Psyllid ID: psy9115

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MEMLWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFISGEPLDGR
Secondary Structure (PSIPRED)
cHHHHHccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccEcccccccc
Coil and Loop (DISEMBL)
memlwsrglecrrdkfqdqssfvVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVknkekseglsqddvrsvseqsafesyhgfisgepldgr
Flexible Loop (DISEMBL)
memlwsrglecrrdkfqdqssfvvtkehreslsknakalfvkckenirdiqnkytktvknkekseglsqddvrSVSEqsafesyhgfisgepldgr
Low Complexity Region (SEG)
MEMLWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFISGEPLDGR
Disordered region (IsUnstruct)
************************************KALFVKCKENIRDIQ*********************************************
Disordered Region (DISOPRED)
*********ECRRDKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDI**********************RSVSEQSAFESYHGFISGEPL***
Disordered Region (DISEMBL)
MEMLWSRGLECRRDKFQDQSSF***********KNAKALFVKCKENIRDIQNKYTKTV********************SAFESYHGFISGEPLDGR
Disordered Region (DISPRO)
******R*LECRRDKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFISGE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEMLWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFISGEPLDGR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
307167406	212	Ribosome-recycling factor, mitochondrial	0.479	0.216	0.673	9e-09
332375891	268	unknown [Dendroctonus ponderosae]	0.541	0.194	0.545	4e-08
357629685	185	mitochondrial ribosome recycling factor	0.541	0.281	0.545	1e-07
91077948	262	PREDICTED: similar to mitochondrial ribo	0.645	0.236	0.454	7e-07
241614866	263	ribosome recycling factor, putative [Ixo	0.625	0.228	0.531	7e-07
322796292	308	hypothetical protein SINV_09513 [Solenop	0.614	0.191	0.485	1e-06
157121137	258	mitochondrial ribosome recycling factor	0.458	0.170	0.595	2e-06
328718680	176	PREDICTED: ribosome-recycling factor, mi	0.760	0.414	0.409	2e-06
307191744	248	Ribosome-recycling factor, mitochondrial	0.479	0.185	0.571	3e-06
195129487	266	GI13908 [Drosophila mojavensis] gi|19392	0.541	0.195	0.527	5e-06

>gi|307167406|gb|EFN60991.1| Ribosome-recycling factor, mitochondrial [Camponotus floridanus]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 3/49 (6%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDV 72
           VTKEHRESLSKNAK+ + KC  NIRDI+NK  KTVKNK   EGL++D +
Sbjct: 133 VTKEHRESLSKNAKSFYTKCCSNIRDIRNKQIKTVKNK---EGLAKDII 178

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375891|gb|AEE63086.1| unknown [Dendroctonus ponderosae]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%), Gaps = 3/55 (5%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           VTKEHRE L+KNAK LFVKCK+++RD+Q K+ K +K +++   +S+D  RSV +Q
Sbjct: 190 VTKEHREQLAKNAKQLFVKCKDSVRDVQLKFIKQLKKQDR---ISEDLARSVEQQ 241

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357629685|gb|EHJ78304.1| mitochondrial ribosome recycling factor [Danaus plexippus]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 43/55 (78%), Gaps = 3/55 (5%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           VTKEHRE+L++NAK LF+KC+++I+DIQN+Y K  K   K   +S+D V SV++Q
Sbjct: 108 VTKEHREALARNAKILFIKCRDSIKDIQNEYIKKTK---KQTDVSEDLVFSVNKQ 159

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077948|ref|XP_966879.1| PREDICTED: similar to mitochondrial ribosome recycling factor [Tribolium castaneum] gi|270002287|gb|EEZ98734.1| hypothetical protein TcasGA2_TC001287 [Tribolium castaneum]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFES 83
           VT EHRE+L+K+AK +F+KC++ IRD+QNK  K++K K+K   +S+D  R+ SEQ     
Sbjct: 184 VTTEHRENLAKSAKTMFIKCRDGIRDVQNKQVKSLKKKDK---VSEDMARN-SEQQIVAI 239

