I   I +D SIR AV++ G     F+AG DI+
Sbjct: 16  GGIARITFNRPAAR-NAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIA 73

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
              A  TA+      +   ++L  +E    P +AAI+G+C+GGG  +A AC  RIA    
Sbjct: 74  QFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSA 133

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
           +   G P +A            +T        LG         RL  L     V DM  T
Sbjct: 134 R--FGFP-IA------------RT--------LGNCLSMSNLARLVALLGAARVKDMLFT 170

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
            + L+A++A   G+V+++VE                L+  A   A  LA+
Sbjct: 171 ARLLEAEEALAAGLVNEVVED-------------AALDARADALAELLAA 207

Length = 262

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 37/205 (18%)

Query: 76  VTLDSPGV---------KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           VT D  GV          +N L + V+  +   LR + +D  +R  V+       FI GA
Sbjct: 10  VTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGA 69

Query: 127 DISMLAACKTADQVKQISKSGQQILSE-IESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
           DI  +A    A     IS+     L + +   P P++A I G CLGGGLE+A AC  RIA
Sbjct: 70  DIKEMATLDQASAEAFISRLRD--LCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIA 127

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
             D +   G+PEV                +G+P V+   L        LP+L        
Sbjct: 128 AHDAQ--FGMPEVR---------------VGIPSVIHAAL--------LPRLIGWARTRW 162

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEP 270
           + LTG+T+ A +A   G+VD++V  
Sbjct: 163 LLLTGETIDAAQALAWGLVDRVVPL 187

Length = 256

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 29/200 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V +VTL+ P V +N+L+ +   E++ +     +D     A++       F AG D+  
Sbjct: 12  GHVTIVTLNRPEV-MNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKE 70

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
            AA           +SG   L+      KPI+AA++G  +GGG E+ALAC          
Sbjct: 71  QAAGGKRG----WPESGFGGLTSRFDLDKPIIAAVNGVAMGGGFELALACDL-------- 118

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                          IV  +  T   LPE  +GL   AGG  RLP+   L   + M LTG
Sbjct: 119 ---------------IVAAENAT-FALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTG 162

Query: 251 KTLKADKAKKMGIVDQLVEP 270
           + + A +  ++G V+++V  
Sbjct: 163 RRVTAREGLELGFVNEVVPA 182

Length = 259

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 41/73 (56%), Positives = 50/73 (68%)

Query: 3   GGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNST 62
            G YPAP +ILDVVRTG+EKG S+GYEAEA  F +LAMTP+S  L  +F A TE KK++ 
Sbjct: 242 QGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTG 301

Query: 63  KHFKEKAVGDVLV 75
              K + V  V V
Sbjct: 302 SDAKPRPVNKVGV 314

Length = 708

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 36/206 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  VTL+ PG K N++N    SE+  I R + +D  +R AV++SG    F  G D+  
Sbjct: 14  DHVAQVTLNRPG-KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPA 71

Query: 131 LAAC----------KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           +A            +    +++     Q  ++ +    KP++AA+ G C+GGG+++  AC
Sbjct: 72  MAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISAC 131

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
             R A  D K                          + EV LG++   G  QRLP++   
Sbjct: 132 DMRYASADAK------------------------FSVREVDLGMVADVGSLQRLPRIIGD 167

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQ 266
            ++ ++ LTG+ + A +A+K+G+V++
Sbjct: 168 GHLRELALTGRDIDAAEAEKIGLVNR 193

Length = 272

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 84.8 bits (210), Expect = 7e-19
 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 41/228 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G  L+VT++ P  + N+L++E++  +     R+ +D  IRS  I++G  G F AG D+  
Sbjct: 13  GHTLIVTMNRPEAR-NALSTEMLRIMVDAWDRVDNDPDIRSC-ILTGAGGAFCAGMDLKA 70

Query: 131 LAACKTADQVKQISKSGQQILSEIE------SSPKPIVAAISGSCLGGGLEVALACHYRI 184
                  D  K     G    S I+         KP++AA+ G  + GG E+      R+
Sbjct: 71  ATKKPPGDSFK----DGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRV 126

Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
           A +  K                         G+ E    L P  G   RL +        
Sbjct: 127 AGESAK------------------------FGISEAKWSLFPMGGSAVRLVRQIPYTVAC 162

Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
           D+ LTG+ + A +AK++G++  +V P G  L    ++ +E  E +  N
Sbjct: 163 DLLLTGRHITAAEAKEIGLIGHVV-PDGQAL----DKALELAELINAN 205

Length = 263

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 84.7 bits (210), Expect = 9e-19
 Identities = 78/270 (28%), Positives = 123/270 (45%), Gaps = 52/270 (19%)

Query: 70  VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
            G  LV+TL +PG + N+L+ ++ +     L   + D SIR AV+++G  G F AG +++
Sbjct: 10  EGSTLVLTLSNPGAR-NALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLN 67

Query: 130 MLAACKTADQVKQISKSGQ--QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
            L   +      Q +        +  I + PKP++AA+ G+  G G  +ALAC   +A +
Sbjct: 68  RLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAAR 127

Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL--D 245
           D K             Y               V +GL P  GG+  L +  ALP  L  +
Sbjct: 128 DAK---------FVMAY---------------VKVGLTPDGGGSWFLAR--ALPRQLATE 161

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-I 304
           + L GK + A++   +G+V++L EP G  L              A+  A QLA+G    +
Sbjct: 162 LLLEGKPISAERLHALGVVNRLAEP-GQALAE------------ALALADQLAAGSPNAL 208

Query: 305 NRIKPMI---PDKVLDVALKFE---FVRNQ 328
            RIK +I   P+  L   L+ E   FV + 
Sbjct: 209 ARIKSLIADAPEATLAAQLEAERDHFVASL 238

Length = 260

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 84.4 bits (209), Expect = 1e-18
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 40/231 (17%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V V+TL+ P  ++N+    + +E+ + + R ++D ++R  ++++G    F AGAD+  L 
Sbjct: 16  VAVITLNRPD-RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQ 73

Query: 133 AC-----KTADQVKQISK----SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
                  +    V+          Q     + +  KP++AAI+G+C G GL  AL C  R
Sbjct: 74  TIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVR 133

Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
            A    K          A   R                 GL+   G +  LP+L    N 
Sbjct: 134 FAADGAK-------FTTAFARR-----------------GLIAEHGISWILPRLVGHANA 169

Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
           LD+ L+ +T  A++A ++G+V+++V P     +   ERT+ Y E++A N +
Sbjct: 170 LDLLLSARTFYAEEALRLGLVNRVVPP-----DELMERTLAYAEDLARNVS 215

Length = 272

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 83.7 bits (207), Expect = 1e-18
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 31/210 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
               +VT+  P  K+N+LN E+ +E  S L++I +D  IR  VI++G+   F  GAD+S 
Sbjct: 8   EGYAIVTMSRPD-KLNALNLEMRNEFISKLKQINADPKIRV-VIVTGEGRAFCVGADLSE 65

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
            A     D    + ++   I+ EI  S K  ++AI+G   G  + +AL+  ++ A +D K
Sbjct: 66  FAPDFAID----LRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVK 121

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                     A                    LGL    G    L KLT      ++ + G
Sbjct: 122 -------FVTAFQ-----------------RLGLASDTGVAYFLLKLTGQ-RFYEILVLG 156

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEE 280
               A++A++ G++    +PL         
Sbjct: 157 GEFTAEEAERWGLLKISEDPLSDAEEMANR 186

Length = 248

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 33/203 (16%)

Query: 70  VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
              V  +TL+ P    N+L++ +   + + L    +D  +   V+++G    F AG D+ 
Sbjct: 11  HDRVRTLTLNRPE-ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLK 68

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
            L    +A   +    +         +  KP++ AI+G+ + GGLE+ALAC   IA    
Sbjct: 69  ELGGDGSAYGAQD---ALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIA---- 121

Query: 190 KTGLGLPEVALAC--HYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
                  E A     H R+                G+LPG G + RLP+   +     M+
Sbjct: 122 ------SERARFADTHARV----------------GILPGWGLSVRLPQKVGIGRARRMS 159

Query: 248 LTGKTLKADKAKKMGIVDQLVEP 270
           LTG  L A  A + G+V ++V  
Sbjct: 160 LTGDFLDAADALRAGLVTEVVPH 182

Length = 258

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 36/223 (16%)

Query: 63  KHFKEKAVGDVLVVTLD-------SPG--VKVNSLNSEVMSEIQSILRRIQSD-SSIRSA 112
           +H+K    G V  +T+D        PG  +K+NS +  V  E+   ++RI+ +   +R+ 
Sbjct: 11  RHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTV 70

Query: 113 VIISGKPGCFIAGADISMLAACKTADQV---KQISKSGQQILSEIESSPKPIVAAISGSC 169
           V+ SGK   F +GA+I ML     A +V   K  +++   I      S    +AA++G+C
Sbjct: 71  VMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTC 130

Query: 170 LGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG 229
            GGG E+ALAC   + V D+ + + LPEV L                     LG+LPG G
Sbjct: 131 AGGGYELALACDEIMLVDDRSSSVSLPEVPL---------------------LGVLPGTG 169

Query: 230 GTQRLP-KLTALPNVLDMTLT-GKTLKADKAKKMGIVDQLVEP 270
           G  R+  K     +  D+  T  + ++  +AK+  +VD++V+P
Sbjct: 170 GLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP 212

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 68/239 (28%)

Query: 63  KHFKEKAVGDVLVVTLD-------SPG--VKVNSLNSEVMSEIQSILRRIQSD-SSIRSA 112
           +H+K    G V  +T+D        PG  +K+NS +  V  E+   L+RI+ +   +R+ 
Sbjct: 15  RHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTV 74

Query: 113 VIISGKPGCFIAGADISMLAA---------CK----TADQVKQISK-SGQQILSEIESSP 158
           V+ S K   F +GA+I ML           CK    T + ++  S+ SG + +       
Sbjct: 75  VVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFI------- 127

Query: 159 KPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP 218
               AA++G+C GGG E+ALAC   + V D+ + + LPEV L                  
Sbjct: 128 ----AAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPL------------------ 165

Query: 219 EVMLGLLPGAGGTQRLPKLT-------ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
              LG+LPG GG   L ++T        L ++      G  ++  +A    +VD++V+P
Sbjct: 166 ---LGVLPGTGG---LTRVTDKRKVRRDLADIFCTIEEG--VRGKRAVDWRLVDEVVKP 216

Length = 550

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 77.2 bits (191), Expect = 3e-16
 Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 54/222 (24%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  V L+ P V+ N+++    + +    R   +D +   AV+  G  G F AGAD+  
Sbjct: 11  GPVTTVILNRPEVR-NAVDGPTAAALADAFRAFDADDAASVAVL-WGAGGTFCAGADLKA 68

Query: 131 LAACKTADQVKQISKSG-------QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           +       +  ++  SG       +  LS      KP++AA+SG  + GGLE+AL C  R
Sbjct: 69  VGT----GRGNRLHPSGDGPMGPSRMRLS------KPVIAAVSGYAVAGGLELALWCDLR 118

Query: 184 IAVKDKKTGL-----GLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT 238
           +A +D   G+     G+P +           D                  GGT RLP+L 
Sbjct: 119 VAEEDAVFGVFCRRWGVPLI-----------D------------------GGTVRLPRLI 149

Query: 239 ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE 280
                +D+ LTG+ + AD+A  +G+ +++V P G      EE
Sbjct: 150 GHSRAMDLILTGRPVDADEALAIGLANRVV-PKGQARAAAEE 190

Length = 254

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 39/210 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLN-SEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
           G ++ +T++ P  + N+L+ ++ +  + +    I +D S+R AVI++G    F +G ++ 
Sbjct: 11  GHIVTLTMNRPETR-NALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVK 68

Query: 130 MLAACK-----TADQVKQISKSG-QQI---LSEIESSPKPIVAAISGSCLGGGLEVALAC 180
            + A       +   ++Q  + G Q+I   L  +E    P++AA++G  +G G ++A  C
Sbjct: 69  DMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEV---PVIAAVNGPAIGAGCDLACMC 125

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
             RIA +  +                             V LGL+PG GG   LP++  +
Sbjct: 126 DIRIASETARFAESF------------------------VKLGLIPGDGGAWLLPRIIGM 161

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
               +M  TG  + A  A + G+V ++V  
Sbjct: 162 ARAAEMAFTGDAIDAATALEWGLVSRVVPA 191

Length = 266

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 48/245 (19%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI-SML 131
           V VVTLD+P   VN+L+ E+  E+ ++   I     +R  V+++G    F AGAD+    
Sbjct: 14  VAVVTLDNP--PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRP 70

Query: 132 AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
              K    ++  ++  ++    I    KP++AA++G  LG GL +  +C           
Sbjct: 71  DVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCD---------- 120

Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL--DMTLT 249
                         I+V  +    GLPE+ +GL  G     RL       + L   M LT
Sbjct: 121 --------------IIVASENAVFGLPEIDVGLAGGGKHAMRL-----FGHSLTRRMMLT 161

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ----LASGKLKIN 305
           G  + A +  + G+++  +         P E  M    E+A   AS+        K  +N
Sbjct: 162 GYRVPAAELYRRGVIEACL---------PPEELMPEAMEIAREIASKSPLATRLAKDALN 212

Query: 306 RIKPM 310
            I+ M
Sbjct: 213 TIENM 217

Length = 257

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 35/205 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  VTL+ P V+ N+ N  V++E+ +  R + +D S+R AV+++G    F AGAD++ 
Sbjct: 12  GQVATVTLNRPDVR-NAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNW 69

Query: 131 LAACKTADQVKQISKSGQ--QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
           +         +  + + +   +L  I   PKP++A + G    GG+ +  AC   +A   
Sbjct: 70  MKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT-ALPN--VLD 245
                                       L EV LGL+P        P +  A+       
Sbjct: 130 AV------------------------FCLSEVRLGLIP----ATISPYVIRAMGERAARR 161

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEP 270
             LT +   A +A ++G+V ++V  
Sbjct: 162 YFLTAERFDAAEALRLGLVHEVVPA 186

Length = 262

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 35/192 (18%)

Query: 86  NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC----------K 135
           N+L+ +  +E    L  +  + ++ S +I+SG    F +G D+  L +           +
Sbjct: 30  NALSLDFFTEFPKALSSLDQNPNV-SVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR 88

Query: 136 TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGL 195
           + +++++  K  Q  ++ IE   KP++AAI G+C+GGG+++  AC  R   +D       
Sbjct: 89  SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED------- 141

Query: 196 PEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKA 255
                                + EV L +    G  QRLP +    N +++ LTG+    
Sbjct: 142 -----------------AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSG 184

Query: 256 DKAKKMGIVDQL 267
            +AK++G+V ++
Sbjct: 185 SEAKELGLVSRV 196

Length = 275

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 37/223 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VL++ LD P  K N+ +S ++ ++   L   ++D  +R AV+ +     F AG D++ 
Sbjct: 7   GHVLLIGLDRPA-KRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEH-FTAGLDLAD 64

Query: 131 LAACKTADQVKQISKSGQ---QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
           +A  K A       + G      +    S  KP+V A+ G CL  G+E+ LA    +A  
Sbjct: 65  VAP-KLAAGGFPFPEGGIDPWGTVGRRLS--KPLVVAVQGYCLTLGIELMLAADIVVAAD 121

Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
           +                        T     EV  G+LP  G T R P+     N +   
Sbjct: 122 N------------------------TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL 157

Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA 290
           LTG    A +A ++G+V ++V P G  L    ER +E  E +A
Sbjct: 158 LTGDEFDAQEALRLGLVQEVVPP-GEQL----ERAIELAERIA 195

Length = 255

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 29/200 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQ-SDSSIRSAVIISGKPGCFIAGADIS 129
           G V  + L+ P   +N+L+  ++ E+   L+ +  S + I   V++ G    F AG DI 
Sbjct: 14  GRVATIMLNRPEA-LNALDEPMLKELLQALKEVAESSAHI---VVLRGNGRGFSAGGDIK 69

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
           M+ +     +   +  +  +I+  + + PK  ++AI G   G GL +AL   Y IA    
Sbjct: 70  MMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISA 129

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
           K         LA ++               + +GL+P  GG   L K         +   
Sbjct: 130 K---------LAMNF---------------IGIGLIPDGGGHFFLQKRVGENKAKQIIWE 165

Query: 250 GKTLKADKAKKMGIVDQLVE 269
           GK L A +A  +G++D+++ 
Sbjct: 166 GKKLSATEALDLGLIDEVIG 185

Length = 260

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 73.7 bits (181), Expect = 5e-15
 Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 38/255 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +TL+ P  K+NS  +E+  E++  L R++ D   R A++++G    F AG D+S 
Sbjct: 7   AGVARLTLNRPD-KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSE 63

Query: 131 LAACKTA--DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
                    D  + I      ++  + + P P+V A++G   G G  +ALAC   +A + 
Sbjct: 64  RNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES 123

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
                       A   +   K            +GL+P +GGT  LP+L      + + +
Sbjct: 124 ------------ARFIQAFAK------------IGLIPDSGGTWSLPRLVGRARAMGLAM 159

Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIK 308
            G+ L A  A   G++ Q+V+         +   M+  + +AV+ A+Q   G     R  
Sbjct: 160 LGEKLDARTAASWGLIWQVVD---------DAALMDEAQALAVHLAAQPTRGLALTKRAI 210

Query: 309 PMIPDKVLDVALKFE 323
                  LD  L  E
Sbjct: 211 QAAATNSLDTQLDLE 225

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 72.6 bits (178), Expect = 7e-15
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 26/185 (14%)

Query: 86  NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK 145
           N+L  +V  EI +    +     + +AVI+ G    F AG D+  L    +A +    ++
Sbjct: 29  NALTRQVYREIVAAANELGRRDDV-AAVILYGGHEIFSAGDDMPELRTL-SAQEADTAAR 86

Query: 146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYR 205
             QQ +  + + PKP VAAI+G  LG GL +ALA  +R++  + K               
Sbjct: 87  VRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVK--------------- 131

Query: 206 IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVD 265
                     G  E++ GL P   G  RL +        ++  +G+   A++A  +G++D
Sbjct: 132 ---------FGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLID 182

Query: 266 QLVEP 270
           ++V P
Sbjct: 183 EMVAP 187

Length = 222

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 32/205 (15%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
            K+   +  +T++ P   +N+L   +M E+ +  +R+  D S++  +I++G    F +G 
Sbjct: 14  PKSRNGIATITINRPK-ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGV 71

Query: 127 DISMLAACKTADQVKQISKS-GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
           D++  AA    +  K   K      ++++E   KPI+ AI+G  +  G E+ALAC   +A
Sbjct: 72  DLT--AA---EEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVA 126

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
            +  K         +  H +                 G+ P  G +Q+L ++       +
Sbjct: 127 SRGAKF--------IDTHAK----------------FGIFPSWGLSQKLSRIIGANRARE 162

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEP 270
           ++LT   L A+ A++ G+V+ +VE 
Sbjct: 163 VSLTAMPLTAETAERWGLVNHVVEE 187

Length = 265

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 39/233 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G++ ++TL   G   + LN  ++  I+S LR+++S ++  S +I + +   F  G D++ 
Sbjct: 8   GNLFILTLTGDGE--HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAW 65

Query: 131 L-AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
             AA     ++  +    + +++++ S P P +AA++G     G  +AL+  Y +  KD+
Sbjct: 66  AQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDR 125

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL-DMTL 248
              L + EV +             GL LP+  + LL    G+         P    D+ L
Sbjct: 126 GV-LYMSEVDI-------------GLPLPDYFMALLRAKIGS---------PAARRDVLL 162

Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
               L A++A +MGIVD           H      E   E AV    +LA+ K
Sbjct: 163 RAAKLTAEEAVEMGIVDSA---------HDSA---EETVEAAVRLGEELAARK 203

Length = 239

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 42/214 (19%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS--- 129
           +  +TL+ P  K+N+    +  E+        +D ++R AVI++G    F AGAD+S   
Sbjct: 14  IATITLNRPD-KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGG 71

Query: 130 -------------MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEV 176
                             +       +   G ++   I  S KP++AA++G  +G G  +
Sbjct: 72  NTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATM 131

Query: 177 ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK 236
            LA   R+A    + G               V  +           G++P A  +  LP+
Sbjct: 132 TLAMDIRLASTAARFGF--------------VFGR----------RGIVPEAASSWFLPR 167

Query: 237 LTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
           L  L   L+   +G+   A +A   G+V  +  P
Sbjct: 168 LVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201

Length = 296

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 72.5 bits (178), Expect = 7e-14
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 4   GLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61
           G YPA  +ILDVVR G+ +G   G +AEA  F +L MTP+S  L  +F A TE KK +
Sbjct: 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKET 295

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 47/245 (19%)

Query: 62  TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
            +HF  +    V  +TL+ P  K N L  E  +E++ + R +     ++ AV+++G  G 
Sbjct: 16  ARHFLWEVDDGVATITLNRPERK-NPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGN 73

Query: 122 FIAGAD----ISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVA 177
           F +G D    I  L      + +     +G  + +     P+PI+AA+ G C G G  +A
Sbjct: 74  FCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRAC-PQPIIAAVDGVCAGAGAILA 132

Query: 178 LACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA--GGTQRLP 235
           +A   R+     KT      V LA                         GA  G    LP
Sbjct: 133 MASDLRLGTPSAKTAFLFTRVGLA-------------------------GADMGACALLP 167

Query: 236 KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS 295
           ++       ++  TG+++ A++ ++ G  ++LVEP             E L   A   A 
Sbjct: 168 RIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-------------EELLAEAQALAR 214

Query: 296 QLASG 300
           +LA+G
Sbjct: 215 RLAAG 219

Length = 277

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V ++T++ P  + N++ +E+ +++++ +   ++D  +  A++++G    F AGAD++ L 
Sbjct: 13  VALITVNDPD-RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALG 70

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           A         + +     L+ + S P P +AA++G+ +G GL +ALA   RIA       
Sbjct: 71  AAPGRPAEDGLRRIYDGFLA-VASCPLPTIAAVNGAAVGAGLNLALAADVRIAG------ 123

Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
              P+      +                 LGL PG G T  L +           L G  
Sbjct: 124 ---PKALFDARF---------------QKLGLHPGGGATWMLQRAVGPQVARAALLFGMR 165

Query: 253 LKADKAKKMGIVDQLVE 269
             A+ A + G+   + +
Sbjct: 166 FDAEAAVRHGLALMVAD 182

Length = 249

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 42/230 (18%)

Query: 72  DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML 131
           ++ ++TL+ P  ++NS+  +VM  ++  L  +  D+S+R  V+++G    F +GAD    
Sbjct: 19  EIALITLNRPE-RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSA 76

Query: 132 AACKTADQVKQ--ISKSGQQILSEI----ESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
                 + + +   +    ++L ++        +P++AA++G  +GGGL +ALA   R+A
Sbjct: 77  GVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVA 136

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG-LLPGAGGTQRLPKLTALPNVL 244
                            ++R        GL   E+ L  LLP A G+ R           
Sbjct: 137 SSS-------------AYFR--AAGINNGLTASELGLSYLLPRAIGSSR---------AF 172

Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
           ++ LTG+ + A++A+++G+V + V         P+E+ ++    +A   A
Sbjct: 173 EIMLTGRDVDAEEAERIGLVSRQV---------PDEQLLDTCYAIAARMA 213

Length = 276

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 30/202 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +TL+ P  K+NS   E+  E++  L +++ D   R A++++G    F AG D++ 
Sbjct: 12  AGVATLTLNRPD-KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLAD 68

Query: 131 LAACKTA---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
                     D  + I      ++  + + P P++AA++G   G G  +ALAC   +A +
Sbjct: 69  RDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAAR 128

Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
                        A   +  VK            +GL+P +GGT  LP+L  +   L + 
Sbjct: 129 S------------ASFIQAFVK------------IGLVPDSGGTWFLPRLVGMARALGLA 164

Query: 248 LTGKTLKADKAKKMGIVDQLVE 269
           L G+ L A++A++ G++ ++V+
Sbjct: 165 LLGEKLSAEQAEQWGLIWRVVD 186

Length = 262

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 67.3 bits (164), Expect = 7e-13
 Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 46/231 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G +L + L  P  K N +++ +++ + + L     DS++R AV++  +   F  GA +  
Sbjct: 9   GKLLRLRLARP--KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASV-- 63

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
             A    DQ   +  S  +++  +  SP PI+ A+ G CLGGGLEVA A +   A  D K
Sbjct: 64  --AEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAK 121

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT---QRLPKLTALPNVLDMT 247
                                   LG PE++LG+   A      +R+ ++ A     D+ 
Sbjct: 122 ------------------------LGQPEIVLGVFAPAASCLLPERMGRVAA----EDLL 153

Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEE-VAVNTASQL 297
            +G+++   +  ++G+ + + E        PE   + + +E  A  +AS L
Sbjct: 154 YSGRSIDGAEGARIGLANAVAE-------DPENAALAWFDEHPAKLSASSL 197

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 55/207 (26%), Positives = 82/207 (39%), Gaps = 63/207 (30%)

Query: 89  NSEVMSEI---QSILRRIQSDSS--IRSAVIISGKPGCFIAGADISMLA----------- 132
           N E++ +I   Q  +R+   DS   +   V+ S  PG F  G D+++ A           
Sbjct: 41  NLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDAL 100

Query: 133 ---ACKTADQVKQISK-SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
              A    D V    +  G   +S         +A + G  LGGG E AL+ H  IA + 
Sbjct: 101 LAYARACVDGVHAFHRGFGAGAIS---------IALVQGDALGGGFEAALSHHTIIAERG 151

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG----TQRL-PKLTALPNV 243
            K                        +G PE++  L PG G      +R+ PKL      
Sbjct: 152 AK------------------------MGFPEILFNLFPGMGAYSFLARRVGPKLAE---- 183

Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEP 270
            ++ L+GK   A++   MG+VD LVE 
Sbjct: 184 -ELILSGKLYTAEELHDMGLVDVLVED 209

Length = 287

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 40/216 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  +TLDSP  + N+L++ +++++   LR   +D ++R AV+++   G F AGAD+S 
Sbjct: 14  GGVATLTLDSPHNR-NALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSE 71

Query: 131 LAACKTADQVKQISKSGQQI--LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
                       ++++ +    L  I   PKP++AAI G    GG  +  AC        
Sbjct: 72  AGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACD------- 124

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT--ALPNVLDM 246
                            IVV   ++   L E  +G+ P       LP+L+  A       
Sbjct: 125 -----------------IVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYY-- 165

Query: 247 TLTGKTLKADKAKKMGIV-------DQLVEPLGPGL 275
            LTG+   A +A ++G+V       D  V  L   L
Sbjct: 166 -LTGEKFGAAEAARIGLVTAAADDVDAAVAALLADL 200

Length = 260

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 35/203 (17%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V  +TL+ P  K N+L++ +++E+ +  RR+ +D+++R  V+++G    F AG D+  + 
Sbjct: 15  VATLTLNRPE-KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMR 72

Query: 133 ACKTADQVKQISKSGQ--QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           A  TAD+  +I ++ +   +L  +   PKP++  I G   GGG+ +   C   IAV   +
Sbjct: 73  AQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR 132

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT---QRLPKLTALPNVLDMT 247
                                    GL E  LGL+P         R+ +  A      + 
Sbjct: 133 ------------------------FGLTETRLGLIPATISPYVVARMGEANARR----VF 164

Query: 248 LTGKTLKADKAKKMGIVDQLVEP 270
           ++ +   A++A ++G++ ++V  
Sbjct: 165 MSARLFDAEEAVRLGLLSRVVPA 187

Length = 262

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 27/204 (13%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-KPGCFIAG 125
           ++  G + VV L      VNS+   +   +   L  +++D ++R  V  SG +   F AG
Sbjct: 16  DRRPGGIAVVWLAKE--PVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAG 73

Query: 126 ADISMLAACKT-ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
            DI+ L A KT A +  +   +    L  +  S    V AI G+C  GG  V+L C YR+
Sbjct: 74  NDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRL 133

Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
               + T +GL EVAL             G+ +P+    L  G    +++ +        
Sbjct: 134 -QTTEGT-MGLNEVAL-------------GIPVPKFWARLFMGRVIDRKVAESL------ 172

Query: 245 DMTLTGKTLKADKAKKMGIVDQLV 268
              L G+ ++  +AK++G++D++V
Sbjct: 173 --LLRGRLVRPAEAKQLGLIDEVV 194

Length = 278

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 9/118 (7%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VL + L  P  + N+LN+E+  E++  +R+   D S R A++++G+   F AGAD   
Sbjct: 8   GQVLTIELQRPE-RRNALNAELCEELREAVRKA-VDESAR-AIVLTGQGTVFCAGAD--- 61

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
           L+    AD       +  ++L  I+++P P++AAI+G  +G GL++A+AC  R+   +
Sbjct: 62  LSGDVYADD---FPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE 116

Length = 243

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 29/203 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
            D+  +TL+ P V  N  N  +  EI   LR  + D S+R  ++I+     F  G D+  
Sbjct: 10  DDLATLTLNRPEVS-NGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVE 67

Query: 131 LAACKTADQVK---QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
           +      D V+   +I++   +I   I+  PKP++  + G+  G    +A+A  + IA  
Sbjct: 68  MKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIA-- 125

Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
                                   KT      V +GL P AGG   L +   L     + 
Sbjct: 126 ----------------------STKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLA 163

Query: 248 LTGKTLKADKAKKMGIVDQLVEP 270
           +TG+ L A+KA + G V ++ E 
Sbjct: 164 MTGEALTAEKALEYGFVYRVAES 186

Length = 255

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 11/141 (7%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL + L+ PG  +N+ ++ +  E+  I R +  D  +R  V+I G+   F AG D++++ 
Sbjct: 22  VLEIVLNGPG-ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVE 79

Query: 133 A-CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK- 190
                 +   ++ +  + ++  + +  KPIV+AI G  +G GL  AL     IA KD + 
Sbjct: 80  EMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARI 139

Query: 191 ----TGLGLPEVALACHYRIV 207
               T LG   VA   H  IV
Sbjct: 140 IDGHTRLG---VAAGDHAAIV 157

Length = 268

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 50/288 (17%)

Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           K       G V ++TLD P V +N+++ +++  +   L  I+   +    ++++G    F
Sbjct: 4   KKVTLDFDGGVAILTLDHPEV-MNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGF 62

Query: 123 IAGADIS-MLAACKTADQVKQISKSGQQI----LSEIESSPKPIVAAISGSCLGGGLEVA 177
             GA++    +  + +D       + +      L  + + P PIV A++G   G G+  A
Sbjct: 63  CTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFA 122

Query: 178 LACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL 237
           L     +  +            L    RI                GL+P  G T  LP+L
Sbjct: 123 LMGDLILCARSA--------YFLQAFRRI----------------GLVPDGGSTWLLPRL 158

Query: 238 TALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL 297
                 ++++L G+ L A+ A + G+V+++V          +   M      A+  A +L
Sbjct: 159 VGKARAMELSLLGEKLPAETALQWGLVNRVV---------DDAELM----AEAMKLAHEL 205

Query: 298 ASGKLK----INRIKPMIPDKVLDVALKFEFVRNQIFGK---AKEKVM 338
           A+G       I ++    P+   +  L  E    +I GK    KE V 
Sbjct: 206 ANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVG 253

Length = 266

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 43/228 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +TLD    KVN+L+  ++  + + L + + D   R+ V+I+G+PG F  G D+ +
Sbjct: 11  DGVATITLDDG--KVNALSPAMIDALNAALDQAEDD---RAVVVITGQPGIFSGGFDLKV 65

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +     A     +  +G  +   + S PKP++ A +G  +  G  + L+  YRI V    
Sbjct: 66  MT--SGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGV-HGP 122

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
             +GL EVA+             G+ +P   + L        RL   +A        +  
Sbjct: 123 FKIGLNEVAI-------------GMTMPHAAIELA-----RDRLTP-SAFQRA---VINA 160

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA 298
           +    ++A   G +D++V P             E L   A   A +LA
Sbjct: 161 EMFDPEEAVAAGFLDEVVPP-------------EQLLARAQAAARELA 195

Length = 229

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 45/232 (19%), Positives = 98/232 (42%), Gaps = 46/232 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +TL+ P    N+L+  +++ +Q+ L  I +D S+R  V+++     F AG D+  
Sbjct: 19  DGVATLTLNRPQ-AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKE 76

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           + A +     + +     +++  I + P+P++A + G     G ++  +C   +A    +
Sbjct: 77  MRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTAR 136

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL---PGAGGTQRLPKLTALPNVLDMT 247
                                     +P V +GL    P    ++ +P+  A    ++M 
Sbjct: 137 ------------------------FAVPGVNIGLFCSTPMVALSRNVPRKQA----MEML 168

Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           LTG+ + A  A++ G+V+++V               + L+      A+ +A+
Sbjct: 169 LTGEFIDAATAREWGLVNRVVPA-------------DALDAAVARLAAVIAA 207

Length = 266

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 42/202 (20%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           GDV  + L  P  + N++N  +++E   +L R +  ++I   V++ G P  F  GAD S 
Sbjct: 12  GDVCFLQLHRPEAQ-NTINDRLIAECMDVLDRCEHAATI---VVLEGLPEVFCFGADFSA 67

Query: 131 LAACKTADQVKQISKSGQQIL----SEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
           +A         +      + L      + + P   +A + G    GG+    A       
Sbjct: 68  IAE---KPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD----- 119

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT---ALPNV 243
                              IV+ D+     L E++ GL+P       LP L         
Sbjct: 120 -------------------IVIADETAPFSLSELLFGLIPAC----VLPFLIRRIGTQKA 156

Query: 244 LDMTLTGKTLKADKAKKMGIVD 265
             MTL  + + A +A   G+VD
Sbjct: 157 HYMTLMTQPVTAQQAFSWGLVD 178

Length = 255

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 70/276 (25%)

Query: 60  NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP 119
           ++ K    +  G +  +TL+ P  K N++ ++   E+++ + R   D  +   +++SG  
Sbjct: 7   DNLKTMTYEVTGRIARITLNRPE-KGNAITADTPLELRAAVERADLDPGVH-VILVSGAG 64

Query: 120 GCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSP--------------------- 158
             F AG D+S  A   ++          +Q ++ +   P                     
Sbjct: 65  KGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLW 124

Query: 159 ---KPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGL------GLPEVALACHYRIVVK 209
              KP VA + G C+ GG ++AL C   IA  D K G       G+P   +  + R+   
Sbjct: 125 HAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAY-RL--- 180

Query: 210 DKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269
                               G QR  +         +  TG  +   +A + G+  + V 
Sbjct: 181 --------------------GPQRAKR---------LLFTGDCITGAQAAEWGLAVEAVP 211

Query: 270 PLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305
           P        +ERT   +E +A    +QLA  KL +N
Sbjct: 212 P-----EELDERTERLVERIAAVPVNQLAMVKLAVN 242

Length = 302

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 37/206 (17%)

Query: 70  VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQ--SDSSIRSAVIISGKPGC--FIAG 125
           +  +  +T ++P  K N+L S+V+  I  +++ +   +   IR  VI+    G   + AG
Sbjct: 11  INKIATITFNNPA-KRNAL-SKVL--IDDLMQALSDLNRPEIR-VVILRAPSGSKVWSAG 65

Query: 126 ADISML-AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
            DI  L +  +  D +       +QIL  I+  PKP++A + GS  GG  E+ ++C    
Sbjct: 66  HDIHELPSGGR--DPL-SYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCD--- 119

Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
                                +++    +   +    LG+     G            V 
Sbjct: 120 ---------------------LIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVK 158

Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEP 270
           +M  T   + A +A  +GI++ +VE 
Sbjct: 159 EMFFTASPITAQRALAVGILNHVVEV 184

Length = 261

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 47/229 (20%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  VT+D P   VN+L S     +   +    +D   R  V++  +   F AG DI  L 
Sbjct: 12  IAEVTVDYP--PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQ 68

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           A      +   ++        +     P++AA+ G CLGGG                   
Sbjct: 69  ATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGG------------------- 109

Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL--TG 250
                + L  +  ++V       GLPEV  G L  A   QRL     +P  L   L  T 
Sbjct: 110 -----IGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRL-----VPQHLMRALFFTA 159

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
            T+ A +    G V+++V         P ++    L+E A+  A ++A+
Sbjct: 160 ATITAAELHHFGSVEEVV---------PRDQ----LDEAALEVARKIAA 195

Length = 249

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 50/244 (20%)

Query: 69  AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI 128
           A   V V+  + P  K N++   + + +   L+   +D +IR+ V + G  GCF AG D+
Sbjct: 12  AHPGVQVIRFNRPEKK-NAITRAMYATMAKALKAADADDAIRAHVFL-GTEGCFSAGNDM 69

Query: 129 SMLAACKTADQVKQISKSGQQI---LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
               A          +  G +I   L  +  + KPIV+ + G  +G G  + L C    A
Sbjct: 70  QDFLAAAMGG-----TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFA 124

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
                              R + +        P V L L+P AG +   P+L        
Sbjct: 125 SP-----------------RSLFRT-------PFVDLALVPEAGSSLLAPRLMGHQRAFA 160

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG---KL 302
           +   G+   A+ A++ G++ ++V+              E +E   +  A +LA+     L
Sbjct: 161 LLALGEGFSAEAAQEAGLIWKIVDE-------------EAVEAETLKAAEELAAKPPQAL 207

Query: 303 KINR 306
           +I R
Sbjct: 208 QIAR 211

Length = 251

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 37/202 (18%)

Query: 75  VVTLDSPGVK-VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISML- 131
           V+TL+ P  K +N+L+ E++  I + L   + D ++  AV+I G     F AG DI  L 
Sbjct: 15  VITLNRP--KALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALY 71

Query: 132 --AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
             A         +  +   ++ + I   PKP +A + G  +GGG  V ++ H        
Sbjct: 72  EAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGG--VGISAHGS------ 123

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD--MT 247
                         +RIV   ++T + +PE  +G  P  GGT  L +    P  L   + 
Sbjct: 124 --------------HRIVT--ERTKMAMPETGIGFFPDVGGTYFLSR---APGALGTYLA 164

Query: 248 LTGKTLKADKAKKMGIVDQLVE 269
           LTG  + A  A   G+ D  V 
Sbjct: 165 LTGARISAADALYAGLADHFVP 186

Length = 342

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 25/114 (21%)

Query: 158 PKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL 217
            KP +A ++G C GGG    +AC   IA  + +                         GL
Sbjct: 104 QKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQ------------------------FGL 139

Query: 218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPL 271
            E+  G+ PG G ++ +       + L   +TG+T    KA +MG+V++ V PL
Sbjct: 140 SEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESV-PL 192

Length = 275

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 69  AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI 128
             G V V+TL+ P   +N ++  V+S +   L + + D S+   +II G    F AG D+
Sbjct: 17  EKGRVRVITLNRPRQ-LNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDL 74

Query: 129 SMLAACKTADQ-VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
            M    + +D    ++      +   I +  K  VA + G  +GGG  + +   +R+   
Sbjct: 75  KMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVT- 133

Query: 188 DKKTGLGLPEVALACH 203
            +KT    PE ++  H
Sbjct: 134 -EKTVFATPEASVGFH 148

Length = 379

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 36/242 (14%)

Query: 76  VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA-- 133
           + LD+P  + NS  ++++  I    RR  SD  + + V  +     F  G +    A   
Sbjct: 41  IILDNPK-QYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYY 99

Query: 134 CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGL 193
                + +Q  +    ++S I    KP++  ++G  +GGG E+ +A  + IA      G 
Sbjct: 100 AGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQ 159

Query: 194 GLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTL 253
             P+     H                   G  P  G T  LP +      +      +  
Sbjct: 160 AGPK-----H-------------------GSAPIGGATDFLPLMIGCEQAMVSGTLCEPW 195

Query: 254 KADKAKKMGIVDQLVEPL---GPGLNHPEERTMEYLEEVA------VNTASQLASGKLKI 304
            A KAK++GI+  +V  L   G  + +P   T  YL+E             +L +GK  I
Sbjct: 196 SAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELI 255

Query: 305 NR 306
            +
Sbjct: 256 KQ 257

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 6   YPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHF 65
           YPAP+  +  +      G     E EA+GF +LA T  ++ L+G+F      K  + K  
Sbjct: 248 YPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL- 306

Query: 66  KEKAVGDV 73
             K    V
Sbjct: 307 -AKDAKPV 313

Length = 715

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 30/191 (15%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  VT+     K N+ + E+  ++      I  D   +  VI++G P  F  G     L 
Sbjct: 15  IAQVTMQDRVNK-NAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLL 72

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           + +T       +     + S   + P P++AA+ G  +GGGL + L     +  +     
Sbjct: 73  SLQTGKGTFTEAN----LYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSR----- 123

Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
               E     ++               +  G  PG G T  LP+   L    +M LT + 
Sbjct: 124 ----ESVYTANF---------------MKYGFTPGMGATAILPEKLGLALGQEMLLTARY 164

Query: 253 LKADKAKKMGI 263
            +  + KK G+
Sbjct: 165 YRGAELKKRGV 175

Length = 249

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 37/172 (21%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V ++TL+ P  ++N+L+  ++S +  +    + D S++  VI+ G    F AG D++  A
Sbjct: 19  VRILTLNRPK-QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVA--A 74

Query: 133 ACKTADQVKQISKSGQQILSE-------IESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
             +  +Q     + G    S+       + +  K  V+ ++G  +GGG  V++   +RIA
Sbjct: 75  VVRDIEQGNW--RLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIA 132

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL 237
            ++                        T   +PE  LGL P  G +  L +L
Sbjct: 133 TEN------------------------TVFAMPETALGLFPDVGASYFLSRL 160

Length = 381

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 84  KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI 143
           K N+ N++++ E+   L ++QSD+S+R  +++ G+   F AGAD++ +   ++AD     
Sbjct: 26  KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQ--QSADLDYNT 82

Query: 144 SKSGQQILSEIESS----PKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVA 199
           +    + L+E+  +      P +A + G+  GG L +   C   I   D +  L    + 
Sbjct: 83  NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIG 142

Query: 200 LA 201
           LA
Sbjct: 143 LA 144

Length = 265

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query: 2   SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61
           +G  YPAP+  +  +      G     E EA+GF +LA T ++K L+GLF      K  +
Sbjct: 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKA 303

Query: 62  TKHFK 66
            K  K
Sbjct: 304 KKADK 308

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 85  VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---ADQVK 141
           +N+L + +   +Q + +  + D +I   V++ G    F AG DI  L   +     D ++
Sbjct: 58  LNALTTHMGYRLQKLYKNWEEDPNI-GFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIR 116

Query: 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALA 201
           +   S    +  + +  KP VA ++G  +GGG  V++   +R+A    +T    PE  + 
Sbjct: 117 EFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVAT--DRTIFATPETIIG 174

Query: 202 CH 203
            H
Sbjct: 175 FH 176

Length = 401

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 58/259 (22%), Positives = 100/259 (38%), Gaps = 66/259 (25%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG----- 125
           G V  +TL+ P  ++N++   +  EI++ +   + D  I+  +++ G    F  G     
Sbjct: 13  GPVATITLNRPE-QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGG 70

Query: 126 ------------------ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167
                              D +M+ A +T    K ++         I  + KP++A + G
Sbjct: 71  GFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMA---------IWRASKPVIAQVHG 121

Query: 168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG 227
            C+GG  + AL     IA  D    +G P   +   Y        TG+ L          
Sbjct: 122 WCVGGASDYALCADIVIASDDAV--IGTPYSRMWGAYL-------TGMWL---------- 162

Query: 228 AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLE 287
                RL    +L  V   +LTG+ L   +A +  ++++ V          E R  E   
Sbjct: 163 ----YRL----SLAKVKWHSLTGRPLTGVQAAEAELINEAVP-----FERLEARVAEVAT 209

Query: 288 EVAVNTASQLASGKLKINR 306
           E+A    SQL + KL +N+
Sbjct: 210 ELARIPLSQLQAQKLIVNQ 228

Length = 298

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 41/253 (16%)

Query: 61  STKHFK----EKAVGDVLV-VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVII 115
           S K F     EKAVG+ +  +T++ P  + N+     + E+Q      + DSS+   +I+
Sbjct: 60  SGKEFTDIIYEKAVGEGIAKITINRPERR-NAFRPRTVKELQRAFNDARDDSSV-GVIIL 117

Query: 116 SGK-PGCFIAGADISMLAACKTADQ--VKQISKSGQQILSEIESSPKPIVAAISGSCLGG 172
           +GK    F +G D ++             +++    QI  +I   PKP++A ++G  +GG
Sbjct: 118 TGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQI--QIRRLPKPVIAMVAGYAVGG 175

Query: 173 GLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232
           G  + + C   IA  +   G                   +TG   P+V  G      G+ 
Sbjct: 176 GHILHMVCDLTIAADNAVFG-------------------QTG---PKV--GSFDAGYGSS 211

Query: 233 RLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
            + +L       +M    +   A +A KMG+V+ +V      L+  E  T+++  E+  N
Sbjct: 212 IMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVP-----LDELEGETVKWCREILRN 266

Query: 293 TASQLASGKLKIN 305
           + + +   K  +N
Sbjct: 267 SPTAIRVLKSALN 279

Length = 327

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 23/139 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G +  +TL+ P  + N+ N +++ E+ +  RR ++D ++R  ++++G    F AG D+  
Sbjct: 12  GRIARITLNRPEAR-NAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGS 69

Query: 131 LAACKTADQVKQ---------ISKSGQQILSEIESS------------PKPIVAAISGSC 169
               +  D              +K G +     E              PKP +A + G+C
Sbjct: 70  GTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGAC 129

Query: 170 LGGGLEVALACHYRIAVKD 188
           + GGL +A  C   +A  D
Sbjct: 130 IAGGLMLAWVCDLIVASDD 148

Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
KOG1680|consensus	290		100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
KOG1679|consensus	291		100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG1681|consensus	292		100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
KOG0016|consensus	266		99.98
KOG1682|consensus	287		99.96
KOG1684|consensus	401		99.94
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.78
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.77
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.59
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.55
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.48
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.47
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.44
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.41
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.29
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.21
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.16
PRK10949	618	protease 4; Provisional	98.87
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.79
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.71
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.6
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.58
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.43
KOG1683|consensus	380		98.38
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.3
PRK11778	330	putative inner membrane peptidase; Provisional	98.25
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.22
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.18
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.14
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.13
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.09
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.09
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.07
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.06
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.03
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.94
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.92
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.86
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.82
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.82
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.75
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.68
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.68
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.66
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.65
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.6
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.55
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.45
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.43
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.39
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.3
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.24
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.13
PRK10949	618	protease 4; Provisional	97.1
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.03
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.02
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.02
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.85
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.81
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.99
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.27
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	95.19
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.06
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	94.76
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	93.99
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	91.11
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	85.96
KOG0840|consensus	275		82.54
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	82.41
TIGR00237	432	xseA exodeoxyribonuclease VII, large subunit. This	80.6

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=3.7e-48  Score=411.89  Aligned_cols=276  Identities=60%  Similarity=0.940  Sum_probs=236.9

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .+.++.++++++|++|+||||+.+.|++|.+++.+|.++++.++.|++|+++||++|.|++||+|+||+++....+....
T Consensus        11 ~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~   90 (737)
T TIGR02441        11 ARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEV   90 (737)
T ss_pred             CCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHH
Confidence            44568888899999999999974589999999999999999999999999877889999999999999998643333444


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+...+++++.++.++||||||+|||+|+|||++|+|+||||||++++++                      +|++||+
T Consensus        91 ~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a----------------------~fglpEv  148 (737)
T TIGR02441        91 TQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKT----------------------LLGLPEV  148 (737)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCC----------------------eEecchh
Confidence            555666788999999999999999999999999999999999999998766                      8999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|||++|..+|++|+++|++++++||+++||||+|+|+.++.++++++++.+++.+.|.+++++++..
T Consensus       149 ~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~  228 (737)
T TIGR02441       149 MLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG  228 (737)
T ss_pred             hhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999986345666778888899999999999998877


Q ss_pred             cccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060         301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT  359 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~  359 (366)
                      ++..++.+... .+........++.+...+..+++++.++++||||||.+++++|+...
T Consensus       229 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~  286 (737)
T TIGR02441       229 KLSINRDKGLV-HKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGY  286 (737)
T ss_pred             cCCcccccccc-CccchhhcccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHh
Confidence            76666654332 22211112222456778999999999999999999999999998765

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG1680|consensus

Probab=100.00  E-value=6.7e-45  Score=335.58  Aligned_cols=198  Identities=31%  Similarity=0.507  Sum_probs=172.9

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060          66 KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK  145 (366)
Q Consensus        66 ~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  145 (366)
                      ....+++|+.|+||||. ++|+++..++.+|.+++..+++|+++.++ |++|.|++||+|+||+++......+-...   
T Consensus        40 ~~~~d~~I~lItlNRP~-~~Nal~~~~m~eL~~A~~~~e~D~s~~vi-VltG~gksFcsG~Dl~e~~~~~~~~~~~~---  114 (290)
T KOG1680|consen   40 LVGEDNGIALITLNRPK-ALNALCRATMLELAEAFKDFESDDSVGVI-VLTGSGKSFCSGADLKEMKKDEFQDVSDG---  114 (290)
T ss_pred             EeecCCCeEEEEeCChH-HhccccHHHHHHHHHHHHHhhccCcccEE-EEEcCCCccccccCHHHHhhccccccccc---
Confidence            33447899999999999 89999999999999999999999999965 55899999999999999876322111111   


Q ss_pred             HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCC
Q psy9060         146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL  225 (366)
Q Consensus       146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~  225 (366)
                      .+...+..+.+.+||+||+|||+|+|||+||+++||+|||++++                        +|++|+.++|++
T Consensus       115 ~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~A------------------------kfg~~~~~~Gi~  170 (290)
T KOG1680|consen  115 IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGA------------------------KFGFFEIRMGII  170 (290)
T ss_pred             cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCC------------------------eecccccccCCc
Confidence            12233334447899999999999999999999999999999988                        999999999999


Q ss_pred             CChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccccc
Q psy9060         226 PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN  305 (366)
Q Consensus       226 p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~~~  305 (366)
                      |++|||+||+|.||..+|++|++||++++|+||+++||||+|+|.             ++++.+|.+|+++|++.|..+.
T Consensus       171 p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-------------~~~l~eAv~l~~~Ia~~~~~~v  237 (290)
T KOG1680|consen  171 PSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPS-------------GDALGEAVKLAEQIAKNSPLVV  237 (290)
T ss_pred             cCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecc-------------hhHHHHHHHHHHHHHhCCHHHH
Confidence            999999999999999999999999999999999999999999997             6789999999999999976533

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=1.6e-43  Score=337.50  Aligned_cols=209  Identities=23%  Similarity=0.386  Sum_probs=183.8

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC--HH-
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT--AD-  138 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~--~~-  138 (366)
                      |+++.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|.|++++.....  .. 
T Consensus         7 ~~~i~~~~~~~va~itlnrp~-~~Nal~~~m~~el~~al~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~   84 (275)
T PRK09120          7 WDTVKVEVEDGIAWVTLNRPE-KRNAMSPTLNREMIDVLDALEFDDDAGVLV-LTGAGDAWSAGMDLKEYFRETDAQPEI   84 (275)
T ss_pred             cccEEEEEECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHHhCCCceEEE-EEcCCCceecCcCHHHHhhccccchhH
Confidence            677899999999999999999 799999999999999999999999999755 5888999999999998743211  11 


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+....+.++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~p  140 (275)
T PRK09120         85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA------------------------QFGLS  140 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCc------------------------EecCC
Confidence            122233345677889999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|||+             +++.+.+.+++++|+
T Consensus       141 e~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la  207 (275)
T PRK09120        141 EINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPL-------------AQLRARTRELAAKLL  207 (275)
T ss_pred             ccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997             789999999999999


Q ss_pred             cCcc-cccccCC
Q psy9060         299 SGKL-KINRIKP  309 (366)
Q Consensus       299 ~~~~-~~~~~~~  309 (366)
                      ..++ .+..+|.
T Consensus       208 ~~~p~a~~~~K~  219 (275)
T PRK09120        208 EKNPVVLRAAKD  219 (275)
T ss_pred             hCCHHHHHHHHH
Confidence            8764 3444453

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=5.3e-43  Score=371.59  Aligned_cols=254  Identities=30%  Similarity=0.476  Sum_probs=211.8

Q ss_pred             ceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHHH
Q psy9060          64 HFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQV  140 (366)
Q Consensus        64 ~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~~  140 (366)
                      ++.++. +++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++++|| +|.+++||+|+||+++...  ......
T Consensus         7 ~i~~~~~~~gva~Itlnrp~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~   84 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPG-SVNKFDRATLASLDQALDAIKAQSSLKGVIL-TSGKDAFIVGADITEFLGLFALPDAEL   84 (714)
T ss_pred             eEEEEEccCCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEE-ECCCCccccCcCHHHHhhcccCCHHHH
Confidence            566764 6899999999998 7999999999999999999999999997655 7788899999999998642  222333


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+.+..++++.+|.++||||||+|||+|+|||++|+++||||||++++                        +|++||+
T Consensus        85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a------------------------~fglPEv  140 (714)
T TIGR02437        85 IQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTA------------------------KIGLPET  140 (714)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCC------------------------EEecchh
Confidence            4455567789999999999999999999999999999999999999976                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|+|++|..+|++|+++|++++|+||+++||||+++|+             +++.+.|.++++++...
T Consensus       141 ~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-------------~~l~~~a~~~a~~~~~~  207 (714)
T TIGR02437       141 KLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTA-------------DKLGAAALQLLKDAING  207 (714)
T ss_pred             hcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-------------hHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999987             67889999999887665


Q ss_pred             cccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhcc
Q psy9060         301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTA  360 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~~  360 (366)
                      ...+.+.+..   +... .......+...++.+++++.++++++||||.+++++++....
T Consensus       208 ~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pap~~~~~~v~~~~~  263 (714)
T TIGR02437       208 KLDWKAKRQP---KLEP-LKLSKIEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAAR  263 (714)
T ss_pred             CCcccccCCC---Cccc-ccccchHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Confidence            3333322211   0000 000113344567888888999999999999999999988754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-43  Score=333.23  Aligned_cols=206  Identities=31%  Similarity=0.520  Sum_probs=181.4

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC---CHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK---TADQ  139 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~---~~~~  139 (366)
                      .+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++||| +|.| ++||+|+|++++....   ....
T Consensus         4 ~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl-~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (260)
T PRK05980          4 TVLIEIRDGIALLTLNRPE-KLNALNYALIDRLLARLDAIEVDESVRAVIL-TGAGDRAFSAGADIHEFSASVAAGADVA   81 (260)
T ss_pred             eEEEEEECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEE-EeCCCCceEcCcCHHHHhhhccccchhh
Confidence            5788889999999999998 7899999999999999999999999997654 7777 6999999999875421   1122


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+.+..+.++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe  137 (260)
T PRK05980         82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERA------------------------LFAKPE  137 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCC------------------------EecCcc
Confidence            33445556678889999999999999999999999999999999999876                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|++++++||+++||||+|+|+             +++.+.+.+++++++.
T Consensus       138 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~  204 (260)
T PRK05980        138 IRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPH-------------EELLPAARALARRIIR  204 (260)
T ss_pred             cccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCH-------------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             6789999999999998


Q ss_pred             Ccc-cccccC
Q psy9060         300 GKL-KINRIK  308 (366)
Q Consensus       300 ~~~-~~~~~~  308 (366)
                      .++ .+..+|
T Consensus       205 ~~p~a~~~~K  214 (260)
T PRK05980        205 HSPVAVAAIL  214 (260)
T ss_pred             CCHHHHHHHH
Confidence            765 333344

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-43  Score=332.09  Aligned_cols=204  Identities=27%  Similarity=0.473  Sum_probs=179.5

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++  +++++|| ++|.|+.||+|+|++++..... .....
T Consensus         2 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~--~~vr~vv-ltg~g~~F~aG~Dl~~~~~~~~-~~~~~   76 (255)
T PRK08150          2 SLVSYELDGGVATIGLNRPA-KRNALNDGLIAALRAAFARLP--EGVRAVV-LHGEGDHFCAGLDLSELRERDA-GEGMH   76 (255)
T ss_pred             ceEEEEeeCCEEEEEEcCCc-cccCCCHHHHHHHHHHHHHhh--cCCeEEE-EECCCCceecCcCHHHHhhccc-hhHHH
Confidence            35778889999999999998 799999999999999999987  7799655 5889999999999999864322 12223


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      ....++.++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        77 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~  132 (255)
T PRK08150         77 HSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADEST------------------------YFALPEGQR  132 (255)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCC------------------------EEecccccc
Confidence            34556778889999999999999999999999999999999999877                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..+|++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++|+..+.
T Consensus       133 Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~  199 (255)
T PRK08150        133 GIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPA-------------GEALDKAMELARRIAQNAP  199 (255)
T ss_pred             CCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-------------hHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999997             6789999999999998764


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +...|
T Consensus       200 ~a~~~~K  206 (255)
T PRK08150        200 LTNFAVL  206 (255)
T ss_pred             HHHHHHH
Confidence            3 33344

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-43  Score=332.21  Aligned_cols=206  Identities=33%  Similarity=0.528  Sum_probs=180.8

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++|+|| ++|.|+.||+|+||+++......+   
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~---   77 (257)
T PRK05862          3 YETILVETRGRVGLITLNRPK-ALNALNDALMDELGAALAAFDADEGIGAIV-ITGSEKAFAAGADIKEMADLSFMD---   77 (257)
T ss_pred             CceEEEEeeCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEE-EECCCCceECCcChHhHhccchhH---
Confidence            346788889999999999998 789999999999999999999999999755 578899999999999876432111   


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+...+..++.+|.++||||||+|||+|+|||++|+++||+||+++++                        +|++||++
T Consensus        78 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~  133 (257)
T PRK05862         78 VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA------------------------KFGQPEIK  133 (257)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCC------------------------EEeCchhc
Confidence            122334457788999999999999999999999999999999999876                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++++..+
T Consensus       134 ~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~  200 (257)
T PRK05862        134 LGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPA-------------DKLLDEALAAATTIASFS  200 (257)
T ss_pred             cCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCH-------------hHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999987             679999999999998875


Q ss_pred             c-cccccCC
Q psy9060         302 L-KINRIKP  309 (366)
Q Consensus       302 ~-~~~~~~~  309 (366)
                      . .+..+|.
T Consensus       201 ~~a~~~~K~  209 (257)
T PRK05862        201 LPAVMMAKE  209 (257)
T ss_pred             HHHHHHHHH
Confidence            4 3444453

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-43  Score=331.92  Aligned_cols=199  Identities=37%  Similarity=0.630  Sum_probs=179.2

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI  143 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~  143 (366)
                      .+.++++++|++|+||||+ + |++|.+|+++|.++++.++.|++|++|| ++|.|+.||+|+|++++...........+
T Consensus         3 ~i~~~~~~~v~~itl~rp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   79 (257)
T PRK07658          3 FLSVRVEDHVAVITLNHPP-A-NALSSQVLHELSELLDQVEKDDNVRVVV-IHGEGRFFSAGADIKEFTSVTEAEQATEL   79 (257)
T ss_pred             eEEEEeeCCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCceEeCcCHHHHhccCchhhHHHH
Confidence            5778889999999999997 5 9999999999999999999999999755 58889999999999988643322233334


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      ....+.++.++.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+++|
T Consensus        80 ~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~G  135 (257)
T PRK07658         80 AQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESA------------------------KLGLPELNLG  135 (257)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCC------------------------cccCcccccC
Confidence            4556778999999999999999999999999999999999999876                        9999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      ++|++|++++|++++|..+|++|+++|++++++||+++||||+++|+             +++.+.+.+++++++..++
T Consensus       136 l~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~~  201 (257)
T PRK07658        136 LIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE-------------ETLLDDAKKLAKKIAGKSP  201 (257)
T ss_pred             CCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCh-------------hHHHHHHHHHHHHHHhCCH
Confidence            99999999999999999999999999999999999999999999987             6788999999999988764

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-43  Score=335.06  Aligned_cols=209  Identities=29%  Similarity=0.509  Sum_probs=182.7

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC------
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK------  135 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~------  135 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++....      
T Consensus         5 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~~~~~   82 (272)
T PRK06142          5 YESFTVELADHVAQVTLNRPG-KGNAMNPAFWSELPEIFRWLDADPEVRAVV-LSGSGKHFSYGIDLPAMAGVFGQLGKD   82 (272)
T ss_pred             cceEEEEecCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCceecccCHHHHhhhccccccc
Confidence            356888999999999999999 799999999999999999999999999755 588899999999999875411      


Q ss_pred             ----CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccc
Q psy9060         136 ----TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDK  211 (366)
Q Consensus       136 ----~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~  211 (366)
                          .......+...+++++..+.++||||||+|||+|+|||++|+++||+||+++++                      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a----------------------  140 (272)
T PRK06142         83 GLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADA----------------------  140 (272)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCC----------------------
Confidence                111222334456778889999999999999999999999999999999999987                      


Q ss_pred             cccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHH
Q psy9060         212 KTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAV  291 (366)
Q Consensus       212 ~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~  291 (366)
                        +|++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+.            +++.+.+.
T Consensus       141 --~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~------------~~l~~~a~  206 (272)
T PRK06142        141 --KFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDA------------DALLAAAH  206 (272)
T ss_pred             --eecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCH------------HHHHHHHH
Confidence              9999999999999999999999999999999999999999999999999999999841            57889999


Q ss_pred             HHHHHHhcCccc-ccccC
Q psy9060         292 NTASQLASGKLK-INRIK  308 (366)
Q Consensus       292 ~~a~~la~~~~~-~~~~~  308 (366)
                      +++++|+..+.. +...|
T Consensus       207 ~~a~~ia~~~~~a~~~~K  224 (272)
T PRK06142        207 ATAREIAAKSPLAVRGTK  224 (272)
T ss_pred             HHHHHHHhCCHHHHHHHH
Confidence            999999987543 44444

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-43  Score=332.13  Aligned_cols=206  Identities=26%  Similarity=0.385  Sum_probs=182.5

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.+..|+++++|| ++|.|+.||+|+|++++........ 
T Consensus         2 ~~~~v~~~~~~~va~Itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~-   78 (258)
T PRK06190          2 TEPILLVETHDRVRTLTLNRPE-ARNALSAALRRALFAALAEADADDDVDVVV-LTGADPAFCAGLDLKELGGDGSAYG-   78 (258)
T ss_pred             CCceEEEEeeCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCCccCCcCHHHHhcccchhh-
Confidence            3457888999999999999998 789999999999999999999999999755 5788999999999998864322111 


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      .  ....+.++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~  132 (258)
T PRK06190         79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERA------------------------RFADTHA  132 (258)
T ss_pred             H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCC------------------------EEECccc
Confidence            1  2345678889999999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+++|+             +++.+.+.+++++|++.
T Consensus       133 ~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  199 (258)
T PRK06190        133 RVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPH-------------DELLPRARRLAASIAGN  199 (258)
T ss_pred             ccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCH-------------hHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999987             67899999999999987


Q ss_pred             cc-cccccC
Q psy9060         301 KL-KINRIK  308 (366)
Q Consensus       301 ~~-~~~~~~  308 (366)
                      +. .+...|
T Consensus       200 ~~~a~~~~K  208 (258)
T PRK06190        200 NPAAVRALK  208 (258)
T ss_pred             CHHHHHHHH
Confidence            64 344444

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-43  Score=333.90  Aligned_cols=209  Identities=24%  Similarity=0.398  Sum_probs=183.8

Q ss_pred             CCcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-CHH
Q psy9060          61 STKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-TAD  138 (366)
Q Consensus        61 ~~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-~~~  138 (366)
                      .++.+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|++||+|+||+++.... ...
T Consensus         9 ~~~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~   86 (268)
T PRK07327          9 DYPALRFDRPPPGVLEIVLNGPG-ALNAADARMHRELADIWRDVDRDPDVRVVL-IRGEGKAFSAGGDLALVEEMADDFE   86 (268)
T ss_pred             CCCeEEEEecCCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHhhhCCCceEEE-EECCCCCcccccCHHHHhhccCcHH
Confidence            356788887 5789999999998 789999999999999999999999999755 588889999999999875422 222


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+.....+++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  142 (268)
T PRK07327         87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDA------------------------RIIDG  142 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCC------------------------EEeCc
Confidence            233344455678889999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+++|+             +++.+.+.+++++|+
T Consensus       143 e~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la  209 (268)
T PRK07327        143 HTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-------------DELLPKALEVAERLA  209 (268)
T ss_pred             ccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             679999999999999


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      +.+.. +..+|
T Consensus       210 ~~~~~a~~~~K  220 (268)
T PRK07327        210 AGSQTAIRWTK  220 (268)
T ss_pred             cCCHHHHHHHH
Confidence            88653 33344

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=7.4e-43  Score=370.22  Aligned_cols=249  Identities=45%  Similarity=0.715  Sum_probs=208.7

Q ss_pred             EEeCCEEEEEecCC-CCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHH
Q psy9060          68 KAVGDVLVVTLDSP-GVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKS  146 (366)
Q Consensus        68 ~~~~~Va~Itlnrp-~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  146 (366)
                      +.+++|++|||||| + +.|++|.+|+++|.++++.++.|+++++|||++|.|++||+|+||+++....+......+...
T Consensus         6 ~~~~~Va~itlnrp~~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   84 (699)
T TIGR02440         6 VREDGIAILTIDVPGE-KMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQ   84 (699)
T ss_pred             EcCCCEEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHH
Confidence            34689999999999 5 789999999999999999999999999888778899999999999998643333334444556


Q ss_pred             HHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCC
Q psy9060         147 GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLP  226 (366)
Q Consensus       147 ~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p  226 (366)
                      +++++..+.++||||||+|||+|+|||++|+|+||+|||++++++                      +|++||+++|++|
T Consensus        85 ~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a----------------------~fg~pev~lGl~p  142 (699)
T TIGR02440        85 GQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKT----------------------VLGLPEVQLGLLP  142 (699)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCc----------------------EEechhhcccCCC
Confidence            678899999999999999999999999999999999999987656                      9999999999999


Q ss_pred             ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc
Q psy9060         227 GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR  306 (366)
Q Consensus       227 ~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~~~~  306 (366)
                      ++|++++|+|++|..+|++|+++|+.++++||+++||||+++|+             +++.+.|.++|++  ..+  .++
T Consensus       143 ~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~-------------~~l~~~a~~~A~~--~~~--~~~  205 (699)
T TIGR02440       143 GSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQ-------------SILLDTAVEMALK--GKP--IRK  205 (699)
T ss_pred             CccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecCh-------------hHHHHHHHHHHHh--CCC--CCC
Confidence            99999999999999999999999999999999999999999987             6788888988875  111  011


Q ss_pred             cCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhcc
Q psy9060         307 IKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFTA  360 (366)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~~  360 (366)
                      ...+. .++   ....+......++.+.+.+.++++|+||||.+++++++...+
T Consensus       206 ~~~~~-~~~---~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~  255 (699)
T TIGR02440       206 PLSLQ-ERL---LEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLA  255 (699)
T ss_pred             Cccch-hhh---cccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhc
Confidence            10110 111   122244556678888999999999999999999999987653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.8e-43  Score=331.41  Aligned_cols=208  Identities=30%  Similarity=0.457  Sum_probs=183.3

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .+.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.| ++||+|+|++++......+..
T Consensus         7 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-ltg~g~~~F~aG~Dl~~~~~~~~~~~~   84 (262)
T PRK06144          7 TDELLLEVRGGIARITFNRPA-ARNAMTWAMYEGLAEICEAIAADPSIRAVV-LRGAGDKAFVAGTDIAQFRAFSTAEDA   84 (262)
T ss_pred             CCceEEEeeCCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHHhcCCCceEEE-EecCCCCceecCcCHHHHhhccchhHH
Confidence            456888999999999999998 789999999999999999999999999765 47776 699999999987653222222


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+...+.+++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+
T Consensus        85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~  140 (262)
T PRK06144         85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSA------------------------RFGFPIA  140 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCC------------------------EeechhH
Confidence            3344556778889999999999999999999999999999999999987                        9999999


Q ss_pred             h-ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         221 M-LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       221 ~-~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      + +|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+.
T Consensus       141 ~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~i~~  207 (262)
T PRK06144        141 RTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVED-------------AALDARADALAELLAA  207 (262)
T ss_pred             HhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-------------HHHHHHHHHHHHHHHh
Confidence            7 9999999999999999999999999999999999999999999999997             7899999999999998


Q ss_pred             Cccc-ccccC
Q psy9060         300 GKLK-INRIK  308 (366)
Q Consensus       300 ~~~~-~~~~~  308 (366)
                      .+.. +...|
T Consensus       208 ~~~~a~~~~K  217 (262)
T PRK06144        208 HAPLTLRATK  217 (262)
T ss_pred             CCHHHHHHHH
Confidence            7643 44444

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=6.9e-43  Score=330.46  Aligned_cols=208  Identities=34%  Similarity=0.608  Sum_probs=183.6

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.| +.||+|+|++++.... ...
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vv-l~g~g~~~F~aG~Dl~~~~~~~-~~~   78 (260)
T PRK05809          2 ELKNVILEKEGHIAVVTINRPK-ALNALNSETLKELDTVLDDIENDDNVYAVI-LTGAGEKAFVAGADISEMKDLN-EEE   78 (260)
T ss_pred             CcceEEEEEeCCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHhcCCCcEEEE-EEcCCCCceeeCcChHhHhccC-hHH
Confidence            3567888999999999999998 789999999999999999999999999755 57777 8999999999886532 222


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+....++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a------------------------~f~~pe  134 (260)
T PRK05809         79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKA------------------------KFGQPE  134 (260)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCC------------------------EEeCcc
Confidence            33344455678899999999999999999999999999999999999876                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++++.
T Consensus       135 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~  201 (260)
T PRK05809        135 VGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEP-------------EKLMEEAKALANKIAA  201 (260)
T ss_pred             cccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-------------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             6788999999999998


Q ss_pred             Cccc-ccccC
Q psy9060         300 GKLK-INRIK  308 (366)
Q Consensus       300 ~~~~-~~~~~  308 (366)
                      .+.. +...|
T Consensus       202 ~~~~a~~~~K  211 (260)
T PRK05809        202 NAPIAVKLCK  211 (260)
T ss_pred             CCHHHHHHHH
Confidence            7543 43344

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.1e-42  Score=369.47  Aligned_cols=253  Identities=46%  Similarity=0.761  Sum_probs=211.0

Q ss_pred             ceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          64 HFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        64 ~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      .+.+++ +++|++|+||||+.+.|++|.+|+++|.++++.++.|++++++||+++.+++||+|+||+++....+......
T Consensus         6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~   85 (708)
T PRK11154          6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA   85 (708)
T ss_pred             eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence            466777 6899999999993278999999999999999999999999987775555689999999999865333333334


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +...++.++.++.++||||||+|||+|+|||++|+++||+||+++++++                      +|++||+++
T Consensus        86 ~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a----------------------~fg~pe~~l  143 (708)
T PRK11154         86 LARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKT----------------------VLGLPEVQL  143 (708)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCc----------------------eEeCccccC
Confidence            4556677899999999999999999999999999999999999998666                      899999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..+|++|+++|++++|+||+++||||+++|+             +++.+.+.++|+++...  
T Consensus       144 Gl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~A~~~~~~--  208 (708)
T PRK11154        144 GLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPH-------------SILLEVAVELAKKGKPA--  208 (708)
T ss_pred             CCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-------------HHHHHHHHHHHHhcCCc--
Confidence            999999999999999999999999999999999999999999999987             67888999999874211  


Q ss_pred             cccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060         303 KINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT  359 (366)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~  359 (366)
                        ++..+.. ..   .....+..+...+..++.++.++++|+||||..++++++...
T Consensus       209 --~~~~~~~-~~---~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~  259 (708)
T PRK11154        209 --RRPLPVR-ER---LLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGL  259 (708)
T ss_pred             --cCcCCch-hh---hcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Confidence              1111110 00   011224456778999999999999999999999999998754

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-43  Score=331.68  Aligned_cols=204  Identities=27%  Similarity=0.399  Sum_probs=174.9

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS  144 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  144 (366)
                      |.++++++|++||||||+ +.|++|.+|+++|.++++.++.|++++++| ++|.|+.||+|+|++++....... ...+.
T Consensus         1 ~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vrvvv-l~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~   77 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPA-KRNAFDSAMLDDLALALGEYEADDELRVAV-LFAHGEHFTAGLDLADVAPKLAAG-GFPFP   77 (255)
T ss_pred             CeEEEECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEE-EECCCCCCcCCcCHHHHhhccccc-hhhhh
Confidence            356778999999999998 789999999999999999999999999754 588999999999999875421111 11121


Q ss_pred             HH-HHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         145 KS-GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       145 ~~-~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      .. ...+...+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++|
T Consensus        78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe~~~G  133 (255)
T PRK06563         78 EGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNT------------------------RFAQLEVQRG  133 (255)
T ss_pred             hhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCC------------------------EEeChhhhcC
Confidence            11 2223345889999999999999999999999999999999987                        9999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  303 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~  303 (366)
                      ++|++|++++|++++|..+|++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++++..+..
T Consensus       134 l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~  200 (255)
T PRK06563        134 ILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-------------GEQLERAIELAERIARAAPL  200 (255)
T ss_pred             CCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-------------HHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999999999999999999999987             67899999999999877543


Q ss_pred             -ccccC
Q psy9060         304 -INRIK  308 (366)
Q Consensus       304 -~~~~~  308 (366)
                       +...|
T Consensus       201 a~~~~K  206 (255)
T PRK06563        201 GVQATL  206 (255)
T ss_pred             HHHHHH
Confidence             33344

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=3.1e-43  Score=332.29  Aligned_cols=209  Identities=39%  Similarity=0.645  Sum_probs=183.0

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      +..+.++.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++||+|| ++|.|++||+|+||+++..........
T Consensus         4 ~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vv-ltg~g~~FsaG~Dl~~~~~~~~~~~~~   81 (257)
T COG1024           4 YETILVEREDGIAVITLNRPE-KLNALNLEMLDELAEALDEAEADPDVRVVV-LTGAGKAFSAGADLKELLSPEDGNAAE   81 (257)
T ss_pred             CCeeEEEeeCCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCceecccCHHHHhcccchhHHH
Confidence            456778888889999999999 679999999999999999999999999755 588889999999999987511112222


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+....+.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||++
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a------------------------~f~~pe~~  137 (257)
T COG1024          82 NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA------------------------KFGLPEVN  137 (257)
T ss_pred             HHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCc------------------------EecCcccc
Confidence            455666789999999999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|++++|+|++|..++++|++||+.++++||+++||||+++++.            +++++.+.+++++++..+
T Consensus       138 iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~------------~~l~~~a~~~a~~~a~~~  205 (257)
T COG1024         138 LGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDA------------EELLERALELARRLAAPP  205 (257)
T ss_pred             cccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCH------------HHHHHHHHHHHHHHccCH
Confidence            99999889999999999999999999999999999999999999999851            589999999999998744


Q ss_pred             ccccccC
Q psy9060         302 LKINRIK  308 (366)
Q Consensus       302 ~~~~~~~  308 (366)
                      ..+..+|
T Consensus       206 ~a~~~~k  212 (257)
T COG1024         206 LALAATK  212 (257)
T ss_pred             HHHHHHH
Confidence            4444443

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=4.5e-43  Score=331.60  Aligned_cols=208  Identities=20%  Similarity=0.349  Sum_probs=178.3

Q ss_pred             cceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060          63 KHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        63 ~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      +.+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.| ++||+|+|++++.........
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~el~~~l~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~~~~~~~   79 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQ-VRNAFRPLTVKEIIQALDDAREDPDIGVVI-LTGAGDKAFCSGGDQKVRGDYGYIDDS   79 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EEeCCCCceEeCcChHhHhhccccchh
Confidence            3477888 7999999999998 789999999999999999999999999755 57777 799999999987432110110


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      .........++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~  135 (259)
T TIGR01929        80 GVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENA------------------------RFGQTGP  135 (259)
T ss_pred             hHHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCC------------------------EecCccc
Confidence            0001123467788999999999999999999999999999999999876                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|++++++||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       136 ~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~  202 (259)
T TIGR01929       136 KVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPL-------------ADLEKETVRWCREILQK  202 (259)
T ss_pred             ccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCH-------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999997             78999999999999987


Q ss_pred             ccc-ccccCC
Q psy9060         301 KLK-INRIKP  309 (366)
Q Consensus       301 ~~~-~~~~~~  309 (366)
                      +.. +..+|.
T Consensus       203 ~~~a~~~~K~  212 (259)
T TIGR01929       203 SPMAIRMLKA  212 (259)
T ss_pred             CHHHHHHHHH
Confidence            643 444453

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=7.7e-43  Score=329.30  Aligned_cols=203  Identities=33%  Similarity=0.543  Sum_probs=179.7

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI  143 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~  143 (366)
                      .+.++++++|++||||||+ +.|++|.+|+++|.++++.++.|++||+|| ++|.|+.||+|+|++++......   ..+
T Consensus         3 ~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~~~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~---~~~   77 (255)
T PRK09674          3 ELLVSRQQRVLLLTLNRPE-ARNALNNALLTQLVNELEAAATDTSIGVCV-ITGNARFFAAGADLNEMAEKDLA---ATL   77 (255)
T ss_pred             eEEEEeECCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCcEEEE-EECCCCceecccChHhHhccchh---hhH
Confidence            4677888999999999999 789999999999999999999999999755 58899999999999987542211   122


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      .....+++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++|
T Consensus        78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~G  133 (255)
T PRK09674         78 NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENA------------------------RFGLPEITLG  133 (255)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCC------------------------EEeCchhhcC
Confidence            2344567889999999999999999999999999999999999987                        9999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  303 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~  303 (366)
                      ++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++++..+..
T Consensus       134 l~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a~~l~~~~~~  200 (255)
T PRK09674        134 IMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPP-------------ELTLERALQLASKIARHSPL  200 (255)
T ss_pred             CCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh-------------HHHHHHHHHHHHHHHhCCHH
Confidence            99999999999999999999999999999999999999999999987             67889999999999987643


Q ss_pred             -ccccC
Q psy9060         304 -INRIK  308 (366)
Q Consensus       304 -~~~~~  308 (366)
                       +..+|
T Consensus       201 a~~~~K  206 (255)
T PRK09674        201 ALRAAK  206 (255)
T ss_pred             HHHHHH
Confidence             44444

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=5.9e-43  Score=330.30  Aligned_cols=206  Identities=20%  Similarity=0.306  Sum_probs=179.8

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      +.+.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.| +.||+|+||+++......  ..
T Consensus         2 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-l~g~g~~~F~aG~Dl~~~~~~~~~--~~   77 (256)
T TIGR03210         2 EDILYEKRNGIAWIMINRPA-KMNAFRGQTCDELIHALKDAGYDRQIGVIV-LAGAGDKAFCTGGDQSTHDGGYDG--RG   77 (256)
T ss_pred             CceEEEeeCCEEEEEEcCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EecCCCCceecCcChHHHhccccc--hh
Confidence            45788889999999999999 899999999999999999999999999765 47776 699999999987432111  11


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+......++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||++
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~~  133 (256)
T TIGR03210        78 TIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKA------------------------QFGQVGPK  133 (256)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCC------------------------EEeccccc
Confidence            122345678889999999999999999999999999999999999887                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|+++++++|++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.+++++|+..+
T Consensus       134 ~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ia~~~  200 (256)
T TIGR03210       134 VGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPH-------------DQLDAEVQKWCDEIVEKS  200 (256)
T ss_pred             ccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCH-------------HHHHHHHHHHHHHHHhCC
Confidence            9999888889999999999999999999999999999999999999987             679999999999999876


Q ss_pred             cc-ccccCC
Q psy9060         302 LK-INRIKP  309 (366)
Q Consensus       302 ~~-~~~~~~  309 (366)
                      .. +..+|.
T Consensus       201 ~~a~~~~K~  209 (256)
T TIGR03210       201 PTAIAIAKR  209 (256)
T ss_pred             HHHHHHHHH
Confidence            43 444453

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.2e-43  Score=331.05  Aligned_cols=208  Identities=21%  Similarity=0.389  Sum_probs=182.3

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      ....+.++.+++|++|+||||+ +.|++|.+|+++|.++++.++.|++|+++| ++|.|+.||+|+|++++.........
T Consensus         9 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (266)
T PRK08139          9 EAPLLLREDRDGVATLTLNRPQ-AFNALSEAMLAALQAALDAIAADPSVRVVV-LAAAGKAFCAGHDLKEMRAARGLAYF   86 (266)
T ss_pred             cCCceEEEeeCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEE-EecCCCcceeccCHHHHhcccchhHH
Confidence            4467888899999999999998 789999999999999999999999999755 58899999999999987643222233


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~  142 (266)
T PRK08139         87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTA------------------------RFAVPGV  142 (266)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCC------------------------EEeCccc
Confidence            3444556778899999999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|+++ +.+|+|++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       143 ~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  208 (266)
T PRK08139        143 NIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPA-------------DALDAAVARLAAVIAAK  208 (266)
T ss_pred             CcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeCh-------------hHHHHHHHHHHHHHHhC
Confidence            999999865 5689999999999999999999999999999999999997             67899999999999987


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +...|
T Consensus       209 ~~~a~~~~K  217 (266)
T PRK08139        209 SPAAVRIGK  217 (266)
T ss_pred             CHHHHHHHH
Confidence            643 33344

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.2e-43  Score=329.96  Aligned_cols=207  Identities=27%  Similarity=0.454  Sum_probs=179.9

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TADQ  139 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~~  139 (366)
                      ++.+.++.+++|++|+||||+ +.|++|.+|+++|.+++++++ |+++++|| ++|.|+.||+|+|++++....  ....
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~~~~~~-d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~   79 (262)
T PRK08140          3 YETILLAIEAGVATLTLNRPD-KLNSFTREMHRELREALDQVE-DDGARALL-LTGAGRGFCAGQDLADRDVTPGGAMPD   79 (262)
T ss_pred             CceEEEEeECCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHhc-CCCceEEE-EECCCCCcccCcChHHHhccccccchh
Confidence            456888899999999999998 789999999999999999999 99999655 588999999999999875321  1111


Q ss_pred             -HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         140 -VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       140 -~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                       ...+...+..++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  135 (262)
T PRK08140         80 LGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSA------------------------SFIQA  135 (262)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCC------------------------EEecc
Confidence             11222334567888999999999999999999999999999999999987                        89999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..++++|+++|++++++||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       136 e~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ia  202 (262)
T PRK08140        136 FVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDD-------------AALADEAQQLAAHLA  202 (262)
T ss_pred             ccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeCh-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             678899999999998


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      ..+.. +..+|
T Consensus       203 ~~~~~a~~~~K  213 (262)
T PRK08140        203 TQPTRGLALIK  213 (262)
T ss_pred             hCCHHHHHHHH
Confidence            87643 44444

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.9e-43  Score=329.43  Aligned_cols=206  Identities=31%  Similarity=0.489  Sum_probs=180.3

Q ss_pred             cceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060          63 KHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        63 ~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .++.++. +++|++|+||||+ +.|++|.+|+++|.++++.++.|++||+|| ++|.| ++||+|+|++++.... ....
T Consensus         6 ~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~~-~~~~   82 (256)
T PRK06143          6 AHAGVTRDDRGVATLTIRNAG-SLNILGTPVILALTQALRWLAADPDVRVLV-LRGAGEKAFIGGADIKEMATLD-QASA   82 (256)
T ss_pred             ccceeeecCCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhcCCCcEEEE-EEeCCCCcccCCcCHHHHhhcC-hhhH
Confidence            4566774 5889999999999 789999999999999999999999999755 57777 6999999999886432 2233


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+...++.++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~  138 (256)
T PRK06143         83 EAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDA------------------------QFGMPEV  138 (256)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCC------------------------EEeCCcc
Confidence            3445566788999999999999999999999999999999999999877                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|+ |++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++++..
T Consensus       139 ~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~  204 (256)
T PRK06143        139 RVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPL-------------AELDAAVERLAASLAGC  204 (256)
T ss_pred             ccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-------------HHHHHHHHHHHHHHHcC
Confidence            9997 888889999999999999999999999999999999999999987             78999999999999987


Q ss_pred             ccc-ccccCC
Q psy9060         301 KLK-INRIKP  309 (366)
Q Consensus       301 ~~~-~~~~~~  309 (366)
                      +.. +..+|.
T Consensus       205 ~~~a~~~~K~  214 (256)
T PRK06143        205 GPQALRQQKR  214 (256)
T ss_pred             CHHHHHHHHH
Confidence            643 444453

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=9.9e-43  Score=328.71  Aligned_cols=205  Identities=27%  Similarity=0.421  Sum_probs=177.7

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-HHH-HHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-ADQ-VKQ  142 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-~~~-~~~  142 (366)
                      +.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|+ +++|| ++|.|+.||+|+|++++..... ... ...
T Consensus         1 ~~~e~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~-v~~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   77 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPD-KLNSFTAEMHLELREALERVERDD-ARALM-LTGAGRGFCAGQDLSERNPTPGGAPDLGRT   77 (256)
T ss_pred             CeEEEECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCC-cEEEE-EECCCCCcccCcCHHHHhhccccchhHHHH
Confidence            356788999999999998 789999999999999999999998 99755 5888999999999998764211 111 112


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +...+..++..+..+||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        78 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a------------------------~f~~pe~~l  133 (256)
T TIGR02280        78 IETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESA------------------------RFIQAFAKI  133 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCC------------------------EEeChhhhc
Confidence            22334567788999999999999999999999999999999999987                        899999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++++..+.
T Consensus       134 G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~  200 (256)
T TIGR02280       134 GLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDD-------------AALMDEAQALAVHLAAQPT  200 (256)
T ss_pred             CCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeCh-------------HHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999997             6789999999999988764


Q ss_pred             -cccccCC
Q psy9060         303 -KINRIKP  309 (366)
Q Consensus       303 -~~~~~~~  309 (366)
                       .+..+|.
T Consensus       201 ~~~~~~K~  208 (256)
T TIGR02280       201 RGLALTKR  208 (256)
T ss_pred             HHHHHHHH
Confidence             3444443

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-42  Score=328.49  Aligned_cols=204  Identities=30%  Similarity=0.497  Sum_probs=179.6

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      .+.++++++|++||||||+ + |++|.+|+.+|.++++.++.|+++++|| ++|.| ++||+|+||+++.... ......
T Consensus         4 ~v~~~~~~~v~~itlnrp~-~-Nal~~~~~~~l~~al~~~~~d~~vrvvV-l~g~g~~~F~aG~Dl~~~~~~~-~~~~~~   79 (258)
T PRK09076          4 ELDLEIDGHVAILTLNNPP-A-NTWTADSLQALKQLVLELNADKDVYALV-ITGDGEKFFSAGADLNLFADGD-KAVARE   79 (258)
T ss_pred             EEEEEEECCEEEEEECCCC-c-CCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCceEeCcCHHHHhhcC-hhhHHH
Confidence            5788889999999999997 5 9999999999999999999999999755 57776 6899999999875422 222233


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +...+.+++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        80 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~  135 (258)
T PRK09076         80 MARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQA------------------------QMALPEASV  135 (258)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCC------------------------EeeCccccc
Confidence            44556778899999999999999999999999999999999999877                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++++..+.
T Consensus       136 Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~~  202 (258)
T PRK09076        136 GLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEK-------------GEAREAALALAQKVANQSP  202 (258)
T ss_pred             CCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCc-------------hhHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999997             6788899999999998764


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +...|
T Consensus       203 ~a~~~~K  209 (258)
T PRK09076        203 SAVAACK  209 (258)
T ss_pred             HHHHHHH
Confidence            3 43344

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.6e-43  Score=330.50  Aligned_cols=207  Identities=24%  Similarity=0.428  Sum_probs=180.5

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCH-HHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-----H
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNS-EVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-----A  137 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~-~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-----~  137 (366)
                      .+.++++++|++||||||+ +.|++|. +|+++|.++++.++.|++|++|| ++|.|++||+|+||+++.....     .
T Consensus         4 ~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (266)
T PRK09245          4 FLLVERDGHIVTLTMNRPE-TRNALSDNDAVDALVAACAAINADRSVRAVI-LTGAGTAFSSGGNVKDMRARVGAFGGSP   81 (266)
T ss_pred             ceEEEEECCEEEEEECCcc-cccCCChHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcccCcCHHHHhhccccccccc
Confidence            5788889999999999998 7899995 99999999999999999999755 5889999999999998854211     1


Q ss_pred             HH-HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccc
Q psy9060         138 DQ-VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLG  216 (366)
Q Consensus       138 ~~-~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (366)
                      .. ...+...+.+++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~  137 (266)
T PRK09245         82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETA------------------------RFA  137 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCC------------------------EEc
Confidence            11 12233345677889999999999999999999999999999999999887                        999


Q ss_pred             ccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         217 LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       217 ~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      +||+++|++|++|+++++++++|..+|++|+++|++++|+||+++||||+|+|+             +++++.+.+++++
T Consensus       138 ~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~  204 (266)
T PRK09245        138 ESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPA-------------DQLLPAARALAER  204 (266)
T ss_pred             ccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987             6788999999999


Q ss_pred             HhcCccc-ccccCC
Q psy9060         297 LASGKLK-INRIKP  309 (366)
Q Consensus       297 la~~~~~-~~~~~~  309 (366)
                      |+..+.. +..+|.
T Consensus       205 l~~~~~~a~~~~K~  218 (266)
T PRK09245        205 IAANPPHALRLTKR  218 (266)
T ss_pred             HHhCCHHHHHHHHH
Confidence            9988653 433443

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-42  Score=328.88  Aligned_cols=205  Identities=32%  Similarity=0.497  Sum_probs=180.3

Q ss_pred             CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .+++.++. +++|++|+||||+ +.|++|.+|+.+|.++++.+++|+++++|| ++|.|+.||+|+|++++.....   .
T Consensus         6 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~---~   80 (261)
T PRK08138          6 TDVVLLERPADGVALLRLNRPE-ARNALNMEVRQQLAEHFTELSEDPDIRAIV-LTGGEKVFAAGADIKEFATAGA---I   80 (261)
T ss_pred             CCCEEEEEccCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEE-EECCCCCeeCCcCHHHHhccch---h
Confidence            45677777 6889999999999 789999999999999999999999999755 5788899999999998764221   1


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+....++++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~  136 (261)
T PRK08138         81 EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESA------------------------SFGQPEI  136 (261)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCC------------------------EeeCccc
Confidence            2233455678889999999999999999999999999999999999876                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++++..
T Consensus       137 ~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~  203 (261)
T PRK08138        137 KVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVED-------------EQTLPRALELAREIARM  203 (261)
T ss_pred             ccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-------------hHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             67888999999999876


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +..+|
T Consensus       204 ~~~a~~~~K  212 (261)
T PRK08138        204 PPLALAQIK  212 (261)
T ss_pred             CHHHHHHHH
Confidence            543 33344

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-42  Score=328.95  Aligned_cols=208  Identities=25%  Similarity=0.422  Sum_probs=179.7

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TADQ  139 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~~  139 (366)
                      ++.+.++.+++|++||||||+ +.|++|.+|+++|.++++.++.|+++|+|| ++|.|+.||+|+|++++....  +...
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (262)
T PRK05995          3 YETLEIEQRGQVATVTLNRPD-VRNAFNETVIAELTAAFRALDADDSVRAVV-LAGAGKAFCAGADLNWMKKMAGYSDDE   80 (262)
T ss_pred             CceEEEEeeCCEEEEEEcCcc-cccCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCccccCcCHHHHhhhcccCchh
Confidence            566888999999999999998 789999999999999999999999999755 588899999999999875321  1111


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      .......+.+++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe  136 (262)
T PRK05995         81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHA------------------------VFCLSE  136 (262)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCC------------------------EEeCcc
Confidence            11223345678889999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++ ++++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.+++++++.
T Consensus       137 ~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~  202 (262)
T PRK05995        137 VRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPA-------------EALDAKVDELLAALVA  202 (262)
T ss_pred             cccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCH-------------HHHHHHHHHHHHHHHh
Confidence            999999988765 58999999999999999999999999999999999987             6789999999999998


Q ss_pred             Cccc-ccccCC
Q psy9060         300 GKLK-INRIKP  309 (366)
Q Consensus       300 ~~~~-~~~~~~  309 (366)
                      .+.. +..+|.
T Consensus       203 ~~~~a~~~~K~  213 (262)
T PRK05995        203 NSPQAVRAGKR  213 (262)
T ss_pred             CCHHHHHHHHH
Confidence            7543 444443

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=3.8e-42  Score=365.65  Aligned_cols=253  Identities=32%  Similarity=0.519  Sum_probs=210.8

Q ss_pred             ceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHHH
Q psy9060          64 HFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQV  140 (366)
Q Consensus        64 ~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~~  140 (366)
                      .+.++. +++|++||||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+||+++...  ......
T Consensus         7 ~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~~~~   84 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPG-SVNKLDRATLASLGEALDALEAQSDLKGLL-LTSAKDAFIVGADITEFLSLFAAPEEEL   84 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCcEEEE-EECCCCccccCcCHHHHhhhccCCHHHH
Confidence            466774 7899999999999 799999999999999999999999999765 57888999999999988642  122233


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+...++.++.++.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        85 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a------------------------~f~~pe~  140 (715)
T PRK11730         85 SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDA------------------------RIGLPET  140 (715)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCC------------------------EEeCchh
Confidence            4455566788899999999999999999999999999999999999877                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|+|++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.+++++++..
T Consensus       141 ~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  207 (715)
T PRK11730        141 KLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAP-------------EKLQEAALALLKQAIAG  207 (715)
T ss_pred             hcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-------------HHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999987             67889999999999987


Q ss_pred             cccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060         301 KLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT  359 (366)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~  359 (366)
                      +..++..+. . .... ... ........+..+++.+.++++++||+|.++++++....
T Consensus       208 ~~~~~~~~~-~-~~~p-~a~-~~~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~i~~~~  262 (715)
T PRK11730        208 KLDWKARRQ-P-KLEP-LKL-SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAA  262 (715)
T ss_pred             CCccccccC-c-cccc-ccc-cchhHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHh
Confidence            544433221 0 0000 000 11233446677777788899999999999999997643

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-42  Score=327.36  Aligned_cols=206  Identities=35%  Similarity=0.630  Sum_probs=182.4

Q ss_pred             cceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060          63 KHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        63 ~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      +++.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.| +.||+|+|++++.... ....
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~v~~vV-l~g~g~~~F~aG~Dl~~~~~~~-~~~~   79 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPR-AANALSLALLEELQNILTQINEEANVRVVI-LTGAGEKAFCAGADLKERAGMN-EEQV   79 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCc-ccCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EecCCCCceEcCcChHhhhcCC-hhhH
Confidence            4678886 7899999999998 789999999999999999999999999755 47777 5999999999885422 2333


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+...++.++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~  135 (260)
T PRK07657         80 RHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESA------------------------SLGLTET  135 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCC------------------------EEcCchh
Confidence            4445566788999999999999999999999999999999999999876                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..++++|+++|++++++||+++||||+++|+             +++++.+.+++++++..
T Consensus       136 ~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~  202 (260)
T PRK07657        136 TLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPA-------------HLLEEKAIEIAEKIASN  202 (260)
T ss_pred             ccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             67999999999999987


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +..+|
T Consensus       203 ~~~a~~~~K  211 (260)
T PRK07657        203 GPIAVRQAK  211 (260)
T ss_pred             CHHHHHHHH
Confidence            543 44444

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-42  Score=327.67  Aligned_cols=209  Identities=27%  Similarity=0.488  Sum_probs=183.4