Query: 84  YHGFIS 89
              +I+
Sbjct: 240 ADAYIA 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241614866|ref|XP_002406692.1| ribosome recycling factor, putative [Ixodes scapularis] gi|215500850|gb|EEC10344.1| ribosome recycling factor, putative [Ixodes scapularis]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 21  SFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTV-KNKEKSEGLSQDDVRSVSEQS 79
           +F VT+EHRE+LSKNAKALFVK KE++  I+ KY K + KNK    G+S+D V + S Q 
Sbjct: 181 TFRVTREHRETLSKNAKALFVKAKEDLVAIERKYLKEIQKNK---LGISEDVVYNASLQV 237

Query: 80  AFES 83
             E+
Sbjct: 238 KMEA 241

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796292|gb|EFZ18864.1| hypothetical protein SINV_09513 [Solenopsis invicta]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 9/68 (13%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFES 83
           VTKEHRE+LSKNAK+ +VKC +N+R I+NK  K +K KEK   L++D V  +      ES
Sbjct: 229 VTKEHRETLSKNAKSFYVKCCDNVRQIRNKQIKAIKQKEK---LAKDLVFRI------ES 279

Query: 84  YHGFISGE 91
           Y   +S +
Sbjct: 280 YIDILSHQ 287

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121137|ref|XP_001659843.1| mitochondrial ribosome recycling factor [Aedes aegypti] gi|108874707|gb|EAT38932.1| AAEL009225-PA [Aedes aegypti]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 3/47 (6%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQD 70
           VT+EHRE L+KNAK LFVKC++ I+DIQNK  K VK   K   +S+D
Sbjct: 180 VTREHREGLAKNAKTLFVKCRDAIKDIQNKTIKQVK---KQANISED 223

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718680|ref|XP_001942916.2| PREDICTED: ribosome-recycling factor, mitochondrial-like [Acyrthosiphon pisum]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 10/83 (12%)

Query: 1   MEMLWSRGLECRRDKFQDQSS-FV----VTKEHRESLSKNAKALFVKCKENIRDIQNKYT 55
           +E L + G+       QD++S F+    VTKEHRE+LSK AKALF+K K++I+++QNK  
Sbjct: 72  LESLKASGMNLNPQ--QDKTSIFIPIPKVTKEHRENLSKGAKALFIKTKDSIKELQNKNI 129

Query: 56  KTVKNKEKSEGLSQDDVRSVSEQ 78
           K +K+   ++ L+ D V ++ +Q
Sbjct: 130 KVLKD---NDALATDLVHTLQDQ 149

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191744|gb|EFN75186.1| Ribosome-recycling factor, mitochondrial [Harpegnathos saltator]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 3/49 (6%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDV 72
           VTKEHRE+LSKNAK  +VKC +N+RDI+NK  K++K   + E L++D V
Sbjct: 169 VTKEHRETLSKNAKGFYVKCCDNVRDIRNKQIKSLK---REESLAKDLV 214

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129487|ref|XP_002009187.1| GI13908 [Drosophila mojavensis] gi|193920796|gb|EDW19663.1| GI13908 [Drosophila mojavensis]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           VTKEHRE LSKNAKALF+K ++ IRDIQN   + +K   K   +++DDV +   Q
Sbjct: 188 VTKEHRELLSKNAKALFIKYRDAIRDIQNAQIRKLK---KQTDVAKDDVFAAQTQ 239

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
FB|FBgn0035980	254	CG4447 [Drosophila melanogaste	0.541	0.204	0.509	4.8e-08
MGI|MGI:1915121	262	Mrrf "mitochondrial ribosome r	0.541	0.198	0.428	0.00015
RGD|1305897	262	Mrrf "mitochondrial ribosome r	0.541	0.198	0.428	0.00015
UNIPROTKB|G3X7D8	84	MRRF "Ribosome-recycling facto	0.541	0.619	0.392	0.00021
TIGR_CMR|CJE_0285	185	CJE_0285 "ribosome recycling f	0.572	0.297	0.345	0.00031
UNIPROTKB|E1BQ58	259	MRRF "Uncharacterized protein"	0.552	0.204	0.436	0.00068
UNIPROTKB|Q0VCQ4	262	MRRF "Ribosome-recycling facto	0.541	0.198	0.392	0.0009
UNIPROTKB|F1SLQ7	262	LOC100515005 "Uncharacterized	0.541	0.198	0.410	0.0009

FB|FBgn0035980 CG4447 [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             VTKEHRE+LSKNAKALFVK ++ IR +QN++ + +K   K   L +DD  +   Q
Sbjct:   177 VTKEHRENLSKNAKALFVKYRDAIRGVQNEHIRKLK---KQPELGKDDAFAAQAQ 228

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1915121 Mrrf "mitochondrial ribosome recycling factor" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 0.00015, P = 0.00015
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             VT+EHRE L K AK    K KEN+R ++ N   K  K+K+K+   S+D +R + +Q
Sbjct:   185 VTREHREMLVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKT---SEDTIRLIEKQ 237

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0032790 "ribosome disassembly" evidence=ISO

RGD|1305897 Mrrf "mitochondrial ribosome recycling factor" [Rattus norvegicus (taxid:10116)]

 Score = 97 (39.2 bits), Expect = 0.00015, P = 0.00015
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             VT+EHRE L K AK    K KEN+R ++ N   K  K+K+K+   S+D +R + +Q
Sbjct:   185 VTREHREMLVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKT---SEDTIRLIEKQ 237

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0032790 "ribosome disassembly" evidence=ISO

UNIPROTKB|G3X7D8 MRRF "Ribosome-recycling factor, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             VT+EHRE L K AK    K K+++R ++ N   K  K+K+K+   S+D +R + +Q
Sbjct:     7 VTREHREMLVKLAKQNTNKAKDSLRKVRTNAINKVKKSKDKA---SEDTIRLIEKQ 59

GO:0006412 "translation" evidence=IEA

TIGR_CMR|CJE_0285 CJE_0285 "ribosome recycling factor" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 91 (37.1 bits), Expect = 0.00031, P = 0.00031
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             +T+E RE   K AKA+  K K +IR+I+      VK  EK + +S+D+ +   ++
Sbjct:   105 MTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDE 159

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|E1BQ58 MRRF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 91 (37.1 bits), Expect = 0.00068, P = 0.00068
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             VT+EHRESL+K AK    K KE +R +++K    VK K KS+ +S+D +  + +Q
Sbjct:   182 VTREHRESLAKLAKQSTNKSKEALRKVRSKSVNQVK-KFKSK-VSEDTIWLLEKQ 234

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q0VCQ4 MRRF "Ribosome-recycling factor, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 90 (36.7 bits), Expect = 0.00090, P = 0.00090
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             VT+EHRE L K AK    K K+++R ++ N   K  K+K+K+   S+D +R + +Q
Sbjct:   185 VTREHREMLVKLAKQNTNKAKDSLRKVRTNAINKVKKSKDKA---SEDTIRLIEKQ 237

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1SLQ7 LOC100515005 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 90 (36.7 bits), Expect = 0.00090, P = 0.00090
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query:    24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             VT+EHRE L K AK    K KE++R ++ N   K  K+K+K+   S+D +R + +Q
Sbjct:   185 VTREHREMLVKLAKQNTNKAKESLRKVRTNAMNKLKKSKDKA---SEDTLRLIEKQ 237


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 23  0.41    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:09
  No. of threads or processors used:  24
  Search cpu time:  13.94u 0.07s 14.01t   Elapsed:  00:00:30
  Total cpu time:  13.94u 0.07s 14.01t   Elapsed:  00:00:39
  Start:  Thu Aug 15 14:09:38 2013   End:  Thu Aug 15 14:10:17 2013

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	96
cd00520	179	cd00520, RRF, Ribosome recycling factor (RRF)	8e-07
pfam01765	165	pfam01765, RRF, Ribosome recycling factor	2e-06
COG0233	187	COG0233, Frr, Ribosome recycling factor [Translati	0.002

>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF)

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           +T+E R+ L K+AK +  + K  IR+I+      +K  EK + +S+D+V+   E 
Sbjct: 101 LTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEED 155

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179

>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           +T+E R+ L K AK L  + K  IR+I+      +K  EK + +S+D+V+   ++
Sbjct: 87  LTEERRKELVKQAKKLAEEAKVAIRNIRRDANDKLKKLEKDKEISEDEVKRAEKE 141