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC-CHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK-TAD  138 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~-~~~  138 (366)
                      +.+.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++|| ++|.| ++||+|+|++++.... ...
T Consensus         9 ~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~~FcaG~Dl~~~~~~~~~~~   86 (269)
T PRK06127          9 PTGKLLAEKTGGLGRITFNNPA-RHNAMSLDMWEALPQALAAAEDDDAIRVVV-LTGAGEKAFVSGADISQFEESRSDAE   86 (269)
T ss_pred             CCCceEEEEECCEEEEEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EEeCCCCceecCcCHHHHhhcccchH
Confidence            3456888999999999999998 799999999999999999999999999765 57776 7999999999876421 222


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+......++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a------------------------~f~~p  142 (269)
T PRK06127         87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDS------------------------RFGIP  142 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCC------------------------EeeCc
Confidence            233344555678889999999999999999999999999999999999976                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..++++|+++|++++++||+++||||+|+|+             +++.+.+.+++++++
T Consensus       143 e~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~  209 (269)
T PRK06127        143 AARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAA-------------DDLETALADYAATIA  209 (269)
T ss_pred             hhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             789999999999998


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      ..+.. +..+|
T Consensus       210 ~~~~~a~~~~K  220 (269)
T PRK06127        210 GNAPLTLRAAK  220 (269)
T ss_pred             hCCHHHHHHHH
Confidence            77543 44444

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-42  Score=326.34  Aligned_cols=204  Identities=25%  Similarity=0.427  Sum_probs=179.3

Q ss_pred             ceeEEEeCC---EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          64 HFKEKAVGD---VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        64 ~i~~~~~~~---Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .+.++++++   |++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+|++++......  .
T Consensus         4 ~i~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~--~   79 (251)
T PRK06023          4 HILVERPGAHPGVQVIRFNRPE-KKNAITRAMYATMAKALKAADADDAIRAHV-FLGTEGCFSAGNDMQDFLAAAMG--G   79 (251)
T ss_pred             eEEEEeecCcCcEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCeecCcCHHHHhhcccc--c
Confidence            477787764   9999999999 789999999999999999999999999755 58899999999999987542111  1


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+...+.+++..+.++||||||+|||+|+|||++|+++|||||+++++                        +|++||+
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a------------------------~f~~pe~  135 (251)
T PRK06023         80 TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRS------------------------LFRTPFV  135 (251)
T ss_pred             hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCC------------------------EecCccc
Confidence            1223345678889999999999999999999999999999999999887                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|+++++++++|..++++++++|+.++++||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       136 ~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~  202 (251)
T PRK06023        136 DLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDE-------------EAVEAETLKAAEELAAK  202 (251)
T ss_pred             ccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             67999999999999988


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +...|
T Consensus       203 ~~~a~~~~K  211 (251)
T PRK06023        203 PPQALQIAR  211 (251)
T ss_pred             CHHHHHHHH
Confidence            653 33344

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=1.9e-42  Score=330.13  Aligned_cols=207  Identities=26%  Similarity=0.483  Sum_probs=178.4

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC------C--
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK------T--  136 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~------~--  136 (366)
                      +.++.+++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++....      +  
T Consensus        10 ~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vrvvV-ltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   87 (275)
T PLN02664         10 IQKSPNSSVFHLNLNRPS-QRNALSLDFFTEFPKALSSLDQNPNVSVII-LSGAGDHFCSGIDLKTLNSISEQSSSGDRG   87 (275)
T ss_pred             EEecCCCCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EECCCCceeeCcChHHhhhcccccccccch
Confidence            444557899999999999 789999999999999999999999999654 588999999999999875421      1  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         137 --ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       137 --~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                        ......+...+++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +
T Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~  143 (275)
T PLN02664         88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA------------------------F  143 (275)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCC------------------------E
Confidence              01222333455678889999999999999999999999999999999999987                        9


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      |++||+++|+.|++|++++|++++|..+|++|+++|+.++++||+++||||+|||+.            +++.+.+.+++
T Consensus       144 f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~------------~~l~~~~~~~a  211 (275)
T PLN02664        144 FSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSK------------EDLDEGVRLIA  211 (275)
T ss_pred             eccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCCh------------hHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999841            56888899999


Q ss_pred             HHHhcCccc-ccccCC
Q psy9060         295 SQLASGKLK-INRIKP  309 (366)
Q Consensus       295 ~~la~~~~~-~~~~~~  309 (366)
                      ++|+..++. +..+|.
T Consensus       212 ~~ia~~~p~a~~~~K~  227 (275)
T PLN02664        212 EGIAAKSPLAVTGTKA  227 (275)
T ss_pred             HHHHhCCHHHHHHHHH
Confidence            999987643 444443

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-42  Score=326.49  Aligned_cols=208  Identities=26%  Similarity=0.391  Sum_probs=182.9

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC---HHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---ADQ  139 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~---~~~  139 (366)
                      +++.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++++| ++|.|++||+|+|++++.....   ...
T Consensus         2 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (255)
T PRK07260          2 EHIIYEVEDDLATLTLNRPE-VSNGFNIPMCQEILEALRLAEEDPSVRFLL-INANGKVFSVGGDLVEMKRAVDEDDVQS   79 (255)
T ss_pred             CceEEEEECCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcccccCHHHHHhhccccchhh
Confidence            45788888999999999998 789999999999999999999999999755 5889999999999998864211   122


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+.+.+++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a------------------------~f~~pe  135 (255)
T PRK07260         80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKT------------------------KFIQAF  135 (255)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCC------------------------EEechH
Confidence            22334456778889999999999999999999999999999999999987                        899999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..++++|+++|++++|+||+++||||+++|+             +++.+.+.++++++++
T Consensus       136 ~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~  202 (255)
T PRK07260        136 VGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAES-------------EKLEKTCEQLLKKLRR  202 (255)
T ss_pred             hhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCH-------------hHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999987             6789999999999998


Q ss_pred             Ccc-cccccCC
Q psy9060         300 GKL-KINRIKP  309 (366)
Q Consensus       300 ~~~-~~~~~~~  309 (366)
                      .+. .+...|.
T Consensus       203 ~~~~a~~~~K~  213 (255)
T PRK07260        203 GSSNSYAAIKS  213 (255)
T ss_pred             CCHHHHHHHHH
Confidence            754 3444453

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-42  Score=327.17  Aligned_cols=199  Identities=30%  Similarity=0.502  Sum_probs=180.3

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      ..+.++++++|++|+||||+ +.|++|.+++++|.++++.++.|++++++| ++|.|+.||+|+|++++.......  ..
T Consensus         5 ~~i~~~~~~~v~~i~lnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~--~~   80 (259)
T PRK06688          5 TDLLVELEDGVLTITINRPD-KKNALTAAMYQALADALEAAATDPAVRVVV-LTGAGRAFSAGGDIKDFPKAPPKP--PD   80 (259)
T ss_pred             CceEEEEECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCccCccCHHHHhccCcch--HH
Confidence            45788899999999999998 789999999999999999999999999755 578889999999999886532221  33


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +...+++++..+.++|||+||+|||+|+|||++|+++|||||+++++                        +|++||+++
T Consensus        81 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe~~~  136 (259)
T PRK06688         81 ELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESA------------------------KFSLPFAKL  136 (259)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCC------------------------EecCchhhc
Confidence            45566788999999999999999999999999999999999999876                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|+++++++++|..+|++|+++|++++++||+++||||+++|+             +++.+.+.+++++++..+.
T Consensus       137 G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~a~~~a~~i~~~~~  203 (259)
T PRK06688        137 GLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPA-------------AELDAEADAQAAKLAAGPA  203 (259)
T ss_pred             CCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999987             6788999999999988754

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-42  Score=328.45  Aligned_cols=208  Identities=25%  Similarity=0.410  Sum_probs=177.1

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++|| ++|.|+.||+|+|++++..........
T Consensus         4 ~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (263)
T PRK07799          4 GPHALVEQRGHTLIVTMNRPE-ARNALSTEMLRIMVDAWDRVDNDPDIRSCI-LTGAGGAFCAGMDLKAATKKPPGDSFK   81 (263)
T ss_pred             CceEEEEEECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCccccccCHHHHhhccccchhh
Confidence            356888899999999999998 789999999999999999999999999755 588889999999999886432111111


Q ss_pred             -H-H-HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         142 -Q-I-SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       142 -~-~-~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                       . + ...+.. +.++..+||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        82 ~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  136 (263)
T PRK07799         82 DGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESA------------------------KFGIS  136 (263)
T ss_pred             hhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCC------------------------EecCc
Confidence             0 1 111222 345789999999999999999999999999999999876                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++++
T Consensus       137 e~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~~~  203 (263)
T PRK07799        137 EAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPD-------------GQALDKALELAELIN  203 (263)
T ss_pred             ccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCc-------------chHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997             567888999999998


Q ss_pred             cCccc-ccccCC
Q psy9060         299 SGKLK-INRIKP  309 (366)
Q Consensus       299 ~~~~~-~~~~~~  309 (366)
                      ..+.. +..+|.
T Consensus       204 ~~~~~a~~~~K~  215 (263)
T PRK07799        204 ANGPLAVQAILR  215 (263)
T ss_pred             hcChHHHHHHHH
Confidence            87643 444443

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=2.1e-42  Score=329.46  Aligned_cols=208  Identities=20%  Similarity=0.351  Sum_probs=179.9

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC--CH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK--TA  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~--~~  137 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.| +.||+|+||+++....  ..
T Consensus        11 ~~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~~~~~~   88 (273)
T PRK07396         11 EYEDILYKSADGIAKITINRPE-VRNAFRPKTVKEMIDAFADARDDDNIGVII-LTGAGDKAFCSGGDQKVRGYGGYVDD   88 (273)
T ss_pred             CCcceEEEecCCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EEeCCCCceEeCcChhhhhcccccch
Confidence            3567888889999999999999 789999999999999999999999999755 57877 5999999999874321  11


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      .....+  ....++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++
T Consensus        89 ~~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~  142 (273)
T PRK07396         89 DGVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNA------------------------IFGQ  142 (273)
T ss_pred             hhhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCc------------------------EEec
Confidence            111111  23457778999999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++.+|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|
T Consensus       143 pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l  209 (273)
T PRK07396        143 TGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPL-------------ADLEKETVRWCREM  209 (273)
T ss_pred             ccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-------------HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997             78999999999999


Q ss_pred             hcCccc-ccccCC
Q psy9060         298 ASGKLK-INRIKP  309 (366)
Q Consensus       298 a~~~~~-~~~~~~  309 (366)
                      +..+.. +..+|.
T Consensus       210 a~~~~~a~~~~K~  222 (273)
T PRK07396        210 LQNSPMALRCLKA  222 (273)
T ss_pred             HhCCHHHHHHHHH
Confidence            987643 444443

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-42  Score=326.88  Aligned_cols=206  Identities=30%  Similarity=0.499  Sum_probs=181.9

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TADQVK  141 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~~~~  141 (366)
                      .+.++++++|++|+||||+ +.|++|.+|+++|.++++.+++|++||++| ++|.|+.||+|+||+++....  ......
T Consensus         4 ~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vV-l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~   81 (260)
T PRK07511          4 ELLSRREGSTLVLTLSNPG-ARNALHPDMYAAGIEALNTAERDPSIRAVV-LTGAGGFFCAGGNLNRLLENRAKPPSVQA   81 (260)
T ss_pred             eeEEEeECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHhccCCCeEEEE-EECCCCCcccCcCHHHHhhcccccchhHH
Confidence            4678889999999999998 789999999999999999999999999755 578899999999999875421  122333


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+...+++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||++
T Consensus        82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~~  137 (260)
T PRK07511         82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDA------------------------KFVMAYVK  137 (260)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCC------------------------EEeccccc
Confidence            445566788999999999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|++++|++++|..++++|+++|++++++||+++||||+|+|+             +++.+.+.+++++++..+
T Consensus       138 ~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a~~l~~~~  204 (260)
T PRK07511        138 VGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEP-------------GQALAEALALADQLAAGS  204 (260)
T ss_pred             cCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCc-------------hHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999987             578888999999998875


Q ss_pred             c-cccccC
Q psy9060         302 L-KINRIK  308 (366)
Q Consensus       302 ~-~~~~~~  308 (366)
                      . .+...|
T Consensus       205 ~~~~~~~K  212 (260)
T PRK07511        205 PNALARIK  212 (260)
T ss_pred             HHHHHHHH
Confidence            4 333344

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.8e-42  Score=326.09  Aligned_cols=200  Identities=33%  Similarity=0.553  Sum_probs=177.3

Q ss_pred             eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC-CCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISMLAACKTADQVKQISKSGQ  148 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  148 (366)
                      +++|++||||||+ +.|++|.+|+++|.++++.++.|+++++||| +|. +++||+|+|++++.... ......+...++
T Consensus         2 ~~~v~~itlnrp~-~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl-~g~~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~   78 (251)
T PLN02600          2 DSGIVELRLDRPE-AKNAIGKEMLRGLRSAFEKIQADASARVVML-RSSVPGVFCAGADLKERRKMS-PSEVQKFVNSLR   78 (251)
T ss_pred             CCcEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEEE-ecCCCCceeeCcCHHHHhccC-hHHHHHHHHHHH
Confidence            4789999999999 7899999999999999999999999997665 665 68999999999875432 233334555567


Q ss_pred             HHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060         149 QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA  228 (366)
Q Consensus       149 ~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~  228 (366)
                      .++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++|++|++
T Consensus        79 ~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~~~Gl~p~~  134 (251)
T PLN02600         79 STFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA------------------------VFGLPETGLAIIPGA  134 (251)
T ss_pred             HHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCC------------------------EEeCcccccCcCCCc
Confidence            78889999999999999999999999999999999999986                        999999999999999


Q ss_pred             hHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-cccc
Q psy9060         229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRI  307 (366)
Q Consensus       229 gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~~~~  307 (366)
                      |++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++|+..+.. +...
T Consensus       135 g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a~~la~~~p~a~~~~  201 (251)
T PLN02600        135 GGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPA-------------GEAYEKALELAQEINQKGPLAIKMA  201 (251)
T ss_pred             hHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeCh-------------hHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999999999999999999999987             67889999999999988654 4444


Q ss_pred             CC
Q psy9060         308 KP  309 (366)
Q Consensus       308 ~~  309 (366)
                      |.
T Consensus       202 K~  203 (251)
T PLN02600        202 KK  203 (251)
T ss_pred             HH
Confidence            43

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.2e-42  Score=319.82  Aligned_cols=192  Identities=26%  Similarity=0.477  Sum_probs=172.9

Q ss_pred             eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQ  149 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~  149 (366)
                      +++|++|+||||+ + |++|.+|+.+|.+++++++.|++++++| ++|.|+.||+|+|++++..... .......+.+++
T Consensus        15 ~~~i~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~~~~~~   90 (222)
T PRK05869         15 DAGLATLLLSRPP-T-NALTRQVYREIVAAANELGRRDDVAAVI-LYGGHEIFSAGDDMPELRTLSA-QEADTAARVRQQ   90 (222)
T ss_pred             cCCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcCcCcCHHHHhccCh-hhHHHHHHHHHH
Confidence            4899999999997 4 9999999999999999999999999755 5888999999999998764322 222233445678


Q ss_pred             HHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh
Q psy9060         150 ILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG  229 (366)
Q Consensus       150 ~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g  229 (366)
                      ++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++|++|++|
T Consensus        91 ~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~Gl~p~~g  146 (222)
T PRK05869         91 AVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNV------------------------KFGATEILAGLAPSGD  146 (222)
T ss_pred             HHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCC------------------------EEcCchhccCCCCCcc
Confidence            8999999999999999999999999999999999999876                        9999999999999999


Q ss_pred             HHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       230 g~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      ++.+|++++|..++++++++|+.++++||+++||||+++|+             +++.+.+.+++++|++.+.
T Consensus       147 ~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ia~~~~  206 (222)
T PRK05869        147 GMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAP-------------DDVYDAAAAWARRFLDGPP  206 (222)
T ss_pred             HHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCc-------------hHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999987             6788999999999988754

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-42  Score=329.25  Aligned_cols=208  Identities=24%  Similarity=0.373  Sum_probs=180.0

Q ss_pred             CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-----
Q psy9060          62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-----  135 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-----  135 (366)
                      ++.+.++. +++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++....     
T Consensus         8 ~~~v~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~vrvvV-l~g~g~~FcaG~Dl~~~~~~~~~~~~   85 (276)
T PRK05864          8 MSLVLVDHPRPEIALITLNRPE-RMNSMAFDVMVPLKEALAEVSYDNSVRVVV-LTGAGRGFSSGADHKSAGVVPHVEGL   85 (276)
T ss_pred             CCceEEeeecCCEEEEEecCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCeecCcchhhhhcccccccc
Confidence            45677876 7899999999998 789999999999999999999999999755 588899999999999874311     


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         136 -TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       136 -~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                       ...........+++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a------------------------~  141 (276)
T PRK05864         86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSA------------------------Y  141 (276)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCC------------------------E
Confidence             111111223445677888999999999999999999999999999999999986                        9


Q ss_pred             ccccchhccCCC-ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT  293 (366)
Q Consensus       215 ~~~pe~~~Gl~p-~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~  293 (366)
                      |++||+++|++| ++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.++
T Consensus       142 f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~  208 (276)
T PRK05864        142 FRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-------------EQLLDTCYAI  208 (276)
T ss_pred             ecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCH-------------HHHHHHHHHH
Confidence            999999999997 78899999999999999999999999999999999999999987             7889999999


Q ss_pred             HHHHhcCccc-ccccC
Q psy9060         294 ASQLASGKLK-INRIK  308 (366)
Q Consensus       294 a~~la~~~~~-~~~~~  308 (366)
                      +++|+..++. +..+|
T Consensus       209 a~~la~~~p~a~~~~K  224 (276)
T PRK05864        209 AARMAGFSRPGIELTK  224 (276)
T ss_pred             HHHHHhCCHHHHHHHH
Confidence            9999987643 43344

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-42  Score=328.54  Aligned_cols=208  Identities=24%  Similarity=0.441  Sum_probs=182.3

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---CCHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC---KTADQ  139 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~---~~~~~  139 (366)
                      +.+.++++++|++|+||||+ +.|+++.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++++...   .+...
T Consensus        17 ~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vV-ltg~g~~FsaG~Dl~~~~~~~~~~~~~~   94 (277)
T PRK08258         17 RHFLWEVDDGVATITLNRPE-RKNPLTFESYAELRDLFRELVYADDVKAVV-LTGAGGNFCSGGDVHEIIGPLTKMDMPE   94 (277)
T ss_pred             cceEEEEECCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EeCCCCCcccccCHHHHhccccccChhH
Confidence            47888999999999999998 789999999999999999999999999755 58889999999999987431   12222


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+.+..++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a------------------------~f~~pe  150 (277)
T PRK08258         95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSA------------------------KTAFLF  150 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCC------------------------EEeccc
Confidence            33344555678899999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCC-ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         220 VMLGLLP-GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       220 ~~~Gl~p-~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      +++|++| ++|++++|++++|..+|++|+++|++++++||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       151 ~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la  217 (277)
T PRK08258        151 TRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-------------EELLAEAQALARRLA  217 (277)
T ss_pred             cccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCH-------------HHHHHHHHHHHHHHH
Confidence            9999995 78899999999999999999999999999999999999999987             678999999999998


Q ss_pred             cCccc-ccccCC
Q psy9060         299 SGKLK-INRIKP  309 (366)
Q Consensus       299 ~~~~~-~~~~~~  309 (366)
                      ..+.. +..+|.
T Consensus       218 ~~~~~a~~~~K~  229 (277)
T PRK08258        218 AGPTFAHGMTKT  229 (277)
T ss_pred             hCCHHHHHHHHH
Confidence            87643 444443

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-42  Score=332.20  Aligned_cols=209  Identities=23%  Similarity=0.397  Sum_probs=181.2

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---C---
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC---K---  135 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~---~---  135 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.+..|+++++|| ++|.|+.||+|+|++++...   .   
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (296)
T PRK08260          3 YETIRYDVADGIATITLNRPD-KLNAFTVTMARELIEAFDAADADDAVRAVI-VTGAGRAFCAGADLSAGGNTFDLDAPR   80 (296)
T ss_pred             cceEEEeeeCCEEEEEeCCCc-ccCCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCCeecCcChHHhhhcccccccc
Confidence            456888889999999999998 789999999999999999999999999755 58889999999999987421   0   


Q ss_pred             ----------CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhh
Q psy9060         136 ----------TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYR  205 (366)
Q Consensus       136 ----------~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~  205 (366)
                                .......+....+.++..+..+||||||+|||+|+|||++|+++||+||+++++                
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a----------------  144 (296)
T PRK08260         81 TPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAA----------------  144 (296)
T ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCC----------------
Confidence                      000112233344567889999999999999999999999999999999999987                


Q ss_pred             hhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHH
Q psy9060         206 IVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEY  285 (366)
Q Consensus       206 ~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~  285 (366)
                              +|++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+             ++
T Consensus       145 --------~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-------------~~  203 (296)
T PRK08260        145 --------RFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP-------------DE  203 (296)
T ss_pred             --------EEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCH-------------HH
Confidence                    999999999999999999999999999999999999999999999999999999987             67


Q ss_pred             HHHHHHHHHHHHhcC-c-ccccccCC
Q psy9060         286 LEEVAVNTASQLASG-K-LKINRIKP  309 (366)
Q Consensus       286 l~~~a~~~a~~la~~-~-~~~~~~~~  309 (366)
                      +.+.+.+++++|+.. + ..+..+|.
T Consensus       204 l~~~a~~~a~~i~~~~~~~a~~~~K~  229 (296)
T PRK08260        204 LLPAARALAREIADNTSPVSVALTRQ  229 (296)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            889999999999874 3 34544553

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-42  Score=326.76  Aligned_cols=209  Identities=24%  Similarity=0.400  Sum_probs=182.6

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCC-CccEEEEEeeCCCcEEcCCCcchhhhcCCH--
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS-SIRSAVIISGKPGCFIAGADISMLAACKTA--  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~-~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~--  137 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+ ++++|| ++|.|+.||+|+|++++......  
T Consensus         2 ~~~~v~~~~~~~i~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvv-l~g~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T PRK05981          2 QFKKVTLDFDGGVAILTLDHPE-VMNAVSIDMLGGLAEALDAIEDGKAEVRCLV-LTGAGRGFCTGANLQGRGSGGRESD   79 (266)
T ss_pred             CcceEEEEeECCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCCcccccCHHhhhccccccc
Confidence            4567888999999999999998 789999999999999999999876 499655 58888999999999987542110  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         138 ---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       138 ---~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                         .....+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~  135 (266)
T PRK05981         80 SGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSA------------------------Y  135 (266)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCC------------------------E
Confidence               1122334456778899999999999999999999999999999999999987                        8


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      |++||+++|++|++|++++|++++|..++++|+++|+.++++||+++||||+++|+             +++.+.+.+++
T Consensus       136 f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a  202 (266)
T PRK05981        136 FLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDD-------------AELMAEAMKLA  202 (266)
T ss_pred             EechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-------------hHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987             67889999999


Q ss_pred             HHHhcCcc-cccccC
Q psy9060         295 SQLASGKL-KINRIK  308 (366)
Q Consensus       295 ~~la~~~~-~~~~~~  308 (366)
                      ++++..+. .+..+|
T Consensus       203 ~~l~~~~~~a~~~~K  217 (266)
T PRK05981        203 HELANGPTVALGLIR  217 (266)
T ss_pred             HHHHcCCHHHHHHHH
Confidence            99988765 344444

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-42  Score=325.08  Aligned_cols=206  Identities=28%  Similarity=0.423  Sum_probs=176.4

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.| +.||+|+||+++........
T Consensus         2 ~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~~F~aG~Dl~~~~~~~~~~~   79 (259)
T PRK06494          2 ALPFSTVERKGHVTIVTLNRPE-VMNALHLDAHFELEEVFDDFAADPEQWVAI-VTGAGDKAFSAGNDLKEQAAGGKRGW   79 (259)
T ss_pred             CCceeEEEeECCEEEEEEcCcc-ccCCCCHHHHHHHHHHHHHHhhCCCcEEEE-EEcCCCCceeccccHHhHhhcCcchh
Confidence            3456888889999999999998 789999999999999999999999999755 57777 69999999998754221111


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      .   ...+..+ ..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        80 ~---~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe  131 (259)
T PRK06494         80 P---ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENA------------------------TFALPE  131 (259)
T ss_pred             h---hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCC------------------------EEeCcc
Confidence            1   1122233 34468999999999999999999999999999999887                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+++|+             +++++.+.+++++++.
T Consensus       132 ~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~  198 (259)
T PRK06494        132 PRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPA-------------GELLAAAERWADDILA  198 (259)
T ss_pred             cccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-------------hHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             6789999999999998


Q ss_pred             Cccc-ccccCC
Q psy9060         300 GKLK-INRIKP  309 (366)
Q Consensus       300 ~~~~-~~~~~~  309 (366)
                      .+.. +..+|.
T Consensus       199 ~~~~a~~~~K~  209 (259)
T PRK06494        199 CSPLSIRASKQ  209 (259)
T ss_pred             cCHHHHHHHHH
Confidence            7643 444443

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=3.4e-42  Score=325.99  Aligned_cols=207  Identities=24%  Similarity=0.393  Sum_probs=180.3

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC--CCcEEcCCCcchhhhcCCHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK--PGCFIAGADISMLAACKTAD  138 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~--g~~F~aG~Dl~~~~~~~~~~  138 (366)
                      +++.+.++.+++|++||||||+ +.|++|.+|+++|.++++.++.|+ ++++|| +|.  +++||+|+||+++...... 
T Consensus         2 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~-v~~vvl-tg~~~~~~FcaG~Dl~~~~~~~~~-   77 (261)
T PRK11423          2 SMQYVNVVTINKIATITFNNPA-KRNALSKVLIDDLMQALSDLNRPE-IRVVIL-RAPSGSKVWSAGHDIHELPSGGRD-   77 (261)
T ss_pred             CccceEEEeECCEEEEEEcCcc-ccCCCCHHHHHHHHHHHHHHhcCC-ceEEEE-ECCCCCCeeECCcCHHHHhhcccc-
Confidence            3567888999999999999998 789999999999999999999887 997665 653  4799999999987532211 


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                       ...+...+..++..+..+||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~p  132 (261)
T PRK11423         78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS------------------------TFAMT  132 (261)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCC------------------------EecCc
Confidence             12233455678899999999999999999999999999999999999876                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|+++++++++|..++++|+++|++++|+||+++||||+|+|+             +++++.+.+++++++
T Consensus       133 e~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l~  199 (261)
T PRK11423        133 PANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEV-------------EELEDFTLQMAHHIS  199 (261)
T ss_pred             hhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             679999999999998


Q ss_pred             cCcc-cccccCC
Q psy9060         299 SGKL-KINRIKP  309 (366)
Q Consensus       299 ~~~~-~~~~~~~  309 (366)
                      ..+. .+..+|.
T Consensus       200 ~~~~~a~~~~K~  211 (261)
T PRK11423        200 EKAPLAIAVIKE  211 (261)
T ss_pred             hcCHHHHHHHHH
Confidence            8754 3444443

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-42  Score=325.73  Aligned_cols=205  Identities=26%  Similarity=0.415  Sum_probs=181.6

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +++.++.+++|++|+||||+ +.|++|.+|+.+|.++++.+ .|+++++ ||++|.|+.||+|+|++++...........
T Consensus         6 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~-~d~~vrv-vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (260)
T PRK07659          6 ESVVVKYEGRVATIMLNRPE-ALNALDEPMLKELLQALKEV-AESSAHI-VVLRGNGRGFSAGGDIKMMLSSNDESKFDG   82 (260)
T ss_pred             ceEEEEeeCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHh-cCCCeeE-EEEECCCCCcccccCHHHHhhccCchhHHH
Confidence            46888999999999999998 78999999999999999999 5889996 456889999999999998864322233344


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +...+++++..+..+||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        83 ~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~  138 (260)
T PRK07659         83 VMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISA------------------------KLAMNFIGI  138 (260)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCC------------------------EEcCchhhc
Confidence            55667788899999999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..+|++|+++|+.++|+||+++||||+++ +             +++.+.+.+++++++..+.
T Consensus       139 Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-------------~~~~~~a~~~a~~l~~~~~  204 (260)
T PRK07659        139 GLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-G-------------GDFQTAAKQKISEWLQKPL  204 (260)
T ss_pred             CCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-h-------------hHHHHHHHHHHHHHHhCCH
Confidence            9999999999999999999999999999999999999999999999 6             5688899999999988765


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +..+|
T Consensus       205 ~a~~~~K  211 (260)
T PRK07659        205 KAMIETK  211 (260)
T ss_pred             HHHHHHH
Confidence            3 34444

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.6e-42  Score=327.48  Aligned_cols=207  Identities=20%  Similarity=0.295  Sum_probs=178.8

Q ss_pred             CcceeEEEe-CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC--HH
Q psy9060          62 TKHFKEKAV-GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT--AD  138 (366)
Q Consensus        62 ~~~i~~~~~-~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~--~~  138 (366)
                      ++++.++++ ++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|+.||+|+|++++.....  ..
T Consensus         4 ~~~l~~~~~~~~v~~itlnrp~-~~Nal~~~~~~el~~al~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~   81 (265)
T PRK05674          4 FQTIELIRDPRGFATLWLSRAD-KNNAFNAQMIRELILALDQVQSDASLRFLL-LRGRGRHFSAGADLAWMQQSADLDYN   81 (265)
T ss_pred             cceEEEEEcCCCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCCcccCcCHHHHhhcccccch
Confidence            667888885 789999999999 789999999999999999999999999755 5899999999999998753211  01


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ........+.+++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a------------------------~f~~p  137 (265)
T PRK05674         82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDA------------------------QFCLS  137 (265)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCC------------------------EEeCc
Confidence            111122345678889999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++ ++++++|..++++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++++
T Consensus       138 e~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la  203 (265)
T PRK05674        138 EVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPA-------------AELEAQVEAWIANLL  203 (265)
T ss_pred             ccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence            9999999987665 58999999999999999999999999999999999987             679999999999999


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      ..++. +..+|
T Consensus       204 ~~~p~a~~~~K  214 (265)
T PRK05674        204 LNSPQALRASK  214 (265)
T ss_pred             hcCHHHHHHHH
Confidence            87653 44444

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-42  Score=323.19  Aligned_cols=202  Identities=29%  Similarity=0.530  Sum_probs=174.0

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++|| ++|.|+.||+|+|++++........   
T Consensus         3 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~~---   77 (254)
T PRK08252          3 DEVLVERRGRVLIITINRPE-ARNAVNAAVAQGLAAALDELDADPDLSVGI-LTGAGGTFCAGMDLKAFARGERPSI---   77 (254)
T ss_pred             ceEEEEEECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCceEcCcCHHHHhcccchhh---
Confidence            35788889999999999998 789999999999999999999999999755 5888999999999998864221111   


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      ....+..++  ...+||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        78 ~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~  131 (254)
T PRK08252         78 PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDA------------------------KFGLPEVKR  131 (254)
T ss_pred             hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCC------------------------EEeCchhhc
Confidence            111122222  147999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..+|++|+++|++++++||+++||||+|+|+             +++.+.+.+++++++..++
T Consensus       132 Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l~~~~~  198 (254)
T PRK08252        132 GLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEP-------------GQALDAALELAERIAANGP  198 (254)
T ss_pred             CCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCc-------------chHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999987             6788899999999998765


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +..+|
T Consensus       199 ~a~~~~K  205 (254)
T PRK08252        199 LAVAASK  205 (254)
T ss_pred             HHHHHHH
Confidence            3 33344

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=1.6e-42  Score=324.85  Aligned_cols=203  Identities=37%  Similarity=0.661  Sum_probs=185.9

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060          66 KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK  145 (366)
Q Consensus        66 ~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  145 (366)
                      +|+.+++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.++.||+|.|++++... +......+.+
T Consensus         1 ~~~~~~~v~~i~ln~p~-~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~   77 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPE-KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-DEEEAREFFR   77 (245)
T ss_dssp             EEEEETTEEEEEEECGG-GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-HHHHHHHHHH
T ss_pred             CEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-ccccccccch
Confidence            47889999999999998 799999999999999999999999999 56678999999999999998875 4456677788


Q ss_pred             HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCC
Q psy9060         146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL  225 (366)
Q Consensus       146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~  225 (366)
                      .++.++..+.++||||||+|||+|+|||++++++||+||+++++                        +|++||+++|++
T Consensus        78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~~~G~~  133 (245)
T PF00378_consen   78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDA------------------------KFGFPEVRLGIF  133 (245)
T ss_dssp             HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTT------------------------EEETGGGGGTSS
T ss_pred             hhccccccchhhhhheeecccccccccccccccccceEEeeccc------------------------ceeeeecccCcc
Confidence            89999999999999999999999999999999999999999987                        899999999999


Q ss_pred             CChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-c
Q psy9060         226 PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-I  304 (366)
Q Consensus       226 p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~  304 (366)
                      |++|++.+|+|++|..++++++++|++++|+||+++||||+|+|+             +++.+.+.+++++++..+.. +
T Consensus       134 p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~a~~~a~~l~~~~~~a~  200 (245)
T PF00378_consen  134 PGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPD-------------EELDEEALELAKRLAAKPPSAL  200 (245)
T ss_dssp             STSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESG-------------GGHHHHHHHHHHHHHTSCHHHH
T ss_pred             cccccccccceeeecccccccccccccchhHHHHhhcceeEEcCc-------------hhhhHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999999999999999999997             56999999999999988543 3


Q ss_pred             cccC
Q psy9060         305 NRIK  308 (366)
Q Consensus       305 ~~~~  308 (366)
                      ...|
T Consensus       201 ~~~K  204 (245)
T PF00378_consen  201 RATK  204 (245)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3344

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-42  Score=327.59  Aligned_cols=209  Identities=29%  Similarity=0.449  Sum_probs=180.2

Q ss_pred             CCcceeEEEeC-CEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVG-DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~-~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      .++.+.+++++ +|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++........
T Consensus         3 ~~~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06210          3 AYDAVLYEVADSGVAVITLNRPD-RLNAWTPVMEAEVYAAMDRAEADPAVRVIV-LTGAGRGFCAGADMGELQTIDPSDG   80 (272)
T ss_pred             CcceEEEEECCCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHhccCCCeeEEE-EECCCCCcccccCHHHHhccCcccc
Confidence            45678889888 99999999998 789999999999999999999999999755 5788999999999998754211100


Q ss_pred             -----HHHH----HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccc
Q psy9060         140 -----VKQI----SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKD  210 (366)
Q Consensus       140 -----~~~~----~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~  210 (366)
                           ...+    ...+++++..+.++||||||+|||+|+|||++|+++||+||+++++                     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a---------------------  139 (272)
T PRK06210         81 RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGA---------------------  139 (272)
T ss_pred             cccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCC---------------------
Confidence                 0011    1123556788999999999999999999999999999999999987                     


Q ss_pred             ccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHH
Q psy9060         211 KKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA  290 (366)
Q Consensus       211 ~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a  290 (366)
                         +|++||+++|++|++|++++|++++|..++++|+++|+.++|+||+++||||+|+|+             +++.+.+
T Consensus       140 ---~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a  203 (272)
T PRK06210        140 ---KFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPP-------------DELMERT  203 (272)
T ss_pred             ---EEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-------------HHHHHHH
Confidence               999999999999999999999999999999999999999999999999999999987             6788999


Q ss_pred             HHHHHHHhcC--cccccccC
Q psy9060         291 VNTASQLASG--KLKINRIK  308 (366)
Q Consensus       291 ~~~a~~la~~--~~~~~~~~  308 (366)
                      .+++++++..  |..+...|
T Consensus       204 ~~~a~~i~~~~~p~a~~~~K  223 (272)
T PRK06210        204 LAYAEDLARNVSPASMAVIK  223 (272)
T ss_pred             HHHHHHHHhcCCHHHHHHHH
Confidence            9999999863  44454455

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.4e-42  Score=323.39  Aligned_cols=204  Identities=27%  Similarity=0.424  Sum_probs=174.7

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|++||+|+|++++..... .....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-ltg~g~~FcaG~Dl~~~~~~~~-~~~~~   79 (254)
T PRK08259          3 MSVRVERNGPVTTVILNRPE-VRNAVDGPTAAALADAFRAFDADDAASVAV-LWGAGGTFCAGADLKAVGTGRG-NRLHP   79 (254)
T ss_pred             ceEEEEEECCEEEEEecCCc-cccCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCccCCcChHHHhcccc-hhhhh
Confidence            34788889999999999998 789999999999999999999999999755 5888999999999998754221 11111


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                        .....+...+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        80 --~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~  133 (254)
T PRK08259         80 --SGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDA------------------------VFGVFCRRW  133 (254)
T ss_pred             --hhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCC------------------------EecCccccc
Confidence              001112223347999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++|++.+.
T Consensus       134 Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~  200 (254)
T PRK08259        134 GVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPK-------------GQARAAAEELAAELAAFPQ  200 (254)
T ss_pred             CCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeCh-------------hHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999997             6789999999999998865


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +..+|
T Consensus       201 ~a~~~~K  207 (254)
T PRK08259        201 TCLRADR  207 (254)
T ss_pred             HHHHHHH
Confidence            4 33344

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-41  Score=322.91  Aligned_cols=207  Identities=23%  Similarity=0.412  Sum_probs=177.1

Q ss_pred             CcceeEEEe-CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHH
Q psy9060          62 TKHFKEKAV-GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TAD  138 (366)
Q Consensus        62 ~~~i~~~~~-~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~  138 (366)
                      ++.+.++++ ++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+||+++....  ...
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~~   80 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPE-KHNALSARMIAELTTAARRLAADAAVRVVV-LTGAGKSFCAGGDLGWMRAQMTADRA   80 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcc-cccCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCcccCCcCHHHHHhhcccchh
Confidence            445778875 689999999998 799999999999999999999999999755 588899999999999875311  111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ........+..++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a------------------------~f~~p  136 (262)
T PRK07468         81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGA------------------------RFGLT  136 (262)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCC------------------------EEeCc
Confidence            111223445678889999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|+++++ +++|..++++|+++|++++++||+++||||+|+|+             +++.+.+.+++++++
T Consensus       137 e~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~~~~~a~~l~  202 (262)
T PRK07468        137 ETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPA-------------ERLDAAVEAEVTPYL  202 (262)
T ss_pred             hhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999998855 45999999999999999999999999999999987             678889999999998


Q ss_pred             cCcc-cccccC
Q psy9060         299 SGKL-KINRIK  308 (366)
Q Consensus       299 ~~~~-~~~~~~  308 (366)
                      ..+. .+..+|
T Consensus       203 ~~~~~a~~~~K  213 (262)
T PRK07468        203 SCAPGAVAAAK  213 (262)
T ss_pred             hcCHHHHHHHH
Confidence            8754 344444

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-42  Score=323.43  Aligned_cols=205  Identities=23%  Similarity=0.318  Sum_probs=178.7

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++++++| ++|.|+.||+|+|++++....... ...
T Consensus         3 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~-~~~   79 (249)
T PRK05870          3 DPVLLDVDDGVALITVNDPD-RRNAVTAEMSAQLRAAVAAAEADPDVHALV-VTGAGKAFCAGADLTALGAAPGRP-AED   79 (249)
T ss_pred             ccEEEEccCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCCeecCcChHHHhcccccc-hHH
Confidence            34778888999999999998 789999999999999999999999999755 588999999999999986532211 122


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      ......+.+..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        80 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe~~~  135 (249)
T PRK05870         80 GLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKA------------------------LFDARFQKL  135 (249)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCC------------------------EEeCccccc
Confidence            33445567788999999999999999999999999999999999987                        899999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..++++|+++|+.++++||+++||||+++ +              ++.+.+.+++++++..++
T Consensus       136 G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~--------------~l~~~a~~~a~~la~~~~  200 (249)
T PRK05870        136 GLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA-D--------------DPVAAALELAAGPAAAPR  200 (249)
T ss_pred             CcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH-h--------------hHHHHHHHHHHHHHhCCH
Confidence            9999999999999999999999999999999999999999999999 4              477889999999998864


Q ss_pred             c-ccccCC
Q psy9060         303 K-INRIKP  309 (366)
Q Consensus       303 ~-~~~~~~  309 (366)
                      . +..+|.
T Consensus       201 ~a~~~~K~  208 (249)
T PRK05870        201 ELVLATKA  208 (249)
T ss_pred             HHHHHHHH
Confidence            3 444453

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=8.1e-42  Score=324.05  Aligned_cols=206  Identities=23%  Similarity=0.420  Sum_probs=178.8

Q ss_pred             CCcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      +.+.+.++. +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++...... .
T Consensus         7 ~~~~i~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~-~   83 (265)
T PLN02888          7 SENLILVPKSRNGIATITINRPK-ALNALTRPMMVELAAAFKRLDEDDSVKVII-LTGSGRAFCSGVDLTAAEEVFKG-D   83 (265)
T ss_pred             CCCeEEEEeccCCEEEEEEcCCC-cccCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCcccCCCCHHHHHhhccc-h
Confidence            345677775 6899999999998 789999999999999999999999999755 57888999999999987532111 1


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      .   .....+++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        84 ~---~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~pe  136 (265)
T PLN02888         84 V---KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGA------------------------KFIDTH  136 (265)
T ss_pred             h---hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCC------------------------EecCcc
Confidence            1   1123456778899999999999999999999999999999999987                        899999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|+.++++||+++||||+|||+             +++.+.+.+++++++.
T Consensus       137 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~  203 (265)
T PLN02888        137 AKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEE-------------SELLKKAREVAEAIIK  203 (265)
T ss_pred             ccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeCh-------------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             6788999999999998


Q ss_pred             Ccc-cccccCC
Q psy9060         300 GKL-KINRIKP  309 (366)
Q Consensus       300 ~~~-~~~~~~~  309 (366)
                      .+. .+..+|.
T Consensus       204 ~~~~a~~~~K~  214 (265)
T PLN02888        204 NNQGMVLRYKS  214 (265)
T ss_pred             CCHHHHHHHHH
Confidence            754 3444553

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2e-41  Score=318.65  Aligned_cols=205  Identities=21%  Similarity=0.311  Sum_probs=181.1

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .++.+.++++++|++|+||||+ +.|++|.+++++|.++++++..|+++|++| ++|.|+.||+|+|++++.......  
T Consensus         3 ~~~~~~~~~~~~v~~i~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~--   78 (249)
T PRK07110          3 MKVVELREVEEGIAQVTMQDRV-NKNAFSDELCDQLHEAFDTIAQDPRYKVVI-LTGYPNYFATGGTQEGLLSLQTGK--   78 (249)
T ss_pred             CCceEEEEeeCCEEEEEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCeeCCcChHHHhhccchh--
Confidence            3556788889999999999998 789999999999999999999999999755 588999999999999875432211  


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+. . ++++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        79 ~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~  132 (249)
T PRK07110         79 GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRES------------------------VYTANFM  132 (249)
T ss_pred             hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCC------------------------EecCchh
Confidence            1121 1 578889999999999999999999999999999999999987                        8999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|++++++||+++||||+|+++             +++.+.+.++++++++.
T Consensus       133 ~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~  199 (249)
T PRK07110        133 KYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPR-------------AEVLEKALELARSLAEK  199 (249)
T ss_pred             ccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh-------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             67899999999999987


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +...|
T Consensus       200 ~~~a~~~~K  208 (249)
T PRK07110        200 PRHSLVLLK  208 (249)
T ss_pred             CHHHHHHHH
Confidence            653 44444

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=1.9e-41  Score=320.85  Aligned_cols=203  Identities=31%  Similarity=0.519  Sum_probs=176.5

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      .+.++++++|++|+||||+  .|++|.+|+++|.++++.++.|++|++|| ++|.| +.||+|+|++++........  .
T Consensus         4 ~i~~~~~~~v~~itlnrp~--~Nal~~~~~~~l~~~l~~~~~d~~vr~vv-l~g~g~~~F~aG~Dl~~~~~~~~~~~--~   78 (261)
T PRK03580          4 SLHTTRNGSILEITLDRPK--ANAIDAKTSFAMGEVFLNFRDDPELRVAI-ITGAGEKFFSAGWDLKAAAEGEAPDA--D   78 (261)
T ss_pred             eEEEEEECCEEEEEECCcc--ccCCCHHHHHHHHHHHHHHHhCCCcEEEE-EEeCCCCceecccCHHHHhccCcchh--h
Confidence            4788889999999999996  49999999999999999999999999755 47776 69999999998754322111  1


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +.......+.++..+||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        79 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~  134 (261)
T PRK03580         79 FGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNA------------------------SFALPEAKL  134 (261)
T ss_pred             hhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCC------------------------EEeCccccc
Confidence            11223456778999999999999999999999999999999999877                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..++++++++|+.++++||+++||||+|+|+             +++.+.+.+++++|+..+.
T Consensus       135 G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~  201 (261)
T PRK03580        135 GIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-------------AELMDRARELAQQLVNSAP  201 (261)
T ss_pred             CcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCH-------------hHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999997             6789999999999998765


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +..+|
T Consensus       202 ~a~~~~K  208 (261)
T PRK03580        202 LAIAALK  208 (261)
T ss_pred             HHHHHHH
Confidence            3 44444

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-41  Score=318.87  Aligned_cols=205  Identities=28%  Similarity=0.455  Sum_probs=177.9

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-CCHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-KTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~~~~~  139 (366)
                      .++.+.++++++|++||||||+  .|++|.+|+.+|.++++.+++|+++++|| ++|.|+.||+|+|++++... .....
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~--~Nal~~~~~~~l~~al~~~~~d~~vr~vV-l~g~g~~FcaG~Dl~~~~~~~~~~~~   78 (257)
T PRK06495          2 MMSQLKLEVSDHVAVVTLDNPP--VNALSRELRDELIAVFDEISERPDVRVVV-LTGAGKVFCAGADLKGRPDVIKGPGD   78 (257)
T ss_pred             CcceEEEEeeCCEEEEEECCCc--cccCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCCcccCcCHHhHhhccCCchh
Confidence            3567888899999999999997  49999999999999999999999999755 57889999999999987542 12222


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+....++++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe  134 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENA------------------------VFGLPE  134 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCC------------------------EeeChh
Confidence            23334456778889999999999999999999999999999999999876                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|+.   |++.++++++|..+|++|+++|+.++|+||+++||||+++|+             +++.+.+.+++++++.
T Consensus       135 ~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-------------~~~~~~a~~~a~~l~~  198 (257)
T PRK06495        135 IDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPP-------------EELMPEAMEIAREIAS  198 (257)
T ss_pred             hccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHHh
Confidence            999996   456789999999999999999999999999999999999987             6789999999999998


Q ss_pred             Cccc-ccccC
Q psy9060         300 GKLK-INRIK  308 (366)
Q Consensus       300 ~~~~-~~~~~  308 (366)
                      .++. +..+|
T Consensus       199 ~~~~a~~~~K  208 (257)
T PRK06495        199 KSPLATRLAK  208 (257)
T ss_pred             CCHHHHHHHH
Confidence            7643 44444

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=5.6e-41  Score=320.34  Aligned_cols=208  Identities=25%  Similarity=0.380  Sum_probs=178.7

Q ss_pred             CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC--CcEEcCCCcchhhhc-CCH
Q psy9060          62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP--GCFIAGADISMLAAC-KTA  137 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g--~~F~aG~Dl~~~~~~-~~~  137 (366)
                      .+.+.+++ +++|++||||||+  .|++|.+|+++|.++++++++|+++++||| +|.|  ++||+|.||+++... .+.
T Consensus        10 ~~~i~~~~~~~~Va~itlnr~~--~Nal~~~~~~eL~~al~~~~~d~~vr~vVl-tg~g~~~~FcaG~Dl~~~~~~~~~~   86 (278)
T PLN03214         10 TPGVRVDRRPGGIAVVWLAKEP--VNSMTLAMWRSLDDALTALENDPTVRGVVF-ASGLRRDVFTAGNDIAELYAPKTSA   86 (278)
T ss_pred             CCceEEEEcCCCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHcCCCceEEEE-eCCCCCCcccCccCHHHHhccccch
Confidence            45788888 6899999999985  699999999999999999999999997655 6765  699999999987532 111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      .....+......++.++.++||||||+|||+|+|||++|+++|||||+++++                        +|++
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a------------------------~f~~  142 (278)
T PLN03214         87 ARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEG------------------------TMGL  142 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCC------------------------EecC
Confidence            2222333334567888999999999999999999999999999999999876                        9999


Q ss_pred             cchhccC-CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGL-LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       218 pe~~~Gl-~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      ||+++|+ +|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++
T Consensus       143 pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~  209 (278)
T PLN03214        143 NEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-------------AALMEAAASAMER  209 (278)
T ss_pred             cHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh-------------HHHHHHHHHHHHH
Confidence            9999999 5999999999999999999999999999999999999999999987             6788999999999


Q ss_pred             HhcCccc-ccccCC
Q psy9060         297 LASGKLK-INRIKP  309 (366)
Q Consensus       297 la~~~~~-~~~~~~  309 (366)
                      |+..+.. +..+|.
T Consensus       210 l~~~~~~a~~~~K~  223 (278)
T PLN03214        210 ALKLPSAARAATKA  223 (278)
T ss_pred             HHcCCHHHHHHHHH
Confidence            9887643 444443

>PLN02921 naphthoate synthase

Probab=100.00  E-value=4.5e-41  Score=327.08  Aligned_cols=208  Identities=21%  Similarity=0.357  Sum_probs=179.6

Q ss_pred             CCcceeEEE--eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC--
Q psy9060          61 STKHFKEKA--VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK--  135 (366)
Q Consensus        61 ~~~~i~~~~--~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~--  135 (366)
                      .++.+.+++  +++|++|+||||+ +.|+||.+|+.+|.++++.++.|+++++|| ++|.| ++||+|+|++++....  
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~-~~Nal~~~~~~eL~~al~~~~~d~~vrvVV-Ltg~G~k~FcaG~Dl~~~~~~~~~  140 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPE-RRNAFRPRTVKELQRAFNDARDDSSVGVII-LTGKGTKAFCSGGDQAVRGKDGYV  140 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEE-EecCCCCceecCcChhhhhccccc
Confidence            466788887  4899999999999 789999999999999999999999999655 57877 7999999999875321  


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         136 TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                      .......+  ...+++..|.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus       141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A------------------------~f  194 (327)
T PLN02921        141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNA------------------------VF  194 (327)
T ss_pred             chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCC------------------------EE
Confidence            11111111  12456788999999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++++.+.++++
T Consensus       195 ~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-------------~~l~~~a~~~a~  261 (327)
T PLN02921        195 GQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPL-------------DELEGETVKWCR  261 (327)
T ss_pred             eCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-------------HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987             789999999999


Q ss_pred             HHhcCccc-ccccCC
Q psy9060         296 QLASGKLK-INRIKP  309 (366)
Q Consensus       296 ~la~~~~~-~~~~~~  309 (366)
                      +|+..+.. +..+|.
T Consensus       262 ~la~~~p~al~~~K~  276 (327)
T PLN02921        262 EILRNSPTAIRVLKS  276 (327)
T ss_pred             HHHccCHHHHHHHHH
Confidence            99987643 444453

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-41  Score=319.36  Aligned_cols=207  Identities=27%  Similarity=0.458  Sum_probs=177.3

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH--HH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA--DQ  139 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~--~~  139 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+|++++......  ..
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vv-l~g~g~~F~aG~Dl~~~~~~~~~~~~~   79 (262)
T PRK07509          2 MDRVSVTIEDGIADVRLNRPD-KMNALDFAMFEELIATIKRLKKDRGIRAVI-LSGEGGAFCAGLDVKSVASSPGNAVKL   79 (262)
T ss_pred             CceEEEEeeCCEEEEEecCcc-cccCCCHHHHHHHHHHHHHHhhCCCCeEEE-EECCCCCcCCCcCHHHHhcccchhhhh
Confidence            456888999999999999998 799999999999999999999999999755 58999999999999987642211  11


Q ss_pred             HHH----HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         140 VKQ----ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       140 ~~~----~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                      ...    ....+..++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a------------------------~f  135 (262)
T PRK07509         80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDT------------------------KL  135 (262)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCC------------------------Ee
Confidence            111    11234556778889999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|++|++|++++|++++|..++++|+++|++++|+||+++||||+++++               +.+.+.++++
T Consensus       136 ~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---------------~~~~a~~~a~  200 (262)
T PRK07509        136 SIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSDD---------------PLAAALALAR  200 (262)
T ss_pred             ecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhch---------------HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999963               4678889999


Q ss_pred             HHhcCccc-ccccCC
Q psy9060         296 QLASGKLK-INRIKP  309 (366)
Q Consensus       296 ~la~~~~~-~~~~~~  309 (366)
                      +++..+.. +..+|.
T Consensus       201 ~l~~~~~~~~~~~K~  215 (262)
T PRK07509        201 EIAQRSPDAIAAAKR  215 (262)
T ss_pred             HHHhCCHHHHHHHHH
Confidence            99887543 444443

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-41  Score=316.50  Aligned_cols=198  Identities=26%  Similarity=0.381  Sum_probs=171.6

Q ss_pred             EeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060          69 AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQ  148 (366)
Q Consensus        69 ~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  148 (366)
                      ++++|++|+||||+ + |++|.+|+.+|.++++.++.|++||+|| ++|.|+.||+|+|++++.............+...
T Consensus         8 ~~~~v~~itlnrp~-~-Nal~~~~~~~l~~~l~~~~~d~~vr~vV-ltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   84 (249)
T PRK07938          8 PEPGIAEVTVDYPP-V-NALPSAGWFALADAITAAGADPDTRVVV-LRAEGRGFNAGVDIKELQATPGFTALIDANRGCF   84 (249)
T ss_pred             cCCCEEEEEECCCC-c-ccCCHHHHHHHHHHHHHhhcCCCeEEEE-EECCCCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence            46899999999997 4 9999999999999999999999999755 5889999999999998764322222222334456


Q ss_pred             HHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060         149 QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA  228 (366)
Q Consensus       149 ~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~  228 (366)
                      +++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+++|++   
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a------------------------~f~~pe~~~G~~---  137 (249)
T PRK07938         85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDA------------------------TFGLPEVDRGAL---  137 (249)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCC------------------------EeeCccceecCc---
Confidence            78889999999999999999999999999999999999887                        999999999986   


Q ss_pred             hHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-cccc
Q psy9060         229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRI  307 (366)
Q Consensus       229 gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~~~~  307 (366)
                      |++.+|++++|..++++|+++|+.++++||+++||||+|||+             +++++.+.+++++|+..+.. +..+
T Consensus       138 g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~a~~~~  204 (249)
T PRK07938        138 GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPR-------------DQLDEAALEVARKIAAKDTRVIRAA  204 (249)
T ss_pred             hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCH-------------HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            456789999999999999999999999999999999999987             78999999999999987643 4444


Q ss_pred             CC
Q psy9060         308 KP  309 (366)
Q Consensus       308 ~~  309 (366)
                      |.
T Consensus       205 K~  206 (249)
T PRK07938        205 KE  206 (249)
T ss_pred             HH
Confidence            43

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.5e-40  Score=317.92  Aligned_cols=203  Identities=23%  Similarity=0.357  Sum_probs=170.6

Q ss_pred             ccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhc-----CCCccEEEEEeeC-CCcEEcCCCcchhh
Q psy9060          59 KNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQS-----DSSIRSAVIISGK-PGCFIAGADISMLA  132 (366)
Q Consensus        59 k~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~-----d~~v~~vVl~~g~-g~~F~aG~Dl~~~~  132 (366)
                      +...-.+.++.+++|++|+|| |+ +.|++|.+|+++|.++++++++     |++|++||+ +|. |+.||+|+||+++.
T Consensus        13 ~~~~~~i~~e~~~~ia~itl~-p~-~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVl-tg~~gk~FcaG~Dl~~~~   89 (287)
T PRK08788         13 ELSQLRVYYEEERNVMWMYMR-AQ-PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVL-ASDVPGVFNLGGDLALFA   89 (287)
T ss_pred             ccCceEEEEEccCCEEEEEEC-CC-CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEE-EcCCCCceEeCcCHHHHh
Confidence            444456677778999999996 87 7899999999999999999998     899997665 676 78999999999875


Q ss_pred             hc---CCHHHHHHHHHHHHHHHHHHH---cCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhh
Q psy9060         133 AC---KTADQVKQISKSGQQILSEIE---SSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRI  206 (366)
Q Consensus       133 ~~---~~~~~~~~~~~~~~~~~~~i~---~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~  206 (366)
                      ..   ................+.++.   .+||||||+|||+|+|||++|+++||+||+++++                 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a-----------------  152 (287)
T PRK08788         90 ELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGA-----------------  152 (287)
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCC-----------------
Confidence            32   111111112222233334443   7999999999999999999999999999999887                 


Q ss_pred             hcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHH
Q psy9060         207 VVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL  286 (366)
Q Consensus       207 ~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l  286 (366)
                             +|++||+++|++|++|++++|++++|..++++|+++|+.++++||+++||||+++|+             +++
T Consensus       153 -------~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-------------~el  212 (287)
T PRK08788        153 -------KMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVED-------------GQG  212 (287)
T ss_pred             -------EeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-------------hHH
Confidence                   999999999999999999999999999999999999999999999999999999987             678


Q ss_pred             HHHHHHHHHHHhcCc
Q psy9060         287 EEVAVNTASQLASGK  301 (366)
Q Consensus       287 ~~~a~~~a~~la~~~  301 (366)
                      .+.+.+++++|+..+
T Consensus       213 ~~~a~~~a~~ia~~~  227 (287)
T PRK08788        213 EAAVRTFIRKSKRKL  227 (287)
T ss_pred             HHHHHHHHHHHhcCc
Confidence            888999999998653

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-40  Score=319.71  Aligned_cols=208  Identities=24%  Similarity=0.396  Sum_probs=176.9

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC----
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT----  136 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~----  136 (366)
                      +++.+.++.+++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|++||+|+||+++.....    
T Consensus         2 ~~~~v~~~~~~~Va~ItlnrP~-~~Nal~~~~~~eL~~~l~~~~~d~~vrvvV-ltg~G~~FcaG~Dl~~~~~~~~~~~~   79 (288)
T PRK08290          2 EYEYVRYEVAGRIARITLNRPE-ARNAQNRQMLYELDAAFRRAEADDAVRVIV-LAGAGKHFSAGHDLGSGTPGRDRDPG   79 (288)
T ss_pred             CCceEEEEeeCCEEEEEecCcc-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCccccCCCccccccccccccc
Confidence            4566888999999999999998 789999999999999999999999999755 5889999999999998732110    


Q ss_pred             --------------H---HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhh
Q psy9060         137 --------------A---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVA  199 (366)
Q Consensus       137 --------------~---~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~  199 (366)
                                    .   .........+.+++..+.++||||||+|||+|+|||++|+++||+||+++++          
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a----------  149 (288)
T PRK08290         80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDA----------  149 (288)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCC----------
Confidence                          0   0111112334567788999999999999999999999999999999999987          


Q ss_pred             hhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcc
Q psy9060         200 LACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPE  279 (366)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~  279 (366)
                                    +|++||+++|+ |+ .+++++++++|..++++|++||+.++|+||+++||||++||+         
T Consensus       150 --------------~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~---------  204 (288)
T PRK08290        150 --------------FFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPR---------  204 (288)
T ss_pred             --------------EecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH---------
Confidence                          99999999998 54 457788999999999999999999999999999999999987         


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccc-ccccCC
Q psy9060         280 ERTMEYLEEVAVNTASQLASGKLK-INRIKP  309 (366)
Q Consensus       280 ~~~~~~l~~~a~~~a~~la~~~~~-~~~~~~  309 (366)
                          +++.+.+.+++++|+..+.. +..+|.
T Consensus       205 ----~~l~~~a~~~a~~la~~~~~a~~~~K~  231 (288)
T PRK08290        205 ----DELEAETLELARRIAAMPPFGLRLTKR  231 (288)
T ss_pred             ----HHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                67999999999999988643 444443

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=1.8e-40  Score=310.30  Aligned_cols=200  Identities=27%  Similarity=0.377  Sum_probs=172.0

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-CCHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-KTADQVKQI  143 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~~~~~~~~~  143 (366)
                      +.++++++|++|+||||+ + |++|.+|+.+|.++++.++.|++++.+||++|.|+.||+|+||+++... ........+
T Consensus         2 ~~~~~~~~v~~i~Lnrp~-~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~   79 (239)
T PLN02267          2 CTLEKRGNLFILTLTGDG-E-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM   79 (239)
T ss_pred             ceeEecCCEEEEEeCCCC-c-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence            456778999999999997 4 9999999999999999999999987677789999999999999987532 122223334


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      ...+++++.++.++||||||+|||+|+|||++|+++||+|||+++. +                      +|++||+++|
T Consensus        80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~-a----------------------~f~~pe~~~G  136 (239)
T PLN02267         80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDR-G----------------------VLYMSEVDIG  136 (239)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCC-C----------------------eEeccccccC
Confidence            5566788899999999999999999999999999999999998542 2                      8999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHH-HHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         224 LLPGAGGTQRLPKLTALPNV-LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a-~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      ++++++++.++++++|..++ ++|+++|++++|+||+++||||+++|+.            +++.+.+.++|++|+..+
T Consensus       137 l~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~------------~~l~~~a~~~A~~ia~~~  203 (239)
T PLN02267        137 LPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSA------------EETVEAAVRLGEELAARK  203 (239)
T ss_pred             CCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCH------------HHHHHHHHHHHHHHhhcc
Confidence            97444458899999999999 6999999999999999999999999851            578899999999998764

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-40  Score=314.93  Aligned_cols=205  Identities=26%  Similarity=0.417  Sum_probs=176.5

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQV  140 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~~  140 (366)
                      ..+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++...  ......
T Consensus         6 ~~i~~~~~~~v~~i~lnrp~-~~Nal~~~~~~el~~~l~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (260)
T PRK07827          6 TLVRYAVDGGVATLTLDSPH-NRNALSARLVAQLHDGLRAAAADPAVRAVV-LTHTGGTFCAGADLSEAGGGGGDPYDAA   83 (260)
T ss_pred             cceEEEeeCCEEEEEEcCcc-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EEcCCCCccCCcChHHHhhcccCchhHH
Confidence            35778888999999999998 799999999999999999999999999755 58889999999999987542  111122


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+...+.+++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~  139 (260)
T PRK07827         84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPES------------------------TFALTEA  139 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCC------------------------EEeCccc
Confidence            2344556778899999999999999999999999999999999999877                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|+++++++++ ..++++|+++|+.++|+||+++||||++++               ++.+.+.++++++++.
T Consensus       140 ~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---------------~l~~~a~~~a~~la~~  203 (260)
T PRK07827        140 RIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD---------------DVDAAVAALLADLRRG  203 (260)
T ss_pred             ccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH---------------HHHHHHHHHHHHHHhC
Confidence            999999999999999875 569999999999999999999999999974               3778889999999987


Q ss_pred             ccc-ccccCC
Q psy9060         301 KLK-INRIKP  309 (366)
Q Consensus       301 ~~~-~~~~~~  309 (366)
                      +.. +..+|.
T Consensus       204 ~~~a~~~~K~  213 (260)
T PRK07827        204 SPQGLAESKA  213 (260)
T ss_pred             CHHHHHHHHH
Confidence            643 434443

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-40  Score=311.02  Aligned_cols=194  Identities=26%  Similarity=0.419  Sum_probs=168.6

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS  144 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  144 (366)
                      +.++++++|++||||||+ +.|++|.+|+.+|.++++.++.| ++++|| ++|.|+.||+|+|+++...      ...+.
T Consensus         2 ~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~~-~vr~vv-l~g~g~~F~aG~Dl~~~~~------~~~~~   72 (243)
T PRK07854          2 IGVTRDGQVLTIELQRPE-RRNALNAELCEELREAVRKAVDE-SARAIV-LTGQGTVFCAGADLSGDVY------ADDFP   72 (243)
T ss_pred             ceEEEeCCEEEEEeCCCc-cccCCCHHHHHHHHHHHHHHhcC-CceEEE-EECCCCceecccCCccchh------HHHHH
Confidence            567788999999999999 78999999999999999999865 899654 5889999999999985311      12233


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                      ..+..++..+.++|||+||+|||+|+|||++|+++||+|||++++                        +|++||+++|+
T Consensus        73 ~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~~~G~  128 (243)
T PRK07854         73 DALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEA------------------------YFQFPVAKYGI  128 (243)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCC------------------------EEecccccccc
Confidence            445678889999999999999999999999999999999999887                        99999999999


Q ss_pred             CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-
Q psy9060         225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-  303 (366)
Q Consensus       225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-  303 (366)
                      +|++|++++|++++|..+|++|+++|++++|+||+++||||+|++.             +    .+.+++++|+..+.. 
T Consensus       129 ~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-------------~----~a~~~a~~l~~~~~~a  191 (243)
T PRK07854        129 ALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTL-------------A----DAQAWAAEIAGLAPLA  191 (243)
T ss_pred             CCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccCH-------------H----HHHHHHHHHHhCCHHH
Confidence            9999999999999999999999999999999999999999999752             2    578888888887543 


Q ss_pred             ccccC
Q psy9060         304 INRIK  308 (366)
Q Consensus       304 ~~~~~  308 (366)
                      +...|
T Consensus       192 ~~~~K  196 (243)
T PRK07854        192 LQHAK  196 (243)
T ss_pred             HHHHH
Confidence            43344

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=3.2e-40  Score=310.77  Aligned_cols=191  Identities=25%  Similarity=0.414  Sum_probs=164.9

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS  144 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  144 (366)
                      +.++++++|++||||||+  .|++|.+|+++|.++++.++.|++++++| ++|.|++||+|.|++++..    .....+.
T Consensus         3 v~~~~~~~v~~itlnrp~--~Nal~~~~~~~l~~~l~~~~~~~~vr~vV-l~g~g~~FcaG~Dl~~~~~----~~~~~~~   75 (251)
T TIGR03189         3 VWLERDGKLLRLRLARPK--ANIVDAAMIAALSAALGEHLEDSALRAVL-LDAEGPHFSFGASVAEHMP----DQCAAML   75 (251)
T ss_pred             EEEEeeCCEEEEEeCCCC--cCCCCHHHHHHHHHHHHHHHcCCCceEEE-EECCCCceecCcChhhhCc----hhHHHHH
Confidence            567888999999999996  49999999999999999999999999655 5899999999999997532    1112233


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                      ....+++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++|+
T Consensus        76 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~~~Gl  131 (251)
T TIGR03189        76 ASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA------------------------KLGQPEIVLGV  131 (251)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCC------------------------EEeCchhhcCC
Confidence            455678889999999999999999999999999999999999987                        99999999999


Q ss_pred             CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHH-HHHHhcCcc
Q psy9060         225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT-ASQLASGKL  302 (366)
Q Consensus       225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~-a~~la~~~~  302 (366)
                      +|+ +++++|++++|..+|++|+++|++++|+||+++||||+|+++             .+  +.+.++ +++++..++
T Consensus       132 ~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-------------~~--~~a~~~~a~~la~~~p  194 (251)
T TIGR03189       132 FAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED-------------PE--NAALAWFDEHPAKLSA  194 (251)
T ss_pred             CCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc-------------HH--HHHHHHHHHHHHhCCH
Confidence            997 467899999999999999999999999999999999999975             22  345555 577777654

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=3.5e-40  Score=318.31  Aligned_cols=209  Identities=18%  Similarity=0.289  Sum_probs=176.7

Q ss_pred             CCcceeEEE--eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-------CcEEcCCCcchh
Q psy9060          61 STKHFKEKA--VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-------GCFIAGADISML  131 (366)
Q Consensus        61 ~~~~i~~~~--~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-------~~F~aG~Dl~~~  131 (366)
                      .++.+.+++  +++|++||||||+ +.|++|.+|+.+|.++++.++.|+++++||| +|.|       ++||+|+||+++
T Consensus        21 ~~~~i~~~~~~~~~va~itlnrP~-~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl-tg~g~~~~~~~~~FcaG~Dl~~~   98 (302)
T PRK08321         21 DFTDITYHRAVDQGTVRIAFDRPE-VRNAFRPHTVDELYRALDHARMSPDVGCVLL-TGNGPSPKDGGWAFCSGGDQRIR   98 (302)
T ss_pred             CceeEEEEEecCCCEEEEEeCCcc-cccCCCHHHHHHHHHHHHHHhhCCCcEEEEE-eCCCCCCCCCCCeeecCcChhhh
Confidence            456788888  8899999999999 7899999999999999999999999997554 7766       599999999976


Q ss_pred             hhcC------CH-H--HHHHHH-HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEe-cCCccCCCchhhhh
Q psy9060         132 AACK------TA-D--QVKQIS-KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV-KDKKTGLGLPEVAL  200 (366)
Q Consensus       132 ~~~~------~~-~--~~~~~~-~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~-~~ak~~~~~~~~~~  200 (366)
                      ....      .. .  ...... ....+++..+..+||||||+|||+|+|||++|+++||+|||+ +++           
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a-----------  167 (302)
T PRK08321         99 GRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHA-----------  167 (302)
T ss_pred             ccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCC-----------
Confidence            3210      00 0  000111 112346677889999999999999999999999999999999 566           


Q ss_pred             hhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcch
Q psy9060         201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE  280 (366)
Q Consensus       201 ~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~  280 (366)
                                   +|++||+++|++|+++++.+|++++|..+|++|+++|+.++|+||+++||||++||+          
T Consensus       168 -------------~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~----------  224 (302)
T PRK08321        168 -------------RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPH----------  224 (302)
T ss_pred             -------------EEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCH----------
Confidence                         899999999999999999999999999999999999999999999999999999987          


Q ss_pred             hhHHHHHHHHHHHHHHHhcCccc-ccccC
Q psy9060         281 RTMEYLEEVAVNTASQLASGKLK-INRIK  308 (366)
Q Consensus       281 ~~~~~l~~~a~~~a~~la~~~~~-~~~~~  308 (366)
                         +++.+.+.+++++|+..+.. +..+|
T Consensus       225 ---~~l~~~a~~~a~~la~~~~~a~~~~K  250 (302)
T PRK08321        225 ---AELETEALEWAREINGKSPTAMRMLK  250 (302)
T ss_pred             ---HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence               67999999999999987643 44444

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-40  Score=317.90  Aligned_cols=206  Identities=23%  Similarity=0.371  Sum_probs=176.0

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH---
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA---  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~---  137 (366)
                      +++.+.++.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++......   
T Consensus         8 ~~~~v~~e~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~al~~~~~d~~vrvvV-l~G~G~~FcaG~Dl~~~~~~~~~~~~   85 (302)
T PRK08272          8 NLKTMTYEVTGRIARITLNRPE-KGNAITADTPLELRAAVERADLDPGVHVIL-VSGAGKGFCAGYDLSAYAEGSSSGGG   85 (302)
T ss_pred             CCCeEEEEeECCEEEEEecCcc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EEcCCCCcccCcCHHHHhhccccccc
Confidence            4567889999999999999999 799999999999999999999999999655 58999999999999987542110   


Q ss_pred             -------------------HHH--HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCch
Q psy9060         138 -------------------DQV--KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLP  196 (366)
Q Consensus       138 -------------------~~~--~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~  196 (366)
                                         ...  .......++++..+.++||||||+|||+|+|||++|+++||+|||++++       
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a-------  158 (302)
T PRK08272         86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDA-------  158 (302)
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCC-------
Confidence                               000  0123445677889999999999999999999999999999999999987       


Q ss_pred             hhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCC
Q psy9060         197 EVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLN  276 (366)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~  276 (366)
                                       +|++||+++|.+|+.   .++++++|..+|++|++||++++++||+++||||+++|+      
T Consensus       159 -----------------~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~------  212 (302)
T PRK08272        159 -----------------KIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP------  212 (302)
T ss_pred             -----------------EecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCH------
Confidence                             999999998666653   367889999999999999999999999999999999987      


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCccc-ccccC
Q psy9060         277 HPEERTMEYLEEVAVNTASQLASGKLK-INRIK  308 (366)
Q Consensus       277 ~~~~~~~~~l~~~a~~~a~~la~~~~~-~~~~~  308 (366)
                             +++.+.+.++|++|+..+.. +...|
T Consensus       213 -------~~l~~~a~~la~~ia~~~~~a~~~~K  238 (302)
T PRK08272        213 -------EELDERTERLVERIAAVPVNQLAMVK  238 (302)
T ss_pred             -------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                   78999999999999987643 33344

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-40  Score=309.08  Aligned_cols=198  Identities=27%  Similarity=0.367  Sum_probs=171.8

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS  144 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  144 (366)
                      +.++.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|+.||+|.|++++...    ....+.
T Consensus         2 i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~a~~~~~~d~~vr~vV-l~g~g~~F~aG~Dl~~~~~~----~~~~~~   75 (248)
T PRK06072          2 IKVESREGYAIVTMSRPD-KLNALNLEMRNEFISKLKQINADPKIRVVI-VTGEGRAFCVGADLSEFAPD----FAIDLR   75 (248)
T ss_pred             eEEEEECCEEEEEECCcc-cccCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCCcccCcCHHHHhhh----hHHHHH
Confidence            467788999999999998 799999999999999999999999999755 57889999999999987531    112234


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                      +.++.++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++|+
T Consensus        76 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~~~~~~Gl  131 (248)
T PRK06072         76 ETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDV------------------------KFVTAFQRLGL  131 (248)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC------------------------EEecchhhcCc
Confidence            456678889999999999999999999999999999999999987                        89999999999


Q ss_pred             CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-c
Q psy9060         225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-K  303 (366)
Q Consensus       225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-~  303 (366)
                      +|++|+++++++++|. ++++++++|+.++|+||+++||||++ +               ++.+.+.++|++++..++ .
T Consensus       132 ~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~-~---------------~~~~~a~~~a~~la~~~~~a  194 (248)
T PRK06072        132 ASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS-E---------------DPLSDAEEMANRISNGPFQS  194 (248)
T ss_pred             CCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc-c---------------hHHHHHHHHHHHHHhCCHHH
Confidence            9999999999999996 89999999999999999999999953 2               245778899999988764 3


Q ss_pred             ccccCC
Q psy9060         304 INRIKP  309 (366)
Q Consensus       304 ~~~~~~  309 (366)
                      +..+|.
T Consensus       195 ~~~~K~  200 (248)
T PRK06072        195 YIAAKR  200 (248)
T ss_pred             HHHHHH
Confidence            444453

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-39  Score=302.70  Aligned_cols=195  Identities=24%  Similarity=0.392  Sum_probs=173.7

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI  143 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~  143 (366)
                      .+.++.+++|++|+||||+  .|++|.+++++|.++++.++  +++++ ||++|.|+.||+|+|++++...  ......+
T Consensus         4 ~i~~~~~~~v~~itln~~~--~Nal~~~~~~~l~~~l~~~~--~~~~v-vvl~g~g~~F~~G~Dl~~~~~~--~~~~~~~   76 (229)
T PRK06213          4 LVSYTLEDGVATITLDDGK--VNALSPAMIDALNAALDQAE--DDRAV-VVITGQPGIFSGGFDLKVMTSG--AQAAIAL   76 (229)
T ss_pred             eEEEEecCCEEEEEeCCCC--CCCCCHHHHHHHHHHHHHhh--ccCcE-EEEeCCCCceEcCcCHHHHhcc--hHhHHHH
Confidence            5788888999999999985  69999999999999999987  45675 5568999999999999988642  2333445


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC-CccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD-KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      ...+.+++.++.++||||||+|||+|+|||++|+++|||||++++ +                        +|++||+++
T Consensus        77 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a------------------------~f~~pe~~~  132 (229)
T PRK06213         77 LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPF------------------------KIGLNEVAI  132 (229)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCc------------------------EEECchhhh
Confidence            556678889999999999999999999999999999999999987 5                        899999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|+++++.++++++|...+++++++|+.++++||+++||||+|+|+             +++.+.+.+++++++..+.
T Consensus       133 Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~  199 (229)
T PRK06213        133 GMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPP-------------EQLLARAQAAARELAGLNM  199 (229)
T ss_pred             CCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccCh-------------HHHHHHHHHHHHHHhcCCH
Confidence            999888888999999999999999999999999999999999999987             6789999999999987654

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=7.8e-40  Score=325.10  Aligned_cols=198  Identities=22%  Similarity=0.354  Sum_probs=169.7

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC---CHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK---TAD  138 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~---~~~  138 (366)
                      ...+.++++++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++| |++|.|++||+|+||+++....   ...
T Consensus        36 ~~~V~~e~~g~v~~ItLNRP~-~lNALs~~m~~~L~~al~~~~~D~~vrvV-Vl~G~GkaFcAGgDl~~l~~~~~~~~~~  113 (401)
T PLN02157         36 DYQVLVEGSGCSRTAILNRPP-ALNALTTHMGYRLQKLYKNWEEDPNIGFV-MMKGSGRAFCAGGDIVSLYHLRKRGSPD  113 (401)
T ss_pred             CCceEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHhhCCCCeEE-EEECCCCCccCCcCHHHHHhhccccchH
Confidence            345778889999999999999 79999999999999999999999999965 5588889999999999886421   111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+.....+++..|.++|||+||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus       114 ~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a------------------------~fa~P  169 (401)
T PLN02157        114 AIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRT------------------------IFATP  169 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCC------------------------EEECh
Confidence            222333344456778999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|+|++|. .+++|++||+.++++||+++||||++||+             +++ +.+.+++.+++
T Consensus       170 E~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-------------~~l-~~~~~~~~~i~  234 (401)
T PLN02157        170 ETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRS-------------EEI-PVMEEQLKKLL  234 (401)
T ss_pred             hhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCH-------------hHH-HHHHHHHHHHH
Confidence            9999999999999999999995 89999999999999999999999999987             445 44556666666


Q ss_pred             cC
Q psy9060         299 SG  300 (366)
Q Consensus       299 ~~  300 (366)
                      ..
T Consensus       235 ~~  236 (401)
T PLN02157        235 TD  236 (401)
T ss_pred             cC
Confidence            54

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1e-39  Score=308.04  Aligned_cols=204  Identities=22%  Similarity=0.303  Sum_probs=169.9

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH-H
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ-V  140 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~-~  140 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++  ++++++ |++|.|++||+|+||+++........ .
T Consensus         3 ~~~i~~~~~~~i~~itlnrp~-~~Nal~~~~~~~L~~~l~~~~--~~vr~v-Vl~g~g~~FsaG~Dl~~~~~~~~~~~~~   78 (255)
T PRK07112          3 YQTIRVRQQGDVCFLQLHRPE-AQNTINDRLIAECMDVLDRCE--HAATIV-VLEGLPEVFCFGADFSAIAEKPDAGRAD   78 (255)
T ss_pred             CceEEEEeeCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHhh--cCceEE-EEEcCCCCcccCcCHHHHhhccccchhh
Confidence            567889999999999999998 789999999999999999998  358865 45888999999999998764221111 1


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      .........++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a------------------------~f~~pe~  134 (255)
T PRK07112         79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETA------------------------PFSLSEL  134 (255)
T ss_pred             hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCC------------------------EEeCchh
Confidence            1112344678889999999999999999999999999999999999876                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|+++ +.+|++++|..++++|+++|+.++|+||+++||||+|+|+             ++  ..+.+++++++..
T Consensus       135 ~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~--~~~~~~a~~l~~~  198 (255)
T PRK07112        135 LFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN-------------SD--TLLRKHLLRLRCL  198 (255)
T ss_pred             hhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCc-------------HH--HHHHHHHHHHHhC
Confidence            999999865 5689999999999999999999999999999999999986             22  2356788888777


Q ss_pred             cc-cccccCC
Q psy9060         301 KL-KINRIKP  309 (366)
Q Consensus       301 ~~-~~~~~~~  309 (366)
                      ++ .+..+|.
T Consensus       199 ~p~a~~~~K~  208 (255)
T PRK07112        199 NKAAVARYKS  208 (255)
T ss_pred             CHHHHHHHHH
Confidence            54 3444443

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=8.8e-40  Score=320.38  Aligned_cols=180  Identities=27%  Similarity=0.436  Sum_probs=159.1

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC---CHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK---TADQ  139 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~---~~~~  139 (366)
                      .+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.| +.||+|+|++++....   ....
T Consensus         4 ~v~~~~~~~v~~itLnrP~-~~Nal~~~m~~~L~~~l~~~~~d~~vrvvV-ltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (342)
T PRK05617          4 EVLAEVEGGVGVITLNRPK-ALNALSLEMIRAIDAALDAWEDDDAVAAVV-IEGAGERGFCAGGDIRALYEAARAGDPLA   81 (342)
T ss_pred             eEEEEEECCEEEEEECCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence            5788889999999999999 799999999999999999999999999755 57777 8999999999875421   1111


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+.....+++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a------------------------~f~~pe  137 (342)
T PRK05617         82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERT------------------------KMAMPE  137 (342)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCC------------------------EeeCCc
Confidence            11233344568889999999999999999999999999999999999887                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +++|++|++|++++|++++| .+|++|++||+.++|+||+++||||+++|+
T Consensus       138 ~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~  187 (342)
T PRK05617        138 TGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPS  187 (342)
T ss_pred             cccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCH
Confidence            99999999999999999877 789999999999999999999999999987

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-39  Score=314.46  Aligned_cols=205  Identities=25%  Similarity=0.337  Sum_probs=169.1

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcch-hhh----c--
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM-LAA----C--  134 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~-~~~----~--  134 (366)
                      ++.+.++++++|++|+||||+ +.|+||.+|+++|.++++.++.|++|++|| ++|.|++||+|+||++ +..    .  
T Consensus         4 ~~~v~~~~~~~Va~ItLnrP~-~~NAl~~~~~~eL~~al~~~~~d~~vrvvV-LtG~G~~FcaG~Dl~~~~~~~~~~~~~   81 (298)
T PRK12478          4 FQTLLYTTAGPVATITLNRPE-QLNTIVPPMPDEIEAAIGLAERDQDIKVIV-LRGAGRAFSGGYDFGGGFQHWGEAMMT   81 (298)
T ss_pred             ceEEEEeccCCEEEEEecCCc-ccCCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCcccCcCccccccccchhccc
Confidence            456888889999999999999 799999999999999999999999999755 5899999999999986 311    0  


Q ss_pred             CC-HHHHHHH---HH---HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhh
Q psy9060         135 KT-ADQVKQI---SK---SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIV  207 (366)
Q Consensus       135 ~~-~~~~~~~---~~---~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~  207 (366)
                      .. ......+   ..   ..+..+..+.++||||||+|||+|+|||++|+++||+|||++++                  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A------------------  143 (298)
T PRK12478         82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDA------------------  143 (298)
T ss_pred             ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCc------------------
Confidence            00 0001111   11   11345677899999999999999999999999999999999987                  


Q ss_pred             cccccccccccchhc-cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHH
Q psy9060         208 VKDKKTGLGLPEVML-GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL  286 (366)
Q Consensus       208 ~~~~~~~~~~pe~~~-Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l  286 (366)
                            +|++||+++ |++++  +++  .+++|..+|++|+++|++++|+||+++||||+|||+             +++
T Consensus       144 ------~f~~pe~~l~G~~~~--~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-------------~~l  200 (298)
T PRK12478        144 ------VIGTPYSRMWGAYLT--GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF-------------ERL  200 (298)
T ss_pred             ------EEeccccccccCCch--hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCH-------------HHH
Confidence                  999999997 88863  333  356999999999999999999999999999999997             789


Q ss_pred             HHHHHHHHHHHhcCccc-ccccCC
Q psy9060         287 EEVAVNTASQLASGKLK-INRIKP  309 (366)
Q Consensus       287 ~~~a~~~a~~la~~~~~-~~~~~~  309 (366)
                      .+.+.+++++|+..+.. +...|.
T Consensus       201 ~~~a~~~a~~la~~~p~a~~~~K~  224 (298)
T PRK12478        201 EARVAEVATELARIPLSQLQAQKL  224 (298)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHH
Confidence            99999999999987543 444453

>KOG1679|consensus

Probab=100.00  E-value=1.7e-40  Score=295.13  Aligned_cols=212  Identities=29%  Similarity=0.544  Sum_probs=189.3

Q ss_pred             CcceeEEE----eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH
Q psy9060          62 TKHFKEKA----VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA  137 (366)
Q Consensus        62 ~~~i~~~~----~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~  137 (366)
                      ...+.+++    +.+|.+|-+|||. +.|.++.-|+++|.++++.+..|+.+|+|++.|..++.||+|+||++...+ ++
T Consensus        26 ~~Ev~v~~L~g~~~GItvl~mNRpa-~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M-s~  103 (291)
T KOG1679|consen   26 ANEVFVRRLTGKDEGITILNMNRPA-KKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM-SP  103 (291)
T ss_pred             CceeeeeeccCCCCCeEEEecCChh-hhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC-CH
Confidence            34566654    5689999999998 789999999999999999999999999999889999999999999998774 56


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      .+...+...+..++..|+++|.|+||+|+|.++|||+|++|+||+|+|++++                        +||+
T Consensus       104 ~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~a------------------------kmGL  159 (291)
T KOG1679|consen  104 SEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSA------------------------KMGL  159 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhc------------------------cccc
Confidence            7888899999999999999999999999999999999999999999999987                        8999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      +|.+++++||+||||||||.+|...|+++++|++.+++.||...||||.+|....         ..+...+.|.++|++|
T Consensus       160 vET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qne---------egdaa~~kal~lA~ei  230 (291)
T KOG1679|consen  160 VETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNE---------EGDAAYQKALELAREI  230 (291)
T ss_pred             cccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCc---------cccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999997521         1145677889999987


Q ss_pred             hcC-cccccccC
Q psy9060         298 ASG-KLKINRIK  308 (366)
Q Consensus       298 a~~-~~~~~~~~  308 (366)
                      ... |..++..|
T Consensus       231 lp~gPiavr~aK  242 (291)
T KOG1679|consen  231 LPQGPIAVRLAK  242 (291)
T ss_pred             ccCCchhhhHHH
Confidence            654 55554444

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=3e-39  Score=320.37  Aligned_cols=185  Identities=22%  Similarity=0.353  Sum_probs=161.6

Q ss_pred             ccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-CH
Q psy9060          59 KNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-TA  137 (366)
Q Consensus        59 k~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-~~  137 (366)
                      ......+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++.... ..
T Consensus         7 ~~~~~~v~~~~~~~v~~ItLnrP~-~~Nal~~~m~~eL~~al~~~~~d~~vrvvV-l~g~g~~FcaG~Dl~~~~~~~~~~   84 (379)
T PLN02874          7 NPAEEVVLGEEKGRVRVITLNRPR-QLNVISLSVVSLLAEFLEQWEKDDSVELII-IKGAGRAFSAGGDLKMFYDGRESD   84 (379)
T ss_pred             CCCCCceEEEEECCEEEEEECCCc-cccCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCCccCccCHHHHHhhcccc
Confidence            344567888889999999999999 789999999999999999999999999655 588889999999999885421 11


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      ............++..|.++|||+||+|||+|+|||++|+++||+||+++++                        +|++
T Consensus        85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a------------------------~f~~  140 (379)
T PLN02874         85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKT------------------------VFAT  140 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCe------------------------EEec
Confidence            1222223334456778999999999999999999999999999999999887                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ||+++|++|++|++++|+|++|. .+++|++||++++++||+++||||++||+
T Consensus       141 pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~  192 (379)
T PLN02874        141 PEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPS  192 (379)
T ss_pred             cccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCH
Confidence            99999999999999999999885 89999999999999999999999999986

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=7.1e-39  Score=310.66  Aligned_cols=172  Identities=24%  Similarity=0.370  Sum_probs=155.1

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC--CHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK--TADQVKQISKSGQQ  149 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~--~~~~~~~~~~~~~~  149 (366)
                      +++|+||||+ +.|++|.+|+.+|.++++.+..|++|++|| ++|.| ++||+|+|++++....  +......+.+.+++
T Consensus        38 ~A~ItLNRP~-k~NAls~~ml~eL~~al~~~~~D~dVrvVV-LTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~  115 (360)
T TIGR03200        38 NAWIILDNPK-QYNSYTTDMVKAIILAFRRASSDRDVVAVV-FTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFND  115 (360)
T ss_pred             EEEEEECCCC-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHH
Confidence            4569999998 789999999999999999999999999755 47777 6999999999886521  22333445555678


Q ss_pred             HHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh
Q psy9060         150 ILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG  229 (366)
Q Consensus       150 ~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g  229 (366)
                      ++..+..+||||||+|||+|+|||++|+++||+||+++++                        +|++||+++|++|++|
T Consensus       116 l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A------------------------~Fg~PE~rlGl~P~~G  171 (360)
T TIGR03200       116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLA------------------------NFGQAGPKHGSAPIGG  171 (360)
T ss_pred             HHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCC------------------------EEeCchhccCCCCCcc
Confidence            8899999999999999999999999999999999999987                        9999999999999999


Q ss_pred             HHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       230 g~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ++++|++++|..+|++|+++|++++|+||+++||||+|+|+
T Consensus       172 gt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~  212 (360)
T TIGR03200       172 ATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA  212 (360)
T ss_pred             HHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCc
Confidence            99999999999999999999999999999999999999987

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=6.6e-38  Score=310.15  Aligned_cols=195  Identities=21%  Similarity=0.371  Sum_probs=166.0

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH---HHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA---DQV  140 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~---~~~  140 (366)
                      .+.++.+++|++|+||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.|++||+|+|++++......   ...
T Consensus        10 ~v~~~~~~~i~~ItLnRP~-~lNALs~~m~~~L~~al~~~~~d~~v~~VV-l~G~G~~FcAGgDl~~l~~~~~~~~~~~~   87 (381)
T PLN02988         10 QVLVEEKSSVRILTLNRPK-QLNALSFHMISRLLQLFLAFEEDPSVKLVI-LKGHGRAFCAGGDVAAVVRDIEQGNWRLG   87 (381)
T ss_pred             ceEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCeeEEE-EECCCCCcccCcCHHHHHhhhcccchhHH
Confidence            5777888999999999999 799999999999999999999999999755 58888999999999987532111   111


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+......+...+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        88 ~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a------------------------~f~mPE~  143 (381)
T PLN02988         88 ANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENT------------------------VFAMPET  143 (381)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCc------------------------EEeChhh
Confidence            2222223345667899999999999999999999999999999999876                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      ++|++|+.|++++|+|++|. .+++|++||+++++++|+++||||++||+             +++.+.+.+++ +++.
T Consensus       144 ~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-------------~~l~~~~~~la-~~~~  207 (381)
T PLN02988        144 ALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPS-------------TRLTALEADLC-RIGS  207 (381)
T ss_pred             hcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCH-------------hHHHHHHHHHH-Hhhc
Confidence            99999999999999999997 68999999999999999999999999987             55666666666 4443

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=9.8e-38  Score=320.22  Aligned_cols=204  Identities=21%  Similarity=0.265  Sum_probs=173.2

Q ss_pred             eeEEEeCCEEEEEecCCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCccEEEEEeeCCCc-EEcCCCcc
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKV-------------NSLNSEVMSEIQSILRRIQS-DSSIRSAVIISGKPGC-FIAGADIS  129 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~-------------Nal~~~~~~eL~~al~~~~~-d~~v~~vVl~~g~g~~-F~aG~Dl~  129 (366)
                      +.++++++|++||||||+ +.             |+++.+|+.+|.++++.++. |++|+++| ++|.|+. ||+|+||+
T Consensus       260 v~~~~~~~va~itlnrP~-~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vV-l~g~G~~~F~aG~Dl~  337 (546)
T TIGR03222       260 VAIDRAARTATITLKGPK-AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWV-FRTQGDAELVLAADAL  337 (546)
T ss_pred             EEEeccCCEEEEEecChh-hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEE-EEcCCCCceecCcCcc
Confidence            344557899999999998 78             99999999999999999984 59999755 5788887 99999998


Q ss_pred             hhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe-ccccchhH-HHHHhhccEEEE-------ecCCccCCCchhhhh
Q psy9060         130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI-SGSCLGGG-LEVALACHYRIA-------VKDKKTGLGLPEVAL  200 (366)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav-~G~a~GgG-~elalacD~ria-------~~~ak~~~~~~~~~~  200 (366)
                      .+.. .+...........+.++.+|.++|||+||+| ||+|+||| ++|+++||+||+       ++++           
T Consensus       338 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a-----------  405 (546)
T TIGR03222       338 LEAH-KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEP-----------  405 (546)
T ss_pred             cccc-ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCC-----------
Confidence            4322 1111122233344668899999999999999 89999999 999999999999       7776           


Q ss_pred             hhhhhhhcccccccccccchhccCCCChhHHhHHhhhc-CHHHH--HHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCC
Q psy9060         201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT-ALPNV--LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNH  277 (366)
Q Consensus       201 ~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~-G~~~a--~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~  277 (366)
                                   +|++||+++|++|++|++++|++++ |..++  ++|+++|+.++|+||+++|||++|+|+       
T Consensus       406 -------------~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-------  465 (546)
T TIGR03222       406 -------------AITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-------  465 (546)
T ss_pred             -------------EEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-------
Confidence                         9999999999999999999999998 99999  559999999999999999999999987       


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCcc-cccccC
Q psy9060         278 PEERTMEYLEEVAVNTASQLASGKL-KINRIK  308 (366)
Q Consensus       278 ~~~~~~~~l~~~a~~~a~~la~~~~-~~~~~~  308 (366)
                            +++++.+.+++++|++.++ .+...|
T Consensus       466 ------~~l~~~a~~~a~~la~~~p~a~~~~K  491 (546)
T TIGR03222       466 ------IDWEDEIRIALEERASFSPDALTGLE  491 (546)
T ss_pred             ------hHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                  6788999999999998864 344444

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=9.9e-38  Score=321.04  Aligned_cols=207  Identities=20%  Similarity=0.308  Sum_probs=173.4

Q ss_pred             CcceeEEE--eCCEEEEEecCCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCccEEEEEeeCC-CcEEc
Q psy9060          62 TKHFKEKA--VGDVLVVTLDSPGVKV-------------NSLNSEVMSEIQSILRRIQS-DSSIRSAVIISGKP-GCFIA  124 (366)
Q Consensus        62 ~~~i~~~~--~~~Va~Itlnrp~~~~-------------Nal~~~~~~eL~~al~~~~~-d~~v~~vVl~~g~g-~~F~a  124 (366)
                      ++++.++.  +++|++||||||+ +.             |+||.+|+.+|.++++.++. |++||+|| ++|.| ++||+
T Consensus       259 ~~~~~v~~~~~~~va~itlnrP~-~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vV-ltg~G~~~F~a  336 (550)
T PRK08184        259 YRHVDVEIDRAARTATITVKAPT-AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWV-LKTEGDAAAVL  336 (550)
T ss_pred             eEEEEEEEEccCCEEEEEEeCcc-cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEE-EEcCCCCcEEe
Confidence            44455544  5899999999998 56             79999999999999999986 79999755 57777 49999


Q ss_pred             CCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec-cccchhH-HHHHhhccEEEEe-------cCCccCCCc
Q psy9060         125 GADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS-GSCLGGG-LEVALACHYRIAV-------KDKKTGLGL  195 (366)
Q Consensus       125 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~-G~a~GgG-~elalacD~ria~-------~~ak~~~~~  195 (366)
                      |+||+.+.. .+...........+.++.+|.++||||||+|| |+|+||| ++|+|+||+|||+       +++      
T Consensus       337 G~Dl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a------  409 (550)
T PRK08184        337 AADATLLAH-KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAP------  409 (550)
T ss_pred             CCChhhhcc-cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCC------
Confidence            999874321 11111122334456688899999999999997 9999999 9999999999999       555      


Q ss_pred             hhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhh-cCHHHHHHH--HhcCCCcCHHHHHHcCCcceecCCCC
Q psy9060         196 PEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL-TALPNVLDM--TLTGKTLKADKAKKMGIVDQLVEPLG  272 (366)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~-~G~~~a~~l--~ltG~~~~a~eA~~~GLVd~vv~~~~  272 (366)
                                        +|++||+++|++|++|++++|+++ +|..+|+++  +++|++++|+||+++||||+|+|+  
T Consensus       410 ------------------~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~--  469 (550)
T PRK08184        410 ------------------AITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD--  469 (550)
T ss_pred             ------------------EEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh--
Confidence                              999999999999999999999998 699999997  589999999999999999999997  