The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165

>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 25  TKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           T+E R+ L K AK    + K  +R+I+      +K  EK + +S+D+V+   E+
Sbjct: 108 TEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEE 161

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
COG0233	187	Frr Ribosome recycling factor [Translation, riboso	99.95
PRK00083	185	frr ribosome recycling factor; Reviewed	99.93
TIGR00496	176	frr ribosome recycling factor. This model finds on	99.92
cd00520	179	RRF Ribosome recycling factor (RRF). Ribosome recy	99.91
PF01765	165	RRF: Ribosome recycling factor; InterPro: IPR02358	99.86
KOG4759|consensus	263		99.6

>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=7.1e-28  Score=182.07  Aligned_cols=74  Identities=24%  Similarity=0.314  Sum_probs=71.7

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|||++|||.||+++|+|||+|||||||+|++|||++|++.||||+.++++++||++| |.||+
T Consensus        98 ~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQKlT-d~yi~  171 (187)
T COG0233          98 NVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLT-DEYIK  171 (187)
T ss_pred             CeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH-HHHHH
Confidence            358999999999999999999999999999999999999999999999999999999999999999999 99986

>PRK00083 frr ribosome recycling factor; Reviewed

Probab=99.93  E-value=7.9e-26  Score=168.66  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=71.5

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|+|++|||.|++++|+||++||||||+++++||+++|++++|||+.++++++||++| |+||+
T Consensus        96 ~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQklt-d~~i~  169 (185)
T PRK00083         96 TVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLT-DKYIK  169 (185)
T ss_pred             CEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH-HHHHH
Confidence            467999999999999999999999999999999999999999999999889999999999999999999 99986

>TIGR00496 frr ribosome recycling factor

Probab=99.92  E-value=9.3e-26  Score=167.21  Aligned_cols=74  Identities=24%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++||||+||+|+|++|||.|++++|+||++||||||+++++||+++|++.+|||+.+.++++||++| |+||+
T Consensus        87 ~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQklt-d~~i~  160 (176)
T TIGR00496        87 SVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLT-DEYIK  160 (176)
T ss_pred             CEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            467999999999999999999999999999999999999999999999888999999999999999999 99986

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.

>cd00520 RRF Ribosome recycling factor (RRF)

Probab=99.91  E-value=6.7e-25  Score=162.23  Aligned_cols=73  Identities=26%  Similarity=0.348  Sum_probs=71.0

Q ss_pred             cCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          16 FQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        16 ~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      .++|+||+||+|+|++|||.||+++|+||++||||||++++.||++++++.+|||+.++++++||++| |+|++
T Consensus        93 ~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqklt-d~~i~  165 (179)
T cd00520          93 VIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLT-DEYIK  165 (179)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH-HHHHH
Confidence            67999999999999999999999999999999999999999999999888899999999999999999 99986

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.

>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []

Probab=99.86  E-value=4.5e-22  Score=144.38  Aligned_cols=74  Identities=26%  Similarity=0.325  Sum_probs=68.4

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ....|+||+||+|+|++|+|.||+++|+||++|||||+++++.+|+..+++.+|+|+.++++++||++| |+|++
T Consensus        78 ~~i~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~-~~~~~  151 (165)
T PF01765_consen   78 NTIRVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLT-DKYIK  151 (165)
T ss_dssp             TEEEEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH-HHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHH-HHHHH
Confidence            567899999999999999999999999999999999999999999999888899999999999999999 99986

Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....

>KOG4759|consensus

Probab=99.60  E-value=1.5e-15  Score=120.04  Aligned_cols=71  Identities=31%  Similarity=0.361  Sum_probs=66.9

Q ss_pred             cCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          16 FQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        16 ~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ...++||++|.|||++|+|.+++.+|++|++||+||++++++++|.++  .+++|+++.+|.++|+++ |.|++
T Consensus       177 ~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~--~~~~D~vkkae~~l~~l~-k~~v~  247 (263)
T KOG4759|consen  177 VLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK--SLSEDEVKKAEAELQKLA-KDAVN  247 (263)
T ss_pred             EEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHH-HHHHH
Confidence            467999999999999999999999999999999999999999999853  399999999999999999 99986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	99.95
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	99.95
1wqg_A	185	Ribosome recycling factor; translation factor, tri	99.95
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	99.95
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	99.95
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	99.94
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	99.94
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	99.94
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	99.93
1wih_A	84	Mitochondrial ribosome recycling factor; structura	94.92
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	86.92
1l6x_B	34	Minimized B-domain of protein A Z34C; IGG1 FC, FC	86.32
1zda_A	38	Mini protein A domain, Z38; IGG binding domain, pr	80.18

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8

Probab=99.95  E-value=1.5e-28  Score=174.84  Aligned_cols=71  Identities=10%  Similarity=0.005  Sum_probs=69.0

Q ss_pred             cCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          16 FQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        16 ~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      -++|+||  |+|||++|||+|++++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |.||+
T Consensus        37 ~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLT-DkyIk  107 (123)
T 3lhp_S           37 AVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLT-DAAIK  107 (123)
T ss_dssp             HHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHH-HHHHH
T ss_pred             eEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH-HHHHH
Confidence            3789999  99999999999999999999999999999999999999999999999999999999999 99986

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C

Probab=99.95  E-value=3.7e-28  Score=181.10  Aligned_cols=74  Identities=24%  Similarity=0.287  Sum_probs=72.0

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus        96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~  169 (185)
T 1dd5_A           96 NVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLT-DEFIE  169 (185)
T ss_dssp             SCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            568999999999999999999999999999999999999999999999999999999999999999999 99986

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A

Probab=99.95  E-value=4.4e-28  Score=180.55  Aligned_cols=74  Identities=20%  Similarity=0.261  Sum_probs=72.0

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus        96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~  169 (185)
T 1wqg_A           96 ALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTT-HQYVT  169 (185)
T ss_dssp             SCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            568999999999999999999999999999999999999999999999999999999999999999999 99986

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y

Probab=99.95  E-value=4.1e-28  Score=180.72  Aligned_cols=74  Identities=18%  Similarity=0.162  Sum_probs=71.9

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus        96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~  169 (185)
T 1is1_A           96 TIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLT-DVAVK  169 (185)
T ss_dssp             TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999999 99986

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8

Probab=99.95  E-value=4.2e-28  Score=180.85  Aligned_cols=74  Identities=19%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus        96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~  169 (185)
T 1ise_A           96 SDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLT-DAAIK  169 (185)
T ss_dssp             SEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999999 99986

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}

Probab=99.94  E-value=7.4e-28  Score=182.85  Aligned_cols=75  Identities=23%  Similarity=0.314  Sum_probs=72.5

Q ss_pred             cccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          14 DKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        14 ~~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ...++||||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus       119 G~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklT-d~~i~  193 (209)
T 4gfq_A          119 GTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKET-DKYIA  193 (209)
T ss_dssp             SSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH-HHHHH
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999 99986

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G

Probab=99.94  E-value=4.3e-28  Score=180.77  Aligned_cols=74  Identities=19%  Similarity=0.218  Sum_probs=71.8

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus        97 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~  170 (185)
T 1eh1_A           97 DALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKIT-DEFIA  170 (185)
T ss_dssp             TEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999999 99986

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}

Probab=99.94  E-value=6e-27  Score=166.32  Aligned_cols=68  Identities=13%  Similarity=0.033  Sum_probs=66.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          21 SFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        21 iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      =.|||+|||++|||+|++++|+|||||||||||||+.||+++|++.||||+.++++++||++| |.||+
T Consensus        30 ~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLT-DkyIk   97 (121)
T 3lf9_A           30 GGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLT-DVAVK   97 (121)
T ss_dssp             SSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHH-HHHHH
Confidence            368999999999999999999999999999999999999999999999999999999999999 99986

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1

Probab=99.93  E-value=1.4e-26  Score=172.43  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=68.2

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++  + ||||+.++++++||++| |+||+
T Consensus        98 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~--k-iseD~~k~~e~~iQklt-d~~i~  168 (184)
T 1ge9_A           98 NVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE--G-ISEDEKKRALERLQKLT-DKYID  168 (184)
T ss_dssp             TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--T-CCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHH-HHHHH
Confidence            468999999999999999999999999999999999999999999986  4 99999999999999999 99986