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCcc-cccccC
Q psy9060         273 PGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRIK  308 (366)
Q Consensus       273 ~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-~~~~~~  308 (366)
                                 +++++.+.+++++|++.++ .+...|
T Consensus       470 -----------~~l~~~a~~~a~~ia~~~p~a~~~~K  495 (550)
T PRK08184        470 -----------IDWEDEVRIALEERASLSPDALTGME  495 (550)
T ss_pred             -----------HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                       6789999999999998864 344445

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=5.1e-37  Score=277.09  Aligned_cols=193  Identities=40%  Similarity=0.675  Sum_probs=174.9

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH-HHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD-QVKQI  143 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~  143 (366)
                      +.++++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++++| ++|.++.||+|.|++++....... ....+
T Consensus         1 i~~~~~~~i~~i~l~~~~-~~N~~~~~~~~~l~~~l~~~~~d~~~~~vv-l~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~   78 (195)
T cd06558           1 VLVERDGGVATITLNRPE-KRNALSLEMLDELAAALDEAEADPDVRVVV-LTGAGKAFCAGADLKELAALSDAGEEARAF   78 (195)
T ss_pred             CEEEEECCEEEEEECCcc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCceEeCcCHHHHhcccccchhHHHH
Confidence            356778899999999998 789999999999999999999999999755 467799999999999987644322 25567


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      .+.+++++..+.+++||+|++|||+|.|+|++++++||+||+++++                        +|++||+++|
T Consensus        79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~------------------------~~~~pe~~~G  134 (195)
T cd06558          79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDA------------------------KFGLPEVKLG  134 (195)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCC------------------------EEechhhhcC
Confidence            7788999999999999999999999999999999999999999986                        9999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      ++|++|++.+|++++|...+.+++++|+.++++||+++||||++++.             +++.+.+.+++++
T Consensus       135 ~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-------------~~l~~~a~~~a~~  194 (195)
T cd06558         135 LVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPD-------------EELLAAALELARR  194 (195)
T ss_pred             CCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCh-------------hHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999986             6788888888765

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=4e-37  Score=315.68  Aligned_cols=208  Identities=30%  Similarity=0.483  Sum_probs=174.8

Q ss_pred             cCCcceeEEEeCCEEEEEecCCC---------CCCCCCCHHHHHHHHHHHHHhh-cCCCccEEEEEeeCCCcEEcCCCcc
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPG---------VKVNSLNSEVMSEIQSILRRIQ-SDSSIRSAVIISGKPGCFIAGADIS  129 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~---------~~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~~g~g~~F~aG~Dl~  129 (366)
                      ..++++.++++++|++|+||||+         .+.|++|.+|+++|.++++.++ .|+++|+|||+++.|+.||+|+|++
T Consensus         8 ~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~   87 (546)
T TIGR03222         8 SQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIF   87 (546)
T ss_pred             CCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHH
Confidence            34678899999999999999974         2689999999999999999999 7899997665434468999999999


Q ss_pred             hhhhcCCHH--HHHHHH-HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhh
Q psy9060         130 MLAACKTAD--QVKQIS-KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRI  206 (366)
Q Consensus       130 ~~~~~~~~~--~~~~~~-~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~  206 (366)
                      ++.......  ...... .....+...+.++||||||+|||+|+|||++|+++||+||+++++++               
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a---------------  152 (546)
T TIGR03222        88 MLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSS---------------  152 (546)
T ss_pred             HHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCc---------------
Confidence            875421111  111111 11234556678899999999999999999999999999999987444               


Q ss_pred             hcccccccccccchh-ccCCCChhHHhHHh--hhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhH
Q psy9060         207 VVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTM  283 (366)
Q Consensus       207 ~~~~~~~~~~~pe~~-~Gl~p~~gg~~~l~--r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~  283 (366)
                             +|++||++ +|++|++|++++++  +++|..+|++|+++|+.++++||++|||||+|||+             
T Consensus       153 -------~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-------------  212 (546)
T TIGR03222       153 -------SVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-------------  212 (546)
T ss_pred             -------EEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeCh-------------
Confidence                   89999997 99999999999997  79999999999999999999999999999999987             


Q ss_pred             HHHHHHHHHHHHHHhcCcc
Q psy9060         284 EYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       284 ~~l~~~a~~~a~~la~~~~  302 (366)
                      +++.+.+.+++++|++.+.
T Consensus       213 ~~l~~~a~~lA~~la~~~p  231 (546)
T TIGR03222       213 SQFDAAIAERAAELAAQSD  231 (546)
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            6789999999999998754

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.1e-36  Score=302.70  Aligned_cols=182  Identities=19%  Similarity=0.309  Sum_probs=163.1

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC---CHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK---TAD  138 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~---~~~  138 (366)
                      .+.+.++..+++++|+||||+ +.|+||.+|+.+|.++++.++.|++|++| |++|.|++||+|+|++++....   ...
T Consensus        41 ~~~v~~e~~~~~~~ItLNRP~-~lNALs~~m~~eL~~al~~~~~D~~vrvV-VL~G~GkaFcAGgDl~~l~~~~~~~~~~  118 (407)
T PLN02851         41 QDQVLVEGRAKSRAAILNRPS-SLNALTIPMVARLKRLYESWEENPDIGFV-LMKGSGRAFCSGADVVSLYHLINEGNVE  118 (407)
T ss_pred             CCCeEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEE-EEECCCCCccCCcCHHHHHhhccccchH
Confidence            456788889999999999999 89999999999999999999999999965 5588899999999999886421   122


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+.....++...|.++|||+||+|||.|+|||++|+++||+||+++++                        +|++|
T Consensus       119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a------------------------~famP  174 (407)
T PLN02851        119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKT------------------------VFAHP  174 (407)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCc------------------------eEecc
Confidence            334455566777888999999999999999999999999999999999976                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      |+++|++|+.|++++|+|+.|.. +++|++||+++++++|+++||+|+++|+
T Consensus       175 E~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~v~~  225 (407)
T PLN02851        175 EVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHYCLN  225 (407)
T ss_pred             hhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceeecCH
Confidence            99999999999999999999975 9999999999999999999999999987

>KOG1681|consensus

Probab=100.00  E-value=2.5e-37  Score=277.20  Aligned_cols=210  Identities=29%  Similarity=0.466  Sum_probs=183.6

Q ss_pred             CCcceeEEE---eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---
Q psy9060          61 STKHFKEKA---VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC---  134 (366)
Q Consensus        61 ~~~~i~~~~---~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~---  134 (366)
                      .++...+.+   +.-|..+.||||. +.|++|..|+.|+.++++.+..||++|+ ||++|.|+.||+|+|++.+...   
T Consensus        17 s~ksl~v~vk~~~~~V~hv~lnRPs-k~Nal~~~~w~E~~~cf~~l~~dpdcr~-iilsg~GKhFcaGIDl~~~~~~~~~   94 (292)
T KOG1681|consen   17 SYKSLEVSVKSAQPFVYHVQLNRPS-KLNALNKVFWREFKECFDSLDRDPDCRA-IILSGAGKHFCAGIDLNDMASDRIL   94 (292)
T ss_pred             ccceeeeeecCCCCeEEEEEecCcc-hhhhhhHHHHHHHHHHHHhhccCCCceE-EEEecCCcceecccCcchhhhhhcc
Confidence            355444443   4569999999998 8999999999999999999999999996 5569999999999998766432   


Q ss_pred             ---CC-----HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhh
Q psy9060         135 ---KT-----ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRI  206 (366)
Q Consensus       135 ---~~-----~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~  206 (366)
                         .+     ...++.++..+++.+..|++||||+|++|||+|+|||+.|.-|||+|++++++                 
T Consensus        95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDA-----------------  157 (292)
T KOG1681|consen   95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDA-----------------  157 (292)
T ss_pred             ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccc-----------------
Confidence               01     12345566778899999999999999999999999999999999999999998                 


Q ss_pred             hcccccccccccchhccCCCChhHHhHHhhhcC-HHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHH
Q psy9060         207 VVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA-LPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEY  285 (366)
Q Consensus       207 ~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G-~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~  285 (366)
                             .|..-|+.+|+..+.|..+|||..+| ...++++.+|++.|+|.||++.|||.+|+|+            .+.
T Consensus       158 -------ffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~d------------k~~  218 (292)
T KOG1681|consen  158 -------FFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPD------------KEE  218 (292)
T ss_pred             -------eeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCC------------HHH
Confidence                   99999999999999999999999999 7899999999999999999999999999987            378


Q ss_pred             HHHHHHHHHHHHhcCc-ccccccC
Q psy9060         286 LEEVAVNTASQLASGK-LKINRIK  308 (366)
Q Consensus       286 l~~~a~~~a~~la~~~-~~~~~~~  308 (366)
                      |+..+..+|..|+.++ ..+..+|
T Consensus       219 ll~~~l~mA~~Ia~KSpvaVqgTK  242 (292)
T KOG1681|consen  219 LLNGALPMAELIASKSPVAVQGTK  242 (292)
T ss_pred             HHhhhHHHHHHhccCCceeeechH
Confidence            9999999999999885 4454454

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.1e-36  Score=311.17  Aligned_cols=207  Identities=29%  Similarity=0.466  Sum_probs=174.3

Q ss_pred             cCCcceeEEEeCCEEEEEecCCC---------CCCCCCCHHHHHHHHHHHHHhh-cCCCccEEEEEeeC-CCcEEcCCCc
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPG---------VKVNSLNSEVMSEIQSILRRIQ-SDSSIRSAVIISGK-PGCFIAGADI  128 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~---------~~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~~g~-g~~F~aG~Dl  128 (366)
                      ..++++.++++++|++|+||||+         .+.|++|.+|+.+|.++++.++ +|++|++||| +|. ++.||+|+|+
T Consensus        12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVL-tg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVV-TSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEE-ecCCCCCCCCccCH
Confidence            45788999999999999999763         1579999999999999999999 7899997665 564 5899999999


Q ss_pred             chhhhcCCHHH--HHHHH-HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhh
Q psy9060         129 SMLAACKTADQ--VKQIS-KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYR  205 (366)
Q Consensus       129 ~~~~~~~~~~~--~~~~~-~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~  205 (366)
                      +++........  ..... .....+...+.++||||||+|||+|+|||++|+++|||||+++++++              
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a--------------  156 (550)
T PRK08184         91 FMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSS--------------  156 (550)
T ss_pred             HhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCc--------------
Confidence            98754221111  11111 11122455778899999999999999999999999999999987545              


Q ss_pred             hhcccccccccccchh-ccCCCChhHHhHHh--hhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhh
Q psy9060         206 IVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERT  282 (366)
Q Consensus       206 ~~~~~~~~~~~~pe~~-~Gl~p~~gg~~~l~--r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~  282 (366)
                              +|++||++ +|++|++|++++++  +++|..+|++|+++|+.++++||+++||||+++|+            
T Consensus       157 --------~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~------------  216 (550)
T PRK08184        157 --------AVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKP------------  216 (550)
T ss_pred             --------EEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH------------
Confidence                    89999997 99999999999998  78999999999999999999999999999999997            


Q ss_pred             HHHHHHHHHHHHHHHhcCcc
Q psy9060         283 MEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       283 ~~~l~~~a~~~a~~la~~~~  302 (366)
                       +++.+.+.+++++|+..+.
T Consensus       217 -d~l~~~a~~~A~~ia~~~~  235 (550)
T PRK08184        217 -SKFDAKVAERAAELAAASD  235 (550)
T ss_pred             -HHHHHHHHHHHHHHHhCCC
Confidence             6789999999999998754

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=1.5e-33  Score=251.17  Aligned_cols=203  Identities=18%  Similarity=0.353  Sum_probs=176.3

Q ss_pred             cCCcceeEEEe-CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEee---CCCcEEcCCCcchhhhc-
Q psy9060          60 NSTKHFKEKAV-GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG---KPGCFIAGADISMLAAC-  134 (366)
Q Consensus        60 ~~~~~i~~~~~-~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g---~g~~F~aG~Dl~~~~~~-  134 (366)
                      ..++.|.|++. ++|+.|++|||+ .+|++.+..+.||.+++..+..|++|.+ ||+||   ++.+||+|+|-+-.... 
T Consensus        15 ~~y~dI~Y~~~~~giakItinRPe-vrNAfrP~TV~Em~~Af~~Ar~d~~vGv-i~lTG~~~G~~AFCsGGDQ~vRg~~~   92 (282)
T COG0447          15 EGYEDITYEKSVDGIAKITINRPE-VRNAFRPKTVDEMIDAFADARDDPNVGV-ILLTGNGDGDKAFCSGGDQKVRGDSG   92 (282)
T ss_pred             CCcceeEEeeccCceEEEEecChh-hhccCCCccHHHHHHHHHhhhcCCCccE-EEEecCCCCCeeeecCCCceecccCC
Confidence            35788999997 999999999999 7999999999999999999999999985 55676   45789999997654331 


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccc
Q psy9060         135 --KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKK  212 (366)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~  212 (366)
                        .+++....  -...++-+.|+.+||||||.|+|+++|||-.|-+.||+.||++++                       
T Consensus        93 gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA-----------------------  147 (282)
T COG0447          93 GYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNA-----------------------  147 (282)
T ss_pred             CccCCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcc-----------------------
Confidence              11111111  123455667889999999999999999999999999999999987                       


Q ss_pred             ccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHH
Q psy9060         213 TGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN  292 (366)
Q Consensus       213 ~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~  292 (366)
                       +|+..-.++|.+-++.|+..|.|.+|..+|+|+.+.++.++|+||+++||||.|||.             ++|+++..+
T Consensus       148 -~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-------------~~LE~e~v~  213 (282)
T COG0447         148 -IFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPH-------------ADLEKETVQ  213 (282)
T ss_pred             -hhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccH-------------HHHHHHHHH
Confidence             899999999999999999999999999999999999999999999999999999997             789999999


Q ss_pred             HHHHHhcCccc
Q psy9060         293 TASQLASGKLK  303 (366)
Q Consensus       293 ~a~~la~~~~~  303 (366)
                      |++++..+++.
T Consensus       214 W~~E~l~kSP~  224 (282)
T COG0447         214 WAREMLAKSPT  224 (282)
T ss_pred             HHHHHHhcChH
Confidence            99998877543

>KOG0016|consensus

Probab=99.98  E-value=2.7e-31  Score=243.22  Aligned_cols=204  Identities=24%  Similarity=0.348  Sum_probs=179.1

Q ss_pred             CCcceeEEEeCCEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH--
Q psy9060          61 STKHFKEKAVGDVLVVTLD-SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA--  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itln-rp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~--  137 (366)
                      .+..+.+++++++.+|.+| ||. +.|+++.+++.++..+++.+..|+++. +++++|.|+.||+|.|++.+....+.  
T Consensus         5 ~~~~~vv~~~~g~~~I~~~~~Pk-k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~~d~   82 (266)
T KOG0016|consen    5 RYREIVVTRENGPFFIALNIRPK-KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALDDDA   82 (266)
T ss_pred             cccceEEEecCCcEEEEecCCCc-ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCCCcc
Confidence            4567888899999999999 998 899999999999999999999999885 67789999999999999988654321  


Q ss_pred             -HHHH---HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccc
Q psy9060         138 -DQVK---QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKT  213 (366)
Q Consensus       138 -~~~~---~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~  213 (366)
                       ....   .....+..+.+.+.++|||+||.|||+++|-|..+.-.||+++|+|.+                        
T Consensus        83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka------------------------  138 (266)
T KOG0016|consen   83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKA------------------------  138 (266)
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccce------------------------
Confidence             1111   222333447888899999999999999999999999999999999876                        


Q ss_pred             cccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHH
Q psy9060         214 GLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT  293 (366)
Q Consensus       214 ~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~  293 (366)
                      +|..|+.++|+.|.+++++.+|+++|...|.||++.|++++|+||.+.|||++++++             +.+.+.+..-
T Consensus       139 ~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~-------------~tf~~~v~~~  205 (266)
T KOG0016|consen  139 WFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPA-------------ETFNEEVLKK  205 (266)
T ss_pred             EEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcCh-------------HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999997             6788888888


Q ss_pred             HHHHhcCccc
Q psy9060         294 ASQLASGKLK  303 (366)
Q Consensus       294 a~~la~~~~~  303 (366)
                      +++++..++.
T Consensus       206 ikq~s~l~p~  215 (266)
T KOG0016|consen  206 IKQYSKLSPE  215 (266)
T ss_pred             HHHHhcCCHH
Confidence            8888876543

>KOG1682|consensus

Probab=99.96  E-value=6.7e-29  Score=219.58  Aligned_cols=201  Identities=21%  Similarity=0.346  Sum_probs=177.9

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI  143 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~  143 (366)
                      ...++.+++|-.|+|++|. ++|.++.+|+.+|.+.+.....+.++|+| |++..|+.||+|.||+++......+...+.
T Consensus        33 ~g~~~~~~gvR~i~l~npK-k~NtLSLaM~~~Lq~~ll~d~d~~dlr~v-iita~GkifSaGH~LKELt~e~g~d~haev  110 (287)
T KOG1682|consen   33 LGLVKEHNGVREITLNNPK-KLNTLSLAMMCALQDALLKDKDNLDLRCV-IITAQGKIFSAGHNLKELTNEPGSDIHAEV  110 (287)
T ss_pred             ccccccccceeeeeecCcc-ccchhhHHHHHHHHHHHhhcccccceeEE-EEecCCccccccccHHHhhcCccchHHHHH
Confidence            3445556899999999999 89999999999999999999888999975 558999999999999999876555566677


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      +....+++..|+++|.|+|+-|||.+..+|+.|...||++||++++                        +|..|.+.+|
T Consensus       111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~S------------------------kF~tPG~~vG  166 (287)
T KOG1682|consen  111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNS------------------------KFSTPGAGVG  166 (287)
T ss_pred             HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCc------------------------cccCCCCcee
Confidence            7888899999999999999999999999999999999999999987                        8999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  303 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~  303 (366)
                      ++-...| .-|.|.+....+.+|++||.+++++||+..|||.++||.             ++|..++.+.+++|...+..
T Consensus       167 lFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~-------------~el~~e~~~i~~~i~~~sra  232 (287)
T KOG1682|consen  167 LFCSTPG-VALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPA-------------EELDKEIEEITNAIKAKSRA  232 (287)
T ss_pred             eEecCcc-hhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCH-------------HHHHHHHHHHHHHHhhhHHH
Confidence            9765544 367888999999999999999999999999999999997             78888899999888776554


Q ss_pred             c
Q psy9060         304 I  304 (366)
Q Consensus       304 ~  304 (366)
                      +
T Consensus       233 v  233 (287)
T KOG1682|consen  233 V  233 (287)
T ss_pred             H
Confidence            3

>KOG1684|consensus

Probab=99.94  E-value=4.3e-26  Score=217.01  Aligned_cols=182  Identities=26%  Similarity=0.398  Sum_probs=163.0

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhh---cCCHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA---CKTADQ  139 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~---~~~~~~  139 (366)
                      ..|.++..+...+||||||. ..|++|.+|...+...+...+.++.+++||+-++.+++||+|+|++....   ....+.
T Consensus        38 ~~VL~e~~~~~r~itLNRPK-aLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~  116 (401)
T KOG1684|consen   38 DQVLVEGKGCARVITLNRPK-ALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE  116 (401)
T ss_pred             CceEEecCCceeEEEecCch-hhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence            56888888999999999999 79999999999999999999999999976665455899999999985543   233345


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...++.....+...|.+..||.||.++|..+|||+.|+...-||||+++.                        .|.+||
T Consensus       117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT------------------------~~AmPE  172 (401)
T KOG1684|consen  117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERT------------------------VFAMPE  172 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccc------------------------eecccc
Confidence            66677777788888999999999999999999999999999999999965                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ..+|++|+.|++++++|+-| ....++-+||+++++.+|+..||.++-|+.
T Consensus       173 t~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S  222 (401)
T KOG1684|consen  173 TGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPS  222 (401)
T ss_pred             cccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccch
Confidence            99999999999999999988 778889999999999999999999999987

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.78  E-value=3.8e-18  Score=153.99  Aligned_cols=145  Identities=17%  Similarity=0.268  Sum_probs=114.3

Q ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHH
Q psy9060          74 LVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSE  153 (366)
Q Consensus        74 a~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  153 (366)
                      ++|.++.      .++......+.+.++.+.+|+ ++.++|.-.+++     +++.                ....++..
T Consensus         2 ~vv~i~g------~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSpG-----G~v~----------------~~~~i~~~   53 (187)
T cd07020           2 YVLEING------AITPATADYLERAIDQAEEGG-ADALIIELDTPG-----GLLD----------------STREIVQA   53 (187)
T ss_pred             EEEEEee------EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECCC-----CCHH----------------HHHHHHHH
Confidence            5666753      356667788999999998765 677666534332     2221                12355667


Q ss_pred             HHcCCCCEEEEec---cccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh--
Q psy9060         154 IESSPKPIVAAIS---GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA--  228 (366)
Q Consensus       154 i~~~~kP~Iaav~---G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~--  228 (366)
                      |..+|||||++|+   |+|.|||+.++++||++|+++++                        +|+.+++..+..+..  
T Consensus        54 l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a------------------------~~g~~~~~~~~~~~~~~  109 (187)
T cd07020          54 ILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGT------------------------NIGAAHPVAIGGGGGSD  109 (187)
T ss_pred             HHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCC------------------------cEEeccccccCCCCcch
Confidence            7889999999999   99999999999999999999987                        899999885544432  


Q ss_pred             ------------hHHhHHhhhcCH--HHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         229 ------------GGTQRLPKLTAL--PNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       229 ------------gg~~~l~r~~G~--~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                                  +....+++..|.  .++.+++++|+.|+++||+++||||+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~  165 (187)
T cd07020         110 PVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAAD  165 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCC
Confidence                        245578888997  689999999999999999999999999987

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.77  E-value=2.6e-18  Score=153.65  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060          92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG  171 (366)
Q Consensus        92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G  171 (366)
                      ...+|.++++.+.+|++|++||| ++    +|.|.|+...             ..+.+++..+.+++|||||+|+|.|.|
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl-~~----~~~gg~~~~~-------------~~~~~~i~~~~~~~kpVia~v~G~a~g   84 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVL-RV----NSPGGSVTAS-------------EVIRAELAAARAAGKPVVASGGGNAAS   84 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEE-Ee----eCCCcCHHHH-------------HHHHHHHHHHHhCCCCEEEEECCchhH
Confidence            46799999999999999998766 44    6888886532             123456778888999999999999999


Q ss_pred             hHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh--------HHhhhcC--HH
Q psy9060         172 GGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ--------RLPKLTA--LP  241 (366)
Q Consensus       172 gG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~--------~l~r~~G--~~  241 (366)
                      +|+.|+++||++++++++                        +|+++.+..+..+......        .+++..|  ..
T Consensus        85 ~g~~la~a~D~i~a~~~a------------------------~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~  140 (177)
T cd07014          85 GGYWISTPANYIVANPST------------------------LVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPE  140 (177)
T ss_pred             HHHHHHHhCCEEEECCCC------------------------eEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999987                        7888877665322211111        3444445  77


Q ss_pred             HHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         242 NVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       242 ~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ...+++..|+.++++||++.||||++.+.
T Consensus       141 ~~~~~l~~g~~~~a~~A~~~GLVD~v~~~  169 (177)
T cd07014         141 QQIDKIAQGGVWTGQDAKANGLVDSLGSF  169 (177)
T ss_pred             HhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence            88899999999999999999999999975

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.59  E-value=4.2e-15  Score=136.62  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecccc
Q psy9060          90 SEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSC  169 (366)
Q Consensus        90 ~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a  169 (366)
                      ...+.+|.++|+.+.+|++|+++|| +    .||.|+|+..+.             .+.+.+..+..++||+||+++|.|
T Consensus        20 ~~~~~~l~~~l~~a~~d~~v~~ivL-~----~~s~Gg~~~~~~-------------~~~~~l~~~~~~~kpVia~v~g~a   81 (211)
T cd07019          20 NVGGDTTAAQIRDARLDPKVKAIVL-R----VNSPGGSVTASE-------------VIRAELAAARAAGKPVVVSAGGAA   81 (211)
T ss_pred             ccCHHHHHHHHHHHhhCCCceEEEE-E----EcCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCee
Confidence            3457999999999999999998776 3    799999986542             223456778889999999999999


Q ss_pred             chhHHHHHhhccEEEEecCCcc
Q psy9060         170 LGGGLEVALACHYRIAVKDKKT  191 (366)
Q Consensus       170 ~GgG~elalacD~ria~~~ak~  191 (366)
                      .|+|+.|+++||.+++++++..
T Consensus        82 ~s~gy~la~~aD~i~a~~~a~~  103 (211)
T cd07019          82 ASGGYWISTPANYIVANPSTLT  103 (211)
T ss_pred             hhHHHHHHHhCCEEEEcCCCEE
Confidence            9999999999999999998744

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.55  E-value=1e-14  Score=152.37  Aligned_cols=182  Identities=21%  Similarity=0.300  Sum_probs=127.3

Q ss_pred             EeCCEEEEEecCCCC-CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC--CCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060          69 AVGDVLVVTLDSPGV-KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK--PGCFIAGADISMLAACKTADQVKQISK  145 (366)
Q Consensus        69 ~~~~Va~Itlnrp~~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~--g~~F~aG~Dl~~~~~~~~~~~~~~~~~  145 (366)
                      .+++|++|.++.+=. ..|..+....+.+.+.++.+.+|++|++||+.-.+  |..|++                    +
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as--------------------e  365 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS--------------------E  365 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH--------------------H
Confidence            357899999986531 12333333456788899999999999998876322  222332                    1


Q ss_pred             HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccC-CCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG-LGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                      .+.+.+.++...+||||+.++|.|.+||+.++++||.++|++.+.+| +|+.-..+             .+.-.-.++|+
T Consensus       366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~-------------~~~~~l~klGi  432 (584)
T TIGR00705       366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLP-------------TFENSLDRIGV  432 (584)
T ss_pred             HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEcc-------------CHHHHHHhcCC
Confidence            22345555677889999999999999999999999999999987554 33211110             01111157888


Q ss_pred             CCChhHHhHHhh----------------------------hcCHHH-----HHHHHhcCCCcCHHHHHHcCCcceecCCC
Q psy9060         225 LPGAGGTQRLPK----------------------------LTALPN-----VLDMTLTGKTLKADKAKKMGIVDQLVEPL  271 (366)
Q Consensus       225 ~p~~gg~~~l~r----------------------------~~G~~~-----a~~l~ltG~~~~a~eA~~~GLVd~vv~~~  271 (366)
                      .|....+..+..                            .++..+     +.+.+.+|+.++++||+++||||++-.  
T Consensus       433 ~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~--  510 (584)
T TIGR00705       433 HVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG--  510 (584)
T ss_pred             ceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC--
Confidence            887666655443                            555555     778899999999999999999999953  


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         272 GPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       272 ~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                                    + +.|.+.|++++..
T Consensus       511 --------------~-~~Ai~~a~~la~~  524 (584)
T TIGR00705       511 --------------L-DEAVAKAAKLAHC  524 (584)
T ss_pred             --------------H-HHHHHHHHHHcCC
Confidence                          2 5567777787776

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.48  E-value=4.2e-13  Score=117.80  Aligned_cols=135  Identities=19%  Similarity=0.291  Sum_probs=99.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      +++.+.++|.+.++.++.|++++++||. .    .|.|+|+..                +..+...+..++||||+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~-~----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLE-V----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEE-E----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence            4557789999999999999999987763 2    456665432                234566677788999999999


Q ss_pred             ccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH-------------hHH
Q psy9060         168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-------------QRL  234 (366)
Q Consensus       168 ~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-------------~~l  234 (366)
                      .|.++|+.|+++||.|++.+++                        .|++..+..+.....+-.             ..+
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a------------------------~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  122 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGT------------------------RVGSHGPIGGYGGNGNPTAQEADQRIILYFIARF  122 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCC------------------------EEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887                        677766654433211000             111


Q ss_pred             h------hhcCHHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060         235 P------KLTALPNVLDMTLTGKTLKADKAKKMGIVDQL  267 (366)
Q Consensus       235 ~------r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~v  267 (366)
                      .      |.+......+++..|..++++||+++||||++
T Consensus       123 ~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         123 ISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             HHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence            1      11233446678889999999999999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.47  E-value=2.1e-13  Score=119.86  Aligned_cols=129  Identities=18%  Similarity=0.199  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccc
Q psy9060          91 EVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCL  170 (366)
Q Consensus        91 ~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~  170 (366)
                      .+...+.+.++.+..+..+.  +.+...|+...                      ....+.+.|..++||+|+.++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i~--l~inspGG~~~----------------------~~~~i~~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDIT--VRINSPGGDVF----------------------AGLAIYNALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCEE--EEEECCCCCHH----------------------HHHHHHHHHHhcCCCEEEEEcchHH
Confidence            35678888888888775443  33344443221                      1245677788899999999999999


Q ss_pred             hhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhH---------------HhHHh
Q psy9060         171 GGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG---------------TQRLP  235 (366)
Q Consensus       171 GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg---------------~~~l~  235 (366)
                      |+|+.++++||+|++++++                        .|++.....|..+....               ...+.
T Consensus        71 s~g~~ia~a~d~~~~~~~a------------------------~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~  126 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNA------------------------MLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYA  126 (160)
T ss_pred             hHHHHHHhcCCeEEECCCc------------------------EEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887                        78887766555443322               23367


Q ss_pred             hhcC--HHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060         236 KLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQL  267 (366)
Q Consensus       236 r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~v  267 (366)
                      +..|  .....+++..+..++++||+++||||+|
T Consensus       127 ~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016         127 EKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             HHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            7788  6677778888888999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.44  E-value=1.4e-12  Score=120.06  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             CCC-CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060          85 VNS-LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA  163 (366)
Q Consensus        85 ~Na-l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  163 (366)
                      .|. ++..++.+|.++++.+.+|++|++||+. .    +|.|.++...             ..+.+.+..+.. +|||||
T Consensus        18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~-~----~s~gg~~~~~-------------~~l~~~l~~~~~-~KpViA   78 (214)
T cd07022          18 LEASSGLTSYEGIAAAIRAALADPDVRAIVLD-I----DSPGGEVAGV-------------FELADAIRAARA-GKPIVA   78 (214)
T ss_pred             ccCCCCcccHHHHHHHHHHHhhCCCCcEEEEE-E----eCCCCcHHHH-------------HHHHHHHHHHhc-CCCEEE
Confidence            454 4567899999999999999999987763 2    4455554221             122333444444 699999


Q ss_pred             EeccccchhHHHHHhhccEEEEecCCcc
Q psy9060         164 AISGSCLGGGLEVALACHYRIAVKDKKT  191 (366)
Q Consensus       164 av~G~a~GgG~elalacD~ria~~~ak~  191 (366)
                      +++|.|.|+|+.++++||++++++++..
T Consensus        79 ~v~g~a~s~gy~lA~~aD~i~a~~~a~~  106 (214)
T cd07022          79 FVNGLAASAAYWIASAADRIVVTPTAGV  106 (214)
T ss_pred             EECCchhhHHHHHHhcCCEEEEcCCCeE
Confidence            9999999999999999999999998754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.41  E-value=2.5e-12  Score=117.81  Aligned_cols=98  Identities=17%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++|.++.+=.+ .  ...+..+|.++++.+..|++++++|+ .+    +|.|+|+...             ..+.+.+.
T Consensus         2 v~vi~i~g~i~~-~--~~~~~~~l~~~l~~a~~d~~i~~ivl-~~----~s~Gg~~~~~-------------~~i~~~i~   60 (208)
T cd07023           2 IAVIDIEGTISD-G--GGIGADSLIEQLRKAREDDSVKAVVL-RI----NSPGGSVVAS-------------EEIYREIR   60 (208)
T ss_pred             EEEEEEEEEEcC-C--CCCCHHHHHHHHHHHHhCCCCcEEEE-EE----ECCCCCHHHH-------------HHHHHHHH
Confidence            566766543100 0  25688999999999999999998766 44    4778887541             12345667


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCcc
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT  191 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~  191 (366)
                      .+..++||+||+++|.|.|+|+.++++||++++++++..
T Consensus        61 ~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~   99 (208)
T cd07023          61 RLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTIT   99 (208)
T ss_pred             HHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeE
Confidence            788899999999999999999999999999999998743

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.29  E-value=5.3e-11  Score=109.11  Aligned_cols=91  Identities=20%  Similarity=0.345  Sum_probs=68.6

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++|+++.+=   .    ....+|.++|+.+.+|++++++||. .    .|.|+|+..                ..++..
T Consensus         2 v~vi~i~g~i---~----~s~~~l~~~l~~a~~d~~i~~vvl~-~----~s~Gg~~~~----------------~~~l~~   53 (207)
T TIGR00706         2 IAILPVSGAI---A----VSPEDFDKKIKRIKDDKSIKALLLR-I----NSPGGTVVA----------------SEEIYE   53 (207)
T ss_pred             EEEEEEEEEE---e----cCHHHHHHHHHHHhhCCCccEEEEE-e----cCCCCCHHH----------------HHHHHH
Confidence            6777776532   1    2357899999999999999987764 3    256666532                133445


Q ss_pred             HHHcCC--CCEEEEeccccchhHHHHHhhccEEEEecCCcc
Q psy9060         153 EIESSP--KPIVAAISGSCLGGGLEVALACHYRIAVKDKKT  191 (366)
Q Consensus       153 ~i~~~~--kP~Iaav~G~a~GgG~elalacD~ria~~~ak~  191 (366)
                      .|.+++  ||+|+.++|.|.|+|+.++++||.+++++++..
T Consensus        54 ~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~v   94 (207)
T TIGR00706        54 KLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTIT   94 (207)
T ss_pred             HHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeE
Confidence            555665  999999999999999999999999999998743

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.21  E-value=3.8e-10  Score=101.10  Aligned_cols=141  Identities=21%  Similarity=0.319  Sum_probs=98.1

Q ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHH
Q psy9060          74 LVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSE  153 (366)
Q Consensus        74 a~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  153 (366)
                      .+|.++.      .+++...+.+.++|+.+.+++ ++.+|+.--.+     |+++                .....+...
T Consensus         2 ~vi~i~g------~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v----------------~~~~~I~~~   53 (178)
T cd07021           2 YVIPIEG------EIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRV----------------DSALEIVDL   53 (178)
T ss_pred             EEEEEee------EECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCH----------------HHHHHHHHH
Confidence            4566643      356677888999999998886 66665543222     2221                123567788


Q ss_pred             HHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH--
Q psy9060         154 IESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT--  231 (366)
Q Consensus       154 i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~--  231 (366)
                      |.++++|+|+.|+|.|.++|+.++++||++++++++                        .||.+.+    ++..|+.  
T Consensus        54 l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a------------------------~iG~~~~----v~~~~~~~~  105 (178)
T cd07021          54 ILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGA------------------------TIGAAEP----IPGDGNGAA  105 (178)
T ss_pred             HHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCC------------------------eEecCee----EcCCCccch
Confidence            889999999999999999999999999999999887                        6777643    3322220  


Q ss_pred             ------hH------Hhhhc--CHHHHHHHHhcC-------------CCcCHHHHHHcCCcceecCC
Q psy9060         232 ------QR------LPKLT--ALPNVLDMTLTG-------------KTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       232 ------~~------l~r~~--G~~~a~~l~ltG-------------~~~~a~eA~~~GLVd~vv~~  270 (366)
                            ..      +...-  ....+..|+...             -.++++||++.|++|.+.++
T Consensus       106 ~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         106 DEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence                  01      11111  233445566654             37999999999999999976

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.16  E-value=1.5e-10  Score=107.33  Aligned_cols=84  Identities=19%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccc
Q psy9060          89 NSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGS  168 (366)
Q Consensus        89 ~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~  168 (366)
                      +...+.++.+.|+++..|++|++||+ ...+..| ++.++.++                .+.+..+...+|||||.++| 
T Consensus        27 ~~~~~~~l~~~l~~a~~d~~ik~vvL-~~~s~gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~~-   87 (222)
T cd07018          27 SELSLRDLLEALEKAAEDDRIKGIVL-DLDGLSG-GLAKLEEL----------------RQALERFRASGKPVIAYADG-   87 (222)
T ss_pred             CCccHHHHHHHHHHHhcCCCeEEEEE-ECCCCCC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeCC-
Confidence            44568899999999999999998766 5555555 54444332                34555666689999999998 


Q ss_pred             cchhHHHHHhhccEEEEecCCcc
Q psy9060         169 CLGGGLEVALACHYRIAVKDKKT  191 (366)
Q Consensus       169 a~GgG~elalacD~ria~~~ak~  191 (366)
                      |.+||+.++++||.+++.+.+..
T Consensus        88 ~~sggy~lasaad~I~a~p~~~v  110 (222)
T cd07018          88 YSQGQYYLASAADEIYLNPSGSV  110 (222)
T ss_pred             CCchhhhhhhhCCEEEECCCceE
Confidence            88999999999999999997744

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK10949 protease 4; Provisional

Probab=98.87  E-value=2e-08  Score=105.60  Aligned_cols=165  Identities=19%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             eCCEEEEEecCC----CCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSP----GVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISK  145 (366)
Q Consensus        70 ~~~Va~Itlnrp----~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  145 (366)
                      .+.|++|.++..    +...+.++.   +.+.+.|+.+.+|++||+||+.-.+++.     .         ....    +
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpGG-----s---------~~as----e  383 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPGG-----S---------VTAS----E  383 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCCC-----c---------HHHH----H
Confidence            467888876532    112233443   5778889999999999998876444331     0         0111    2


Q ss_pred             HHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccC-CCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         146 SGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG-LGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       146 ~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                      .+.+.+.+++...||||+.+.|.|..||+.++.+||.++|.+.+-+| +|+.-..+             .+.-.--++|+
T Consensus       384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~-------------~~~~ll~klGV  450 (618)
T PRK10949        384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVIN-------------TVENSLDSIGV  450 (618)
T ss_pred             HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEcc-------------CHHHHHHhcCC
Confidence            23344555666789999999999999999999999999999987666 55433322             11111112333


Q ss_pred             CCChhHH-----------------hHHh-----------------hhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060         225 LPGAGGT-----------------QRLP-----------------KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE  269 (366)
Q Consensus       225 ~p~~gg~-----------------~~l~-----------------r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~  269 (366)
                      -.....+                 ..+.                 |-+..... +-+..|+.+++++|++.||||++-.
T Consensus       451 ~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~  528 (618)
T PRK10949        451 HTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGD  528 (618)
T ss_pred             ceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCC
Confidence            2211111                 1111                 22233222 3467999999999999999999975

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.79  E-value=4.4e-09  Score=113.11  Aligned_cols=61  Identities=66%  Similarity=1.108  Sum_probs=57.2

Q ss_pred             CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhcccC
Q psy9060           1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS   61 (366)
Q Consensus         1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~~   61 (366)
                      +++||||||++|+++|+.+...++++||+.|+++|.+|+.||++++|+|+||.++.+++..
T Consensus       267 ~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~  327 (737)
T TIGR02441       267 QTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK  327 (737)
T ss_pred             hccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence            4688999999999999999999999999999999999999999999999999999887653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.71  E-value=4.6e-07  Score=80.71  Aligned_cols=138  Identities=16%  Similarity=0.263  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          87 SLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        87 al~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      .+++.+.+.|.+.++.+++|+ ++.+++.-..+     |+++.                ....+...|...++||++.|+
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~~-~~~i~l~inSP-----GG~v~----------------~~~~I~~~i~~~~~pvv~~v~   66 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQDN-AEAIIIELDTP-----GGRAD----------------AAGNIVQRIQQSKIPVIIYVY   66 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcCC-CCeEEEEEECC-----CCCHH----------------HHHHHHHHHHhcCcCEEEEEe
Confidence            366777888899999888764 67665543322     22221                123556667778999999999


Q ss_pred             ---cccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCC----h---h-HHhH--
Q psy9060         167 ---GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG----A---G-GTQR--  233 (366)
Q Consensus       167 ---G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~----~---g-g~~~--  233 (366)
                         |.|.++|..++++||.+++.+++                        .+|.-.+..|.-+.    .   - -...  
T Consensus        67 p~g~~AaSag~~I~~a~~~i~m~p~s------------------------~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~  122 (172)
T cd07015          67 PPGASAASAGTYIALGSHLIAMAPGT------------------------SIGACRPILGYSQNGSIIEAPPKITNYFIA  122 (172)
T ss_pred             cCCCeehhHHHHHHHhcCceEECCCC------------------------EEEEccccccCCCCCccccchHHHHHHHHH
Confidence               99999999999999999999987                        45554442221110    0   0 0111  


Q ss_pred             ----HhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         234 ----LPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       234 ----l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                          +.+.-|  ...+..++.....++++||++.|+||.+++.
T Consensus       123 ~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         123 YIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence                112233  4566778888999999999999999999986

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.60  E-value=3.8e-08  Score=105.62  Aligned_cols=61  Identities=33%  Similarity=0.572  Sum_probs=57.2

Q ss_pred             CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhcccC
Q psy9060           1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS   61 (366)
Q Consensus         1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~~   61 (366)
                      ++++|||||++++++++++.+.++++||..|+++|.+|..||++++++++||.++++++..
T Consensus       243 ~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~  303 (714)
T TIGR02437       243 VAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKA  303 (714)
T ss_pred             hhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCC
Confidence            3689999999999999999999999999999999999999999999999999999887653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.58  E-value=7.9e-07  Score=78.47  Aligned_cols=135  Identities=17%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+.+++.+.|..++.++.++.++|.--++     |+++                .....+++.|..+++|+++.+.|
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSp-----GG~v----------------~~~~~i~~~i~~~~~~v~~~~~g   67 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSP-----GGDV----------------FAGMAIYDTIKFIKADVVTIIDG   67 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECC-----CCcH----------------HHHHHHHHHHHhcCCCceEEEEe
Confidence            45678889999999999887777665543222     2221                12346677777889999999999


Q ss_pred             ccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh-------------
Q psy9060         168 SCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ-------------  232 (366)
Q Consensus       168 ~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~-------------  232 (366)
                      .|.++|..++++||  .|++.+++                        .+.+....-|......-..             
T Consensus        68 ~aaS~~~~i~~a~~~g~r~~~p~a------------------------~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~  123 (162)
T cd07013          68 LAASMGSVIAMAGAKGKRFILPNA------------------------MMMIHQPWGGTLGDATDMRIYADLLLKVEGNL  123 (162)
T ss_pred             ehhhHHHHHHHcCCCCcEEEecCE------------------------EEEEccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  57777655                        4443222111100000000             


Q ss_pred             --HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060         233 --RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQL  267 (366)
Q Consensus       233 --~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~v  267 (366)
                        .+.+..|  .....+++-.+.-++++||+++||||++
T Consensus       124 ~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         124 VSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence              0111122  3344456666777799999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.43  E-value=2.3e-06  Score=78.08  Aligned_cols=130  Identities=17%  Similarity=0.245  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      ++..+...+...+..++.++..+.+.+ +...|+      |.                ..+..++..|...+.|+++.+.
T Consensus        40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG------~v----------------~~g~~I~d~i~~~~~~v~t~~~   97 (200)
T PRK00277         40 VEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG------SV----------------TAGLAIYDTMQFIKPDVSTICI   97 (200)
T ss_pred             ECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC------cH----------------HHHHHHHHHHHhcCCCEEEEEE
Confidence            567788888888888876543333333 233232      21                1234566677777889999999


Q ss_pred             cccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH-------------
Q psy9060         167 GSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-------------  231 (366)
Q Consensus       167 G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-------------  231 (366)
                      |.|.++|..++++++  .|++.+++                               ++++.+..+++             
T Consensus        98 G~aaS~a~~I~~ag~~~~r~~~p~s-------------------------------~imih~p~~~~~G~a~di~~~a~~  146 (200)
T PRK00277         98 GQAASMGAFLLAAGAKGKRFALPNS-------------------------------RIMIHQPLGGFQGQATDIEIHARE  146 (200)
T ss_pred             eEeccHHHHHHhcCCCCCEEEcCCc-------------------------------eEEeccCcccccCChhHHHHHHHH
Confidence            999999999998743  45555544                               44444322221             


Q ss_pred             ---------hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         232 ---------QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       232 ---------~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                               ..+....|  .....+++-.+.-++|+||++.||||+|+..
T Consensus       147 l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        147 ILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence                     11222233  3444566667788999999999999999975

>KOG1683|consensus

Probab=98.38  E-value=1.8e-07  Score=90.99  Aligned_cols=172  Identities=16%  Similarity=0.107  Sum_probs=132.8

Q ss_pred             CEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHH
Q psy9060          72 DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQIL  151 (366)
Q Consensus        72 ~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~  151 (366)
                      ++..++++ |+  .|..|.++..++..-++.+..+..+++....+-..+.|++|.|..+..-.. ........-.+++++
T Consensus        66 ~~~~~dmv-ie--av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~-h~fspa~~m~LlEii  141 (380)
T KOG1683|consen   66 GFANADMV-IE--AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGM-HFFSPAHWMQLLEII  141 (380)
T ss_pred             ccccccee-cc--chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccc-cccCHHHHHHHHHHH
Confidence            78888888 54  699999999999999999999999998665555567899999998865421 112222334567888


Q ss_pred             HHHHcCCCCEEEEeccccchhH--HHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh
Q psy9060         152 SEIESSPKPIVAAISGSCLGGG--LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG  229 (366)
Q Consensus       152 ~~i~~~~kP~Iaav~G~a~GgG--~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g  229 (366)
                      ....+++.|+.+++||++--|+  +-++.+|+|++.......                      ..+..+..+++.-+..
T Consensus       142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y----------------------~~~~~~~l~e~g~~p~  199 (380)
T KOG1683|consen  142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPY----------------------TIGLNELLLEIGADPW  199 (380)
T ss_pred             HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHH----------------------HHHHHHHHHHcCCCHH
Confidence            9999999999999999998888  788999999998854321                      4578888887433333


Q ss_pred             HHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060         230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE  269 (366)
Q Consensus       230 g~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~  269 (366)
                      -...+...+|...+-.-+-.|.-++..||++-|+++++.|
T Consensus       200 ~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~  239 (380)
T KOG1683|consen  200 LIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGP  239 (380)
T ss_pred             HHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccc
Confidence            3344444567666666677899999999999999999987

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.30  E-value=1e-05  Score=71.95  Aligned_cols=135  Identities=20%  Similarity=0.278  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++.....++...+..+..++..+.+++.-.++     |+|+                .....+.+.|...+.|++..+.|
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSp-----GG~v----------------~~~~~i~~~l~~~~~~v~t~~~g   76 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSP-----GGSV----------------TAGLAIYDTMQYIKPPVSTICLG   76 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEECC-----CCCH----------------HHHHHHHHHHHhcCCCEEEEEEe
Confidence            45677888999998888776555544433222     2221                12245566677778999999999


Q ss_pred             ccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH--------------
Q psy9060         168 SCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT--------------  231 (366)
Q Consensus       168 ~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~--------------  231 (366)
                      .|.++|.-+++++|  .|++.+++                        .|.+-+...+..-...-.              
T Consensus        77 ~aaS~~~~i~~~g~~~~r~~~~~a------------------------~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~  132 (171)
T cd07017          77 LAASMGALLLAAGTKGKRYALPNS------------------------RIMIHQPLGGAGGQASDIEIQAKEILRLRRRL  132 (171)
T ss_pred             EehhHHHHHHHcCCCCCEEEccch------------------------HHHHcCCCccCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  79999877                        555554433321111000              


Q ss_pred             -hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCccee
Q psy9060         232 -QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQL  267 (366)
Q Consensus       232 -~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~v  267 (366)
                       ..+....|  .....+++..+.-++++||+++||||+|
T Consensus       133 ~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         133 NEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence             00111122  2344567778888999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.25  E-value=7.5e-06  Score=79.89  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=63.6

Q ss_pred             eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQ  149 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~  149 (366)
                      .+.|++|.++.+= ..+ -...+.+++...++.+..+   .+||+.--+++.-..|.++                  ...
T Consensus        89 ~~~v~VI~~~G~I-~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSpGG~v~~s~~------------------a~~  145 (330)
T PRK11778         89 KPRLFVLDFKGDI-DAS-EVESLREEITAILAVAKPG---DEVLLRLESPGGVVHGYGL------------------AAS  145 (330)
T ss_pred             CCeEEEEEEEEEE-CCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCCCCchhHHHH------------------HHH
Confidence            3679999988642 111 1223456666666555443   3455543333222121111                  112


Q ss_pred             HHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccC
Q psy9060         150 ILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG  192 (366)
Q Consensus       150 ~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~  192 (366)
                      .+.++.+..||+++.+.+.|..||+.++.+||.++|.+.+-+|
T Consensus       146 ~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vG  188 (330)
T PRK11778        146 QLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVG  188 (330)
T ss_pred             HHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEE
Confidence            2455667889999999999999999999999999999987665

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.22  E-value=7.7e-06  Score=79.84  Aligned_cols=81  Identities=26%  Similarity=0.427  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchh
Q psy9060          93 MSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGG  172 (366)
Q Consensus        93 ~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~Gg  172 (366)
                      .+...+.++.+..|+++++|||+--+|+.-..+              .    +.+.+.+.++..-. ||++.|++.|..|
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a--------------s----~~i~~~l~~l~~~~-PV~v~v~~~AASG  142 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRINSPGGSVVA--------------S----ELIARALKRLRAKK-PVVVSVGGYAASG  142 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEECcCCchhH--------------H----HHHHHHHHHHhhcC-CEEEEECCeecch
Confidence            567788899999999999988764443321110              1    12234444444444 9999999999999


Q ss_pred             HHHHHhhccEEEEecCCccC
Q psy9060         173 GLEVALACHYRIAVKDKKTG  192 (366)
Q Consensus       173 G~elalacD~ria~~~ak~~  192 (366)
                      |+.+++++|.+||++.+-+|
T Consensus       143 GY~IA~aAd~I~a~p~si~G  162 (317)
T COG0616         143 GYYIALAADKIVADPSSITG  162 (317)
T ss_pred             hhhhhccCCEEEecCCceee
Confidence            99999999999999998776

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.18  E-value=3.4e-05  Score=70.81  Aligned_cols=135  Identities=20%  Similarity=0.288  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEE-eeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVII-SGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      ++..+..++...|..++.++..+.+++. ...|+      ++                ..+..++..|..++.|++..+.
T Consensus        44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v----------------~~g~~I~d~i~~~~~~v~t~~~  101 (207)
T PRK12553         44 VDDASANDVMAQLLVLESIDPDRDITLYINSPGG------SV----------------TAGDAIYDTIQFIRPDVQTVCT  101 (207)
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCC------cH----------------HHHHHHHHHHHhcCCCcEEEEE
Confidence            6778889999999998865433433333 33332      21                1234667777888889999999


Q ss_pred             cccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc-cCCCChhHH------------
Q psy9060         167 GSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML-GLLPGAGGT------------  231 (366)
Q Consensus       167 G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~-Gl~p~~gg~------------  231 (366)
                      |.|.+.|.-++++||  .|++.+++                        .|.+-.... |..  .|-.            
T Consensus       102 G~aaSaa~lI~~ag~~~~R~~~p~s------------------------~imiH~p~~~~~~--~G~a~d~~~~~~~l~~  155 (207)
T PRK12553        102 GQAASAGAVLLAAGTPGKRFALPNA------------------------RILIHQPSLGGGI--RGQASDLEIQAREILR  155 (207)
T ss_pred             eehhhHHHHHHHcCCcCcEEECCCc------------------------hhhhcCccccCCC--ccCHHHHHHHHHHHHH
Confidence            999999999999999  58999877                        444443321 111  1111            


Q ss_pred             ------hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         232 ------QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       232 ------~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                            ..+....|  .....+++-.+.-++|+||+++||||+|++.
T Consensus       156 ~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        156 MRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence                  11222233  3445567778899999999999999999975

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.14  E-value=0.00037  Score=67.72  Aligned_cols=139  Identities=14%  Similarity=0.148  Sum_probs=91.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ...++++-.+...+.++.+++.. += +|.+-..+++++ |.+-          +.....+.+...+..+.....|+|++
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~-lP-IItlvDTpGA~~-G~~A----------E~~G~~~aiar~l~~~a~~~VP~IsV  198 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFG-LP-ILTFIDTPGAWA-GVKA----------EKLGQGEAIAVNLREMFSFEVPIICT  198 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCc-CHHH----------HHHhHHHHHHHHHHHHHcCCCCEEEE
Confidence            35677888888888888887643 33 333334444443 3221          11122345566667778889999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL  244 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~  244 (366)
                      |-|.|.|||......||++++.+++                        .+       +++++-|....|-+  ...+|.
T Consensus       199 ViGeggsGGAlal~~aD~V~m~e~a------------------------~~-------sVisPEg~a~Il~~--d~~~a~  245 (322)
T CHL00198        199 IIGEGGSGGALGIGIGDSIMMLEYA------------------------VY-------TVATPEACAAILWK--DSKKSL  245 (322)
T ss_pred             EeCcccHHHHHhhhcCCeEEEeCCe------------------------EE-------EecCHHHHHHHHhc--chhhHH
Confidence            9999988886555569999999886                        33       33343444444433  233433


Q ss_pred             HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         245 DMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       245 ~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      + +...-.++|++.+++|+||+|+|.
T Consensus       246 ~-aA~~~~ita~dL~~~giiD~ii~E  270 (322)
T CHL00198        246 D-AAEALKITSEDLKVLGIIDEIIPE  270 (322)
T ss_pred             H-HHHHcCCCHHHHHhCCCCeEeccC
Confidence            3 334567999999999999999985

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.13  E-value=0.00043  Score=67.16  Aligned_cols=139  Identities=13%  Similarity=0.169  Sum_probs=89.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ...++++-.+...+.++.+++-. += +|.+-..+++++ |.+-          +.....+.+.+.+..+.....|+|++
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f~-iP-vVtlvDTpGa~~-g~~a----------E~~G~~~aia~~l~a~s~~~VP~IsV  195 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERFK-MP-IITFIDTPGAYP-GIGA----------EERGQSEAIARNLREMARLGVPVICT  195 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEECCCCCC-CHHH----------HHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            35677888888888888887543 34 343444444433 3221          11123455667777788899999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL  244 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~  244 (366)
                      |-|.|.|||......||++++.+++                        .+       +++++-|....|-+-  ..++.
T Consensus       196 ViGeggsGGAla~~~aD~v~m~~~a------------------------~~-------sVisPEg~a~Il~kd--~~~a~  242 (316)
T TIGR00513       196 VIGEGGSGGALAIGVGDKVNMLEYS------------------------TY-------SVISPEGCAAILWKD--ASKAP  242 (316)
T ss_pred             EecccccHHHhhhccCCEEEEecCc------------------------eE-------EecCHHHHHHHhccc--hhhHH
Confidence            9999987777555569999999886                        22       444444444444331  12222


Q ss_pred             HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         245 DMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       245 ~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +..- -..+++.++++.|+||+|+|.
T Consensus       243 ~aae-~~~~ta~~l~~~G~iD~II~e  267 (316)
T TIGR00513       243 KAAE-AMKITAPDLKELGLIDSIIPE  267 (316)
T ss_pred             HHHH-HccCCHHHHHHCCCCeEeccC
Confidence            2222 356789999999999999985

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.09  E-value=0.00046  Score=67.04  Aligned_cols=139  Identities=14%  Similarity=0.204  Sum_probs=93.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ...++++-.+...+.++.+++-. +- +|.+-..++++. |.+-.          .....+.+...+..+.....|+|++
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f~-lP-IVtlvDTpGa~~-G~~aE----------~~G~~~aia~~l~~~a~~~VP~IsV  195 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKFG-LP-IITFIDTPGAYP-GIGAE----------ERGQSEAIARNLREMARLKVPIICT  195 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCCCC-CHHHH----------hccHHHHHHHHHHHHhCCCCCEEEE
Confidence            45677888888888888776543 44 344444444443 33211          1123455667788888999999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL  244 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~  244 (366)
                      |-|.|.|||......||++++.+++                        .       ++++++-|....|-+-  ..++.
T Consensus       196 IiGeg~sGGAla~~~aD~v~m~~~A------------------------~-------~svisPEg~a~Il~~~--~~~a~  242 (319)
T PRK05724        196 VIGEGGSGGALAIGVGDRVLMLEYS------------------------T-------YSVISPEGCASILWKD--ASKAP  242 (319)
T ss_pred             EeCCccHHHHHHHhccCeeeeecCc------------------------e-------EeecCHHHHHHHHhcC--chhHH
Confidence            9999988887555569999999876                        2       3455555555555442  23333


Q ss_pred             HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         245 DMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       245 ~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +..- --.+++.++++.|+||+|++.
T Consensus       243 ~aae-~~~ita~~l~~~g~iD~II~E  267 (319)
T PRK05724        243 EAAE-AMKITAQDLKELGIIDEIIPE  267 (319)
T ss_pred             HHHH-HcCCCHHHHHHCCCceEeccC
Confidence            3333 556899999999999999975

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.09  E-value=0.00025  Score=67.12  Aligned_cols=138  Identities=16%  Similarity=0.203  Sum_probs=91.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ...++++-.+...+.++.+.+.. += +|.+...++++. |.+-          +.....+.+...+..+...+.|+|+.
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~-lP-vV~lvDtpGa~~-g~~a----------E~~G~~~~ia~~~~~~s~~~VP~IsV  142 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFG-RP-VVTFINTAGAYP-GVGA----------EERGQGEAIARNLMEMSDLKVPIIAI  142 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCC-CHhH----------HhccHHHHHHHHHHHHhCCCCCEEEE
Confidence            35677888888888888887643 34 344444444442 3221          11123455667777788899999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcC-HHHH
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA-LPNV  243 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G-~~~a  243 (366)
                      |-|.|.|||......||++++.+++                        .+       +++++-|....+-+--. ...+
T Consensus       143 I~G~~~gGgA~a~~~~D~v~m~~~a------------------------~~-------~v~~pe~~a~il~~~~~~a~~a  191 (256)
T PRK12319        143 IIGEGGSGGALALAVADQVWMLENT------------------------MY-------AVLSPEGFASILWKDGSRATEA  191 (256)
T ss_pred             EeCCcCcHHHHHhhcCCEEEEecCc------------------------eE-------EEcCHHHHHHHHhcCcccHHHH
Confidence            9999999988888899999999986                        22       33333334434332111 1222


Q ss_pred             HHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         244 LDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       244 ~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      .+.+    .+++.++++.|+||+|+++
T Consensus       192 a~~~----~~~a~~l~~~g~iD~ii~e  214 (256)
T PRK12319        192 AELM----KITAGELLEMGVVDKVIPE  214 (256)
T ss_pred             HHHc----CCCHHHHHHCCCCcEecCC
Confidence            3333    7799999999999999986

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.07  E-value=0.00057  Score=68.23  Aligned_cols=137  Identities=17%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060          86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI  165 (366)
Q Consensus        86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav  165 (366)
                      ..++++-.+...+.++.++... += ||.+-..++++ .|.+-          +.....+.+...+..+....+|+|++|
T Consensus       200 G~~~peGyRKAlR~mklAekf~-lP-IVtLVDTpGA~-pG~~A----------Ee~Gqa~aIAr~l~ams~l~VPiISVV  266 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFG-FP-ILTFVDTPGAY-AGIKA----------EELGQGEAIAFNLREMFGLRVPIIATV  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcC-CCHHH----------HHHhHHHHHHHHHHHHhcCCCCEEEEE
Confidence            4577888888888888887643 33 33333444443 22221          112234556677778889999999999


Q ss_pred             ccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhh-hcCHHHHH
Q psy9060         166 SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK-LTALPNVL  244 (366)
Q Consensus       166 ~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r-~~G~~~a~  244 (366)
                      -|.+.+||......||++++.+++                        .+       +++++-|....|-+ ..-...|.
T Consensus       267 iGeGgSGGAlalg~aD~VlMle~A------------------------~y-------sVisPEgaAsILwkd~~~A~eAA  315 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMMENA------------------------VY-------YVASPEACAAILWKSAAAAPKAA  315 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEecCC------------------------EE-------EecCHHHHHHHHhccccchHHHH
Confidence            999966665544568999999886                        22       33333333333332 11122233


Q ss_pred             HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         245 DMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       245 ~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +    .-.++|.++++.|+||+|++.
T Consensus       316 e----alkitA~dL~~~GiID~II~E  337 (431)
T PLN03230        316 E----ALRITAAELVKLGVVDEIVPE  337 (431)
T ss_pred             H----HcCCCHHHHHhCCCCeEeccC
Confidence            3    338999999999999999985

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.06  E-value=0.0009  Score=70.80  Aligned_cols=139  Identities=11%  Similarity=0.085  Sum_probs=92.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ...+++.-.+...+.++.+.... += +|.+-..++++. |.+-.+          ....+.+...+..+....+|+|++
T Consensus       220 fG~~~peGyRKAlRlmkLAekfg-LP-IVtLVDTpGA~p-G~~AEe----------~Gq~~aIArnl~amasl~VP~ISV  286 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHG-FP-IVTFIDTPGAYA-DLKSEE----------LGQGEAIAHNLRTMFGLKVPIVSI  286 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCC-CchhHH----------HhHHHHHHHHHHHHhCCCCCEEEE
Confidence            45677777888888888776543 33 333334444443 322111          123455667777888999999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL  244 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~  244 (366)
                      |-|.|.|||......||+++|.+++                        .       ++++++-|....|-+  ...+|.
T Consensus       287 ViGeggSGGAlA~g~aD~VlMle~A------------------------~-------~sVisPEgaAsILwk--d~~~A~  333 (762)
T PLN03229        287 VIGEGGSGGALAIGCANKLLMLENA------------------------V-------FYVASPEACAAILWK--SAKAAP  333 (762)
T ss_pred             EeCCcchHHHHHhhcCCEEEEecCC------------------------e-------EEecCHHHHHHHHhc--CcccHH
Confidence            9999988888777779999999876                        2       244444444444433  222333


Q ss_pred             HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         245 DMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       245 ~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      + +...-.++|++.+++|+||+|+|.
T Consensus       334 e-AAe~lkiTa~dL~~lGiiD~IIpE  358 (762)
T PLN03229        334 K-AAEKLRITAQELCRLQIADGIIPE  358 (762)
T ss_pred             H-HHHHcCCCHHHHHhCCCCeeeccC
Confidence            2 334567999999999999999985

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.03  E-value=6.6e-05  Score=68.39  Aligned_cols=137  Identities=21%  Similarity=0.212  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      ++..+...+.+.|..++..+..+.+++ +...|+      |+                ..+..++..|...+.||+..+.
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v----------------~ag~aI~d~i~~~~~~V~t~v~   89 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEGG------DI----------------DAGFAIFNMIRFVKPKVFTIGV   89 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CH----------------HHHHHHHHHHHhCCCCEEEEEE
Confidence            556777888888877765222232333 333332      21                1234677777888999999999


Q ss_pred             cccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH-------------
Q psy9060         167 GSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-------------  231 (366)
Q Consensus       167 G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-------------  231 (366)
                      |.|.+.|.-++++||-  |++.+++                        .+.+-...-+....+.-.             
T Consensus        90 G~AaSaaslIl~ag~~~~R~~~p~s------------------------~imiHqP~~~~~G~a~di~~~a~~l~~~~~~  145 (197)
T PRK14512         90 GLVASAAALIFLAAKKESRFSLPNA------------------------RYLLHQPLSGFKGVATDIEIYANELNKVKSE  145 (197)
T ss_pred             eeeHhHHHHHHhcCCcCceeECCCC------------------------cEEEEcCccccccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999985  8888876                        333322211111111000             


Q ss_pred             --hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         232 --QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       232 --~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                        ..+....|  ......++-....++|+||+++||||+|++.
T Consensus       146 i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        146 LNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             HHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence              00111223  2344566667778999999999999999976

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.94  E-value=3.1e-05  Score=69.32  Aligned_cols=137  Identities=20%  Similarity=0.263  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHHhhc-CCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          88 LNSEVMSEIQSILRRIQS-DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~-d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      ++..+...+.+.|..++. ++.-...|.+...|      +|+                ..+..+.+.|..++.|++..+.
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG------G~v----------------~~g~~i~~~i~~~~~~v~t~~~   82 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSPG------GDV----------------DAGLAIYDAIRSSKAPVTTVVL   82 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE------BCH----------------HHHHHHHHHHHHSSSEEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC------Ccc----------------HHHHHHHHHHHhcCCCeEEEEe
Confidence            677888888888777743 22212223333333      332                1235677888889999999999


Q ss_pred             cccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh------------
Q psy9060         167 GSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------  232 (366)
Q Consensus       167 G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------------  232 (366)
                      |.|.+.|.-++++|+.  |++.+++                        .|.+-+...+......-..            
T Consensus        83 G~aaSaa~~i~~ag~~~~R~~~~~s------------------------~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~  138 (182)
T PF00574_consen   83 GLAASAATLIFLAGDKGKRYASPNS------------------------RFMIHQPSTGSGGNASELREQAKELEKLNER  138 (182)
T ss_dssp             EEEETHHHHHHHTSSTTTEEE-TT-------------------------EEEES-CEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             CccccceehhhhcCCcCceeeeecC------------------------EEEeecceeecccccchhHHHHHHHHHHHHH
Confidence            9999999999999999  8999987                        5555555433221111100            


Q ss_pred             ---HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 ---RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 ---~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                         .+....|  .....+++-...-++++||+++||||+|+.+
T Consensus       139 ~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  139 IANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             HHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             HHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence               1111122  2333455555566899999999999999863

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.92  E-value=1.1e-05  Score=86.83  Aligned_cols=60  Identities=48%  Similarity=0.746  Sum_probs=56.4

Q ss_pred             CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060           1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN   60 (366)
Q Consensus         1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~   60 (366)
                      +++|+||||.+++++++++...++++++..|++.|..+..|++++++++.|+.++..++.
T Consensus       235 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~  294 (699)
T TIGR02440       235 KTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKE  294 (699)
T ss_pred             hcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence            367899999999999999999999999999999999999999999999999999888664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.86  E-value=0.00029  Score=63.87  Aligned_cols=137  Identities=18%  Similarity=0.227  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+...+...+..+..++..+.+++.-.++     |+|+                ..+..++..|...+.|+...+.|
T Consensus        35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp-----GG~v----------------~~g~~I~d~l~~~~~~v~t~~~G   93 (191)
T TIGR00493        35 VNDSVANLIVAQLLFLEAEDPEKDIYLYINSP-----GGSI----------------TAGLAIYDTMQFIKPDVSTICIG   93 (191)
T ss_pred             EChHHHHHHHHHHHHhhccCCCCCEEEEEECC-----CCCH----------------HHHHHHHHHHHhcCCCEEEEEEE
Confidence            45666777878777777655444444432222     2332                12345666677777788888899


Q ss_pred             ccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH--------------
Q psy9060         168 SCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT--------------  231 (366)
Q Consensus       168 ~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~--------------  231 (366)
                      .|.+.|.-+++++|  .|++.+++                        .|.+-+..-|......-.              
T Consensus        94 ~AaSaaslI~~aG~~~~r~~~p~s------------------------~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~  149 (191)
T TIGR00493        94 QAASMGAFLLSAGAKGKRFSLPNS------------------------RIMIHQPLGGAQGQASDIEIQANEILRLKGLL  149 (191)
T ss_pred             eeccHHHHHHhcCCCCcEEecCCc------------------------eEEEecCcccccCCcchhHHHHHHHHHHHHHH
Confidence            99999998888765  69999887                        455433322211111000              


Q ss_pred             -hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060         232 -QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVE  269 (366)
Q Consensus       232 -~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~  269 (366)
                       ..+....|  .....+++-.+.-++|+||+++||||+|+.
T Consensus       150 ~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       150 NDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             HHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence             01222233  244556777788899999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.82  E-value=0.00037  Score=65.89  Aligned_cols=96  Identities=17%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      .+.++.+..+++.++++....+..+- +++-| .|      +++                ....++.+.+.+.+.|+++.
T Consensus        69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~T-pG------G~v----------------~AA~~I~~~l~~~~~~v~v~  124 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIHT-PG------GLV----------------DAAEQIARALREHPAKVTVI  124 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhcCCCCceE-EEEEC-CC------CcH----------------HHHHHHHHHHHhCCCCEEEE
Confidence            46688888888888888887766553 33322 22      221                11235566777889999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA  228 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~  228 (366)
                      |+..|..+|.-++|+||-+++.+.+                        .+|--...+|-.|..
T Consensus       125 VP~~A~SAGTlIALaADeIvM~p~a------------------------~LGpiDPqi~~~pA~  164 (285)
T PF01972_consen  125 VPHYAMSAGTLIALAADEIVMGPGA------------------------VLGPIDPQIGQYPAA  164 (285)
T ss_pred             ECcccccHHHHHHHhCCeEEECCCC------------------------ccCCCCccccCCChH
Confidence            9999999999999999999999987                        666666666666643

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.82  E-value=0.00047  Score=62.96  Aligned_cols=136  Identities=15%  Similarity=0.184  Sum_probs=89.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      ++.++..++...+-.++.++..+-+.+ +...|+...                      .+..++..+...+.||...+.
T Consensus        39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~----------------------~g~aIyd~m~~~~~~V~Tv~~   96 (200)
T CHL00028         39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVI----------------------SGLAIYDTMQFVKPDVHTICL   96 (200)
T ss_pred             ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchh----------------------hHHHHHHHHHhcCCCEEEEEE
Confidence            778888888888888774333233332 333332211                      234577778888999999999


Q ss_pred             cccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh------------
Q psy9060         167 GSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------  232 (366)
Q Consensus       167 G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------------  232 (366)
                      |.|.+.|.-|++++|  .|++.+++                        +|.+-....|..-|- .+.            
T Consensus        97 G~AaS~aslIl~aG~kg~R~~~p~s------------------------~imiHqp~~~~~~G~-a~di~~~a~~l~~~~  151 (200)
T CHL00028         97 GLAASMASFILAGGEITKRLAFPHA------------------------RVMIHQPASSFYEGQ-ASEFVLEAEELLKLR  151 (200)
T ss_pred             EehHHHHHHHHhCCCCCCEEecCCC------------------------eEEEecCccCcCCCC-HHHHHHHHHHHHHHH
Confidence            999999999999998  68898877                        455544333311111 111            


Q ss_pred             -----HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 -----RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 -----~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                           .+....|  .....+++-...-++|+||+++||||+|+.+
T Consensus       152 ~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        152 ETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence                 1111223  2333456666777999999999999999975

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.75  E-value=0.00035  Score=64.69  Aligned_cols=135  Identities=16%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHhhc---CCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          88 LNSEVMSEIQSILRRIQS---DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~---d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ++..+...+...|-.++.   +.++.  |.+...|+...+                      +..++..|...+.||...
T Consensus        63 Idd~~a~~i~aqLl~L~~~~~~~~I~--lyINSpGGsv~a----------------------GlaIyd~m~~~~~~V~tv  118 (221)
T PRK14514         63 IDDYTANTIQAQLLYLDSVDPGKDIS--IYINSPGGSVYA----------------------GLGIYDTMQFISSDVATI  118 (221)
T ss_pred             EcHHHHHHHHHHHHHHhccCCCCCEE--EEEECCCcchhh----------------------HHHHHHHHHhcCCCEEEE
Confidence            566677777776655553   33444  223333433222                      245667777888899999


Q ss_pred             eccccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh----------
Q psy9060         165 ISGSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ----------  232 (366)
Q Consensus       165 v~G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~----------  232 (366)
                      +.|.|.+.|.-|++++|.  |++.+++                        .+.+-...-|.-..+.-..          
T Consensus       119 ~~G~AAS~AslIl~aG~~gkR~~~pna------------------------~iMiHqP~~~~~G~a~di~i~a~el~~~~  174 (221)
T PRK14514        119 CTGMAASMASVLLVAGTKGKRSALPHS------------------------RVMIHQPLGGAQGQASDIEITAREIQKLK  174 (221)
T ss_pred             EEEEehhHHHHHHhcCCCCceeeCCCC------------------------EEEeccCCcccCCCcchHHHHHHHHHHHH
Confidence            999999999999999996  8888876                        4444333222111100000          


Q ss_pred             -----HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 -----RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 -----~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                           .+....|  .....+++-...-++|+||+++||||+|+..
T Consensus       175 ~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        175 KELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence                 0112223  2334456667778999999999999999864

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.68  E-value=6.2e-05  Score=65.75  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             HcCCCCEEEEeccccchhHHHHHhhccEEEEecCCcc
Q psy9060         155 ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT  191 (366)
Q Consensus       155 ~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~  191 (366)
                      .+..|||||.++|.+..+++.++.+||-+++.+.+..
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~v   39 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSV   39 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EE
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEE
Confidence            4678999999999999999999999999999987644

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.68  E-value=0.00079  Score=61.30  Aligned_cols=137  Identities=15%  Similarity=0.201  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEE-EeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVI-ISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl-~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      ++..+..++...|..++.++..+-+.+ +...|+...                      .+..++..|...+.||...+.
T Consensus        34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~----------------------~g~aIyd~m~~~~~~V~t~~~   91 (196)
T PRK12551         34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVY----------------------DGLGIFDTMQHVKPDVHTVCV   91 (196)
T ss_pred             ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchh----------------------hHHHHHHHHHhcCCCEEEEEE
Confidence            677888888888888875332232332 333332221                      124667777788889999999


Q ss_pred             cccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh------------
Q psy9060         167 GSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------------  232 (366)
Q Consensus       167 G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------------  232 (366)
                      |.|.+.|.-+++++|-  |++.+++                        ++.+-...-|..-...-..            
T Consensus        92 G~AaS~AslIl~aG~~~~R~~~p~a------------------------~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~  147 (196)
T PRK12551         92 GLAASMGAFLLCAGAKGKRSSLQHS------------------------RIMIHQPLGGARGQASDIRIQADEILFLKER  147 (196)
T ss_pred             EEehhHHHHHHhCCCCCceecCCCC------------------------EEEEecCCcccCCCcchHHHHHHHHHHHHHH
Confidence            9999999999999884  7777776                        4444333212110000000            


Q ss_pred             ---HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 ---RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 ---~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                         .+....|  .....+++-.-.-++|+||++.||||+|++.
T Consensus       148 ~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        148 LNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             HHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence               0112223  2233456666677999999999999999975

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0015  Score=65.46  Aligned_cols=149  Identities=17%  Similarity=0.285  Sum_probs=104.5

Q ss_pred             eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQ  149 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~  149 (366)
                      ++.|.++.++      +.+++.+.+.+.+.++.++++.. ..+|+.-..++.+                     .+..++
T Consensus        25 ~~~v~vi~i~------g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~   76 (436)
T COG1030          25 EKKVYVIEID------GAIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQ   76 (436)
T ss_pred             CCeEEEEEec------CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHH
Confidence            4568888885      45899999999999999998763 3344433333322                     134578


Q ss_pred             HHHHHHcCCCCEEEEe---ccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC--
Q psy9060         150 ILSEIESSPKPIVAAI---SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL--  224 (366)
Q Consensus       150 ~~~~i~~~~kP~Iaav---~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl--  224 (366)
                      +.+.+.+.+.|++..|   .+.|..+|..++++||+..|.+..                        .+|-...-.+-  
T Consensus        77 iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT------------------------~iGaa~Pi~~~g~  132 (436)
T COG1030          77 IVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGT------------------------NIGAATPIAGGGT  132 (436)
T ss_pred             HHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCC------------------------cccccceecCCCC
Confidence            8999999999988888   346999999999999999999875                        44443222111  


Q ss_pred             -CCChh-HHhHHh------hhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         225 -LPGAG-GTQRLP------KLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       225 -~p~~g-g~~~l~------r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                       .+... ....+.      +.-  ....|.+++.....++++||++.|++|-+..+
T Consensus       133 ~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~  188 (436)
T COG1030         133 SAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD  188 (436)
T ss_pred             CccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence             11111 111111      122  34567789999999999999999999999875

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.65  E-value=0.012  Score=56.31  Aligned_cols=147  Identities=24%  Similarity=0.316  Sum_probs=85.1

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCC----CccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS----SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQ  148 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~----~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  148 (366)
                      |.++-.+.-- ..-+++...-+.+..+++.+.+|.    .+- +|++..+++     +.+.+  ..   .....+.+. .
T Consensus        61 v~v~a~D~t~-~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSgG-----aRlqE--g~---~~L~~~a~i-~  127 (274)
T TIGR03133        61 VVVAAQEGRF-QGGSVGEVHGAKIVGALRLAIEDNRKGQPTA-VVLLLDTGG-----VRLQE--AN---AGLIAIAEI-M  127 (274)
T ss_pred             EEEEEECCCc-cCcCCCHHHHHHHHHHHHHHHhhhhccCCCC-EEEEEcCCC-----cChhh--hH---HHHHHHHHH-H
Confidence            5555554433 456788778899999999887621    123 344433333     33322  10   111111111 1


Q ss_pred             HHHHHHHcCCCCEEEEeccc--cchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc--cchhccC
Q psy9060         149 QILSEIESSPKPIVAAISGS--CLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL--PEVMLGL  224 (366)
Q Consensus       149 ~~~~~i~~~~kP~Iaav~G~--a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~--pe~~~Gl  224 (366)
                      ..+.++... .|+|+.|.|+  |+||+...+..||++|+++++                        ++++  |++    
T Consensus       128 ~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a------------------------~i~~aGP~V----  178 (274)
T TIGR03133       128 RAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEG------------------------RLGLSGPEV----  178 (274)
T ss_pred             HHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCc------------------------EEeccCHHH----
Confidence            122233333 8999999999  899999999999999999876                        3443  222    


Q ss_pred             CCChhHHhHHhhhcCH--HHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         225 LPGAGGTQRLPKLTAL--PNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       225 ~p~~gg~~~l~r~~G~--~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                               .-...|.  -...+.-+.-+.+.++.....|++|.++++
T Consensus       179 ---------Ie~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~d  217 (274)
T TIGR03133       179 ---------IEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVED  217 (274)
T ss_pred             ---------HHHhcCCCccCHHHhcccccccchHhHhhcccceEEeCC
Confidence                     1111221  122233334445666677889999999986

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.60  E-value=0.0033  Score=58.88  Aligned_cols=147  Identities=13%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHHHHh-hcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHH
Q psy9060          76 VTLDSPGVKVNSLNSEVMSEIQSILRRI-QSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEI  154 (366)
Q Consensus        76 Itlnrp~~~~Nal~~~~~~eL~~al~~~-~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (366)
                      |.=|+|.  . .++.+--..+...+... +++..+- +|.+-..++ |-.|.          ..+...+.+.+.+++..+
T Consensus        36 vIa~~~~--~-~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDtpG-~~~g~----------~aE~~G~~~a~A~l~~a~  100 (238)
T TIGR03134        36 VIGVVPD--A-EVGLDEALALAQAVLDVIEADDKRP-IVVLVDTPS-QAYGR----------REELLGINQALAHLAKAL  100 (238)
T ss_pred             EEEECCC--C-cCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeCCC-CCCCH----------HHHHHHHHHHHHHHHHHH
Confidence            3344454  2 57766666667767664 4445555 344445443 33332          233333445556555555


Q ss_pred             H---cCCCCEEEEeccccchhHHHH-HhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhH
Q psy9060         155 E---SSPKPIVAAISGSCLGGGLEV-ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG  230 (366)
Q Consensus       155 ~---~~~kP~Iaav~G~a~GgG~el-alacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg  230 (366)
                      .   +.+.|+|+.|-|.+.|||+.- .+.+|.++|-+++                               .++.++.-+.
T Consensus       101 a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A-------------------------------~i~vm~~e~a  149 (238)
T TIGR03134       101 ALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGA-------------------------------MVHVMDLESM  149 (238)
T ss_pred             HHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCc-------------------------------EEEecCHHHH
Confidence            5   455999999999999988644 4447777766554                               4566665555


Q ss_pred             HhHHhhhcCHHHHHHHHhcC--CCcCHHHHHHcCCcceecCC
Q psy9060         231 TQRLPKLTALPNVLDMTLTG--KTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       231 ~~~l~r~~G~~~a~~l~ltG--~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ...+-+-.  ..+.++.-+-  ...+++.+.++|+||+|+++
T Consensus       150 a~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~  189 (238)
T TIGR03134       150 ARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHALLDV  189 (238)
T ss_pred             HHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccEEeCC
Confidence            55444432  3344443332  23577889999999999986

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.55  E-value=0.0011  Score=60.56  Aligned_cols=134  Identities=18%  Similarity=0.271  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHHhhcC---CCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060          87 SLNSEVMSEIQSILRRIQSD---SSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA  163 (366)
Q Consensus        87 al~~~~~~eL~~al~~~~~d---~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  163 (366)
                      .++.++-..+...+-.++.+   .+|.  |.+...|+...                      .+..++..|...+-||..
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~--l~INSpGG~v~----------------------~GlaIyd~m~~~~~~V~T   90 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQ--MYINCPGGEVY----------------------AGLAIYDTMRYIKAPVST   90 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEE--EEEECCCCchh----------------------hHHHHHHHHHhcCCCEEE
Confidence            36777777777777666653   2344  23333333211                      234677778888889999


Q ss_pred             EeccccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhH--------
Q psy9060         164 AISGSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR--------  233 (366)
Q Consensus       164 av~G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~--------  233 (366)
                      .+.|.|.+.|.-+++++|-  |++.+++                        ++-+-....|..  +.....        
T Consensus        91 i~~G~AaS~As~il~aG~kgkR~~~pna------------------------~iMIHqp~~~~~--G~a~di~~~a~el~  144 (201)
T PRK14513         91 ICVGIAMSMGSVLLMAGDKGKRMALPNS------------------------RIMIHQGSAGFR--GNTPDLEVQAKEVL  144 (201)
T ss_pred             EEEeeehhhHHHHHhcCCCCcEEecCCe------------------------EEEEecCCCCCC--CCHHHHHHHHHHHH
Confidence            9999999999999999995  8898887                        444433332321  111111        


Q ss_pred             ---------HhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         234 ---------LPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       234 ---------l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                               +.+..|  ...-.+++-...-++|+||+++||||+|+++
T Consensus       145 ~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~  192 (201)
T PRK14513        145 FLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP  192 (201)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence                     112223  2333456666677899999999999999975

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.45  E-value=0.015  Score=56.20  Aligned_cols=102  Identities=19%  Similarity=0.195  Sum_probs=64.6

Q ss_pred             EEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHH
Q psy9060          75 VVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEI  154 (366)
Q Consensus        75 ~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i  154 (366)
                      .|..|.+.-...+++...-+.+..+++.+.+.. +-. |++...|+     +.+.+  .   .....++. .....+.++
T Consensus       124 ~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPl-V~l~dsgG-----armqE--g---i~sL~~~a-k~~~a~~~~  190 (292)
T PRK05654        124 VLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPL-VIFSASGG-----ARMQE--G---LLSLMQMA-KTSAALKRL  190 (292)
T ss_pred             EEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCE-EEEEcCCC-----cchhh--h---hhHHHhHH-HHHHHHHHH
Confidence            334444443568899999999999999987764 453 44444443     22211  0   01111111 122334445


Q ss_pred             HcCCCCEEEEeccccchhHHH-HHhhccEEEEecCC
Q psy9060         155 ESSPKPIVAAISGSCLGGGLE-VALACHYRIAVKDK  189 (366)
Q Consensus       155 ~~~~kP~Iaav~G~a~GgG~e-lalacD~ria~~~a  189 (366)
                      .....|.|+++.|+|+||+.. .++.+|++||.+++
T Consensus       191 ~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A  226 (292)
T PRK05654        191 SEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKA  226 (292)
T ss_pred             HcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCc
Confidence            566799999999999999754 47779999998866

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.43  E-value=0.00015  Score=78.29  Aligned_cols=60  Identities=62%  Similarity=0.917  Sum_probs=55.7

Q ss_pred             CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060           1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN   60 (366)
Q Consensus         1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~   60 (366)
                      +++|+||||.++.++++.+...++++++..|++.|.++..|++++++++.|+.++..++.
T Consensus       240 ~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~  299 (708)
T PRK11154        240 KTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKD  299 (708)
T ss_pred             hcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999999999999999999999999999998887654

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.39  E-value=0.00098  Score=70.33  Aligned_cols=80  Identities=21%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060          92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG  171 (366)
Q Consensus        92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G  171 (366)
                      .+.++.++|+.+.+|+.|++||+.-...    .|.++.         ..    +.+.+.+..+....|||||..++.+ -
T Consensus        77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~---------~~----~ei~~ai~~fk~sgKpVvA~~~~~~-s  138 (584)
T TIGR00705        77 SLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSP---------HL----VEIGSALSEFKDSGKPVYAYGTNYS-Q  138 (584)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHH---------HH----HHHHHHHHHHHhcCCeEEEEEcccc-c
Confidence            4679999999999999999987743221    132221         11    1234445566677999999887765 6


Q ss_pred             hHHHHHhhccEEEEecCC
Q psy9060         172 GGLEVALACHYRIAVKDK  189 (366)
Q Consensus       172 gG~elalacD~ria~~~a  189 (366)
                      +|+.|+.+||.+++.+..
T Consensus       139 ~~YylAs~AD~I~~~p~G  156 (584)
T TIGR00705       139 GQYYLASFADEIILNPMG  156 (584)
T ss_pred             hhhhhhhhCCEEEECCCc
Confidence            789999999999999864

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.30  E-value=0.022  Score=54.83  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=65.0

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |+++-.| +.-...+++....+.+..+++.+.+.. +- +|++..+|++     -+.+   .  .....++.+ ....+.
T Consensus       122 V~v~a~D-~~f~gGSmg~~~geKi~r~~e~A~~~~-lP-lV~l~dSgGa-----RmqE---g--~~sL~~~ak-~~~~~~  187 (285)
T TIGR00515       122 IVVAVFD-FAFMGGSMGSVVGEKFVRAIEKALEDN-CP-LIIFSASGGA-----RMQE---A--LLSLMQMAK-TSAALA  187 (285)
T ss_pred             EEEEEEe-ccccCCCccHHHHHHHHHHHHHHHHcC-CC-EEEEEcCCCc-----cccc---c--hhHHHhHHH-HHHHHH
Confidence            4444443 332567899999999999999887653 44 3444554443     1111   0  011112211 122344


Q ss_pred             HHHcCCCCEEEEeccccchhHHH-HHhhccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLE-VALACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~e-lalacD~ria~~~a  189 (366)
                      ++.....|.|+++.|+|+||+.. .++.+|++||.+++
T Consensus       188 ~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A  225 (285)
T TIGR00515       188 KMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKA  225 (285)
T ss_pred             HHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCe
Confidence            55667899999999999999754 56799999999876

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.24  E-value=0.024  Score=58.99  Aligned_cols=150  Identities=19%  Similarity=0.293  Sum_probs=93.3

Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy9060          77 TLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIES  156 (366)
Q Consensus        77 tlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (366)
                      .-|+|.....+++....+...+.++.+.+. .+- +|.+...++ |..|.+          .+.....+.+.+++..+.+
T Consensus       320 vAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lP-lV~lvDs~G-~~~g~~----------~E~~g~~~~~a~~~~a~~~  386 (512)
T TIGR01117       320 IANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIP-IVTFVDVPG-FLPGVN----------QEYGGIIRHGAKVLYAYSE  386 (512)
T ss_pred             EEeccccccCCCCHHHHHHHHHHHHHHHHc-CCC-EEEEEeCcC-ccccHH----------HHHHHHHHHHHHHHHHHHh
Confidence            444554345679999999999999988754 344 344444443 555432          2223345566778888889


Q ss_pred             CCCCEEEEeccccchhHHHHHhh----ccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh
Q psy9060         157 SPKPIVAAISGSCLGGGLEVALA----CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ  232 (366)
Q Consensus       157 ~~kP~Iaav~G~a~GgG~elala----cD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~  232 (366)
                      ...|.|+.|-|.+.|||+.-+..    +|+++|.+++.                               +|++++-++..
T Consensus       387 ~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~-------------------------------~~v~~pe~a~~  435 (512)
T TIGR01117       387 ATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAE-------------------------------IAVMGPAGAAN  435 (512)
T ss_pred             CCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCe-------------------------------EeecCHHHHHH
Confidence            99999999999998886544432    89988888762                               33333333333


Q ss_pred             HHhhh-c----CHHHHHHH-H--hcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 RLPKL-T----ALPNVLDM-T--LTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 ~l~r~-~----G~~~a~~l-~--ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      .+-+. +    ....+... +  ..-+..++..+.+.|+||.|++|
T Consensus       436 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P  481 (512)
T TIGR01117       436 IIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEP  481 (512)
T ss_pred             HHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeECh
Confidence            33211 1    01111111 1  12234578899999999999998

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.13  E-value=0.021  Score=55.20  Aligned_cols=103  Identities=17%  Similarity=0.302  Sum_probs=64.4

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCC----CccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS----SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQ  148 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~----~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  148 (366)
                      |+++-.+.-- ..-+++....+.+..+++.+.++.    .+-. |++..+|+     +.+.+  .+   .....+.+. .
T Consensus        70 v~v~a~D~tf-~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~Pv-V~l~dSGG-----aRlqE--g~---~~L~~~a~i-~  136 (301)
T PRK07189         70 VVVAAQEGRF-MGGSVGEVHGAKLAGALELAAEDNRNGIPTAV-LLLFETGG-----VRLQE--AN---AGLAAIAEI-M  136 (301)
T ss_pred             EEEEEECCCc-cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCE-EEEecCCC-----cCccc--hH---HHHHHHHHH-H
Confidence            4455554433 457788888899999999988765    1443 44433333     23321  00   111111111 1


Q ss_pred             HHHHHHHcCCCCEEEEeccc--cchhHHHHHhhccEEEEecCC
Q psy9060         149 QILSEIESSPKPIVAAISGS--CLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       149 ~~~~~i~~~~kP~Iaav~G~--a~GgG~elalacD~ria~~~a  189 (366)
                      ..+..+... +|+|+.|.|.  |+||+...+..||++|+++++
T Consensus       137 ~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a  178 (301)
T PRK07189        137 RAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEG  178 (301)
T ss_pred             HHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCc
Confidence            222233333 8999999999  999999999999999999876

>PRK10949 protease 4; Provisional

Probab=97.10  E-value=0.0062  Score=64.62  Aligned_cols=80  Identities=21%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060          92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG  171 (366)
Q Consensus        92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G  171 (366)
                      .+.++.++|+.+.+|+.|+++|+.-...+    |..+         ...    +.+.+.+..+....||+||. ...+.-
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~---------a~~----~eI~~ai~~fk~sGKpVvA~-~~~~~s  157 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQ---------PSM----QYIGKALREFRDSGKPVYAV-GDSYSQ  157 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccH---------HHH----HHHHHHHHHHHHhCCeEEEE-ecCccc
Confidence            34689999999999999999877543221    2111         111    22345556666778999985 444556


Q ss_pred             hHHHHHhhccEEEEecCC
Q psy9060         172 GGLEVALACHYRIAVKDK  189 (366)
Q Consensus       172 gG~elalacD~ria~~~a  189 (366)
                      +++.||.+||.+++.+..
T Consensus       158 ~~YyLASaAD~I~l~P~G  175 (618)
T PRK10949        158 GQYYLASFANKIYLSPQG  175 (618)
T ss_pred             hhhhhhhhCCEEEECCCc
Confidence            789999999999999865

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.03  E-value=0.012  Score=53.43  Aligned_cols=42  Identities=14%  Similarity=0.169  Sum_probs=34.6

Q ss_pred             HHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEE--EEecCC
Q psy9060         148 QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR--IAVKDK  189 (366)
Q Consensus       148 ~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~r--ia~~~a  189 (366)
                      ..++..+...+.||...+-|.+...|.-|+++++..  ++.+++
T Consensus        75 ~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPns  118 (200)
T COG0740          75 LAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNA  118 (200)
T ss_pred             HHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCc
Confidence            456777888899999999999999999999998764  555544

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.02  E-value=0.061  Score=51.85  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=62.8

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++.-.|.-- ...++....-+.+..+++.+.+.. +- +|++..+|+     +-+.+  ..   ....++.+. ...+.
T Consensus       135 v~v~a~Dftf-~gGSmG~v~geKi~ra~e~A~~~r-lP-lV~l~~SGG-----ARmQE--g~---~sL~qmak~-saa~~  200 (296)
T CHL00174        135 VALGVMDFQF-MGGSMGSVVGEKITRLIEYATNES-LP-LIIVCASGG-----ARMQE--GS---LSLMQMAKI-SSALY  200 (296)
T ss_pred             EEEEEECCcc-cccCcCHHHHHHHHHHHHHHHHcC-CC-EEEEECCCC-----ccccc--cc---hhhhhhHHH-HHHHH
Confidence            4444455433 567888888999999999887654 44 344444433     23322  11   111122111 11122


Q ss_pred             H-HHcCCCCEEEEeccccchhHHHH-HhhccEEEEecCC
Q psy9060         153 E-IESSPKPIVAAISGSCLGGGLEV-ALACHYRIAVKDK  189 (366)
Q Consensus       153 ~-i~~~~kP~Iaav~G~a~GgG~el-alacD~ria~~~a  189 (366)
                      . ...-..|.|+++.|+|.||+... ++.||++|+.+++
T Consensus       201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A  239 (296)
T CHL00174        201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNA  239 (296)
T ss_pred             HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCe
Confidence            2 22456899999999999998765 6679999987665

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.02  E-value=0.00074  Score=72.96  Aligned_cols=60  Identities=30%  Similarity=0.525  Sum_probs=55.9

Q ss_pred             CCCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060           1 MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN   60 (366)
Q Consensus         1 ~~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~   60 (366)
                      +++++||+|.+++++++.+...++++++..|.+.|.++..|+++++.++.|+.++.+++.
T Consensus       243 ~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~  302 (715)
T PRK11730        243 KAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGK  302 (715)
T ss_pred             hhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999999999999999999999999999999888654

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.85  E-value=0.055  Score=56.12  Aligned_cols=101  Identities=18%  Similarity=0.298  Sum_probs=65.1

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCC--CcchhhhcCCHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA--DISMLAACKTADQVKQISKSGQQI  150 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~  150 (366)
                      |.++..|.- -...+++....+.+..+++.+.++. +-.|.+ ..     |+|+  ++.+-.     .....+.+. ..-
T Consensus        59 v~v~a~D~t-~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l-~d-----sgGa~~r~~eg~-----~~l~~~g~i-~~~  124 (493)
T PF01039_consen   59 VVVIAQDFT-VLGGSVGEVHGEKIARAIELALENG-LPLVYL-VD-----SGGAFLRMQEGV-----ESLMGMGRI-FRA  124 (493)
T ss_dssp             EEEEEEETT-SGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEE-EE-----ESSBCGGGGGHH-----HHHHHHHHH-HHH
T ss_pred             EEEEEeccc-eecCCCCcccceeeehHHHHHHHcC-CCcEEe-cc-----ccccccccchhh-----hhhhhhHHH-HHH
Confidence            333344433 2567899999999999999988764 343333 22     3444  333211     111222222 223


Q ss_pred             HHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC
Q psy9060         151 LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD  188 (366)
Q Consensus       151 ~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~  188 (366)
                      ..++.. ..|+|++|.|+|.|||..++..||++|++++
T Consensus       125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~  161 (493)
T PF01039_consen  125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKG  161 (493)
T ss_dssp             HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETT
T ss_pred             HHHHhc-CCCeEEEEccccccchhhcccccCccccCcc
Confidence            344555 8899999999999999999999999999987