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1

Probab=94.92  E-value=0.0009  Score=44.28  Aligned_cols=16  Identities=13%  Similarity=-0.089  Sum_probs=14.4

Q ss_pred             ccCccCCCCCCHHHHH
Q psy9115          15 KFQDQSSFVVTKEHRE   30 (96)
Q Consensus        15 ~~~~i~iP~LTeErRk   30 (96)
                      ..++|+||+||+|||+
T Consensus        68 ~~Iri~iP~lTeErR~   83 (84)
T 1wih_A           68 TLIRVPIPKVTSGPSS   83 (84)
T ss_dssp             TEEEEECCCSSCSSCC
T ss_pred             CEEEEeCCCCChhccC
Confidence            4689999999999996

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=86.92  E-value=3.8  Score=26.61  Aligned_cols=56  Identities=7%  Similarity=0.062  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHH------hhHHHHHHHhhhhcCCCChhhhhh-hHHHHHHHh
Q psy9115          21 SFVVTKEHRESLSKNAKALFVKCKEN-------IRDI------QNKYTKTVKNKEKSEGLSQDDVRS-VSEQSAFES   83 (96)
Q Consensus        21 iP~LTeErRkeLVK~aKk~~EeaKva-------IRNI------RRda~~~iKK~eK~~~iSEDd~k~-~e~~IQklT   83 (96)
                      +|.++.|.|+.+++.+....++|..-       +||+      |..++.+|+...       -++.. ++.++++++
T Consensus        24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk-------~dl~~~lk~~lk~l~   93 (97)
T 3onj_A           24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK-------KTIQSDIKRPLQSLV   93 (97)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHHHHHTHHHHHHHH
T ss_pred             HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence            57899999999999998888888754       4555      777777777763       24555 788888888

>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A

Probab=86.32  E-value=0.47  Score=26.86  Aligned_cols=22  Identities=14%  Similarity=0.167  Sum_probs=18.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHH
Q psy9115          17 QDQSSFVVTKEHRESLSKNAKA   38 (96)
Q Consensus        17 ~~i~iP~LTeErRkeLVK~aKk   38 (96)
                      .-+.+|-||||.|...++.+|.
T Consensus        11 evLh~~nLtEeQrn~yI~slkd   32 (34)
T 1l6x_B           11 EALHDPNLNEEQRNAKIKSIRD   32 (34)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCHHHHHhHHHHHhc
Confidence            3467899999999999998874

>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A

Probab=80.18  E-value=0.56  Score=27.13  Aligned_cols=20  Identities=15%  Similarity=0.160  Sum_probs=17.7

Q ss_pred             ccCCCCCCHHHHHHHHHHHH
Q psy9115          18 DQSSFVVTKEHRESLSKNAK   37 (96)
Q Consensus        18 ~i~iP~LTeErRkeLVK~aK   37 (96)
                      -+.+|-||||.|...++.+|
T Consensus        17 vLh~~nLtEeQrn~yI~slk   36 (38)
T 1zda_A           17 ALHDPNLNEEQRNAKIKSIR   36 (38)
T ss_dssp             HHSCSSSCTTHHHHHHHHHS
T ss_pred             HHcCCCCCHHHHHhHHHHhh
Confidence            46899999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1is1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibr	1e-05
d1wqga1	183	d.67.3.1 (A:2-184) Ribosome recycling factor, RRF	2e-05
d1eh1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	2e-05
d1dd5a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	6e-05

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           +T+E R+ L K  +      +  +R+I+      +K   K + +S+D+ R   E+
Sbjct: 105 LTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEE 159

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 22  FVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             +T+E R  L K AK    + K ++R+I+ K  + +    K     +D+V    + 
Sbjct: 102 PQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKD 158

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           +T+E R+ L +  +    + +  IR+I+ +    +K   K   LS+D+ +    +
Sbjct: 106 LTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE 160