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.81  E-value=0.022  Score=52.79  Aligned_cols=142  Identities=19%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHhhcC---CCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          88 LNSEVMSEIQSILRRIQSD---SSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d---~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      .+.++.+.+...+-.++.+   .+|.  +.+...|+...+|-=+..             ...+..++..|...+-||...
T Consensus        49 ~~~~~a~~iiaqLl~L~~~~~~k~I~--lyINSpGGsv~~G~~iG~-------------v~~glaIyD~m~~ik~~V~Tv  113 (222)
T PRK12552         49 VGMDVTELIIAQLLYLEFDDPEKPIY--FYINSTGTSWYTGDAIGF-------------ETEAFAICDTMRYIKPPVHTI  113 (222)
T ss_pred             hhHhHHHHHHHHHHHHhccCCCCCEE--EEEeCCCCCccccccccc-------------cccHHHHHHHHHhcCCCeEEE
Confidence            4445777777766666543   3444  334555555555511100             012345677777778899999


Q ss_pred             eccccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhH---------
Q psy9060         165 ISGSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR---------  233 (366)
Q Consensus       165 v~G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~---------  233 (366)
                      +-|.|.+.+.-|++++|-  |++.+++                        ++-+-....|. -| -.+..         
T Consensus       114 ~~G~AaS~AslIl~aG~kg~R~alpns------------------------~iMIHqP~~~~-~G-~A~di~~~a~el~~  167 (222)
T PRK12552        114 CIGQAMGTAAMILSAGTKGQRASLPHA------------------------TIVLHQPRSGA-RG-QATDIQIRAKEVLH  167 (222)
T ss_pred             EEeehhhHHHHHHhCCCCCceecCCCc------------------------EEEeccCCccc-cc-CHHHHHHHHHHHHH
Confidence            999999999999999985  8888776                        44443332222 11 11110         


Q ss_pred             --------HhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         234 --------LPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       234 --------l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                              +....|  ...-.+++-.-.-++|+||+++||||+|+.+
T Consensus       168 ~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        168 NKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence                    011112  1222344445566899999999999999965

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.99  E-value=0.35  Score=50.95  Aligned_cols=96  Identities=14%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060          84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA  163 (366)
Q Consensus        84 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  163 (366)
                      ...+++....+.+..+++.+.+.. +- +|.+..+++.+-.+ ....+    .  ....+.+ +..-..++.....|.|+
T Consensus       141 ~GGs~g~~~~~Ki~r~~elA~~~~-lP-lV~l~DSgGarl~~-q~e~~----~--~~~~~g~-if~~~~~ls~~~VP~Is  210 (569)
T PLN02820        141 KGGTYYPITVKKHLRAQEIAAQCR-LP-CIYLVDSGGANLPR-QAEVF----P--DRDHFGR-IFYNQARMSSAGIPQIA  210 (569)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCCcc-ccccc----c--hHhHHHH-HHHHHHHHhCCCCCEEE
Confidence            568899999999999999887654 44 34444444433221 00000    0  0001111 11112234455689999


Q ss_pred             EeccccchhHHHHHhhccEEEEecCC
Q psy9060         164 AISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       164 av~G~a~GgG~elalacD~ria~~~a  189 (366)
                      +|.|.|.|||......||++|++++.
T Consensus       211 vv~G~~~gGgAy~~a~~D~vim~~~~  236 (569)
T PLN02820        211 LVLGSCTAGGAYVPAMADESVIVKGN  236 (569)
T ss_pred             EEeCCCChHHHHHHHhCCceEEecCC
Confidence            99999999999999999999999763

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.27  E-value=0.47  Score=49.46  Aligned_cols=92  Identities=21%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060          84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA  163 (366)
Q Consensus        84 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  163 (366)
                      ..-+++....+.+..+++.+.++. +- +|.+..+++.     .+.+  ....   ...+.+.+... . ...-..|.|+
T Consensus        94 ~gGS~g~~~~~K~~r~~e~A~~~~-lP-lV~l~dSgGa-----rm~e--g~~~---l~~~~~~~~~~-~-~~s~~iP~Is  159 (512)
T TIGR01117        94 MGGSLGEMHAAKIVKIMDLAMKMG-AP-VVGLNDSGGA-----RIQE--AVDA---LKGYGDIFYRN-T-IASGVVPQIS  159 (512)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHcC-CC-EEEEecCCCC-----Cccc--cchh---hhhHHHHHHHH-H-HHcCCCcEEE
Confidence            457788888899999999887765 34 3444443333     2221  0000   11111111111 1 1233589999


Q ss_pred             EeccccchhHHHHHhhccEEEEecCC
Q psy9060         164 AISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       164 av~G~a~GgG~elalacD~ria~~~a  189 (366)
                      +|.|+|.||+......||++|+.++.
T Consensus       160 vv~G~~~GG~a~~~al~D~vim~~~~  185 (512)
T TIGR01117       160 AIMGPCAGGAVYSPALTDFIYMVDNT  185 (512)
T ss_pred             EEecCCCcHHHHHHHhcCceEEeccc
Confidence            99999999998887799999999864

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=95.19  E-value=0.11  Score=49.52  Aligned_cols=92  Identities=16%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                      +.+.+-+..+.+++.|+|+.|=|-.-+||.--..-+|.+.+.+++                        +++       +
T Consensus       175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s------------------------~yS-------V  223 (317)
T COG0825         175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENS------------------------TYS-------V  223 (317)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhc------------------------eee-------e
Confidence            344556677889999999999998877776555567888888776                        333       2


Q ss_pred             CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +++-|.+..|=+  ...+|.+. ...-.++|++.+++|+||.|+|.
T Consensus       224 isPEG~AsILWk--D~~ka~eA-Ae~mkita~dLk~lgiID~II~E  266 (317)
T COG0825         224 ISPEGCASILWK--DASKAKEA-AEAMKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             cChhhhhhhhhc--ChhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence            333333333322  34455443 34567999999999999999975

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.06  E-value=0.99  Score=47.67  Aligned_cols=140  Identities=14%  Similarity=0.229  Sum_probs=90.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          87 SLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        87 al~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      .++.+-.+...+.++.+.. -++- +|.+...+ .|..|.+          .+...+.+.+.+++..+.....|.|++|-
T Consensus       381 ~l~~~~a~Kaarfi~lc~~-~~iP-lv~l~D~p-Gf~~G~~----------~E~~G~~~~~a~l~~A~a~~~VP~isvi~  447 (569)
T PLN02820        381 ILFTESALKGAHFIELCAQ-RGIP-LLFLQNIT-GFMVGSR----------SEASGIAKAGAKMVMAVACAKVPKITIIV  447 (569)
T ss_pred             ccCHHHHHHHHHHHHHHHh-cCCC-EEEEEECC-CCCCCHH----------HHHhhHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            4677777777888877765 3455 34444443 3666543          22234567888999999999999999999


Q ss_pred             cccchhHHHHHh----hccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhh-c---
Q psy9060         167 GSCLGGGLEVAL----ACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL-T---  238 (366)
Q Consensus       167 G~a~GgG~elal----acD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~-~---  238 (366)
                      |.++|+|..-+.    ..|++++.++                               ..+|++++-++...+.+. +   
T Consensus       448 g~a~G~g~~aM~g~~~~~d~~~awp~-------------------------------A~i~vmg~e~aa~il~~~e~~~~  496 (569)
T PLN02820        448 GGSFGAGNYGMCGRAYSPNFLFMWPN-------------------------------ARIGVMGGAQAAGVLAQIERENK  496 (569)
T ss_pred             CCcchHHHHHhcCcCCCCCEEEECCC-------------------------------CeEEecCHHHHHHHHHHHHhhhh
Confidence            999998876554    3455555544                               456777766666555431 1   


Q ss_pred             ---------CHHHHH-HHH--hcCCCcCHHHHHHcCCcceecCC
Q psy9060         239 ---------ALPNVL-DMT--LTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       239 ---------G~~~a~-~l~--ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                               ....++ +.+  ..-+..++-.|.+.|+||.|++|
T Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP  540 (569)
T PLN02820        497 KRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDP  540 (569)
T ss_pred             hhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCH
Confidence                     111111 111  11224577788899999999988

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=94.76  E-value=0.36  Score=50.14  Aligned_cols=151  Identities=16%  Similarity=0.295  Sum_probs=89.9

Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHH
Q psy9060          76 VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIE  155 (366)
Q Consensus        76 Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (366)
                      |.-|+|....-.++.+-.....+.++.+... ++- +|.+...+ .|..|-+          .+.....+.+.+++..+.
T Consensus       298 iian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iP-lv~l~dtp-Gf~~g~~----------~E~~g~~~~ga~~~~a~~  364 (493)
T PF01039_consen  298 IIANNPRQRAGALDPDGARKAARFIRLCDAF-NIP-LVTLVDTP-GFMPGPE----------AERAGIIRAGARLLYALA  364 (493)
T ss_dssp             EEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T---EEEEEEEC-EB--SHH----------HHHTTHHHHHHHHHHHHH
T ss_pred             EEEeccccccccCChHHHHHHHHHHHHHHhh-CCc-eEEEeecc-cccccch----------hhhcchHHHHHHHHHHHH
Confidence            3445554223369999999999988888763 455 44444443 4655432          333456678889999999


Q ss_pred             cCCCCEEEEeccccchhHHHHHhhc----cEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH
Q psy9060         156 SSPKPIVAAISGSCLGGGLEVALAC----HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT  231 (366)
Q Consensus       156 ~~~kP~Iaav~G~a~GgG~elalac----D~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~  231 (366)
                      +++.|+|..|-|.+.|||.......    |+++|.+++                               .+|++++-+..
T Consensus       365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a-------------------------------~~~vm~~e~a~  413 (493)
T PF01039_consen  365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTA-------------------------------EIGVMGPEGAA  413 (493)
T ss_dssp             HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT--------------------------------EEESS-HHHHH
T ss_pred             cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcc-------------------------------eeeecChhhhh
Confidence            9999999999999999887555544    666666655                               45565555554


Q ss_pred             hHHhhhc-------C--HHH-HHHHHh--cCCCcCHHHHHHcCCcceecCC
Q psy9060         232 QRLPKLT-------A--LPN-VLDMTL--TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       232 ~~l~r~~-------G--~~~-a~~l~l--tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ..+-+.-       |  ... ..+++-  .-+..++..+...|++|.|++|
T Consensus       414 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p  464 (493)
T PF01039_consen  414 SILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDP  464 (493)
T ss_dssp             HHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG
T ss_pred             eeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH
Confidence            4443211       1  000 111111  1122588899999999999987

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=93.99  E-value=3.2  Score=39.54  Aligned_cols=92  Identities=18%  Similarity=0.241  Sum_probs=61.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ...+..-.-+.+..+++.+-++. .. +|+.+.+|++     -..|  .   .-...++. .....+.++.....|.|+.
T Consensus       135 gGSmGsVvGeki~ra~E~A~e~k-~P-~v~f~aSGGA-----RMQE--g---~lSLMQMa-ktsaAl~~l~ea~lpyIsV  201 (294)
T COG0777         135 GGSMGSVVGEKITRAIERAIEDK-LP-LVLFSASGGA-----RMQE--G---ILSLMQMA-KTSAALKRLSEAGLPYISV  201 (294)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhC-CC-EEEEecCcch-----hHhH--H---HHHHHHHH-HHHHHHHHHHhcCCceEEE
Confidence            45677777799999999988765 45 3455655542     1111  0   01122222 2345567778888999999


Q ss_pred             eccccchhH-HHHHhhccEEEEecCC
Q psy9060         165 ISGSCLGGG-LEVALACHYRIAVKDK  189 (366)
Q Consensus       165 v~G~a~GgG-~elalacD~ria~~~a  189 (366)
                      +..+..||= ...++..|+.||.+.+
T Consensus       202 Lt~PTtGGVsASfA~lGDi~iAEP~A  227 (294)
T COG0777         202 LTDPTTGGVSASFAMLGDIIIAEPGA  227 (294)
T ss_pred             ecCCCccchhHhHHhccCeeecCccc
Confidence            999999884 4778889999988766

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=91.11  E-value=0.38  Score=49.86  Aligned_cols=92  Identities=16%  Similarity=0.180  Sum_probs=57.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060          84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA  163 (366)
Q Consensus        84 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  163 (366)
                      +..++.+-..+.+..+.+.+.++.. -++.|..+      .|+.+.+-..  +   ...+. .+..-..++... +|.|+
T Consensus       103 ~gGt~~~~~~~Ki~r~~~~A~~~g~-P~i~l~ds------gGari~~~v~--~---l~g~g-~iF~~~a~~Sg~-IPqIs  168 (526)
T COG4799         103 KGGTLGEMTAKKILRAQELAIENGL-PVIGLNDS------GGARIQEGVP--S---LAGYG-RIFYRNARASGV-IPQIS  168 (526)
T ss_pred             ecccccccccchHHHHHHHHHHcCC-CEEEEEcc------cccccccCcc--c---cccch-HHHHHHHHhccC-CCEEE
Confidence            5677777777888888887776543 22333222      3333332100  0   00000 111112223334 89999


Q ss_pred             EeccccchhHHHHHhhccEEEEecCC
Q psy9060         164 AISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       164 av~G~a~GgG~elalacD~ria~~~a  189 (366)
                      +|.|.|.|||..+...||++|+.++.
T Consensus       169 vv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         169 VVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             EEEecCcccccccccccceEEEEcCC
Confidence            99999999999999999999999984

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=85.96  E-value=14  Score=38.57  Aligned_cols=157  Identities=18%  Similarity=0.269  Sum_probs=97.4

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++ .-|+|......|+.+--+.-.+.++-... .++- +|++... ..|.-|-|          .+...+.+++..++.
T Consensus       326 VGi-IANqp~~~~G~l~~~sa~KaArFI~~cd~-~~iP-lv~L~d~-pGFm~G~~----------~E~~giik~Gakl~~  391 (526)
T COG4799         326 VGI-IANQPRHLGGVLDIDSADKAARFIRLCDA-FNIP-LVFLVDT-PGFMPGTD----------QEYGGIIKHGAKLLY  391 (526)
T ss_pred             EEE-EecCccccccccchHHHHHHHHHHHhhhc-cCCC-eEEEeCC-CCCCCChh----------HHhChHHHhhhHHHh
Confidence            443 35666545678888888888888855544 3455 4555444 45888765          334457788999999


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ  232 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~  232 (366)
                      ++.+...|.|..|-|.+.|||...+..-++-            +.+               .|..|..++++.-+-|...
T Consensus       392 A~aeatVPkitvI~rkayGga~~~M~~~~~~------------~~~---------------~~AwP~a~iaVMG~egAv~  444 (526)
T COG4799         392 AVAEATVPKITVITRKAYGGAYYVMGGKALG------------PDF---------------NYAWPTAEIAVMGPEGAVS  444 (526)
T ss_pred             hHhhccCCeEEEEecccccceeeeecCccCC------------Cce---------------eEecCcceeeecCHHHHHH
Confidence            9999999999999999999987543322211            011               4555666666665555544


Q ss_pred             HHhhh-c-CHHH-H---------HHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 RLPKL-T-ALPN-V---------LDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 ~l~r~-~-G~~~-a---------~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      .+-+. + ...+ .         +.--..-+..++--|.+.|++|.|.+|
T Consensus       445 i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p  494 (526)
T COG4799         445 ILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP  494 (526)
T ss_pred             HHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH
Confidence            44431 1 1111 0         001112222456677889999999987

>KOG0840|consensus

Probab=82.54  E-value=12  Score=35.40  Aligned_cols=22  Identities=23%  Similarity=0.628  Sum_probs=18.5

Q ss_pred             cCCCcCHHHHHHcCCcceecCC
Q psy9060         249 TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       249 tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      .-+-++|+||++.||||+|...
T Consensus       236 Rd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  236 RDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             ccccCCHHHHHHhcchhhhhcC
Confidence            3455899999999999999963

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=82.41  E-value=2.4  Score=41.17  Aligned_cols=79  Identities=20%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhhcCC---CccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          91 EVMSEIQSILRRIQSDS---SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        91 ~~~~eL~~al~~~~~d~---~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ....++.++|+.+....   .+-++||..|+|. +   -||..|.+              ..+.+.|..++.|||++| |
T Consensus        55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-~---eDL~~FN~--------------e~varai~~~~~PvisaI-G  115 (319)
T PF02601_consen   55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGS-I---EDLWAFND--------------EEVARAIAASPIPVISAI-G  115 (319)
T ss_pred             chHHHHHHHHHHHHhccccccccEEEEecCCCC-h---HHhcccCh--------------HHHHHHHHhCCCCEEEec-C
Confidence            34678888888887654   5666777666542 1   24433322              357788999999999999 4


Q ss_pred             ccchhHHHHHhhccEEEEecCC
Q psy9060         168 SCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       168 ~a~GgG~elalacD~ria~~~a  189 (366)
                      |-.-- .-.=+.+|+|..++++
T Consensus       116 He~D~-ti~D~vAd~ra~TPta  136 (319)
T PF02601_consen  116 HETDF-TIADFVADLRAPTPTA  136 (319)
T ss_pred             CCCCc-hHHHHHHHhhCCCHHH
Confidence            43321 2344567888777764

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit

Probab=80.60  E-value=3  Score=42.60  Aligned_cols=81  Identities=12%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccc
Q psy9060          89 NSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGS  168 (366)
Q Consensus        89 ~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~  168 (366)
                      ..+...++..+++.+...+++.++||..|+| ++   -||..|.+              ..+.+.+..||.|||.+| ||
T Consensus       168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-s~---eDL~~Fn~--------------e~~~rai~~~~~Pvis~i-GH  228 (432)
T TIGR00237       168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-SL---EDLWSFND--------------EKVARAIFLSKIPIISAV-GH  228 (432)
T ss_pred             CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-CH---HHhhhcCc--------------HHHHHHHHcCCCCEEEec-Cc
Confidence            3445678888898888766677666655544 21   24433322              357788999999999999 33


Q ss_pred             cchhHHHHHhhccEEEEecCC
Q psy9060         169 CLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       169 a~GgG~elalacD~ria~~~a  189 (366)
                      -.-- .-.=+.+|+|..++.+
T Consensus       229 e~D~-ti~D~vAd~ra~TPta  248 (432)
T TIGR00237       229 ETDF-TISDFVADLRAPTPSA  248 (432)
T ss_pred             CCCc-cHHHHhhhccCCCcHH
Confidence            2211 2244667888888765

This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	366
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-24
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		2e-23
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		1e-22
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-22
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		1e-21
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		1e-21
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-21
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		3e-21
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		3e-21
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		3e-21
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-21
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		1e-20
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-19
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		2e-18
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		1e-17
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		1e-17
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		1e-17
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		6e-16
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		2e-15
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		2e-15
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-15
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		2e-15
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		7e-15
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		7e-15
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-14
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		4e-14
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		5e-14
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-13
2w3p_A	556	Boxc Crystal Structure Length = 556		1e-13
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		1e-13
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-13
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		8e-13
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		1e-12
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		3e-12
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		9e-12
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		1e-11
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-11
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		2e-11
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		2e-11
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		8e-11
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		9e-11
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-10
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-10
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-10
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		2e-10
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-10
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		2e-09
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		5e-09
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		9e-09
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		9e-09
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		1e-08
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		1e-08
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-08
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-08
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-08
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		3e-08
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		4e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-07
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		2e-07
3lao_A	258	Crystal Structure Of Enoyl-Coa Hydratase From Pseud		6e-07
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-06
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		3e-06
3q1t_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		5e-06
3m6m_A	305	Crystal Structure Of Rpff Complexed With Rec Domain		5e-06
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		7e-06
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		9e-06
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		9e-06
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-05
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-05
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-05
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-05
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-05
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-05
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		2e-05
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		2e-05
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		3e-05
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-05
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		4e-05
3ot6_A	232	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		5e-05
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		9e-05
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		9e-05
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-04
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-04
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		3e-04
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		7e-04

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 27/193 (13%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           + V TL+      N+ +S+V  ++  ++ +++ D +IR  V+I G+   F AGADI    
Sbjct: 16  IAVATLNH--APANAXSSQVXHDVTELIDQVEKDDNIR-VVVIHGEGRFFSAGADIKEFT 72
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           +   A Q  ++++ GQ     +E   KP++AAI G+ LGGGLE A +CH R A +  K  
Sbjct: 73  SVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAK-- 130
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                                 LGLPE+ LGL+PG  GTQRLP+        +  LT   
Sbjct: 131 ----------------------LGLPELTLGLIPGFAGTQRLPRYVGKAKACEXXLTSTP 168
Query: 253 LKADKAKKMGIVD 265
           +   +A K G+V+
Sbjct: 169 ITGAEALKWGLVN 181

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 128/270 (47%), Gaps = 42/270 (15%)
Query: 56  ECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVII 115
           E KK     FKE  + ++ +        K NS + E   E  + +  I+ D  I+  ++ 
Sbjct: 5   ETKKQYLTVFKEDGIAEIHLHI-----NKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVX 59
Query: 116 SGKPGCFIAGADISMLAACKTAD-QVK-QISKSGQQILSEIESSPKPIVAAISGSCLGGG 173
           S  P  F AGADI+ L   ++AD + K Q      + L +I  SP+  +A + G  +GGG
Sbjct: 60  SDVPKFFSAGADINFL---RSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGG 116
Query: 174 LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR 233
           LE ALAC  R                          D+   +GLPEV LG+L G GGTQR
Sbjct: 117 LEXALACDLRFX-----------------------GDEAGKIGLPEVSLGVLAGTGGTQR 153
Query: 234 LPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 293
           L +L      LD  +TG+T+   +A ++G+V+++            ERT EY  ++A + 
Sbjct: 154 LARLIGYSRALDXNITGETITPQEALEIGLVNRVFPQA-----ETRERTREYARKLANSA 208
Query: 294 ASQLASGKLKINRIKPMIPDKVLDVALKFE 323
              +++ KL I   K    +  L+VA+++E
Sbjct: 209 TYAVSNIKLAIXNGK----EXPLNVAIRYE 234

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 48/283 (16%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           ++ +  D  G  VN  N   ++E++  +  I++D+S++  ++ SGK   FI GADI+   
Sbjct: 17  IVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKD-VFIVGADITEFV 75
Query: 133 ACKTADQVKQISKS--GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
                   + I+ +    +I S+ E    P VAAI+G  LGGGLE+ LA  +R+     K
Sbjct: 76  ENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAK 135
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                   +GLPEV LG+ PG GGT RLP+L  + N ++   +G
Sbjct: 136 ------------------------IGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASG 171
Query: 251 KTLKADKAKKMGIVDQLV--EPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIK 308
           K  +A+ A K+  VD +V  + LG       +R +    E+      Q    KLK+N I+
Sbjct: 172 KENRAEDALKVSAVDAVVTADKLGAAALDLIKRAIS--GELDYKAKRQPKLEKLKLNAIE 229
Query: 309 PMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKS 351
            M         + FE  +  + G+A        G  YPAP+++
Sbjct: 230 QM---------MAFETAKGFVAGQA--------GPNYPAPVEA 255

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 36/225 (16%)
Query: 48  MGLFRAQTECKKNSTKHF----KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRI 103
           MG   AQT+   + T       +++ VG   ++TL+ P   +N+LNS+VM+E+ S    +
Sbjct: 9   MGTLEAQTQGPGSMTYETILVERDQRVG---IITLNRPQA-LNALNSQVMNEVTSAATEL 64
Query: 104 QSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA 163
             D  I  A+II+G    F AGADI  +A    AD       +    L+ + +   P +A
Sbjct: 65  DDDPDI-GAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRT---PTIA 120
Query: 164 AISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG 223
           A++G  LGGG E+A+ C   IA    K                         G PE+ LG
Sbjct: 121 AVAGYALGGGCELAMMCDVLIAADTAK------------------------FGQPEIKLG 156
Query: 224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 268
           +LPG GG+QRL +       +D+ LTG+T+ A +A++ G+V ++V
Sbjct: 157 VLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVV 201

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 99/194 (51%), Gaps = 29/194 (14%)
Query: 75  VVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC 134
           ++TL+ P   +N+LNS+VM+E+ S    +  D  I  A+II+G    F AGADI  +A  
Sbjct: 16  IITLNRPQA-LNALNSQVMNEVTSAATELDDDPDI-GAIIITGSAKAFAAGADIKEMADL 73
Query: 135 KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLG 194
             AD       +    L+ + +   P +AA++G  LGGG E+A+ C   IA    K    
Sbjct: 74  TFADAFTADFFATWGKLAAVRT---PTIAAVAGYALGGGCELAMMCDVLIAADTAK---- 126
Query: 195 LPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLK 254
                                G PE+ LG+LPG GG+QRL +       +D+ LTG+T+ 
Sbjct: 127 --------------------FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMD 166
Query: 255 ADKAKKMGIVDQLV 268
           A +A++ G+V ++V
Sbjct: 167 AAEAERSGLVSRVV 180

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 99/194 (51%), Gaps = 29/194 (14%)
Query: 75  VVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC 134
           ++TL+ P   +N+LNS+VM+E+ S    +  D  I  A+II+G    F AGADI  +A  
Sbjct: 17  IITLNRPQA-LNALNSQVMNEVTSAATELDDDPDI-GAIIITGSAKAFAAGADIKEMADL 74
Query: 135 KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLG 194
             AD       +    L+ + +   P +AA++G  LGGG E+A+ C   IA    K    
Sbjct: 75  TFADAFTADFFATWGKLAAVRT---PTIAAVAGYALGGGCELAMMCDVLIAADTAK---- 127
Query: 195 LPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLK 254
                                G PE+ LG+LPG GG+QRL +       +D+ LTG+T+ 
Sbjct: 128 --------------------FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMD 167
Query: 255 ADKAKKMGIVDQLV 268
           A +A++ G+V ++V
Sbjct: 168 AAEAERSGLVSRVV 181

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 38/205 (18%)
Query: 85  VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144
           VN+++  V+ E+++ L++  SD +++ A++I G  G F AGADI   +A      +  + 
Sbjct: 41  VNAVSPTVIREVRNGLQKAGSDHTVK-AIVICGANGNFCAGADIHGFSAFTPGLALGSL- 98
Query: 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHY 204
                 + EI+   KP++AAI G  LGGGLE+AL CHYRIA                   
Sbjct: 99  ------VDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIA------------------- 133
Query: 205 RIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIV 264
                + K  +GLPEV LG+LPGA GTQ LP++  +P  LD+  +GK L AD+A ++GI+
Sbjct: 134 -----NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGIL 188
Query: 265 DQLVEPLGPGLNHPEERTMEYLEEV 289
           D +V+      + P E  +++ +++
Sbjct: 189 DAVVK------SDPVEEAIKFAQKI 207

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 38/205 (18%)
Query: 85  VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144
           VN+++  V+ E+++ L++  SD +++ A++I G  G F AGADI   +A      +  + 
Sbjct: 26  VNAVSPTVIREVRNGLQKAGSDHTVK-AIVICGANGNFCAGADIHGFSAFTPGLALGSL- 83
Query: 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHY 204
                 + EI+   KP++AAI G  LGGGLE+AL CHYRIA                   
Sbjct: 84  ------VDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIA------------------- 118
Query: 205 RIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIV 264
                + K  +GLPEV LG+LPGA GTQ LP++  +P  LD+  +GK L AD+A ++GI+
Sbjct: 119 -----NAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGIL 173
Query: 265 DQLVEPLGPGLNHPEERTMEYLEEV 289
           D +V+      + P E  +++ +++
Sbjct: 174 DAVVK------SDPVEEAIKFAQKI 192

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 29/201 (14%)
Query: 68  KAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGAD 127
           + V  V ++ LD P   +N+LN  + +E+    R   +D  I  A++++G    F AGAD
Sbjct: 15  RPVAGVGLIRLDRPDA-LNALNQTLEAEVLDAARDFDADLEI-GAIVVTGSERAFAAGAD 72
Query: 128 ISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
           I+ +         ++   SG   L+++    KPIVAA++G  LGGG E+A+ C   IA  
Sbjct: 73  IAEMVTLTPHQARERNLLSGWDSLTQVR---KPIVAAVAGYALGGGCELAMLCDLVIAAD 129
Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
             +                         G PE+ LG+LPG GGTQRL +       +D+ 
Sbjct: 130 TAR------------------------FGQPEITLGILPGLGGTQRLTRAVGKAKAMDLC 165
Query: 248 LTGKTLKADKAKKMGIVDQLV 268
           LTG++L A++A+++G+V ++V
Sbjct: 166 LTGRSLTAEEAERVGLVSRIV 186

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 30/196 (15%)
Query: 97  QSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIES 156
           Q+IL +I  +++ R  ++       F AGAD+   A     +QV+      +     +E 
Sbjct: 42  QNILTQINEEANTRVVILTGAGEKAFCAGADLKERAG-XNEEQVRHAVSXIRTTXEXVEQ 100
Query: 157 SPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLG 216
            P+P++AAI+G  LGGG E++LAC +RIA +                           LG
Sbjct: 101 LPQPVIAAINGIALGGGTELSLACDFRIAAES------------------------ASLG 136
Query: 217 LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLN 276
           L E  L ++PGAGGTQRLP+L  +    ++  TG+ + A +AK+ G+V+  V P    ++
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVE-FVVP----VH 191
Query: 277 HPEERTMEYLEEVAVN 292
             EE+ +E  E++A N
Sbjct: 192 LLEEKAIEIAEKIASN 207

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 49/238 (20%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL++TL+ P  + N+LN+ ++ ++ + L    +D+SI S  +I+G    F AGAD++ +A
Sbjct: 15  VLLLTLNRPAAR-NALNNALLMQLVNELEAAATDTSI-SVCVITGNARFFAAGADLNEMA 72
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
                D    ++ +  Q+ + +++  KP++AA++G  LG G E+AL C            
Sbjct: 73  ---EKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCD----------- 118
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                        +VV  +    GLPE+ LG++PGAGGTQRL +         M L+G++
Sbjct: 119 -------------VVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGES 165
Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPM 310
           + A +A++ G+V  +          P + T+EY        A QLAS   K+ R  P+
Sbjct: 166 ITAQQAQQAGLVSDV---------FPSDLTLEY--------ALQLAS---KMARHSPL 203

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 38/205 (18%)
Query: 85  VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144
           VN+++  V+ E+++ L++  SD +++ A++I G  G F AGADI   +A      +  + 
Sbjct: 41  VNAVSPTVIREVRNGLQKAGSDHTVK-AIVICGANGNFCAGADIHGFSAFTPGLALGSL- 98
Query: 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHY 204
                 + EI+   KP++AAI G  LGGGLE+AL CHYRIA                   
Sbjct: 99  ------VDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIA------------------- 133
Query: 205 RIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIV 264
                + K  +GLP V LG+LPGA GTQ LP++  +P  LD+  +GK L AD+A ++GI+
Sbjct: 134 -----NAKARVGLPAVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGIL 188
Query: 265 DQLVEPLGPGLNHPEERTMEYLEEV 289
           D +V+      + P E  +++ +++
Sbjct: 189 DAVVK------SDPVEEAIKFAQKI 207

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 36/207 (17%)
Query: 66  KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG 125
           +E AVG   ++ L  P V +N+L+ ++++EI + +     +  +R  ++++G+   F AG
Sbjct: 11  QEGAVG---IIELARPDV-LNALSRQMVAEIVAAVEAFDRNEKVR-VIVLTGRGRAFAAG 65
Query: 126 ADISMLAACK--TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           ADI  +A       + + Q +   +  LS +++   P++AA++G  LGGG E+AL+C   
Sbjct: 66  ADIQEMAKDDPIRLEWLNQFADWDR--LSIVKT---PMIAAVNGLALGGGFELALSCD-- 118
Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
                                 ++V       G PEV LG++PGAGGTQRL KL      
Sbjct: 119 ----------------------LIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 156
Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEP 270
           L+   TG  + A +A+++GIV+++V P
Sbjct: 157 LEWLWTGARMSAKEAEQLGIVNRVVSP 183

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 34/205 (16%)
Query: 71  GD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
           GD V V+TL +P   VNSL+ +V+  ++S      S + ++ A++I+G  G F  G DIS
Sbjct: 15  GDGVAVITLINP--PVNSLSFDVLYNLKSNYEEALSRNDVK-AIVITGAKGRFSGGFDIS 71
Query: 130 MLAACKTADQVKQISKSGQ---QILSEI-ESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
                +  + VK+  K+G     I++++ E++ KP VAAI G  LGGGLE+A+ACH RI+
Sbjct: 72  GFGEMQKGN-VKE-PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARIS 129
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
               +                        LGLPE+ LG++PG GGTQRLP+L  L   L+
Sbjct: 130 APAAQ------------------------LGLPELQLGVIPGFGGTQRLPRLVGLTKALE 165
Query: 246 MTLTGKTLKADKAKKMGIVDQLVEP 270
           M LT K +KA++   +G++D +V P
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPP 190

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 45/249 (18%)
Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           + K  K  +VG   ++ L+ P   +N+L + ++ E+   L   + D ++  A++++G   
Sbjct: 9   TEKKGKNSSVG---LIQLNRPKA-LNALCNGLIEELNQALETFEEDPAV-GAIVLTGGEK 63
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQI--LSEIESSPKPIVAAISGSCLGGGLEVAL 178
            F AGADI  +      ++  Q   SG+ +     I    KP++AA++G  LGGG E+A+
Sbjct: 64  AFAAGADIKEMQ-----NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAM 118
Query: 179 ACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT 238
            C                         I+   +K   G PE++LG +PGAGGTQRL +  
Sbjct: 119 MCD------------------------IIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV 154
Query: 239 ALPNVLDMTLTGKTLKADKAKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQ 296
                ++M LTG  + A  AK+ G+V ++  VE L        E  ++  E++A N+   
Sbjct: 155 GKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL-------VEEAIQCAEKIANNSKII 207
Query: 297 LASGKLKIN 305
           +A  K  +N
Sbjct: 208 VAMAKESVN 216

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 45/249 (18%)
Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           + K  K  +VG   ++ L+ P   +N+L + ++ E+   L   + D ++  A++++G   
Sbjct: 8   TEKKGKNSSVG---LIQLNRPKA-LNALCNGLIEELNQALETFEEDPAV-GAIVLTGGEK 62
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQI--LSEIESSPKPIVAAISGSCLGGGLEVAL 178
            F AGADI  +      ++  Q   SG+ +     I    KP++AA++G  LGGG E+A+
Sbjct: 63  AFAAGADIKEMQ-----NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAM 117
Query: 179 ACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT 238
            C                         I+   +K   G PE++LG +PGAGGTQRL +  
Sbjct: 118 MCD------------------------IIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV 153
Query: 239 ALPNVLDMTLTGKTLKADKAKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQ 296
                ++M LTG  + A  AK+ G+V ++  VE L        E  ++  E++A N+   
Sbjct: 154 GKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL-------VEEAIQCAEKIANNSKII 206
Query: 297 LASGKLKIN 305
           +A  K  +N
Sbjct: 207 VAMAKESVN 215

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 45/249 (18%)
Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           + K  K  +VG   ++ L+ P   +N+L + ++ E+   L   + D ++  A++++G   
Sbjct: 6   TEKKGKNSSVG---LIQLNRPKA-LNALCNGLIEELNQALETFEEDPAV-GAIVLTGGEK 60
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQI--LSEIESSPKPIVAAISGSCLGGGLEVAL 178
            F AGADI  +      ++  Q   SG+ +     I    KP++AA++G  LGGG E+A+
Sbjct: 61  AFAAGADIKEMQ-----NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAM 115
Query: 179 ACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLT 238
            C                         I+   +K   G PE++LG +PGAGGTQRL +  
Sbjct: 116 MCD------------------------IIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV 151
Query: 239 ALPNVLDMTLTGKTLKADKAKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQ 296
                ++M LTG  + A  AK+ G+V ++  VE L        E  ++  E++A N+   
Sbjct: 152 GKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL-------VEEAIQCAEKIANNSKII 204
Query: 297 LASGKLKIN 305
           +A  K  +N
Sbjct: 205 VAMAKESVN 213

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 41/245 (16%)
Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           K  K   VG   ++ L+ P   +N+L   ++ E+   L+  + D ++  A++++G    F
Sbjct: 36  KRGKNNTVG---LIQLNRPKA-LNALCDGLIDELNQALKIFEEDPAV-GAIVLTGGDKAF 90
Query: 123 IAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
            AGADI  +      D            L++++   KP++AA++G   GGG E+A+ C  
Sbjct: 91  AAGADIKEMQNLSFQDCYSSKFLKHWDHLTQVK---KPVIAAVNGYAFGGGCELAMMCD- 146
Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
                                  I+   +K     PE+++G +PGAGGTQRL +      
Sbjct: 147 -----------------------IIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSL 183
Query: 243 VLDMTLTGKTLKADKAKKMGIVDQL--VEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            ++M LTG  + A  AK+ G+V ++  VE L        E  ++  E++A N+   +A  
Sbjct: 184 AMEMVLTGDRISAQDAKQAGLVSKICPVETL-------VEEAIQCAEKIASNSKIVVAMA 236
Query: 301 KLKIN 305
           K  +N
Sbjct: 237 KESVN 241

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G+V+V+T++ P  + N++N+ V   +   L   Q D  +R+ V+       F AGAD+  
Sbjct: 17  GNVMVITINRPEAR-NAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +A  +               +       KP +AA++G+ LGGG E+ALA           
Sbjct: 76  IARRENLYHPDHPEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASD--------- 124
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                          +VV D++   GLPEV  GL+  AGG  R+ +       + + LTG
Sbjct: 125 ---------------LVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTG 169
Query: 251 KTLKADKAKKMGIVDQLVE 269
           + L A  A+  G+++++VE
Sbjct: 170 EPLSAAAARDWGLINEVVE 188

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 70  VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS 129
           VG VL + L+ P  K N+LN  +M+ ++  L  I     IR AV+I G    F AG D+S
Sbjct: 23  VGPVLTIGLNRPK-KRNALNDGLMAALKDCLTDIPD--QIR-AVVIHGIGDHFSAGLDLS 78
Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
            L      + +   S++  ++  +I+    P++AA+ G+ +GGGLE+A A H R+A    
Sbjct: 79  ELRERDATEGLVH-SQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVA---- 133
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                               +      LPE   G+  G GG+ RLP+L  +  + DM LT
Sbjct: 134 --------------------EASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLT 173
Query: 250 GKTLKADKAKKMGIVDQLVE 269
           G+   A +    G    L+E
Sbjct: 174 GRVYSAAEGVVHGFSQYLIE 193

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 45/203 (22%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL++T++ P  + N++N  V   + +   ++ S + + S  II+G  G F AG D+    
Sbjct: 17  VLLITINRPDAR-NAVNRAVSQGLAAAADQLDSSADL-SVAIITGAGGNFCAGMDLKAFV 74
Query: 133 ACKTADQVKQISKSGQQILSE----IESSP--KPIVAAISGSCLGGGLEVALACHYRIAV 186
                        SG+ +LSE      + P  KPI+AA+ G  L GG E+ L+C      
Sbjct: 75  -------------SGEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCD----- 116
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
                              +VV  +    G+PEV  GL+ GAGG  RLP        +++
Sbjct: 117 -------------------LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMEL 157
Query: 247 TLTGKTLKADKAKKMGIVDQLVE 269
            LTG++  A+ A K G +++LV+
Sbjct: 158 ALTGESFTAEDAAKYGFINRLVD 180

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G+V+V+T++ P  + N++N+ V   +   L   Q D  +R+ V+       F AGAD+  
Sbjct: 17  GNVMVITINRPEAR-NAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +A  +               +       KP +AA++G+ LGGG E+ALA           
Sbjct: 76  IARRENLYHPDHPEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASD--------- 124
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                          +VV D++   GLPEV  GL+  AGG  R+ +       + + LTG
Sbjct: 125 ---------------LVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTG 169
Query: 251 KTLKADKAKKMGIVDQLVE 269
           + L A  A+  G+++++VE
Sbjct: 170 EPLSAAAARDWGLINEVVE 188

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 37/206 (17%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL V L+ P  K N++N     E+    ++I  DS  R AV++SG    F +G D+  +A
Sbjct: 14  VLHVQLNRPE-KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMA 71
Query: 133 A----------CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
           +           + A  ++ +    Q+  + IE  PKP++AAI G C+GGG+++  AC  
Sbjct: 72  SDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131
Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
           R   +D                            + EV +GL    G  QRLPK+    +
Sbjct: 132 RYCTQD------------------------AFFQVKEVDVGLAADVGTLQRLPKVIGNRS 167
Query: 243 VLD-MTLTGKTLKADKAKKMGIVDQL 267
           +++ +T T + + AD+A   G+V ++
Sbjct: 168 LVNELTFTARKMMADEALDSGLVSRV 193

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 31/208 (14%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS- 129
           G V+++T++ P  + N+L++ ++S+  +    I  D  IR+A I++G    +  G D+S 
Sbjct: 17  GPVVILTMNRPHRR-NALSTNMVSQFAAAWDEIDHDDGIRAA-ILTGAGSAYCVGGDLSD 74
Query: 130 -MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
             +    +A  +   +     +LS   +  KP++AA++G+CLGGG E+      R     
Sbjct: 75  GWMVRDGSAPPLDPATIGKGLLLSHTLT--KPLIAAVNGACLGGGCEMLQQTDIR----- 127
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
                              V D+    GLPEV  GL+PGAG   RL +       ++M L
Sbjct: 128 -------------------VSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMIL 168
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLN 276
           TG+ L A +A   G+V  +V P G  L+
Sbjct: 169 TGEPLTAFEAYHFGLVGHVV-PAGTALD 195

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 37/206 (17%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL V L+ P  K N++N     E+     +I  D+  R AV+ISG    F AG D+  +A
Sbjct: 41  VLHVQLNRPN-KRNAMNKVFWREMVECFNKISRDADCR-AVVISGAGKMFTAGIDLMDMA 98
Query: 133 A----------CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHY 182
           +           + +  ++ I    Q+  + IE  PKP++AA+ G C+GGG+++  AC  
Sbjct: 99  SDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDI 158
Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
           R   +D                            + EV +GL    G  QRLPK+    +
Sbjct: 159 RYCAQD------------------------AFFQVKEVDVGLAADVGTLQRLPKVIGNQS 194
Query: 243 VLD-MTLTGKTLKADKAKKMGIVDQL 267
           +++ +  T + + AD+A   G+V ++
Sbjct: 195 LVNELAFTARKMMADEALGSGLVSRV 220

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 43/205 (20%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  V ++ P  + N++N    + + S       D S  S  ++ G  G F AGAD   
Sbjct: 16  GPVTTVIINRPQAR-NAVNGPTAAALYSAFAEFDRDESA-SVAVLCGNGGTFCAGAD--- 70
Query: 131 LAACKTADQVKQISKSG-------QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           L A  TA +   + ++G       + +LS      KP++AA+SG  + GGLE+AL C  R
Sbjct: 71  LKAFGTA-EANAVHRTGPGPMGPSRMMLS------KPVIAAVSGYAVAGGLELALWCDLR 123
Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
           +A +D   G               V  ++ G+ L +         GGT RLP+L      
Sbjct: 124 VAEQDAVFG---------------VFCRRWGVPLID---------GGTVRLPRLIGHSRA 159
Query: 244 LDMTLTGKTLKADKAKKMGIVDQLV 268
           +DM LTG+ ++AD+A  +G+ +++V
Sbjct: 160 MDMILTGRAVQADEALAIGLANRVV 184

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G+V ++T+D P  + N++N  V + +   L   Q D  + + VI       F AGAD+  
Sbjct: 23  GNVALITIDRPDAR-NAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKA 81
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           ++  +     +         +       KP +AA++G+ LGGG E+ALA           
Sbjct: 82  ISRGENLYHAEHPEWGFAGYVHHF--IDKPTIAAVNGTALGGGSELALAS---------- 129
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                 ++ +AC        +    GLPEV  GL+ GAGG  R+ +       L++ LTG
Sbjct: 130 ------DLVIAC--------ESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTG 175
Query: 251 KTLKADKAKKMGIVDQLV 268
           + + A  A + G+++++V
Sbjct: 176 EPMTASDALRWGLINEVV 193

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 33/228 (14%)
Query: 48  MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS 107
           MG   AQT+   + +    ++   ++ +VTL+ P  ++N++  +VM   + +L  I  D+
Sbjct: 9   MGTLEAQTQGPGSMSFVLVDRPRPEIALVTLNRPE-RMNAMAFDVMLPFKQMLVDISHDN 67
Query: 108 SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ--ISKSGQQILSEI----ESSPKPI 161
            +R AV+I+G    F +GAD            + Q  I+    ++L E+        +P+
Sbjct: 68  DVR-AVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPV 126
Query: 162 VAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221
           +AAI+G+ +GGGL +ALAC  R+A +D              ++R        GL   E+ 
Sbjct: 127 IAAINGAAIGGGLCLALACDVRVASQD-------------AYFR--AAGINNGLTASELG 171
Query: 222 LG-LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 268
           L  LLP A GT R           D+ LTG+ + AD+A+++G+V + V
Sbjct: 172 LSYLLPRAIGTSRAS---------DIMLTGRDVDADEAERIGLVSRKV 210

>pdb|2W3P|A Chain A, Boxc Crystal Structure Length = 556

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 29/199 (14%)
Query: 79  DSPGVKVNSLNSEVMSEIQSILRRIQSDS-SIRSAVIISGKPGCFIAGADISMLAACKTA 137
           D   +K+NS +  V  E+   ++RI+ +   +R+ V+ S K   F +GA+I ML     A
Sbjct: 46  DGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHA 105
Query: 138 DQVKQISKSGQQILSEIESSPKP----IVAAISGSCLGGGLEVALACHYRIAVKDKKTGL 193
            +V    K   +  + +E S +      +AA++G+C GGG E+ALAC     V D+ + +
Sbjct: 106 WKV-NFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSV 164
Query: 194 GLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRL-PKLTALPNVLDMTLT-GK 251
            LPEV L                     LG+LPG GG  R+  K     +  D+  T  +
Sbjct: 165 SLPEVPL---------------------LGVLPGTGGLTRVTDKRKVRHDRADIFCTVVE 203
Query: 252 TLKADKAKKMGIVDQLVEP 270
            ++ ++AK   +VD++V+P
Sbjct: 204 GVRGERAKAWRLVDEVVKP 222

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 106/235 (45%), Gaps = 34/235 (14%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
            D L +TLD P  K N L++E+ + +   +R   +++SI S ++ S     F +G  +  
Sbjct: 12  NDALYITLDYPEKK-NGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLED 70
Query: 131 LAACKTADQ----VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
           L  C  +DQ    ++++       + EI +SPK  VA I+G   GGG  + LAC  RIA+
Sbjct: 71  LLIC-ASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIAL 129
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
           +  K      +                        +G+ P  G +  LP++      +++
Sbjct: 130 RRAKFLENFHK------------------------MGISPDLGASYFLPRIIGYEQTMNL 165
Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
            L GK   +++A ++G++ ++ E         +ER   YL+ V+      +A+ K
Sbjct: 166 LLEGKLFTSEEALRLGLIQEICE----NKQELQERVKNYLKAVSEGYVPAIAATK 216

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 34/229 (14%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V VV L+ P  + N L+ E    +   L  +++D  +R AV+++G+   F AGAD++ 
Sbjct: 7   GHVAVVFLNDPERR-NPLSPEXALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAF 64
Query: 131 LAACKT--ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
           L       A++  + S S  ++   + + PKP VAA++G  + GG  +ALAC        
Sbjct: 65  LERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACD------- 117
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
                            +VV D++  LG  EV +G +  A  +  L +        D+ L
Sbjct: 118 -----------------LVVXDEEARLGYTEVKIGFV-AALVSVILVRAVGEKAAKDLLL 159
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL 297
           TG+ ++A +AK +G+V+++  P G  L    E      EEVA N  + L
Sbjct: 160 TGRLVEAREAKALGLVNRIAPP-GKAL----EEAKALAEEVAKNAPTSL 203

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 85  VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144
           VNSL+ E ++E+   L ++++D S R  ++ S +PG F AG D++ +   ++        
Sbjct: 25  VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG-RSPAHYAGYW 83
Query: 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHY 204
           K+ Q++   +  S   +V+AI+G+C  GG  VAL C YRI   + +  +GL E  L    
Sbjct: 84  KAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIA 143
Query: 205 RIVVKD 210
              +KD
Sbjct: 144 PFWLKD 149

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 27/208 (12%)
Query: 62  TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
            +H +E+  G ++V+ ++    K NSL+  ++  +   +  ++SD  +R+ +I S  PG 
Sbjct: 12  VRHLEEENRG-IVVLGINRAYGK-NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGI 69
Query: 122 FIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACH 181
           F AGAD+   A   +++    +SK  + ++++I + P P +AAI G  LGGGLE+ALAC 
Sbjct: 70  FCAGADLKERAKMSSSEVGPFVSKI-RAVINDIANLPVPTIAAIDGLALGGGLELALACD 128
Query: 182 YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALP 241
            R+A    K                        +GL E  L ++PG GGTQRLP+   + 
Sbjct: 129 IRVAASSAK------------------------MGLVETKLAIIPGGGGTQRLPRAIGMS 164
Query: 242 NVLDMTLTGKTLKADKAKKMGIVDQLVE 269
              ++  + + L   +AK +G++  ++E
Sbjct: 165 LAKELIFSARVLDGKEAKAVGLISHVLE 192

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 33/224 (14%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G  L+VT++ P  + N+L+ E+M  +     R+ +D  IR   I++G  G F AG D+  
Sbjct: 28  GHTLIVTMNRPSRR-NALSGEMMQIMVEAWDRVDNDPDIR-CCILTGAGGYFCAGMDLKA 85
Query: 131 LAACKTADQVKQISKSGQQILSEIESS--PKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
                  D  K  S    +I + ++     KP++AA+ G  + GG E+      R+A + 
Sbjct: 86  ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAES 145
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
            K                         G+ E    L P  G   RL +        D+ L
Sbjct: 146 AK------------------------FGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLL 181
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
           TG+ + A +AK+MG+V  +V P G  L     + +E  E +A N
Sbjct: 182 TGRHITAAEAKEMGLVGHVV-PDGQALT----KALEIAEIIAAN 220

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 85  VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS 144
           VNSL+ E ++E    L ++++D SIR  ++ S +PG F AG D+ M    +      +  
Sbjct: 26  VNSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDL-MEMYGRNPAHYAEYW 84
Query: 145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHY 204
           K+ Q++   +  S   +++AI+G+   GG  +AL C YRI   + K  +GL E  L    
Sbjct: 85  KAVQELWLRLYLSNLTLISAINGASPAGGCLMALTCDYRIMADNSKYTIGLNESLLGIVA 144
Query: 205 RIVVKDK 211
              +KD 
Sbjct: 145 PFWLKDN 151

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 48/258 (18%)
Query: 48  MGLFRAQTECKKNSTKHFKEKAV------GDVLVVTLDSPGVKVNSLNSEVMSEIQSILR 101
           MG   AQT+   + +    + AV      G V ++T +    ++N+   ++ +   + + 
Sbjct: 9   MGTLEAQTQGPGSMSAADAQDAVLYEATPGGVAIITFNRAD-RLNAWGPDLAAGFYAAID 67
Query: 102 RIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEI--ESSP- 158
           R ++D  IR  ++++G+   F AGA +    A    D  K ++K+    L+++  E  P 
Sbjct: 68  RAEADPGIR-VIVLTGRGRGFCAGAYLGSADAAAGYD--KTMAKAKDANLADLVGERPPH 124
Query: 159 ------KPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKK 212
                 KP++AAI+G C+G GL  AL C  R A    K         L   + I      
Sbjct: 125 FVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGI------ 178
Query: 213 TGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLG 272
                             +  LP+LT+    LD+ L+G+T  A++A ++G+V ++V P  
Sbjct: 179 ------------------SWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-- 218
Query: 273 PGLNHPEERTMEYLEEVA 290
                   R +EY E++A
Sbjct: 219 ---EQLMPRALEYAEDIA 233

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 41/209 (19%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VLV+ L+ P  K N+ +  ++ E+   L   ++D+ +R+AV+    P  F AG D++ 
Sbjct: 17  GYVLVIGLNRPA-KRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLAS 74
Query: 131 LAA-------CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           +AA             +      G+Q+        KP++ A+ G  L  G+E+ALA    
Sbjct: 75  VAAEIQGGASLTPEGGINPWQVDGRQL-------SKPLLVAVHGKVLTLGIELALAAD-- 125
Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
                                 IV+ D+       EV  G+ P  G T R P+     N 
Sbjct: 126 ----------------------IVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNA 163
Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLG 272
           +   LT  T  A +A ++GIV ++V P+G
Sbjct: 164 MRWMLTADTFDAVEAHRIGIVQEIV-PVG 191

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 32/198 (16%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +L++T++ P  K NS+N+ V   +   + R+ +D+ + S  I++G  G F AG D+   A
Sbjct: 25  ILIITINRPKAK-NSVNAAVSRALADAMDRLDADAGL-SVGILTGAGGSFCAGMDLKAFA 82
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
                 + + +   G+ +        KP++AA+ G  L GG E+ALA    +A +D    
Sbjct: 83  ------RGENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARD---- 132
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                               +  G+PEV  GL+ G GG  RLP+       +++ LTG  
Sbjct: 133 --------------------SAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDN 172
Query: 253 LKADKAKKMGIVDQLVEP 270
           L A++A  +G+V+ L EP
Sbjct: 173 LSAERAHALGMVNVLAEP 190

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 34/204 (16%)
Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           EKA G V  V L+ P  + N+++    + + +      +D    S  ++ G  G F AGA
Sbjct: 16  EKA-GPVTTVILNRPHAR-NAVDGPTAAALLAAFTEFDADPEA-SVAVLWGDNGTFCAGA 72
Query: 127 DISMLAACKTADQVKQISKSGQQIL--SEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
           D+  +      D+  ++   G   +  S +  S KP++AAISG  + GG+E+AL C  R+
Sbjct: 73  DLKAMGT----DRGNELHPHGPGPMGPSRLRLS-KPVIAAISGHAVAGGIELALWCDLRV 127
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
             +D   G               V  ++ G+ L +         GGT RLP+L      +
Sbjct: 128 VEEDAVLG---------------VFCRRWGVPLID---------GGTIRLPRLIGHSRAM 163
Query: 245 DMTLTGKTLKADKAKKMGIVDQLV 268
           D+ LTG+ + A++A  +G+V+++V
Sbjct: 164 DLILTGRPVHANEALDIGLVNRVV 187

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 44/227 (19%)
Query: 76  VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK 135
           + LD+P   VN + + +M E++++L  +  DSS+R  V  S  P  F+A  D+ +    +
Sbjct: 22  IILDNP--PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRI---GE 76
Query: 136 TADQVKQISKSG-------QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
             D +++++ S        Q +   I   P+  +  ++G   GGG E             
Sbjct: 77  KMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEF------------ 124
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
                      +A         +  GLG  E ++G++PG GGTQ L         L++ L
Sbjct: 125 -----------VAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVL 173
Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS 295
           T     A+ A   G +++ +         P +   EY++ VA N A+
Sbjct: 174 TADLFDAETAASYGWINRAL---------PADELDEYVDRVARNIAA 211

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 48  MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS 107
           MG   AQT+    S   F    V D  + TL       N++  +V  EI +    +    
Sbjct: 9   MGTLEAQTQ-GPGSMNEFV-SVVADQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRD 66
Query: 108 SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167
            I  AV++ G    F AG D+  L     A +    ++   + +  + + PKP VAA++G
Sbjct: 67  DI-GAVVLFGGHEIFSAGDDMPELRTLN-APEADTAARVRLEAIDAVAAIPKPTVAAVTG 124
Query: 168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG 227
             LG GL +ALA  +R++  + K                         G  E++ GL+PG
Sbjct: 125 YALGAGLTLALAADWRVSGDNVK------------------------FGATEILAGLIPG 160
Query: 228 AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
            GG  RL ++       ++  +G+   A++A  +G++D +V P
Sbjct: 161 GGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAP 203

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 14/142 (9%)
Query: 48  MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS 107
           MG   AQT+   +     + +AV   L + L  P  + N+LNS+++ E+   +R+   D 
Sbjct: 9   MGTLEAQTQGPGSMIGITQAEAV---LTIELQRP-ERRNALNSQLVEELTQAIRKA-GDG 63
Query: 108 SIRSAVIISGKPGCFIAGADISMLA-ACKTADQVKQISKSGQQILSEIESSPKPIVAAIS 166
           S R A++++G+   F AGAD+S  A A    D++ ++ K+       +++SP P+V AI+
Sbjct: 64  SAR-AIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKA-------MDASPMPVVGAIN 115
Query: 167 GSCLGGGLEVALACHYRIAVKD 188
           G  +G GL++A+ C  R+   D
Sbjct: 116 GPAIGAGLQLAMQCDLRVVAPD 137

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 35/228 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V V+TL  P  + NS   E+  ++ +  +R+  D ++R  ++++G P  F +GA IS  A
Sbjct: 17  VAVLTLHGPSTR-NSFTVELGRQLGAAYQRLDDDPAVR-VIVLTGAPPAFCSGAQISAAA 74
Query: 133 ACKTADQVKQISKSGQQILS-EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
               A +    S S  Q  + E+ +   P++AA++G  +G G+ +AL    RI  ++ + 
Sbjct: 75  ETFAAPRNPDFSASPVQPAAFELRT---PVIAAVNGHAIGIGMTLALHADIRILAEEGR- 130
Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
                                    +P+V  G+ P A     LP+L       ++ LTG 
Sbjct: 131 -----------------------YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGA 167
Query: 252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           +  A +A + G+ ++ + P G  L       +    ++A N A + A+
Sbjct: 168 SFSAQRAVETGLANRCL-PAGKVLG----AALRMAHDIATNVAPESAA 210

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 33/197 (16%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VL + LD P  K+N++++ ++ E+   +R  ++D S+R AV+++G    F +G D++ 
Sbjct: 14  GAVLRIRLDRP-EKLNAVDTPMLEELSVHIRDAEADESVR-AVLLTGAGRAFCSGGDLTG 71
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
                 AD   ++ ++       I S PKP++A + G+ +G G  +ALAC   +A     
Sbjct: 72  GDTAGAADAANRVVRA-------ITSLPKPVIAGVHGAAVGFGCSLALACDLVVA----- 119
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                   A A ++++               +GL+P  G +  LP L        M +T 
Sbjct: 120 --------APASYFQLAF-----------TRVGLMPDGGASALLPLLIGRARTSRMAMTA 160
Query: 251 KTLKADKAKKMGIVDQL 267
           + + A  A + G++  +
Sbjct: 161 EKISAATAFEWGMISHI 177

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 119/307 (38%), Gaps = 64/307 (20%)
Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           S +  K +  G VL  T ++P   +N +  EV+ ++ ++L  +   ++ R  +  S    
Sbjct: 6   SYETIKARLDGTVLSATFNAP--PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADAD 63
Query: 121 CFIAGADISMLAACKTADQVKQISKSGQ-------QILSEIESSPKPIVAAISGSCLGGG 173
            F    D++     K  +   + +K+G         +  ++   P   +A + G   G G
Sbjct: 64  FFFPHVDMT-----KVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAG 118
Query: 174 LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR 233
            E  LAC  R A ++                          LG PEV +G  PGAG  Q 
Sbjct: 119 SEFLLACDMRFASRENAI-----------------------LGQPEVGIGAPPGAGAIQH 155
Query: 234 LPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNT 293
           L +L      L+  LT     AD A++ G V++ V         P+    E++  +A   
Sbjct: 156 LTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAV---------PDAELDEFVAGIAARM 206
Query: 294 A----SQLASGKLKINRIKPMIPDKV-LDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAP 348
           +      L + K  IN I    P +V  D AL  + VR        EKV + +  L+   
Sbjct: 207 SGFPRDALIAAKSAINAISLPAPAEVRADAALFQQLVRG-------EKVQQRTAELF--- 256
Query: 349 LKSKQGL 355
              KQG 
Sbjct: 257 ---KQGF 260

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 42/236 (17%)
Query: 65  FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIA 124
            KE+  G VLV+TL+ P  K+N++  E++  + + L+  + D  +R A++++G    F A
Sbjct: 3   LKERQDG-VLVLTLNRPE-KLNAITGELLDALYAALKEGEEDREVR-ALLLTGAGRAFSA 59
Query: 125 GADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
           G D++     K  D    + +   +++  +    KP+V A++G   G G+ +AL    R+
Sbjct: 60  GQDLTEFGDRKP-DYEAHLRRY-NRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRL 117
Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
           A             A+   +               V +GL+P +G +  LP+L  L    
Sbjct: 118 A-------------AVGASFTTAF-----------VRIGLVPDSGLSFLLPRLVGLAKAQ 153
Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           ++ L    L A++A  +G+V ++V         P E+ ME     A++ A +LA G
Sbjct: 154 ELLLLSPRLSAEEALALGLVHRVV---------PAEKLMEE----ALSLAKELAQG 196

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 42/219 (19%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  +TL+SP  + N+L++ ++S++   LR   SD ++R  V+++   G F AGAD+S 
Sbjct: 19  GPVARLTLNSPHNR-NALSTALVSQLHQGLRDASSDPAVR-VVVLAHTGGTFCAGADLSE 76
Query: 131 LAA----CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
             +        D   + ++    ++  I  S  P++AAI G    GG  +  AC      
Sbjct: 77  AGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACD----- 131
Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
                              I V   ++   L E  +G+ P       LPKL+A       
Sbjct: 132 -------------------IAVAGPRSSFALTEARIGVAPAIISLTLLPKLSARAAA-RY 171
Query: 247 TLTGKTLKADKAKKMGI-----------VDQLVEPLGPG 274
            LTG+   A +A+++G+           +DQLV  +G G
Sbjct: 172 YLTGEKFDARRAEEIGLITMAAEDLDAAIDQLVTDVGRG 210

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 42/219 (19%)
Query: 86  NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK----TADQVK 141
           N+L+ + M E+   L R + D S+  AV+I+G    F AG  +  +   K      D  +
Sbjct: 25  NALSVKAMQEVTDALNRAEEDDSV-GAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFR 83
Query: 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALA 201
             +   QQ++ +I    +P++AAI+G   GGGL ++LA    I     K           
Sbjct: 84  IAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAK---------FV 134
Query: 202 CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 261
           C +  +               G+      +  L ++  +   +++ LT +TL  ++AK  
Sbjct: 135 CAWHTI---------------GIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDW 179
Query: 262 GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           G+V ++         +P++       EVA   A +LA+ 
Sbjct: 180 GLVSRV---------YPKDE----FREVAWKVARELAAA 205

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 29/198 (14%)
Query: 76  VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK 135
           + L +   + NSLN EVM E+QS L    +D S    V++S     F  G D        
Sbjct: 18  ILLSTKSSENNSLNPEVMREVQSALSTAAADDS--KLVLLSAVGSVFCCGLDFIYFIRRL 75
Query: 136 TADQVKQISKSGQQILSEIESS---PKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           T D+ ++ +K  + I + + +     KPI+ A++G  +G G  +   C            
Sbjct: 76  TDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD----------- 124
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                        +V  ++K     P    G  P    T   PK+    +  +M L+G+ 
Sbjct: 125 -------------VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRK 171
Query: 253 LKADKAKKMGIVDQLVEP 270
           L A +A   G+V Q+  P
Sbjct: 172 LTAQEACGKGLVSQVFWP 189

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 84/218 (38%), Gaps = 37/218 (16%)
Query: 62  TKHFKEKAVGDVLV--------VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAV 113
           T++   ++  DVL+        +TL  P   +N+L    + EI + LR    D  +   V
Sbjct: 15  TENLYFQSXSDVLIRKVRRAGRITLSRP-AALNALTCAXVQEIDAALRGWIGDPEVELVV 73
Query: 114 IISGKPGCFIAGADISMLAACKTA-DQV--KQISKSGQQILSEIESSPKPIVAAISGSCL 170
           I +  P  F AG DI+ L     A D    +   +   +    I + PKPIV+   G   
Sbjct: 74  IDAEGPRAFCAGGDIAELHGRGVAGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGFTX 133
Query: 171 GGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG 230
           GGG                        V L CH R  +  + + +  PE  +GL+P  GG
Sbjct: 134 GGG------------------------VGLGCHARHRIVGETSQISXPECAIGLVPDVGG 169
Query: 231 TQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 268
           T  L +      V  + LTG       A   G  D+ V
Sbjct: 170 THLLARAPGRIGVW-LGLTGARXGPGDAIFAGFADRFV 206

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 45/226 (19%)
Query: 48  MGLFRAQTECKKNSTKHF-----KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRR 102
           MG   AQT+   + T        +E+    V  +TL+ P  + N+L++ +       L  
Sbjct: 9   MGTLEAQTQGPGSMTDEILLSNTEER----VRTLTLNRPQAR-NALSAALRDRFFGALAD 63
Query: 103 IQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIV 162
            ++D  +   VII+G    F AG D+  L            S +   I     +  KP++
Sbjct: 64  AETDDDV-DVVIITGADPVFCAGLDLKELGG----------SSALPDISPRWPALTKPVI 112
Query: 163 AAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222
            AI+G+ + GGLE+AL C   IA ++ +            H R+                
Sbjct: 113 GAINGAAVTGGLELALYCDILIASENARFA--------DTHARV---------------- 148
Query: 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 268
           GLLP  G + RLP+   +     M+LTG  L A  A + G+V ++V
Sbjct: 149 GLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVV 194

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 48  MGLFRAQTECKKNSTKHF--KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQS 105
           MG   AQT+   + ++    +++    V+ +TL+ P    N+L+  +++ +      +  
Sbjct: 9   MGTLEAQTQGPGSMSEPLLLQDRDERGVVTLTLNRPQA-FNALSEAMLAALGEAFGTLAE 67
Query: 106 DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI 165
           D S+R AV+++     F AG D+  + A  + +  +++      ++  I+  P P++A +
Sbjct: 68  DESVR-AVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARV 126
Query: 166 SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL 225
            G     G ++   C   +A +D +  +    V L C                       
Sbjct: 127 HGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCS---------------------T 165
Query: 226 PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP 270
           PG   ++ + +  A     +M +TG+ + AD AK +G+V+++V P
Sbjct: 166 PGVALSRNVGRKAAF----EMLVTGEFVSADDAKGLGLVNRVVAP 206

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 42/219 (19%)
Query: 86  NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK----TADQVK 141
           N+L+ + M E+   L R + D S+  AV+I+G    F AG  +  +   K      D  +
Sbjct: 25  NALSVKAMQEVTDALNRAEEDDSV-GAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFR 83
Query: 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALA 201
             +    Q++ +I    +P++AAI+G   GGGL ++LA    I     K           
Sbjct: 84  IAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAK---------FV 134
Query: 202 CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 261
           C +  +               G+      +  L ++  +   +++ LT +TL  ++AK  
Sbjct: 135 CAWHTI---------------GIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDW 179
Query: 262 GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           G+V ++         +P++       EVA   A +LA+ 
Sbjct: 180 GLVSRV---------YPKDE----FREVAWKVARELAAA 205

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 31/227 (13%)
Query: 48  MGLFRAQTE----CKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRI 103
           MG   AQT+       +       +A G + ++TL+ P   +NS+N ++   +  + +R+
Sbjct: 9   MGTLEAQTQGPGSMVYDMPTEIDVRADGALRIITLNRPD-SLNSVNDDLHVGLARLWQRL 67
Query: 104 QSDSSIRSAVIISGKPGCFIAGADISMLAACKT-ADQVKQISKSGQQILSEIESSPKPIV 162
             D + R+AVI +G    F AG D   L      AD   +  + G++I+  +     P+V
Sbjct: 68  TDDPTARAAVI-TGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVV 126
Query: 163 AAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML 222
           AA++G  +G                     LG   VAL+    IV   +   L  P V +
Sbjct: 127 AAVNGPAVG---------------------LGCSLVALS---DIVYIAENAYLADPHVQV 162
Query: 223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269
           GL+   GG    P   +L    +  LTG  + A +A ++G+ + + +
Sbjct: 163 GLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVAD 209

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 42/219 (19%)
Query: 86  NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK----TADQVK 141
           N+L+ + M E+   L R + D S+  AV+I+G    F AG  +  +   K      D  +
Sbjct: 25  NALSVKAMQEVTDALNRAEEDDSV-GAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFR 83
Query: 142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALA 201
             +    Q++ +I    +P++AAI+G   GGGL ++LA    I     K           
Sbjct: 84  IAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAK---------FV 134
Query: 202 CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKM 261
           C +  +               G+      +  L ++  +   +++ LT +TL  ++AK  
Sbjct: 135 CAWHTI---------------GIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDW 179
Query: 262 GIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           G+V ++         +P++       EVA   A +LA+ 
Sbjct: 180 GLVSRV---------YPKDE----FREVAWKVARELAAA 205

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 36/196 (18%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V  +TL+ P  + N+L++ +       L   ++D  +   VII+G    F AG D+  L 
Sbjct: 18  VRTLTLNRPQAR-NALSAALRDRFFGALADAETDDDV-DVVIITGADPVFCAGLDLKELG 75
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
                      S +   I     +  KP++ AI+G+ + GGLE+AL C   IA ++ +  
Sbjct: 76  G----------SSALPDISPRWPALTKPVIGAINGAAVTGGLELALYCDILIASENARFA 125
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                     H R+                GLLP  G + RLP+   +     M+LTG  
Sbjct: 126 --------DTHARV----------------GLLPTWGLSVRLPQKVGIGLARRMSLTGDY 161
Query: 253 LKADKAKKMGIVDQLV 268
           L A  A + G+V ++V
Sbjct: 162 LSAADALRAGLVTEVV 177

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 34/248 (13%)
Query: 75  VVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADISMLAA 133
           V+TL+ P   +N+L    + +I   L++ + D      +II G  G  F AG DI +++ 
Sbjct: 18  VITLNRPKF-LNALTLNXIRQIYPQLKKWEQDPET-FLIIIKGAGGKAFCAGGDIRVISE 75
Query: 134 CKTADQ--VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
            + A Q       +    + + + S  KP VA I G   GGG                  
Sbjct: 76  AEKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGG------------------ 117
Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
                 V L+ H +  V  +K     PE  +GL P  GG   LP+L        + LTG 
Sbjct: 118 ------VGLSVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQGKLGYF-LALTGF 170
Query: 252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS--GKLKINRIKP 309
            LK     + GI    V+     L   EE  +        N AS L +   + KI+R K 
Sbjct: 171 RLKGRDVYRAGIATHFVD--SEKLAXLEEDLLALKSPSKENIASVLENYHTESKIDRDKS 228
Query: 310 MIPDKVLD 317
            I ++  D
Sbjct: 229 FILEEHXD 236

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 115/258 (44%), Gaps = 42/258 (16%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V+ +TL+ P  ++NS N E+ +++   L++++ D +IR  ++++G    F AG D++   
Sbjct: 25  VMTLTLNRPE-RLNSFNDEMHAQLAECLKQVERDDTIR-CLLLTGAGRGFCAGQDLNDRN 82
Query: 133 ACKTA---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
              T    D    + +    ++  +   PKP++ A++G   G G  +AL     IA +  
Sbjct: 83  VDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSA 142
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
           K  +   +                        LGL+P  GGT  LP++      + + L 
Sbjct: 143 KFVMAFSK------------------------LGLIPDCGGTWLLPRVAGRARAMGLALL 178
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG----KLKIN 305
           G  L A++A + G++ Q+V+         +E   +  +++A + A+Q   G    K  IN
Sbjct: 179 GNQLSAEQAHEWGMIWQVVD---------DETLADTAQQLARHLATQPTFGLGLIKQAIN 229
Query: 306 RIKPMIPDKVLDVALKFE 323
             +    D  LD+   ++
Sbjct: 230 SAETNTLDTQLDLERDYQ 247

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           E+   +V V+TLD P  K N  +  + + ++  L R  +D S+R+ V+  G    F AG 
Sbjct: 4   EENSDEVRVITLDHPN-KHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGG 62
Query: 127 DISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
           D + +     ++ +++       +   + +  KP +AA+ G  +G G + AL    R+
Sbjct: 63  DFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRL 120

>pdb|3LAO|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas Aeruginosa Pa01 Length = 258

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 33/221 (14%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G + ++ LD  G K N+ +S  ++++       +     R AV+ +     F AG D+  
Sbjct: 20  GHLFLIGLDRAG-KRNAFDSAXLADLALAXGEYERSEESRCAVLFAHGE-HFTAGLDLXE 77
Query: 131 LAACKTADQVKQISKSGQQILSEIE-SSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
           LA  K A    +    G      ++    KP+V A+ G+C   G+E+ L           
Sbjct: 78  LAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELXLNAD-------- 128
Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                           I V  + T     EV+ G+ P  G T R P+     +     LT
Sbjct: 129 ----------------IAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAXRYILT 172
Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA 290
           G    AD+A +  ++ ++VEP G  L     R +EY E +A
Sbjct: 173 GDEFDADEALRXRLLTEVVEP-GEELA----RALEYAERIA 208

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 36/196 (18%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V  +TL+ P  + N+L++E+ S     L   Q+D  +   ++    P  F AG D+  L 
Sbjct: 19  VRTLTLNRPQSR-NALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLKELG 76
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
                 ++  IS     +        KP++ AI+G+ + GGLE+AL C   IA ++ K  
Sbjct: 77  DTT---ELPDISPKWPDM-------TKPVIGAINGAAVTGGLELALYCDILIASENAKFA 126
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
                     H R+                GL+P  G + RLP+   +     M+LTG  
Sbjct: 127 --------DTHARV----------------GLMPTWGLSVRLPQKVGVGLARRMSLTGDY 162
Query: 253 LKADKAKKMGIVDQLV 268
           L A  A + G+V ++V
Sbjct: 163 LSAQDALRAGLVTEVV 178

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 38/224 (16%)
Query: 48  MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS 107
           MG  R ++E +  S +         +  + L +P  K N+L+  ++  +QS +    +DS
Sbjct: 23  MGAGRRESEPRPTSARQLD-----GIRNIVLSNPK-KRNTLSLAMLKSLQSDILH-DADS 75
Query: 108 SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167
           +    +IIS +   F +G D+  L   +  D   ++ ++  +++  I + P P++A ++G
Sbjct: 76  NDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNG 135
Query: 168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL-- 225
                G ++  +C                         I V   K+    P V +GL   
Sbjct: 136 LATAAGCQLVASCD------------------------IAVASDKSSFATPGVNVGLFCS 171
Query: 226 -PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLV 268
            PG    + +P+  A    L+M  TG+ + A +A   G++ ++V
Sbjct: 172 TPGVALARAVPRKVA----LEMLFTGEPISAQEALLHGLLSKVV 211

>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 28/198 (14%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL V LDSPG+  NS+  ++  ++  I   I  D ++R AV++ G+   F +G    ++ 
Sbjct: 30  VLTVVLDSPGL--NSVGPQMHRDLADIWPVIDRDPAVR-AVLVRGEGKAFSSGGSFDLID 86
Query: 133 ACKTADQVK-QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
                 Q + +I +  + ++  + +   P+V+AI G  +G GL VAL     +A +  K 
Sbjct: 87  ETIGDYQGRIRIMREARDLVHNMINCDTPVVSAIRGPAVGAGLVVALLADISVAGRTAK- 145
Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
                           + D  T        LG+  G       P L  +       LT +
Sbjct: 146 ----------------LIDGHT-------KLGVAAGDHAAICWPLLVGMAKAKYYLLTCE 182
Query: 252 TLKADKAKKMGIVDQLVE 269
           TL  ++A+++G+V   V+
Sbjct: 183 TLLGEEAERIGLVSLCVD 200

>pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 162 VAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221
           +A + G+ LGGG E AL+CH                         ++ ++   +GLPEV+
Sbjct: 144 IALVQGNALGGGFEAALSCH------------------------TIIAEEGVMMGLPEVL 179
Query: 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE 280
             L PG G    + +  +      + L G    A++   MG+VD++V P G G+   E+
Sbjct: 180 FDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVV-PRGQGVAAVEQ 237

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 109/252 (43%), Gaps = 52/252 (20%)
Query: 60  NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP 119
           +S    K +  G    +TL+ P   +N+L+  +++E+++     ++D  +   ++++G  
Sbjct: 8   DSFDTIKYEVDGHTATITLNRPDA-LNALSPHMITELRAAYHEAENDDRV-WLLVVTGTG 65
Query: 120 GCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSP------KPIVAAISGSCLGGG 173
             F +GAD+  +         +    +  Q  +  E +P      KP++ A++G C G G
Sbjct: 66  RAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAG 125
Query: 174 LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG---AGG 230
           ++        +   D                 IV+  ++     P V +GL+ G      
Sbjct: 126 MDW-------VTTTD-----------------IVIASEQATFFDPHVSIGLVAGRELVRV 161
Query: 231 TQRLPKLTALPNVLDMTLTGK--TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEE 288
           ++ LP+  A    L M L GK   + A +A ++G++ ++VE          +R +E   E
Sbjct: 162 SRVLPRSIA----LRMALMGKHERMSAQRAYELGLISEIVE---------HDRLLERAHE 208
Query: 289 VA--VNTASQLA 298
           +A  VN+ + LA
Sbjct: 209 IADIVNSNAPLA 220

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  K N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  K N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  K N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  K N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  K N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM-- 130
           +  V L+ P  K N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 131 --LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
             + A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  K N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  + N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPERR-NAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 33/210 (15%)
Query: 64  HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFI 123
           H      G VL + ++ P  K N+L  E+   I   L     +  +R  V++ G    F 
Sbjct: 6   HLNANLEGGVLTLAINRPEAK-NALYGELYLWIAKALDEADQNKDVR-VVVLRGAEHDFT 63
Query: 124 AGADISMLAACKTADQVKQISKSGQQ----ILSEIESSPKPIVAAISGSCLGGGLEVALA 179
           AG D+          Q      +GQ     +L       KP++ A+ G  +G G+ + L 
Sbjct: 64  AGNDMKDFMGFV---QNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ 120
Query: 180 CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA 239
                                     +V  D      +P V LGL P  G +Q L K   
Sbjct: 121 A------------------------DLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAG 156
Query: 240 LPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269
                ++  T K   A+ A + G+V+++VE
Sbjct: 157 YHKAAELLFTAKKFNAETALQAGLVNEIVE 186

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           +  V L+ P  + N+++  +  E+  +L  ++ D +    ++++G    + AG D+    
Sbjct: 19  IAFVILNRPERR-NAMSPTLNREMIDVLETLEQDPAA-GVLVLTGAGEAWTAGMDLKEYF 76
Query: 133 ACKTAD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
               A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I   D
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICA-D 135
Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
           + T                        GL E+  G+ PG   ++ +         L   +
Sbjct: 136 EAT-----------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIM 172
Query: 249 TGKTLKADKAKKMGIVDQLV 268
           TGKT    KA +MG+V++ V
Sbjct: 173 TGKTFGGQKAAEMGLVNESV 192

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 36/217 (16%)
Query: 76  VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGAD--ISMLA 132
           +T++ P V  N+   + ++E+     + + DS+I   +I++G  G  F +G D  +    
Sbjct: 25  ITINRPEVH-NAFRPKTVNEMIDAFTKARDDSNI-GVIILTGAGGKAFCSGGDQKVRGHG 82
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
                D++ +++    Q L  I   PKP++A ++G  +GGG  + + C   IA  +   G
Sbjct: 83  GYVGEDEIPRLNVLDLQRL--IRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFG 140
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
              P+V                        G   G  G   L ++       ++    + 
Sbjct: 141 QTGPKV------------------------GSFDGGYGAGYLARIVGHKKAREIWYLCRQ 176
Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV 289
             A +A +MG+V+++V      L   EE T+++ +E+
Sbjct: 177 YTAQEALEMGLVNKVVP-----LEQLEEETVKWAQEI 208

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 30/211 (14%)
Query: 63  KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
           +H + +    V  VTL  P  K+N+L  E  ++++ +L  +    ++R A++++G+   F
Sbjct: 17  RHLRVEITDGVATVTLARPD-KLNALTFEAYADLRDLLAELSRRRAVR-ALVLAGEGRGF 74
Query: 123 IAGADIS-MLAACKTADQVK--QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALA 179
            +G D+  ++ A  + D  +    ++   Q++  +   P P++AA+ G   G G  +ALA
Sbjct: 75  CSGGDVDEIIGATLSXDTARLLDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALA 134
Query: 180 CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLT 238
             +R+A                        D  T        +GL  G  G    LP++ 
Sbjct: 135 ADFRVA------------------------DPSTRFAFLFTRVGLSGGDXGAAYLLPRVV 170
Query: 239 ALPNVLDMTLTGKTLKADKAKKMGIVDQLVE 269
            L +   +   G T++A +A+++G++ +L E
Sbjct: 171 GLGHATRLLXLGDTVRAPEAERIGLISELTE 201

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 44/266 (16%)
Query: 48  MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS 107
           MG   AQT+    S  +        +  +TL+ P    N+ N E++ E+ +   R   D+
Sbjct: 9   MGTLEAQTQ-GPGSMVYIDYGVADSIATITLNRPEA-ANAQNPELLDELDAAWTRAAEDN 66
Query: 108 SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ---ISKSGQQILS---EIESSPKPI 161
            ++  +I+      F AG D+      +  +++     I    ++ L       + PKP 
Sbjct: 67  EVK-VIILRANGKHFSAGHDLR--GGGEVPEKISLEFIIQHEARRYLDYTLRWRNVPKPS 123
Query: 162 VAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221
           +AA+ G C+ GGL +   C   +A  D    L    VAL             G+G  E  
Sbjct: 124 IAAVQGRCISGGLLLCWPCDLILASDD---ALFSDPVAL------------MGIGGVEYH 168
Query: 222 LGLLPGAGGTQRL-PKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE 280
                  G T  L P+        ++  TG+ L A++A++ G+V+++V       +  + 
Sbjct: 169 -------GHTWELGPR-----KAKEILFTGRALTAEEAERTGMVNRVV-----ARDELDA 211
Query: 281 RTMEYLEEVAVNTASQLASGKLKINR 306
           +T E  E++A      L   K  +N+
Sbjct: 212 QTRELAEQIATMPPFALRQAKRAVNQ 237

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL + LDSPG+  NS+  ++  ++  +   I  D  +R  V++ G+   F +G    ++ 
Sbjct: 24  VLNLVLDSPGL--NSVGPQMHRDLADVWPVIDRDPDVR-VVLVRGEGKAFSSGGSFELID 80
Query: 133 ACKTADQVK-QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKT 191
                 + + +I +  + ++  + +  KP+V+AI G  +G GL VAL     +A    K 
Sbjct: 81  ETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAK- 139
Query: 192 GLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK 251
                           + D  T        LG+  G       P L  +       LT +
Sbjct: 140 ----------------IIDGHT-------KLGVAAGDHAAICWPLLVGMAKAKYYLLTCE 176
Query: 252 TLKADKAKKMGIVDQLVE 269
           TL  ++A+++G+V   V+
Sbjct: 177 TLSGEEAERIGLVSTCVD 194

>pdb|3OT6|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN From Psudomonas Syringae Length = 232

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 75  VVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC 134
           V TL     KVN+++ +V+    + L + + D   R+ VI++G+PG    G D+ +    
Sbjct: 16  VATLTLNNGKVNAISPDVIIAFNAALDQAEKD---RAIVIVTGQPGILSGGYDLKV--XT 70
Query: 135 KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLG 194
            +A+    +   G  +     S P PI+ A  G  +  G  + L+  YRI V    + +G
Sbjct: 71  SSAEAAINLVAQGSTLARRXLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFS-IG 129
Query: 195 LPEV 198
           L EV
Sbjct: 130 LNEV 133

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 41/256 (16%)
Query: 56  ECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVII 115
           +C +       EK+   +  +T++ P V+ N+     + E+   L   + D +I   ++ 
Sbjct: 17  DCSEGFEDIRYEKSTDGIAKITINRPQVR-NAFRPLTVKEMIQALADARYDDNIGVIILT 75
Query: 116 SGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS------EIESSPKPIVAAISGSC 169
                 F +G D  +       D       SG   L+      +I + PKP+VA ++G  
Sbjct: 76  GAGDKAFCSGGDQKV-----RGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYS 130
Query: 170 LGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG 229
           +GGG  + + C   IA  +   G   P+V                        G   G  
Sbjct: 131 IGGGHVLHMMCDLTIAADNAIFGQTGPKV------------------------GSFDGGW 166
Query: 230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV 289
           G   + ++       ++    +   A +A  MG+V+ +V PL       E+ T+ +  E+
Sbjct: 167 GASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVV-PLAD----LEKETVRWCREM 221
Query: 290 AVNTASQLASGKLKIN 305
             N+   L   K  +N
Sbjct: 222 LQNSPMALRCLKAALN 237

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 41/256 (16%)
Query: 56  ECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVII 115
           +C +       EK+   +  +T++ P V+ N+     + E+   L   + D +I   ++ 
Sbjct: 21  DCSEGFEDIRYEKSTDGIAKITINRPQVR-NAFRPLTVKEMIQALADARYDDNIGVIILT 79
Query: 116 SGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS------EIESSPKPIVAAISGSC 169
                 F +G D  +       D       SG   L+      +I + PKP+VA ++G  
Sbjct: 80  GAGDKAFCSGGDQKV-----RGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYS 134
Query: 170 LGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG 229
           +GGG  + + C   IA  +   G   P+V                        G   G  
Sbjct: 135 IGGGHVLHMMCDLTIAADNAIFGQTGPKV------------------------GSFDGGW 170
Query: 230 GTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV 289
           G   + ++       ++    +   A +A  MG+V+ +V PL       E+ T+ +  E+
Sbjct: 171 GASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVV-PLAD----LEKETVRWCREM 225
Query: 290 AVNTASQLASGKLKIN 305
             N+   L   K  +N
Sbjct: 226 LQNSPMALRCLKAALN 241

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  +TL+ P  ++N+   ++ +E+   L++  +D ++R  V+I+G    F AG D+S 
Sbjct: 11  GQVAWLTLNRPD-QLNAFTEQMNAEVTKALKQAGADPNVR-CVVITGAGRAFCAGEDLS- 67
Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
               +  D    +      ++  +    KP+VAA++G+  G G+ +ALAC +R+      
Sbjct: 68  -GVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLL----- 121
Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                               +K       + +GL+P AG    LP+L      L++ + G
Sbjct: 122 -------------------SEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLG 162
Query: 251 K 251
           +
Sbjct: 163 E 163

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 59  KNSTKHFKEKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG 117
           +  T+ + +  V D +  +TL+ P    N+ N E++ E+ +   R   D+ + S +++  
Sbjct: 15  EQRTEMYIDYDVSDRIATITLNRPEA-ANAQNPELLDELDAAWTRAAEDNDV-SVIVLRA 72
Query: 118 KPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESS------PKPIVAAISGSCLG 171
               F AG D+         D++        +    +E S      PKP +AA+ G C+ 
Sbjct: 73  NGKHFSAGHDLR--GGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCIS 130
Query: 172 GGLEVALACHYRIAVKD 188
           GGL +   C   IA +D
Sbjct: 131 GGLLLCWPCDLIIAAED 147

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           V  +TL+ P   +N+ N  +       L     D  + + V+++G    F AG D++ + 
Sbjct: 16  VRTLTLNRPEA-LNAFNEALYDATAQALLDAADDPQV-AVVLLTGSGRGFSAGTDLAEMQ 73
Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
           A  T     +     + ++  +   PKP++ A++G  +G G                 T 
Sbjct: 74  ARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIG----------------ATI 117
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
           LG  ++A               L  P   LG+ P A  +  LP+L    N   + ++ + 
Sbjct: 118 LGYADLAF--------MSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEW 169
Query: 253 LKADKAKKMGIVDQLVEP 270
           + A++A +MG+V ++  P
Sbjct: 170 IDAEEALRMGLVWRICSP 187

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 43/202 (21%)
Query: 76  VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISML---- 131
           + L +   + N+LN+EV+ EI + L    +D S    V+ S     F  G D        
Sbjct: 36  IVLSTRSTEKNALNTEVIKEIVNALNSAAADDS--KLVLFSAAGSVFCCGLDFGYFVKHL 93
Query: 132 ------AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
                 A+ +  D +K    +  Q         KPIV +++G  +G G  +   C     
Sbjct: 94  RNNRNTASLEMVDTIKNFVNTFIQF-------KKPIVVSVNGPAIGLGASILPLCD---- 142
Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
                               +V  ++K     P    G  P    +   PK+    +  +
Sbjct: 143 --------------------LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANE 182
Query: 246 MTLTGKTLKADKAKKMGIVDQL 267
           M + G+ L A +A   G+V Q+
Sbjct: 183 MLIAGRKLTAREACAKGLVSQV 204

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 97/233 (41%), Gaps = 36/233 (15%)
Query: 76  VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADISMLAAC 134
           VT++ P V+ N+   + ++E+     R + D ++ S ++++G+    F +G D       
Sbjct: 26  VTINRPEVR-NAFTPKTVAEMIDAFSRARDDQNV-SVIVLTGEGDLAFCSGGDQKKRGHG 83
Query: 135 KTA--DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTG 192
                DQ+ +++    Q L  I   PKP++A + G  +GGG  + + C   IA  +   G
Sbjct: 84  GYVGEDQIPRLNVLDLQRLIRI--IPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFG 141
Query: 193 LGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKT 252
              P+V                        G      G+  L ++       ++    + 
Sbjct: 142 QTGPKV------------------------GSFDAGYGSGYLARIVGHKKAREIWYLCRQ 177
Query: 253 LKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKIN 305
             A +A  MG+V+ +V      L   E+ T+++ +E+  ++ + L   K  +N
Sbjct: 178 YNAQEALDMGLVNTVVP-----LEKVEDETVQWCKEIMKHSPTALRFLKAAMN 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	6e-90
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	3e-18
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	2e-82
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	2e-16
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	2e-82
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	4e-16
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	7e-59
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-57
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	4e-57
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-15
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	1e-56
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	1e-56
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	2e-56
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	3e-56
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	6e-55
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	1e-54
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	3e-54
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	5e-54
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	8e-54
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	2e-51
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	2e-51
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	4e-51
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	5e-51
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	1e-50
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	2e-50
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	3e-50
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	2e-49
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	3e-49
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	2e-48
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	3e-48
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	3e-48
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	5e-48
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	5e-48
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	6e-48
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	6e-48
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	1e-47
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-47
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-47
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	3e-47
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	3e-47
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	4e-47
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	5e-47
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	1e-46
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	2e-46
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	5e-46
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	3e-45
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	7e-45
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	9e-45
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-44
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	2e-44
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	1e-43
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	1e-43
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	2e-43
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	2e-43
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	5e-43
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	6e-43
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	2e-42
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-41
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	2e-41
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-41
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-40
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	1e-39
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	1e-39
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	1e-39
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	3e-39
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	3e-39
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	6e-39
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	7e-39
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-38
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-37
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-37
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	2e-37
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	2e-36
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	3e-34
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	3e-31
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	2e-18
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	5e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	2e-04

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  284 bits (728), Expect = 6e-90
 Identities = 79/291 (27%), Positives = 129/291 (44%), Gaps = 45/291 (15%)

Query: 63  KHFK-EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
           K          ++ +  D  G  VN  N   ++E++  +  I++D+S++  ++ SGK   
Sbjct: 6   KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DV 64

Query: 122 FIAGADISMLAACKTAD--QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALA 179
           FI GADI+           ++   +    +I S+ E    P VAAI+G  LGGGLE+ LA
Sbjct: 65  FIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLA 124

Query: 180 CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA 239
             +R+     K                        +GLPEV LG+ PG GGT RLP+L  
Sbjct: 125 ADFRVMADSAK------------------------IGLPEVKLGIYPGFGGTVRLPRLIG 160

Query: 240 LPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           + N ++   +GK  +A+ A K+  VD +V               + L   A++   +  S
Sbjct: 161 VDNAVEWIASGKENRAEDALKVSAVDAVVTA-------------DKLGAAALDLIKRAIS 207

Query: 300 GKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
           G+L     +    +K+   A++    +   F  AK  V   +G  YPAP++
Sbjct: 208 GELDYKAKRQPKLEKLKLNAIE----QMMAFETAKGFVAGQAGPNYPAPVE 254

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 1   MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN 60
            +G  YPAP++ +  ++     G     E EA GF++LA T  S  L+GLF    E KK 
Sbjct: 244 QAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKK 303

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  264 bits (677), Expect = 2e-82
 Identities = 84/286 (29%), Positives = 125/286 (43%), Gaps = 49/286 (17%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           E     V V+TL +P   VNSL+ +V+  ++S      S + ++ A++I+G  G F  G 
Sbjct: 12  EVGGDGVAVITLINP--PVNSLSFDVLYNLKSNYEEALSRNDVK-AIVITGAKGRFSGGF 68

Query: 127 DISMLAACKTAD--QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
           DIS     +  +  + K    S   I   +E++ KP VAAI G  LGGGLE+A+ACH RI
Sbjct: 69  DISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARI 128

Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
           +                             LGLPE+ LG++PG GGTQRLP+L  L   L
Sbjct: 129 SAP------------------------AAQLGLPELQLGVIPGFGGTQRLPRLVGLTKAL 164

Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKI 304
           +M LT K +KA++   +G++D +V P               L   A   A  +   +   
Sbjct: 165 EMILTSKPVKAEEGHSLGLIDAVVPP-------------AELVTTARRWALDIVGRRKPW 211

Query: 305 NRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
                    K+  +    E         AK + +K +      PL 
Sbjct: 212 VSSVSKTD-KLPPLGEAREI-----LTFAKAQTLKRAPN-MKHPLM 250

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 22/71 (30%), Positives = 30/71 (42%)

Query: 3   GGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNST 62
                 PL  LD +  GI  GP AG E EAE  SQ+     +KGL+ +F +Q    K   
Sbjct: 242 APNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPG 301

Query: 63  KHFKEKAVGDV 73
              +      +
Sbjct: 302 VTDRGLVPRKI 312

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  264 bits (678), Expect = 2e-82
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 57/298 (19%)

Query: 53  AQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSA 112
           +     + S      +    + ++ L +P   VN+++  V+ E+++ L++  SD +++ A
Sbjct: 11  SSGLVPRGSHMAEYLRLPHSLAMIRLCNP--PVNAVSPTVIREVRNGLQKAGSDHTVK-A 67

Query: 113 VIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGG 172
           ++I G  G F AGADI   +A      +         ++ EI+   KP++AAI G  LGG
Sbjct: 68  IVICGANGNFCAGADIHGFSAFTPGLAL-------GSLVDEIQRYQKPVLAAIQGVALGG 120

Query: 173 GLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232
           GLE+AL CHYRIA                        + K  +GLPEV LG+LPGA GTQ
Sbjct: 121 GLELALGCHYRIA------------------------NAKARVGLPEVTLGILPGARGTQ 156

Query: 233 RLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
            LP++  +P  LD+  +GK L AD+A ++GI+D +V+                  E A+ 
Sbjct: 157 LLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKS--------------DPVEEAIK 202

Query: 293 TASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
            A ++    ++        P ++ +  +      + +F +A  KV K   G   AP  
Sbjct: 203 FAQKIIDKPIE--------PRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPG-VLAPET 251

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 6   YPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS 61
             AP   +  ++  ++     G + E + F  L  + Q+K L   F A+    K S
Sbjct: 246 VLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWS 301

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  190 bits (485), Expect = 7e-59
 Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 42/257 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V V+   +P   VNSL+ E ++E+   L ++++D S R  ++ S +PG F AG D++ 
Sbjct: 13  AGVAVMKFKNP--PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTE 70

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +   ++        K+ Q++   +  S   +V+AI+G+C  GG  VAL C YRI      
Sbjct: 71  MCG-RSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILA---- 125

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                 +              +  +GL E  LG++        L               G
Sbjct: 126 ------DNP------------RYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLG 167

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
                 +A ++GIVDQ+V               E ++  A++  +Q  +         K 
Sbjct: 168 LLFPPAEALQVGIVDQVVPE-------------EQVQSTALSAIAQWMAIPDHARQLTKA 214

Query: 310 MI---PDKVLDVALKFE 323
           M+       L      +
Sbjct: 215 MMRKATASRLVTQRDAD 231

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  186 bits (476), Expect = 2e-57
 Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 44/257 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             + V TL+      N+++S+VM ++  ++ +++ D +IR  V+I G+   F AGADI  
Sbjct: 14  DHIAVATLNHA--PANAMSSQVMHDVTELIDQVEKDDNIR-VVVIHGEGRFFSAGADIKE 70

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
             +   A Q  ++++ GQ     +E   KP++AAI G+ LGGGLE A++CH R A +  K
Sbjct: 71  FTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAK 130

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                   LGLPE+ LGL+PG  GTQRLP+        +M LT 
Sbjct: 131 ------------------------LGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTS 166

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
             +   +A K G+V+ +                E   +  +  A Q+A         +  
Sbjct: 167 TPITGAEALKWGLVNGVFAE-------------ETFLDDTLKVAKQIAGKSPATARAVLE 213

Query: 310 MI---PDKVLDVALKFE 323
           ++           ++ E
Sbjct: 214 LLQTTKSSHYYEGVQRE 230

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  194 bits (493), Expect = 4e-57
 Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 47/304 (15%)

Query: 63  KHFKEKAVGDVLVVTLDSPGV---------KVNSLNSEVMSEIQSILRRIQSD-SSIRSA 112
           KH+K    G V  + +D             K+NS +  V  E+   ++RI+ +   +R+ 
Sbjct: 21  KHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTV 80

Query: 113 VIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIE----SSPKPIVAAISGS 168
           V+ S K   F +GA+I ML    T        K   +  + +E     S    +AA++G+
Sbjct: 81  VLTSLKDRVFCSGANIFMLGLS-THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGA 139

Query: 169 CLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA 228
           C GGG E+ALAC     V D+ + + LPEV L                     LG+LPG 
Sbjct: 140 CAGGGYELALACDEIYLVDDRSSSVSLPEVPL---------------------LGVLPGT 178

Query: 229 GGTQRLPKLTALP--NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL 286
           GG  R+     +            + ++ ++AK   +VD++V+P     N  ++      
Sbjct: 179 GGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKP-----NQFDQAIQARA 233

Query: 287 EEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYP 346
            E+A  +     +  + + RI+        +  L ++ +   I    +            
Sbjct: 234 LELAAQSDRPAHAQGVPLTRIERTD----REDGLTYKTLDVTIDRAKRIATFTAKAPQTE 289

Query: 347 APLK 350
            P  
Sbjct: 290 PPAS 293

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 76.2 bits (187), Expect = 2e-15
 Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 28/269 (10%)

Query: 11  KILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAV 70
            I         +       A+    +++  T +  GL       T  +      F  KA 
Sbjct: 228 AIQARALELAAQSDRPA-HAQGVPLTRIERTDREDGLTYKTLDVTIDRAKRIATFTAKAP 286

Query: 71  GDVLVVTLD---SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGAD 127
                 ++D   + G     L      +   +  R    +         G     +  AD
Sbjct: 287 QTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDAR-HLLAAD 345

Query: 128 ISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI-SGSCLGGGL-EVALACHYRIA 185
            + L   K    V++     ++ L+ I+ S + + A I  GSC  G   E+A A      
Sbjct: 346 -ASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYM 404

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLP-KLTALPNVL 244
                                   D++  + L EV  GL P      RL  +       L
Sbjct: 405 AALPANE-----------------DEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPL 447

Query: 245 DM--TLTGKTLKADKAKKMGIVDQLVEPL 271
           D   +  G+ +K  +A+++G+V    + +
Sbjct: 448 DAVRSRIGQAIKPVEAERLGLVTASPDDI 476

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  184 bits (470), Expect = 1e-56
 Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 45/258 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
             +  + L     K NS + E   E  + +  I+ D  I+  VI+    P  F AGADI+
Sbjct: 17  DGIAEIHLHIN--KSNSYDLEFYKEFNAAIDDIRFDPDIK-VVIVMSDVPKFFSAGADIN 73

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
            L +        Q      + L +I  SP+  +A + G  +GGGLE+ALAC  R      
Sbjct: 74  FLRS-ADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMG--- 129

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                               D+   +GLPEV LG+L G GGTQRL +L      LDM +T
Sbjct: 130 --------------------DEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNIT 169

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIK 308
           G+T+   +A ++G+V+++                    E     A +LA+     ++ IK
Sbjct: 170 GETITPQEALEIGLVNRVFPQ-------------AETRERTREYARKLANSATYAVSNIK 216

Query: 309 PMI---PDKVLDVALKFE 323
             I    +  L+VA+++E
Sbjct: 217 LAIMNGKEMPLNVAIRYE 234

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  185 bits (471), Expect = 1e-56
 Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 45/280 (16%)

Query: 48  MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDS 107
           MG   AQT+   +  +     A   +  + +  P    N++  +V  EI +    +    
Sbjct: 9   MGTLEAQTQGPGSMNEFVSVVADQGLATLVVSRP--PTNAMTRQVYREIVAAADELGRRD 66

Query: 108 SIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG 167
            I  AV++ G    F AG D+  L     A +    ++   + +  + + PKP VAA++G
Sbjct: 67  DIG-AVVLFGGHEIFSAGDDMPELRT-LNAPEADTAARVRLEAIDAVAAIPKPTVAAVTG 124

Query: 168 SCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG 227
             LG GL +ALA  +R++  + K                         G  E++ GL+PG
Sbjct: 125 YALGAGLTLALAADWRVSGDNVK------------------------FGATEILAGLIPG 160

Query: 228 AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLE 287
            GG  RL ++       ++  +G+   A++A  +G++D +V P             + + 
Sbjct: 161 GGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAP-------------DDVY 207

Query: 288 EVAVNTASQLAS-GKLKINRIKPMI---PDKVLDVALKFE 323
           + AV  A +        +   K +I    +         E
Sbjct: 208 DSAVAWARRYLECPPRALAAAKAVINDVFELEATERAAAE 247

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  183 bits (466), Expect = 2e-56
 Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 55/261 (21%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +TL++   KVN+++ +V+    + L + + D   R+ VI++G+PG    G D+ +
Sbjct: 14  DGVATLTLNNG--KVNAISPDVIIAFNAALDQAEKD---RAIVIVTGQPGILSGGYDLKV 68

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +    +A+    +   G  +   + S P PI+ A  G  +  G  + L+  YRI V    
Sbjct: 69  MT--SSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPF 126

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
           +                       +GL EV +G+     G +               +  
Sbjct: 127 S-----------------------IGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINA 163

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KL 302
           +    + A   G +D++V               E L+  A+  A+QL           KL
Sbjct: 164 EMFDPEGAMAAGFLDKVVSV-------------EELQGAALAVAAQLKKINMNAHKKTKL 210

Query: 303 KINRIKPMIPDKVLDVALKFE 323
           K+ +         LD A++ +
Sbjct: 211 KVRK----GLLDTLDAAIEQD 227

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  182 bits (465), Expect = 3e-56
 Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 54/261 (20%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             + V+ +D    KVN L   +   +   +     D+ +  A++I+G    F  G D+ +
Sbjct: 13  DAIGVIRMDDG--KVNVLGPTMQQALNEAIDAADRDN-VG-ALVIAGNHRVFSGGFDLKV 68

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           L +   A     + + G ++   + S PKP+V A +G  +  G  +  +  +R+A     
Sbjct: 69  LTS-GEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYN 127

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                   +   EV +G+       + L                
Sbjct: 128 ------------------------VQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLA 163

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KL 302
           KT   + A   G +D++  P             E +   A   A + A          KL
Sbjct: 164 KTFFGETALAAGFIDEISLP-------------EVVLSRAEEAAREFAGLNQQAHNATKL 210

Query: 303 KINRIKPMIPDKVLDVALKFE 323
           +          K +   +   
Sbjct: 211 RARA----EALKAIRAGIDGI 227

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  180 bits (460), Expect = 6e-55
 Identities = 64/257 (24%), Positives = 116/257 (45%), Gaps = 39/257 (15%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             ++V+ ++    K NSL+  ++  +   +  ++SD  +R+ +I S  PG F AGAD+  
Sbjct: 20  RGIVVLGINRAYGK-NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
            A   ++ +V       + ++++I + P P +AAI G  LGGGLE+ALAC  R+A    K
Sbjct: 79  RAK-MSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK 137

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                   +GL E  L ++PG GGTQRLP+   +    ++  + 
Sbjct: 138 ------------------------MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSA 173

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
           + L   +AK +G++  ++          + +  +     A++ A +    G + +   K 
Sbjct: 174 RVLDGKEAKAVGLISHVL---------EQNQEGDAAYRKALDLAREFLPQGPVAMRVAKL 224

Query: 310 MI---PDKVLDVALKFE 323
            I    +  L   L  E
Sbjct: 225 AINQGMEVDLVTGLAIE 241

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  180 bits (459), Expect = 1e-54
 Identities = 55/259 (21%), Positives = 96/259 (37%), Gaps = 45/259 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VL  T ++P   +N +  EV+ ++ ++L  +   ++ R  +  S     F    D++ 
Sbjct: 16  GTVLSATFNAP--PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTK 73

Query: 131 LAACKTADQVKQ---ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
           +    TA+  K       S   +  ++   P   +A + G   G G E  LAC  R A +
Sbjct: 74  VPE-YTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASR 132

Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
           +                          LG PEV +G  PGAG  Q L +L      L+  
Sbjct: 133 E-----------------------NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAV 169

Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINR 306
           LT     AD A++ G V++ V                 L+E     A++++   +  +  
Sbjct: 170 LTSSDFDADLAERYGWVNRAVPD-------------AELDEFVAGIAARMSGFPRDALIA 216

Query: 307 IKPMI--PDKVLDVALKFE 323
            K  I          ++ +
Sbjct: 217 AKSAINAISLPAPAEVRAD 235

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  178 bits (455), Expect = 3e-54
 Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 46/257 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VL + L+ P  K N+LN  +M+ ++  L  I     IR AV+I G    F AG D+S 
Sbjct: 24  GPVLTIGLNRPK-KRNALNDGLMAALKDCLTDI--PDQIR-AVVIHGIGDHFSAGLDLSE 79

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           L   + A +    S++  ++  +I+    P++AA+ G+ +GGGLE+A A H R+A     
Sbjct: 80  LRE-RDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAY 138

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                     LPE   G+  G GG+ RLP+L  +  + DM LTG
Sbjct: 139 ------------------------YALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTG 174

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
           +   A +    G    L+E                  + A+   +++A    L    +  
Sbjct: 175 RVYSAAEGVVHGFSQYLIEN-------------GSAYDKALELGNRVAQNAPLTNFAVLQ 221

Query: 310 MIP---DKVLDVALKFE 323
            +P   +      L  E
Sbjct: 222 ALPMIAEANPQTGLLME 238

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  178 bits (454), Expect = 5e-54
 Identities = 60/259 (23%), Positives = 96/259 (37%), Gaps = 45/259 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  + LD+P   VN + + +M E++++L  +  DSS+R  V  S  P  F+A  D+ +
Sbjct: 17  HGVARIILDNP--PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRI 74

Query: 131 LAACKTADQVKQISKSG-----QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
                 A Q    S        Q +   I   P+  +  ++G   GGG E   A     A
Sbjct: 75  GEK-MDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFA 133

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
             +                         GLG  E ++G++PG GGTQ L         L+
Sbjct: 134 AAE-----------------------TAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALE 170

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKI 304
           + LT     A+ A   G +++ +               + L+E     A  +A+     I
Sbjct: 171 VVLTADLFDAETAASYGWINRALPA-------------DELDEYVDRVARNIAALPDGVI 217

Query: 305 NRIKPMIPDKVLDVALKFE 323
              K  +P   L   L  E
Sbjct: 218 EAAKRSLPADDLKEGLLGE 236

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  177 bits (451), Expect = 8e-54
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 41/234 (17%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAG 125
           + A   V+ ++L+      NSL+  ++ E+Q+IL +I  +++ R  VI++G     F AG
Sbjct: 13  DYATPHVVKISLNRERQA-NSLSLALLEELQNILTQINEEANTR-VVILTGAGEKAFCAG 70

Query: 126 ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
           AD+   A     +QV+      +  +  +E  P+P++AAI+G  LGGG E++LAC +RIA
Sbjct: 71  ADLKERAG-MNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIA 129

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
            +                           LGL E  L ++PGAGGTQRLP+L  +    +
Sbjct: 130 AESAS------------------------LGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 165

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           +  TG+ + A +AK+ G+V+ +V                 LEE A+  A ++AS
Sbjct: 166 LIYTGRRISAQEAKEYGLVEFVVPV-------------HLLEEKAIEIAEKIAS 206

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  171 bits (435), Expect = 2e-51
 Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 46/257 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V ++ L  P V +N+L+ ++++EI + +     +  +R  ++++G+   F AGADI  
Sbjct: 13  GAVGIIELARPDV-LNALSRQMVAEIVAAVEAFDRNEKVR-VIVLTGRGRAFAAGADIQE 70

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +A      +++ +++        +     P++AA++G  LGGG E+AL+C   +A    +
Sbjct: 71  MAK-DDPIRLEWLNQFAD--WDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    G PEV LG++PGAGGTQRL KL      L+   TG
Sbjct: 128 ------------------------FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTG 163

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
             + A +A+++GIV+++V P             E L E  +  A +LA    L +  IK 
Sbjct: 164 ARMSAKEAEQLGIVNRVVSP-------------ELLMEETMRLAGRLAEQPPLALRLIKE 210

Query: 310 MI---PDKVLDVALKFE 323
            +    D  L   ++FE
Sbjct: 211 AVQKAVDYPLYEGMQFE 227

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  171 bits (436), Expect = 2e-51
 Identities = 70/257 (27%), Positives = 112/257 (43%), Gaps = 46/257 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V ++TL+ P   +N+LNS+VM+E+ S    +  D  I  A+II+G    F AGADI  
Sbjct: 33  QRVGIITLNRPQA-LNALNSQVMNEVTSAATELDDDPDIG-AIIITGSAKAFAAGADIKE 90

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +A           +        ++ +   P +AA++G  LGGG E+A+ C   IA    K
Sbjct: 91  MA---DLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAK 147

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    G PE+ LG+LPG GG+QRL +       +D+ LTG
Sbjct: 148 ------------------------FGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTG 183

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
           +T+ A +A++ G+V ++V               + L   A  TA+ ++          K 
Sbjct: 184 RTMDAAEAERSGLVSRVVPA-------------DDLLTEARATATTISQMSASAARMAKE 230

Query: 310 MI---PDKVLDVALKFE 323
            +    +  L   L +E
Sbjct: 231 AVNRAFESSLSEGLLYE 247

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  170 bits (433), Expect = 4e-51
 Identities = 66/262 (25%), Positives = 111/262 (42%), Gaps = 46/262 (17%)

Query: 66  KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG 125
           K+     V ++ L+ P   +N+L + ++ E+   L   + D ++  A++++G    F AG
Sbjct: 10  KKGKNSSVGLIQLNRPKA-LNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAG 67

Query: 126 ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
           ADI  +            S         I    KP++AA++G  LGGG E+A+ C    A
Sbjct: 68  ADIKEMQ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYA 124

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
            +  +                         G PE++LG +PGAGGTQRL +       ++
Sbjct: 125 GEKAQ------------------------FGQPEILLGTIPGAGGTQRLTRAVGKSLAME 160

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKI 304
           M LTG  + A  AK+ G+V ++                E L E A+  A ++A+  K+ +
Sbjct: 161 MVLTGDRISAQDAKQAGLVSKIFPV-------------ETLVEEAIQCAEKIANNSKIIV 207

Query: 305 NRIKPMI---PDKVLDVALKFE 323
              K  +    +  L    K E
Sbjct: 208 AMAKESVNAAFEMTLTEGNKLE 229

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  170 bits (433), Expect = 5e-51
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 46/261 (17%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
            + V  V ++ LD P   +N+LN  + +E+    R   +D  I  A++++G    F AGA
Sbjct: 14  SRPVAGVGLIRLDRPDA-LNALNQTLEAEVLDAARDFDADLEIG-AIVVTGSERAFAAGA 71

Query: 127 DISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
           DI+ +    T  Q ++  ++       +    KPIVAA++G  LGGG E+A+ C   IA 
Sbjct: 72  DIAEMVT-LTPHQARE--RNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAA 128

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
              +                         G PE+ LG+LPG GGTQRL +       +D+
Sbjct: 129 DTAR------------------------FGQPEITLGILPGLGGTQRLTRAVGKAKAMDL 164

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKIN 305
            LTG++L A++A+++G+V ++V                 L + A+  A ++A   +    
Sbjct: 165 CLTGRSLTAEEAERVGLVSRIVPA-------------ADLLDEALAVAQRIARMSRPAGR 211

Query: 306 RIKPMI---PDKVLDVALKFE 323
            +K  I    ++ L   +++E
Sbjct: 212 AVKDAINEAFERPLSAGMRYE 232

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  169 bits (430), Expect = 1e-50
 Identities = 54/267 (20%), Positives = 95/267 (35%), Gaps = 49/267 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG--CFIAGADI 128
             V V+  +    K+N+L+   + ++   L  +     IR  +I+    G   F AG DI
Sbjct: 12  NKVAVIEFNYGR-KLNALSKVFIDDLMQALSDLNRPE-IR-CIILRAPSGSKVFSAGHDI 68

Query: 129 SMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
             L +    D +       +QI   I+  PKPI++ + GS  GG  E+ ++    IA   
Sbjct: 69  HELPS-GGRDPLSY-DDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST 126

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
                                       +  V LG+     G   L +      V ++  
Sbjct: 127 ST------------------------FSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIF 162

Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRI 307
           T   + A +A  +GI++ +VE              E LE+  +  A  ++    L I  I
Sbjct: 163 TASPITAQRALAVGILNHVVEV-------------EELEDFTLQMAHHISEKAPLAIAVI 209

Query: 308 KPMI---PDKVLDVALKFEFVRNQIFG 331
           K  +    +     + +FE     +  
Sbjct: 210 KEELRVLGEAHTMNSDEFE-RIQGMRR 235

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  168 bits (428), Expect = 2e-50
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 39/234 (16%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
            +    +L V + + G        +   E       I  D   R  VI++G    ++A  
Sbjct: 28  HRDENGILEVRMHTNGSS-LVFTGKTHREFPDAFYDISRDRDNR-VVILTGSGDAWMAEI 85

Query: 127 DISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
           D   L       +  +    G+++L  +     P+++A++G+ L    E  L     +A 
Sbjct: 86  DFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILAS 144

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
           ++                            +P +  G++PG G     P    L      
Sbjct: 145 ENTVFQ-----------------------DMPHLNAGIVPGDGVHILWPLALGLYRGRYF 181

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
             T + L A +A ++ +V +++                 L E A   A  LA  
Sbjct: 182 LFTQEKLTAQQAYELNVVHEVLPQ-------------SKLMERAWEIARTLAKQ 222

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  169 bits (430), Expect = 3e-50
 Identities = 51/313 (16%), Positives = 108/313 (34%), Gaps = 53/313 (16%)

Query: 48  MGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGV---KVNSLNSEVMSEIQS----IL 100
           M   +        ST    E+   DV  + + +           ++ ++ +I      + 
Sbjct: 17  MSAVQPFIRTNIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLG 76

Query: 101 RRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQI------LSEI 154
           +R+ +   +   V+++     F  G D+++           ++    Q+           
Sbjct: 77  QRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVG 136

Query: 155 ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG 214
             +    +A + G+ LGGG E AL+CH  IA +                           
Sbjct: 137 LGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVM------------------------ 172

Query: 215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPG 274
           +GLPEV+  L PG G    + +  +      + L G    A++   MG+VD++V      
Sbjct: 173 MGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVV------ 226

Query: 275 LNHPEERTMEYLEEVA-VNTASQLASGKLK--INRIKPMIPDKVLDVALKFEFVRNQIFG 331
              P  + +  +E+V   +  +  A   ++        +     L+  ++   +      
Sbjct: 227 ---PRGQGVAAVEQVIRESKRTPHAWAAMQQVREMTTAV----PLEEMMRITEIWVDTAM 279

Query: 332 KAKEKVMKMSGGL 344
           +  EK ++    L
Sbjct: 280 QLGEKSLRTMDRL 292

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  165 bits (421), Expect = 2e-49
 Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 45/258 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
            +V V+TLD P  K N  +  + + ++  L R  +D S+R AV++ G     F AG D +
Sbjct: 8   DEVRVITLDHPN-KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFN 65

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
            +     ++ +++       +   + +  KP +AA+ G  +G G + AL    R+     
Sbjct: 66  EVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTA 125

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                                      +PE+  G+    G    L        + ++   
Sbjct: 126 N------------------------FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQ 160

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIK 308
            ++L A +     +V+Q+VE                L + A+  A  +AS         K
Sbjct: 161 CQSLDAPRCVDYRLVNQVVES-------------SALLDAAITQAHVMASYPASAFINTK 207

Query: 309 PMI---PDKVLDVALKFE 323
             +      +L+      
Sbjct: 208 RAVNKPFIHLLEQTRDAS 225

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  165 bits (420), Expect = 3e-49
 Identities = 50/261 (19%), Positives = 87/261 (33%), Gaps = 48/261 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VL+VT+ + G K     S    E+      I  D   +  VI++G    F    D + 
Sbjct: 24  GGVLLVTVHTEG-KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTS 81

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
                T     +I   GQ++L+ + S   P++AA++G  +    E+ +     +A +   
Sbjct: 82  FNL-GTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAESAT 139

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                      P    G++PG G     P +          LTG
Sbjct: 140 FQ-----------------------DGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTG 176

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG--------KL 302
           + L A  A   G V++++               + L   A   A  +A          + 
Sbjct: 177 QELDARTALDYGAVNEVLSE-------------QELLPRAWELARGIAEKPLLARRYARK 223

Query: 303 KINRIKPMIPDKVLDVALKFE 323
            + R    + +  L + L  E
Sbjct: 224 VLTRQLRRVMEADLSLGLAHE 244

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  163 bits (416), Expect = 2e-48
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 43/257 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V+++T++ P  + N+L++ ++S+  +    I  D  IR A I++G    +  G D+S 
Sbjct: 17  GPVVILTMNRPHRR-NALSTNMVSQFAAAWDEIDHDDGIR-AAILTGAGSAYCVGGDLSD 74

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
               +          +  + L    +  KP++AA++G+CLGGG E+      R++ +   
Sbjct: 75  GWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHAT 134

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    GLPEV  GL+PGAG   RL +       ++M LTG
Sbjct: 135 ------------------------FGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTG 170

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
           + L A +A   G+V  +V                   + A + A ++   G L +   K 
Sbjct: 171 EPLTAFEAYHFGLVGHVVPA-------------GTALDKARSLADRIVRNGPLAVRNAKE 217

Query: 310 MI---PDKVLDVALKFE 323
            I        + A   E
Sbjct: 218 AIVRSGWLAEEDARAIE 234

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  163 bits (415), Expect = 3e-48
 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 49/244 (20%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
             A   VL V L+ P  K N++N     E+    ++I  DS  R AV++SG    F +G 
Sbjct: 8   TSAQKHVLHVQLNRPE-KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGI 65

Query: 127 DISMLA----------ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEV 176
           D+  +A            + A  ++ +    Q+  + IE  PKP++AAI G C+GGG+++
Sbjct: 66  DLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDL 125

Query: 177 ALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK 236
             AC  R   +D                            + EV +GL    G  QRLPK
Sbjct: 126 ISACDIRYCTQDAF------------------------FQVKEVDVGLAADVGTLQRLPK 161

Query: 237 LTALPN-VLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS 295
           +    + V ++T T + + AD+A   G+V ++                + +   A   A+
Sbjct: 162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFP------------DKDVMLNAAFALAA 209

Query: 296 QLAS 299
            ++S
Sbjct: 210 DISS 213

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  163 bits (414), Expect = 3e-48
 Identities = 48/231 (20%), Positives = 79/231 (34%), Gaps = 42/231 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS- 129
           G VL + ++ P  K N+L  E+   I   L     +  +R  V++ G    F AG D+  
Sbjct: 13  GGVLTLAINRPEAK-NALYGELYLWIAKALDEADQNKDVR-VVVLRGAEHDFTAGNDMKD 70

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
            +   +  +           +L       KP++ A+ G  +G G+ + L      A    
Sbjct: 71  FMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTA 130

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                                      +P V LGL P  G +Q L K        ++  T
Sbjct: 131 L------------------------FQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFT 166

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            K   A+ A + G+V+++VE                    A  TA  L + 
Sbjct: 167 AKKFNAETALQAGLVNEIVED---------------AYATAQATAQHLTAL 202

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  162 bits (412), Expect = 5e-48
 Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 42/234 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
            D L +TLD P  K N L++E+ + +   +R   +++SI  ++I+  K    F +G  + 
Sbjct: 12  NDALYITLDYPEKK-NGLDAELGTSLLEAIRAGNNETSIH-SIILQSKHRAYFSSGPRLE 69

Query: 130 MLAAC---KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
            L  C   ++  +++++       + EI +SPK  VA I+G   GGG  + LAC  RIA+
Sbjct: 70  DLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIAL 129

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
           +  K                               +G+ P  G +  LP++      +++
Sbjct: 130 RRAK------------------------FLENFHKMGISPDLGASYFLPRIIGYEQTMNL 165

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            L GK   +++A ++G++ ++ E              + L+E   N    ++ G
Sbjct: 166 LLEGKLFTSEEALRLGLIQEICENK------------QELQERVKNYLKAVSEG 207

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  162 bits (412), Expect = 5e-48
 Identities = 54/257 (21%), Positives = 93/257 (36%), Gaps = 43/257 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VLV+ L+ P  + N+ +  ++ E+   L   ++D+ +R A ++ G+   F AG D++ 
Sbjct: 17  GYVLVIGLNRPAKR-NAFDKTMLEELALALGEYETDTDLR-AAVLYGEGPLFTAGLDLAS 74

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +AA                   +     KP++ A+ G  L  G+E+ALA    IA +   
Sbjct: 75  VAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETAT 134

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                       EV  G+ P  G T R P+     N +   LT 
Sbjct: 135 ------------------------FAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTA 170

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
            T  A +A ++GIV ++V                   + A+  A  +A    L +     
Sbjct: 171 DTFDAVEAHRIGIVQEIVPV-------------GEHVDTAIAIAQTIARQAPLGVQATLR 217

Query: 310 MI---PDKVLDVALKFE 323
                  +    A +  
Sbjct: 218 NARLAVREGDAAAEEQL 234

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  161 bits (411), Expect = 6e-48
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 41/230 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G + ++ LD  G + N+ +S +++++   +   +     R   ++      F AG D+  
Sbjct: 20  GHLFLIGLDRAGKR-NAFDSAMLADLALAMGEYERSEESR-CAVLFAHGEHFTAGLDLME 77

Query: 131 LAACKTADQVKQISKSGQQILSEIESS-PKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
           LA  K A    +    G      ++    KP+V A+ G+C   G+E+ L     +A +  
Sbjct: 78  LAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGT 136

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
           +                            EV+ G+ P  G T R P+     + +   LT
Sbjct: 137 R------------------------FAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILT 172

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           G    AD+A +M ++ ++VEP                   A+  A ++A 
Sbjct: 173 GDEFDADEALRMRLLTEVVEP-------------GEELARALEYAERIAR 209

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  162 bits (412), Expect = 6e-48
 Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 48/253 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             VL + L  P  + N+LNS+++ E+   +R+   D S R A++++G+   F AGAD+S 
Sbjct: 29  EAVLTIELQRPERR-NALNSQLVEELTQAIRKAG-DGSAR-AIVLTGQGTAFCAGADLSG 85

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
            A                ++   +++SP P+V AI+G  +G GL++A+ C  R+   D  
Sbjct: 86  DA------FAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAF 139

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                      P    GL       +RL  L        M L+ 
Sbjct: 140 ------------------------FQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSA 175

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPM 310
           + L A+ A   G+ +++                 +  E+A      +   K  +N     
Sbjct: 176 EKLTAEIALHTGMANRIG---------TLADAQAWAAEIARLAPLAIQHAKRVLND---- 222

Query: 311 IPDKVLDVALKFE 323
             D  ++ A    
Sbjct: 223 --DGAIEEAWPAH 233

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  161 bits (410), Expect = 1e-47
 Identities = 58/267 (21%), Positives = 100/267 (37%), Gaps = 53/267 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +TL+ P  + N+L++E+ S     L   Q+D  +   VI++G    F AG D+  
Sbjct: 17  DRVRTLTLNRPQSR-NALSAELRSTFFRALSDAQNDDDVD-VVIVTGADPVFCAGLDLKE 74

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           L            +     I  +     KP++ AI+G+ + GGLE+AL C   IA ++ K
Sbjct: 75  LGD----------TTELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAK 124

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                          +GL+P  G + RLP+   +     M+LTG
Sbjct: 125 ------------------------FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTG 160

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRIKP 309
             L A  A + G+V ++V               + L   A   A+ +    +  +  +  
Sbjct: 161 DYLSAQDALRAGLVTEVVAH-------------DDLLTAARRVAASIVGNNQKAVRALLD 207

Query: 310 MI---PDKVLDVALKFEFVRNQIFGKA 333
                       AL  E    + + ++
Sbjct: 208 SYHRIDALQTGGALWAEAEAARQWMRS 234

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  161 bits (411), Expect = 1e-47
 Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 41/235 (17%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           E     VL + LDSP   +NS+  ++  ++  +   I  D  +R  V++ G+   F +G 
Sbjct: 18  EPGEHGVLNLVLDSP--GLNSVGPQMHRDLADVWPVIDRDPDVR-VVLVRGEGKAFSSGG 74

Query: 127 DIS-MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
               +       +   +I +  + ++  + +  KP+V+AI G  +G GL VAL     +A
Sbjct: 75  SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
               K                        +      LG+  G       P L  +     
Sbjct: 135 SATAK------------------------IIDGHTKLGVAAGDHAAICWPLLVGMAKAKY 170

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
             LT +TL  ++A+++G+V   V+              + +   A   A  LA G
Sbjct: 171 YLLTCETLSGEEAERIGLVSTCVDD-------------DEVLPTATRLAENLAQG 212

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  161 bits (409), Expect = 1e-47
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 39/230 (16%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +TL+ P    N+ N  +       L     D  +   V+++G    F AG D++ 
Sbjct: 14  NRVRTLTLNRPEAL-NAFNEALYDATAQALLDAADDPQVA-VVLLTGSGRGFSAGTDLAE 71

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           + A  T     +     + ++  +   PKP++ A++G  +G G  +             +
Sbjct: 72  MQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTAR 131

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                   L  P   LG+ P A  +  LP+L    N   + ++ 
Sbjct: 132 ------------------------LKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSS 167

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           + + A++A +MG+V ++  P             E L   A   A  LA+ 
Sbjct: 168 EWIDAEEALRMGLVWRICSP-------------EELLPEARRHAEILAAK 204

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  160 bits (408), Expect = 3e-47
 Identities = 46/237 (19%), Positives = 92/237 (38%), Gaps = 34/237 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS- 129
           G + ++TL+ P    NS+N ++   +  + +R+  D + R A +I+G    F AG D   
Sbjct: 36  GALRIITLNRPDSL-NSVNDDLHVGLARLWQRLTDDPTAR-AAVITGAGRAFSAGGDFGY 93

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
           +      AD   +  + G++I+  +     P+VAA++G  +G G  +          ++ 
Sbjct: 94  LKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENA 153

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                                    L  P V +GL+   GG    P   +L    +  LT
Sbjct: 154 Y------------------------LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALT 189

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
           G  + A +A ++G+ + + +             +   +++       + S K  +N 
Sbjct: 190 GTRISAQRAVELGLANHVADDP-------VAEAIACAKKILELPQQAVESTKRVLNI 239

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  159 bits (405), Expect = 3e-47
 Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 45/230 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V+ +T+     + N  +  ++  ++     +  +   +  VI++G    F +GA    
Sbjct: 11  NGVVQITMKDESSR-NGFSPSIVEGLRHCFSVVAQNQQYK-VVILTGYGNYFSSGASKEF 68

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           L      +           +   I     PI+AA+ G   GGGL + L   + +  ++  
Sbjct: 69  LIRKTRGE------VEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESV 122

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                        +  G  P    +  L +        +M  TG
Sbjct: 123 ------------------------YATNFMKYGFTPVGATSLILREKLGSELAQEMIYTG 158

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           +  +  +  + GI   +V               + +   A     ++A  
Sbjct: 159 ENYRGKELAERGIPFPVVSR-------------QDVLNYAQQLGQKIAKS 195

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  160 bits (407), Expect = 4e-47
 Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 41/231 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G  L+VT++ P  + N+L+ E+M  +     R+ +D  IR   I++G  G F AG D+  
Sbjct: 28  GHTLIVTMNRPSRR-NALSGEMMQIMVEAWDRVDNDPDIR-CCILTGAGGYFCAGMDLKA 85

Query: 131 LAACKTADQVKQ--ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
                  D  K      S    L +     KP++AA+ G  + GG E+      R+A + 
Sbjct: 86  ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAES 145

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
            K                         G+ E    L P  G   RL +        D+ L
Sbjct: 146 AK------------------------FGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLL 181

Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           TG+ + A +AK+MG+V  +V                     A+  A  +A+
Sbjct: 182 TGRHITAAEAKEMGLVGHVVPD-------------GQALTKALEIAEIIAA 219

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  159 bits (405), Expect = 5e-47
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 33/224 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V V+TL  P  + NS   E+  ++ +  +R+  D ++R  ++++G P  F +GA IS 
Sbjct: 15  DGVAVLTLHGPSTR-NSFTVELGRQLGAAYQRLDDDPAVR-VIVLTGAPPAFCSGAQISA 72

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
            A   T    +    S   +         P++AA++G  +G G+ +AL    RI  ++ +
Sbjct: 73  AAE--TFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGR 130

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                     +P+V  G+ P A     LP+L       ++ LTG
Sbjct: 131 ------------------------YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTG 166

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
            +  A +A + G+ ++ +              +    ++A N A
Sbjct: 167 ASFSAQRAVETGLANRCLPA-----GKVLGAALRMAHDIATNVA 205

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  159 bits (404), Expect = 1e-46
 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 47/269 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             +  V L+ P  + N+++  +  E+  +L  ++ D +    ++++G    + AG D+  
Sbjct: 17  DGIAFVILNRPEKR-NAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAGEAWTAGMDLKE 74

Query: 131 LA----ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
                 A     Q K   ++ Q     +    KP +A ++G C GGG    +AC   I  
Sbjct: 75  YFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICA 134

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
            +                           GL E+  G+ PG   ++ +         L  
Sbjct: 135 DEAT------------------------FGLSEINWGIPPGNLVSKAMADTVGHRQSLMY 170

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKIN 305
            +TGKT    KA +MG+V++ V                 L EV +  A  L     + + 
Sbjct: 171 IMTGKTFGGQKAAEMGLVNESVPL-------------AQLREVTIELARNLLEKNPVVLR 217

Query: 306 RIKPMI---PDKVLDVALKFEFVRNQIFG 331
             K       +   +    + + +     
Sbjct: 218 AAKHGFKRCRELTWEQNEDYLYAKLDQSR 246

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  158 bits (401), Expect = 2e-46
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 46/259 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V VV L+ P  + N L+ E+   +   L  +++D  +R AV+++G+   F AGAD++ 
Sbjct: 7   GHVAVVFLNDPERR-NPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAF 64

Query: 131 LA--ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
           L       A++  + S S  ++   + + PKP VAA++G  + GG  +ALAC   +  ++
Sbjct: 65  LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
            +                        LG  EV +G +     +  L +        D+ L
Sbjct: 125 AR------------------------LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLL 159

Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GKLKINRI 307
           TG+ ++A +AK +G+V+++  P                 E A   A ++A      +   
Sbjct: 160 TGRLVEAREAKALGLVNRIAPP-------------GKALEEAKALAEEVAKNAPTSLRLT 206

Query: 308 KPMI---PDKVLDVALKFE 323
           K ++   P   L+   +  
Sbjct: 207 KELLLALPGMGLEDGFRLA 225

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  156 bits (398), Expect = 5e-46
 Identities = 38/254 (14%), Positives = 78/254 (30%), Gaps = 40/254 (15%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
                 TL  P  K N+L++E++  +   +     +  +   ++ +G    F AG D + 
Sbjct: 15  PAAWTFTLSRPE-KRNALSAELVEALIDGVDAAHREQ-VP-LLVFAGAGRNFSAGFDFTD 71

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
               ++   +       + +L  +  SP   +A   G   G G+++  AC +R    +  
Sbjct: 72  YET-QSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                     +P +  GL+    GT+R   +      L +  + 
Sbjct: 131 ------------------------FRMPGLKFGLVL---GTRRFRDIVGADQALSILGSA 163

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPM 310
           +   AD+A+++G V                      E       +  A+    +      
Sbjct: 164 RAFDADEARRIGFVRDCAAQ-----AQWPALIDAAAEAATALDPATRATLHRVLRDDHDD 218

Query: 311 IPDKVLDVALKFEF 324
                   AL    
Sbjct: 219 A----DLAALARSA 228

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  155 bits (393), Expect = 3e-45
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 45/229 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             +L++T++ P  K NS+N+ V   +   + R+ +D+ +    I++G  G F AG D+  
Sbjct: 23  DRILIITINRPKAK-NSVNAAVSRALADAMDRLDADAGLS-VGILTGAGGSFCAGMDLKA 80

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
            A  +           G+ +        KP++AA+ G  L GG E+ALA    +A +D  
Sbjct: 81  FARGENVVV------EGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSA 134

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    G+PEV  GL+ G GG  RLP+       +++ LTG
Sbjct: 135 ------------------------FGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTG 170

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
             L A++A  +G+V+ L EP                 + A+  A ++ +
Sbjct: 171 DNLSAERAHALGMVNVLAEP-------------GAALDAAIALAEKITA 206

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  154 bits (391), Expect = 7e-45
 Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 42/230 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
           G+V+V+T++ P  + N++N+ V   +   L   Q D  +R AV+++G     F AGAD+ 
Sbjct: 17  GNVMVITINRPEAR-NAINAAVSIGVGDALEEAQHDPEVR-AVVLTGAGDKSFCAGADLK 74

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
            +A  +         + G           KP +AA++G+ LGGG E+ALA    +A +  
Sbjct: 75  AIAR-RENLYHPDHPEWGFAGYVR-HFIDKPTIAAVNGTALGGGTELALASDLVVADERA 132

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
           +                         GLPEV  GL+  AGG  R+ +       + + LT
Sbjct: 133 Q------------------------FGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLT 168

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           G+ L A  A+  G+++++VE                + + A+  AS +  
Sbjct: 169 GEPLSAAAARDWGLINEVVEA-------------GSVLDAALALASAITV 205

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  153 bits (390), Expect = 9e-45
 Identities = 50/237 (21%), Positives = 82/237 (34%), Gaps = 43/237 (18%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
            K  G   ++         NSLN EVM E+QS L    +D S    V++S     F  G 
Sbjct: 10  RKQDGFTHILLSTKSSEN-NSLNPEVMREVQSALSTAAADDSK--LVLLSAVGSVFCCGL 66

Query: 127 DISMLAACKTAD---QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           D        T D   +  +++++ +  ++      KPI+ A++G  +G G  +   C   
Sbjct: 67  DFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 126

Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
            A +                              P    G  P    T   PK+    + 
Sbjct: 127 WANEKAW------------------------FQTPYTTFGQSPDGCSTVMFPKIMGGASA 162

Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            +M L+G+ L A +A   G+V Q+  P                 +  +    +LAS 
Sbjct: 163 NEMLLSGRKLTAQEACGKGLVSQVFWP-------------GTFTQEVMVRIKELASC 206

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  153 bits (389), Expect = 1e-44
 Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 41/230 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  +TL+ P    N+   ++ +E+   L++  +D ++R  V+I+G    F AG D+S 
Sbjct: 11  GQVAWLTLNRPDQL-NAFTEQMNAEVTKALKQAGADPNVR-CVVITGAGRAFCAGEDLSG 68

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +      D    +      ++  +    KP+VAA++G+  G G+ +ALAC +R+  +   
Sbjct: 69  VTE--EMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                        + +GL+P AG    LP+L      L++ + G
Sbjct: 127 ------------------------FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLG 162

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           + + A++A  +G+  +++                  EE     A +L++ 
Sbjct: 163 EKVTAEEAAALGLATKVIPL-------------SDWEEEVKQFAERLSAM 199

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  152 bits (387), Expect = 2e-44
 Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 41/235 (17%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
                 VL +T        N++   +   +  + R +++   +R AV++ G+ G F AG 
Sbjct: 15  AWPRPGVLEITFR-GEKL-NAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGG 71

Query: 127 DISMLAACKTADQVK-QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
              ++   + + +   ++    + ++    + P+P+VAA+    +G GL +ALA    + 
Sbjct: 72  SFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVV 131

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
            K  +                        L    + LG+  G       P L  +     
Sbjct: 132 GKGTR------------------------LLDGHLRLGVAAGDHAVLLWPLLVGMAKAKY 167

Query: 246 MTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
             L  + L  ++A+++G+V   VE              E + E A+  A +LA G
Sbjct: 168 HLLLNEPLTGEEAERLGLVALAVED-------------EKVYEKALEVAERLAQG 209

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  151 bits (383), Expect = 1e-43
 Identities = 48/265 (18%), Positives = 98/265 (36%), Gaps = 52/265 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G    +TL+ P    N+L+  +++E+++     ++D  +   ++++G    F +GAD+  
Sbjct: 19  GHTATITLNRPDAL-NALSPHMITELRAAYHEAENDDRVW-LLVVTGTGRAFCSGADVKE 76

Query: 131 LAACKTADQVK------QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
           +         +         ++ Q+      +  KP++ A++G C G G++        I
Sbjct: 77  IPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVI 136

Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
           A +                              P V +GL+ G     R+ ++      L
Sbjct: 137 ASEQAT------------------------FFDPHVSIGLVAG-RELVRVSRVLPRSIAL 171

Query: 245 DMTLTGK--TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS-GK 301
            M L GK   + A +A ++G++ ++VE              + L E A   A  + S   
Sbjct: 172 RMALMGKHERMSAQRAYELGLISEIVEH-------------DRLLERAHEIADIVNSNAP 218

Query: 302 LKINRIKPMI---PDKVLDVALKFE 323
           L +   +  I    +  L  A    
Sbjct: 219 LAVRGTRLAILKGLNVPLHEAEILA 243

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  151 bits (384), Expect = 1e-43
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)

Query: 40  MTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSI 99
           M       MG   AQT+   + +    ++   ++ +VTL+ P    N++  +VM   + +
Sbjct: 1   MAHHHHHHMGTLEAQTQGPGSMSFVLVDRPRPEIALVTLNRPERM-NAMAFDVMLPFKQM 59

Query: 100 LRRIQSDSSIRSAVIISGKPGCFIAGADI------SMLAACKTADQVKQISKSGQQILSE 153
           L  I  D+ +R AV+I+G    F +GAD         +          +  +   +++  
Sbjct: 60  LVDISHDNDVR-AVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILT 118

Query: 154 IESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKT 213
           +    +P++AAI+G+ +GGGL +ALAC  R+A +D                         
Sbjct: 119 LRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAY----------------------- 155

Query: 214 GLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLG 272
                 +  GL     G +  LP+        D+ LTG+ + AD+A+++G+V + V    
Sbjct: 156 -FRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS-- 212

Query: 273 PGLNHPEERTMEYLEEVAVNTASQLASG 300
                      E L E       ++A  
Sbjct: 213 -----------ESLLEECYAIGERIAGF 229

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  150 bits (382), Expect = 2e-43
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 43/234 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +T+  P    N+L+ + M E+   L R + D S+  AV+I+G    F AG  +  
Sbjct: 11  DGVAEITIKLPRH-RNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLRE 68

Query: 131 LAACKTA----DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
           +   K      D  +  +    Q++ +I    +P++AAI+G   GGGL ++LA    I  
Sbjct: 69  IPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICA 128

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
              K                               +G+      +  L ++  +   +++
Sbjct: 129 DSAK------------------------FVCAWHTIGIGNDTATSYSLARIVGMRRAMEL 164

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            LT +TL  ++AK  G+V ++                +   EVA   A +LA+ 
Sbjct: 165 MLTNRTLYPEEAKDWGLVSRVYPK-------------DEFREVAWKVARELAAA 205

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  150 bits (381), Expect = 2e-43
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 46/229 (20%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             VL++T++ P  + N++N  V   + +   ++ S + +    II+G  G F AG D+  
Sbjct: 15  DRVLLITINRPDAR-NAVNRAVSQGLAAAADQLDSSADLS-VAIITGAGGNFCAGMDLKA 72

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
             + +     + +  +            KPI+AA+ G  L GG E+ L+C   +A +  K
Sbjct: 73  FVSGEAVLSERGLGFTNVPP-------RKPIIAAVEGFALAGGTELVLSCDLVVAGRSAK 125

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                    G+PEV  GL+ GAGG  RLP        +++ LTG
Sbjct: 126 ------------------------FGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTG 161

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           ++  A+ A K G +++LV+                  + A+  A+++ +
Sbjct: 162 ESFTAEDAAKYGFINRLVDD-------------GQALDTALELAAKITA 197

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  148 bits (377), Expect = 6e-43
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 42/229 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V  V L+ P  + N+++    + + +      +D       ++ G  G F AGAD+  
Sbjct: 19  GPVTTVILNRPHAR-NAVDGPTAAALLAAFTEFDADPEAS-VAVLWGDNGTFCAGADLKA 76

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
           +   +  +           +        KP++AAISG  + GG+E+AL C  R+  +D  
Sbjct: 77  MGTDRGNELHPH---GPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAV 133

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                   LG+     G+    GGT RLP+L      +D+ LTG
Sbjct: 134 ------------------------LGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTG 169

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           + + A++A  +G+V+++V                   E A   A+++A+
Sbjct: 170 RPVHANEALDIGLVNRVVAR-------------GQAREAAETLAAEIAA 205

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  147 bits (374), Expect = 2e-42
 Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 38/244 (15%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V ++T++      N+ ++++++E++  L    +D+++R  +++      F AGAD++ 
Sbjct: 12  DKVGLLTMNRISKH-NAFDNQLLTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTW 69

Query: 131 L--AACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
           +   A  T ++  + S     ++  I  SPKP +A + G+  GGG  +A AC   IA   
Sbjct: 70  MQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTS 129

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
            +                            EV LGL+P A  +  + +         + +
Sbjct: 130 AR------------------------FCFSEVKLGLIP-AVISPYVVRAIGERAAKMLFM 164

Query: 249 TGKTLKADKAKKMGIVDQLVEP--LGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
           + +   A +A  + +V   V    L        E T++Y  +++ N    + + K     
Sbjct: 165 SAEVFDATRAYSLNLVQHCVPDDTL-------LEFTLKYASQISNNAPEAVKNSKQLAQY 217

Query: 307 IKPM 310
           +   
Sbjct: 218 VANK 221

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  146 bits (370), Expect = 1e-41
 Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 43/237 (18%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           +K  G   +V       K N+LN+EV+ EI + L    +D S    V+ S     F  G 
Sbjct: 28  KKEDGFTQIVLSTRSTEK-NALNTEVIKEIVNALNSAAADDSK--LVLFSAAGSVFCCGL 84

Query: 127 DISMLAACKTADQ---VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
           D          ++     ++  + +  ++      KPIV +++G  +G G  +   C   
Sbjct: 85  DFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLV 144

Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
            A +                              P    G  P    +   PK+    + 
Sbjct: 145 WANEKAW------------------------FQTPYTTFGQSPDGCSSITFPKMMGKASA 180

Query: 244 LDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            +M + G+ L A +A   G+V Q+                    +  +    +LAS 
Sbjct: 181 NEMLIAGRKLTAREACAKGLVSQVFLT-------------GTFTQEVMIQIKELASY 224

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  146 bits (370), Expect = 2e-41
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 38/235 (16%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           E   G V ++T +    ++N+   ++ +   + + R ++D  IR  ++++G+   F AGA
Sbjct: 34  EATPGGVAIITFNRAD-RLNAWGPDLAAGFYAAIDRAEADPGIR-VIVLTGRGRGFCAGA 91

Query: 127 DISMLAACKTADQVKQ-------ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALA 179
            +    A    D+              G++    +    KP++AAI+G C+G GL  AL 
Sbjct: 92  YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALM 151

Query: 180 CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTA 239
           C  R A    K                                GL+   G +  LP+LT+
Sbjct: 152 CDVRFAAAGAK------------------------FAAVFARRGLIAEFGISWILPRLTS 187

Query: 240 LPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA 294
               LD+ L+G+T  A++A ++G+V ++V P          R +EY E++A   +
Sbjct: 188 WAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-----EQLMPRALEYAEDIARYCS 237

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  145 bits (367), Expect = 2e-41
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 46/230 (20%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G VL + LD P    N++++ ++ E+   +R  ++D S+R AV+++G    F +G D++ 
Sbjct: 14  GAVLRIRLDRPEKL-NAVDTPMLEELSVHIRDAEADESVR-AVLLTGAGRAFCSGGDLTG 71

Query: 131 LAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKK 190
                 AD          +++  I S PKP++A + G+ +G G  +ALAC   +A     
Sbjct: 72  GDTAGAADA-------ANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASY 124

Query: 191 TGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTG 250
                                     L    +GL+P  G +  LP L        M +T 
Sbjct: 125 ------------------------FQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTA 160

Query: 251 KTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           + + A  A + G++  +                +  E V  +    ++ G
Sbjct: 161 EKISAATAFEWGMISHITSA-------------DEYESVLTDVLRSVSGG 197

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  142 bits (360), Expect = 2e-40
 Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 38/253 (15%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADI-- 128
           G V  +TL+SP  + N+L++ ++S++   LR   SD ++R  V+++   G F AGAD+  
Sbjct: 19  GPVARLTLNSPHNR-NALSTALVSQLHQGLRDASSDPAVR-VVVLAHTGGTFCAGADLSE 76

Query: 129 --SMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
             S  +     D   + ++    ++  I  S  P++AAI G    GG  +  AC   +A 
Sbjct: 77  AGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAG 136

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
                                         L E  +G+ P       LPKL+A       
Sbjct: 137 PRSS------------------------FALTEARIGVAPAIISLTLLPKLSA-RAAARY 171

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR 306
            LTG+   A +A+++G++    E L       +    + + +V   +   LA+ K     
Sbjct: 172 YLTGEKFDARRAEEIGLITMAAEDL-------DAAIDQLVTDVGRGSPQGLAASKALTTA 224

Query: 307 IKPMIPDKVLDVA 319
                 D+  +  
Sbjct: 225 AVLERFDRDAERL 237

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  140 bits (356), Expect = 1e-39
 Identities = 49/269 (18%), Positives = 91/269 (33%), Gaps = 45/269 (16%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
           E     VL +TL       + L+  +++ +   LRR   D  +   ++I G    F AG 
Sbjct: 11  EVLSEGVLTLTLGRA--PAHPLSRAMIAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGH 67

Query: 127 DISMLAACKTAD-----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACH 181
           D+  +   +         V  + ++   ++ ++   PKP +A + G     GL++  AC 
Sbjct: 68  DLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACD 127

Query: 182 YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALP 241
              A    +                          LP V  G          + ++    
Sbjct: 128 LAYASPAAR------------------------FCLPGVQNGGFCTTPAV-AVSRVIGRR 162

Query: 242 NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
            V +M LTG T  AD A   G++++++               +    +A    + L  G 
Sbjct: 163 AVTEMALTGATYDADWALAAGLINRILPE-----AALATHVADLAGALAARNQAPLRRGL 217

Query: 302 LKINRIKPMIPDKVLDVALKFE---FVRN 327
             +NR   +     L+ A        V +
Sbjct: 218 ETLNRHLEL----PLEQAYALATPVMVEH 242

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  140 bits (356), Expect = 1e-39
 Identities = 50/278 (17%), Positives = 111/278 (39%), Gaps = 38/278 (13%)

Query: 48  MGLFRAQTECKKNSTKHF--KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQS 105
           MG   AQT+   + ++    +++    V+ +TL+ P    N+L+  +++ +      +  
Sbjct: 9   MGTLEAQTQGPGSMSEPLLLQDRDERGVVTLTLNRPQAF-NALSEAMLAALGEAFGTLAE 67

Query: 106 DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI 165
           D S+R AV+++     F AG D+  + A  + +  +++      ++  I+  P P++A +
Sbjct: 68  DESVR-AVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARV 126

Query: 166 SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL 225
            G     G ++   C   +A +D +                          +  + +GL 
Sbjct: 127 HGIATAAGCQLVAMCDLAVATRDAR------------------------FAVSGINVGLF 162

Query: 226 PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEY 285
               G   L +        +M +TG+ + AD AK +G+V+++V P        ++     
Sbjct: 163 CSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-----KALDDEIEAM 216

Query: 286 LEEVAVNTASQLASGKLKINRIKPMIPDKVLDVALKFE 323
           + ++     + +A GK    R         ++ A    
Sbjct: 217 VSKIVAKPRAAVAMGKALFYRQIETD----IESAYADA 250

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  141 bits (357), Expect = 1e-39
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 55/286 (19%)

Query: 53  AQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSA 112
                +++  +    + +  +  + L +P  K N+L+  ++  +QS +      + ++  
Sbjct: 23  MGAGRRESEPRPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLK-V 80

Query: 113 VIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGG 172
           +IIS +   F +G D+  L   +  D   ++ ++  +++  I + P P++A ++G     
Sbjct: 81  IIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAA 140

Query: 173 GLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ 232
           G ++  +C   +A                                P V +GL     G  
Sbjct: 141 GCQLVASCDIAVASDKSS------------------------FATPGVNVGLFCSTPGVA 176

Query: 233 RLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN 292
            L +       L+M  TG+ + A +A   G++ ++V                 L+E  + 
Sbjct: 177 -LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPE-------------AELQEETMR 222

Query: 293 TASQLAS--------GKLKINRIKPMIPDKVLDVALKFE---FVRN 327
            A ++AS        GK    +  P      L  A        V N
Sbjct: 223 IARKIASLSRPVVSLGKATFYKQLPQ----DLGTAYYLTSQAMVDN 264

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  140 bits (354), Expect = 3e-39
 Identities = 48/234 (20%), Positives = 97/234 (41%), Gaps = 43/234 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  VTL  P    N+L  E  ++++ +L  +    ++R A++++G+   F +G D+  
Sbjct: 25  DGVATVTLARPDKL-NALTFEAYADLRDLLAELSRRRAVR-ALVLAGEGRGFCSGGDVDE 82

Query: 131 LAACKTA---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
           +     +    ++   ++   Q++  +   P P++AA+ G   G G  +ALA  +R+A  
Sbjct: 83  IIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADP 142

Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG-AGGTQRLPKLTALPNVLDM 246
             +                               +GL  G  G    LP++  L +   +
Sbjct: 143 STR------------------------FAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRL 178

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
            + G T++A +A+++G++ +L E                 +E A   A +LA G
Sbjct: 179 LMLGDTVRAPEAERIGLISELTEE-------------GRADEAARTLARRLADG 219

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  143 bits (363), Expect = 3e-39
 Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 64/254 (25%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC--------- 121
             V  +T+      +N+ + + + ++++ +     D  +R   ++ G             
Sbjct: 175 DGVARLTMCRDDR-LNAEDGQQVDDMETAVDLALLDPGVR-VGLLRGGVMSHPRYRGKRV 232

Query: 122 FIAGADISMLAACKTAD---------------QVKQISKSGQQILSEIESSPKPIVAAIS 166
           F AG ++  L+    +                    ++   +          KP VAA+ 
Sbjct: 233 FSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVD 292

Query: 167 GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLP 226
           G  +GGG ++ L     +A  D                            LP    G++P
Sbjct: 293 GFAIGGGAQLLLVFDRVLASSDAY------------------------FSLPAAKEGIIP 328

Query: 227 GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYL 286
           G     RL +         + L G+ + A + +   +VD++VEP             + L
Sbjct: 329 G-AANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEP-------------DEL 374

Query: 287 EEVAVNTASQLASG 300
           +     + ++L   
Sbjct: 375 DAAIERSLTRLDGD 388

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  138 bits (351), Expect = 6e-39
 Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 40/230 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
             +  VT++ P V  N+   + ++E+     R + D ++   ++++G+    F +G D  
Sbjct: 21  EGIAKVTINRPEV-RNAFTPKTVAEMIDAFSRARDDQNVS-VIVLTGEGDLAFCSGGDQK 78

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
                    + +    +   +   I   PKP++A + G  +GGG  + + C   IA  + 
Sbjct: 79  KRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNA 138

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                                     G     +G      G+  L ++       ++   
Sbjct: 139 I------------------------FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 174

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
            +   A +A  MG+V+ +V               E +E+  V    ++  
Sbjct: 175 CRQYNAQEALDMGLVNTVVPL-------------EKVEDETVQWCKEIMK 211

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  139 bits (351), Expect = 7e-39
 Identities = 41/287 (14%), Positives = 81/287 (28%), Gaps = 49/287 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G   ++ L +P    N+L  E    +  +L     +  +    II      F +GAD   
Sbjct: 17  GPFFIIHLINPDNL-NALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKG 74

Query: 131 LAACKTADQ----------VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           +A  +  D           V         +        K ++  ++G  +G    +   C
Sbjct: 75  IAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALC 134

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
               ++ DK                         L  P   LGL+   G T  LP     
Sbjct: 135 DIVYSINDKVY-----------------------LLYPFANLGLITEGGTTVSLPLKFGT 171

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
               +  +  K  K D   + G + +           P      +  +V      ++   
Sbjct: 172 NTTYECLMFNKPFKYDIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGL 224

Query: 301 KLK-INRIKPMI---PDKVLDVALKFEFVRNQIFGK---AKEKVMKM 340
            L     +K ++        + A   E   +  +       ++  ++
Sbjct: 225 YLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRFRQL 271

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  137 bits (348), Expect = 1e-38
 Identities = 40/244 (16%), Positives = 82/244 (33%), Gaps = 36/244 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADIS- 129
             V  +T   P    N++N  ++ E   +L + ++ + +   V++ G P  F  GAD   
Sbjct: 15  ASVCYITFHRPEAN-NTINDTLIEECLQVLNQCETST-VT-VVVLEGLPEVFCFGADFQE 71

Query: 130 MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK 189
           +    K   +     +    +  ++++ P   ++ + G    GGL    A    IA +  
Sbjct: 72  IYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTA 131

Query: 190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLT 249
                                      L E++ GL P A     L +         MTL 
Sbjct: 132 S------------------------FSLSELLFGLYP-ACVLPFLIRRIGRQKAHYMTLM 166

Query: 250 GKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKP 309
            K +   +A + G++D             +    ++L  +       +A  K  ++ +  
Sbjct: 167 TKPISVQEASEWGLIDAFDAES-------DVLLRKHLLRLRRLNKKGIAHYKQFMSSLDH 219

Query: 310 MIPD 313
            +  
Sbjct: 220 QVSR 223

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  135 bits (343), Expect = 2e-37
 Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 41/235 (17%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAG 125
           EK+   +  +T++ P V  N+     + E+   L   + D +I   +I++G     F +G
Sbjct: 32  EKSTDGIAKITINRPQV-RNAFRPLTVKEMIQALADARYDDNIG-VIILTGAGDKAFCSG 89

Query: 126 ADIS-MLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
            D           D       +      +I + PKP+VA ++G  +GGG  + + C   I
Sbjct: 90  GDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTI 149

Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
           A  +                           G     +G   G  G   + ++       
Sbjct: 150 AADNAI------------------------FGQTGPKVGSFDGGWGASYMARIVGQKKAR 185

Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           ++    +   A +A  MG+V+ +V                 LE+  V    ++  
Sbjct: 186 EIWFLCRQYDAKQALDMGLVNTVVPL-------------ADLEKETVRWCREMLQ 227

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  136 bits (345), Expect = 2e-37
 Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 56/251 (22%)

Query: 67  EKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-------K 118
            + V D  + V  + P V+ N+     + E+  +L   +    +   V+++G        
Sbjct: 60  HRHVDDATVRVAFNRPEVR-NAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDG 117

Query: 119 PGCFIAGADISMLA----------ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGS 168
              F +G D  +               T D  +       ++   I   PK ++  ++G 
Sbjct: 118 GWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGW 177

Query: 169 CLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA 228
             GGG  + + C   +A ++                              +  +G   G 
Sbjct: 178 AAGGGHSLHVVCDLTLASREYAR-----------------------FKQTDADVGSFDGG 214

Query: 229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEE 288
            G+  L +        ++   G+T  A++  +MG V+ + E                LE 
Sbjct: 215 YGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-------------AELET 261

Query: 289 VAVNTASQLAS 299
           V +  A+++ +
Sbjct: 262 VGLQWAAEINA 272

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  135 bits (341), Expect = 2e-37
 Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 43/233 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             +  +  + P  K N++N+E+  EI   L+    D SI    +++G    + +G D++ 
Sbjct: 34  DGITKIMFNRPKKK-NAINTEMYHEIMRALKAASKDDSII--TVLTGNGDYYSSGNDLTN 90

Query: 131 LAACKTADQ---VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK 187
                        K  +   ++ +      PKP++A ++G  +G  + +        A  
Sbjct: 91  FTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD 150

Query: 188 DKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMT 247
                                         P   LG  P    +   PK+ +     +M 
Sbjct: 151 RAT------------------------FHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML 186

Query: 248 LTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
           + GK L A +A   G+V ++                   ++         A  
Sbjct: 187 IFGKKLTAGEACAQGLVTEVFPD-------------STFQKEVWTRLKAFAKL 226

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  132 bits (334), Expect = 2e-36
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 45/235 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC------FIA 124
           G +  + ++ P    N+   + + E+       + D+ I   V+++G          F +
Sbjct: 18  GGIAKIVINRPHK-RNAFRPQTVFELYDAFCNAREDNRIG-VVLLTGAGPHSDGKYAFCS 75

Query: 125 GADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRI 184
           G D S+       D       +   +   I S PK ++A ++G  +GGG  + L C   I
Sbjct: 76  GGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTI 135

Query: 185 AVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL 244
           A  +                           G     +G   G  G+  L ++       
Sbjct: 136 AADNAI------------------------FGQTGPKVGSFDGGFGSSYLARIVGQKKAR 171

Query: 245 DMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
           ++    +   A +A++MG+V+ +V               + LEE  +  A ++ S
Sbjct: 172 EIWYLCRQYSAQEAERMGMVNTVVPV-------------DRLEEEGIQWAKEILS 213

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  126 bits (319), Expect = 3e-34
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 45/233 (19%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             +  +TL+ P    N+ N E++ E+ +   R   D+ +   +++      F AG D+  
Sbjct: 28  DRIATITLNRPEAA-NAQNPELLDELDAAWTRAAEDNDVS-VIVLRANGKHFSAGHDLRG 85

Query: 131 LAACKTADQVKQI----SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV 186
                    ++ I    S+   +      + PKP +AA+ G C+ GGL +   C   IA 
Sbjct: 86  GGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAA 145

Query: 187 KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDM 246
           +D                             P V++ +  G                 ++
Sbjct: 146 EDAL------------------------FSDPVVLMDI--GGVEYHGHTWELGPRKAKEI 179

Query: 247 TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS 299
             TG+ + A++  + G+V+++V         P +R    L+      A ++A 
Sbjct: 180 LFTGRAMTAEEVAQTGMVNRVV---------PRDR----LDAETRALAGEIAK 219

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  119 bits (301), Expect = 3e-31
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 67/267 (25%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             V  +T + P  K N++ ++   E+ +++ R   D  +   +++SG+   F AG D+S 
Sbjct: 43  DRVARITFNRPE-KGNAIVADTPLELSALVERADLDPDVH-VILVSGRGEGFCAGFDLSA 100

Query: 131 LAACKTAD-----------------------------QVKQISKSGQQILSEIESSPKPI 161
            A   ++                                 Q+     +  + +    KP 
Sbjct: 101 YAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPT 160

Query: 162 VAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM 221
           V  I G C+ GG ++AL     IA  D K                        +G P + 
Sbjct: 161 VVKIHGYCVAGGTDIALHADQVIAAADAK------------------------IGYPPMR 196

Query: 222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP--LGPGLNHPE 279
           +  +P AG                +  TG  +   +A + G+  +  +P  L       +
Sbjct: 197 VWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADL-------D 246

Query: 280 ERTMEYLEEVAVNTASQLASGKLKINR 306
            RT   +E +A    +QL   KL  N 
Sbjct: 247 ARTERLVERIAAMPVNQLIMAKLACNT 273

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 38/208 (18%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADIS 129
             V VVTL+     +N+L+ +++  +   L   + D  I   V++ G     F AG D+ 
Sbjct: 50  KLVGVVTLNVEK-ALNALDLDMVRAMTVQLNLWKKDPLIA-CVVLDGSGEKAFCAGGDVR 107

Query: 130 MLAACKTADQVKQISKSGQQILSE------IESSPKPIVAAISGSCLGGGLEVALACHYR 183
            L     A + +    +      E      + +  KP++    G  +GGGL +     ++
Sbjct: 108 ALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHK 167

Query: 184 IAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNV 243
           +                          + + + +PEV +GL P  GG+  L +   +P  
Sbjct: 168 VVT------------------------ETSRIAMPEVTIGLYPDVGGSYFLNR---MPGK 200

Query: 244 LD--MTLTGKTLKADKAKKMGIVDQLVE 269
           +   + LT   + A  A  +G+ D  + 
Sbjct: 201 MGLFLGLTAYHMNAADACYVGLADHYLN 228

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 57/209 (27%), Positives = 84/209 (40%), Gaps = 44/209 (21%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADIS 129
           G   V+TL+ P   +N+L   ++ +I   L++ + D      +II G  G  F AG DI 
Sbjct: 14  GCTGVITLNRPK-FLNALTLNMIRQIYPQLKKWEQDPETF-LIIIKGAGGKAFCAGGDIR 71

Query: 130 MLAACKTADQVKQISKSGQQILSE-------IESSPKPIVAAISGSCLGGGLEVALACHY 182
           +++  + A Q     K       E       + S  KP VA I G  +GGG  V L+ H 
Sbjct: 72  VISEAEKAKQ-----KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGG--VGLSVH- 123

Query: 183 RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPN 242
                                +R+    +K    +PE  +GL P  GG   LP+   L  
Sbjct: 124 -------------------GQFRVA--TEKCLFAMPETAIGLFPDVGGGYFLPR---LQG 159

Query: 243 VLD--MTLTGKTLKADKAKKMGIVDQLVE 269
            L   + LTG  LK     + GI    V+
Sbjct: 160 KLGYFLALTGFRLKGRDVYRAGIATHFVD 188

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.4 bits (174), Expect = 1e-13
 Identities = 55/391 (14%), Positives = 110/391 (28%), Gaps = 107/391 (27%)

Query: 7   PAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS--TKH 64
              +     +   +        +     F +  +    K LM     +TE ++ S  T+ 
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFLMS--PIKTEQRQPSMMTRM 111

Query: 65  F---KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
           +   +++   D  V        K N    +   +++  L  ++   +    V+I G  G 
Sbjct: 112 YIEQRDRLYNDNQVFA------KYNVSRLQPYLKLRQALLELRPAKN----VLIDGVLGS 161

Query: 122 FIAGADISMLAACKTADQVKQISKSGQQI----LSEIESSPKPIVAAISGSCLGGGLEVA 177
              G   + +A        K   K   +I    L    +SP+ +            LE+ 
Sbjct: 162 ---GK--TWVAL-DVCLSYKVQCKMDFKIFWLNLKN-CNSPETV------------LEML 202

Query: 178 LACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL 237
               Y+I            +   + + ++ +   +  L                +RL K 
Sbjct: 203 QKLLYQI----DPNWTSRSD--HSSNIKLRIHSIQAEL----------------RRLLKS 240

Query: 238 TALPN---VLDMTLTGKTLKA------------DKAKKMGIVDQL---------VEPLGP 273
               N   VL      K   A             K     + D L         ++    
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK----QVTDFLSAATTTHISLDHHSM 296

Query: 274 GLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKP----MIPDKVLDVALKFEFVRNQI 329
            L   E      L +        L    L  N   P    +I + + D    ++  +  +
Sbjct: 297 TLTPDE--VKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWK-HV 350

Query: 330 FGKAKEKVMKMS-GGLYPAPLKS--KQGLIF 357
                  +++ S   L PA  +    +  +F
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 25/176 (14%), Positives = 55/176 (31%), Gaps = 14/176 (7%)

Query: 146 SGQQILSEIESSPKPIVAAIS---GSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALAC 202
           +   I+  I+ S  P++  +     S    G  +AL  H          G   P +  + 
Sbjct: 55  AMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQ 114

Query: 203 HYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMG 262
           +  I+             +  L   A  + R   +       +      +L  ++A K G
Sbjct: 115 NGSIIEAPPAITNYFIAYIKSL---AQESGRNATI-----AEEFITKDLSLTPEEALKYG 166

Query: 263 IVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDV 318
           +++ +   +   L        +        T   L    +++  + P   DK++  
Sbjct: 167 VIEVVARDINELLKKSNGMKTKIPVNGRYVT---LNFTNVEVRYLAPSFKDKLISY 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.83
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.8
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.77
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.51
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.5
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.39
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.34
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.07
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.64
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.52
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.51
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.5
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.4
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.29
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.19
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.94
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.77
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.73
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.67
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.38
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.32
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.28
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	97.26
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.24
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.1
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.03
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.03
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.83
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.82
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.65
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.51
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.2
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.14
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.05
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.04
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.99
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	94.83
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	94.15
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	92.92
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	92.66
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	90.12
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	80.68

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.7e-47  Score=359.32  Aligned_cols=198  Identities=27%  Similarity=0.455  Sum_probs=182.1

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS  144 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  144 (366)
                      |.+|++|+|++||||||+ +.|+||.+|+++|.++++.++.|++|++|| ++|.|++||+|+||+++......  .....
T Consensus         2 vl~E~~dgVa~itlnrP~-~~NAl~~~m~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~--~~~~~   77 (254)
T 3hrx_A            2 VLKERQDGVLVLTLNRPE-KLNAITGELLDALYAALKEGEEDREVRALL-LTGAGRAFSAGQDLTEFGDRKPD--YEAHL   77 (254)
T ss_dssp             EEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSBCCBCGGGTTTSCCC--HHHHT
T ss_pred             eEEEEECCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EeCCCCCcccCccHHHhcccchh--hHHHH
Confidence            578899999999999998 899999999999999999999999999755 58899999999999998764332  23445


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                      +.++.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++|+
T Consensus        78 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~lGl  133 (254)
T 3hrx_A           78 RRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGA------------------------SFTTAFVRIGL  133 (254)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTC------------------------EEECCGGGGTC
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCC------------------------EEEchhhCcCc
Confidence            667889999999999999999999999999999999999999987                        99999999999


Q ss_pred             CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060         225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  303 (366)
Q Consensus       225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~  303 (366)
                      +|++|++++|+|++|..+|++|++||++++|+||+++||||+|||+             +++.+.+.+++++|+..+..
T Consensus       134 ~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~~~  199 (254)
T 3hrx_A          134 VPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPA-------------EKLMEEALSLAKELAQGPTR  199 (254)
T ss_dssp             CCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHHHHHHTSCHH
T ss_pred             CCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEecCc-------------HHHHHHHHHHHHHhhccchH
Confidence            9999999999999999999999999999999999999999999997             67899999999999988654

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=8e-47  Score=358.63  Aligned_cols=210  Identities=26%  Similarity=0.444  Sum_probs=182.3

Q ss_pred             cCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC---
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---  136 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~---  136 (366)
                      .+++.|.++.+++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++.....   
T Consensus        12 sM~e~il~~~~~gVa~itlnRP~-~~NAl~~~m~~~L~~al~~~~~d~~vr~vV-ltg~G~~FcaG~Dl~~~~~~~~~~~   89 (274)
T 4fzw_C           12 SMMEFILSHVEKGVMTLTLNRPE-RLNSFNDEMHAQLAECLKQVERDDTIRCLL-LTGAGRGFCAGQDLNDRNVDPTGPA   89 (274)
T ss_dssp             ----CEEEEEETTEEEEEECCTT-TTSCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSCSBCCBCCC---------C
T ss_pred             cccccEEEEEECCEEEEEEcCcC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCceeCCcChHhhhccccccc
Confidence            34578999999999999999999 799999999999999999999999999755 5889999999999998754221   


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccc
Q psy9060         137 ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLG  216 (366)
Q Consensus       137 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (366)
                      .+....+.+.++.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|+
T Consensus        90 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~  145 (274)
T 4fzw_C           90 PDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSA------------------------KFV  145 (274)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTC------------------------EEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCC------------------------EEE
Confidence            23344455667789999999999999999999999999999999999999987                        999


Q ss_pred             ccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         217 LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       217 ~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      +||+++|++|++|++++|+|++|..+|++|++||++++|+||+++||||+|||+             +++.+.+.+++++
T Consensus       146 ~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~  212 (274)
T 4fzw_C          146 MAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDD-------------ETLADTAQQLARH  212 (274)
T ss_dssp             CCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-------------GGHHHHHHHHHHH
T ss_pred             CcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCceEEeCh-------------HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997             6789999999999


Q ss_pred             HhcCccc-ccccC
Q psy9060         297 LASGKLK-INRIK  308 (366)
Q Consensus       297 la~~~~~-~~~~~  308 (366)
                      |+..+.. +..+|
T Consensus       213 la~~~~~a~~~~K  225 (274)
T 4fzw_C          213 LATQPTFGLGLIK  225 (274)
T ss_dssp             HTTSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH
Confidence            9988643 44444

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.6e-46  Score=353.70  Aligned_cols=204  Identities=31%  Similarity=0.522  Sum_probs=183.2

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++|+|++||||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.|++||+|+||+++.....   ...
T Consensus         5 s~l~ve~~~~Va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~---~~~   79 (258)
T 4fzw_A            5 SELIVSRQQRVLLLTLNRPA-ARNALNNALLMQLVNELEAAATDTSISVCV-ITGNARFFAAGADLNEMAEKDL---AAT   79 (258)
T ss_dssp             CEEEEEEETTEEEEEEECGG-GTTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EECCSSEEEECBCHHHHHTCCH---HHH
T ss_pred             CcEEEEEECCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCeEEEE-EeCCCCceeCCCchhhhccchh---hhH
Confidence            45889999999999999999 789999999999999999999999999755 5899999999999999865322   222


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +......++.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++
T Consensus        80 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~  135 (258)
T 4fzw_A           80 LNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENA------------------------RFGLPEITL  135 (258)
T ss_dssp             HTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCGGGG
T ss_pred             HHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCC------------------------EEECcccCC
Confidence            33445678899999999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..+|++|++||+.++|+||+++||||+|||+             +++.+.+.+++++|+..++
T Consensus       136 Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~p  202 (258)
T 4fzw_A          136 GIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPS-------------DLTLEYALQLASKMARHSP  202 (258)
T ss_dssp             TCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-------------TTHHHHHHHHHHHHTTSCH
T ss_pred             CcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHCCCeeEEeCc-------------hHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999997             5788999999999998764


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +..+|
T Consensus       203 ~a~~~~K  209 (258)
T 4fzw_A          203 LALQAAK  209 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3 44444

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=5.4e-46  Score=350.94  Aligned_cols=210  Identities=25%  Similarity=0.422  Sum_probs=189.0

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcE-EcCCCcchhhh--c-CC
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF-IAGADISMLAA--C-KT  136 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F-~aG~Dl~~~~~--~-~~  136 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++|+|| ++|.|+.| |+|+|++++..  . ..
T Consensus         2 s~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            2 SLSYVHTEIQNDALYITLDYPE-KKNGLDAELGTSLLEAIRAGNNETSIHSII-LQSKHRAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             -CCSEEEEECSSEEEEEECCGG-GTTBCCHHHHHHHHHHHHHHHHCSSCCEEE-EEESCTTEEECBSCHHHHHHHHHCSS
T ss_pred             CCcEEEEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEE-EEcCCCceEecCcCHHHHHhhcccCC
Confidence            3567899999999999999998 799999999999999999999999999755 57888999 99999999876  1 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccc
Q psy9060         137 ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLG  216 (366)
Q Consensus       137 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (366)
                      ......+...+++++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|+
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~  135 (263)
T 3lke_A           80 DVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRA------------------------KFL  135 (263)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTC------------------------EEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCC------------------------EEe
Confidence            34455566777889999999999999999999999999999999999999987                        999


Q ss_pred             ccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecC-CCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         217 LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE-PLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       217 ~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~-~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      +||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+| +             +++.+.+.++|+
T Consensus       136 ~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~-------------~~l~~~a~~~a~  202 (263)
T 3lke_A          136 ENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENK-------------QELQERVKNYLK  202 (263)
T ss_dssp             CCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEESSH-------------HHHHHHHHHHHH
T ss_pred             CchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCCcEecCCh-------------hHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 6             789999999999


Q ss_pred             HHhcCccc-ccccCC
Q psy9060         296 QLASGKLK-INRIKP  309 (366)
Q Consensus       296 ~la~~~~~-~~~~~~  309 (366)
                      +|+..+.. +..+|.
T Consensus       203 ~la~~~~~a~~~~K~  217 (263)
T 3lke_A          203 AVSEGYVPAIAATKK  217 (263)
T ss_dssp             HHHTSCHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHH
Confidence            99988643 444453

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=6.7e-46  Score=349.94  Aligned_cols=208  Identities=33%  Similarity=0.581  Sum_probs=187.9

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .++.+.++++++|++|+||||+ + |++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++++.........
T Consensus         4 m~~~v~~~~~~~v~~itlnrp~-~-Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   80 (261)
T 3pea_A            4 MLKFLSVRVEDHIAVATLNHAP-A-NAMSSQVMHDVTELIDQVEKDDNIRVVV-IHGEGRFFSAGADIKEFTSVTEAKQA   80 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCTT-T-TCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSBCCBCGGGSSTTCCHHHH
T ss_pred             cccceEEEEECCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCceeCCcCHHHHhhcCchhHH
Confidence            3567899999999999999998 7 9999999999999999999999999755 58889999999999998765544444


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+....+.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~  136 (261)
T 3pea_A           81 TELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESA------------------------KLGLPEL  136 (261)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCGG
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC------------------------EEECccc
Confidence            5555666778999999999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       137 ~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  203 (261)
T 3pea_A          137 TLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAE-------------ETFLDDTLKVAKQIAGK  203 (261)
T ss_dssp             GGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHHTS
T ss_pred             ccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCH-------------HHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999987             67899999999999988


Q ss_pred             cc-cccccC
Q psy9060         301 KL-KINRIK  308 (366)
Q Consensus       301 ~~-~~~~~~  308 (366)
                      +. .+..+|
T Consensus       204 ~~~a~~~~K  212 (261)
T 3pea_A          204 SPATARAVL  212 (261)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            64 344444

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.8e-45  Score=347.73  Aligned_cols=208  Identities=34%  Similarity=0.593  Sum_probs=188.4

Q ss_pred             CCcceeEE-EeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHH
Q psy9060          61 STKHFKEK-AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTAD  138 (366)
Q Consensus        61 ~~~~i~~~-~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~  138 (366)
                      .++.+.++ .+++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.| +.||+|+|++++... +..
T Consensus         6 ~~~~v~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~-~~~   82 (265)
T 3kqf_A            6 QLQNISVDYATPHVVKISLNRER-QANSLSLALLEELQNILTQINEEANTRVVI-LTGAGEKAFCAGADLKERAGM-NEE   82 (265)
T ss_dssp             -CCSEEEECCSTTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EEESSSSEEECCBCHHHHTTC-CHH
T ss_pred             cCCeEEEEEeeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEE-EecCCCCeeeeCcChHHHhcc-CHH
Confidence            35678999 88999999999998 789999999999999999999999999755 57877 999999999998764 445


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+...++.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  138 (265)
T 3kqf_A           83 QVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESA------------------------SLGLT  138 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCc------------------------EEECc
Confidence            556666778899999999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       139 e~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  205 (265)
T 3kqf_A          139 ETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPV-------------HLLEEKAIEIAEKIA  205 (265)
T ss_dssp             GGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHHHHHH
T ss_pred             ccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             678999999999999


Q ss_pred             cCcc-cccccC
Q psy9060         299 SGKL-KINRIK  308 (366)
Q Consensus       299 ~~~~-~~~~~~  308 (366)
                      ..+. .+..+|
T Consensus       206 ~~~p~a~~~~K  216 (265)
T 3kqf_A          206 SNGPIAVRLAK  216 (265)
T ss_dssp             TSCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            8764 344444

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=3.3e-45  Score=346.46  Aligned_cols=207  Identities=23%  Similarity=0.354  Sum_probs=184.8

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQ  139 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~  139 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++||+|| ++|.|+.||+|+||+++...  .....
T Consensus         3 ~~~v~~~~~~~va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (268)
T 3i47_A            3 LSDLLYEIQDKVGLLTMNRIS-KHNAFDNQLLTEMRIRLDSAINDTNVRVIV-LKANGKHFSAGADLTWMQSMANFTEEE   80 (268)
T ss_dssp             CCSEEEEEETTEEEEEECCTT-TTTCBCHHHHHHHHHHHHHHHHCTTCSEEE-EEECSSCSBCSBCHHHHHHHHTCCHHH
T ss_pred             CCEEEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EECCCCCeeCCCChhhhhccccccHHH
Confidence            567899999999999999999 789999999999999999999999999755 58889999999999998652  23333


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      .......+..++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe  136 (268)
T 3i47_A           81 NLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSA------------------------RFCFSE  136 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCG
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCC------------------------EEECcc
Confidence            33445567789999999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++ +|++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.++|++|+.
T Consensus       137 ~~~Gl~p~~g~~-~l~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~~a~~la~  202 (268)
T 3i47_A          137 VKLGLIPAVISP-YVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPD-------------DTLLEFTLKYASQISN  202 (268)
T ss_dssp             GGGTCCCTTTHH-HHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-------------GGHHHHHHHHHHHHHT
T ss_pred             cccCCCcccHHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEeeCh-------------hHHHHHHHHHHHHHHc
Confidence            999999999888 89999999999999999999999999999999999997             6789999999999998


Q ss_pred             Cccc-ccccC
Q psy9060         300 GKLK-INRIK  308 (366)
Q Consensus       300 ~~~~-~~~~~  308 (366)
                      .+.. +..+|
T Consensus       203 ~~~~a~~~~K  212 (268)
T 3i47_A          203 NAPEAVKNSK  212 (268)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            8643 44444

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.7e-45  Score=349.63  Aligned_cols=209  Identities=30%  Similarity=0.456  Sum_probs=186.5

Q ss_pred             cCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      +.++.+.++++++|++|+||||+ +.|+||.+|+++|.++++.+  |+++|+|| ++|.|+.||+|+||+++... ....
T Consensus        13 m~~~~v~~~~~~~va~itlnrP~-~~Nal~~~~~~~L~~al~~~--d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~-~~~~   87 (275)
T 3hin_A           13 ADPSTLVVDTVGPVLTIGLNRPK-KRNALNDGLMAALKDCLTDI--PDQIRAVV-IHGIGDHFSAGLDLSELRER-DATE   87 (275)
T ss_dssp             CCGGGEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHTSSC--CTTCCEEE-EEESSSCSBCCBCGGGCCCC-CHHH
T ss_pred             CCCCeEEEEEECCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHh--CcCceEEE-EECCCCCccCCCCHHHHhcc-Chhh
Confidence            45678999999999999999998 79999999999999999998  67899755 58889999999999998653 3344


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      .......++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||
T Consensus        88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe  143 (275)
T 3hin_A           88 GLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASA------------------------YYALPE  143 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECGG
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC------------------------EEECch
Confidence            44555677889999999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|+|++|..+|++|+++|++++|+||+++||||+|||+             +++.+.+.+++++|+.
T Consensus       144 ~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~ia~  210 (275)
T 3hin_A          144 GSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIEN-------------GSAYDKALELGNRVAQ  210 (275)
T ss_dssp             GGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESS-------------SCHHHHHHHHHHHHTT
T ss_pred             hccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEEeCh-------------hHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             5688899999999998


Q ss_pred             Ccc-cccccCCC
Q psy9060         300 GKL-KINRIKPM  310 (366)
Q Consensus       300 ~~~-~~~~~~~~  310 (366)
                      .+. .+...|..
T Consensus       211 ~~p~a~~~~K~~  222 (275)
T 3hin_A          211 NAPLTNFAVLQA  222 (275)
T ss_dssp             SCHHHHHHHHTH
T ss_pred             CCHHHHHHHHHH
Confidence            754 35445543

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=5.8e-45  Score=346.26  Aligned_cols=206  Identities=25%  Similarity=0.457  Sum_probs=187.2

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++|+||||+ + |++|.+|+.+|.++++.++.|++||+|| ++|.|+.||+|+|++++... ......
T Consensus        23 ~~~v~~~~~~~Va~ItlnrP~-~-Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~-~~~~~~   98 (277)
T 4di1_A           23 NEFVSVVADQGLATLVVSRPP-T-NAMTRQVYREIVAAADELGRRDDIGAVV-LFGGHEIFSAGDDMPELRTL-NAPEAD   98 (277)
T ss_dssp             CCSEEEEEETTEEEEEECCTT-T-TCBCHHHHHHHHHHHHHHHHCTTCCEEE-EECCSSCSBCCBCHHHHHTC-CHHHHH
T ss_pred             CceEEEEEECCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHHhCCCcEEEE-EECCCCCEecCcCccccccc-ChHHHH
Confidence            467899999999999999998 7 9999999999999999999999999755 57889999999999998764 344555


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+...++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||++
T Consensus        99 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f~~pe~~  154 (277)
T 4di1_A           99 TAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNV------------------------KFGATEIL  154 (277)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECGGGG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCC------------------------EEECcccc
Confidence            666777889999999999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..+
T Consensus       155 lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~~a~~la~~~  221 (277)
T 4di1_A          155 AGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAP-------------DDVYDSAVAWARRYLECP  221 (277)
T ss_dssp             GTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHHHTTTTSC
T ss_pred             cCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCh-------------hHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999997             678999999999998876


Q ss_pred             cc-ccccC
Q psy9060         302 LK-INRIK  308 (366)
Q Consensus       302 ~~-~~~~~  308 (366)
                      .. +...|
T Consensus       222 ~~a~~~~K  229 (277)
T 4di1_A          222 PRALAAAK  229 (277)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            43 44444

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=1.3e-44  Score=338.99  Aligned_cols=204  Identities=23%  Similarity=0.361  Sum_probs=181.4

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEee-CCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-KPGCFIAGADISMLAACKTADQVKQI  143 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~  143 (366)
                      +.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++| .|+.||+|+|++++......+....+
T Consensus         2 v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~   79 (250)
T 2a7k_A            2 VFEENSDEVRVITLDHPN-KHNPFSRTLETSVKDALARANADDSVRAVV-VYGGAERSFSAGGDFNEVKQLSRSEDIEEW   79 (250)
T ss_dssp             EEEEEETTEEEEEECCSS-TTCBCCHHHHHHHHHHHHHHHHCTTCCEEE-EECCTTSCSBCBSCHHHHHTC-CHHHHHHH
T ss_pred             eEEEeeCCEEEEEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EECCCCCCccCCcCHHHHhhcCchhhHHHH
Confidence            567888999999999998 799999999999999999999999999755 578 88999999999998654332222344


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      ...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++|
T Consensus        80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~G  135 (250)
T 2a7k_A           80 IDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTA------------------------NFVMPELKHG  135 (250)
T ss_dssp             HHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTC------------------------EEECCGGGGT
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCC------------------------EEeCcccccC
Confidence            4557788999999999999999999999999999999999999987                        9999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-  302 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-  302 (366)
                      ++|++|++ +|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..++ 
T Consensus       136 l~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~~~  201 (250)
T 2a7k_A          136 IGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-------------SALLDAAITQAHVMASYPAS  201 (250)
T ss_dssp             CCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-------------HHHHHHHHHHHHHHHTSCHH
T ss_pred             CCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCcceecCH-------------HHHHHHHHHHHHHHHcCCHH
Confidence            99999999 99999999999999999999999999999999999987             7899999999999998764 


Q ss_pred             cccccC
Q psy9060         303 KINRIK  308 (366)
Q Consensus       303 ~~~~~~  308 (366)
                      .+..+|
T Consensus       202 a~~~~K  207 (250)
T 2a7k_A          202 AFINTK  207 (250)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            343344

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=2.5e-44  Score=339.52  Aligned_cols=206  Identities=22%  Similarity=0.345  Sum_probs=181.7

Q ss_pred             CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-----
Q psy9060          62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-----  135 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-----  135 (366)
                      ++.+.++. +++|++|+||||+ + |++|.+|+.+|.++++.++.|+++|+|| ++|.|+.||+|+|++++....     
T Consensus         5 ~~~~~~~~~~~~v~~itlnrP~-~-Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (263)
T 3l3s_A            5 QDGLLGEVLSEGVLTLTLGRAP-A-HPLSRAMIAALHDALRRAMGDDHVHVLV-IHGPGRIFCAGHDLKEIGRHRADPDE   81 (263)
T ss_dssp             ---CEEEEESSSEEEEEECSTT-T-CCCCHHHHHHHHHHHHHHHTCTTCCEEE-EECCSSEEECCSCSCCCCC-----CC
T ss_pred             ccceEEEEeeCCEEEEEECCCC-C-CCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCccCCcChHHHhhccccccc
Confidence            34556665 7899999999998 7 9999999999999999999999999755 588899999999999986531     


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         136 TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                      +......+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f  137 (263)
T 3l3s_A           82 GRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAA------------------------RF  137 (263)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTC------------------------EE
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCC------------------------EE
Confidence            234455666778899999999999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|++ ++|++++|+|++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.++++
T Consensus       138 ~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~  203 (263)
T 3l3s_A          138 CLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPE-------------AALATHVADLAG  203 (263)
T ss_dssp             ECCTTTTTSC-CHHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEECCH-------------HHHHHHHHHHHH
T ss_pred             eCchhccCCC-CccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-------------HHHHHHHHHHHH
Confidence            9999999999 57899999999999999999999999999999999999999987             789999999999


Q ss_pred             HHhcCcc-cccccC
Q psy9060         296 QLASGKL-KINRIK  308 (366)
Q Consensus       296 ~la~~~~-~~~~~~  308 (366)
                      +|+..+. .+..+|
T Consensus       204 ~la~~~~~a~~~~K  217 (263)
T 3l3s_A          204 ALAARNQAPLRRGL  217 (263)
T ss_dssp             HHHSSCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHH
Confidence            9998864 344445

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=8.9e-45  Score=343.61  Aligned_cols=207  Identities=23%  Similarity=0.352  Sum_probs=183.1

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC---HHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---ADQ  139 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~---~~~  139 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++.....   ...
T Consensus         3 ~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T 1nzy_A            3 EAIGHRVEDGVAEITIKLPR-HRNALSVKAMQEVTDALNRAEEDDSVGAVM-ITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             SSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHhhCCCeeEEE-EECCCCCcccCcCHHHHhhcccccChHH
Confidence            35788889999999999998 799999999999999999999999999755 5888899999999998865310   111


Q ss_pred             H-HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         140 V-KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       140 ~-~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      . ..+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~p  136 (269)
T 1nzy_A           81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA------------------------KFVCA  136 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCC------------------------EEeCc
Confidence            1 2344556788999999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       137 e~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  203 (269)
T 1nzy_A          137 WHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-------------DEFREVAWKVARELA  203 (269)
T ss_dssp             HHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECH-------------HHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             789999999999999


Q ss_pred             cCcc-cccccC
Q psy9060         299 SGKL-KINRIK  308 (366)
Q Consensus       299 ~~~~-~~~~~~  308 (366)
                      ..+. .+...|
T Consensus       204 ~~~p~a~~~~K  214 (269)
T 1nzy_A          204 AAPTHLQVMAK  214 (269)
T ss_dssp             HSCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            8754 333344

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.3e-44  Score=344.15  Aligned_cols=209  Identities=24%  Similarity=0.446  Sum_probs=186.9

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC---CH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK---TA  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~---~~  137 (366)
                      .++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++|++|| ++|.|+.||+|+|++++....   ..
T Consensus        15 ~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   92 (279)
T 3g64_A           15 EWRHLRVEITDGVATVTLARPD-KLNALTFEAYADLRDLLAELSRRRAVRALV-LAGEGRGFCSGGDVDEIIGATLSMDT   92 (279)
T ss_dssp             CCSSEEEEEETTEEEEEESCGG-GTTCBCHHHHHHHHHHHHHHHHTTCCSEEE-EEECSSCSBCCBCTTTTHHHHTTCCH
T ss_pred             CCCeEEEEEECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCceecCcCHHHHhhccccchh
Confidence            4678999999999999999998 789999999999999999999999999755 588889999999999986532   12


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      .....+.+.+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~  148 (279)
T 3g64_A           93 ARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPST------------------------RFAF  148 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTC------------------------EEEC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCC------------------------EEeC
Confidence            2333455667889999999999999999999999999999999999999987                        9999


Q ss_pred             cchhccCC-CChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLL-PGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       218 pe~~~Gl~-p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      ||+++|++ |++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++
T Consensus       149 pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~  215 (279)
T 3g64_A          149 LFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEE-------------GRADEAARTLARR  215 (279)
T ss_dssp             CGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCT-------------TCHHHHHHHHHHH
T ss_pred             chhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCc-------------hHHHHHHHHHHHH
Confidence            99999999 999999999999999999999999999999999999999999987             5688999999999


Q ss_pred             HhcCcc-cccccC
Q psy9060         297 LASGKL-KINRIK  308 (366)
Q Consensus       297 la~~~~-~~~~~~  308 (366)
                      |+..+. .+..+|
T Consensus       216 la~~~~~a~~~~K  228 (279)
T 3g64_A          216 LADGPALAHAQTK  228 (279)
T ss_dssp             HHTSCHHHHHHHH
T ss_pred             HHhCCHHHHHHHH
Confidence            998864 344444

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=9e-46  Score=348.04  Aligned_cols=209  Identities=22%  Similarity=0.310  Sum_probs=179.0

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .+..+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++.........
T Consensus         4 ~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (256)
T 3qmj_A            4 SMVTLQIDDDNRVRTLTLNRPE-ALNAFNEALYDATAQALLDAADDPQVAVVL-LTGSGRGFSAGTDLAEMQARITDPNF   81 (256)
T ss_dssp             --CCEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTEEECCBCHHHHHHHHHSSSC
T ss_pred             CcceEEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCcccCcCHHHHhhcccchhH
Confidence            3457889999999999999998 789999999999999999999999999755 58889999999999988542100000


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ......++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~  137 (256)
T 3qmj_A           82 SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTA------------------------RLKCPFT  137 (256)
T ss_dssp             CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTC------------------------EEECCGG
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCC------------------------EEECccc
Confidence            1112345778899999999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       138 ~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  204 (256)
T 3qmj_A          138 SLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSP-------------EELLPEARRHAEILAAK  204 (256)
T ss_dssp             GC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHHTS
T ss_pred             ccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-------------hHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             67899999999999987


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +..+|
T Consensus       205 ~~~a~~~~K  213 (256)
T 3qmj_A          205 PISSLMAVK  213 (256)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            643 44444

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.4e-44  Score=340.12  Aligned_cols=205  Identities=25%  Similarity=0.463  Sum_probs=176.8

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++...........
T Consensus         3 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (257)
T 2ej5_A            3 ETIRYEVKGQVAWLTLNRPD-QLNAFTEQMNAEVTKALKQAGADPNVRCVV-ITGAGRAFCAGEDLSGVTEEMDHGDVLR   80 (257)
T ss_dssp             SSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSCSBCCBCC-------CHHHHHH
T ss_pred             CceEEEeECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCCccCCcCHHHHhhccchhHHHH
Confidence            45788899999999999998 789999999999999999999999999755 5788899999999998865332221111