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (86), Expect = 6e-05
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
            T E RE   K AK +  + K  IR+I+ +  K +K  +K   + +DD + +  +
Sbjct: 104 PTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENE 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1wqga1	183	Ribosome recycling factor, RRF {Mycobacterium tube	99.92
d1is1a_	185	Ribosome recycling factor, RRF {Vibrio parahaemoly	99.92
d1dd5a_	184	Ribosome recycling factor, RRF {Thermotoga maritim	99.92
d1ek8a_	185	Ribosome recycling factor, RRF {Escherichia coli [	99.91
d1eh1a_	185	Ribosome recycling factor, RRF {Thermus thermophil	99.9
d1ge9a_	184	Ribosome recycling factor, RRF {Aquifex aeolicus [	99.9

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=1.1e-25  Score=164.35  Aligned_cols=75  Identities=20%  Similarity=0.258  Sum_probs=72.1

Q ss_pred             cccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          14 DKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        14 ~~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ...++||||+||+|||++|||.||+++|+||++||||||++++.||++++++.+|||+.++++++||++| |+|++
T Consensus        94 g~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~iq~lt-d~~~~  168 (183)
T d1wqga1          94 GALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTT-HQYVT  168 (183)
T ss_dssp             SSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999 99985

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.92  E-value=9.8e-26  Score=164.77  Aligned_cols=75  Identities=17%  Similarity=0.161  Sum_probs=72.1

Q ss_pred             cccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          14 DKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        14 ~~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ...++|+||+||+|+|++|||.||+++|+||++||||||++++.||+++|++++|||+.++++++||++| |+|++
T Consensus        95 g~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq~lt-d~~~~  169 (185)
T d1is1a_          95 GTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLT-DVAVK  169 (185)
T ss_dssp             TTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CceeeecCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHhHHHHHHHHHHHHH-HHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999 99985

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.1e-25  Score=164.38  Aligned_cols=75  Identities=24%  Similarity=0.283  Sum_probs=72.2

Q ss_pred             cccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          14 DKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        14 ~~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ...++||||+||+|+|++|||.||+++|+||++||||||+++++||+++|+++||||+.++++++||++| |+|++
T Consensus        94 g~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~iq~lt-d~~~~  168 (184)
T d1dd5a_          94 GNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLT-DEFIE  168 (184)
T ss_dssp             SSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             cccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999 99985

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.8e-25  Score=163.39  Aligned_cols=75  Identities=19%  Similarity=0.192  Sum_probs=72.2

Q ss_pred             cccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          14 DKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        14 ~~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ...++|+||+||+|+|++|||.||+++|+||++||||||++++.||+++|++++|||+.++++++||++| |+|++
T Consensus        95 g~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~~~iseD~~k~~~~~iq~lt-d~~~~  169 (185)
T d1ek8a_          95 GSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLT-DAAIK  169 (185)
T ss_dssp             TTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             ccceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH-HHHHH
Confidence            4567999999999999999999999999999999999999999999999999999999999999999999 99986

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=3.5e-25  Score=161.80  Aligned_cols=75  Identities=19%  Similarity=0.215  Sum_probs=72.0

Q ss_pred             cccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          14 DKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        14 ~~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ...++|+||+||+|+|++|||.||+++|+||++|||||+++++.||+++|++++|||+.++++++||++| |+|++
T Consensus        96 g~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~eiq~lt-d~~~~  170 (185)
T d1eh1a_          96 GDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKIT-DEFIA  170 (185)
T ss_dssp             TTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             ccceeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHH-HHHHH
Confidence            3578999999999999999999999999999999999999999999999988999999999999999999 99985

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.90  E-value=1.6e-24  Score=158.16  Aligned_cols=71  Identities=15%  Similarity=0.270  Sum_probs=67.5

Q ss_pred             ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115          15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS   89 (96)
Q Consensus        15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~   89 (96)
                      ..++||||+||+|||++|||.||+++|+||++|||||+++++.||++   +++|||+.++++++||++| |+|++
T Consensus        98 ~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~---k~iseD~~k~~~~~iqklt-d~~~~  168 (184)
T d1ge9a_          98 NVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEEL---EGISEDEKKRALERLQKLT-DKYID  168 (184)
T ss_dssp             TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred             cceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHH-HHHHH
Confidence            46899999999999999999999999999999999999999999987   3599999999999999999 99985