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      .  .+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++
T Consensus        81 ~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~  134 (257)
T 2ej5_A           81 S--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKA------------------------SFAPAFIHV  134 (257)
T ss_dssp             H--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCGGGG
T ss_pred             H--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCC------------------------EEeCccccc
Confidence            1  35778899999999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..+.
T Consensus       135 Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~~  201 (257)
T 2ej5_A          135 GLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPL-------------SDWEEEVKQFAERLSAMPT  201 (257)
T ss_dssp             TCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEECG-------------GGHHHHHHHHHHHHHTSCH
T ss_pred             CCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceecCh-------------hHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999999999999999987             5788999999999998764


Q ss_pred             -cccccC
Q psy9060         303 -KINRIK  308 (366)
Q Consensus       303 -~~~~~~  308 (366)
                       .+...|
T Consensus       202 ~a~~~~K  208 (257)
T 2ej5_A          202 KAIGLIK  208 (257)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence             344444

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=8.9e-45  Score=341.16  Aligned_cols=202  Identities=24%  Similarity=0.449  Sum_probs=181.0

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++.+    .  
T Consensus         4 ~~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~----~--   75 (255)
T 3p5m_A            4 SMNGISVEHDGAVLRIRLDRPE-KLNAVDTPMLEELSVHIRDAEADESVRAVL-LTGAGRAFCSGGDLTGGDT----A--   75 (255)
T ss_dssp             CBTTEEEEEETTEEEEEECCGG-GTTEECHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSCSBCEECC---CH----H--
T ss_pred             CCceEEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCCccCCCChhhhcc----h--
Confidence            3456899999999999999998 789999999999999999999999999755 5888899999999998762    1  


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                       .+...++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+
T Consensus        76 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~  130 (255)
T 3p5m_A           76 -GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPAS------------------------YFQLAFT  130 (255)
T ss_dssp             -HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTC------------------------EEECGGG
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCc------------------------EEeCccc
Confidence             445667889999999999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       131 ~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  197 (255)
T 3p5m_A          131 RVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSA-------------DEYESVLTDVLRSVSGG  197 (255)
T ss_dssp             GGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCT-------------TCHHHHHHHHHHHHHTS
T ss_pred             ccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCH-------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             56889999999999988


Q ss_pred             cc-cccccC
Q psy9060         301 KL-KINRIK  308 (366)
Q Consensus       301 ~~-~~~~~~  308 (366)
                      +. .+..+|
T Consensus       198 ~~~a~~~~K  206 (255)
T 3p5m_A          198 PTLAFGWTK  206 (255)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            64 344444

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-44  Score=346.30  Aligned_cols=208  Identities=26%  Similarity=0.415  Sum_probs=180.6

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH----
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA----  137 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~----  137 (366)
                      ...+.++++++|++|+||||+ +.|+||.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++......    
T Consensus        23 ~~~v~~~~~~~va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~G~~F~aG~Dl~~~~~~~~~~~~~  100 (290)
T 3sll_A           23 SFVLVDRPRPEIALVTLNRPE-RMNAMAFDVMLPFKQMLVDISHDNDVRAVV-ITGAGKGFCSGADQKSAGPIPHIGGLT  100 (290)
T ss_dssp             CCEEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHTCTTCCEEE-EEESTTCSBCC------CCCSSCTTCC
T ss_pred             CeEEEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHcCCCeeEEE-EECCCCCeeCCcChHHHhccccccccc
Confidence            356888999999999999998 799999999999999999999999999755 58889999999999988653221    


Q ss_pred             --HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         138 --DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       138 --~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                        .....+...++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f  156 (290)
T 3sll_A          101 QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDA------------------------YF  156 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EE
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCC------------------------EE
Confidence              1234556677889999999999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCC-hhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPG-AGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       216 ~~pe~~~Gl~p~-~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      ++||+++|++|+ +|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++
T Consensus       157 ~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~~a  223 (290)
T 3sll_A          157 RAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS-------------ESLLEECYAIG  223 (290)
T ss_dssp             ECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHHHH
T ss_pred             ECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCh-------------hHHHHHHHHHH
Confidence            999999999999 9999999999999999999999999999999999999999987             67889999999


Q ss_pred             HHHhcCcc-cccccC
Q psy9060         295 SQLASGKL-KINRIK  308 (366)
Q Consensus       295 ~~la~~~~-~~~~~~  308 (366)
                      ++|+..+. .+..+|
T Consensus       224 ~~la~~~~~a~~~~K  238 (290)
T 3sll_A          224 ERIAGFSRPGIELTK  238 (290)
T ss_dssp             HHHHHSCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH
Confidence            99998764 344444

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.4e-44  Score=381.40  Aligned_cols=235  Identities=35%  Similarity=0.531  Sum_probs=198.5

Q ss_pred             EEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHH
Q psy9060          67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKS  146 (366)
Q Consensus        67 ~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  146 (366)
                      ++.+|+|++||||||+  +|+||.+|+++|.+++++++.|++|++|| ++|.|+.||+|+||+++.......       .
T Consensus        25 ~~~~~~Va~itlnrP~--~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aGaDl~~~~~~~~~~-------~   94 (742)
T 3zwc_A           25 LRLPHSLAMIRLCNPP--VNAVSPTVIREVRNGLQKAGSDHTVKAIV-ICGANGNFCAGADIHGFSAFTPGL-------A   94 (742)
T ss_dssp             EECSTTEEEEEECCTT--TTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EEESTTCSBCCBCSSSCCSSCSCS-------H
T ss_pred             EEeeCCEEEEEeCCCc--ccCCCHHHHHHHHHHHHHHhhCCCCeEEE-EECCCCccccCcChHhhhccChhH-------H
Confidence            4557999999999996  69999999999999999999999999755 588999999999999987654322       2


Q ss_pred             HHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCC
Q psy9060         147 GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLP  226 (366)
Q Consensus       147 ~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p  226 (366)
                      +++++.+|.+++|||||+|||+|+|||++|+|+||||||++++                        +|++||+++|++|
T Consensus        95 ~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a------------------------~fg~pev~lGl~P  150 (742)
T 3zwc_A           95 LGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKA------------------------RVGLPEVTLGILP  150 (742)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTC------------------------EEECGGGGGTCCC
T ss_pred             HHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCC------------------------EEECcccCcccCC
Confidence            3577889999999999999999999999999999999999987                        9999999999999


Q ss_pred             ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcccccc
Q psy9060         227 GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINR  306 (366)
Q Consensus       227 ~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~~~~  306 (366)
                      ++||+++|||++|..+|++|++||+.++|+||+++||||+|+++             + +.+.|.++|++++++++...+
T Consensus       151 g~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~-------------d-~~~~A~~~A~~ia~~~~~~~~  216 (742)
T 3zwc_A          151 GARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKS-------------D-PVEEAIKFAQKIIDKPIEPRR  216 (742)
T ss_dssp             TTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESS-------------C-HHHHHHHHHHHHTTSCSGGGC
T ss_pred             CccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEecCc-------------h-hhHHHHHHHHHHhcCCchhhh
Confidence            99999999999999999999999999999999999999999986             2 356789999999998765444


Q ss_pred             cC-CCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060         307 IK-PMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT  359 (366)
Q Consensus       307 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~  359 (366)
                      .. ... .        ........+..+.++..++.. +||||.+++++++...
T Consensus       217 ~~~~~~-~--------~~~~~~~~~~~~~~~~~k~~~-~~~A~~~~~~~v~~~~  260 (742)
T 3zwc_A          217 IFNKPV-P--------SLPNMDSVFAEAIAKVRKQYP-GVLAPETCVRSIQASV  260 (742)
T ss_dssp             GGGSCC-C--------CCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred             hhcccc-c--------ccchhhhhHHHHHHHHhhhcc-chhHHHHHHHHHHHHh
Confidence            32 111 1        111223456666666666555 5999999999998654

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=7.9e-45  Score=342.99  Aligned_cols=206  Identities=32%  Similarity=0.511  Sum_probs=183.9

Q ss_pred             CCcceeEEEeCC-EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~-Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      .++.+.++++++ |++||||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++..... ..
T Consensus         7 ~~~~i~~~~~~~gv~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~-~~   83 (263)
T 3moy_A            7 TYTTIATSRPVAGVGLIRLDRPD-ALNALNQTLEAEVLDAARDFDADLEIGAIV-VTGSERAFAAGADIAEMVTLTP-HQ   83 (263)
T ss_dssp             CCSSEEEECCSTTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EECCSSEEEESBCHHHHTTCCH-HH
T ss_pred             CCCeEEEEEeCCeEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCeeCCcChHHHhccCc-hh
Confidence            356788998888 9999999998 789999999999999999999999999755 5788999999999999876432 22


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                        .....++.++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        84 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe  137 (263)
T 3moy_A           84 --ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTA------------------------RFGQPE  137 (263)
T ss_dssp             --HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTC------------------------EEECGG
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCC------------------------EEeCcc
Confidence              223456678899999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+.
T Consensus       138 ~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~  204 (263)
T 3moy_A          138 ITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPA-------------ADLLDEALAVAQRIAR  204 (263)
T ss_dssp             GGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-------------GGHHHHHHHHHHHHHH
T ss_pred             cccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCc-------------hHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             6788999999999998


Q ss_pred             Ccc-cccccC
Q psy9060         300 GKL-KINRIK  308 (366)
Q Consensus       300 ~~~-~~~~~~  308 (366)
                      .+. .+..+|
T Consensus       205 ~~~~a~~~~K  214 (263)
T 3moy_A          205 MSRPAGRAVK  214 (263)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            764 344444

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=6.5e-44  Score=378.57  Aligned_cols=254  Identities=29%  Similarity=0.452  Sum_probs=210.6

Q ss_pred             cceeEE-EeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCC-cEEcCCCcchhhhcC--CHH
Q psy9060          63 KHFKEK-AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADISMLAACK--TAD  138 (366)
Q Consensus        63 ~~i~~~-~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~-~F~aG~Dl~~~~~~~--~~~  138 (366)
                      +.+.++ .+++|++||||||+.+.|+||.+|+++|.++++.++.|+++++||| +| |+ .||+|+||+++....  ...
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl-tg-g~~~F~aG~Dl~~~~~~~~~~~~   83 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIV-SS-GKDVFIVGADITEFVENFKLPDA   83 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEE-EE-SSSSSBBCCCHHHHHHHTTSCHH
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEE-EC-CCCeEeCCcCHHHHhhcccCCHH
Confidence            457788 6789999999999645899999999999999999999999998665 56 55 999999999986532  222


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a------------------------~fglp  139 (715)
T 1wdk_A           84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA------------------------KIGLP  139 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTC------------------------EEECG
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCC------------------------EEeCh
Confidence            334455667889999999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|+|++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.|.+++++++
T Consensus       140 ev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  206 (715)
T 1wdk_A          140 EVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTA-------------DKLGAAALDLIKRAI  206 (715)
T ss_dssp             GGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-------------GGHHHHHHHHHHHHH
T ss_pred             hhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-------------HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999986             678999999999998


Q ss_pred             cCcccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060         299 SGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT  359 (366)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~  359 (366)
                      .....+..... . .+ +. ....+..+...+..+++++.++++|+||||..+++++....
T Consensus       207 ~~~~~~~~~~~-~-~~-~p-~~~~~~~~~~~~~~~k~~~~~~~~g~~~A~~~~k~~v~~~~  263 (715)
T 1wdk_A          207 SGELDYKAKRQ-P-KL-EK-LKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAA  263 (715)
T ss_dssp             TTSSCHHHHHG-G-GG-SC-CSCCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hccCCcchhcc-c-cc-Cc-cccCchhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHh
Confidence            76211111100 0 00 00 00012233446888899999999999999999999997654

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=2.5e-44  Score=338.62  Aligned_cols=205  Identities=32%  Similarity=0.526  Sum_probs=181.3

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      +..+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++.... .. ..
T Consensus         4 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~-~~-~~   79 (258)
T 2pbp_A            4 FVSIAARQEGAVGIIELARPD-VLNALSRQMVAEIVAAVEAFDRNEKVRVIV-LTGRGRAFAAGADIQEMAKDD-PI-RL   79 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTEEECCCCHHHHHTCC-HH-HH
T ss_pred             cceEEEEeeCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCCccCCcCHHHHhccc-ch-hH
Confidence            446788889999999999998 789999999999999999999999999755 578899999999999986532 11 22


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+...+ +++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||++
T Consensus        80 ~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~  134 (258)
T 2pbp_A           80 EWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAA------------------------EFGFPEVN  134 (258)
T ss_dssp             HHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTC------------------------EEECGGGG
T ss_pred             HHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCC------------------------EEECcccc
Confidence            223334 67888999999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..+
T Consensus       135 ~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~  201 (258)
T 2pbp_A          135 LGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSP-------------ELLMEETMRLAGRLAEQP  201 (258)
T ss_dssp             GTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECG-------------GGHHHHHHHHHHHHHTSC
T ss_pred             cCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCh-------------HHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999987             678899999999999876


Q ss_pred             c-cccccC
Q psy9060         302 L-KINRIK  308 (366)
Q Consensus       302 ~-~~~~~~  308 (366)
                      . .+..+|
T Consensus       202 ~~a~~~~K  209 (258)
T 2pbp_A          202 PLALRLIK  209 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            4 344444

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=3e-44  Score=343.07  Aligned_cols=207  Identities=20%  Similarity=0.354  Sum_probs=183.8

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ...+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+||+++..........
T Consensus        32 ~~~v~~~~~~~V~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~~~  109 (287)
T 2vx2_A           32 PRPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVII-ISAEGPVFSSGHDLKELTEEQGRDYHA  109 (287)
T ss_dssp             CCSEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHTTTTCTTCCEEE-EEESSSEEECCSCCC-CCGGGCHHHHH
T ss_pred             CcceEEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EECCCCCccCCcCHHHHhcccchhHHH
Confidence            357889999999999999998 789999999999999999999999999755 588899999999999886533333334


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||++
T Consensus       110 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f~~pe~~  165 (287)
T 2vx2_A          110 EVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKS------------------------SFATPGVN  165 (287)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCGGG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCC------------------------EEECchhh
Confidence            455567788999999999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|+++ |++++|..+|++|+++|+.++|+||+++||||+|||+             +++.+.+.+++++|+..+
T Consensus       166 lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~  231 (287)
T 2vx2_A          166 VGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPE-------------AELQEETMRIARKIASLS  231 (287)
T ss_dssp             GTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHHHHHHTSC
T ss_pred             hCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceecCH-------------HHHHHHHHHHHHHHHcCC
Confidence            99999999999 9999999999999999999999999999999999987             678899999999999876


Q ss_pred             cc-ccccC
Q psy9060         302 LK-INRIK  308 (366)
Q Consensus       302 ~~-~~~~~  308 (366)
                      .. +..+|
T Consensus       232 p~a~~~~K  239 (287)
T 2vx2_A          232 RPVVSLGK  239 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            43 33344

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.6e-44  Score=343.33  Aligned_cols=206  Identities=31%  Similarity=0.504  Sum_probs=181.7

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      +++.+.++++++|++|+||||+ +.|+||.+|+++|.++++.++.|+++++|| ++|.|+.||+|+||+++..... .. 
T Consensus        23 ~~~~v~~~~~~~va~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~-~~-   98 (278)
T 3h81_A           23 TYETILVERDQRVGIITLNRPQ-ALNALNSQVMNEVTSAATELDDDPDIGAII-ITGSAKAFAAGADIKEMADLTF-AD-   98 (278)
T ss_dssp             CCSSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EECCSSEEECCBCSHHHHTCCH-HH-
T ss_pred             CCCeEEEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHhhCCCeEEEE-EECCCCCeecCcCHHHHhccCh-hh-
Confidence            3567999999999999999998 789999999999999999999999999755 5788999999999999876432 22 


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                       .......+.+.++.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+
T Consensus        99 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f~~pe~  153 (278)
T 3h81_A           99 -AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTA------------------------KFGQPEI  153 (278)
T ss_dssp             -HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTC------------------------EEECGGG
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCC------------------------EEECchh
Confidence             112222223788999999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       154 ~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  220 (278)
T 3h81_A          154 KLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPA-------------DDLLTEARATATTISQM  220 (278)
T ss_dssp             GGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHHHHHHTS
T ss_pred             hcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEEeCh-------------hHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999997             67889999999999988


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +..+|
T Consensus       221 ~p~a~~~~K  229 (278)
T 3h81_A          221 SASAARMAK  229 (278)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            643 44444

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=1.8e-44  Score=340.53  Aligned_cols=208  Identities=18%  Similarity=0.259  Sum_probs=184.1

Q ss_pred             CCcceeEEEeC-CEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVG-DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~-~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      .++.+.+++++ +|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+||+++....+...
T Consensus        21 ~~~~i~~~~~~~~Va~ItLnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~   98 (263)
T 2j5g_A           21 KYENLHFHRDENGILEVRMHTNG-SSLVFTGKTHREFPDAFYDISRDRDNRVVI-LTGSGDAWMAEIDFPSLGDVTNPRE   98 (263)
T ss_dssp             SCTTEEEEECTTCEEEEEECBTT-BSCEECHHHHHHHHHHHHHHHHCTTCCEEE-EECBTTEEECEECSGGGCCTTSHHH
T ss_pred             CCCeEEEEEcCCCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EECCCCCcccCcCHHHHhccCCHHH
Confidence            45678899988 99999999998 789999999999999999999999999755 5788899999999999865333333


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc-c
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL-P  218 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-p  218 (366)
                      ...+...+++++.++.++||||||+|||+|+ ||++|+++||+|||++++                        +|++ |
T Consensus        99 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a------------------------~f~~~p  153 (263)
T 2j5g_A           99 WDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENT------------------------VFQDMP  153 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTC------------------------EECCCH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCC------------------------EEecCc
Confidence            3344455678889999999999999999999 599999999999999987                        8999 9


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       154 e~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  220 (263)
T 2j5g_A          154 HLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-------------SKLMERAWEIARTLA  220 (263)
T ss_dssp             HHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECG-------------GGHHHHHHHHHHHHH
T ss_pred             ccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecCh-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             678899999999999


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      ..+.. +...|
T Consensus       221 ~~~~~a~~~~K  231 (263)
T 2j5g_A          221 KQPTLNLRYTR  231 (263)
T ss_dssp             TSCHHHHHHHH
T ss_pred             hCCHHHHHHHH
Confidence            87643 43344

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=1.7e-44  Score=342.91  Aligned_cols=210  Identities=24%  Similarity=0.387  Sum_probs=181.5

Q ss_pred             cCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---CC
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC---KT  136 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~---~~  136 (366)
                      ..++.+.++++++|++|+||||+ +.|+||.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++...   ..
T Consensus         6 ~~~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~   83 (276)
T 2j5i_A            6 GRWKTVKVEIEDGIAFVILNRPE-KRNAMSPTLNREMIDVLETLEQDPAAGVLV-LTGAGEAWTAGMDLKEYFREVDAGP   83 (276)
T ss_dssp             TCCSSEEEEEETEEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHTCTTEEEEE-EEESTTCSBCCBCHHHHHHHHHHSC
T ss_pred             CCCceEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCCcCCcChhhHhhccccch
Confidence            34667889999999999999998 799999999999999999999999999755 58889999999999987431   11


Q ss_pred             HHHHHHHHHHHHHH-HHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         137 ADQVKQISKSGQQI-LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       137 ~~~~~~~~~~~~~~-~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                      ......+......+ +..+.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f  139 (276)
T 2j5i_A           84 EILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA------------------------TF  139 (276)
T ss_dssp             TTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTC------------------------EE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCC------------------------EE
Confidence            11112222223343 677889999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.++++
T Consensus       140 ~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~  206 (276)
T 2j5i_A          140 GLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-------------AQLREVTIELAR  206 (276)
T ss_dssp             ECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECH-------------HHHHHHHHHHHH
T ss_pred             eCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH-------------HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987             789999999999


Q ss_pred             HHhcCcc-cccccC
Q psy9060         296 QLASGKL-KINRIK  308 (366)
Q Consensus       296 ~la~~~~-~~~~~~  308 (366)
                      +|+..++ .+...|
T Consensus       207 ~la~~~p~a~~~~K  220 (276)
T 2j5i_A          207 NLLEKNPVVLRAAK  220 (276)
T ss_dssp             HHHTSCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHH
Confidence            9998764 344444

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=9.4e-45  Score=344.55  Aligned_cols=209  Identities=21%  Similarity=0.327  Sum_probs=177.6

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEee-----CC-CcEEcCCCcchhhhc
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-----KP-GCFIAGADISMLAAC  134 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g-----~g-~~F~aG~Dl~~~~~~  134 (366)
                      .++.+.++++++|++|+||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|     .| ++||+|+||+++...
T Consensus         8 ~~~~v~~~~~~~va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~~~~~~G~~~F~aG~Dl~~~~~~   85 (275)
T 4eml_A            8 HYDDILYYKAGGIAKIVINRPH-KRNAFRPQTVFELYDAFCNAREDNRIGVVL-LTGAGPHSDGKYAFCSGGDQSVRGEG   85 (275)
T ss_dssp             ECSSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEECCCCTTSCCEEECCBCCC-----
T ss_pred             CCceEEEEEECCEEEEEecCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EeCCCcCcCCCCceeCCcChhhhhcc
Confidence            4567999999999999999998 789999999999999999999999999755 577     66 599999999988642


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         135 KTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                      .............+.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~  141 (275)
T 4eml_A           86 GYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNA------------------------I  141 (275)
T ss_dssp             ---------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------E
T ss_pred             cccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC------------------------E
Confidence            1111111111235678889999999999999999999999999999999999987                        9


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      |++||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.++|
T Consensus       142 f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a  208 (275)
T 4eml_A          142 FGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPV-------------DRLEEEGIQWA  208 (275)
T ss_dssp             EECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHH
T ss_pred             EECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCH-------------HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999997             67899999999


Q ss_pred             HHHhcCcc-cccccC
Q psy9060         295 SQLASGKL-KINRIK  308 (366)
Q Consensus       295 ~~la~~~~-~~~~~~  308 (366)
                      ++|+..+. .+...|
T Consensus       209 ~~la~~~~~a~~~~K  223 (275)
T 4eml_A          209 KEILSKSPLAIRCLK  223 (275)
T ss_dssp             HHHHTSCHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHH
Confidence            99998864 344444

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=5.3e-44  Score=331.65  Aligned_cols=205  Identities=20%  Similarity=0.248  Sum_probs=182.2

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++|+||||+  .|++|.+|+++|.++++.+++| ++|+|| ++|.|+.||+|+|++++.... ......
T Consensus         5 ~~v~~~~~~~v~~itlnrp~--~Nal~~~~~~~L~~al~~~~~d-~vr~vv-ltg~g~~F~aG~Dl~~~~~~~-~~~~~~   79 (233)
T 3r6h_A            5 GPVTYTHDDAIGVIRMDDGK--VNVLGPTMQQALNEAIDAADRD-NVGALV-IAGNHRVFSGGFDLKVLTSGE-AKPAID   79 (233)
T ss_dssp             CCEEEEEETTEEEEEECCSS--SCCCSHHHHHHHHHHHHHHHHH-TCSEEE-EECCSSEEECCSCHHHHC----CHHHHH
T ss_pred             CceEEEEECCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHhC-CCeEEE-EECCCCCccCCcChHHHhccC-hHHHHH
Confidence            46889999999999999985  6999999999999999999987 588654 589999999999999987642 234455


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +....++++.++.++|||+||+|||+|+|||++|+++||+|||++++                        +|++||+++
T Consensus        80 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~  135 (233)
T 3r6h_A           80 MLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAY------------------------NVQANEVAI  135 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTC------------------------CEECCGGGG
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCc------------------------EEECchhhh
Confidence            66777889999999999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|+++++++++|..+|++++++|++++|+||+++||||+|+|+             +++.+.+.+++++|+..++
T Consensus       136 Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~  202 (233)
T 3r6h_A          136 GMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLP-------------EVVLSRAEEAAREFAGLNQ  202 (233)
T ss_dssp             TCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEECCG-------------GGHHHHHHHHHHHHHTSCH
T ss_pred             CCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeCH-------------HHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999999987             6789999999999998764


Q ss_pred             c-ccccCC
Q psy9060         303 K-INRIKP  309 (366)
Q Consensus       303 ~-~~~~~~  309 (366)
                      . +...|.
T Consensus       203 ~a~~~~K~  210 (233)
T 3r6h_A          203 QAHNATKL  210 (233)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            3 444453

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=1.6e-44  Score=344.98  Aligned_cols=210  Identities=25%  Similarity=0.379  Sum_probs=182.8

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      .++.+.++++++|++||||||+  .|+||.+|+.+|.++++.++.|++||+||| +|.| ++||+|+||+++........
T Consensus         7 ~~~~i~~~~~~~va~itlnrP~--~Nal~~~~~~~L~~al~~~~~d~~vr~vVl-tg~g~~~FcaG~Dl~~~~~~~~~~~   83 (287)
T 3gkb_A            7 AYSTLRVSSEHGVARIILDNPP--VNVIGATMMRELRTVLTTLADDSSVRVIVF-SSADPEFFLAHVDMRIGEKMDALQE   83 (287)
T ss_dssp             CCSSEEEEEETTEEEEEECCTT--TTCBCHHHHHHHHHHHHHHHTCTTCCEEEE-EESSSSEEECCBCTTGGGSHHHHHH
T ss_pred             CCCeEEEEEECCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHcCCCeeEEEE-ecCCCCceeCCcCHHHHhhccccch
Confidence            4678999999999999999997  599999999999999999999999997655 7766 79999999998864211000


Q ss_pred             H----HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEec-CCccCCCchhhhhhhhhhhhccccccc
Q psy9060         140 V----KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVK-DKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       140 ~----~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~-~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                      .    ......++.++..+.++||||||+|||+|+|||++|+++||+|||++ ++                        +
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a------------------------~  139 (287)
T 3gkb_A           84 LAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETA------------------------G  139 (287)
T ss_dssp             HHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTC------------------------E
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCc------------------------E
Confidence            0    11123457789999999999999999999999999999999999999 77                        9


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      |++||+++|++|++|++++|++++|..+|++|++||++++|+||+++||||+|+|+             +++.+.+.++|
T Consensus       140 f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~lA  206 (287)
T 3gkb_A          140 LGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA-------------DELDEYVDRVA  206 (287)
T ss_dssp             EECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-------------HHHHHHHHHHH
T ss_pred             EECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh-------------hHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987             78999999999


Q ss_pred             HHHhcCcc-cccccCCC
Q psy9060         295 SQLASGKL-KINRIKPM  310 (366)
Q Consensus       295 ~~la~~~~-~~~~~~~~  310 (366)
                      ++|+..+. .+...|..
T Consensus       207 ~~la~~~p~a~~~~K~~  223 (287)
T 3gkb_A          207 RNIAALPDGVIEAAKRS  223 (287)
T ss_dssp             HHHHTSCTTHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            99998864 34444533

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=4.3e-44  Score=340.85  Aligned_cols=208  Identities=19%  Similarity=0.280  Sum_probs=179.7

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH--
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD--  138 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~--  138 (366)
                      .++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++ +|| ++|.|+.||+|+||+++.......  
T Consensus        24 ~~~~i~~~~~~~va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~v-~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~~  100 (280)
T 2f6q_A           24 GFETLVVTSEDGITKIMFNRPK-KKNAINTEMYHEIMRALKAASKDDSI-ITV-LTGNGDYYSSGNDLTNFTDIPPGGVE  100 (280)
T ss_dssp             ECSSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHSSCS-EEE-EEESTTCSBCCBCC----CCCTTHHH
T ss_pred             CCCeEEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHhhCCCE-EEE-EeCCCCCcccCCCHHHHhhcCcchhh
Confidence            4567889999999999999998 79999999999999999999999999 655 588899999999999986532211  


Q ss_pred             H-HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         139 Q-VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       139 ~-~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      . ...+...+++++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f~~  156 (280)
T 2f6q_A          101 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA------------------------TFHT  156 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTC------------------------EEEC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCc------------------------EEEC
Confidence            1 12233456788899999999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|
T Consensus       157 pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l  223 (280)
T 2f6q_A          157 PFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPD-------------STFQKEVWTRLKAF  223 (280)
T ss_dssp             CTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-------------TTHHHHHHHHHHHH
T ss_pred             chHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceEECH-------------HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987             56888999999999


Q ss_pred             hcCccc-ccccC
Q psy9060         298 ASGKLK-INRIK  308 (366)
Q Consensus       298 a~~~~~-~~~~~  308 (366)
                      +..+.. +...|
T Consensus       224 a~~~~~a~~~~K  235 (280)
T 2f6q_A          224 AKLPPNALRISK  235 (280)
T ss_dssp             TTSCHHHHHHHH
T ss_pred             HhCCHHHHHHHH
Confidence            887643 33344

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=5.1e-44  Score=341.31  Aligned_cols=204  Identities=20%  Similarity=0.382  Sum_probs=186.0

Q ss_pred             eeEEEe--CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          65 FKEKAV--GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        65 i~~~~~--~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.++++  ++|++|+||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.|+.||+|+||+++...........
T Consensus        26 v~~~~~~~~~va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~G~~F~aG~Dl~~~~~~~~~~~~~~  103 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQ-AFNALSEAMLAALGEAFGTLAEDESVRAVV-LAASGKAFCAGHDLKEMRAEPSREYYEK  103 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EEECSSCSBCCBCHHHHHSSCCHHHHHH
T ss_pred             EEEEEecCCCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EECCCCCccCCcChhhhhccccHHHHHH
Confidence            889999  999999999998 789999999999999999999999999755 5888899999999999976444555566


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      +...++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++
T Consensus       104 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~l  159 (286)
T 3myb_A          104 LFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDA------------------------RFAVSGINV  159 (286)
T ss_dssp             HHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTC------------------------EEECGGGGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCC------------------------EEECccccc
Confidence            77778899999999999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++ ++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..+.
T Consensus       160 Gl~-~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~p  225 (286)
T 3myb_A          160 GLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-------------KALDDEIEAMVSKIVAKPR  225 (286)
T ss_dssp             TCC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHHHHHHHSCH
T ss_pred             CCC-CchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCH-------------HHHHHHHHHHHHHHHhCCH
Confidence            999 78899999999999999999999999999999999999999987             6789999999999988754


Q ss_pred             -cccccC
Q psy9060         303 -KINRIK  308 (366)
Q Consensus       303 -~~~~~~  308 (366)
                       .+...|
T Consensus       226 ~a~~~~K  232 (286)
T 3myb_A          226 AAVAMGK  232 (286)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence             344444

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=2.3e-44  Score=340.31  Aligned_cols=205  Identities=25%  Similarity=0.365  Sum_probs=180.8

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhh---hcCCHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA---ACKTAD  138 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~---~~~~~~  138 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++.   ......
T Consensus         4 ~~~v~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T 3fdu_A            4 HPHLNANLEGGVLTLAINRPE-AKNALYGELYLWIAKALDEADQNKDVRVVV-LRGAEHDFTAGNDMKDFMGFVQNPNAG   81 (266)
T ss_dssp             CTTEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSCSBCCBCHHHHHHHHHSCCCS
T ss_pred             CCeEEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EECCCCCeECCcCHHHHhhhccccchh
Confidence            457899999999999999998 799999999999999999999999999755 588899999999999986   322211


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      .  ......+.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        82 ~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  135 (266)
T 3fdu_A           82 P--AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTA------------------------LFQIP  135 (266)
T ss_dssp             C--GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTC------------------------EEECC
T ss_pred             h--HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCC------------------------EEECc
Confidence            0  122345678899999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|.               +.+.+.++|++|+
T Consensus       136 e~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~---------------l~~~a~~~a~~la  200 (266)
T 3fdu_A          136 FVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVED---------------AYATAQATAQHLT  200 (266)
T ss_dssp             TTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEECSC---------------HHHHHHHHHHHHH
T ss_pred             hhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCHHHHHHH---------------HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999973               7788999999999


Q ss_pred             cCcc-cccccCC
Q psy9060         299 SGKL-KINRIKP  309 (366)
Q Consensus       299 ~~~~-~~~~~~~  309 (366)
                      ..+. .+..+|.
T Consensus       201 ~~~~~a~~~~K~  212 (266)
T 3fdu_A          201 ALPLASLKQTKA  212 (266)
T ss_dssp             TSCHHHHHHHHH
T ss_pred             hCCHHHHHHHHH
Confidence            8764 3444443

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=3.8e-44  Score=338.43  Aligned_cols=206  Identities=22%  Similarity=0.336  Sum_probs=181.2

Q ss_pred             CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-C-CHH
Q psy9060          62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-K-TAD  138 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~-~~~  138 (366)
                      ++.+.+++ +++|++|+||||+  .|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++ +... . ..+
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~--~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~-~~~~~~~~~~   84 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEK--LNAMPPALHRGLARVWRDLEAVEGVRAVL-LRGEGGVFSAGGSFG-LIEEMRASHE   84 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSG--GGCBCHHHHHHHHHHHHHHTTCTTCSEEE-EEEGGGCCBCCBCHH-HHHHHHHCHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCC--cCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCCCcccCccc-cccccccchH
Confidence            34688888 8999999999997  79999999999999999999999999755 578889999999999 7542 1 212


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  140 (264)
T 1wz8_A           85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGT------------------------RLLDG  140 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCC------------------------EEeCc
Confidence            222344567788999999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       141 e~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  207 (264)
T 1wz8_A          141 HLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVED-------------EKVYEKALEVAERLA  207 (264)
T ss_dssp             HHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHH
T ss_pred             hhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeecCh-------------hHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             678899999999999


Q ss_pred             cCcc-cccccC
Q psy9060         299 SGKL-KINRIK  308 (366)
Q Consensus       299 ~~~~-~~~~~~  308 (366)
                      ..+. .+...|
T Consensus       208 ~~~~~a~~~~K  218 (264)
T 1wz8_A          208 QGPKEALHHTK  218 (264)
T ss_dssp             TSCHHHHHHHH
T ss_pred             hCCHHHHHHHH
Confidence            8754 333344

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=5.4e-44  Score=339.47  Aligned_cols=206  Identities=24%  Similarity=0.397  Sum_probs=184.2

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-CHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-TADQVK  141 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-~~~~~~  141 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++++.... +.....
T Consensus        28 ~~v~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~  105 (276)
T 3rrv_A           28 TEIDVRADGALRIITLNRPD-SLNSVNDDLHVGLARLWQRLTDDPTARAAV-ITGAGRAFSAGGDFGYLKELSADADLRA  105 (276)
T ss_dssp             TTEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSBCCBCHHHHHHHHHCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCcccCCcCHHHHhhcccchHHHH
Confidence            57899999999999999998 799999999999999999999999999755 588899999999999986531 223344


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      .+...++.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||++
T Consensus       106 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f~~pe~~  161 (276)
T 3rrv_A          106 KTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENA------------------------YLADPHVQ  161 (276)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTC------------------------EEECCHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCC------------------------EEECchhc
Confidence            555667889999999999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+ .              ++.+.+.++|++|+..+
T Consensus       162 ~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv-~--------------~l~~~a~~~A~~la~~~  226 (276)
T 3rrv_A          162 VGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA-D--------------DPVAEAIACAKKILELP  226 (276)
T ss_dssp             HTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE-S--------------SHHHHHHHHHHHHHHSC
T ss_pred             cCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH-H--------------HHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999 4              37888999999999876


Q ss_pred             cc-ccccCC
Q psy9060         302 LK-INRIKP  309 (366)
Q Consensus       302 ~~-~~~~~~  309 (366)
                      .. +..+|.
T Consensus       227 ~~a~~~~K~  235 (276)
T 3rrv_A          227 QQAVESTKR  235 (276)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            43 444453

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.6e-43  Score=334.37  Aligned_cols=206  Identities=32%  Similarity=0.502  Sum_probs=182.5

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEee-CCCcEEcCCCcchhhhcCCHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-KPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g-~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      ++.+.++++++|++|+||||  +.|++|.+|+++|.++++.++.|+++++|| ++| .|+.||+|+||+++.. .. ...
T Consensus         8 ~~~i~~~~~~~v~~itlnrp--~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~~g~~F~aG~Dl~~~~~-~~-~~~   82 (265)
T 2ppy_A            8 KQYLTVFKEDGIAEIHLHIN--KSNSYDLEFYKEFNAAIDDIRFDPDIKVVI-VMSDVPKFFSAGADINFLRS-AD-PRF   82 (265)
T ss_dssp             CSSEEEEEETTEEEEEECSS--TTCCBCHHHHHHHHHHHHHHHTCTTCCEEE-EEECSTTEEECCBCHHHHTT-SC-HHH
T ss_pred             CCeEEEEeeCCEEEEEECCC--CCCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EEcCCCCeeeeCcCHHHHhc-cc-hhH
Confidence            56788999999999999999  479999999999999999999999999765 477 8899999999999865 22 223


Q ss_pred             HHHHHHH-HHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         141 KQISKSG-QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       141 ~~~~~~~-~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ..+...+ ++++..+.++||||||+|||+|+|||++|+++||+|||++++ .                      +|++||
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a-g----------------------~f~~pe  139 (265)
T 2ppy_A           83 KTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEA-G----------------------KIGLPE  139 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTC-C----------------------CEECCG
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCC-C----------------------EEECcc
Confidence            3344556 788899999999999999999999999999999999999886 2                      699999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+.
T Consensus       140 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~  206 (265)
T 2ppy_A          140 VSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQ-------------AETRERTREYARKLAN  206 (265)
T ss_dssp             GGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHHT
T ss_pred             cccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCH-------------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             6788999999999998


Q ss_pred             Ccc-cccccC
Q psy9060         300 GKL-KINRIK  308 (366)
Q Consensus       300 ~~~-~~~~~~  308 (366)
                      .+. .+...|
T Consensus       207 ~~~~a~~~~K  216 (265)
T 2ppy_A          207 SATYAVSNIK  216 (265)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            754 344444

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=8e-45  Score=348.71  Aligned_cols=209  Identities=27%  Similarity=0.409  Sum_probs=172.2

Q ss_pred             CCcceeEEEeC-CEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhh---cCC
Q psy9060          61 STKHFKEKAVG-DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA---CKT  136 (366)
Q Consensus        61 ~~~~i~~~~~~-~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~---~~~  136 (366)
                      .++.+.+++++ +|++|+||||+ +.|+||.+|+.+|.++++.++.|++||+|| ++|.|+.||+|+||+++..   ...
T Consensus        27 ~~~~v~~~~~~~~Va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~G~~FcaG~Dl~~~~~~~~~~~  104 (298)
T 3qre_A           27 AQDAVLYEATPGGVAIITFNRAD-RLNAWGPDLAAGFYAAIDRAEADPGIRVIV-LTGRGRGFCAGAYLGSADAAAGYDK  104 (298)
T ss_dssp             -CCSEEEEECTTSEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSEECC-------------
T ss_pred             CCCeEEEEEeCCCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCcccCcCHHHHhhcccccc
Confidence            35679999999 99999999998 789999999999999999999999999755 5888999999999999864   111


Q ss_pred             HH----HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccc
Q psy9060         137 AD----QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKK  212 (366)
Q Consensus       137 ~~----~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~  212 (366)
                      ..    ....+....+.++..+.++||||||+|||+|+|||++|+++||+|||++++                       
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a-----------------------  161 (298)
T 3qre_A          105 TMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGA-----------------------  161 (298)
T ss_dssp             ----------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTC-----------------------
T ss_pred             ccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCC-----------------------
Confidence            10    112222334567788999999999999999999999999999999999987                       


Q ss_pred             ccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHH
Q psy9060         213 TGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN  292 (366)
Q Consensus       213 ~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~  292 (366)
                       +|++||+++|++|++|++++|+|++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+
T Consensus       162 -~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~  227 (298)
T 3qre_A          162 -KFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-------------EQLMPRALE  227 (298)
T ss_dssp             -EEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-------------GGHHHHHHH
T ss_pred             -EEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCH-------------HHHHHHHHH
Confidence             999999999999999999999999999999999999999999999999999999987             678899999


Q ss_pred             HHHHHhcC-c-ccccccC
Q psy9060         293 TASQLASG-K-LKINRIK  308 (366)
Q Consensus       293 ~a~~la~~-~-~~~~~~~  308 (366)
                      +|++|+.. + ..+..+|
T Consensus       228 ~A~~la~~~~p~a~~~~K  245 (298)
T 3qre_A          228 YAEDIARYCSPSSMAVIK  245 (298)
T ss_dssp             HHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHccCCHHHHHHHH
Confidence            99999876 4 3344444

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=1.9e-43  Score=333.02  Aligned_cols=208  Identities=23%  Similarity=0.316  Sum_probs=181.8

Q ss_pred             CCcceeEEEeCCEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--C-
Q psy9060          61 STKHFKEKAVGDVLVVTLD-SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--T-  136 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itln-rp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~-  136 (366)
                      .++.+.++++++|++|+|| ||+ +.|++|.+|+.+|.++++.++.|+ +++ ||++|.|+.||+|+||+++....  . 
T Consensus         3 ~~~~i~~~~~~~v~~itln~rp~-~~Nal~~~~~~~L~~al~~~~~d~-~r~-vvltg~g~~F~aG~Dl~~~~~~~~~~~   79 (261)
T 2gtr_A            3 RYRDIVVRKQDGFTHILLSTKSS-ENNSLNPEVMREVQSALSTAAADD-SKL-VLLSAVGSVFCCGLDFIYFIRRLTDDR   79 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCSSS-STTEECHHHHHHHHHHHHHHHHSS-CSC-EEEEESSSCSBCEECHHHHHHHHHHCH
T ss_pred             ccceEEEEEeCCEEEEEECCCCc-cCCCCCHHHHHHHHHHHHHHhcCC-CEE-EEEecCCCccccccCchhhhhccccch
Confidence            3567889999999999999 698 789999999999999999999987 486 55688899999999999875421  1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccc
Q psy9060         137 ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLG  216 (366)
Q Consensus       137 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (366)
                      ......+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|+
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~  135 (261)
T 2gtr_A           80 KRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKA------------------------WFQ  135 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTC------------------------EEE
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCC------------------------EEe
Confidence            11223344556788899999999999999999999999999999999999987                        999


Q ss_pred             ccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         217 LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       217 ~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      +||+++|++|++|++++|++++|..+|++|++||+.++|+||+++||||+|+|+             +++.+.+.+++++
T Consensus       136 ~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~  202 (261)
T 2gtr_A          136 TPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWP-------------GTFTQEVMVRIKE  202 (261)
T ss_dssp             CCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECG-------------GGHHHHHHHHHHH
T ss_pred             CchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCcccccCh-------------hHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987             6788999999999


Q ss_pred             HhcCccc-ccccC
Q psy9060         297 LASGKLK-INRIK  308 (366)
Q Consensus       297 la~~~~~-~~~~~  308 (366)
                      |+..++. +..+|
T Consensus       203 la~~~p~a~~~~K  215 (261)
T 2gtr_A          203 LASCNPVVLEESK  215 (261)
T ss_dssp             HHTSCHHHHHHHH
T ss_pred             HHhCCHHHHHHHH
Confidence            9987643 44444

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=4.7e-45  Score=344.32  Aligned_cols=206  Identities=26%  Similarity=0.423  Sum_probs=178.1

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++|+|| ++|.|+.||+|+||+++....... .
T Consensus         9 ~m~~v~~~~~~~va~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~-~   85 (262)
T 3r9q_A            9 MQPAVRVEKAGPVTTVILNRPH-ARNAVDGPTAAALLAAFTEFDADPEASVAV-LWGDNGTFCAGADLKAMGTDRGNE-L   85 (262)
T ss_dssp             -CCSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSBCCBCTTTTTSTTSCC-C
T ss_pred             cCCEEEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCccCCcCHHHHhccChhh-H
Confidence            3456899999999999999998 789999999999999999999999999755 588899999999999986532210 0


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      .  ......++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+
T Consensus        86 ~--~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~  139 (262)
T 3r9q_A           86 H--PHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDA------------------------VLGVFCR  139 (262)
T ss_dssp             C--TTSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECTHH
T ss_pred             H--HhhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCC------------------------EEecchh
Confidence            0  0011233445679999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.++|++|+..
T Consensus       140 ~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  206 (262)
T 3r9q_A          140 RWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVAR-------------GQAREAAETLAAEIAAF  206 (262)
T ss_dssp             HHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-------------TCHHHHHHHHHHHHHHS
T ss_pred             ccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEecCh-------------hHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999997             56889999999999988


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +..+|
T Consensus       207 ~~~a~~~~K  215 (262)
T 3r9q_A          207 PQQCVRADR  215 (262)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            643 44444

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=2.3e-44  Score=341.39  Aligned_cols=209  Identities=23%  Similarity=0.374  Sum_probs=185.8

Q ss_pred             CCcceeEEEeC-CEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC-CHH
Q psy9060          61 STKHFKEKAVG-DVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK-TAD  138 (366)
Q Consensus        61 ~~~~i~~~~~~-~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~-~~~  138 (366)
                      .++.+.+++++ +|++|+||||+  .|++|.+|+.+|.++++.++.|+++|+|| ++|.|+.||+|+|++++.... +..
T Consensus        11 ~~~~v~~~~~~~~v~~itlnrp~--~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~   87 (272)
T 3qk8_A           11 DFPSLRFEPGEHGVLNLVLDSPG--LNSVGPQMHRDLADVWPVIDRDPDVRVVL-VRGEGKAFSSGGSFELIDETIGDYE   87 (272)
T ss_dssp             GCTTEEEEECSTTEEEEEECCHH--HHEECHHHHHHHHHHHHHHHHCTTCSEEE-EEESSSCSBCEECHHHHHHHHHCHH
T ss_pred             CCCeEEEEEeCCCEEEEEECCCC--cCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCCeeCCcCHHHHhccccchH
Confidence            35678999876 89999999997  79999999999999999999999999755 588899999999999986531 222


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  143 (272)
T 3qk8_A           88 GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATA------------------------KIIDG  143 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTC------------------------EEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC------------------------EEECc
Confidence            333455667889999999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.++|++|+
T Consensus       144 e~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  210 (272)
T 3qk8_A          144 HTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDD-------------DEVLPTATRLAENLA  210 (272)
T ss_dssp             HHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHH
T ss_pred             hhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEeeCH-------------hHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             678999999999999


Q ss_pred             cCccc-ccccCC
Q psy9060         299 SGKLK-INRIKP  309 (366)
Q Consensus       299 ~~~~~-~~~~~~  309 (366)
                      ..+.. +..+|.
T Consensus       211 ~~~~~a~~~~K~  222 (272)
T 3qk8_A          211 QGAQNAIRWTKR  222 (272)
T ss_dssp             TSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHH
Confidence            88643 444453

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.4e-43  Score=328.53  Aligned_cols=202  Identities=23%  Similarity=0.375  Sum_probs=181.0

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++||||||+  .|++|.+|+++|.++++.++.|+  ++ ||++|.|+.||+|+|++++..  .......
T Consensus         6 ~~v~~~~~~~v~~itlnrp~--~Nal~~~~~~~L~~al~~~~~d~--~~-vvltg~g~~F~aG~Dl~~~~~--~~~~~~~   78 (232)
T 3ot6_A            6 DLVSYHLDDGVATLTLNNGK--VNAISPDVIIAFNAALDQAEKDR--AI-VIVTGQPGILSGGYDLKVMTS--SAEAAIN   78 (232)
T ss_dssp             HHEEEEEETTEEEEEECCTT--TTCBCHHHHHHHHHHHHHHHHTT--CE-EEEECBTEEEECCBCHHHHHH--CHHHHHH
T ss_pred             cceEEEEECCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHhcCC--CE-EEEECCCCCccCCcCHHHHhh--ChHHHHH
Confidence            45888999999999999985  69999999999999999999874  75 556899999999999999876  2344556


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC-CccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD-KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      +...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ +                        +|++||++
T Consensus        79 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a------------------------~f~~pe~~  134 (232)
T 3ot6_A           79 LVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPF------------------------SIGLNEVQ  134 (232)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSC------------------------CEECCTTT
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCc------------------------EEECcccc
Confidence            6677789999999999999999999999999999999999999997 5                        89999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|+++++++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.++|++|++.+
T Consensus       135 ~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~  201 (232)
T 3ot6_A          135 IGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSV-------------EELQGAALAVAAQLKKIN  201 (232)
T ss_dssp             TTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEECT-------------TTHHHHHHHHHHHHTTSC
T ss_pred             cCCCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCEecCH-------------HHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999997             678999999999999876


Q ss_pred             cc-ccccC
Q psy9060         302 LK-INRIK  308 (366)
Q Consensus       302 ~~-~~~~~  308 (366)
                      .. +...|
T Consensus       202 ~~a~~~~K  209 (232)
T 3ot6_A          202 MNAHKKTK  209 (232)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            43 44444

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=5.4e-44  Score=341.52  Aligned_cols=211  Identities=18%  Similarity=0.318  Sum_probs=178.7

Q ss_pred             ccCCcceeEEEe-CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCC
Q psy9060          59 KNSTKHFKEKAV-GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKT  136 (366)
Q Consensus        59 k~~~~~i~~~~~-~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~  136 (366)
                      ...++.+.++++ ++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.| ++||+|+||+++.....
T Consensus        23 ~~~~~~v~~~~~~~~va~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~G~~~FcaG~Dl~~~~~~~~  100 (289)
T 3t89_A           23 SEGFEDIRYEKSTDGIAKITINRPQ-VRNAFRPLTVKEMIQALADARYDDNIGVII-LTGAGDKAFCSGGDQKVRGDYGG  100 (289)
T ss_dssp             CTTCSSEEEEEETTSEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSSEEECCBCCC-------
T ss_pred             CCCCCeEEEEEecCCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EEcCCCCCccCCCChhhhhcccc
Confidence            345678999999 999999999998 789999999999999999999999999755 57887 59999999998854221


Q ss_pred             H-HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         137 A-DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       137 ~-~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                      . +.........+.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a------------------------~f  156 (289)
T 3t89_A          101 YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNA------------------------IF  156 (289)
T ss_dssp             ---------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EE
T ss_pred             chhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCC------------------------EE
Confidence            1 1111122245678899999999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|++|+++++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.++|+
T Consensus       157 ~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~~A~  223 (289)
T 3t89_A          157 GQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-------------ADLEKETVRWCR  223 (289)
T ss_dssp             ECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHHHHH
T ss_pred             eccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEeeCH-------------HHHHHHHHHHHH
Confidence            9999999998888889999999999999999999999999999999999999987             678999999999


Q ss_pred             HHhcCccc-ccccC
Q psy9060         296 QLASGKLK-INRIK  308 (366)
Q Consensus       296 ~la~~~~~-~~~~~  308 (366)
                      +|+..+.. +..+|
T Consensus       224 ~la~~~~~a~~~~K  237 (289)
T 3t89_A          224 EMLQNSPMALRCLK  237 (289)
T ss_dssp             HHHTSCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHH
Confidence            99988643 44444

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=1.1e-43  Score=337.15  Aligned_cols=209  Identities=29%  Similarity=0.458  Sum_probs=181.9

Q ss_pred             CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-C----
Q psy9060          62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-K----  135 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~----  135 (366)
                      ++++.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++... .    
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~~   79 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPE-KRNAMNRAFWRELVECFQKISKDSDCRAVV-VSGAGKMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EEESTTCSBCCBCHHHHHHHHTSCCC
T ss_pred             CceEEEEEcCCCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCccCCcChHHHhhccccccc
Confidence            45688887 5789999999998 799999999999999999999999999755 57889999999999988542 0    


Q ss_pred             -CH----HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccc
Q psy9060         136 -TA----DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKD  210 (366)
Q Consensus       136 -~~----~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~  210 (366)
                       +.    .....+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a---------------------  138 (275)
T 1dci_A           80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA---------------------  138 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTC---------------------
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCC---------------------
Confidence             11    1122333456778889999999999999999999999999999999999987                     


Q ss_pred             ccccccccchhccCCCChhHHhHHhhhcCH-HHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHH
Q psy9060         211 KKTGLGLPEVMLGLLPGAGGTQRLPKLTAL-PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV  289 (366)
Q Consensus       211 ~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~-~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~  289 (366)
                         +|++||+++|++|++|++++|++++|. .+|++|++||+.++|+||+++||||+|+|+            .+++.+.
T Consensus       139 ---~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~------------~~~l~~~  203 (275)
T 1dci_A          139 ---FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPD------------KDVMLNA  203 (275)
T ss_dssp             ---EEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESS------------HHHHHHH
T ss_pred             ---EEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCC------------hHHHHHH
Confidence               999999999999999999999999999 999999999999999999999999999985            1578899


Q ss_pred             HHHHHHHHhcCcc-cccccC
Q psy9060         290 AVNTASQLASGKL-KINRIK  308 (366)
Q Consensus       290 a~~~a~~la~~~~-~~~~~~  308 (366)
                      +.+++++|+..++ .+..+|
T Consensus       204 a~~~a~~la~~~p~a~~~~K  223 (275)
T 1dci_A          204 AFALAADISSKSPVAVQGSK  223 (275)
T ss_dssp             HHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHH
Confidence            9999999998754 344444

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.1e-45  Score=344.79  Aligned_cols=208  Identities=24%  Similarity=0.395  Sum_probs=181.3

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++|+|| ++|.|+.||+|+|++++....... .
T Consensus        10 ~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~l~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~-~   86 (258)
T 3lao_A           10 GPGRVTREQRGHLFLIGLDRAG-KRNAFDSAMLADLALAMGEYERSEESRCAV-LFAHGEHFTAGLDLMELAPKLAAS-G   86 (258)
T ss_dssp             SSCCEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSCSBCCBCHHHHGGGCBTT-B
T ss_pred             CCCeEEEEEECCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCCCcEEEE-EECCCCCeecCcCHHHHhhccchh-h
Confidence            4677999999999999999998 789999999999999999999999999755 588888999999999986532211 0


Q ss_pred             HHHHHHHHHHHHHH-HcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         141 KQISKSGQQILSEI-ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       141 ~~~~~~~~~~~~~i-~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ..+...+++++.++ .++||||||+|||+|+|||++|+++||+|||++++                        +|++||
T Consensus        87 ~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe  142 (258)
T 3lao_A           87 FRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGT------------------------RFAHLE  142 (258)
T ss_dssp             CCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTC------------------------EEECGG
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCC------------------------EEeCcc
Confidence            11112334566778 89999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.+++++|+.
T Consensus       143 ~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~  209 (258)
T 3lao_A          143 VLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEP-------------GEELARALEYAERIAR  209 (258)
T ss_dssp             GGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-------------TCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEeeCh-------------hHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             5688899999999998


Q ss_pred             Ccc-cccccC
Q psy9060         300 GKL-KINRIK  308 (366)
Q Consensus       300 ~~~-~~~~~~  308 (366)
                      .++ .+..+|
T Consensus       210 ~~~~a~~~~K  219 (258)
T 3lao_A          210 AAPLAVRAAL  219 (258)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            754 344444

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=9.4e-44  Score=338.47  Aligned_cols=215  Identities=15%  Similarity=0.226  Sum_probs=180.3

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-H--
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-A--  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-~--  137 (366)
                      .++.+.++++++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++..... .  
T Consensus         7 ~~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (280)
T 1pjh_A            7 QNEKISYRIEGPFFIIHLINPD-NLNALEGEDYIYLGELLELADRNRDVYFTI-IQSSGRFFSSGADFKGIAKAQGDDTN   84 (280)
T ss_dssp             CBTTEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EECBTTBSBCCBCHHHHHC-------
T ss_pred             cCCceEEEEECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCCccCCcCHHHHhhccccccc
Confidence            3567889999999999999998 799999999999999999999999999755 5888999999999998754211 0  


Q ss_pred             ---HHHH----HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEe-cCCccCCCchhhhhhhhhhhhcc
Q psy9060         138 ---DQVK----QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV-KDKKTGLGLPEVALACHYRIVVK  209 (366)
Q Consensus       138 ---~~~~----~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~-~~ak~~~~~~~~~~~~~~~~~~~  209 (366)
                         ....    .+....++++..+.++||||||+|||+|+|||++|+++||+|||+ +++                    
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a--------------------  144 (280)
T 1pjh_A           85 KYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKV--------------------  144 (280)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTC--------------------
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCC--------------------
Confidence               1111    122233578889999999999999999999999999999999999 877                    


Q ss_pred             cccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHH
Q psy9060         210 DKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV  289 (366)
Q Consensus       210 ~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~  289 (366)
                          +|++||+++|++|++|++++|++++|..+|++|++||+.++|+||+++||||+|+|+.     +   ...+++.+.
T Consensus       145 ----~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~-----~---~~~~~l~~~  212 (280)
T 1pjh_A          145 ----YLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMP-----S---SNAEAFNAK  212 (280)
T ss_dssp             ----EEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCC-----T---TCHHHHHHH
T ss_pred             ----EEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCc-----c---ccHHHHHHH
Confidence                9999999999999999999999999999999999999999999999999999999861     0   001267777


Q ss_pred             HH-HHHHHHhcCcc-cccccCC
Q psy9060         290 AV-NTASQLASGKL-KINRIKP  309 (366)
Q Consensus       290 a~-~~a~~la~~~~-~~~~~~~  309 (366)
                      +. +++++|+..+. .+..+|.
T Consensus       213 a~~~~a~~la~~~~~a~~~~K~  234 (280)
T 1pjh_A          213 VLEELREKVKGLYLPSCLGMKK  234 (280)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Confidence            74 89999998764 3444443

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.4e-43  Score=333.36  Aligned_cols=206  Identities=22%  Similarity=0.307  Sum_probs=182.9

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++.. .+.....
T Consensus        15 ~~~i~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~-~~~~~~~   91 (257)
T 1szo_A           15 YENIRLERDGGVLLVTVHTEG-KSLVWTSTAHDELAYCFHDIACDRENKVVI-LTGTGPSFCNEIDFTSFNL-GTPHDWD   91 (257)
T ss_dssp             CTTEEEEEETTEEEEEECBTT-BSCEECHHHHHHHHHHHHHHHHCTTCCEEE-EECBTTBSBCEECGGGSCC-SSHHHHH
T ss_pred             CceEEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EEcCCCccccCcCchhhhc-CCHHHHH
Confidence            356889999999999999998 789999999999999999999999999755 5788899999999998853 2233333


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc-cch
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL-PEV  220 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-pe~  220 (366)
                      .+...+++++.++.++||||||+|||+|+ ||++|+++||+||+++++                        +|++ ||+
T Consensus        92 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a------------------------~f~~~pe~  146 (257)
T 1szo_A           92 EIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESA------------------------TFQDGPHF  146 (257)
T ss_dssp             HHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTC------------------------EEECTTSG
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCC------------------------EEecCccc
Confidence            34445678889999999999999999999 589999999999999987                        8999 999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       147 ~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  213 (257)
T 1szo_A          147 PSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE-------------QELLPRAWELARGIAEK  213 (257)
T ss_dssp             GGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-------------HHHHHHHHHHHHHHHTS
T ss_pred             ccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             78999999999999987


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      +.. +...|
T Consensus       214 ~~~a~~~~K  222 (257)
T 1szo_A          214 PLLARRYAR  222 (257)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            643 44444

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=3.6e-44  Score=338.06  Aligned_cols=205  Identities=23%  Similarity=0.370  Sum_probs=178.7

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEee-CC-CcEEcCCCcchhhhcCCHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-KP-GCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g-~g-~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+ +++|| ++| .| +.||+|+|++++...... .
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~-vr~vV-ltg~~g~~~F~aG~Dl~~~~~~~~~-~   78 (261)
T 1ef8_A            3 YQYVNVVTINKVAVIEFNYGR-KLNALSKVFIDDLMQALSDLNRPE-IRCII-LRAPSGSKVFSAGHDIHELPSGGRD-P   78 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHHTCSTT-CCEEE-EECCTTCSEEECCSCSTTC-----C-T
T ss_pred             cceEEEEEeCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhhCC-ceEEE-EECCCCCCeeecCcChHhhhccCch-h
Confidence            567889999999999999998 789999999999999999999999 99755 578 77 899999999987542111 1


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      . .....+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||
T Consensus        79 ~-~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe  133 (261)
T 1ef8_A           79 L-SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTS------------------------TFSMTP  133 (261)
T ss_dssp             T-CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCH
T ss_pred             H-HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCC------------------------EEeCch
Confidence            0 111235678889999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+.
T Consensus       134 ~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~  200 (261)
T 1ef8_A          134 VNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEV-------------EELEDFTLQMAHHISE  200 (261)
T ss_dssp             HHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-------------HHHHHHHHHHHHHHTT
T ss_pred             hccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCcccccCH-------------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             7899999999999998


Q ss_pred             Ccc-cccccC
Q psy9060         300 GKL-KINRIK  308 (366)
Q Consensus       300 ~~~-~~~~~~  308 (366)
                      .+. .+...|
T Consensus       201 ~~~~a~~~~K  210 (261)
T 1ef8_A          201 KAPLAIAVIK  210 (261)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            764 333344

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=2.4e-44  Score=338.38  Aligned_cols=198  Identities=27%  Similarity=0.406  Sum_probs=175.4

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+||+++...       
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vv-ltg~g~~F~aG~Dl~~~~~~-------   78 (256)
T 3pe8_A            8 SPVLLVDTTDRVRTLTLNRPQ-SRNALSAELRSTFFRALSDAQNDDDVDVVI-VTGADPVFCAGLDLKELGDT-------   78 (256)
T ss_dssp             CCSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCSEEE-EEESTTCSBCCBCTTTC----------
T ss_pred             CCcEEEEEECCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EECCCCCccCCcCHHHHhhh-------
Confidence            457889999999999999998 789999999999999999999999999755 58889999999999987642       


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                         ..+..+...+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||++
T Consensus        79 ---~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~  131 (256)
T 3pe8_A           79 ---TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENA------------------------KFADTHAR  131 (256)
T ss_dssp             ---------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCHHH
T ss_pred             ---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCC------------------------EEECchhh
Confidence               112334467889999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                      +|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..+
T Consensus       132 ~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~  198 (256)
T 3pe8_A          132 VGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAH-------------DDLLTAARRVAASIVGNN  198 (256)
T ss_dssp             HTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCEECG-------------GGHHHHHHHHHHHHHTSC
T ss_pred             hCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEEeCH-------------hHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999997             678999999999999876


Q ss_pred             cc-ccccC
Q psy9060         302 LK-INRIK  308 (366)
Q Consensus       302 ~~-~~~~~  308 (366)
                      .. +...|
T Consensus       199 ~~a~~~~K  206 (256)
T 3pe8_A          199 QKAVRALL  206 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            43 44444

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=5.3e-45  Score=344.51  Aligned_cols=206  Identities=24%  Similarity=0.397  Sum_probs=181.2

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++........ .
T Consensus         6 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~-~   82 (265)
T 3qxz_A            6 VTELHEEIRDGVAVLTLHGPS-TRNSFTVELGRQLGAAYQRLDDDPAVRVIV-LTGAPPAFCSGAQISAAAETFAAPR-N   82 (265)
T ss_dssp             CCEEEEEEETTEEEEEEECGG-GTSCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTEEECCBCSTTCTTCCCCCC-S
T ss_pred             cceEEEEEECCEEEEEEcCCc-cCCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCccccCcChHHHhhccchhH-H
Confidence            567889999999999999998 789999999999999999999999999755 5888999999999999865322110 0


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchh
Q psy9060         142 QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVM  221 (366)
Q Consensus       142 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  221 (366)
                      ..... +.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||++
T Consensus        83 ~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~  137 (265)
T 3qxz_A           83 PDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEG------------------------RYAIPQVR  137 (265)
T ss_dssp             SCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTC------------------------CEECCGGG
T ss_pred             HHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCC------------------------EEECcccc
Confidence            01112 466778999999999999999999999999999999999987                        99999999


Q ss_pred             ccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-
Q psy9060         222 LGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG-  300 (366)
Q Consensus       222 ~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~-  300 (366)
                      +|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+.. 
T Consensus       138 ~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~  204 (265)
T 3qxz_A          138 FGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPA-------------GKVLGAALRMAHDIATNV  204 (265)
T ss_dssp             GTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEECH-------------HHHHHHHHHHHHHHHHHS
T ss_pred             cCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeCH-------------HHHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999987             78999999999999876 


Q ss_pred             cc-cccccC
Q psy9060         301 KL-KINRIK  308 (366)
Q Consensus       301 ~~-~~~~~~  308 (366)
                      +. .+..+|
T Consensus       205 ~p~a~~~~K  213 (265)
T 3qxz_A          205 APESAALTK  213 (265)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            54 344444

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=8.4e-44  Score=336.26  Aligned_cols=204  Identities=27%  Similarity=0.463  Sum_probs=173.8

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++ ...  . ....
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~-~~~--~-~~~~   81 (265)
T 3rsi_A            8 ARELLVERDGPVVILTMNRPH-RRNALSTNMVSQFAAAWDEIDHDDGIRAAI-LTGAGSAYCVGGDLS-DGW--M-VRDG   81 (265)
T ss_dssp             -CCEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSEECC---------------
T ss_pred             CCcEEEEEECCEEEEEEcCcc-cccCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCcccCcCCC-ccc--c-cchH
Confidence            567899999999999999998 789999999999999999999999999755 588899999999998 221  1 1111


Q ss_pred             HHHHHHHH-HHHHH-H--cCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         142 QISKSGQQ-ILSEI-E--SSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       142 ~~~~~~~~-~~~~i-~--~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      .+....+. ++..+ .  ++||||||+|||+|+|||++|+++||+|||++++                        +|++
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~  137 (265)
T 3rsi_A           82 SAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHA------------------------TFGL  137 (265)
T ss_dssp             ---CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTC------------------------EEEC
T ss_pred             HHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCC------------------------EEEC
Confidence            22233456 88888 8  9999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|
T Consensus       138 pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l  204 (265)
T 3rsi_A          138 PEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPA-------------GTALDKARSLADRI  204 (265)
T ss_dssp             GGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEEST-------------TCHHHHHHHHHHHH
T ss_pred             chhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCh-------------hHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987             56888999999999


Q ss_pred             hcCcc-cccccC
Q psy9060         298 ASGKL-KINRIK  308 (366)
Q Consensus       298 a~~~~-~~~~~~  308 (366)
                      +..+. .+..+|
T Consensus       205 a~~~~~a~~~~K  216 (265)
T 3rsi_A          205 VRNGPLAVRNAK  216 (265)
T ss_dssp             HTSCHHHHHHHH
T ss_pred             HhCCHHHHHHHH
Confidence            98864 344444

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.2e-43  Score=339.47  Aligned_cols=209  Identities=21%  Similarity=0.301  Sum_probs=181.9

Q ss_pred             cCCcceeEEEeCCEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--C
Q psy9060          60 NSTKHFKEKAVGDVLVVTLD-SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--T  136 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itln-rp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~  136 (366)
                      ..++.+.++++++|++|+|| ||+ +.|+||.+|+.+|.++++.++.|+. ++ ||++|.|+.||+|+||+++....  .
T Consensus        20 ~~~~~v~~~~~~~v~~itln~rp~-~~Nal~~~m~~~L~~al~~~~~d~~-r~-vVltg~G~~FcaG~Dl~~~~~~~~~~   96 (291)
T 2fbm_A           20 STYRDIVVKKEDGFTQIVLSTRST-EKNALNTEVIKEIVNALNSAAADDS-KL-VLFSAAGSVFCCGLDFGYFVKHLRNN   96 (291)
T ss_dssp             -CCSSEEEEECSSEEEEEECCSSS-STTCBCHHHHHHHHHHHHHHHHSSC-SE-EEEEECSSCSBCCBCHHHHHHHHHHC
T ss_pred             CCcceEEEEEeCCEEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHhcCCC-eE-EEEECCCCCccCCcCHHHHHhccccc
Confidence            45678899999999999999 698 7899999999999999999999874 85 55688899999999999885421  1


Q ss_pred             -HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         137 -ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       137 -~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                       ......+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a------------------------~f  152 (291)
T 2fbm_A           97 RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKA------------------------WF  152 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTC------------------------EE
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCC------------------------EE
Confidence             11223344556788899999999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|++|++|++++|++++|..+|++|++||+.++|+||+++||||+|+|+             +++.+.+.++++
T Consensus       153 ~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~~a~  219 (291)
T 2fbm_A          153 QTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT-------------GTFTQEVMIQIK  219 (291)
T ss_dssp             ECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECS-------------TTSHHHHHHHHH
T ss_pred             ECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCcceecCh-------------hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987             567888999999


Q ss_pred             HHhcCccc-ccccC
Q psy9060         296 QLASGKLK-INRIK  308 (366)
Q Consensus       296 ~la~~~~~-~~~~~  308 (366)
                      +|+..++. +..+|
T Consensus       220 ~la~~~p~a~~~~K  233 (291)
T 2fbm_A          220 ELASYNPIVLEECK  233 (291)
T ss_dssp             HHTTSCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHH
Confidence            99987643 44444

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=8e-44  Score=334.16  Aligned_cols=203  Identities=28%  Similarity=0.450  Sum_probs=176.6

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcC--CHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACK--TADQVKQ  142 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~--~~~~~~~  142 (366)
                      +.++ +++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++....  .......
T Consensus         2 i~~~-~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   78 (253)
T 1uiy_A            2 VQVE-KGHVAVVFLNDPE-RRNPLSPEMALSLLQALDDLEADPGVRAVV-LTGRGKAFSAGADLAFLERVTELGAEENYR   78 (253)
T ss_dssp             EEEE-CSSEEEEEECCGG-GTCCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSCSBCCCCHHHHHHHTTSCHHHHHH
T ss_pred             EEEE-eCCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCcccCcChHHHHhcccCCchhHHH
Confidence            4677 8999999999998 799999999999999999999999999755 578889999999999886531  1111111


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                      ....+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a------------------------~f~~pe~~~  134 (253)
T 1uiy_A           79 HSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEA------------------------RLGYTEVKI  134 (253)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTC------------------------EEECCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCc------------------------EEeCccccc
Confidence            11126788899999999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++| +++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..+.
T Consensus       135 Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~  200 (253)
T 1uiy_A          135 GFVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPP-------------GKALEEAKALAEEVAKNAP  200 (253)
T ss_dssp             TCCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-------------TCHHHHHHHHHHHHHHSCH
T ss_pred             CcCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCh-------------hHHHHHHHHHHHHHHcCCH
Confidence            9999999 9999999999999999999999999999999999999987             5688889999999988754


Q ss_pred             -cccccC
Q psy9060         303 -KINRIK  308 (366)
Q Consensus       303 -~~~~~~  308 (366)
                       .+...|
T Consensus       201 ~a~~~~K  207 (253)
T 1uiy_A          201 TSLRLTK  207 (253)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence             343344

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=6.5e-44  Score=346.97  Aligned_cols=209  Identities=17%  Similarity=0.285  Sum_probs=179.3

Q ss_pred             CCcceeEEEe--CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCC-------cEEcCCCcchh
Q psy9060          61 STKHFKEKAV--GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-------CFIAGADISML  131 (366)
Q Consensus        61 ~~~~i~~~~~--~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~-------~F~aG~Dl~~~  131 (366)
                      .++.|.++++  ++|++|+||||+ +.|+||.+|+++|.++++.++.|++|++|| ++|.|+       .||+|+||+++
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~-~~NAl~~~~~~eL~~al~~~~~d~~vrvVV-ltG~G~~~~~~~~~FcaG~Dl~~~  130 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPE-VRNAFRPHTVDELYRVLDHARMSPDVGVVL-LTGNGPSPKDGGWAFCSGGDQRIR  130 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEECCCCTTTCCCEEECCSCTTTT
T ss_pred             CCceEEEEEeccCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EeCCCCCcCCCCCcccCCCCHHHh
Confidence            4678999986  899999999999 789999999999999999999999999755 477775       89999999987


Q ss_pred             hhcCC----H------HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEe-cCCccCCCchhhhh
Q psy9060         132 AACKT----A------DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV-KDKKTGLGLPEVAL  200 (366)
Q Consensus       132 ~~~~~----~------~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~-~~ak~~~~~~~~~~  200 (366)
                      .....    .      +........+..++..|.++||||||+|||+|+|||++|+++||+|||+ +++           
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A-----------  199 (334)
T 3t8b_A          131 GRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYA-----------  199 (334)
T ss_dssp             C----------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTC-----------
T ss_pred             hcccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCc-----------
Confidence            43211    0      0111112235678889999999999999999999999999999999999 887           


Q ss_pred             hhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcch
Q psy9060         201 ACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEE  280 (366)
Q Consensus       201 ~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~  280 (366)
                                   +|++||+++|++|++|++++|+|++|..+|++|+++|+.++|+||+++||||+|||+          
T Consensus       200 -------------~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~----------  256 (334)
T 3t8b_A          200 -------------RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH----------  256 (334)
T ss_dssp             -------------EEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECG----------
T ss_pred             -------------EEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCH----------
Confidence                         999999999999999999999999999999999999999999999999999999997          


Q ss_pred             hhHHHHHHHHHHHHHHHhcCcc-cccccC
Q psy9060         281 RTMEYLEEVAVNTASQLASGKL-KINRIK  308 (366)
Q Consensus       281 ~~~~~l~~~a~~~a~~la~~~~-~~~~~~  308 (366)
                         +++.+.|.++|++|+..+. .+..+|
T Consensus       257 ---~~l~~~a~~~A~~ia~~~p~a~~~~K  282 (334)
T 3t8b_A          257 ---AELETVGLQWAAEINAKSPQAQRMLK  282 (334)
T ss_dssp             ---GGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence               6799999999999998754 344344

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=3.4e-44  Score=340.39  Aligned_cols=208  Identities=20%  Similarity=0.313  Sum_probs=176.6

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCC-cEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~-~F~aG~Dl~~~~~~~~~~~  139 (366)
                      .++.+.++++++|++|+||||+ +.|+||.+|+++|.++++.++.|++|++|| ++|.|+ +||+|+||+++..... ..
T Consensus        11 ~~~~i~~~~~~~va~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~~FcaG~Dl~~~~~~~~-~~   87 (273)
T 2uzf_A           11 EYDEIKYEFYEGIAKVTINRPE-VRNAFTPKTVAEMIDAFSRARDDQNVSVIV-LTGEGDLAFCSGGDQKKRGHGGY-VG   87 (273)
T ss_dssp             CCSSEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSEEEECCCCCC---------C
T ss_pred             CCceEEEEEECCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EecCCCCceecCcCcHhhhcccc-ch
Confidence            4567889999999999999998 799999999999999999999999999755 578888 9999999998754110 00


Q ss_pred             HHHH-HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         140 VKQI-SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       140 ~~~~-~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ...+ ...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  143 (273)
T 2uzf_A           88 EDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNA------------------------IFGQT  143 (273)
T ss_dssp             CSSSCCCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTC------------------------EEECC
T ss_pred             hhhHHHhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCC------------------------EEECc
Confidence            0000 0113567788999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       144 e~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  210 (273)
T 2uzf_A          144 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL-------------EKVEDETVQWCKEIM  210 (273)
T ss_dssp             GGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEEECG-------------GGSHHHHHHHHHHHT
T ss_pred             hhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccccCH-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             568888999999998


Q ss_pred             cCcc-cccccC
Q psy9060         299 SGKL-KINRIK  308 (366)
Q Consensus       299 ~~~~-~~~~~~  308 (366)
                      ..+. .+...|
T Consensus       211 ~~~~~a~~~~K  221 (273)
T 2uzf_A          211 KHSPTALRFLK  221 (273)
T ss_dssp             TSCHHHHHHHH
T ss_pred             hCCHHHHHHHH
Confidence            8764 344444

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=3.4e-44  Score=341.16  Aligned_cols=208  Identities=26%  Similarity=0.419  Sum_probs=168.7

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      ....+.++++++|++|+||||+ +.|++|.+|+.+|.++++.+++|++|++|| ++|.|+.||+|+||+++.........
T Consensus        18 ~~~~v~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   95 (278)
T 4f47_A           18 SGPDALVEQRGHTLIVTMNRPS-RRNALSGEMMQIMVEAWDRVDNDPDIRCCI-LTGAGGYFCAGMDLKAATKKPPGDSF   95 (278)
T ss_dssp             -CCSEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCCC-----------------
T ss_pred             CCCceEEEEECCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHhcCCCeeEEE-EECCCCcccCCcChHhhhccchhhhH
Confidence            4567899999999999999998 799999999999999999999999999755 58889999999999998653221111


Q ss_pred             HHHHHHHHHHHHHHH---cCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         141 KQISKSGQQILSEIE---SSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~---~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      . .....+.++..+.   ++||||||+|||+|+|||++|+++||+|||++++                        +|++
T Consensus        96 ~-~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~  150 (278)
T 4f47_A           96 K-DGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESA------------------------KFGI  150 (278)
T ss_dssp             ------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTC------------------------EEEC
T ss_pred             H-HHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCC------------------------EEEC
Confidence            1 0112344556666   9999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|
T Consensus       151 pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l  217 (278)
T 4f47_A          151 SEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPD-------------GQALTKALEIAEII  217 (278)
T ss_dssp             CGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-------------TCHHHHHHHHHHHH
T ss_pred             cccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeCh-------------hHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987             56888999999999


Q ss_pred             hcCcc-cccccC
Q psy9060         298 ASGKL-KINRIK  308 (366)
Q Consensus       298 a~~~~-~~~~~~  308 (366)
                      +..+. .+..+|
T Consensus       218 a~~~~~a~~~~K  229 (278)
T 4f47_A          218 AANGPLAVQAIL  229 (278)
T ss_dssp             HHSCHHHHHHHH
T ss_pred             HhCCHHHHHHHH
Confidence            98754 344444

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=2.3e-43  Score=332.44  Aligned_cols=204  Identities=27%  Similarity=0.379  Sum_probs=180.5

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC-CCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-PGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~-g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      .+.++++++|++|+||||+  .|++|.+|+++|.++++.++.|+++++||| +|. |+.||+|+|++++... +......
T Consensus         6 ~v~~~~~~~v~~itlnrp~--~Nal~~~~~~~L~~al~~~~~d~~vr~vVl-tg~~g~~F~aG~Dl~~~~~~-~~~~~~~   81 (260)
T 1sg4_A            6 LVEPDAGAGVAVMKFKNPP--VNSLSLEFLTELVISLEKLENDKSFRGVIL-TSDRPGVFSAGLDLTEMCGR-SPAHYAG   81 (260)
T ss_dssp             EEEEETTTTEEEEEECCTT--TTEECHHHHHHHHHHHHHHHHCTTCCEEEE-EESSTEESCCEECGGGGSSC-CHHHHHH
T ss_pred             EEEEEecCCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHhCCCceEEEE-EcCCCCceEcCcCHHHHhcc-CHHHHHH
Confidence            4666677899999999996  599999999999999999999999997655 776 7899999999998643 3334444


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEe--cCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAV--KDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~--~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      +...+++++.++.++||||||+|||+|+|||++|+++||+|||+  +++                        +|++||+
T Consensus        82 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a------------------------~f~~pe~  137 (260)
T 1sg4_A           82 YWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRY------------------------CIGLNET  137 (260)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTC------------------------CBSCCGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCC------------------------EEeCchh
Confidence            55667788999999999999999999999999999999999999  666                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       138 ~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  204 (260)
T 1sg4_A          138 QLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE-------------EQVQSTALSAIAQWMAI  204 (260)
T ss_dssp             GGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHHTS
T ss_pred             hhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCEecCH-------------HHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987             67889999999999987


Q ss_pred             ccc-ccccC
Q psy9060         301 KLK-INRIK  308 (366)
Q Consensus       301 ~~~-~~~~~  308 (366)
                      ++. +...|
T Consensus       205 ~~~a~~~~K  213 (260)
T 1sg4_A          205 PDHARQLTK  213 (260)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            643 43344

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.6e-44  Score=342.68  Aligned_cols=208  Identities=22%  Similarity=0.362  Sum_probs=175.3

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC--H-
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT--A-  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~--~-  137 (366)
                      +++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++++.....  . 
T Consensus         9 m~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (274)
T 3tlf_A            9 SFDTIKYEVDGHTATITLNRPD-ALNALSPHMITELRAAYHEAENDDRVWLLV-VTGTGRAFCSGADVKEIPEDGKVIYE   86 (274)
T ss_dssp             CCSSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTEEECCBC-------------
T ss_pred             cCCceEEEEECCEEEEEECCcc-ccCCCCHHHHHHHHHHHHHHhcCCCeEEEE-EeCCCCCcccCcCHHHHhhccccccc
Confidence            3467899999999999999998 799999999999999999999999999755 5888999999999998865322  0 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         138 ---DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       138 ---~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                         .........++.++..+.++||||||+|||+|+|||++|+++||+|||++++                        +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~  142 (274)
T 3tlf_A           87 RPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQA------------------------T  142 (274)
T ss_dssp             -CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTC------------------------E
T ss_pred             cchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCC------------------------E
Confidence               0000111134567778899999999999999999999999999999999987                        9


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCC--CcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK--TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVN  292 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~--~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~  292 (366)
                      |++||+++|++| +|++++|++++|..+|++|+++|+  .++|+||+++||||+|+|+             +++.+.+.+
T Consensus       143 f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~-------------~~l~~~a~~  208 (274)
T 3tlf_A          143 FFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEH-------------DRLLERAHE  208 (274)
T ss_dssp             EECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHH
T ss_pred             EECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCH-------------HHHHHHHHH
Confidence            999999999999 999999999999999999999999  9999999999999999987             678999999


Q ss_pred             HHHHHhcCcc-cccccC
Q psy9060         293 TASQLASGKL-KINRIK  308 (366)
Q Consensus       293 ~a~~la~~~~-~~~~~~  308 (366)
                      ++++|+..+. .+..+|
T Consensus       209 ~a~~la~~~~~a~~~~K  225 (274)
T 3tlf_A          209 IADIVNSNAPLAVRGTR  225 (274)
T ss_dssp             HHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHH
Confidence            9999998864 344444

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=9.8e-45  Score=342.65  Aligned_cols=208  Identities=26%  Similarity=0.378  Sum_probs=179.8

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVK  141 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~  141 (366)
                      ++.+.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++|++|| ++|.|+.||+|+||+++....... ..
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~-~~   84 (265)
T 3swx_A            8 YETLRIRRDGYVLVIGLNRPA-KRNAFDKTMLEELALALGEYETDTDLRAAV-LYGEGPLFTAGLDLASVAAEIQGG-AS   84 (265)
T ss_dssp             CSSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSBCCBCHHHHHHHHC---CC
T ss_pred             CceEEEEEECCEEEEEECCCc-ccCCCCHHHHHHHHHHHHHHhhCCCceEEE-EECCCCCcccCcChHHHhhcccch-hH
Confidence            567999999999999999998 789999999999999999999999999755 588888999999999886421110 00


Q ss_pred             HHHHHHHHHHHHH-HcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         142 QISKSGQQILSEI-ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       142 ~~~~~~~~~~~~i-~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      .+.....+++..+ .++||||||+|||+|+|||++|+++||+|||++++                        +|++||+
T Consensus        85 ~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~  140 (265)
T 3swx_A           85 LTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETA------------------------TFAQLEV  140 (265)
T ss_dssp             CCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECGGG
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCC------------------------EEECccc
Confidence            1112233456677 89999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..
T Consensus       141 ~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  207 (265)
T 3swx_A          141 NRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPV-------------GEHVDTAIAIAQTIARQ  207 (265)
T ss_dssp             GGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEEST-------------TCHHHHHHHHHHHHHHS
T ss_pred             ccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHHcCCCCEecCh-------------hHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999987             56888899999999987


Q ss_pred             cc-cccccCC
Q psy9060         301 KL-KINRIKP  309 (366)
Q Consensus       301 ~~-~~~~~~~  309 (366)
                      +. .+..+|.
T Consensus       208 ~p~a~~~~K~  217 (265)
T 3swx_A          208 APLGVQATLR  217 (265)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            64 3444453

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=2.7e-43  Score=345.40  Aligned_cols=196  Identities=23%  Similarity=0.414  Sum_probs=175.4

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhc--CCH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAAC--KTA  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~--~~~  137 (366)
                      ..+.|.++++|+|++||||||+ +.|+||.+|+.+|.++++.++.|++||+|| ++|.| ++||+|+||+++...  .+.
T Consensus         7 ~~e~vl~e~~~~Va~itLnrP~-~~NAl~~~m~~~l~~al~~~~~d~~vr~vv-ltg~G~~~FcaG~Dl~~~~~~~~~~~   84 (353)
T 4hdt_A            7 KNEDVLVNVEGGVGLLTLNRPK-AINSLTHGMVTTMAERLAAWENDDSVRAVL-LTGAGERGLCAGGDVVAIYHSAKADG   84 (353)
T ss_dssp             -CCSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EEESSSSBSBCCBCHHHHHHHHHTTS
T ss_pred             CCCcEEEEEECCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EEeCCCCCEecCcCHHHHhhccchhh
Confidence            4578999999999999999999 799999999999999999999999999755 57776 799999999988642  233


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      .....+....+.++..|.++|||+||+|||+|+|||++|+++||+|||++++                        +|++
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a------------------------~f~~  140 (353)
T 4hdt_A           85 AEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTT------------------------KMAM  140 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTC------------------------EEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhc------------------------cccC
Confidence            4455666677889999999999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      ||+++|++|++|++++|+|++| .++++|++||++++|+||+++||||+|||+             ++|.+.+.+++.+
T Consensus       141 pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~la~~  205 (353)
T 4hdt_A          141 PEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPH-------------DKIDEFTRAVIAD  205 (353)
T ss_dssp             CGGGGTCCCCTTHHHHHHTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCG-------------GGHHHHHHHHHHH
T ss_pred             cccccccCCCccceehhhhhhh-HHHHHHHhcCCCCCHHHHHHcCCCcEEeCH-------------HHHHHHHHHHHHh
Confidence            9999999999999999999999 699999999999999999999999999997             5677777776654

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.5e-43  Score=338.53  Aligned_cols=208  Identities=25%  Similarity=0.410  Sum_probs=181.2

Q ss_pred             cCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCC-cEEcCCCcchhhhcCCHH
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADISMLAACKTAD  138 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~-~F~aG~Dl~~~~~~~~~~  138 (366)
                      ..++.+.++++++|++|+||||+  .|++|.+|+.+|.++++.++.|++||+||| +|.|+ .||+|+||+++..... .
T Consensus         5 ~~~~~v~~~~~~~Va~itlnrP~--~Nal~~~~~~~L~~al~~~~~d~~vr~vVl-tg~G~~ff~~G~Dl~~~~~~~~-~   80 (289)
T 3h0u_A            5 ASYETIKARLDGTVLSATFNAPP--MNLIGPEVVRDLVALLEELAHPTAPRVVIF-DSADADFFFPHVDMTKVPEYTA-E   80 (289)
T ss_dssp             CCCSSEEEEEETTEEEEEECCTT--TCCBCHHHHHHHHHHHHHTTSTTSCSEEEE-EECSSSEEECSBCTTCHHHHHH-H
T ss_pred             CCCCeEEEEEECCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-ECCCCCceeCCcCHHHHhhcCc-c
Confidence            34678999999999999999997  599999999999999999999999997655 77765 4566779998865211 1


Q ss_pred             HHH---HHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC-CccCCCchhhhhhhhhhhhccccccc
Q psy9060         139 QVK---QISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD-KKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       139 ~~~---~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~-ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                      ...   .+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++ +                        +
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a------------------------~  136 (289)
T 3h0u_A           81 AAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENA------------------------I  136 (289)
T ss_dssp             HHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTC------------------------E
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCc------------------------E
Confidence            111   22345678899999999999999999999999999999999999998 6                        9


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      |++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.++|
T Consensus       137 f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-------------~~l~~~a~~lA  203 (289)
T 3h0u_A          137 LGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPD-------------AELDEFVAGIA  203 (289)
T ss_dssp             EECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-------------HHHHHHHHHHH
T ss_pred             EeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCH-------------HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987             78999999999


Q ss_pred             HHHhcCccc-ccccC
Q psy9060         295 SQLASGKLK-INRIK  308 (366)
Q Consensus       295 ~~la~~~~~-~~~~~  308 (366)
                      ++|+..++. +..+|
T Consensus       204 ~~la~~~p~a~~~~K  218 (289)
T 3h0u_A          204 ARMSGFPRDALIAAK  218 (289)
T ss_dssp             HHHHTSCHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHH
Confidence            999987643 44444

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=1.1e-43  Score=331.58  Aligned_cols=199  Identities=16%  Similarity=0.248  Sum_probs=176.5

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHH
Q psy9060          65 FKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQIS  144 (366)
Q Consensus        65 i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  144 (366)
                      ..++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++....... .    
T Consensus         5 ~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~-~----   77 (243)
T 2q35_A            5 QLTELGNGVVQITMKDES-SRNGFSPSIVEGLRHCFSVVAQNQQYKVVI-LTGYGNYFSSGASKEFLIRKTRGE-V----   77 (243)
T ss_dssp             EEEEEETTEEEEEECCGG-GTSBSCHHHHHHHHHHHHHHHHCTTCCEEE-EECBTTEEECBSCHHHHHHHHTTC-C----
T ss_pred             EEEEeeCCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCeeCCCChHHHhhccchh-h----
Confidence            456778999999999998 799999999999999999999999999755 578899999999999875421100 0    


Q ss_pred             HHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC
Q psy9060         145 KSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL  224 (366)
Q Consensus       145 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl  224 (366)
                       ..++++..+.++|||+||+|||+|+|||++|+++||+|||++++                        +|++||+++|+
T Consensus        78 -~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~Gl  132 (243)
T 2q35_A           78 -EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQES------------------------VYATNFMKYGF  132 (243)
T ss_dssp             -CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSS------------------------EEECCHHHHTS
T ss_pred             -HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCC------------------------EEECCccccCC
Confidence             12467788999999999999999999999999999999999987                        99999999999


Q ss_pred             CCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-c
Q psy9060         225 LPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-K  303 (366)
Q Consensus       225 ~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-~  303 (366)
                      +|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++++..+. .
T Consensus       133 ~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~~~a  199 (243)
T 2q35_A          133 TPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSR-------------QDVLNYAQQLGQKIAKSPRLS  199 (243)
T ss_dssp             CCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEECH-------------HHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEecCh-------------hHHHHHHHHHHHHHHhCCHHH
Confidence            9999999999999999999999999999999999999999999987             7899999999999998764 3


Q ss_pred             ccccC
Q psy9060         304 INRIK  308 (366)
Q Consensus       304 ~~~~~  308 (366)
                      +...|
T Consensus       200 ~~~~K  204 (243)
T 2q35_A          200 LVALK  204 (243)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.5e-43  Score=333.65  Aligned_cols=205  Identities=30%  Similarity=0.480  Sum_probs=176.9

Q ss_pred             CcceeEEE---eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH
Q psy9060          62 TKHFKEKA---VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD  138 (366)
Q Consensus        62 ~~~i~~~~---~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~  138 (366)
                      ++.+.++.   .++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+||+++.... ..
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~-~~   79 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPK-ALNALCNGLIEELNQALETFEEDPAVGAIV-LTGGEKAFAAGADIKEMQNRT-FQ   79 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EECCSSEEECCBCHHHHTTCC-HH
T ss_pred             cccceeecccCcCCEEEEEEcCCC-ccCCCCHHHHHHHHHHHHHHHhCCCeeEEE-EECCCCCccCCcChHhhhccc-ch
Confidence            45577776   7899999999998 789999999999999999999999999755 588899999999999875432 11


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                        ......+.+.+.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~p  133 (260)
T 1mj3_A           80 --DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA------------------------QFGQP  133 (260)
T ss_dssp             --HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECG
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCC------------------------EEeCc
Confidence              1122222334677889999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       134 e~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la  200 (260)
T 1mj3_A          134 EILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-------------ETLVEEAIQCAEKIA  200 (260)
T ss_dssp             GGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-------------TTHHHHHHHHHHHHH
T ss_pred             ccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEeCh-------------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             568889999999998


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      ..+.. +...|
T Consensus       201 ~~~~~a~~~~K  211 (260)
T 1mj3_A          201 NNSKIIVAMAK  211 (260)
T ss_dssp             HSCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            87543 43344

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=6.5e-43  Score=332.54  Aligned_cols=209  Identities=20%  Similarity=0.313  Sum_probs=175.8

Q ss_pred             cCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC---
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT---  136 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~---  136 (366)
                      ..++.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+||+++.....   
T Consensus        17 ~~~~~v~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~G~~F~aG~Dl~~~~~~~~~~~   94 (279)
T 3t3w_A           17 RTEMYIDYDVSDRIATITLNRPE-AANAQNPELLDELDAAWTRAAEDNDVSVIV-LRANGKHFSAGHDLRGGGPVPDKLT   94 (279)
T ss_dssp             --CCSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEECSSCSBCCBCCC--------CC
T ss_pred             ccCCeEEEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCceeeccChHhhhhcccccc
Confidence            34678999999999999999998 799999999999999999999999999755 5888999999999998865321   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         137 -ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       137 -~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                       ..........+++++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f  150 (279)
T 3t3w_A           95 LEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDA------------------------LF  150 (279)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTC------------------------EE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCC------------------------EE
Confidence             11122223455678899999999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|+ |+.+++.+ ++++|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.++++
T Consensus       151 ~~pe~~~Gl-~~~~~~~~-~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~  215 (279)
T 3t3w_A          151 SDPVVLMDI-GGVEYHGH-TWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPR-------------DRLDAETRALAG  215 (279)
T ss_dssp             ECCGGGGTC-SSCSSCCH-HHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-------------GGHHHHHHHHHH
T ss_pred             eCcHHhcCC-CCchHHHH-HhhcCHHHHHHHHHcCCccCHHHHHHCCCCcEeeCh-------------HHHHHHHHHHHH
Confidence            999999999 55555554 999999999999999999999999999999999987             678999999999


Q ss_pred             HHhcCccc-ccccCC
Q psy9060         296 QLASGKLK-INRIKP  309 (366)
Q Consensus       296 ~la~~~~~-~~~~~~  309 (366)
                      +|+..+.. +...|.
T Consensus       216 ~la~~~~~a~~~~K~  230 (279)
T 3t3w_A          216 EIAKMPPFALRQAKR  230 (279)
T ss_dssp             HHHTSCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH
Confidence            99988643 444453

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=8.1e-43  Score=329.83  Aligned_cols=205  Identities=24%  Similarity=0.376  Sum_probs=174.8

Q ss_pred             cceeEE----EeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH
Q psy9060          63 KHFKEK----AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD  138 (366)
Q Consensus        63 ~~i~~~----~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~  138 (366)
                      +.+.++    .+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++||+|| ++|.|+.||+|+|++++....+..
T Consensus         7 ~~v~~~~~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~   84 (267)
T 3oc7_A            7 ALVDYAGPAATGGPVARLTLNSPH-NRNALSTALVSQLHQGLRDASSDPAVRVVV-LAHTGGTFCAGADLSEAGSGGSPS   84 (267)
T ss_dssp             SSEEEECHHHHSSSEEEEEECCGG-GTSCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEECSSEEECCBC-----------
T ss_pred             cccCCCCccceeCCEEEEEecCCC-ccCCCCHHHHHHHHHHHHHHhcCCCceEEE-EECCCCceeCCcCchhhhhccCch
Confidence            467788    78999999999998 789999999999999999999999999755 588889999999999986211111


Q ss_pred             H----HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         139 Q----VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       139 ~----~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                      .    ...+...+++++..+.++||||||+|||+|+|||++|+++||+|||++++                        +
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~  140 (267)
T 3oc7_A           85 SAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRS------------------------S  140 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTC------------------------E
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCC------------------------E
Confidence            1    12455667889999999999999999999999999999999999999987                        9


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      |++||+++|++|++|++++|+ ++|..+|++|+++|+.++|+||+++||||+| +              +++.+.+.+++
T Consensus       141 f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v-~--------------~~l~~~a~~~a  204 (267)
T 3oc7_A          141 FALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA-A--------------EDLDAAIDQLV  204 (267)
T ss_dssp             EECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE-C--------------SSHHHHHHHHH
T ss_pred             EeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh-h--------------HHHHHHHHHHH
Confidence            999999999999999999999 8999999999999999999999999999999 4              35888999999


Q ss_pred             HHHhcCccc-ccccCC
Q psy9060         295 SQLASGKLK-INRIKP  309 (366)
Q Consensus       295 ~~la~~~~~-~~~~~~  309 (366)
                      ++|+..+.. +..+|.
T Consensus       205 ~~la~~~~~a~~~~K~  220 (267)
T 3oc7_A          205 TDVGRGSPQGLAASKA  220 (267)
T ss_dssp             HHHHTSCHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHH
Confidence            999987643 444453

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.6e-43  Score=334.70  Aligned_cols=205  Identities=19%  Similarity=0.286  Sum_probs=174.0

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-HHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-ADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-~~~  139 (366)
                      +++.+.++++++|++||||||+ +.|++|.+|+.+|.++++.++.| ++|+|| ++|.|+.||+|+||+++..... ...
T Consensus         5 ~~~~i~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d-~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (267)
T 3hp0_A            5 TYQTIKVRFQASVCYITFHRPE-ANNTINDTLIEECLQVLNQCETS-TVTVVV-LEGLPEVFCFGADFQEIYQEMKRGRK   81 (267)
T ss_dssp             CCSSEEEEEETTEEEEEECCGG-GTTCBCSHHHHHHHHHHHHHHHS-SCCEEE-EECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred             CCceEEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHhcC-CCEEEE-EECCCCceecCcCHHHHHhcccChHH
Confidence            4567999999999999999999 78999999999999999999986 599655 5889999999999999865311 111


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      .......++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe  137 (267)
T 3hp0_A           82 QASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTA------------------------SFSLSE  137 (267)
T ss_dssp             SCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTC------------------------EEECCG
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCC------------------------EEECch
Confidence            11123455678899999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++| +++|++++|..+|++|++||+.++|+||+++||||+|+|+.            +   +.+.+++++|+.
T Consensus       138 ~~~Gl~p~~g-~~~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~------------~---~~~~~~a~~la~  201 (267)
T 3hp0_A          138 LLFGLYPACV-LPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAES------------D---VLLRKHLLRLRR  201 (267)
T ss_dssp             GGGTCCCTTT-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCT------------T---HHHHHHHHHHTT
T ss_pred             hccCcCchhH-HHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCCH------------H---HHHHHHHHHHHh
Confidence            9999999885 77999999999999999999999999999999999999851            1   235678888888


Q ss_pred             Ccc-cccccC
Q psy9060         300 GKL-KINRIK  308 (366)
Q Consensus       300 ~~~-~~~~~~  308 (366)
                      .++ .+..+|
T Consensus       202 ~~p~a~~~~K  211 (267)
T 3hp0_A          202 LNKKGIAHYK  211 (267)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            754 344444

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.9e-43  Score=334.21  Aligned_cols=208  Identities=28%  Similarity=0.433  Sum_probs=176.2

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      ++.+.++++++|++|+||||+ +.|+||.+|+.+|.++++.++.|++||+|| ++|.| +.||+|+||+++.........
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~~F~aG~Dl~~~~~~~~~~~~   85 (267)
T 3r9t_A            8 APGALAERRGNVMVITINRPE-ARNAINAAVSIGVGDALEEAQHDPEVRAVV-LTGAGDKSFCAGADLKAIARRENLYHP   85 (267)
T ss_dssp             CCSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSSEEECCBCHHHHHTTCCCSCT
T ss_pred             CCcEEEEEECCEEEEEEcCCc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCceeCCcChHHHhcccchhhH
Confidence            456889999999999999998 799999999999999999999999999755 57887 599999999998653221100


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      . ........+ .+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+
T Consensus        86 ~-~~~~~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~  139 (267)
T 3r9t_A           86 D-HPEWGFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERA------------------------QFGLPEV  139 (267)
T ss_dssp             T-CGGGCGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTC------------------------EECCGGG
T ss_pred             H-HHhHHHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCC------------------------EEECccc
Confidence            0 000000112 1238999999999999999999999999999999987                        9999999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.++|++|+..
T Consensus       140 ~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~  206 (267)
T 3r9t_A          140 KRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEA-------------GSVLDAALALASAITVN  206 (267)
T ss_dssp             GTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECT-------------TCHHHHHHHHHHHHHTS
T ss_pred             ccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEcCh-------------hHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999997             56889999999999988


Q ss_pred             cc-cccccCCC
Q psy9060         301 KL-KINRIKPM  310 (366)
Q Consensus       301 ~~-~~~~~~~~  310 (366)
                      ++ .+..+|..
T Consensus       207 ~p~a~~~~K~~  217 (267)
T 3r9t_A          207 APLSVQASKRI  217 (267)
T ss_dssp             CHHHHHHHHHH
T ss_pred             ChHHHHHHHHH
Confidence            64 34445543

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=2.1e-42  Score=324.85  Aligned_cols=196  Identities=19%  Similarity=0.310  Sum_probs=175.5

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHH
Q psy9060          64 HFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQI  143 (366)
Q Consensus        64 ~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~  143 (366)
                      .+.++++++|++|+||||+ +.|++|.+|+++|.++++.+++ +++|+|| ++|.|+.||+|+|++++.... .......
T Consensus         8 ~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~-~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~-~~~~~~~   83 (254)
T 3isa_A            8 PLAIERRPAAWTFTLSRPE-KRNALSAELVEALIDGVDAAHR-EQVPLLV-FAGAGRNFSAGFDFTDYETQS-EGDLLLR   83 (254)
T ss_dssp             SEEEEECSSEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHH-TTCSEEE-EEESTTCSCCCBCCTTCTTSC-HHHHHHH
T ss_pred             eEEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHhhc-CCcEEEE-EECCCCceeeCcChHHhhccC-chhHHHH
Confidence            3889999999999999998 7999999999999999999987 5899755 588899999999999986543 2333333


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      ...++.++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++|
T Consensus        84 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~G  139 (254)
T 3isa_A           84 MVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEA------------------------GFRMPGLKFG  139 (254)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTC------------------------EEECCGGGGT
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCC------------------------EEECchhccC
Confidence            4456788999999999999999999999999999999999999987                        9999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  303 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~  303 (366)
                      ++|   ++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++++..+..
T Consensus       140 l~p---g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~~~  203 (254)
T 3isa_A          140 LVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQ-------------AQWPALIDAAAEAATALDPA  203 (254)
T ss_dssp             CCC---SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCG-------------GGHHHHHHHHHHHHTTSCHH
T ss_pred             ccH---HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEeCh-------------hHHHHHHHHHHHHHHcCCHH
Confidence            998   47999999999999999999999999999999999999987             67889999999999987643

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=9.7e-43  Score=339.11  Aligned_cols=209  Identities=21%  Similarity=0.313  Sum_probs=177.4

Q ss_pred             ccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH
Q psy9060          59 KNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD  138 (366)
Q Consensus        59 k~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~  138 (366)
                      ...+++|.++++++|++|+||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.|+.||+|+||+++.......
T Consensus        31 ~~~~~~i~~e~~~~Va~ItLnrP~-~~NAl~~~m~~eL~~al~~~~~d~~vrvvV-ltG~G~~FcaG~Dl~~~~~~~~~~  108 (333)
T 3njd_A           31 FDNLKTMTYEVTDRVARITFNRPE-KGNAIVADTPLELSALVERADLDPDVHVIL-VSGRGEGFCAGFDLSAYAEGSSSA  108 (333)
T ss_dssp             TTSCSSEEEEEETTEEEEEECCGG-GTTCBCTHHHHHHHHHHHHHHHCTTCCEEE-EEESTTSSBCCBC-----------
T ss_pred             CCCCCeEEEEEECCEEEEEeCCCC-ccCCCCHHHHHHHHHHHHHHhhCCCcEEEE-EECCCCceecCcCHHHHhhccccc
Confidence            356788999999999999999998 799999999999999999999999999755 589999999999999986432110


Q ss_pred             -----------------------------HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         139 -----------------------------QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       139 -----------------------------~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                                                   ....+...++.++..|.++||||||+|||+|+|||++|+++||+|||++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a  188 (333)
T 3njd_A          109 GGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADA  188 (333)
T ss_dssp             ----CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTC
T ss_pred             ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCC
Confidence                                         112344556778889999999999999999999999999999999999987


Q ss_pred             ccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060         190 KTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVE  269 (366)
Q Consensus       190 k~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~  269 (366)
                                              +|++||+++|++|++|   +|++++|..+|++|++||+.++|+||+++||||+|||
T Consensus       189 ------------------------~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~  241 (333)
T 3njd_A          189 ------------------------KIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPD  241 (333)
T ss_dssp             ------------------------EEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCC
T ss_pred             ------------------------eeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecC
Confidence                                    9999999999999876   5899999999999999999999999999999999998


Q ss_pred             CCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-ccccCC
Q psy9060         270 PLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-INRIKP  309 (366)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~~~~~~  309 (366)
                      +             +++.+.+.++|++|+..+.. +..+|.
T Consensus       242 ~-------------~~l~~~a~~lA~~ia~~~~~al~~~K~  269 (333)
T 3njd_A          242 P-------------ADLDARTERLVERIAAMPVNQLIMAKL  269 (333)
T ss_dssp             G-------------GGHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             h-------------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7             67999999999999988653 444453

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.8e-43  Score=334.04  Aligned_cols=204  Identities=28%  Similarity=0.531  Sum_probs=169.2

Q ss_pred             ccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH
Q psy9060          59 KNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD  138 (366)
Q Consensus        59 k~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~  138 (366)
                      ...++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++++.......
T Consensus        11 ~~~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~   88 (265)
T 3qxi_A           11 GDTEPEVLVEQRDRILIITINRPK-AKNSVNAAVSRALADAMDRLDADAGLSVGI-LTGAGGSFCAGMDLKAFARGENVV   88 (265)
T ss_dssp             ----CCEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCCCCSBC-------CCCE
T ss_pred             CCCCCeEEEEEECCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EECCCCCeeCCCChhhhhccchhh
Confidence            345678999999999999999998 789999999999999999999999999755 588889999999999886532211


Q ss_pred             HHHHHHHHHHHH-HHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         139 QVKQISKSGQQI-LSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       139 ~~~~~~~~~~~~-~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      ..      .+.+ +..+.. ||||||+|||+|+|||++|+++||+|||++++                        +|++
T Consensus        89 ~~------~~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~  137 (265)
T 3qxi_A           89 VE------GRGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDS------------------------AFGI  137 (265)
T ss_dssp             ET------TTEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEEC
T ss_pred             hh------hhhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCC------------------------EEEC
Confidence            00      0111 333444 99999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|
T Consensus       138 pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~l  204 (265)
T 3qxi_A          138 PEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEP-------------GAALDAAIALAEKI  204 (265)
T ss_dssp             GGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-------------TCHHHHHHHHHHHH
T ss_pred             cccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeCh-------------hHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987             56888999999999


Q ss_pred             hcCccc-ccccC
Q psy9060         298 ASGKLK-INRIK  308 (366)
Q Consensus       298 a~~~~~-~~~~~  308 (366)
                      +..+.. +..+|
T Consensus       205 a~~~p~a~~~~K  216 (265)
T 3qxi_A          205 TANGPLAVAATK  216 (265)
T ss_dssp             HTSCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            987643 43344

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.7e-43  Score=332.66  Aligned_cols=200  Identities=27%  Similarity=0.495  Sum_probs=174.9

Q ss_pred             cceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          63 KHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        63 ~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +.+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++|| ++|.|+.||+|+|++++.......... 
T Consensus         7 ~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vV-ltg~g~~F~aG~Dl~~~~~~~~~~~~~-   83 (256)
T 3trr_A            7 DEVLIEQRDRVLLITINRPD-ARNAVNRAVSQGLAAAADQLDSSADLSVAI-ITGAGGNFCAGMDLKAFVSGEAVLSER-   83 (256)
T ss_dssp             CSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEEGGGCCCCCBCHHHHHHTCCCEETT-
T ss_pred             CceEEEEECCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHhcCCCeEEEE-EECCCCceecCcCHHHhccccchhhhh-
Confidence            46889999999999999998 789999999999999999999999999755 588889999999999986532211100 


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhc
Q psy9060         143 ISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVML  222 (366)
Q Consensus       143 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  222 (366)
                         .+ . +..+ ++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++
T Consensus        84 ---~~-~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a------------------------~f~~pe~~~  133 (256)
T 3trr_A           84 ---GL-G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSA------------------------KFGIPEVKR  133 (256)
T ss_dssp             ---EE-T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTC------------------------EECCCGGGG
T ss_pred             ---hh-h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCC------------------------EEEehhhcc
Confidence               11 1 2334 8999999999999999999999999999999987                        999999999


Q ss_pred             cCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc
Q psy9060         223 GLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL  302 (366)
Q Consensus       223 Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~  302 (366)
                      |++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|+|+             +++.+.+.+++++|+..+.
T Consensus       134 Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~~  200 (256)
T 3trr_A          134 GLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDD-------------GQALDTALELAAKITANGP  200 (256)
T ss_dssp             TCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEECT-------------TCHHHHHHHHHHHHHTSCH
T ss_pred             CCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEecCh-------------HHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999999987             5688899999999998764


Q ss_pred             c-ccccC
Q psy9060         303 K-INRIK  308 (366)
Q Consensus       303 ~-~~~~~  308 (366)
                      . +..+|
T Consensus       201 ~a~~~~K  207 (256)
T 3trr_A          201 LAVAATK  207 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3 44444

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.3e-43  Score=329.56  Aligned_cols=193  Identities=26%  Similarity=0.391  Sum_probs=166.6

Q ss_pred             cCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHH
Q psy9060          60 NSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        60 ~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      .+++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.| ++++|| ++|.|+.||+|+||+....      
T Consensus        18 ~~~~~i~~~~~~~v~~itlnrP~-~~Nal~~~~~~~L~~al~~~~~d-~vr~vV-ltg~G~~FcaG~Dl~~~~~------   88 (264)
T 3he2_A           18 GPGSMIGITQAEAVLTIELQRPE-RRNALNSQLVEELTQAIRKAGDG-SARAIV-LTGQGTAFCAGADLSGDAF------   88 (264)
T ss_dssp             ----CEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHCC----CCSEEE-EEESSSCSBCCBCCTTCTT------
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHhhC-CceEEE-EECCCCCccCCcCCccchh------
Confidence            35667999999999999999998 79999999999999999999988 999755 5888999999999983211      


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+.+.+..++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||
T Consensus        89 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe  144 (264)
T 3he2_A           89 AADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDA------------------------FFQFPT  144 (264)
T ss_dssp             GGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTC------------------------EEECTH
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCC------------------------EEECcc
Confidence            11233456788899999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|++++|++++|..+|++|+++|+.++|+||+++||||+|++.                 +.+.++|++|+.
T Consensus       145 ~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~~-----------------~~a~~~A~~la~  207 (264)
T 3he2_A          145 SKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTL-----------------ADAQAWAAEIAR  207 (264)
T ss_dssp             HHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECCH-----------------HHHHHHHHHHHT
T ss_pred             cccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEecH-----------------HHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999852                 356788888887


Q ss_pred             Ccc
Q psy9060         300 GKL  302 (366)
Q Consensus       300 ~~~  302 (366)
                      .+.
T Consensus       208 ~~p  210 (264)
T 3he2_A          208 LAP  210 (264)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            753

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=1.3e-42  Score=329.22  Aligned_cols=203  Identities=28%  Similarity=0.512  Sum_probs=175.1

Q ss_pred             eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVKQISKSGQ  148 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  148 (366)
                      +++|++|+||||+ +.|++|.+|+++|.++++.++.|+++++||| +|.| +.||+|+||+++... .......+...++
T Consensus        19 ~~~v~~itlnrp~-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl-tg~g~~~F~aG~Dl~~~~~~-~~~~~~~~~~~~~   95 (272)
T 1hzd_A           19 NRGIVVLGINRAY-GKNSLSKNLIKMLSKAVDALKSDKKVRTIII-RSEVPGIFCAGADLKERAKM-SSSEVGPFVSKIR   95 (272)
T ss_dssp             GTTEEEEEECCGG-GTTCBCTTHHHHHHHHHHHHHHCSSCSEEEE-EESBTEEEECCBCHHHHTTS-CHHHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE-ecCCCCCCcCCCChhhhhcc-ChHHHHHHHHHHH
Confidence            5889999999998 7899999999999999999999999997655 7766 799999999998653 2333444555677


Q ss_pred             HHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060         149 QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA  228 (366)
Q Consensus       149 ~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~  228 (366)
                      +++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++||+++|++|++
T Consensus        96 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a------------------------~f~~pe~~~Gl~p~~  151 (272)
T 1hzd_A           96 AVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA------------------------KMGLVETKLAIIPGG  151 (272)
T ss_dssp             HHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTC------------------------EEECCGGGGTCCCCS
T ss_pred             HHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCC------------------------EEeCchhccCCCCCc
Confidence            88999999999999999999999999999999999999987                        999999999999999


Q ss_pred             hHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-ccccc
Q psy9060         229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRI  307 (366)
Q Consensus       229 gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-~~~~~  307 (366)
                      |++++|++++|..+|++|+++|+.++|+||+++||||+|+|+     +++.    +.+.+.+.+++++|+..++ .+..+
T Consensus       152 g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-----~~l~----~~~~~~a~~~a~~la~~~p~a~~~~  222 (272)
T 1hzd_A          152 GGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ-----NQEG----DAAYRKALDLAREFLPQGPVAMRVA  222 (272)
T ss_dssp             SHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECC-----CTTS----CHHHHHHHHHHHTTTTSCHHHHHHH
T ss_pred             hHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceecCh-----hhhh----HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999999999999999999999987     1221    2355677888888877654 34434


Q ss_pred             C
Q psy9060         308 K  308 (366)
Q Consensus       308 ~  308 (366)
                      |
T Consensus       223 K  223 (272)
T 1hzd_A          223 K  223 (272)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1e-42  Score=369.76  Aligned_cols=248  Identities=33%  Similarity=0.460  Sum_probs=198.3

Q ss_pred             cCCcceeEE-EeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCC-cEEcCCCcchhhhcCCH
Q psy9060          60 NSTKHFKEK-AVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG-CFIAGADISMLAACKTA  137 (366)
Q Consensus        60 ~~~~~i~~~-~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~-~F~aG~Dl~~~~~~~~~  137 (366)
                      +++..+.++ .+++|++||||||  +.|+||.+|+++|.++++.++.|++|++||| +| |+ .||+|+||+++......
T Consensus         4 ~~~~~i~~~~~~~~va~itlnrp--~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl-tg-g~~~F~aG~Dl~~~~~~~~~   79 (725)
T 2wtb_A            4 RTKGKTVMEVGGDGVAVITLINP--PVNSLSFDVLYNLKSNYEEALSRNDVKAIVI-TG-AKGRFSGGFDISGFGEMQKG   79 (725)
T ss_dssp             ---CEEEEEECTTSEEEEEEECT--TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEE-EE-SSSCCBCSSCC---------
T ss_pred             CcCCeEEEEEeeCCEEEEEECCC--CCCCCCHHHHHHHHHHHHHHHhCCCceEEEE-EC-CCCcccCCcCHHHHhcccch
Confidence            345568888 6789999999999  4899999999999999999999999998665 66 55 99999999988542110


Q ss_pred             HH--HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc
Q psy9060         138 DQ--VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL  215 (366)
Q Consensus       138 ~~--~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~  215 (366)
                      ..  ...+...+++++.++.++||||||+|||+|+|||++|+++||+|||++++                        +|
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a------------------------~f  135 (725)
T 2wtb_A           80 NVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAA------------------------QL  135 (725)
T ss_dssp             ---CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTC------------------------EE
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCC------------------------EE
Confidence            00  01122345667778899999999999999999999999999999999987                        99


Q ss_pred             cccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy9060         216 GLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTAS  295 (366)
Q Consensus       216 ~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~  295 (366)
                      ++||+++|++|++|++++|+|++|..+|++|++||+.++|+||+++||||+|+|+             +++.+.|.++++
T Consensus       136 glpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~  202 (725)
T 2wtb_A          136 GLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPP-------------AELVTTARRWAL  202 (725)
T ss_dssp             ECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECCT-------------TTHHHHHHHHHH
T ss_pred             eCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceEcCh-------------hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987             568889999999


Q ss_pred             HHhcC--ccc-ccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHh
Q psy9060         296 QLASG--KLK-INRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFF  358 (366)
Q Consensus       296 ~la~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~  358 (366)
                      +++..  ++. ..+.+.-. .       ..+.... .+..+++++.+++++ ||||..+++++...
T Consensus       203 ~la~~~~p~~~~~~~~~~~-~-------~~~~~~~-~~~~a~~~~~~~~~g-~pA~~~~k~~~~~~  258 (725)
T 2wtb_A          203 DIVGRRKPWVSSVSKTDKL-P-------PLGEARE-ILTFAKAQTLKRAPN-MKHPLMCLDAIEVG  258 (725)
T ss_dssp             HHHTTSSCCCCGGGCCTTS-C-------CHHHHHH-HHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred             HHHhcCCChhhhhhhcccc-C-------ccchHHH-HHHHHHHHHHHhccC-CcHHHHHHHHHHHh
Confidence            99876  321 11100001 0       0112333 788999999999999 99999999998764

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=2.5e-42  Score=332.43  Aligned_cols=208  Identities=18%  Similarity=0.290  Sum_probs=174.9

Q ss_pred             CcceeE--EEeCCEEEEEecCCCCC----CCCCCHHHHHHHHHHHHHhhc-----CCCccEEEEEeeCCCcEEcCCCcch
Q psy9060          62 TKHFKE--KAVGDVLVVTLDSPGVK----VNSLNSEVMSEIQSILRRIQS-----DSSIRSAVIISGKPGCFIAGADISM  130 (366)
Q Consensus        62 ~~~i~~--~~~~~Va~Itlnrp~~~----~Nal~~~~~~eL~~al~~~~~-----d~~v~~vVl~~g~g~~F~aG~Dl~~  130 (366)
                      |+++.+  +++++|++|+||||+ +    .|++|.+|+.+|.++++.++.     |++|++|| ++|.|+.||+|+||++
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~-k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vV-ltg~G~~FcaG~Dl~~  106 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADL-AINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVV-LASDSDVFNLGGDLAL  106 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC------CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEE-EEESSSSSBCCBCHHH
T ss_pred             CceEEEEEEEECCEEEEEECCcc-ccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEE-EECCCCCeecCcCHHH
Confidence            455544  567999999999998 6    459999999999999999987     58999755 5888999999999999


Q ss_pred             hhhc---CCHHHHHHHHHHHHHHHHHH---HcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhh
Q psy9060         131 LAAC---KTADQVKQISKSGQQILSEI---ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHY  204 (366)
Q Consensus       131 ~~~~---~~~~~~~~~~~~~~~~~~~i---~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~  204 (366)
                      +...   ........+...+...+..+   .++||||||+|||+|+|||++|+++||+|||++++               
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a---------------  171 (305)
T 3m6n_A          107 FCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGV---------------  171 (305)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTC---------------
T ss_pred             HHhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCC---------------
Confidence            8642   12223333333444444444   46899999999999999999999999999999987               


Q ss_pred             hhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHH
Q psy9060         205 RIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTME  284 (366)
Q Consensus       205 ~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~  284 (366)
                               +|++||+++|++|++|++++|++++|..+|++|++||+.++|+||+++||||+|+|+             +
T Consensus       172 ---------~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-------------~  229 (305)
T 3m6n_A          172 ---------MMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR-------------G  229 (305)
T ss_dssp             ---------EEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-------------T
T ss_pred             ---------EEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecCh-------------h
Confidence                     999999999999999999999999999999999999999999999999999999987             5


Q ss_pred             HHHHHHHHHHHHHhcCcccccccC
Q psy9060         285 YLEEVAVNTASQLASGKLKINRIK  308 (366)
Q Consensus       285 ~l~~~a~~~a~~la~~~~~~~~~~  308 (366)
                      ++.+.+.++|++|+..|..+..+|
T Consensus       230 ~l~~~a~~~a~~la~~p~a~~~~K  253 (305)
T 3m6n_A          230 QGVAAVEQVIRESKRTPHAWAAMQ  253 (305)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhChHHHHHHH
Confidence            688899999999987555455444

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=2.8e-41  Score=332.32  Aligned_cols=182  Identities=26%  Similarity=0.423  Sum_probs=161.3

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC--CHH
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK--TAD  138 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~--~~~  138 (366)
                      .+.+.++++++|++|+||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.| +.||+|+||+++....  ...
T Consensus         5 ~~~v~~~~~~~v~~itLnrP~-~~Nal~~~m~~~L~~al~~~~~d~~vr~vV-ltG~g~~~FcaG~Dl~~~~~~~~~~~~   82 (363)
T 3bpt_A            5 AEEVLLGKKGCTGVITLNRPK-FLNALTLNMIRQIYPQLKKWEQDPETFLII-IKGAGGKAFCAGGDIRVISEAEKAKQK   82 (363)
T ss_dssp             CCSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEETTSSEEECCBCHHHHHHHHTSSCC
T ss_pred             CcceEEEEECCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHHhCCCeEEEE-EECCCCCcccCCcCHHHHHhhcccccH
Confidence            346888999999999999998 799999999999999999999999999755 57876 8999999999875421  111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+......++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++|
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a------------------------~f~~p  138 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKC------------------------LFAMP  138 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTC------------------------EEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCe------------------------EEeCC
Confidence            112233444578889999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      |+++|++|++|++++|+|++|. +|++|++||+.++|+||+++||||+|+|+
T Consensus       139 e~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~  189 (363)
T 3bpt_A          139 ETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDS  189 (363)
T ss_dssp             GGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCSEECCG
T ss_pred             ccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCcceecCH
Confidence            9999999999999999999997 99999999999999999999999999987

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.1e-40  Score=336.99  Aligned_cols=259  Identities=25%  Similarity=0.379  Sum_probs=207.9

Q ss_pred             CCcceeEEEeCCEEEEEecCCC---------CCCCCCCHHHHHHHHHHHHHhhcC-CCccEEEEEee-CCCcEEcCCCcc
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPG---------VKVNSLNSEVMSEIQSILRRIQSD-SSIRSAVIISG-KPGCFIAGADIS  129 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~---------~~~Nal~~~~~~eL~~al~~~~~d-~~v~~vVl~~g-~g~~F~aG~Dl~  129 (366)
                      .++++.++++++|++|+||||+         .+.|++|.+|+.+|.++++.++.| ++||+||| +| .|+.||+|+||+
T Consensus        19 ~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVL-TGa~G~~FcAGaDL~   97 (556)
T 2w3p_A           19 QYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVL-TSLKDRVFCSGANIF   97 (556)
T ss_dssp             GCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEE-EESSSSEEECEECHH
T ss_pred             cCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEE-eCCCCCcccCCcCHH
Confidence            3567889999999999999996         258999999999999999999999 99997665 67 889999999999


Q ss_pred             hhhhcCCHHHHHHHHHHHHHHHHHH----HcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhh
Q psy9060         130 MLAACKTADQVKQISKSGQQILSEI----ESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYR  205 (366)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~  205 (366)
                      ++.... ......+.+.+++++..+    .++||||||+|||+|+|||++|+++||+|||+++.++              
T Consensus        98 el~~~~-~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A--------------  162 (556)
T 2w3p_A           98 MLGLST-HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSS--------------  162 (556)
T ss_dssp             HHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSC--------------
T ss_pred             HHhhcc-cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCc--------------
Confidence            987643 223334445667788888    9999999999999999999999999999999998223              


Q ss_pred             hhcccccccccccchh-ccCCCChhHHhHHh--hhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhh
Q psy9060         206 IVVKDKKTGLGLPEVM-LGLLPGAGGTQRLP--KLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERT  282 (366)
Q Consensus       206 ~~~~~~~~~~~~pe~~-~Gl~p~~gg~~~l~--r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~  282 (366)
                              +|++||++ +|++|++|++++|+  |++|..+|++|+++|+.++|+||+++||||+|+|+            
T Consensus       163 --------~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~------------  222 (556)
T 2w3p_A          163 --------SVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKP------------  222 (556)
T ss_dssp             --------EEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECH------------
T ss_pred             --------EEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh------------
Confidence                    99999999 99999999999999  99999999999999999999999999999999987            


Q ss_pred             HHHHHHHHHHHHHHHhcCcccccccCCCCcchhhhhh-----hhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHH
Q psy9060         283 MEYLEEVAVNTASQLASGKLKINRIKPMIPDKVLDVA-----LKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIF  357 (366)
Q Consensus       283 ~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~  357 (366)
                       +++.+.+.++|++|+..+....+.|.+. ...++..     ...... ...++.++..+..+.++..|+|.++++.|+.
T Consensus       223 -~eL~~~A~~lA~~LA~~~p~Av~~K~l~-~~~l~r~~~~~gl~y~~~-~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~a  299 (556)
T 2w3p_A          223 -NQFDQAIQARALELAAQSDRPAHAQGVP-LTRIERTDREDGLTYKTL-DVTIDRAKRIATFTAKAPQTEPPASIDAIVA  299 (556)
T ss_dssp             -HHHHHHHHHHHHHHHTTCCCCTTCCCCC-CCCCCCEEETTEEEETTE-EEEEETTTTEEEEEEECCSSCCCCSHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHcCChHHHhhhhhh-cchhhhhhhhccccHHHH-HHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Confidence             7899999999999998865433334432 1111000     000000 0112334555555678888999988888875


Q ss_pred             h
Q psy9060         358 F  358 (366)
Q Consensus       358 ~  358 (366)
                      -
T Consensus       300 a  300 (556)
T 2w3p_A          300 A  300 (556)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=5.7e-41  Score=335.31  Aligned_cols=221  Identities=21%  Similarity=0.333  Sum_probs=179.4

Q ss_pred             hhhcCChhhhhhhhhhhhhhhhcccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEE
Q psy9060          36 SQLAMTPQSKGLMGLFRAQTECKKNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVII  115 (366)
Q Consensus        36 a~L~~speskal~~~F~~~~~~kk~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~  115 (366)
                      +++..++.+.++..-|....   ...++.+.++++++|++|+||||+ +.|+||.+|+++|.++++.++.|++|++||| 
T Consensus       143 ~~~~p~~~~~~~lp~f~~~~---~~~~~~v~~e~~~gVa~ItLNRP~-k~NALs~~m~~eL~~al~~~~~D~~VRvVVL-  217 (440)
T 2np9_A          143 AMLRPTPRALELLPEFVRTG---EVEMEAVHLERRDGVARLTMCRDD-RLNAEDGQQVDDMETAVDLALLDPGVRVGLL-  217 (440)
T ss_dssp             HHHSCCHHHHHHHHHHHHHS---EEECSSEEEEEETTEEEEEECCTT-TTTCBCHHHHHHHHHHHHHHHHCTTCSEEEE-
T ss_pred             hhcCCCcchhhhChhhhhcc---cCCCceEEEEEECCEEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEE-
Confidence            44555555555444443222   223457889999999999999998 7999999999999999999999999997665 


Q ss_pred             eeC--------C-CcEEcCCCcchhhhcCC-H-HH-HHHHHHHHHHHHHHH------------HcCCCCEEEEeccccch
Q psy9060         116 SGK--------P-GCFIAGADISMLAACKT-A-DQ-VKQISKSGQQILSEI------------ESSPKPIVAAISGSCLG  171 (366)
Q Consensus       116 ~g~--------g-~~F~aG~Dl~~~~~~~~-~-~~-~~~~~~~~~~~~~~i------------~~~~kP~Iaav~G~a~G  171 (366)
                      +|.        | +.||+|+||+++..... . .. .......++.++..+            .++||||||+|||+|+|
T Consensus       218 tG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~G  297 (440)
T 2np9_A          218 RGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIG  297 (440)
T ss_dssp             EECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEET
T ss_pred             EcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccc
Confidence            663        5 79999999999864321 1 10 111112234555544            47999999999999999


Q ss_pred             hHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCC
Q psy9060         172 GGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGK  251 (366)
Q Consensus       172 gG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~  251 (366)
                      ||++|+++||+|||++++                        +|++||+++|++|++| +++|++++|..+|++|++||+
T Consensus       298 GG~eLALaCDirIAae~A------------------------~Fglpev~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~  352 (440)
T 2np9_A          298 GGAQLLLVFDRVLASSDA------------------------YFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGR  352 (440)
T ss_dssp             HHHHHGGGCSEEEEETTC------------------------EEECCCTTTCCCCTTH-HHHHHHHHHHHHHHHHHHHCC
T ss_pred             cchHHHhhCCEEEEcCCC------------------------EEECchhccCcCcchH-HHHHHHHhhHHHHHHHHHcCC
Confidence            999999999999999987                        9999999999999887 689999999999999999999


Q ss_pred             CcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         252 TLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       252 ~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      .|+|+||+++||||+|||+             +++.+.+.+++++++.
T Consensus       353 ~i~A~EA~~~GLV~~Vvp~-------------~eL~~~a~~~A~~la~  387 (440)
T 2np9_A          353 RIWAKEPEARLLVDEVVEP-------------DELDAAIERSLTRLDG  387 (440)
T ss_dssp             CEETTSGGGGGTCSEEECH-------------HHHHHHHHHHHHTTCS
T ss_pred             CCCHHHHHHCCCCcEecCh-------------HHHHHHHHHHHHHhCH
Confidence            9999999999999999987             6788888888887753

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=9e-41  Score=332.83  Aligned_cols=182  Identities=23%  Similarity=0.345  Sum_probs=164.5

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcC-----
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACK-----  135 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~-----  135 (366)
                      ++.+.++++++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++|| ++|.| ++||+|+||+++....     
T Consensus        41 ~~~v~~~~~~~V~~ItLnrP~-~~NAl~~~m~~~L~~al~~~~~d~~vr~vV-ltG~G~~~FcaG~Dl~~~~~~~~~~~~  118 (407)
T 3ju1_A           41 FQTLATASGKLVGVVTLNVEK-ALNALDLDMVRAMTVQLNLWKKDPLIACVV-LDGSGEKAFCAGGDVRALYHASVAAKG  118 (407)
T ss_dssp             EEEEECTTSCEEEEEEECCGG-GTSCBCHHHHHHHHHHHHHHHHCTTEEEEE-EEESSSSEEECCBCCHHHHHHHHHHTS
T ss_pred             cceEEEEEECCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEE-EecCCCCcccCCCChhhhhhccccccc
Confidence            456778888999999999998 789999999999999999999999999755 57877 7999999999886421     


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         136 -TADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       136 -~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                       .......+....+.++.+|.++||||||+|||+|+|||++|+++||+|||++++                        +
T Consensus       119 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a------------------------~  174 (407)
T 3ju1_A          119 QVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETS------------------------R  174 (407)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTC------------------------E
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCC------------------------E
Confidence             112344555666788999999999999999999999999999999999999987                        9


Q ss_pred             ccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      |++||+++|++|++|++++|+|++| .+|++|++||++++|+||+++||||+|||+
T Consensus       175 f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~  229 (407)
T 3ju1_A          175 IAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHYLNR  229 (407)
T ss_dssp             EECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCG
T ss_pred             EeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEEcCH
Confidence            9999999999999999999999999 999999999999999999999999999987

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.83  E-value=3.5e-21  Score=200.34  Aligned_cols=169  Identities=18%  Similarity=0.211  Sum_probs=136.3

Q ss_pred             eCCEEEEEecCCCCCCCC--CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNS--LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSG  147 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Na--l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~  147 (366)
                      +++|++|++|+|. ..|+  ++..+.++|.++|+.+.+|+++++||| ++.+    .|+|+...             ..+
T Consensus       300 ~~~VavI~l~g~i-~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL-~i~s----pGG~~~~~-------------~~i  360 (593)
T 3bf0_A          300 GDSIGVVFANGAI-MDGEETQGNVGGDTTAAQIRDARLDPKVKAIVL-RVNS----PGGSVTAS-------------EVI  360 (593)
T ss_dssp             SCEEEEEEEEEEE-ESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEE-EEEE----EEECHHHH-------------HHH
T ss_pred             CCCEEEEEEeeee-cCCccccchhHHHHHHHHHHHHHhCCCCCEEEE-EecC----CCCCHHHH-------------HHH
Confidence            4679999999997 5787  678889999999999999999998766 5542    46776431             123


Q ss_pred             HHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch-------
Q psy9060         148 QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV-------  220 (366)
Q Consensus       148 ~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~-------  220 (366)
                      .+.+.++..++||||++|+|.|.|||++|+++||+|||++++                        .||.+++       
T Consensus       361 ~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a------------------------~~Gsigv~~~~~~~  416 (593)
T 3bf0_A          361 RAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPST------------------------LTGSIGIFGVITTV  416 (593)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTC------------------------EEECCCEEEEEEEC
T ss_pred             HHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCC------------------------EeecceeEEecCch
Confidence            566778888999999999999999999999999999999987                        6666553       


Q ss_pred             -----hccCCCCh-------------hHH---------------hHHhhhcCHHH-----HHHHHhcCCCcCHHHHHHcC
Q psy9060         221 -----MLGLLPGA-------------GGT---------------QRLPKLTALPN-----VLDMTLTGKTLKADKAKKMG  262 (366)
Q Consensus       221 -----~~Gl~p~~-------------gg~---------------~~l~r~~G~~~-----a~~l~ltG~~~~a~eA~~~G  262 (366)
                           ++|+.|..             +.+               .++++.++..+     +.+++++|+.++++||+++|
T Consensus       417 ~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~G  496 (593)
T 3bf0_A          417 ENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANG  496 (593)
T ss_dssp             HHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHT
T ss_pred             HHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCC
Confidence                 68887532             222               56778888888     89999999999999999999


Q ss_pred             CcceecCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy9060         263 IVDQLVEPLGPGLNHPEERTMEYLEEVAVNTA  294 (366)
Q Consensus       263 LVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a  294 (366)
                      |||++++.             +++.+.+.+++
T Consensus       497 LVD~v~~~-------------~~~~~~a~~~a  515 (593)
T 3bf0_A          497 LVDSLGDF-------------DDAVAKAAELA  515 (593)
T ss_dssp             SCSEECCH-------------HHHHHHHHHHS
T ss_pred             CCcCccCH-------------HHHHHHHHHHc
Confidence            99999975             56666665544

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.80  E-value=4.3e-19  Score=164.86  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=116.8

Q ss_pred             eCCEEEEEecCCCCCCCC-----CC--HHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNS-----LN--SEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQ  142 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Na-----l~--~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~  142 (366)
                      +++|++|+++.+= ..+.     ++  .-..++|.++|+.+.+|++||+||| ++.    |.|+|+...           
T Consensus         2 ~~~iavi~i~G~I-~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL-~~~----s~Gg~~~~~-----------   64 (240)
T 3rst_A            2 SSKIAVLEVSGTI-QDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVL-KVN----SPGGGVYES-----------   64 (240)
T ss_dssp             CCEEEEEEEESCB-CCC---------CCCCHHHHHHHHHHHHHCTTEEEEEE-EEE----ECCBCHHHH-----------
T ss_pred             CCeEEEEEEEEEE-cCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEE-Eec----CCCCCHHHH-----------
Confidence            3678999888753 1111     10  0125799999999999999998766 443    578887532           


Q ss_pred             HHHHHHHHHHHHHc-CCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc---
Q psy9060         143 ISKSGQQILSEIES-SPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP---  218 (366)
Q Consensus       143 ~~~~~~~~~~~i~~-~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p---  218 (366)
                        ..+.+.+.++.. ++|||||+|+|.|.|||++|+++||+||+++++                        .|+++   
T Consensus        65 --~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a------------------------~~g~~Gv~  118 (240)
T 3rst_A           65 --AEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPET------------------------LTGSLGVI  118 (240)
T ss_dssp             --HHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTC------------------------EEECCCCE
T ss_pred             --HHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCC------------------------eEecccee
Confidence              223456667777 899999999999999999999999999999987                        55665   


Q ss_pred             ------------------chhccCCCChhH--------------------------HhHHhhhcCHHHHHHHHhcCCCcC
Q psy9060         219 ------------------EVMLGLLPGAGG--------------------------TQRLPKLTALPNVLDMTLTGKTLK  254 (366)
Q Consensus       219 ------------------e~~~Gl~p~~gg--------------------------~~~l~r~~G~~~a~~l~ltG~~~~  254 (366)
                                        +++.|..++.+.                          .....|.+......+ +++|+.++
T Consensus       119 ~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~  197 (240)
T 3rst_A          119 MESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYD  197 (240)
T ss_dssp             EEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEE
T ss_pred             eEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCccc
Confidence                              666777777652                          223345556555554 88999999


Q ss_pred             HHHHHHcCCcceecCC
Q psy9060         255 ADKAKKMGIVDQLVEP  270 (366)
Q Consensus       255 a~eA~~~GLVd~vv~~  270 (366)
                      +++|+++||||++.+.
T Consensus       198 a~~A~~~GLVD~i~~~  213 (240)
T 3rst_A          198 GRQAKKLNLVDELGFY  213 (240)
T ss_dssp             HHHHHHTTSSSEECCH
T ss_pred             HHHHHHcCCCcccCCH
Confidence            9999999999999975

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.77  E-value=4.6e-18  Score=156.61  Aligned_cols=147  Identities=16%  Similarity=0.276  Sum_probs=120.8

Q ss_pred             CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHH
Q psy9060          71 GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQI  150 (366)
Q Consensus        71 ~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  150 (366)
                      +.|++|+++      |+++..+.+.|.+.|+.++++ ++++||| ...    |.|+|+.                ....+
T Consensus         8 ~~V~vI~i~------g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl-~in----spGG~v~----------------~~~~i   59 (230)
T 3viv_A            8 NIVYVAQIK------GQITSYTYDQFDRYITIAEQD-NAEAIII-ELD----TPGGRAD----------------AMMNI   59 (230)
T ss_dssp             CEEEEEEEE------SCBCHHHHHHHHHHHHHHHHT-TCSEEEE-EEE----BSCEEHH----------------HHHHH
T ss_pred             CeEEEEEEe------CEECHHHHHHHHHHHHHHhcC-CCCEEEE-EEe----CCCcCHH----------------HHHHH
Confidence            569999997      468999999999999999864 5897666 432    5566643                23467


Q ss_pred             HHHHHcCCCCEEEEe---ccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCC
Q psy9060         151 LSEIESSPKPIVAAI---SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPG  227 (366)
Q Consensus       151 ~~~i~~~~kP~Iaav---~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~  227 (366)
                      +..|..++||||++|   +|.|.|+|+.|+++||+|++.+++                        +|+.+++..+. |+
T Consensus        60 ~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a------------------------~ig~~~p~~~~-~~  114 (230)
T 3viv_A           60 VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGT------------------------SIGACRPILGY-SQ  114 (230)
T ss_dssp             HHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTC------------------------EEECCCEEEEE-CT
T ss_pred             HHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCC------------------------EEEeccceecC-CC
Confidence            778889999999999   999999999999999999999987                        88988887533 44


Q ss_pred             hhHH---------------hHHhhhcCH--HHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         228 AGGT---------------QRLPKLTAL--PNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       228 ~gg~---------------~~l~r~~G~--~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      .|.+               ..+++..|.  .++.+++.+++.++|+||+++||||+|+++
T Consensus       115 ~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          115 NGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             TSCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            4442               246777885  789999999999999999999999999975

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.51  E-value=4.4e-14  Score=129.17  Aligned_cols=137  Identities=13%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+.+++.+.|..+++|++++.+++.-     .|-|+++.                ....+++.|..+++||++.++|
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-----nSPGG~v~----------------ag~~I~~~i~~~~~pV~t~v~G  112 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLYV-----NTPGGSVS----------------AGLAIVDTMNFIKADVQTIVMG  112 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEE-----EECCBCHH----------------HHHHHHHHHHHSSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-----ECcCCCHH----------------HHHHHHHHHHhcCCCEEEEEcc
Confidence            77889999999999999887778766642     23333321                1245667778889999999999


Q ss_pred             ccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhH---------------
Q psy9060         168 SCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGG---------------  230 (366)
Q Consensus       168 ~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg---------------  230 (366)
                      .|.++|+.|+++||.  |+|.+++                        .|++.+.. |..|..|.               
T Consensus       113 ~AaS~G~~Ia~a~d~g~r~a~p~a------------------------~igih~p~-~g~~~~G~~~di~~~~~~i~~~~  167 (218)
T 1y7o_A          113 MAASMGTVIASSGAKGKRFMLPNA------------------------EYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTR  167 (218)
T ss_dssp             EEETHHHHHHTTSCTTCEEECTTC------------------------EEECCCCC---------------CHHHHHHHH
T ss_pred             EeHHHHHHHHHcCCcCcEEEcCCc------------------------EEEEeccc-ccccCcCCHHHHHHHHHHHHHHH
Confidence            999999999999999  9999987                        78888876 43432333               


Q ss_pred             ---HhHHhhhcCH--HHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         231 ---TQRLPKLTAL--PNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       231 ---~~~l~r~~G~--~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                         ...+++..|.  .++.+++.+|+.++++||+++||||+|+++
T Consensus       168 ~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~  212 (218)
T 1y7o_A          168 NTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  212 (218)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCc
Confidence               2456777776  578889999999999999999999999986

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.50  E-value=7.2e-14  Score=133.71  Aligned_cols=158  Identities=13%  Similarity=0.145  Sum_probs=121.0

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |+++..|.-- ..|+++..+.+.+.++++.+.++ .+..|+ +++.|     |+|+.+...     ..    ..+..++.
T Consensus       120 V~v~a~d~~~-~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~-l~~sG-----Garlqeg~~-----~l----~~~~~i~~  182 (304)
T 2f9y_B          120 VVAAAFEFAF-MGGSMGSVVGARFVRAVEQALED-NCPLIC-FSASG-----GARMQEALM-----SL----MQMAKTSA  182 (304)
T ss_dssp             CBEEEECTTS-TTTCBCTHHHHHHHHHHHHHHHH-TCCEEE-EEEES-----SBCGGGTHH-----HH----HHHHHHHH
T ss_pred             EEEEEEcCcc-ccCCCCHHHHHHHHHHHHHHHhC-CCCEEE-EECCC-----CcCHHHHHH-----HH----HHHHHHHH
Confidence            4445555443 57999999999999999999988 788654 56654     888865321     11    22345555


Q ss_pred             HHH---cCCCCEEEEeccccchhH-HHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060         153 EIE---SSPKPIVAAISGSCLGGG-LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA  228 (366)
Q Consensus       153 ~i~---~~~kP~Iaav~G~a~GgG-~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~  228 (366)
                      .+.   ..++|+|++|+|.|+||| +.++++||++||.+++                        +|++.          
T Consensus       183 al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A------------------------~i~v~----------  228 (304)
T 2f9y_B          183 ALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKA------------------------LIGFA----------  228 (304)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTC------------------------BEESS----------
T ss_pred             HHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCc------------------------EEEee----------
Confidence            554   459999999999999999 7789999999999987                        66664          


Q ss_pred             hHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCc
Q psy9060         229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK  301 (366)
Q Consensus       229 gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~  301 (366)
                       |...+++.+|..      ++++..++++++++|+||.|+++             +++.+.+.+++..+...+
T Consensus       229 -Gp~~i~~~ig~~------l~~~~~~Ae~~~~~Glvd~Vv~~-------------~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          229 -GPRVIEQTVREK------LPPGFQRSEFLIEKGAIDMIVRR-------------PEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             -CHHHHHHHHTSC------CCTTTTBHHHHGGGTCCSEECCH-------------HHHHHHHHHHHHHHTTCC
T ss_pred             -cHHHHHHHhCcc------CCcccCCHHHHHhcCCccEEeCc-------------HHHHHHHHHHHHHhhcCC
Confidence             345666666643      56888999999999999999986             678888899999887653

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.39  E-value=3.2e-12  Score=123.42  Aligned_cols=137  Identities=15%  Similarity=0.197  Sum_probs=100.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      .+.++++..+...+.++.+.+.. +- +|.+...++++. |.+.          +.......+..++..+.++++|+|++
T Consensus       138 ~G~~~~~~~~Ka~r~~~~A~~~~-~P-lI~lvdt~Ga~~-g~~a----------e~~g~~~~~a~~l~al~~~~vPvIav  204 (327)
T 2f9i_A          138 FGMAHPEGYRKALRLMKQAEKFN-RP-IFTFIDTKGAYP-GKAA----------EERGQSESIATNLIEMASLKVPVIAI  204 (327)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHTT-CC-EEEEEEESCSCC-CHHH----------HHTTHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcC-CC-EEEEEeCCCCCc-chhh----------hhhhhHHHHHHHHHHHHhCCCCEEEE
Confidence            47899999999999999888764 34 344444333322 2211          11112345667788899999999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhh-hcCHHHH
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK-LTALPNV  243 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r-~~G~~~a  243 (366)
                      |+|.|.|||+.++++||++||.+++                        +|++       +++.|++..+.+ ..+...+
T Consensus       205 V~G~a~GGGa~~~~~~D~via~~~A------------------------~~~v-------~~peg~a~il~~~~~~a~~A  253 (327)
T 2f9i_A          205 VIGEGGSGGALGIGIANKVLMLENS------------------------TYSV-------ISPEGAAALLWKDSNLAKIA  253 (327)
T ss_dssp             EEEEEBHHHHHTTCCCSEEEEETTC------------------------BCBS-------SCHHHHHHHHSSCGGGHHHH
T ss_pred             EECCcChHHHHHHHCCCEEEEcCCc------------------------eEee-------cCchHHHHHHHHHhcchHHH
Confidence            9999999999999999999999987                        6664       333444445544 4445777


Q ss_pred             HHHHhcCCCcCHHHHHHcCCcceecC
Q psy9060         244 LDMTLTGKTLKADKAKKMGIVDQLVE  269 (366)
Q Consensus       244 ~~l~ltG~~~~a~eA~~~GLVd~vv~  269 (366)
                      .++    +.++|++|+++|+||+|++
T Consensus       254 ~e~----~~itA~~a~~~GlVd~VV~  275 (327)
T 2f9i_A          254 AET----MKITAHDIKQLGIIDDVIS  275 (327)
T ss_dssp             HHH----HTCBHHHHHHTTSSSEEEC
T ss_pred             HHH----cCCCHHHHHHcCCceEEec
Confidence            776    7799999999999999998

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.34  E-value=6.3e-12  Score=121.81  Aligned_cols=138  Identities=12%  Similarity=0.161  Sum_probs=105.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      .+.+++...+...+.++.+.+.. +- +|.+...++++. |.+.          +.......+..++..+.++++|+|++
T Consensus       152 ~G~~~~~~~~Ka~r~~~~A~~~~-lP-lI~lvDt~Ga~~-g~~a----------E~~g~~~~~a~~l~al~~~~vPvIav  218 (339)
T 2f9y_A          152 FGMPAPEGYRKALRLMQMAERFK-MP-IITFIDTPGAYP-GVGA----------EERGQSEAIARNLREMSRLGVPVVCT  218 (339)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHTT-CC-EEEEEEESCSCC-SHHH----------HHTTHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcC-CC-EEEEEeCCCCcc-chHH----------HHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999887654 34 344444333332 2211          11123345667788899999999999


Q ss_pred             eccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHH
Q psy9060         165 ISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVL  244 (366)
Q Consensus       165 v~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~  244 (366)
                      |+|.|.|||+.++++||++||.+++                        +|++      +.|.++++..+.+..+...|.
T Consensus       219 V~G~a~GGGa~~~~~~D~via~p~A------------------------~~~v------~~Peg~asil~~~~~~~~~Aa  268 (339)
T 2f9y_A          219 VIGEGGSGGALAIGVGDKVNMLQYS------------------------TYSV------ISPEGCASILWKSADKAPLAA  268 (339)
T ss_dssp             EEEEEEHHHHHTTCCCSEEEECTTC------------------------EEES------SCHHHHHHHHSSCSTTHHHHH
T ss_pred             EeCCcCcHHHHHHhccCeeeecCCC------------------------EEEe------eccchHHHHHHHhhccHHHHH
Confidence            9999999999999999999999987                        6665      345566666666677778888


Q ss_pred             HHHhcCCCcCHHHHHHcCCcceecC
Q psy9060         245 DMTLTGKTLKADKAKKMGIVDQLVE  269 (366)
Q Consensus       245 ~l~ltG~~~~a~eA~~~GLVd~vv~  269 (366)
                      ++    ..++|++|+++|+||+|++
T Consensus       269 e~----~~itA~~a~~~GlVd~VV~  289 (339)
T 2f9y_A          269 EA----MGIIRPRLKELKLIDSIIP  289 (339)
T ss_dssp             HH----HTCSHHHHHTTTSCSCCCC
T ss_pred             HH----cCCCHHHHHHcCCeeEEec
Confidence            77    6799999999999999998

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.07  E-value=2.7e-10  Score=103.22  Aligned_cols=134  Identities=16%  Similarity=0.248  Sum_probs=95.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+.+.+.+.|..+++++.++.+++.--++     |++.                .....+++.|..+++||++.+.|
T Consensus        36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSP-----GG~v----------------~a~~~I~~~i~~~~~pV~~~v~g   94 (208)
T 2cby_A           36 VNDEIANRLCAQILLLAAEDASKDISLYINSP-----GGSI----------------SAGMAIYDTMVLAPCDIATYAMG   94 (208)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCH----------------HHHHHHHHHHHHCSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEECC-----CCCH----------------HHHHHHHHHHHhcCCCEEEEECc
Confidence            56788999999999998777677665542222     1221                11346677788889999999999


Q ss_pred             ccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH--------------
Q psy9060         168 SCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT--------------  231 (366)
Q Consensus       168 ~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~--------------  231 (366)
                      .|.++|..++++||.  |++.+++                        .+++....-|    ..|.              
T Consensus        95 ~AaS~g~~Ia~agd~~~~~a~p~a------------------------~igih~p~~~----~~G~~~d~~~~~~~l~~~  146 (208)
T 2cby_A           95 MAASMGEFLLAAGTKGKRYALPHA------------------------RILMHQPLGG----VTGSAADIAIQAEQFAVI  146 (208)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTC------------------------EEECCCC--------------CHHHHHHHHHH
T ss_pred             EeHHHHHHHHhCCCcCCEEEcCCc------------------------EEEEeccccc----ccCCHHHHHHHHHHHHHH
Confidence            999999999999998  9999876                        5555443211    1121              


Q ss_pred             -----hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         232 -----QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       232 -----~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                           ..+.+..|  .....+++..|+.++++||+++||||++...
T Consensus       147 ~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~  192 (208)
T 2cby_A          147 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  192 (208)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCc
Confidence                 11223333  3445668889999999999999999999976

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.64  E-value=5.3e-08  Score=87.03  Aligned_cols=138  Identities=14%  Similarity=0.183  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+.+.+.+.|..++.++.++.++|.--+++     +++                .....+.+.|..+++|+++.+.|
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-----G~v----------------~a~~~I~~~i~~~~~pV~~~v~g   93 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEKDIYLYINSPG-----GVI----------------TAGMSIYDTMQFIKPDVSTICMG   93 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-----BCH----------------HHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC-----CCH----------------HHHHHHHHHHHhcCCCEEEEEee
Confidence            677888999999998887666776665432222     221                12245667777888999999999


Q ss_pred             ccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCC---CChhHH-----------
Q psy9060         168 SCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLL---PGAGGT-----------  231 (366)
Q Consensus       168 ~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~---p~~gg~-----------  231 (366)
                      .|.++|..++++||.  |++.+++                        .+++-....|..   .+..-.           
T Consensus        94 ~AaS~g~~Ia~ag~~~~r~a~p~s------------------------~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~  149 (193)
T 1yg6_A           94 QAASMGAFLLTAGAKGKRFCLPNS------------------------RVMIHQPLGGYQGQATDIEIHAREILKVKGRM  149 (193)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTC------------------------EEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHCCCcCcEEEecCc------------------------EEEEEeccccccCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999  9999887                        343322221110   000000           


Q ss_pred             -hHHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         232 -QRLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       232 -~~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                       ..+.+..|  .....+++-.+..++++||+++||||++..+
T Consensus       150 ~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          150 NELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             HHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHHHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecCC
Confidence             00111222  3344455545566799999999999999864

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.52  E-value=7.7e-07  Score=80.14  Aligned_cols=138  Identities=20%  Similarity=0.255  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+.+.+.+.|..++.++..+.+++.-.+++     +++                .....+.+.|...++||++.+.|
T Consensus        36 I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-----G~v----------------~~~~~I~~~i~~~~~~V~t~~~G   94 (203)
T 3qwd_A           36 IDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG-----GSV----------------TAGFAIYDTIQHIKPDVQTICIG   94 (203)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-----BCH----------------HHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC-----CCH----------------HHHHHHHHHHHHhcCCcEEEEee
Confidence            778889999999999987666665555322222     221                12345667777889999999999


Q ss_pred             ccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC---CCChhH------------
Q psy9060         168 SCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL---LPGAGG------------  230 (366)
Q Consensus       168 ~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl---~p~~gg------------  230 (366)
                      .|.++|..++++||  .|++.+++                        .+.+-...-|.   ..+.--            
T Consensus        95 ~AaSag~~i~~ag~~g~r~~~p~a------------------------~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~  150 (203)
T 3qwd_A           95 MAASMGSFLLAAGAKGKRFALPNA------------------------EVMIHQPLGGAQGQATEIEIAANHILKTREKL  150 (203)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTC------------------------EEECCCCSSSTTTTSCHHHHHHHHHTTHHHHH
T ss_pred             eehhHHHHHHHcCCcCeEEEcCCc------------------------eEEEecccccccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  69999887                        44443222111   000000            


Q ss_pred             HhHHhhhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         231 TQRLPKLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       231 ~~~l~r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ...+....  ......+++-...-++|+||++.||||+|+.+
T Consensus       151 ~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~  192 (203)
T 3qwd_A          151 NRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP  192 (203)
T ss_dssp             HHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCC
Confidence            00011112  23445566666777999999999999999976

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.51  E-value=5.6e-07  Score=81.78  Aligned_cols=137  Identities=16%  Similarity=0.155  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+.+.+.+.|..++.++. +.++|.--+++     +++                .....+.+.|...++|+++.+.|
T Consensus        48 I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG-----Gsv----------------~a~~~I~~~i~~~~~pV~t~v~g  105 (215)
T 2f6i_A           48 INKKTADELISQLLYLDNINH-NDIKIYINSPG-----GSI----------------NEGLAILDIFNYIKSDIQTISFG  105 (215)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC-----BCH----------------HHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC-----CCH----------------HHHHHHHHHHHhcCCCEEEEEee
Confidence            677788889888888876555 65555422222     211                12245667778888999999999


Q ss_pred             ccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC---CCChhH----Hh------
Q psy9060         168 SCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL---LPGAGG----TQ------  232 (366)
Q Consensus       168 ~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl---~p~~gg----~~------  232 (366)
                      .|.++|..++++||.  |++.+++                        .+++.....|.   ..+...    ..      
T Consensus       106 ~AAS~g~~Ia~agd~g~i~a~p~s------------------------~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i  161 (215)
T 2f6i_A          106 LVASMASVILASGKKGKRKSLPNC------------------------RIMIHQPLGNAFGHPQDIEIQTKEILYLKKLL  161 (215)
T ss_dssp             EECHHHHHHHHTSCTTCEEECTTC------------------------EEESSCTTCSCC--------CHHHHHHHHHHH
T ss_pred             EhHhHHHHHHHcCCcccEEEcCCC------------------------EEEEeccccccCCchHHHHHHHHHHHHHHHHH
Confidence            999999999999999  9999987                        44433322111   000000    00      


Q ss_pred             --HHhhh--cCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 --RLPKL--TALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 --~l~r~--~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                        .+.+.  .......+++-.+..++++||+++||||++.++
T Consensus       162 ~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          162 YHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCC
Confidence              01111  133444455555566799999999999999975

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.50  E-value=2.3e-06  Score=86.98  Aligned_cols=198  Identities=22%  Similarity=0.271  Sum_probs=133.2

Q ss_pred             eCCEEEEEecCCCC------------CCCCCCHHHHHHHHHHHHHhh-cCCCccEEEEEeeCCCcEEcCCCcchhhhcCC
Q psy9060          70 VGDVLVVTLDSPGV------------KVNSLNSEVMSEIQSILRRIQ-SDSSIRSAVIISGKPGCFIAGADISMLAACKT  136 (366)
Q Consensus        70 ~~~Va~Itlnrp~~------------~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~  136 (366)
                      ..+++.++...|..            +.+....+|-.||.+++-.+. ++.+|...++.|-+...-.-.+|-- +..+.+
T Consensus       275 a~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~~~~-~~~~~~  353 (556)
T 2w3p_A          275 AKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADAS-LMQHKD  353 (556)
T ss_dssp             TTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHHHHH-HHHTTT
T ss_pred             HHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhhHHH-HHhccc
Confidence            45788888887652            113333456688877766665 5677887666553322111111110 112334


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEe-ccccchhH-HHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccc
Q psy9060         137 ADQVKQISKSGQQILSEIESSPKPIVAAI-SGSCLGGG-LEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTG  214 (366)
Q Consensus       137 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav-~G~a~GgG-~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
                      .....+....+.+.+.++.-.+.-+++.| .|.|+.|- +||+++||..++-+-...                 .++...
T Consensus       354 ~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~-----------------~~~~~~  416 (556)
T 2w3p_A          354 HWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPAN-----------------EDEEPA  416 (556)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTC-----------------TTTSCC
T ss_pred             hHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCC-----------------CCCCce
Confidence            45566777788889999998999999999 79998775 599999999999752211                 123458


Q ss_pred             ccccchhccCCCChhHHhHHhhhc-CHHHHHHH--HhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHH
Q psy9060         215 LGLPEVMLGLLPGAGGTQRLPKLT-ALPNVLDM--TLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVA  290 (366)
Q Consensus       215 ~~~pe~~~Gl~p~~gg~~~l~r~~-G~~~a~~l--~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a  290 (366)
                      +.+.+.++|..|...|..||.++. |-....+-  ...|+++++++|.++|||+...++     -++++++.=.++++|
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  490 (556)
T 2w3p_A          417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDD-----IDWADEIRIALEERA  490 (556)
T ss_dssp             EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCT-----TTHHHHHHHHHHHHH
T ss_pred             eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCccc-----CChHHHHHHHHHHHh
Confidence            999999999999999988887654 54444332  236999999999999999988776     345555444444443

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.40  E-value=1.9e-06  Score=80.98  Aligned_cols=136  Identities=18%  Similarity=0.201  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEe-eCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIIS-GKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAIS  166 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~  166 (366)
                      ++..+.+.+...|..++.++..+.|+|.- ..|+..                      .....+++.|...++||++.+.
T Consensus        91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV----------------------~ag~aIyd~I~~~k~pV~t~v~  148 (277)
T 1tg6_A           91 IDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVV----------------------TAGLAIYDTMQYILNPICTWCV  148 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH----------------------HHHHHHHHHHHHSCSCEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCH----------------------HHHHHHHHHHHhcCCCEEEEEc
Confidence            67788888888888876644456665542 223221                      1224566777788899999999


Q ss_pred             cccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh-HHh-----------
Q psy9060         167 GSCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG-GTQ-----------  232 (366)
Q Consensus       167 G~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g-g~~-----------  232 (366)
                      |.|..+|..++++||.  |++.+++                        .+++-...-|. -|-- -..           
T Consensus       149 G~AASaG~~Ia~Agd~gkr~a~P~S------------------------~ImihqP~~g~-~G~a~Di~~~a~ei~~~~~  203 (277)
T 1tg6_A          149 GQAASMGSLLLAAGTPGMRHSLPNS------------------------RIMIHQPSGGA-RGQATDIAIQAEEIMKLKK  203 (277)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTC------------------------EEEECCCCCCC-CSSHHHHHHHHHHHHHHHH
T ss_pred             cEeHHHHHHHHHCCCcCCEEEecCC------------------------EEEEecccccc-cCcHHHHHHHHHHHHHHHH
Confidence            9999999999999998  9999876                        44443322121 1100 000           


Q ss_pred             ----HHhhhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 ----RLPKLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 ----~l~r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                          .+....  ......+++-.+..++++||+++||||+|...
T Consensus       204 ~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~  247 (277)
T 1tg6_A          204 QLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH  247 (277)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCc
Confidence                011111  23344555555667899999999999999975

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.29  E-value=2e-06  Score=77.32  Aligned_cols=135  Identities=16%  Similarity=0.239  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISG  167 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G  167 (366)
                      ++..+.+.+...|..++.++..+.+++.-.+++     +++                .....+.+.|...++|++..+.|
T Consensus        39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG-----G~v----------------~~~~~I~~~i~~~~~~v~t~~~G   97 (201)
T 3p2l_A           39 VNDHSANLVIAQLLFLESEDPDKDIYFYINSPG-----GMV----------------TAGMGVYDTMQFIKPDVSTICIG   97 (201)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-----BCH----------------HHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-----CCH----------------HHHHHHHHHHHHhCCCeEEEEcC
Confidence            678888999999998887665665555432222     221                12245677778889999999999


Q ss_pred             ccchhHHHHHhhccE--EEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh-------------
Q psy9060         168 SCLGGGLEVALACHY--RIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ-------------  232 (366)
Q Consensus       168 ~a~GgG~elalacD~--ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~-------------  232 (366)
                      .|.++|..+++++|.  |++.+++                        .+.+....-|.   .|-..             
T Consensus        98 ~AaS~g~~i~~ag~~g~r~~~p~a------------------------~imiH~p~~~~---~G~a~di~~~a~~l~~~~  150 (201)
T 3p2l_A           98 LAASMGSLLLAGGAKGKRYSLPSS------------------------QIMIHQPLGGF---RGQASDIEIHAKNILRIK  150 (201)
T ss_dssp             EEETHHHHHHHTSSTTCEEECTTC------------------------EEEECCCEEEE---EEEHHHHHHHHHHHHHHH
T ss_pred             EehhHHHHHHHcCccCCEEEcCCC------------------------eEEEecccccc---CCCHHHHHHHHHHHHHHH
Confidence            999999999999998  9999876                        44433322111   11000             


Q ss_pred             -----HHhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 -----RLPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 -----~l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                           .+.+..|  .....+++-...-++|+||+++||||+|+++
T Consensus       151 ~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          151 DRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCC
Confidence                 0111122  3344445544455799999999999999976

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.19  E-value=5.9e-07  Score=95.37  Aligned_cols=59  Identities=20%  Similarity=0.160  Sum_probs=55.0

Q ss_pred             CCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060           2 SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN   60 (366)
Q Consensus         2 ~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~   60 (366)
                      +.++||||.+|+++|+++.+.++++||..|+++|.+|.+|++++++++.||.++..++.
T Consensus       242 ~~~~~~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~  300 (742)
T 3zwc_A          242 QYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKW  300 (742)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSC
T ss_pred             hccchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence            35689999999999999999999999999999999999999999999999999887653

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.94  E-value=6e-05  Score=78.17  Aligned_cols=82  Identities=20%  Similarity=0.159  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccch
Q psy9060          92 VMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLG  171 (366)
Q Consensus        92 ~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~G  171 (366)
                      ...++.+.|+.+.+|+.++++++.-..+    .|+++..         .    ..+.+.+..+....|||||.+++ +..
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~insp----GgG~v~~---------~----~~I~~~i~~~k~~gkpvva~~~~-aas  132 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLKNF----AGGDQPS---------M----QYIGKALKEFRDSGKPVYAVGEN-YSQ  132 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECTEE----EECCHHH---------H----HHHHHHHHHHHHTTCCEEEEESC-EEH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeCCC----CCCcHHH---------H----HHHHHHHHHHHhcCCeEEEEEcc-chh
Confidence            3577888999999999999877643211    1133211         1    22345556666667999999876 677


Q ss_pred             hHHHHHhhccEEEEecCCcc
Q psy9060         172 GGLEVALACHYRIAVKDKKT  191 (366)
Q Consensus       172 gG~elalacD~ria~~~ak~  191 (366)
                      +|+.|+.+||.+++.+.+..
T Consensus       133 ~~y~lAsaad~i~~~P~~~v  152 (593)
T 3bf0_A          133 GQYYLASFANKIWLSPQGVV  152 (593)
T ss_dssp             HHHHHHTTSSEEEECTTCCE
T ss_pred             HHHHHHHhCCEEEECCCceE
Confidence            88999999999999998743

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.77  E-value=0.00011  Score=75.82  Aligned_cols=153  Identities=12%  Similarity=0.130  Sum_probs=98.2

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-CCHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-KTADQVKQISKSGQQIL  151 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~~~~~~~~~~~~~~~~~  151 (366)
                      |.++-.|.-- ...++.....+.+..+++.+.+.. +- +|.+..     |+|+.+.+-... .+..   .+.+ +..-+
T Consensus       107 v~v~a~D~t~-~gGs~g~~~~~Ki~r~~e~A~~~~-lP-vI~l~d-----SgGArlqe~~~~l~~~~---~~g~-i~~~~  174 (587)
T 1pix_A          107 CVVVASDNKK-LAGAWVPGQAECLLRASDTAKTLH-VP-LVYVLN-----CSGVKFDEQEKVYPNRR---GGGT-PFFRN  174 (587)
T ss_dssp             EEEEEECTTT-TTTEECTTHHHHHHHHHHHHHHHT-CC-EEEEEC-----CCEECGGGHHHHSSSTT---STTH-HHHHH
T ss_pred             EEEEEECCcc-ccCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEe-----CCCCCccccchhccccc---cHHH-HHHHH
Confidence            4444444433 456788888899999999888754 34 344444     345555432110 0000   0011 12234


Q ss_pred             HHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC-CccCCCchhhhhhhhhhhhcccccccccc--cchhccCCCCh
Q psy9060         152 SEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD-KKTGLGLPEVALACHYRIVVKDKKTGLGL--PEVMLGLLPGA  228 (366)
Q Consensus       152 ~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~~--pe~~~Gl~p~~  228 (366)
                      .++....+|+|++|.|.|.|||... ..||++|+++. +                        .+++  |++--++-|  
T Consensus       175 ~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a------------------------~i~~~GP~vi~~~~~--  227 (587)
T 1pix_A          175 AELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKA------------------------NMAVGGAGIMGGMNP--  227 (587)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTC------------------------EEESCCCTTCCSCCS--
T ss_pred             HHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCc------------------------EEEecCHHHHhhhcc--
Confidence            5566778999999999999999999 88999988875 4                        4443  322111111  


Q ss_pred             hHHhHHhhhcCHHHHHHHH-hcCCCcCHHH-------HHHcCCcceecCC
Q psy9060         229 GGTQRLPKLTALPNVLDMT-LTGKTLKADK-------AKKMGIVDQLVEP  270 (366)
Q Consensus       229 gg~~~l~r~~G~~~a~~l~-ltG~~~~a~e-------A~~~GLVd~vv~~  270 (366)
                            .-.+|..+|.+++ .+|+.+++++       +.+.|++|.++++
T Consensus       228 ------~~~~d~~~A~el~~~tge~v~~e~lgga~~h~~~~GvvD~vv~~  271 (587)
T 1pix_A          228 ------KGHVDLEYANEIADMVDRTGKTEPPGAVDIHYTETGFMREVYAS  271 (587)
T ss_dssp             ------SSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEESS
T ss_pred             ------ccccchhHHHHHHHHhCCccChhhcccHHHHHhhcCceeEecCC
Confidence                  1137889999999 8999887665       2369999999987

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.73  E-value=0.00017  Score=64.84  Aligned_cols=143  Identities=16%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCccEE-EEEeeCCCc----EEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEE
Q psy9060          88 LNSEVMSEIQSILRRIQSDSSIRSA-VIISGKPGC----FIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIV  162 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d~~v~~v-Vl~~g~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~I  162 (366)
                      ++.++...+...|..++.++..+-+ |.+...|..    ...-+|                ...+..++..|...+.||.
T Consensus        37 I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~----------------v~aglaIyd~m~~~~~~V~  100 (205)
T 4gm2_A           37 IYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNG----------------ITDVISIVDVINYISSDVY  100 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTH----------------HHHHHHHHHHHHHSSSCEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCC----------------HHHHHHHHHHHHhcCCCEE
Confidence            7788888998888888743322322 333333311    000011                1234567778888899999


Q ss_pred             EEeccccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccC----CCChhHH----h
Q psy9060         163 AAISGSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGL----LPGAGGT----Q  232 (366)
Q Consensus       163 aav~G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl----~p~~gg~----~  232 (366)
                      ..+-|.|.+.|.-|++++|  .|++.+++                        ++.+-...-|.    ..+.--.    .
T Consensus       101 t~~~G~AaS~as~il~aG~~gkR~~lP~a------------------------~iMIHqP~~~~~~G~a~di~i~a~el~  156 (205)
T 4gm2_A          101 TYCLGKAYGIACILASSGKKGYRFSLKNS------------------------SFCLNQSYSIIPFNQATNIEIQNKEIM  156 (205)
T ss_dssp             EEEEEEEETHHHHHHTTSCTTCEEECTTC------------------------EEEECCCCCCCCSSCCSCHHHHHHHHH
T ss_pred             EEEEeeehhHHHHHHhcCCCCCEEecCCC------------------------EEEEecCcccccccCHHHHHHHHHHHH
Confidence            9999999999999999998  59999887                        33332222221    1111000    0


Q ss_pred             --------HHhhhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 --------RLPKLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 --------~l~r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                              .+.+..  ......+++-...-++|+||+++||||+|++.
T Consensus       157 ~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          157 NTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence                    111111  23334455556667999999999999999874

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.67  E-value=1.6e-05  Score=84.34  Aligned_cols=59  Identities=37%  Similarity=0.615  Sum_probs=55.4

Q ss_pred             CCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060           2 SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN   60 (366)
Q Consensus         2 ~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~   60 (366)
                      ++||||||..++++++.+...++++++..|++.|.++..|++++++++.|+.++..++.
T Consensus       245 ~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~  303 (715)
T 1wdk_A          245 AGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKK  303 (715)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhcc
Confidence            57899999999999999999999999999999999999999999999999998877654

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.38  E-value=0.0076  Score=61.35  Aligned_cols=137  Identities=22%  Similarity=0.249  Sum_probs=87.6

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++..|.-- ..-++.....+.+..+++.+.+.. +- +|.+..+     .|+.+.+     .-.....+.+.+.... 
T Consensus       107 v~v~a~D~t~-~gGS~g~~~~~Ki~ra~e~A~~~~-lP-vI~l~dS-----GGARmqe-----g~~sl~~~~~i~~~~~-  172 (531)
T 3n6r_B          107 VYVFSQDFTV-LGGSVSETHSKKICKIMDMAMQNG-AP-VIGINDS-----GGARIQE-----GVDSLAGYGEVFQRNI-  172 (531)
T ss_dssp             EEEEEECTTS-GGGCBCHHHHHHHHHHHHHHHHHT-CC-EEEEECC-----CCBCGGG-----THHHHHHHHHHHHHHH-
T ss_pred             EEEEEECCCc-ccccccHHHHHHHHHHHHHHHHcC-CC-EEEEeCC-----CccccCc-----ccchhhhHHHHHHHHH-
Confidence            3444444333 567899999999999999887654 34 3444443     4444433     1111222222222211 


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC-CccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD-KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT  231 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~  231 (366)
                      ++ .-..|+|++|.|+|.|||......||++|+.++ +                        .+++              
T Consensus       173 ~~-s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a------------------------~i~~--------------  213 (531)
T 3n6r_B          173 MA-SGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSS------------------------YMFV--------------  213 (531)
T ss_dssp             HT-TTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTC------------------------BCBS--------------
T ss_pred             HH-hCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCc------------------------eEee--------------
Confidence            11 235799999999999999988888999999986 4                        3333              


Q ss_pred             hHHhhhcCHHHHHHHHhcCCCcCHHHH-------HHcCCcceecCC
Q psy9060         232 QRLPKLTALPNVLDMTLTGKTLKADKA-------KKMGIVDQLVEP  270 (366)
Q Consensus       232 ~~l~r~~G~~~a~~l~ltG~~~~a~eA-------~~~GLVd~vv~~  270 (366)
                            .|+....  ..+|+.+++++.       .+.|++|.++++
T Consensus       214 ------aGP~vI~--~~~ge~v~~E~LGGa~~h~~~sG~~d~v~~~  251 (531)
T 3n6r_B          214 ------TGPDVVK--TVTNEQVSAEELGGATTHTRKSSVADAAFEN  251 (531)
T ss_dssp             ------SCHHHHH--HHHCCCCCHHHHHBHHHHHHTTSCCSEEESS
T ss_pred             ------cCHHHHH--HHhCCccChhhcchHHHHhhccCcceEEeCC
Confidence                  1211111  256899999998       899999999986

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.32  E-value=0.0061  Score=62.05  Aligned_cols=135  Identities=16%  Similarity=0.228  Sum_probs=86.9

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++..|.- -..-++.....+.+..+++.+.+.. +-. |.+..+|     |+.+.+     .......+    ..++.
T Consensus        99 v~v~a~D~t-v~gGS~g~~~~~Ki~ra~e~A~~~~-lP~-I~l~dSg-----GaRmqE-----g~~~l~~~----~~i~~  161 (530)
T 3iav_A           99 VAVFSQDFT-VFGGALGEVYGQKIVKVMDFALKTG-CPV-VGINDSG-----GARIQE-----GVASLGAY----GEIFR  161 (530)
T ss_dssp             EEEEEECTT-SGGGCBCHHHHHHHHHHHHHHHHHT-CCE-EEEECCC-----SBCGGG-----THHHHHHH----HHHHH
T ss_pred             EEEEEECCC-cceEeccHHHHHHHHHHHHHHHHcC-CCE-EEEEcCC-----Ccchhh-----hhhhHHHH----HHHHH
Confidence            333344433 3668899999999999999888753 443 4444433     444432     11122222    23333


Q ss_pred             HHHcC--CCCEEEEeccccchhHHHHHhhccEEEEecC-CccCCCchhhhhhhhhhhhcccccccccccchhccCCCChh
Q psy9060         153 EIESS--PKPIVAAISGSCLGGGLEVALACHYRIAVKD-KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAG  229 (366)
Q Consensus       153 ~i~~~--~kP~Iaav~G~a~GgG~elalacD~ria~~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~g  229 (366)
                      ++.++  -+|.|++|.|+|.|||......||++|++++ +                        .+++.           
T Consensus       162 ~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a------------------------~i~~a-----------  206 (530)
T 3iav_A          162 RNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTS------------------------HMFIT-----------  206 (530)
T ss_dssp             HHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTC------------------------EEESS-----------
T ss_pred             HHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCc------------------------EEEec-----------
Confidence            33322  3899999999999999988889999999986 4                        44431           


Q ss_pred             HHhHHhhhcCHHHHHHHHhcCCCcCHHHH-------HHcCCcceecCC
Q psy9060         230 GTQRLPKLTALPNVLDMTLTGKTLKADKA-------KKMGIVDQLVEP  270 (366)
Q Consensus       230 g~~~l~r~~G~~~a~~l~ltG~~~~a~eA-------~~~GLVd~vv~~  270 (366)
                               |+....  ..+|+.+++++.       ...|++|.++++
T Consensus       207 ---------GP~vi~--~~~ge~v~~e~LGGa~~h~~~sGv~d~va~d  243 (530)
T 3iav_A          207 ---------GPDVIK--TVTGEDVGFEELGGARTHNSTSGVAHHMAGD  243 (530)
T ss_dssp             ---------CHHHHH--HHHCCCCCHHHHHBHHHHHHTSCCCSEEESS
T ss_pred             ---------CHHHHH--HHhCCcCChhhcchHHHHHhccCceeEEecC
Confidence                     221111  256888888775       689999999987

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.28  E-value=0.0087  Score=56.27  Aligned_cols=104  Identities=13%  Similarity=0.137  Sum_probs=67.3

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |+++..| +.-....++....+.+.++++.+.+.. +- +|.+...|++     -..+  .   -....++ ......+.
T Consensus       123 V~v~a~d-~~~~gGs~g~~~~~K~~r~ie~A~~~~-lP-lI~l~dsgGa-----r~qE--G---i~sl~q~-aki~~~l~  188 (285)
T 2f9i_B          123 FGVAVMD-SRFRMGSMGSVIGEKICRIIDYCTENR-LP-FILFSASGGA-----RMQE--G---IISLMQM-GKTSVSLK  188 (285)
T ss_dssp             EEEEEEC-TTTGGGCCCHHHHHHHHHHHHHHHHTT-CC-EEEEEEECSC-----CGGG--H---HHHHHHH-HHHHHHHH
T ss_pred             EEEEEEc-cccccCcCCHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCc-----chhh--h---hhhHhHH-HHHHHHHH
Confidence            4444443 332457899999999999999888754 44 3444444432     2211  0   0111111 22334556


Q ss_pred             HHHcCCCCEEEEeccccchhHHHH-HhhccEEEEecCCc
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEV-ALACHYRIAVKDKK  190 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~el-alacD~ria~~~ak  190 (366)
                      ++.....|.|+.|.|.|.||+... ++.+|+++|.+++.
T Consensus       189 ~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~  227 (285)
T 2f9i_B          189 RHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKAL  227 (285)
T ss_dssp             HHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCB
T ss_pred             HHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcE
Confidence            666788999999999999998655 78899999998873

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=97.26  E-value=0.00019  Score=76.16  Aligned_cols=59  Identities=37%  Similarity=0.495  Sum_probs=54.8

Q ss_pred             CCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhcccC
Q psy9060           2 SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKNS   61 (366)
Q Consensus         2 ~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~~   61 (366)
                      +++ ||||..++++++++...++++++..|++.|.++..|+++++.++.|+..+..++..
T Consensus       242 ~~g-~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~  300 (725)
T 2wtb_A          242 APN-MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVP  300 (725)
T ss_dssp             CTT-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCT
T ss_pred             ccC-CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccC
Confidence            455 99999999999999999999999999999999999999999999999998887654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.24  E-value=0.014  Score=59.37  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++-.|--- ...++.....+.+..+++.+.+.. +-. |.+..     |+|+.+.+-     .....++.+.+.... 
T Consensus        97 v~v~a~D~t~-~gGS~g~~~~~Ki~ra~e~A~~~~-lP~-I~l~~-----SGGARmqeg-----~~sl~~~~~i~~~~~-  162 (523)
T 1on3_A           97 VHAASQDFTV-MGGSAGETQSTKVVETMEQALLTG-TPF-LFFYD-----SGGARIQEG-----IDSLSGYGKMFFANV-  162 (523)
T ss_dssp             EEEEEECTTT-GGGCBCHHHHHHHHHHHHHHHHHT-CCE-EEEEE-----ECSBCGGGT-----HHHHHHHHHHHHHHH-
T ss_pred             EEEEEEcCCc-cCCcCcHHHHHHHHHHHHHHHHcC-CCE-EEEEc-----CCCCChhhH-----HHHHHHHHHHHHHHH-
Confidence            4444444433 567899999999999999888754 443 44444     556666432     112223333222222 


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                      .+ .-..|.|++|.|+|.||+......||++|+.+++
T Consensus       163 ~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a  198 (523)
T 1on3_A          163 KL-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKA  198 (523)
T ss_dssp             HH-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTC
T ss_pred             Hh-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCC
Confidence            22 3348999999999999999998999999999876

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.10  E-value=0.0048  Score=62.80  Aligned_cols=103  Identities=18%  Similarity=0.289  Sum_probs=69.7

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |+++-. ++......++.+..+.+.+.++.+.+. .+- +|.+...++ |..|.+          .+.....+.+..++.
T Consensus       327 V~via~-d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~P-lv~l~ds~G-~~~G~~----------~E~~G~~~~~Ak~l~  392 (522)
T 1x0u_A          327 VGIVAN-NPEEFGGSIDIDAADKAARFIRFCDAF-NIP-LISLVDTPG-YVPGTD----------QEYKGIIRHGAKMLY  392 (522)
T ss_dssp             EEEEEE-CTTTGGGCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEECC-BCCSHH----------HHHTTHHHHHHHHHH
T ss_pred             EEEEEE-CCCccCCCcCHHHHHHHHHHHHHHhhC-CCC-EEEEecCCC-CCCchH----------HHHHHHHHHHHHHHH
Confidence            444443 343234679999999999999988754 344 344444443 433322          111223345566788


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhh----ccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALA----CHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elala----cD~ria~~~a  189 (366)
                      .+.+...|.|+.|-|.|.|||......    +|+++|.+++
T Consensus       393 ~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A  433 (522)
T 1x0u_A          393 AFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTA  433 (522)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTC
T ss_pred             HHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCC
Confidence            888999999999999999998765544    9999999877

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.03  E-value=0.019  Score=58.69  Aligned_cols=141  Identities=17%  Similarity=0.220  Sum_probs=87.9

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-HHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-ADQVKQISKSGQQIL  151 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~  151 (366)
                      |.++..|.-- ...++.....+.+..+++.+.+.. +- +|.+..+|++.     +.+-..... .....    .+..-+
T Consensus       123 v~V~a~D~tv-~gGS~g~~~~~Ki~ra~e~A~~~~-lP-vI~l~dSgGAR-----l~~q~~~~~~~~~~~----~i~~~~  190 (555)
T 3u9r_B          123 CMIVGNDATV-KGGTYYPLTVKKHLRAQAIALENR-LP-CIYLVDSGGAN-----LPRQDEVFPDREHFG----RIFFNQ  190 (555)
T ss_dssp             EEEEEECTTT-GGGCBCHHHHHHHHHHHHHHHHHT-CC-EEEEECCCCBC-----GGGGGGTSSSTTSTT----HHHHHH
T ss_pred             EEEEEECCcc-ccCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEECCCCCC-----CCCcceeecccccHH----HHHHHH
Confidence            4444444333 567889999999999999988753 34 34444444443     211111000 00000    111222


Q ss_pred             HHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH
Q psy9060         152 SEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT  231 (366)
Q Consensus       152 ~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~  231 (366)
                      ..+.....|+|++|.|.|.|||......||++|+.+.. +                      .+++          +   
T Consensus       191 ~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~-a----------------------~i~~----------a---  234 (555)
T 3u9r_B          191 ANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQ-A----------------------TIFL----------A---  234 (555)
T ss_dssp             HHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTT-C----------------------BCBS----------S---
T ss_pred             HHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCC-c----------------------eEEE----------c---
Confidence            34445678999999999999999999999999888753 1                      3332          1   


Q ss_pred             hHHhhhcCHHHHHHHHhcCCCcCHHHH-------HHcCCcceecCC
Q psy9060         232 QRLPKLTALPNVLDMTLTGKTLKADKA-------KKMGIVDQLVEP  270 (366)
Q Consensus       232 ~~l~r~~G~~~a~~l~ltG~~~~a~eA-------~~~GLVd~vv~~  270 (366)
                             |+...  -..+|+.+++++.       .+.|++|.++++
T Consensus       235 -------GP~vi--k~~~ge~~~~e~LGGa~~h~~~sGv~d~v~~d  271 (555)
T 3u9r_B          235 -------GPPLV--KAATGEVVSAEELGGADVHCKVSGVADHYAED  271 (555)
T ss_dssp             -------CHHHH--HHHHCCCCCHHHHHBHHHHHHTTCSCSEEESS
T ss_pred             -------cHHHH--HHHhcCccChhhccchhhhhhccCceeEEeCC
Confidence                   11111  1257899999888       789999999986

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.03  E-value=0.029  Score=57.39  Aligned_cols=99  Identities=19%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++-.|--- ...++.....+.+..+++.+.+.. +-. |.+..     |.|+.+.+-.     ....++.    .++.
T Consensus       110 v~v~a~D~t~-~gGS~g~~~~~Ki~ra~e~A~~~~-lP~-I~l~d-----SGGARmqeg~-----~sl~~~~----~i~~  172 (548)
T 2bzr_A          110 VCIFSQDATV-FGGSLGEVYGEKIVKVQELAIKTG-RPL-IGIND-----GAGARIQEGV-----VSLGLYS----RIFR  172 (548)
T ss_dssp             EEEEEECTTS-GGGCCCHHHHHHHHHHHHHHHHHT-CCE-EEEEC-----CCSCCGGGTT-----HHHHHHH----HHHH
T ss_pred             EEEEEEcCcc-ccCCCChhHHHHHHHHHHHHHHcC-CCE-EEEEc-----CCCCCchhHH-----HHHHHHH----HHHH
Confidence            3444444332 567899999999999999988754 443 44444     4566654321     1122232    2333


Q ss_pred             HHHc--CCCCEEEEeccccchhHHHHHhhccEEEEecC
Q psy9060         153 EIES--SPKPIVAAISGSCLGGGLEVALACHYRIAVKD  188 (366)
Q Consensus       153 ~i~~--~~kP~Iaav~G~a~GgG~elalacD~ria~~~  188 (366)
                      ++..  -..|.|++|.|+|.||+......||++|+.++
T Consensus       173 ~~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~  210 (548)
T 2bzr_A          173 NNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ  210 (548)
T ss_dssp             HHHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETT
T ss_pred             HHHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccC
Confidence            3333  34899999999999999988889999999986

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.83  E-value=0.035  Score=56.49  Aligned_cols=101  Identities=18%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++-.|--- ...++....-+.+..+++.+.+.. +-. |.+..     |+|+.+.+-     .....++.+.+.... 
T Consensus        93 v~v~a~D~t~-~gGS~g~~~~~Ki~ra~e~A~~~~-~P~-I~l~~-----SGGaRmqeg-----~~sl~~~~~i~~~~~-  158 (522)
T 1x0u_A           93 VFAYAQDFTV-LGGSLGETHANKIVRAYELALKVG-APV-VGIND-----SGGARIQEG-----ALSLEGYGAVFKMNV-  158 (522)
T ss_dssp             EEEEEECTTT-GGGCBCHHHHHHHHHHHHHHHHHT-CCE-EEEEC-----CCSBCGGGT-----HHHHHHHHHHHHHHH-
T ss_pred             EEEEEecCce-eCccccHHHHHHHHHHHHHHHHcC-CCE-EEEEc-----CCCCChhHH-----HHHHHHHHHHHHHHH-
Confidence            4444444332 567899999999999999888754 443 44444     455555431     112223333222222 


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD  188 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~  188 (366)
                      .+ .-..|.|++|.|+|.||+......||++|+.++
T Consensus       159 ~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~  193 (522)
T 1x0u_A          159 MA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKG  193 (522)
T ss_dssp             HH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECS
T ss_pred             Hh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecC
Confidence            22 345899999999999999999889999999987

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.82  E-value=0.053  Score=55.22  Aligned_cols=101  Identities=21%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++-.|.-- ...++.....+.+..+++.+.+.. +-. |.+..+     .|+.+.+-     ......+.+.+.... 
T Consensus       100 v~v~a~D~t~-~gGS~g~~~~~Ki~r~~e~A~~~~-lPv-I~l~dS-----gGAR~qeg-----~~~l~g~~~~~~~~~-  165 (527)
T 1vrg_A          100 VAVFSQDFTV-MGGSLGEMHAKKIVKLLDLALKMG-IPV-IGINDS-----GGARIQEG-----VDALAGYGEIFLRNT-  165 (527)
T ss_dssp             EEEEEECTTT-GGGCBCHHHHHHHHHHHHHHHHHT-CCE-EEEEEE-----CSBCGGGT-----HHHHHHHHHHHHHHH-
T ss_pred             EEEEEEeccc-cCccccHHHHHHHHHHHHHHHHcC-CCE-EEEECC-----CCCCccch-----hHHHHHHHHHHHHHH-
Confidence            4444544322 567899999999999999887653 333 444443     34444321     111123333333322 


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD  188 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~  188 (366)
                       ......|+|++|.|+|.|||......||++|+.++
T Consensus       166 -~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~  200 (527)
T 1vrg_A          166 -LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQ  200 (527)
T ss_dssp             -HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETT
T ss_pred             -HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecC
Confidence             22456899999999999999988889999999987

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.65  E-value=0.036  Score=56.46  Aligned_cols=149  Identities=15%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcC
Q psy9060          78 LDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESS  157 (366)
Q Consensus        78 lnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (366)
                      -|+|......++.+-.....+.++.+++. .+- +|.+...+ .|..|.+          .+.....+.+..++..+.+.
T Consensus       336 a~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~P-lv~lvDtp-G~~~G~~----------~E~~g~~~~~A~~~~a~~~~  402 (527)
T 1vrg_A          336 ANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIP-ILTFVDTP-GYLPGVA----------QEHGGIIRHGAKLLYAYSEA  402 (527)
T ss_dssp             EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEEC-CBCCCHH----------HHHTTHHHHHHHHHHHHHHC
T ss_pred             EEcCcccCCCCCHHHHHHHHHHHHHHhhc-CCC-eEEEecCC-CCcCchh----------hHHhHHHHHHHHHHHHHhcC
Confidence            34443234579999999999999887643 344 34444433 3544433          22223445666788888899


Q ss_pred             CCCEEEEeccccchhHHHHHhh----ccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhH
Q psy9060         158 PKPIVAAISGSCLGGGLEVALA----CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR  233 (366)
Q Consensus       158 ~kP~Iaav~G~a~GgG~elala----cD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~  233 (366)
                      ..|+|+.|-|.|.|||+.-...    .|+++|.+++                               .++++++-|....
T Consensus       403 ~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a-------------------------------~~~Vm~pegaa~I  451 (527)
T 1vrg_A          403 TVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSA-------------------------------EIAVMGPEGAANI  451 (527)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTC-------------------------------EEESSCHHHHHHH
T ss_pred             CCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCC-------------------------------eEEecCHHHHHHH
Confidence            9999999999999888754433    7777777665                               4455555555444


Q ss_pred             Hhhhc-----CHHHHHH-HHh--cCCCcCHHHHHHcCCcceecCC
Q psy9060         234 LPKLT-----ALPNVLD-MTL--TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       234 l~r~~-----G~~~a~~-l~l--tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +-+.-     .....++ +.-  .-+.-++..+.+.|+||+|+++
T Consensus       452 l~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~p  496 (527)
T 1vrg_A          452 IFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDP  496 (527)
T ss_dssp             HTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCG
T ss_pred             HhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeCH
Confidence            43321     1111111 221  1113567889999999999987

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.51  E-value=0.04  Score=56.09  Aligned_cols=150  Identities=15%  Similarity=0.204  Sum_probs=93.8

Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy9060          77 TLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIES  156 (366)
Q Consensus        77 tlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (366)
                      .-|+|......++.+-.+...+.++.++.. .+- +|.+...+ .|..|.+          .+.....+.+..++..+.+
T Consensus       331 ian~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iP-lv~lvDtp-Gf~~G~~----------~E~~Gi~~~~A~~l~a~a~  397 (523)
T 1on3_A          331 VANQPSVMSGCLDINASDKAAEFVNFCDSF-NIP-LVQLVDVP-GFLPGVQ----------QEYGGIIRHGAKMLYAYSE  397 (523)
T ss_dssp             EEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEEC-CBCCCHH----------HHHTTHHHHHHHHHHHHHH
T ss_pred             EEecCCccCCCCCHHHHHHHHHHHHHHHhc-CCC-eEEEEeCC-CcCcchH----------HHHhhHHHHHHHHHHHHhc
Confidence            334444234579999999999998877643 344 34444443 3555543          2223345667788888899


Q ss_pred             CCCCEEEEeccccchhHHHHHhh----ccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh
Q psy9060         157 SPKPIVAAISGSCLGGGLEVALA----CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ  232 (366)
Q Consensus       157 ~~kP~Iaav~G~a~GgG~elala----cD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~  232 (366)
                      ...|+|+.|-|.+.|||+.-...    .|+++|.+++                               .++++++-|...
T Consensus       398 ~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a-------------------------------~~~Vm~pegaa~  446 (523)
T 1on3_A          398 ATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSA-------------------------------EIAVMGAEGAAN  446 (523)
T ss_dssp             CCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTC-------------------------------EEESSCHHHHHH
T ss_pred             CCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCC-------------------------------eEEecCHHHHHH
Confidence            99999999999999888754433    6676666655                               455655555554


Q ss_pred             HHhhhc-----CHHHHHH-HHh--cCCCcCHHHHHHcCCcceecCC
Q psy9060         233 RLPKLT-----ALPNVLD-MTL--TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 ~l~r~~-----G~~~a~~-l~l--tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      .+-+.-     .....++ +.-  .-+.-++..+.+.|+||.|+++
T Consensus       447 Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p  492 (523)
T 1on3_A          447 VIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDP  492 (523)
T ss_dssp             HHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCG
T ss_pred             HHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeCH
Confidence            443321     1111111 221  1112466789999999999987

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.20  E-value=0.044  Score=56.03  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=67.8

Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcC
Q psy9060          78 LDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESS  157 (366)
Q Consensus        78 lnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  157 (366)
                      =|+|......++.+-.+...+.++.+... .+- +|.+-..+ .|..|.+          .+.....+.+..++..+.+.
T Consensus       353 an~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iP-lv~lvDt~-Gf~~G~~----------~E~~Gi~~~ga~~l~a~~~~  419 (548)
T 2bzr_A          353 ANQPTHFAGCLDINASEKAARFVRTCDCF-NIP-IVMLVDVP-GFLPGTD----------QEYNGIIRRGAKLLYAYGEA  419 (548)
T ss_dssp             EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEEC-CBCCCHH----------HHHTTHHHHHHHHHHHHHHC
T ss_pred             EECCcccCCCCCHHHHHHHHHHHHHHHhc-CCC-EEEEeecc-CCCCChH----------HHHhhHHHHHHHHHHHHhCC
Confidence            34444234679999999999988888653 344 34444433 3555543          22223445677788888899


Q ss_pred             CCCEEEEeccccchhHHHHHh----hccEEEEecCC
Q psy9060         158 PKPIVAAISGSCLGGGLEVAL----ACHYRIAVKDK  189 (366)
Q Consensus       158 ~kP~Iaav~G~a~GgG~elal----acD~ria~~~a  189 (366)
                      ..|+|+.|-|.|.|||.....    .+|+++|.+++
T Consensus       420 ~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a  455 (548)
T 2bzr_A          420 TVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTA  455 (548)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTC
T ss_pred             CCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCC
Confidence            999999999999998875543    38888888776

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.14  E-value=0.072  Score=54.20  Aligned_cols=100  Identities=16%  Similarity=0.364  Sum_probs=69.9

Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHH
Q psy9060          76 VTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIE  155 (366)
Q Consensus        76 Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~  155 (366)
                      |.-|+|......++.+-.+...+.++.+++.. +- +|.+...++ |..|.+          .+...+.+.+..++..+.
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~~-iP-lv~lvDtpG-f~~G~~----------~E~~gi~~~~Ak~l~a~a  402 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAFN-VP-VLTFVDVPG-FLPGVD----------QEHDGIIRRGAKLIFAYA  402 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEECC-BCCCHH----------HHHTTHHHHHHHHHHHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhcC-CC-EEEEeeCCC-CCccHH----------HHHhhHHHHHHHHHHHHH
Confidence            33455542346799999988888888776543 45 344444443 666544          223445677888999999


Q ss_pred             cCCCCEEEEeccccchhHHHHHhh-----ccEEEEecCC
Q psy9060         156 SSPKPIVAAISGSCLGGGLEVALA-----CHYRIAVKDK  189 (366)
Q Consensus       156 ~~~kP~Iaav~G~a~GgG~elala-----cD~ria~~~a  189 (366)
                      +...|+|+.|-|.+.|||+ ++++     .|+++|.+++
T Consensus       403 ~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a  440 (530)
T 3iav_A          403 EATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTA  440 (530)
T ss_dssp             HCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTC
T ss_pred             hCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCc
Confidence            9999999999999998776 4444     6888887776

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.05  E-value=0.074  Score=54.80  Aligned_cols=141  Identities=12%  Similarity=0.167  Sum_probs=91.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ...++++-.....+.++.++. ..+- +|.+...+ .|..|.+          .+...+.+.+.+++..+.++..|+|+.
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iP-lv~lvDtp-Gf~~G~~----------~E~~Gi~~~gA~~~~a~a~a~vP~itv  450 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLP-IVWIQDTT-GIDVGND----------AEKAELLGLGQSLIYSIQTSHIPQFEI  450 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCC-EEEEECCC-EECCSHH----------HHHTTHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCC-eEEEecCC-CCCCcHH----------HHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            356889989888888887654 3455 44444443 5766543          233345677889999999999999999


Q ss_pred             eccccchhHHHHHhh-----c--cEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhh
Q psy9060         165 ISGSCLGGGLEVALA-----C--HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL  237 (366)
Q Consensus       165 v~G~a~GgG~elala-----c--D~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~  237 (366)
                      |-|.+.|||. ++++     .  |+++|.+++                               .++++++-|....+-+.
T Consensus       451 I~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A-------------------------------~~~Vm~pegaa~Il~r~  498 (587)
T 1pix_A          451 TLRKGTAAAH-YVLGGPQGNDTNAFSIGTAAT-------------------------------EIAVMNGETAATAMYSR  498 (587)
T ss_dssp             ECSEEETTHH-HHTTCTTCTTTEEEEEECTTC-------------------------------EEESSCHHHHHHHHHHH
T ss_pred             EcCCCccHHH-HHhcCcccCcccceeeeccCC-------------------------------eEecCCHHHHHHHHHhh
Confidence            9999998885 4444     4  888777766                               33455444444333321


Q ss_pred             cCHH-----------HH-H-HHHh-cCCCcCHHHHHHcCCcceecCC
Q psy9060         238 TALP-----------NV-L-DMTL-TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       238 ~G~~-----------~a-~-~l~l-tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      --..           .+ + +++- .-+..++..|.+.|+||.|+++
T Consensus       499 ~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~p~~aa~~g~iD~VI~p  545 (587)
T 1pix_A          499 RLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDM  545 (587)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCT
T ss_pred             hhhhhhhcCCChHHHHHHHHHHHHHHHHhCCHHHHHhcCCCccccCH
Confidence            1000           00 0 1110 0114788999999999999987

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.04  E-value=0.066  Score=54.44  Aligned_cols=100  Identities=18%  Similarity=0.300  Sum_probs=69.3

Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy9060          77 TLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIES  156 (366)
Q Consensus        77 tlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  156 (366)
                      .-|+|......++.+-.+...+.++.+++. .+- +|.+...+ .|..|.+          .+...+.+.+..++..+.+
T Consensus       343 ian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iP-lv~lvDtp-Gf~~G~~----------~E~~Gi~~~gAk~l~a~a~  409 (531)
T 3n6r_B          343 VANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIP-LLTLIDVP-GFLPGTS----------QEYGGVIKHGAKLLYAYGE  409 (531)
T ss_dssp             EEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEEC-SBCCSHH----------HHHTTHHHHHHHHHHHHHH
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHhhcc-CCC-EEEEeCCC-CCCCCHH----------HHHhhHHHHHHHHHHHHHh
Confidence            345554233579999898888888877653 345 34444444 3544433          2333456778889999999


Q ss_pred             CCCCEEEEeccccchhHHHHHhh----ccEEEEecCC
Q psy9060         157 SPKPIVAAISGSCLGGGLEVALA----CHYRIAVKDK  189 (366)
Q Consensus       157 ~~kP~Iaav~G~a~GgG~elala----cD~ria~~~a  189 (366)
                      ...|+|+.|-|.+.|||..-...    +|+++|.+++
T Consensus       410 a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A  446 (531)
T 3n6r_B          410 ATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTA  446 (531)
T ss_dssp             CCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTC
T ss_pred             CCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCc
Confidence            99999999999999988754443    8888888776

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.99  E-value=0.08  Score=54.48  Aligned_cols=96  Identities=11%  Similarity=0.034  Sum_probs=59.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Q psy9060          84 KVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVA  163 (366)
Q Consensus        84 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  163 (366)
                      ...+++....+.+..+++.+.+.. +- +|.+..+|+++.     .+-......  ...+.+ +..-...+.....|+|+
T Consensus       118 ~gGS~g~~~~~Ki~Ra~e~A~~~~-lP-vI~l~dSgGArl-----~~qe~~~~~--l~~~g~-if~~~~~ls~~~iP~Is  187 (588)
T 3gf3_A          118 MAGAWVPGQAENLIRCSDAAKMMH-LP-LIYLLNCSGVEF-----PNQDKVYPN--RRGGGT-PFFRNSELNQLGIPVIV  187 (588)
T ss_dssp             GGGCBCTTHHHHHHHHHHHHHHHT-CC-EEEEECCCCBCG-----GGHHHHSSS--TTSTTH-HHHHHHHHHHTTCCEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHcC-CC-EEEEEcCCCcCc-----ccccccccc--hhhHHH-HHHHHHHHhcCCCCEEE
Confidence            567788888999999999888654 34 344444444433     110000000  000001 11122334456789999


Q ss_pred             EeccccchhHHHHHhhccEEEEecCC
Q psy9060         164 AISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       164 av~G~a~GgG~elalacD~ria~~~a  189 (366)
                      +|.|.|.|||...++++|++++.+++
T Consensus       188 vv~Gp~~gGgAy~a~~~~vim~~~~a  213 (588)
T 3gf3_A          188 GIYGTNPAGGGYHSISPTILIAHQDA  213 (588)
T ss_dssp             EECSEEETHHHHHHHSSSEEEEETTC
T ss_pred             EEeCCCCchhhhHhhCCeEEEEECCc
Confidence            99999999988778888888888876

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=94.83  E-value=0.64  Score=47.45  Aligned_cols=91  Identities=14%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060          86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI  165 (366)
Q Consensus        86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav  165 (366)
                      ..++.+..+...+.++.+++. .+- +|++...++ |..|.+          .+...+.+.+..++..+.+...|+|..|
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iP-lv~lvDtpG-f~~G~~----------~E~~Gi~~~gAk~~~a~~~a~vP~itvi  432 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIP-LLFLQNITG-FMVGQK----------YEAGGIAKHGAKLVTAVACARVPKFTVL  432 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCC-EEEEEEECC-BCCSHH----------HHHTTHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCC-EEEEecCcC-CCCCHH----------HHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            468888888888888877653 344 344455443 555443          2223345677888999999999999999


Q ss_pred             ccccchhHHHHHh----hccEEEEecCC
Q psy9060         166 SGSCLGGGLEVAL----ACHYRIAVKDK  189 (366)
Q Consensus       166 ~G~a~GgG~elal----acD~ria~~~a  189 (366)
                      -|.+.|||..-..    .+|+++|.+++
T Consensus       433 ~g~~~Ggg~~am~~~~~~~d~~~a~p~A  460 (555)
T 3u9r_B          433 IGGSFGAGNYGMCGRAYDPRFLWMWPNA  460 (555)
T ss_dssp             EEEEETTHHHHTTCGGGCCSEEEECTTC
T ss_pred             eCCccchhhHhhcCccCCCCeEEEcCCc
Confidence            9999988754432    36888887766

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=94.15  E-value=0.16  Score=53.56  Aligned_cols=33  Identities=12%  Similarity=0.098  Sum_probs=30.5

Q ss_pred             CCCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         157 SPKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       157 ~~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                      ...|+|+.|.|+|.|||..+...||++|+.+++
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s  277 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQ  277 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTC
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCc
Confidence            456999999999999999999999999999875

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=92.92  E-value=0.81  Score=47.04  Aligned_cols=140  Identities=14%  Similarity=0.193  Sum_probs=88.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060          86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI  165 (366)
Q Consensus        86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav  165 (366)
                      ..++.+-.+...+.++.+++. ++- +|.+... ..|..|.+          .+...+.+.+..++..+.++..|+|..|
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iP-lv~lvDt-pGf~~G~~----------aE~~Gi~~~gAk~l~a~a~a~VP~itvI  453 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIP-LIWLQDT-TGIDVGDE----------AEKAELLGLGQSLIYSIENSKLPSLEIT  453 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCC-EEEEECC-CEECCSHH----------HHHTTHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCC-eEEEecC-CCCCCCHH----------HHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            367888888888888877653 345 3444444 35766644          2333456778899999999999999999


Q ss_pred             ccccchhHHHHHhhc-------cEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhhh-
Q psy9060         166 SGSCLGGGLEVALAC-------HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKL-  237 (366)
Q Consensus       166 ~G~a~GgG~elalac-------D~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~-  237 (366)
                      -|.+.|||. +++++       |+++|.+++                               .++++++-|....+-+. 
T Consensus       454 ~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A-------------------------------~~sVm~pEgaa~Il~~~~  501 (588)
T 3gf3_A          454 IRKASAAAH-YVLGGPQGNNTNVFSIGTGAC-------------------------------EYYVMPGETAANAMYSRK  501 (588)
T ss_dssp             SSEEETTHH-HHTTCTTCTTTEEEEEECTTC-------------------------------EEESSCHHHHHHHHHHHH
T ss_pred             cCCccHHHH-HHhcccccCCccceEEECCCc-------------------------------eEEeCCHHHHHHHHhhhH
Confidence            999988876 44432       255555544                               55666655555444321 


Q ss_pred             c------CH------HHHHHHHh-cCCCcCHHHHHHcCCcceecCC
Q psy9060         238 T------AL------PNVLDMTL-TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       238 ~------G~------~~a~~l~l-tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +      |.      ....++.- .-+..++-.|.+.|+||.|++|
T Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~aA~r~~vD~VIdP  547 (588)
T 3gf3_A          502 LVKAKKAGEDLQPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVDM  547 (588)
T ss_dssp             HHHC-------CHHHHHHHHHHHHHHHTTSHHHHHHTTSSSEECCG
T ss_pred             HhhhhccccccchHHHHHHHHHHHHHHhCCHHHHHhcCCCCeeeCH
Confidence            1      10      00011111 0113478889999999999988

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=92.66  E-value=0.33  Score=51.50  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             CCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         158 PKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       158 ~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                      ..|+|+.|.|.|.|||..++..||++|+.+++
T Consensus       259 ~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a  290 (793)
T 2x24_A          259 EIVTISMVSCRALGIGAYLVRLGQRVIQVENS  290 (793)
T ss_dssp             HSCEEEEECSEEETHHHHHHHHTCCEEEETTC
T ss_pred             CCCEEEEEecCCchHHHHHHhhCCeEEEeccc
Confidence            46999999999999999999999999999875

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=90.12  E-value=2.4  Score=44.90  Aligned_cols=91  Identities=15%  Similarity=0.226  Sum_probs=62.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060          86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI  165 (366)
Q Consensus        86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav  165 (366)
                      ..++++-.....+.++.++. ..+- +|++... ..|..|.+          .+...+.+.+..++..+.++..|+|+.|
T Consensus       462 G~l~~~~a~KaarfI~~cd~-f~iP-lv~LvDt-pGf~~G~~----------aE~~Gi~~~gAkll~A~a~a~VP~itvI  528 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFNR-EKLP-LMIFANW-RGFSGGMK----------DMYDQVLKFGAYIVDGLRKYRQPVLIYI  528 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHHT-TTCC-EEEECCB-CEECCSHH----------HHHTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CcccHHHHHHHHHHHHHhcc-CCCC-EEEEecC-CCCCCCHH----------HHHhhHHHHHHHHHHHHHhcCCCEEEEE
Confidence            36889999999999998864 3455 4444444 35776654          2333456788899999999999999999


Q ss_pred             --ccccchhHHHHH---hhccE--EEEecCC
Q psy9060         166 --SGSCLGGGLEVA---LACHY--RIAVKDK  189 (366)
Q Consensus       166 --~G~a~GgG~ela---lacD~--ria~~~a  189 (366)
                        .|.+.||++.++   +..|+  ++|.+++
T Consensus       529 ~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A  559 (793)
T 2x24_A          529 PPYAEVRGGSWAVMDTSINPLCIEMYADRES  559 (793)
T ss_dssp             CTTCEEEHHHHHTTCGGGSTTTEEEEEETTC
T ss_pred             ecCCcccchhHHhhhcccCccHHHHhhhccC
Confidence              898877655322   23454  4555544

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=80.68  E-value=4.3  Score=42.76  Aligned_cols=81  Identities=17%  Similarity=0.313  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060          86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI  165 (366)
Q Consensus        86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav  165 (366)
                      ..++++-.....+.++.++....+- +|++... ..|..|.+          .+...+.+.+..++..+.++..|+|+.|
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iP-Lv~LvDt-pGf~~G~~----------aE~~Gi~k~gAkll~A~a~a~VP~itVI  514 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLP-MMILANW-RGFSGGQR----------DMFNEVLKYGSFIVDALVDYKQPIIIYI  514 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCC-EEECCCC-CEECCSHH----------HHHTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCC-EEEEecC-CCCCCCHH----------HHHccHHHHHHHHHHHHHhCCCCEEEEE
Confidence            4688888888888888887623455 3444443 45777654          2333456788899999999999999999


Q ss_pred             c--cccchhHHHHHhh
Q psy9060         166 S--GSCLGGGLEVALA  179 (366)
Q Consensus       166 ~--G~a~GgG~elala  179 (366)
                      -  |.+.||++ ++++
T Consensus       515 ~RkGe~~GGA~-~am~  529 (758)
T 3k8x_A          515 PPTGELRGGSW-VVVD  529 (758)
T ss_dssp             CTTCEEETHHH-HTTC
T ss_pred             ecCCccchHHH-HHhC
Confidence            8  99988777 5655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	2e-35
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	1e-19
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	9e-18
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	9e-16
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	6e-15
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	1e-14
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	8e-13
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	1e-12
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	6e-07
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	4e-06
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	7e-05
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	2e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (322), Expect = 2e-35
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 29/198 (14%)

Query: 66  KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG 125
           K+     V ++ L+ P   +N+L + ++ E+   L   + D ++ + V+  G+       
Sbjct: 10  KKGKNSSVGLIQLNRPK-ALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGA 68

Query: 126 ADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIA 185
               M    +        S         I    KP++AA++G  LGGG E+A+ C    A
Sbjct: 69  DIKEM----QNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYA 124

Query: 186 VKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLD 245
            +  +                         G PE++LG +PGAGGTQRL +       ++
Sbjct: 125 GEKAQ------------------------FGQPEILLGTIPGAGGTQRLTRAVGKSLAME 160

Query: 246 MTLTGKTLKADKAKKMGI 263
           M LTG  + A  AK+ G+
Sbjct: 161 MVLTGDRISAQDAKQAGL 178

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 85.1 bits (209), Expect = 1e-19
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 38/255 (14%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G V VV L+ P  + N L+ E+   +   L  +++D  +R AV+++G+   F AGAD++ 
Sbjct: 7   GHVAVVFLNDPE-RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAF 64

Query: 131 LAACKTADQVKQISKSG--QQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
           L         +    S    ++   + + PKP VAA++G  + GG  +ALAC   +  ++
Sbjct: 65  LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
            + G    ++        V+  +  G                              D+ L
Sbjct: 125 ARLGYTEVKIGFVAALVSVILVRAVG-------------------------EKAAKDLLL 159

Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIK 308
           TG+ ++A +AK +G+V+++  P         E      EEVA N  + L   K  +    
Sbjct: 160 TGRLVEAREAKALGLVNRIAPP-----GKALEEAKALAEEVAKNAPTSLRLTKELLLA-- 212

Query: 309 PMIPDKVLDVALKFE 323
             +P   L+   +  
Sbjct: 213 --LPGMGLEDGFRLA 225

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.2 bits (196), Expect = 9e-18
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 12/132 (9%)

Query: 67  EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGA 126
             A   VL V L+ P  K N++N     E+    ++I  DS  R AV++SG    F +G 
Sbjct: 8   TSAQKHVLHVQLNRPE-KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGI 65

Query: 127 DISMLAA----------CKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEV 176
           D+  +A+           + A  ++ +    Q+  + IE  PKP++AAI G C+GGG+++
Sbjct: 66  DLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDL 125

Query: 177 ALACHYRIAVKD 188
             AC  R   +D
Sbjct: 126 ISACDIRYCTQD 137

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 74.7 bits (182), Expect = 9e-16
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 1   MSGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKK 59
            +G  YPAP++ +  ++     G     E EA GF++LA T  S  L+GLF    E KK
Sbjct: 244 QAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 72.4 bits (176), Expect = 6e-15
 Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 44/282 (15%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
             ++ +  D  G  VN  N   ++E++  +  I++D+S++  VI+S     FI GADI+ 
Sbjct: 15  SGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVK-GVIVSSGKDVFIVGADITE 73

Query: 131 LAACKTADQVKQI--SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD 188
                     + I  +    +I S+ E    P VAAI+G  LGGGLE+ LA  +R+    
Sbjct: 74  FVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS 133

Query: 189 KKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTL 248
            K                         GLPEV LG+ PG GGT RLP+L  + N ++   
Sbjct: 134 AKI------------------------GLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIA 169

Query: 249 TGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLKINRIK 308
           +GK  +A+ A K+  VD +V               + L   A++   +  SG+L     +
Sbjct: 170 SGKENRAEDALKVSAVDAVVTA-------------DKLGAAALDLIKRAISGELDYKAKR 216

Query: 309 PMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLK 350
               +K+          +   F  AK  V   +G  YPAP++
Sbjct: 217 QPKLEKLKL----NAIEQMMAFETAKGFVAGQAGPNYPAPVE 254

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.9 bits (172), Expect = 1e-14
 Identities = 35/268 (13%), Positives = 68/268 (25%), Gaps = 46/268 (17%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISM 130
           G   ++ L +P   +N+L  E    +  +L     +  +    II      F +GAD   
Sbjct: 13  GPFFIIHLINPD-NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKG 70

Query: 131 LAACKTAD----------QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
           +A  +  D           V         +        K ++  ++G  +G    +   C
Sbjct: 71  IAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALC 130

Query: 181 HYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTAL 240
               ++ DK   L                      G       L                
Sbjct: 131 DIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECL---------------- 174

Query: 241 PNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG 300
                  +  K  K D   + G + +           P      +  +V      ++   
Sbjct: 175 -------MFNKPFKYDIMCENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGL 220

Query: 301 KLK-INRIKPMI---PDKVLDVALKFEF 324
            L     +K ++        + A   E 
Sbjct: 221 YLPSCLGMKKLLKSNHIDAFNKANSVEV 248

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 8e-13
 Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 38/265 (14%)

Query: 62  TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGC 121
            +H +E+  G ++V+ ++    K NSL+  ++  +   +  ++SD  +R+ +I S  PG 
Sbjct: 6   VRHLEEENRG-IVVLGINRAYGK-NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGI 63

Query: 122 FIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACH 181
           F          A  ++ +V       + ++++I + P P +AAI G  LGGGLE+ALAC 
Sbjct: 64  FC-AGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACD 122

Query: 182 YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALP 241
            R+A    K                        +GL E  L ++PG GGTQRLP+   + 
Sbjct: 123 IRVAASSAK------------------------MGLVETKLAIIPGGGGTQRLPRAIGMS 158

Query: 242 NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGK 301
              ++  + + L   +AK +G++  ++E          +       +        L  G 
Sbjct: 159 LAKELIFSARVLDGKEAKAVGLISHVLE--------QNQEGDAAYRKALDLAREFLPQGP 210

Query: 302 LKINRIKPMI---PDKVLDVALKFE 323
           + +   K  I    +  L   L  E
Sbjct: 211 VAMRVAKLAINQGMEVDLVTGLAIE 235

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.5 bits (158), Expect = 1e-12
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 18/135 (13%)

Query: 67  EKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAG 125
            + V D  + V  + P V+ N+     + E+  +L   +    +   ++    P     G
Sbjct: 23  HRHVDDATVRVAFNRPEVR-NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGG 81

Query: 126 ADISMLA----------------ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSC 169
                                     T D  +       ++   I   PK ++  ++G  
Sbjct: 82  WAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWA 141

Query: 170 LGGGLEVALACHYRI 184
            GGG  + + C   +
Sbjct: 142 AGGGHSLHVVCDLTL 156

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 19/111 (17%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 73  VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLA 132
           VL +T      K+N++   +   +  + R +++   +R+ ++          G+   +  
Sbjct: 20  VLEITFRGE--KLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEE 77

Query: 133 ACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYR 183
              + + + ++    + ++    + P+P+VAA+    +G GL +ALA    
Sbjct: 78  MRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 128

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 67  EKAVGD-VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVI 114
           E   G  V V+   +P   VNSL+ E ++E+   L ++++D S R  ++
Sbjct: 7   EPDAGAGVAVMKFKNP--PVNSLSLEFLTELVISLEKLENDKSFRGVIL 53

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 3/133 (2%)

Query: 61  STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPG 120
           S ++     +  V V+  +    K+N+L+   + ++   L  +         +I+    G
Sbjct: 2   SYQYVNVVTINKVAVIEFNYGR-KLNALSKVFIDDLMQALSDLNRPEIR--CIILRAPSG 58

Query: 121 CFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALAC 180
             +  A   +                 +QI   I+  PKPI++ + GS  GG  E+ ++ 
Sbjct: 59  SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS 118

Query: 181 HYRIAVKDKKTGL 193
              IA       +
Sbjct: 119 DLIIAASTSTFSM 131

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 71  GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCF 122
                + L +   + N+LN+EV+ E+ + L    +D S    V+ S     F
Sbjct: 10  DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDS--KLVLFSAAGSVF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	98.66
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.86
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.68
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.64
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.56
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.55
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.41
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.07
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.95
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.94
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.89
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.64
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.62
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.59
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.37
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.36
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.27
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.83
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	93.85
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	90.97

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.3e-48  Score=373.06  Aligned_cols=255  Identities=29%  Similarity=0.458  Sum_probs=217.7

Q ss_pred             CcceeEEE-eCCEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC--H
Q psy9060          62 TKHFKEKA-VGDVLVVTLD-SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT--A  137 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itln-rp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~--~  137 (366)
                      ++.+++++ +++|++|+|| +|+ +.|++|.+|+++|.++++.+..|+++++|| ++|.|+.||+|+||+++.....  .
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~-~~Nal~~~~~~el~~al~~~~~d~~v~~vV-l~g~g~~F~aG~Dl~~~~~~~~~~~   82 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGE-SVNKFNRLTLNELRQAVDAIKADASVKGVI-VSSGKDVFIVGADITEFVENFKLPD   82 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTS-SSCBCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSSSBBCCCHHHHHHHTTSCH
T ss_pred             CceEEEEEecCCEEEEEECCCCc-ccCCCCHHHHHHHHHHHHHHHhCCCceEEE-EECCCCCccchhhhhhhhhcccccc
Confidence            45677776 6789999999 787 799999999999999999999999999755 5788999999999999875432  2


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      .........+++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a------------------------~f~~  138 (310)
T d1wdka4          83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA------------------------KIGL  138 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTC------------------------EEEC
T ss_pred             hhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccc------------------------eecc
Confidence            3333344457889999999999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|+|++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.++++++
T Consensus       139 pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~~  205 (310)
T d1wdka4         139 PEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTA-------------DKLGAAALDLIKRA  205 (310)
T ss_dssp             GGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-------------GGHHHHHHHHHHHH
T ss_pred             cccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEEccH-------------HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997             67999999999999


Q ss_pred             hcCcccccccCCCCcchhhhhhhhchHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHhHHhc
Q psy9060         298 ASGKLKINRIKPMIPDKVLDVALKFEFVRNQIFGKAKEKVMKMSGGLYPAPLKSKQGLIFFT  359 (366)
Q Consensus       298 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pap~~~~~~~~~~~  359 (366)
                      ++.+..+...+...    ..........+...+...++.+.++++++||||.+++++|+...
T Consensus       206 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pA~~~~l~~v~~~~  263 (310)
T d1wdka4         206 ISGELDYKAKRQPK----LEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAA  263 (310)
T ss_dssp             HTTSSCHHHHHGGG----GSCCSCCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             Hhcccchhhhhhhh----cccccccchhhhHHHHHhhhhhhhhccCCChHHHHHHHHHHHHh
Confidence            98876543322111    11112234455667888899999999999999999999998754

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=3.5e-44  Score=329.87  Aligned_cols=203  Identities=23%  Similarity=0.370  Sum_probs=183.3

Q ss_pred             EEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHH
Q psy9060          67 EKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKS  146 (366)
Q Consensus        67 ~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  146 (366)
                      .+.+|+|++||||||+ +.|++|.+|+.+|.++++.+.+|+++++|||+++.+++||+|+|++++......++...+...
T Consensus         4 ~~~~d~I~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (230)
T d2a7ka1           4 EENSDEVRVITLDHPN-KHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDR   82 (230)
T ss_dssp             EEEETTEEEEEECCSS-TTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHH
T ss_pred             EEecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhh
Confidence            3457899999999998 789999999999999999999999999877755566899999999999876666777778888


Q ss_pred             HHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCC
Q psy9060         147 GQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLP  226 (366)
Q Consensus       147 ~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p  226 (366)
                      +.+++..+.++|||+||+|||+|+|||++|+++||+|||++++                        +|++||+++|++|
T Consensus        83 ~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a------------------------~f~~pe~~~G~~p  138 (230)
T d2a7ka1          83 VIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTA------------------------NFVMPELKHGIGC  138 (230)
T ss_dssp             HHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTC------------------------EEECCGGGGTCCC
T ss_pred             hhhhhhcccchhcceeeecccccccccccchhccchhhccccc------------------------hhhhccccccccc
Confidence            8999999999999999999999999999999999999999987                        9999999999999


Q ss_pred             ChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc-cc
Q psy9060         227 GAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK-IN  305 (366)
Q Consensus       227 ~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~-~~  305 (366)
                      ++|+ .+|++++|..++++++++|+.++++||+++||||+|+|+             +++.+.+.+++++|++.|.. +.
T Consensus       139 ~~g~-~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~ia~~~~~a~~  204 (230)
T d2a7ka1         139 SVGA-AILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-------------SALLDAAITQAHVMASYPASAFI  204 (230)
T ss_dssp             HHHH-HHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-------------HHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             cccc-cccccccccccccccccccccchHHHHHHhhhcccCCCh-------------HHHHHHHHHHHHHHHcCCHHHHH
Confidence            7765 589999999999999999999999999999999999997             78999999999999988653 33


Q ss_pred             ccC
Q psy9060         306 RIK  308 (366)
Q Consensus       306 ~~~  308 (366)
                      .+|
T Consensus       205 ~~K  207 (230)
T d2a7ka1         205 NTK  207 (230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            344

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-44  Score=329.81  Aligned_cols=207  Identities=18%  Similarity=0.285  Sum_probs=181.4

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH---H
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA---D  138 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~---~  138 (366)
                      |+++.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+.+  +||++|.|+.||+|+|++++......   .
T Consensus         2 ~~~i~~~~~~gi~~Itlnrp~-~~Nals~~~~~~l~~~l~~~~~d~~v--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   78 (245)
T d2f6qa1           2 FETLVVTSEDGITKIMFNRPK-KKNAINTEMYHEIMRALKAASKDDSI--ITVLTGNGDYYSSGNDLTNFTDIPPGGVEE   78 (245)
T ss_dssp             CSSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHSSCS--EEEEEESTTCSBCCBCC----CCCTTHHHH
T ss_pred             cceEEEEEECCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHhcCCce--EEeecCCCccccCCccchhhhccccccccc
Confidence            578999999999999999998 78999999999999999999999876  45668999999999999998764332   2


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      .........++++.++.++|||+||+|||+|+|||++++++||+||+++++                        +|++|
T Consensus        79 ~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a------------------------~f~~p  134 (245)
T d2f6qa1          79 KAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA------------------------TFHTP  134 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTC------------------------EEECC
T ss_pred             ccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccC------------------------eEecc
Confidence            233445556789999999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|+             +++.+++.+++++++
T Consensus       135 e~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la  201 (245)
T d2f6qa1         135 FSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPD-------------STFQKEVWTRLKAFA  201 (245)
T ss_dssp             TGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-------------TTHHHHHHHHHHHHT
T ss_pred             cccCCCCccccchhhcccccccchhhhhcccccccccccccccccccccCCc-------------chHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987             578899999999999


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      +.++. +...|
T Consensus       202 ~~~~~a~~~~K  212 (245)
T d2f6qa1         202 KLPPNALRISK  212 (245)
T ss_dssp             TSCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            87643 43344

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-43  Score=329.20  Aligned_cols=207  Identities=19%  Similarity=0.290  Sum_probs=184.2

Q ss_pred             CcceeEEEeCCEEEEEec-CCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc---CCH
Q psy9060          62 TKHFKEKAVGDVLVVTLD-SPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC---KTA  137 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itln-rp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~---~~~  137 (366)
                      |+++.++++++|++|++| ||+ +.|++|.+|+++|.++++.++.|+ +++| |++|.|+.||+|+|++++...   ...
T Consensus         1 y~~i~v~~~~gi~~i~l~~rp~-~~Nals~~~~~el~~al~~~~~d~-~~~v-vl~g~g~~FsaG~Dl~~~~~~~~~~~~   77 (258)
T d2fw2a1           1 YRDIVVKKEDGFTQIVLSTRST-EKNALNTEVIKEMVNALNSAAADD-SKLV-LFSAAGSVFCCGLDFGYFVRHLRNDRN   77 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCSSS-STTCBCHHHHHHHHHHHHHHHHSS-CSEE-EEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred             CceEEEEEECCEEEEEECCCCc-ccCCCCHHHHHHHHHHHHHHHcCC-CEEE-EEecCccccccccccchhhhccccccc
Confidence            567899999999999998 687 789999999999999999999874 6864 568999999999999998642   222


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                      ....++.+.+++++..+.++|||+||+|||+|+|||++++++||+||+++++                        +|++
T Consensus        78 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a------------------------~f~~  133 (258)
T d2fw2a1          78 TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKA------------------------WFQT  133 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTC------------------------EEEC
T ss_pred             chhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceeccc------------------------ceee
Confidence            3344566778899999999999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|++++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.+++++|
T Consensus       134 pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~i  200 (258)
T d2fw2a1         134 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT-------------GTFTQEVMIQIKEL  200 (258)
T ss_dssp             CHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECS-------------TTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcCccccchhhccCcccccccccccccccccccc-------------cccccccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999997             57888999999999


Q ss_pred             hcCccc-ccccC
Q psy9060         298 ASGKLK-INRIK  308 (366)
Q Consensus       298 a~~~~~-~~~~~  308 (366)
                      ++.+.. +...|
T Consensus       201 ~~~~~~a~~~~K  212 (258)
T d2fw2a1         201 ASYNAIVLEECK  212 (258)
T ss_dssp             TTSCHHHHHHHH
T ss_pred             hhhhHHHHHHHH
Confidence            988653 44444

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=8.3e-43  Score=327.51  Aligned_cols=204  Identities=24%  Similarity=0.373  Sum_probs=184.2

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH---
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA---  137 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~---  137 (366)
                      +|+.|.++++++|++|+||||+ +.|++|.+|+.+|.++++.+++|+++++|| ++|.|+.||+|+|++++......   
T Consensus         1 my~~i~~~i~dgVa~Itlnrp~-~~Nal~~~~~~el~~~l~~~~~d~~i~~vv-ltg~g~~F~aG~Dl~~~~~~~~~~~~   78 (269)
T d1nzya_           1 MYEAIGHRVEDGVAEITIKLPR-HRNALSVKAMQEVTDALNRAEEDDSVGAVM-ITGAEDAFCAGFYLREIPLDKGVAGV   78 (269)
T ss_dssp             CCSSEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EEESTTCSBCCBCGGGSCSSSHHHHH
T ss_pred             CCCceEEEEECCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EeCCcccccchhhHHHHhhcccccch
Confidence            3678999999999999999998 789999999999999999999999999755 57889999999999998643222   


Q ss_pred             -HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccc
Q psy9060         138 -DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLG  216 (366)
Q Consensus       138 -~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (366)
                       +........++.++.++.++|||+||+|||+|+|||++|+++||+||+++++                        +|+
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a------------------------~~~  134 (269)
T d1nzya_          79 RDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA------------------------KFV  134 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEE
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhh------------------------hhc
Confidence             2223334456789999999999999999999999999999999999999987                        999


Q ss_pred             ccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy9060         217 LPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQ  296 (366)
Q Consensus       217 ~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~  296 (366)
                      +||.++|+.|++|+++++++++|..++++++++|+.++|+||+++||||+|+++             +++.+.+.++|++
T Consensus       135 ~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~  201 (269)
T d1nzya_         135 CAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-------------DEFREVAWKVARE  201 (269)
T ss_dssp             CCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECH-------------HHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCccccccc-------------cccccchhhhhhh
Confidence            999999999999999999999999999999999999999999999999999987             7899999999999


Q ss_pred             HhcCccc
Q psy9060         297 LASGKLK  303 (366)
Q Consensus       297 la~~~~~  303 (366)
                      |++.+..
T Consensus       202 la~~~~~  208 (269)
T d1nzya_         202 LAAAPTH  208 (269)
T ss_dssp             HHHSCHH
T ss_pred             hhhhhHH
Confidence            9988653

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.9e-44  Score=332.38  Aligned_cols=201  Identities=30%  Similarity=0.484  Sum_probs=178.7

Q ss_pred             CCcceeEEEe---CCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCH
Q psy9060          61 STKHFKEKAV---GDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTA  137 (366)
Q Consensus        61 ~~~~i~~~~~---~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~  137 (366)
                      .|+.|.+++.   ++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++|| ++|.|+.||+|+|++++......
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vv-l~g~g~~F~aG~Dl~~~~~~~~~   79 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPK-ALNALCNGLIEELNQALETFEEDPAVGAIV-LTGGEKAFAAGADIKEMQNRTFQ   79 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EECCSSEEECCBCHHHHTTCCHH
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHHhCCCcceEE-Eecccccccccchhhhhhccchh
Confidence            4678999985   589999999998 789999999999999999999999999754 58999999999999998653221


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccc
Q psy9060         138 DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGL  217 (366)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (366)
                         ..+...+..++..+.++||||||+|||+|+|||++|+++||+|||++++                        +|++
T Consensus        80 ---~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a------------------------~f~~  132 (260)
T d1mj3a_          80 ---DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA------------------------QFGQ  132 (260)
T ss_dssp             ---HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEEC
T ss_pred             ---hhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCC------------------------EEEC
Confidence               2233455667888999999999999999999999999999999999987                        9999


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|++++|..+|++++++|++++++||+++||||+|+++             +++.+.+.++++++
T Consensus       133 pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-------------~~~~~~a~~~a~~i  199 (260)
T d1mj3a_         133 PEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-------------ETLVEEAIQCAEKI  199 (260)
T ss_dssp             GGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-------------TTHHHHHHHHHHHH
T ss_pred             chhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceeeecc-------------cccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999987             56778888999998


Q ss_pred             hcCccc
Q psy9060         298 ASGKLK  303 (366)
Q Consensus       298 a~~~~~  303 (366)
                      +..+..
T Consensus       200 ~~~~~~  205 (260)
T d1mj3a_         200 ANNSKI  205 (260)
T ss_dssp             HHSCHH
T ss_pred             cchhhH
Confidence            887643

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-43  Score=329.65  Aligned_cols=207  Identities=24%  Similarity=0.361  Sum_probs=179.4

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEee-CCCcEEcCCCcchhhhcCCHHH
Q psy9060          61 STKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISG-KPGCFIAGADISMLAACKTADQ  139 (366)
Q Consensus        61 ~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g-~g~~F~aG~Dl~~~~~~~~~~~  139 (366)
                      ++++|.++++|+|++|+||||+ +.|++|.+|+++|.++++.+++ +++++|||+++ .+++||+|+||+++.+...  +
T Consensus         2 ~~~~i~~~~~~~v~~Itlnrp~-~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~--~   77 (261)
T d1ef8a_           2 SYQYVNVVTINKVAVIEFNYGR-KLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGR--D   77 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCGG-GTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-------C
T ss_pred             CCCEEEEEEECCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCc--c
Confidence            5788999999999999999998 7899999999999999999974 57887666432 3679999999999865321  1


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccc
Q psy9060         140 VKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPE  219 (366)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  219 (366)
                      ...+.+.+++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||
T Consensus        78 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a------------------------~~~~pe  133 (261)
T d1ef8a_          78 PLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTS------------------------TFSMTP  133 (261)
T ss_dssp             TTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECCH
T ss_pred             ccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhH------------------------HHhhhh
Confidence            11233456788999999999999999999999999999999999999987                        999999


Q ss_pred             hhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy9060         220 VMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLAS  299 (366)
Q Consensus       220 ~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~  299 (366)
                      +++|++|++|+++++++++|..++++++++|+.++++||+++||||+|+++             +++.+.+.++++++++
T Consensus       134 ~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~-------------~~~~~~a~~~a~~la~  200 (261)
T d1ef8a_         134 VNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEV-------------EELEDFTLQMAHHISE  200 (261)
T ss_dssp             HHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-------------HHHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccCccccccccccCceEcHHHHHHcCCcceeeec-------------hhhhhhhHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987             7889999999999998


Q ss_pred             Ccc-cccccC
Q psy9060         300 GKL-KINRIK  308 (366)
Q Consensus       300 ~~~-~~~~~~  308 (366)
                      .++ .+..+|
T Consensus       201 ~~~~a~~~~K  210 (261)
T d1ef8a_         201 KAPLAIAVIK  210 (261)
T ss_dssp             SCHHHHHHHH
T ss_pred             cCcHHHHHHH
Confidence            754 344444

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.9e-43  Score=328.95  Aligned_cols=208  Identities=22%  Similarity=0.340  Sum_probs=187.0

Q ss_pred             CCcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc-CCHH
Q psy9060          61 STKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC-KTAD  138 (366)
Q Consensus        61 ~~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~-~~~~  138 (366)
                      .|+.+.++. ++||++|+| ||+ +.|++|.+|+.+|.++++.+..|++||+|| ++|.|++||+|+||+++... .+.+
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~-~~Nal~~~m~~el~~~~~~~~~d~~vr~vv-l~g~g~~FsaG~Dl~~~~~~~~~~~   83 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGE-KLNAMPPALHRGLARVWRDLEAVEGVRAVL-LRGEGGVFSAGGSFGLIEEMRASHE   83 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCS-GGGCBCHHHHHHHHHHHHHHTTCTTCSEEE-EEEGGGCCBCCBCHHHHHHHHHCHH
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCC-CCCCCCHHHHHHHHHHHHHHhhCCCCeEEE-Eecccccccccchhhhhhhhccccc
Confidence            467788887 678999999 788 799999999999999999999999999755 57889999999999998653 2345


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccccccccccc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLP  218 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (366)
                      ....+....++++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++|
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a------------------------~f~~p  139 (263)
T d1wz8a1          84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGT------------------------RLLDG  139 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTC------------------------EEECC
T ss_pred             ccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccc------------------------ccccc
Confidence            556667778899999999999999999999999999999999999999987                        99999


Q ss_pred             chhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy9060         219 EVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLA  298 (366)
Q Consensus       219 e~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la  298 (366)
                      |+++|++|++|+++++++++|..+|++|+++|++++++||+++||||+|+|+             +++.+.+.+++++|+
T Consensus       140 e~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la  206 (263)
T d1wz8a1         140 HLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVED-------------EKVYEKALEVAERLA  206 (263)
T ss_dssp             HHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhhhcccccccchhHHHhcCCcccccch-------------hhhhHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999987             678999999999999


Q ss_pred             cCccc-ccccC
Q psy9060         299 SGKLK-INRIK  308 (366)
Q Consensus       299 ~~~~~-~~~~~  308 (366)
                      ..+.. +..+|
T Consensus       207 ~~~~~al~~~K  217 (263)
T d1wz8a1         207 QGPKEALHHTK  217 (263)
T ss_dssp             TSCHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            88643 44444

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.3e-42  Score=323.03  Aligned_cols=209  Identities=22%  Similarity=0.306  Sum_probs=188.5

Q ss_pred             ccCCcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHH
Q psy9060          59 KNSTKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTAD  138 (366)
Q Consensus        59 k~~~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~  138 (366)
                      +..|++|+++++++|++|+||||+ +.|++|.+|+.+|.++++.+++|+++++|| ++|.|++||+|+|++++.. ....
T Consensus         9 ~~~y~~i~~~~~~~v~~itln~p~-~~Nal~~~~~~el~~al~~~~~d~~v~~vv-l~g~g~~FsaG~Dl~~~~~-~~~~   85 (249)
T d1szoa_           9 SQKYENIRLERDGGVLLVTVHTEG-KSLVWTSTAHDELAYCFHDIACDRENKVVI-LTGTGPSFCNEIDFTSFNL-GTPH   85 (249)
T ss_dssp             TTSCTTEEEEEETTEEEEEECBTT-BSCEECHHHHHHHHHHHHHHHHCTTCCEEE-EECBTTBSBCEECGGGSCC-SSHH
T ss_pred             hCCCCeEEEEEECCEEEEEECCCC-ccCCCCHHHHHHHHHHHHHHHhCCCcceEe-eecccccccccchhhhhhc-cccc
Confidence            457899999999999999999999 789999999999999999999999999755 5889999999999999855 3456


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccc-cc
Q psy9060         139 QVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGL-GL  217 (366)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~-~~  217 (366)
                      +...+...++.++..+.++|||||++|||+|.| |++|+++||+||+++++                        +| ++
T Consensus        86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a------------------------~f~~~  140 (249)
T d1szoa_          86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESA------------------------TFQDG  140 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTC------------------------EEECT
T ss_pred             chhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCCc------------------------EEEEe
Confidence            666777788899999999999999999998855 67999999999999987                        66 58


Q ss_pred             cchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q psy9060         218 PEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQL  297 (366)
Q Consensus       218 pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~l  297 (366)
                      ||+++|++|++|++++|+|++|..++++|+++|+.++++||+++||||+|+|+             +++.+.+.++++++
T Consensus       141 pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~l  207 (249)
T d1szoa_         141 PHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE-------------QELLPRAWELARGI  207 (249)
T ss_dssp             TSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-------------HHHHHHHHHHHHHH
T ss_pred             eccccccccccccccccccccCccceeeecccCCCCCHHHHHHhCCcCcccCH-------------HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997             78999999999999


Q ss_pred             hcCccc-ccccC
Q psy9060         298 ASGKLK-INRIK  308 (366)
Q Consensus       298 a~~~~~-~~~~~  308 (366)
                      +..+.. +..+|
T Consensus       208 a~~~~~a~~~~K  219 (249)
T d1szoa_         208 AEKPLLARRYAR  219 (249)
T ss_dssp             HTSCHHHHHHHH
T ss_pred             HcCCHHHHHHHH
Confidence            988653 33344

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-42  Score=324.70  Aligned_cols=184  Identities=18%  Similarity=0.278  Sum_probs=165.2

Q ss_pred             CcceeEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC-----
Q psy9060          62 TKHFKEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT-----  136 (366)
Q Consensus        62 ~~~i~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~-----  136 (366)
                      .+.|.++.+|+|++|+||||+ +.|++|.+|+.+|.++++.+++|++|++|| ++|.|++||+|+||+++.....     
T Consensus         4 ~e~i~~~~~~~v~~Itlnrp~-~~Na~~~~~~~el~~al~~~~~d~~v~~vV-l~g~g~~FsaG~Dl~~~~~~~~~~~~~   81 (266)
T d1pjha_           4 NEKISYRIEGPFFIIHLINPD-NLNALEGEDYIYLGELLELADRNRDVYFTI-IQSSGRFFSSGADFKGIAKAQGDDTNK   81 (266)
T ss_dssp             BTTEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHHCTTCCEEE-EECBTTBSBCCBCHHHHHC-------C
T ss_pred             CCeEEEEEECCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EeccccccccchhHHHHHhcccccccc
Confidence            467999999999999999998 789999999999999999999999999755 5899999999999999865321     


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccc
Q psy9060         137 -----ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDK  211 (366)
Q Consensus       137 -----~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~  211 (366)
                           ......+...++.++..+.++||||||+|||+|+|||++|+++||+|||++++ +                    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~-~--------------------  140 (266)
T d1pjha_          82 YPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-V--------------------  140 (266)
T ss_dssp             CSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT-C--------------------
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcc-c--------------------
Confidence                 12233445567788999999999999999999999999999999999997653 2                    


Q ss_pred             cccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         212 KTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       212 ~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                        +|++||+++|++|++|++++|+|++|..+|++|+++|+.++++||+++||||+|+++
T Consensus       141 --~~~~pe~~lGl~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~  197 (266)
T d1pjha_         141 --YLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNM  197 (266)
T ss_dssp             --EEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCC
T ss_pred             --cccccccccccccccccccccccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCc
Confidence              899999999999999999999999999999999999999999999999999999986

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=2.1e-42  Score=321.61  Aligned_cols=201  Identities=26%  Similarity=0.377  Sum_probs=180.7

Q ss_pred             ceeEEE--eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHH
Q psy9060          64 HFKEKA--VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQV  140 (366)
Q Consensus        64 ~i~~~~--~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~  140 (366)
                      .+.++.  .+||++|+||||+  .|++|.+|+++|.++++.+.+|+++++||| +|.+ +.||+|+|++++... .....
T Consensus         3 ~ilve~~~~~gIa~itln~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl-~g~g~~~Fs~G~Dl~~~~~~-~~~~~   78 (249)
T d1sg4a1           3 RVLVEPDAGAGVAVMKFKNPP--VNSLSLEFLTELVISLEKLENDKSFRGVIL-TSDRPGVFSAGLDLTEMCGR-SPAHY   78 (249)
T ss_dssp             SEEEEEETTTTEEEEEECCTT--TTEECHHHHHHHHHHHHHHHHCTTCCEEEE-EESSTEESCCEECGGGGSSC-CHHHH
T ss_pred             cEEEEEECCCCEEEEEECCCC--cCCCCHHHHHHHHHHHHHHHhCCCccEEEE-EeccceeEeccccccccccc-ccccc
Confidence            455555  4789999999996  599999999999999999999999997665 5655 579999999998653 45666


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccch
Q psy9060         141 KQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEV  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  220 (366)
                      ..+.+.+++++.++.++|||+||+|||+|+|||++|+++||+||++++++.                      .+++||+
T Consensus        79 ~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f----------------------~~~~pe~  136 (249)
T d1sg4a1          79 AGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRY----------------------CIGLNET  136 (249)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTC----------------------CBSCCGG
T ss_pred             cccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccc----------------------ccccccc
Confidence            777788899999999999999999999999999999999999999999854                      5689999


Q ss_pred             hccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy9060         221 MLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASG  300 (366)
Q Consensus       221 ~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~  300 (366)
                      ++|++|++|++++|++++|..++++++++|+++++++|+++||||+|+|+             +++.+.+.+++++++..
T Consensus       137 ~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~-------------~~l~~~a~~~a~~l~~~  203 (249)
T d1sg4a1         137 QLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE-------------EQVQSTALSAIAQWMAI  203 (249)
T ss_dssp             GGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-------------GGHHHHHHHHHHHHHTS
T ss_pred             ccccccccccccccccccccccccccccccccccHHHHHhhccccccCCh-------------HHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999987             67889999999999987


Q ss_pred             ccc
Q psy9060         301 KLK  303 (366)
Q Consensus       301 ~~~  303 (366)
                      +..
T Consensus       204 ~~~  206 (249)
T d1sg4a1         204 PDH  206 (249)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            643

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-41  Score=318.53  Aligned_cols=209  Identities=29%  Similarity=0.452  Sum_probs=179.3

Q ss_pred             CcceeEEE-eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCC----
Q psy9060          62 TKHFKEKA-VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKT----  136 (366)
Q Consensus        62 ~~~i~~~~-~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~----  136 (366)
                      |+++.++. +++|++||||||+ +.|+||.+|+.+|.++++.+++|+++++|| ++|.++.||+|+|++++.....    
T Consensus         2 y~~l~~~~~~~~I~~itlnrP~-~~Nals~~m~~el~~~l~~~~~d~~v~~vv-ltg~~~~F~aG~dl~~~~~~~~~~~~   79 (275)
T d1dcia_           2 YESIQVTSAQKHVLHVQLNRPE-KRNAMNRAFWRELVECFQKISKDSDCRAVV-VSGAGKMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGG-GTTCBCHHHHHHHHHHHHHHHTCTTCCEEE-EEESTTCSBCCBCHHHHHHHHTSCCC
T ss_pred             CceEEEEEccCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EeccccccccCccHHHhhhccccccc
Confidence            67787754 7889999999998 789999999999999999999999999755 5889999999999998764211    


Q ss_pred             --H----HHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhccc
Q psy9060         137 --A----DQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKD  210 (366)
Q Consensus       137 --~----~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~  210 (366)
                        .    ..........+.++..+.++|||+||+|||+|+|||++|+++|||||+++++                     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a---------------------  138 (275)
T d1dcia_          80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA---------------------  138 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTC---------------------
T ss_pred             ccccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCc---------------------
Confidence              1    1123344556788999999999999999999999999999999999999987                     


Q ss_pred             ccccccccchhccCCCChhHHhHHhhhcCHH-HHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHH
Q psy9060         211 KKTGLGLPEVMLGLLPGAGGTQRLPKLTALP-NVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEV  289 (366)
Q Consensus       211 ~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~-~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~  289 (366)
                         +|++||+++|++|++|+++++++++|.. .+++++++|+.++++||+++||||+|+|+.            +.+.+.
T Consensus       139 ---~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~------------~~l~~~  203 (275)
T d1dcia_         139 ---FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDK------------DVMLNA  203 (275)
T ss_dssp             ---EEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSH------------HHHHHH
T ss_pred             ---cccchhcccccccccccccccccccccccccccccccccccchhhhccCCCceeeeehh------------hhhhhc
Confidence               8999999999999999999999999955 456899999999999999999999999861            456778


Q ss_pred             HHHHHHHHhcCcc-cccccC
Q psy9060         290 AVNTASQLASGKL-KINRIK  308 (366)
Q Consensus       290 a~~~a~~la~~~~-~~~~~~  308 (366)
                      +.++++.|++.++ .+...|
T Consensus       204 ~~~~a~~i~~~~p~a~~~~K  223 (275)
T d1dcia_         204 AFALAADISSKSPVAVQGSK  223 (275)
T ss_dssp             HHHHHHHHHHSCHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHH
Confidence            8899999988754 344444

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.7e-41  Score=314.81  Aligned_cols=197  Identities=29%  Similarity=0.451  Sum_probs=175.3

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhc--CCHHHHHHH
Q psy9060          66 KEKAVGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAAC--KTADQVKQI  143 (366)
Q Consensus        66 ~~~~~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~--~~~~~~~~~  143 (366)
                      .++ +|+|++||||||+ +.|++|.+|+.+|.++++.+..|+++++|| ++|.|+.||+|+|++++...  .........
T Consensus         3 ~ie-~G~va~Itlnrp~-~~Nal~~~~~~el~~~l~~~~~d~~v~~vv-l~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~   79 (253)
T d1uiya_           3 QVE-KGHVAVVFLNDPE-RRNPLSPEMALSLLQALDDLEADPGVRAVV-LTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             EEE-CSSEEEEEECCGG-GTCCCCHHHHHHHHHHHHHHHHCTTCCEEE-EEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             EEe-eCCEEEEEEcCCC-cCCCCCHHHHHHHHHHHHHHHhCCCceEEE-EecccccccccchhHHhhhccccCcccccch
Confidence            444 3679999999998 789999999999999999999999999755 58999999999999987653  334445556


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhcc
Q psy9060         144 SKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLG  223 (366)
Q Consensus       144 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~G  223 (366)
                      ....+.++..+.++|||+||+|||+|+|||++|+++||+||+++++                        +|++||.++|
T Consensus        80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a------------------------~~~~~e~~~g  135 (253)
T d1uiya_          80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEA------------------------RLGYTEVKIG  135 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTC------------------------EEECCHHHHT
T ss_pred             hhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhh------------------------HHhhhhcccc
Confidence            6677889999999999999999999999999999999999999987                        9999999999


Q ss_pred             CCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCccc
Q psy9060         224 LLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKLK  303 (366)
Q Consensus       224 l~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~~  303 (366)
                      ++| +|++++|++++|..+|++|+++|++++++||+++||||+|+++             +++.+.+.++++++++.+..
T Consensus       136 ~~~-~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-------------~~~~~~a~~~a~~~~~~~~~  201 (253)
T d1uiya_         136 FVA-ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPP-------------GKALEEAKALAEEVAKNAPT  201 (253)
T ss_dssp             CCC-HHHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-------------TCHHHHHHHHHHHHHHSCHH
T ss_pred             ccc-ccchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCcccccc-------------cccchhHHHHHHhhcccchH
Confidence            887 5678899999999999999999999999999999999999987             56788899999999887643

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=318.04  Aligned_cols=203  Identities=28%  Similarity=0.512  Sum_probs=177.0

Q ss_pred             eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCC-CcEEcCCCcchhhhcCCHHHHHHHHHHHH
Q psy9060          70 VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKP-GCFIAGADISMLAACKTADQVKQISKSGQ  148 (366)
Q Consensus        70 ~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  148 (366)
                      +++|++||||||+ +.|++|.+|+.+|.++++.+..|+++++||| +|.| +.||+|.|++++... .......+...++
T Consensus        13 ~~gI~~itlnrp~-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl-~g~g~~~f~~g~d~~~~~~~-~~~~~~~~~~~~~   89 (266)
T d1hzda_          13 NRGIVVLGINRAY-GKNSLSKNLIKMLSKAVDALKSDKKVRTIII-RSEVPGIFCAGADLKERAKM-SSSEVGPFVSKIR   89 (266)
T ss_dssp             GTTEEEEEECCGG-GTTCBCTTHHHHHHHHHHHHHHCSSCSEEEE-EESBTEEEECCBCHHHHTTS-CHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCC-CCCCCCHHHHHHHHHHHHHHHhCCCcceEEE-eccccccccccccccccccc-cchhhhhhhhHHH
Confidence            4679999999998 7899999999999999999999999997665 5654 689999999988764 3455566777888


Q ss_pred             HHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060         149 QILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA  228 (366)
Q Consensus       149 ~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~  228 (366)
                      +++..+.++||||||+|||+|+|||++|+++||+||+++++                        +|++||+++|++|++
T Consensus        90 ~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a------------------------~f~~pe~~~G~~p~~  145 (266)
T d1hzda_          90 AVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA------------------------KMGLVETKLAIIPGG  145 (266)
T ss_dssp             HHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTC------------------------EEECCGGGGTCCCCS
T ss_pred             HHHHHHhcCCcccccccccccccccceeccccceeeecCCc------------------------EEeecccceeecCCc
Confidence            99999999999999999999999999999999999999987                        999999999999999


Q ss_pred             hHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCcc-ccccc
Q psy9060         229 GGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEERTMEYLEEVAVNTASQLASGKL-KINRI  307 (366)
Q Consensus       229 gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~~~~~l~~~a~~~a~~la~~~~-~~~~~  307 (366)
                      |++++|++++|..+|++++++|+.++|+||+++||||+|||+     +++.    +.+.+.|.+++++++..+. .+..+
T Consensus       146 g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-----~~l~----~~~~~~a~~~a~~i~~~~p~a~~~~  216 (266)
T d1hzda_         146 GGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ-----NQEG----DAAYRKALDLAREFLPQGPVAMRVA  216 (266)
T ss_dssp             SHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECC-----CTTS----CHHHHHHHHHHHTTTTSCHHHHHHH
T ss_pred             cceeeehhhhHHHHHHhhhccCCccCHHHhhcccccccccCh-----hhhh----hHHHHHHHHHHHhcccCChHHHHHH
Confidence            999999999999999999999999999999999999999997     1211    3466777778888776653 34444


Q ss_pred             C
Q psy9060         308 K  308 (366)
Q Consensus       308 ~  308 (366)
                      |
T Consensus       217 K  217 (266)
T d1hzda_         217 K  217 (266)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3e-40  Score=314.21  Aligned_cols=205  Identities=17%  Similarity=0.293  Sum_probs=169.8

Q ss_pred             CCcceeEEE--eCCEEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeC-------CCcEEcCCCcchh
Q psy9060          61 STKHFKEKA--VGDVLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGK-------PGCFIAGADISML  131 (366)
Q Consensus        61 ~~~~i~~~~--~~~Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~-------g~~F~aG~Dl~~~  131 (366)
                      .++.+.|++  +++|++||||||+ +.|+||.+|+.+|.++++.+++|+++++||| +|.       |+.||+|.|++..
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~-~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVl-tg~~~~f~~gG~~f~ag~Dl~~~   93 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPE-VRNAFRPHTVDELYRVLDHARMSPDVGVVLL-TGNGPSPKDGGWAFCSGGDQRIR   93 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGG-GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE-EECCCCTTTCCCEEECCC-----
T ss_pred             CCcceEEEEEccCCEEEEEECCCC-cCCCCCHHHHHHHHHHHHHHHhCCCccEEEE-ecCCCcccchhhhhhhcchhhhh
Confidence            456788876  5899999999999 7899999999999999999999999997665 664       5679999999866


Q ss_pred             hhcCC----------HHHHHHHHHHHHHHHHHHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCCccCCCchhhhhh
Q psy9060         132 AACKT----------ADQVKQISKSGQQILSEIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALA  201 (366)
Q Consensus       132 ~~~~~----------~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~  201 (366)
                      .....          .+........++.++..|.++||||||+|||+|+|||++|+++||+||+++++ +          
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~-~----------  162 (297)
T d1q52a_          94 GRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY-A----------  162 (297)
T ss_dssp             ------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-C----------
T ss_pred             cccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhcccccccc-c----------
Confidence            43211          01112223346788899999999999999999999999999999999998764 2          


Q ss_pred             hhhhhhcccccccccccchhccCCCChhHHhHHhhhcCHHHHHHHHhcCCCcCHHHHHHcCCcceecCCCCCCCCCcchh
Q psy9060         202 CHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPKLTALPNVLDMTLTGKTLKADKAKKMGIVDQLVEPLGPGLNHPEER  281 (366)
Q Consensus       202 ~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r~~G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~~~~~~~~~~~~  281 (366)
                                  +|++||+++|++|++|++++|+|++|..++++++++|+.++++||+++||||+|+|+           
T Consensus       163 ------------~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-----------  219 (297)
T d1q52a_         163 ------------RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-----------  219 (297)
T ss_dssp             ------------EEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECG-----------
T ss_pred             ------------cceeeeeccccccccccccccccccCccceeeccccccccchHhhhhhccccccCch-----------
Confidence                        699999999999999999999999999999999999999999999999999999997           


Q ss_pred             hHHHHHHHHHHHHHHHhcCccc
Q psy9060         282 TMEYLEEVAVNTASQLASGKLK  303 (366)
Q Consensus       282 ~~~~l~~~a~~~a~~la~~~~~  303 (366)
                        +++++.+.+++++++..+..
T Consensus       220 --~el~~~~~~~a~~l~~~~~~  239 (297)
T d1q52a_         220 --AELETVGLQWAAEINAKSPQ  239 (297)
T ss_dssp             --GGHHHHHHHHHHHHHTSCHH
T ss_pred             --HHhhHHHHHHhhhhccCCHH
Confidence              67889999999999988643

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.66  E-value=3.5e-09  Score=99.16  Aligned_cols=59  Identities=37%  Similarity=0.615  Sum_probs=56.3

Q ss_pred             CCCCCchHHHHHHHHHhhhccCCccchHHHHHHHhhhcCChhhhhhhhhhhhhhhhccc
Q psy9060           2 SGGLYPAPLKILDVVRTGIEKGPSAGYEAEAEGFSQLAMTPQSKGLMGLFRAQTECKKN   60 (366)
Q Consensus         2 ~~~~yPAp~~il~~v~~g~~~~~~~gL~~E~~~fa~L~~speskal~~~F~~~~~~kk~   60 (366)
                      +++|||||.+++++|+++.+.++++||..|+++|.+|+.||+++++++.||.+++++|.
T Consensus       245 ~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~  303 (310)
T d1wdka4         245 AGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKK  303 (310)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Confidence            57899999999999999999999999999999999999999999999999999988764

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=4.6e-05  Score=64.89  Aligned_cols=134  Identities=17%  Similarity=0.224  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHhh---cCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          88 LNSEVMSEIQSILRRIQ---SDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~---~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ++.++..++...+-.++   .++.+. +.| ...|      +|+.                .+..++..+..++.|+...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~I-nS~G------G~v~----------------~gl~i~d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYI-NSPG------GSIS----------------AGMAIYDTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEE-EECC------BCHH----------------HHHHHHHHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEe-eCCC------CCHH----------------HHHHHHHHHHhhccceeee
Confidence            56777777777654443   234454 333 3333      3321                2246677788899999999


Q ss_pred             eccccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHH-h---------
Q psy9060         165 ISGSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGT-Q---------  232 (366)
Q Consensus       165 v~G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~-~---------  232 (366)
                      +.|.|.+.|.-+.+++|  .|++.+++                        +|-+-+...|. .|-... .         
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s------------------------~~miH~~~~~~-~G~~~~i~~~~~~l~~~  132 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHA------------------------RILMHQPLGGV-TGSAADIAIQAEQFAVI  132 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTC------------------------EEECCCC-----------CHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCch------------------------HhhcCCCchhc-CCccHHHHHHHHHHHHH
Confidence            99999999999999999  89999987                        55554443332 111000 0         


Q ss_pred             ------HHhhhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         233 ------RLPKLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       233 ------~l~r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                            .+.+..  ....-.+++-.-.-++|+||+++||||+|+..
T Consensus       133 ~~~i~~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         133 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence                  001111  22233455666677899999999999999864

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=6.7e-05  Score=63.95  Aligned_cols=132  Identities=16%  Similarity=0.204  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHhhcC---CCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          88 LNSEVMSEIQSILRRIQSD---SSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~d---~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ++.++...+...+..++.+   +.+.  +.+...|      +|+                ..+..++..|..++.|+...
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~--l~InS~G------G~v----------------~~g~~i~d~i~~~~~~v~tv   80 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIY--LYINSPG------GVI----------------TAGMSIYDTMQFIKPDVSTI   80 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE--EEEEECC------BCH----------------HHHHHHHHHHHHSSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceE--EEEeCCC------ccH----------------HHHHHHHHHHHhCCCCEEEE
Confidence            5677788887777766643   2343  2333333      332                12356778888899999999


Q ss_pred             eccccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHH--------
Q psy9060         165 ISGSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRL--------  234 (366)
Q Consensus       165 v~G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l--------  234 (366)
                      +.|.|.+.|.-+.+++|  .|++.+++                        +|-+-+...|..   |...-+        
T Consensus        81 ~~G~aaS~a~~I~~ag~~~~R~~~~ns------------------------~~miH~~~~~~~---G~~~~i~~~~~~~~  133 (183)
T d1yg6a1          81 CMGQAASMGAFLLTAGAKGKRFCLPNS------------------------RVMIHQPLGGYQ---GQATDIEIHAREIL  133 (183)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTC------------------------EEEECCCEEEEE---EEHHHHHHHHHHHH
T ss_pred             EEEEeHHHHHHHHHcCCCCceeeCCCc------------------------eEEecccccccc---cCHHHHHHHHHHHH
Confidence            99999999999999998  79999987                        454444443321   111111        


Q ss_pred             ----------hhhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         235 ----------PKLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       235 ----------~r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                                ....  ....-.+++-.-.-++|+||+++||||+|+..
T Consensus       134 ~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         134 KVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence                      1111  22223344433344799999999999999964

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.64  E-value=0.00019  Score=61.58  Aligned_cols=132  Identities=18%  Similarity=0.217  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHHHHHhhc--CCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060          88 LNSEVMSEIQSILRRIQS--DSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI  165 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~--d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav  165 (366)
                      +|.++..++...+..++.  .+.|. +.| ...|      +|+                ..+..++..+..++.|+...+
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~I-NS~G------G~v----------------~~g~ai~d~i~~~~~~v~tv~   82 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYI-NSPG------GSI----------------NEGLAILDIFNYIKSDIQTIS   82 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEE-EECC------BCH----------------HHHHHHHHHHHHSSSCEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEE-eCch------hhh----------------hHHHHHHHHHHhhCCceEEEE
Confidence            677777777776666653  23454 333 3333      332                123567777888899999999


Q ss_pred             ccccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhH----------
Q psy9060         166 SGSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQR----------  233 (366)
Q Consensus       166 ~G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~----------  233 (366)
                      .|.|.+.|.-++++++  .|++.+++                        +|-+.+...|..   |...-          
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~pns------------------------~imiH~~s~~~~---G~~~di~~~~~~l~~  135 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSLPNC------------------------RIMIHQPLGNAF---GHPQDIEIQTKEILY  135 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTC------------------------EEESSCTTCSCC-----------CHHHHHH
T ss_pred             eccccchhHHHHHhCCCCccccCCCc------------------------EEEEcccccccC---CcHHHHHHHHHHHHH
Confidence            9999999999999988  59999876                        566655554431   21111          


Q ss_pred             --------HhhhcC--HHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         234 --------LPKLTA--LPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       234 --------l~r~~G--~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                              +....|  ...-.+.+-.-.-++|+||+++||||+|+++
T Consensus       136 ~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         136 LKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence                    111122  1222334444455899999999999999965

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.56  E-value=0.00033  Score=60.17  Aligned_cols=132  Identities=18%  Similarity=0.232  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHhh---cCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          88 LNSEVMSEIQSILRRIQ---SDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~---~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ++..+...+...+..++   .+..+. +.| ...|+.+                      ..+..++..+..++.|+...
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~I-nS~GG~v----------------------~~g~~i~d~i~~~~~~V~tv   90 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIH-MYI-NSPGGVV----------------------TAGLAIYDTMQYILNPICTW   90 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEE-EECCBCH----------------------HHHHHHHHHHHHSCSCEEEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEE-EEe-ecCcccH----------------------HHHHHHHHHHHhhcCceEEE
Confidence            56677777766555554   334565 333 4444322                      12346777888899999999


Q ss_pred             eccccchhHHHHHhhcc--EEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHh-------
Q psy9060         165 ISGSCLGGGLEVALACH--YRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLP-------  235 (366)
Q Consensus       165 v~G~a~GgG~elalacD--~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~-------  235 (366)
                      +.|.|.+.|.-+.+++|  .|++.+++                        +|-+-+...|..   |-..-+.       
T Consensus        91 ~~G~aaS~a~~il~aG~~g~R~~~pns------------------------~~miHq~~~~~~---G~~~di~~~~~el~  143 (193)
T d1tg6a1          91 CVGQAASMGSLLLAAGTPGMRHSLPNS------------------------RIMIHQPSGGAR---GQATDIAIQAEEIM  143 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTC------------------------EEEECCCCCCCC---SSHHHHHHHHHHHH
T ss_pred             EccchHHHHHHHhhcCccCccccCccc------------------------HHHhcCCccCCC---cCHHHHHHHHHHHH
Confidence            99999999999999998  59999987                        555554444431   1111111       


Q ss_pred             -----------hhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         236 -----------KLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       236 -----------r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                                 ...  ......+++-.-.-++|+||+++||||+|+..
T Consensus       144 ~~~~~i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         144 KLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEccC
Confidence                       111  22233344444444899999999999999964

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.55  E-value=0.00041  Score=59.42  Aligned_cols=135  Identities=14%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHHhhc-C--CCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          88 LNSEVMSEIQSILRRIQS-D--SSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        88 l~~~~~~eL~~al~~~~~-d--~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ++.++...+...+..++. |  ..+.  +.+...|+.+.                      .+..++..+..++.|+...
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I~--l~InS~GG~v~----------------------~glai~d~i~~~~~~v~t~   88 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDIY--LYVNTPGGSVS----------------------AGLAIVDTMNFIKADVQTI   88 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEE--EEEEECCBCHH----------------------HHHHHHHHHHHSSSCEEEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCcee--eeecCCCCCHH----------------------HHHHHHHHHHhcCcceEEE
Confidence            577777777776665542 2  2344  33344443221                      2356777888899999999


Q ss_pred             eccccchhHHHHHhh--ccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHh------HH--
Q psy9060         165 ISGSCLGGGLEVALA--CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQ------RL--  234 (366)
Q Consensus       165 v~G~a~GgG~elala--cD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~------~l--  234 (366)
                      +.|.|.+.|.-+.++  |+.|++.+++                        ++-+-+...|.........      -+  
T Consensus        89 ~~G~aaS~as~il~aG~~g~R~~~pns------------------------~~miHq~~~~~~G~~~~~~~~~~~~el~~  144 (192)
T d1y7oa1          89 VMGMAASMGTVIASSGAKGKRFMLPNA------------------------EYMIHQPMGGTGGGTQQTDMAIAPEHLLK  144 (192)
T ss_dssp             EEEEEETHHHHHHTTSCTTCEEECTTC------------------------EEECCCCC--------------CHHHHHH
T ss_pred             eccccCCccceeeeecCCCccccchHH------------------------HHHhhcccccccccchhHHHHHHHHHHHH
Confidence            999999999888776  6799999987                        4444444333321110000      01  


Q ss_pred             ---------hhhc--CHHHHHHHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         235 ---------PKLT--ALPNVLDMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       235 ---------~r~~--G~~~a~~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                               ....  ...+-.+.+-.-.-++|+||+++||||+|+..
T Consensus       145 ~~~~i~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         145 TRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence                     1111  23334455666677999999999999999863

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.41  E-value=0.0037  Score=55.57  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++-.|.-- ..-+++....+.+..+.+.+.++. +-.|.+..      |+|+.+.+     .......+.+.+..+ .
T Consensus        91 v~v~a~Dftv-~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~------sgG~r~~e-----g~~~l~~~~~~~~~~-~  156 (253)
T d1on3a1          91 VHAASQDFTV-MGGSAGETQSTKVVETMEQALLTG-TPFLFFYD------SGGARIQE-----GIDSLSGYGKMFFAN-V  156 (253)
T ss_dssp             EEEEEECTTT-GGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE------ECSBCGGG-----THHHHHHHHHHHHHH-H
T ss_pred             chhhhchhhh-hcccceecccchhhhhHHHHhhcC-CCeEEEEe------cCCCcccc-----cceeccccceehHHH-H
Confidence            4444444333 667899999999999999888754 33333332      34444433     111222222222222 2


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                      .+.. ..|+|+++.|+|+||+.....+||++|+.+++
T Consensus       157 ~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a  192 (253)
T d1on3a1         157 KLSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKA  192 (253)
T ss_dssp             HHTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTC
T ss_pred             HHhc-cceEEEEEecCcccceeeccchhhheeccccc
Confidence            3322 48999999999999999999999999999875

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.07  E-value=0.0088  Score=53.17  Aligned_cols=101  Identities=17%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++..|..- +.-+++....+.+..+++.+.++. +-. |.+..++     |+.+.+-.     .....+.+.+ ....
T Consensus        90 v~v~a~Dftv-~gGS~g~~~~~K~~r~~e~A~~~~-lPl-I~l~dsg-----Garm~e~~-----~~~~~~~~~~-~~~~  155 (258)
T d1xnya1          90 VAVFSQDFTV-FGGALGEVYGQKIVKVMDFALKTG-CPV-VGINDSG-----GARIQEGV-----ASLGAYGEIF-RRNT  155 (258)
T ss_dssp             EEEEEECTTS-GGGCBCHHHHHHHHHHHHHHHHHT-CCE-EEEECCC-----SBCGGGTH-----HHHHHHHHHH-HHHH
T ss_pred             EEEEechhhh-hcCccchhhHHHHHHHHHHHHHcC-Cce-EEEecCC-----CcccCccc-----ccccchhHHH-HHHH
Confidence            4444555443 667899999999999999888754 343 3344333     33443211     1111121111 1122


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD  188 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~  188 (366)
                      .+ ....|+|+++.|+|.||+......||++|+.+.
T Consensus       156 ~~-s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~  190 (258)
T d1xnya1         156 HA-SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQ  190 (258)
T ss_dssp             HT-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEETT
T ss_pred             HH-cCCCCEEEEEcCCcChhHHHHHHhccchhhccc
Confidence            22 345899999999999999999988999888864

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.018  Score=51.12  Aligned_cols=101  Identities=19%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |.++-.|.-- +.-+++....+.+..+.+.+.++. +-.|.+ ..     |+|+.+.+-    . .....+... .... 
T Consensus        91 v~v~a~Dft~-~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l-~d-----sgGar~~eg----~-~~~~~~~~~-~~~~-  155 (258)
T d2a7sa1          91 VCIFSQDATV-FGGSLGEVYGEKIVKVQELAIKTG-RPLIGI-ND-----GAGARIQEG----V-VSLGLYSRI-FRNN-  155 (258)
T ss_dssp             EEEEEECTTS-GGGCBCHHHHHHHHHHHHHHHHHT-CCEEEE-EC-----CCSBCGGGC----T-HHHHHHHHH-HHHH-
T ss_pred             EEEecccceE-eCCccchhhhhHHHHHHHHHHhcC-CceEEE-ec-----cCCcccccc----c-ccccchhhH-HHHH-
Confidence            4444444433 667899999999999999888764 343333 32     234444331    1 111112121 1222 


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKD  188 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~  188 (366)
                      .......|+|++|.|+|.||+......||++|+.+.
T Consensus       156 ~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~  191 (258)
T d2a7sa1         156 ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ  191 (258)
T ss_dssp             HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBT
T ss_pred             HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecC
Confidence            223456899999999999999999999999998765

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0032  Score=57.78  Aligned_cols=137  Identities=13%  Similarity=0.182  Sum_probs=90.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy9060          86 NSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI  165 (366)
Q Consensus        86 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav  165 (366)
                      ..++++-.+.-.+.++.++.-. +- +|.+-..++++ .|.+          .+.....+.+...+..+.++..|+|+.|
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~~-~P-ii~~vDtpG~~-~g~~----------~E~~g~~~~~a~~~~~~~~~~vP~i~vv  196 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERFK-MP-IITFIDTPGAY-PGVG----------AEERGQSEAIARNLREMSRLGVPVVCTV  196 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CC-EEEEEEESCSC-CSHH----------HHHTTHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHcC-cc-eEEEEecCccc-CCcc----------cccccHHHHHHHHHHHHHhCCCceEEEE
Confidence            3567777777777777776542 33 34444444433 3322          2222345667788899999999999999


Q ss_pred             ccccchhHHHHHhhccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhh-hcCHHHHH
Q psy9060         166 SGSCLGGGLEVALACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK-LTALPNVL  244 (366)
Q Consensus       166 ~G~a~GgG~elalacD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r-~~G~~~a~  244 (366)
                      -|.+.|||......+|.+.+.+++                        +++       ++.+-|....|-+ .--...|.
T Consensus       197 ~g~g~~gga~a~~~~d~v~m~~~a------------------------~~s-------vispEg~AsILwkd~~~a~eaA  245 (316)
T d2f9ya1         197 IGEGGSGGALAIGVGDKVNMLQYS------------------------TYS-------VISPEGCASILWKSADKAPLAA  245 (316)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTC------------------------EEE-------SSCHHHHHHHHSSCSTTHHHHH
T ss_pred             EhhhhchhhhhhhhhhHHHHHhhh------------------------HHh-------hccchhhhhHhhccchhhcchH
Confidence            999999999888889999999887                        443       2222333333322 21222222


Q ss_pred             HHHhcCCCcCHHHHHHcCCcceecCC
Q psy9060         245 DMTLTGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       245 ~l~ltG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      +    -..+++++.+++|+||+|++.
T Consensus       246 e----alklta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         246 E----AMGIIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             H----HHTCSHHHHHTTTSCSCCCCC
T ss_pred             H----HHhhhhHHHHHcCchhhcccC
Confidence            2    234799999999999999964

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.043  Score=48.28  Aligned_cols=102  Identities=22%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |+++..| +.-..-+++....+.+..+++.+.+.. +-.|.+ ..     |+|..+.+-     ......+.+.+. .. 
T Consensus        88 v~v~a~D-~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~-~d-----sgG~r~~e~-----~~~l~~~~~~~~-~~-  152 (251)
T d1vrga1          88 VAVFSQD-FTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGI-ND-----SGGARIQEG-----VDALAGYGEIFL-RN-  152 (251)
T ss_dssp             EEEEEEC-TTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEE-EE-----ECSBCGGGT-----HHHHHHHHHHHH-HH-
T ss_pred             EEEeeeh-hhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEE-Ec-----CCCcccccc-----ccccccchHHHH-HH-
Confidence            4444444 333567888888899999888887654 333333 33     244444331     111122222221 12 


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                      ....-..|+|++|.|+|.||+......||++|+.+..
T Consensus       153 ~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~  189 (251)
T d1vrga1         153 TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQT  189 (251)
T ss_dssp             HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTT
T ss_pred             HHHCCCCCEEEEEccCccccceehhhhCceEEEEccc
Confidence            2234568999999999999999999999999988753

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.64  E-value=0.005  Score=55.71  Aligned_cols=101  Identities=10%  Similarity=0.011  Sum_probs=59.4

Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhh-cCCHHHHHHHHHHHHHHHHHHHc
Q psy9060          78 LDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAA-CKTADQVKQISKSGQQILSEIES  156 (366)
Q Consensus        78 lnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~i~~  156 (366)
                      -|.+.-+.-+++....+.+..+++.+.+.. += +|.+...+     |+.+.+-.. .....   ...+.+ .-+..+..
T Consensus       110 a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP-~I~l~ds~-----Ga~~~~~~e~~~~~~---~~g~~~-~~~a~ls~  178 (287)
T d1pixa2         110 ASDNKKLAGAWVPGQAECLLRASDTAKTLH-VP-LVYVLNCS-----GVKFDEQEKVYPNRR---GGGTPF-FRNAELNQ  178 (287)
T ss_dssp             EECTTTTTTEECTTHHHHHHHHHHHHHHHT-CC-EEEEECCC-----EECGGGHHHHSSSTT---STTHHH-HHHHHHHH
T ss_pred             EeccccccccchhhHHHHHHHHHHhhhhcC-CC-EEEEecCC-----cccCCcchhhccchh---hHHHHH-HHHHHHhh
Confidence            333332456788888888888888777643 34 34333333     333321110 00000   000111 11234555


Q ss_pred             CCCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         157 SPKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       157 ~~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                      ..+|+|++|.|.|.|||...+++||++++.+++
T Consensus       179 ~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a  211 (287)
T d1pixa2         179 LGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKA  211 (287)
T ss_dssp             TTCCEEEEECSEEETHHHHHHHSSSEEEEETTC
T ss_pred             cCCCeEEEecCCccccceeccccceeEEecCCe
Confidence            678999999999999998888888888888776

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.014  Score=52.05  Aligned_cols=103  Identities=16%  Similarity=0.189  Sum_probs=63.6

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |+++-.|--- ..-+++....+.+..+++.+.++. +-.|.+ +.     |.|+.+.+-     ......+. .......
T Consensus        98 v~v~a~Dftv-~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~-~~-----sgG~r~~e~-----~~sl~~~~-~~~~~~~  163 (263)
T d2f9yb1          98 VVAAAFEFAF-MGGSMGSVVGARFVRAVEQALEDN-CPLICF-SA-----SGGARMQEA-----LMSLMQMA-KTSAALA  163 (263)
T ss_dssp             CBEEEECTTS-TTTCBCTHHHHHHHHHHHHHHHHT-CCEEEE-EE-----ESSBCGGGT-----HHHHHHHH-HHHHHHH
T ss_pred             EEEEeeeehh-hccccccchhhHHhHHHHHHHHcC-CCeEEE-ec-----CCCcccccc-----cchhhcch-hHHHHHH
Confidence            4444444433 567888888999999999887654 333333 32     344444331     11112222 2223334


Q ss_pred             HHHcCCCCEEEEeccccchhHHH-HHhhccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLE-VALACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~e-lalacD~ria~~~a  189 (366)
                      .+.....|+|+++.|+|.||+.. +++++|++++.+.+
T Consensus       164 ~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s  201 (263)
T d2f9yb1         164 KMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKA  201 (263)
T ss_dssp             HHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTC
T ss_pred             HHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecce
Confidence            45567789999999999999864 67777888877655

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.026  Score=50.15  Aligned_cols=103  Identities=17%  Similarity=0.275  Sum_probs=72.3

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++| -|+|......++.+-.+...+.++...... += +|.+...+ .|..|.+          .+.....+.+.+++.
T Consensus        69 vgvi-an~~~~~~G~~~~~~a~Kaa~fi~lc~~~~-iP-li~l~Dtp-Gf~~G~~----------~E~~g~~~~ga~~~~  134 (264)
T d1vrga2          69 VGIV-ANQPSVLAGVLDIDSSDKAARFIRFLDAFN-IP-ILTFVDTP-GYLPGVA----------QEHGGIIRHGAKLLY  134 (264)
T ss_dssp             EEEE-EECTTSGGGCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEEC-CBCCCHH----------HHHTTHHHHHHHHHH
T ss_pred             EEEE-eccccccccchhhhhHHHHHHHHHHHHHhC-Cc-eEEEeecc-cccccHH----------HHHHhHHHHHHHHHH
Confidence            4444 455553456799999999999888887643 45 45555544 3656543          223345677889999


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHh----hccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVAL----ACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elal----acD~ria~~~a  189 (366)
                      .+.++..|.|..|-|.+.|+|.....    .+|++++-+++
T Consensus       135 a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a  175 (264)
T d1vrga2         135 AYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSA  175 (264)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTC
T ss_pred             HHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccce
Confidence            99999999999999999998874332    47777776665

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.37  E-value=0.035  Score=49.51  Aligned_cols=103  Identities=20%  Similarity=0.344  Sum_probs=72.3

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++| -|+|......++.+-.+...+.++...... += +|++...+ .|..|.+          .+.....+.+..++.
T Consensus        72 vgvi-an~~~~~~G~~~~~~~~Ka~rfi~lc~~~~-iP-lv~l~dtp-Gf~~G~~----------~E~~g~~~~ga~~~~  137 (271)
T d2a7sa2          72 VGIV-ANQPTHFAGCLDINASEKAARFVRTCDCFN-IP-IVMLVDVP-GFLPGTD----------QEYNGIIRRGAKLLY  137 (271)
T ss_dssp             EEEE-EECTTTGGGCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEEC-CBCCCHH----------HHHHCHHHHHHHHHH
T ss_pred             EEEE-eccccccCCCcCHHHHHHHHHHHHHHHHhC-Cc-eEEeechh-hhhhhcc----------HHHhhHHHHHHHHHH
Confidence            4444 455542346899999999999998887643 45 45555544 3666543          233345678889999


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHh----hccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVAL----ACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elal----acD~ria~~~a  189 (366)
                      .+.++..|.|..|-|.+.|||.....    .+|++++-+++
T Consensus       138 a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A  178 (271)
T d2a7sa2         138 AYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTA  178 (271)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTC
T ss_pred             HHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecce
Confidence            99999999999999999998765432    36777777766

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.36  E-value=0.028  Score=49.93  Aligned_cols=103  Identities=17%  Similarity=0.344  Sum_probs=72.1

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++| -|+|......++.+-.+...+.++...... += +|++...++ |..|.+          .+.....+.+.+++.
T Consensus        67 vgvi-a~~~~~~~G~~~~~~a~Ka~~fi~lc~~~~-iP-li~l~d~pG-f~~G~~----------~E~~g~~~~ga~~~~  132 (263)
T d1xnya2          67 VGIV-ANQPMQFAGCLDITASEKAARFVRTCDAFN-VP-VLTFVDVPG-FLPGVD----------QEHDGIIRRGAKLIF  132 (263)
T ss_dssp             EEEE-EECTTTGGGCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEECC-BCCCHH----------HHHTTHHHHHHHHHH
T ss_pred             EEEE-ecccceecCCcchhhHHHHHHHHHHHHHhC-Cc-eEEeecccc-cccchh----------HHHHhHHHHHHHHHH
Confidence            4444 455543457899999999999888887643 45 455555543 666543          223345677889999


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHh----hccEEEEecCC
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVAL----ACHYRIAVKDK  189 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elal----acD~ria~~~a  189 (366)
                      .+.++..|.|..|-|.+.|||...+.    ..|+++|-+++
T Consensus       133 a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a  173 (263)
T d1xnya2         133 AYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTA  173 (263)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTC
T ss_pred             HHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchh
Confidence            99999999999999999998775533    24677666665

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.27  E-value=0.033  Score=49.47  Aligned_cols=153  Identities=16%  Similarity=0.239  Sum_probs=95.9

Q ss_pred             EEEEEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHH
Q psy9060          73 VLVVTLDSPGVKVNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILS  152 (366)
Q Consensus        73 Va~Itlnrp~~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      |++| -|+|.....+++.+-.+...+.++..... ++= +|.+...+ .|..|.+          .+.....+.+.+++.
T Consensus        69 vgvi-an~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iP-lv~l~D~p-Gf~~G~~----------~E~~g~i~~ga~~~~  134 (264)
T d1on3a2          69 VGIV-ANQPSVMSGCLDINASDKAAEFVNFCDSF-NIP-LVQLVDVP-GFLPGVQ----------QEYGGIIRHGAKMLY  134 (264)
T ss_dssp             EEEE-EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEEC-CBCCCHH----------HHHTTHHHHHHHHHH
T ss_pred             EEEE-eccchhcccccChHHHHHHHHHHHHHHhc-CCc-eEEEeccc-cccccHH----------HHHHHHHHHHHHHHH
Confidence            4444 45554346789999898888888888764 355 45555443 3666544          223345678889999


Q ss_pred             HHHcCCCCEEEEeccccchhHHHHHh----hccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCCh
Q psy9060         153 EIESSPKPIVAAISGSCLGGGLEVAL----ACHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGA  228 (366)
Q Consensus       153 ~i~~~~kP~Iaav~G~a~GgG~elal----acD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~  228 (366)
                      .+.++..|.|+.|-|.++|+|..-+.    ..|++++-++                               ..+|.+++-
T Consensus       135 a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~-------------------------------A~~~vMg~E  183 (264)
T d1on3a2         135 AYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPS-------------------------------AEIAVMGAE  183 (264)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTT-------------------------------CEEESSCHH
T ss_pred             HHHcCCCCEEEEEeccccCccccccccccCChhheeeHHh-------------------------------hHhhhccHH
Confidence            99999999999999999998765443    2455555554                               455665555


Q ss_pred             hHHhHHhhh-c---CHHHH--HHHHh--cCCCcCHHHHHHcCCcceecCC
Q psy9060         229 GGTQRLPKL-T---ALPNV--LDMTL--TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       229 gg~~~l~r~-~---G~~~a--~~l~l--tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      |+...+-+. +   .-..+  .+.+.  .-+.-++-.|.+.|+||+|++|
T Consensus       184 gaa~v~~~~el~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP  233 (264)
T d1on3a2         184 GAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDP  233 (264)
T ss_dssp             HHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCG
T ss_pred             HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeECH
Confidence            554443321 0   00000  01111  1122356788889999999987

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.83  E-value=0.56  Score=41.89  Aligned_cols=144  Identities=13%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy9060          85 VNSLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAA  164 (366)
Q Consensus        85 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaa  164 (366)
                      ..+++.+-.+...+.++.+.... +- +|.+... ..|-.|.+-          +.....+.+..++..+.++..|.|+.
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~~-iP-lv~l~D~-pGf~~g~~~----------E~~g~~r~ga~~~~a~~~~~VP~isv  162 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARDR-LP-IVWIQDT-TGIDVGNDA----------EKAELLGLGQSLIYSIQTSHIPQFEI  162 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHTT-CC-EEEEECC-CEECCSHHH----------HHTTHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHcC-Ce-EEEEEeC-CCcccchHH----------HhhhHHHHHHHHHHHHHhhcceeEEE
Confidence            35688888899999998887643 44 3444444 347776442          22335677889999999999999999


Q ss_pred             eccccchhHHHHHhh----ccEEEEecCCccCCCchhhhhhhhhhhhcccccccccccchhccCCCChhHHhHHhh-hcC
Q psy9060         165 ISGSCLGGGLEVALA----CHYRIAVKDKKTGLGLPEVALACHYRIVVKDKKTGLGLPEVMLGLLPGAGGTQRLPK-LTA  239 (366)
Q Consensus       165 v~G~a~GgG~elala----cD~ria~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~Gl~p~~gg~~~l~r-~~G  239 (366)
                      |-|.+.|||...+..    .|+++                             .+..|-.++|.+++-++...+-+ .+.
T Consensus       163 i~r~~~G~a~~am~g~~~~~~~~~-----------------------------~~awP~aeigvMg~E~aa~vl~~~el~  213 (299)
T d1pixa3         163 TLRKGTAAAHYVLGGPQGNDTNAF-----------------------------SIGTAATEIAVMNGETAATAMYSRRLA  213 (299)
T ss_dssp             ECSEEETTHHHHTTCTTCTTTEEE-----------------------------EEECTTCEEESSCHHHHHHHHHHHHHH
T ss_pred             EecccccccccccccCccCcccce-----------------------------ecCCCccccccccchhhheeehhhhhh
Confidence            999999988654332    22222                             22345556677766555544432 111


Q ss_pred             HH------------HHHHHHh-cCCCcCHHHHHHcCCcceecCC
Q psy9060         240 LP------------NVLDMTL-TGKTLKADKAKKMGIVDQLVEP  270 (366)
Q Consensus       240 ~~------------~a~~l~l-tG~~~~a~eA~~~GLVd~vv~~  270 (366)
                      ..            .-.+++- .-+..++-.|.+.|+||.|++|
T Consensus       214 ~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IIDP  257 (299)
T d1pixa3         214 KDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDM  257 (299)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCT
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeECH
Confidence            00            0011111 0122467788899999999987

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.089  Score=48.04  Aligned_cols=32  Identities=13%  Similarity=0.103  Sum_probs=30.2

Q ss_pred             CCCEEEEeccccchhHHHHHhhccEEEEecCC
Q psy9060         158 PKPIVAAISGSCLGGGLEVALACHYRIAVKDK  189 (366)
Q Consensus       158 ~kP~Iaav~G~a~GgG~elalacD~ria~~~a  189 (366)
                      ..|+|++|.|.|+|+|..++-.||++|+.+++
T Consensus       240 ~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s  271 (333)
T d1uyra1         240 DIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQ  271 (333)
T ss_dssp             HSCEEEEESSCEETHHHHHHHHTCCEEEETTC
T ss_pred             CCCEEEEEeCCccccceeecccccEEEEeCCc
Confidence            46999999999999999999999999999876

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.97  E-value=1.5  Score=40.46  Aligned_cols=77  Identities=16%  Similarity=0.258  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCccEEEEEeeCCCcEEcCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEe-
Q psy9060          87 SLNSEVMSEIQSILRRIQSDSSIRSAVIISGKPGCFIAGADISMLAACKTADQVKQISKSGQQILSEIESSPKPIVAAI-  165 (366)
Q Consensus        87 al~~~~~~eL~~al~~~~~d~~v~~vVl~~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav-  165 (366)
                      .+.++-.....+.+..+....++- +|++.. -..|+.|.+-          +.....+.+..++..+.++..|+|..| 
T Consensus       109 v~~p~sA~K~A~~i~d~cd~~~lP-Li~l~D-~pGF~~G~~~----------E~~gilr~GA~iv~A~~~~~vP~i~vI~  176 (404)
T d1uyra2         109 VWHPNSAFKTAQAINDFNNGEQLP-MMILAN-WRGFSGGQRD----------MFNEVLKYGSFIVDALVDYKQPIIIYIP  176 (404)
T ss_dssp             CBCHHHHHHHHHHHHHHHTTSCCC-EEECCC-CCCBCC----------------CTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred             ccCchHHHHHHHHHHHhhhccccc-eEEeec-CCcccCcHHH----------HHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            456666777777777665544555 444443 3468887652          223456788899999999999999999 


Q ss_pred             -ccccchhHHH
Q psy9060         166 -SGSCLGGGLE  175 (366)
Q Consensus       166 -~G~a~GgG~e  175 (366)
                       .|.+.||.+.
T Consensus       177 ~~g~~~GGa~v  187 (404)
T d1uyra2         177 PTGELRGGSWV  187 (404)
T ss_dssp             TTCEEEHHHHH
T ss_pred             CCcccchhhhh
Confidence             5666665443