Psyllid ID: psy9119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MSVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHccccccccEEEEEEEEccccccHHHHHHHHHHccccccccEccEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHccccccccccccccccHHHHHHcccccHHHHHHHccHHHHEHcccccccccccccccHcccccccHcccEEEccccccHHHccccccHHHHHHHHHHHHccEEEEccHHHHHHHHHHHccccccHHHHHHEHEEHcccccccc
Coil and Loop (DISEMBL)
msvisehrgictvysgdhtevtqvdfdpsvisYKEILRIFWkhhdptvqmkTQYRSMIlhvnpedkEVAEKSLAEEktkhrkpittlvvpfkrfydaeewprrVSLRRrrnignpsphlsyrshdsmTRKTLRASAQVELQERRLlqnlppsgtperlcrglnnrLLFSLHSYHQKYRlrqhselqpklnfksedcyktSHLAARLNGYVVGFGGIKQFEEEAdqlglsedVKNYVRKYVKRyegsgmmc
Flexible Loop (DISEMBL)
MSVISEHRGICTvysgdhtevtqvdFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLaeektkhrkpittlvvpfkrfydaeewprrvslrrrrnignpsphlsyrshdsmtRKTLRASAQVELQErrllqnlppsgtperLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEadqlglsedvknyVRKYVKryegsgmmc
Low Complexity Region (SEG)
MSVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC
Disordered region (IsUnstruct)
******HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHV**********************ITTLVVPFKRFYDAEEWPRR******************************************************LCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKR********
Disordered Region (DISOPRED)
MSVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAE********KHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLR***************************GLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC
Disordered Region (DISEMBL)
********GICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC
Disordered Region (DISPRO)
MSVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEG****C
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q04PP8	176	Peptide methionine sulfox	yes	N/A	0.376	0.534	0.435	3e-15
A8G8X6	213	Peptide methionine sulfox	yes	N/A	0.368	0.431	0.432	4e-15
P08761	246	Peptide methionine sulfox	yes	N/A	0.412	0.418	0.414	7e-15
Q4J9L3	176	Peptide methionine sulfox	yes	N/A	0.36	0.511	0.432	8e-15
Q97Y45	177	Peptide methionine sulfox	yes	N/A	0.372	0.525	0.42	1e-14
Q055M2	176	Peptide methionine sulfox	yes	N/A	0.376	0.534	0.415	1e-13
Q747V4	162	Peptide methionine sulfox	yes	N/A	0.356	0.549	0.387	2e-13
Q8TQV6	188	Peptide methionine sulfox	yes	N/A	0.36	0.478	0.414	2e-13
A7MM56	212	Peptide methionine sulfox	yes	N/A	0.368	0.433	0.394	4e-13
Q6LYY1	157	Peptide methionine sulfox	yes	N/A	0.416	0.662	0.360	4e-13

>sp|Q04PP8|MSRA_LEPBJ Peptide methionine sulfoxide reductase MsrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=msrA PE=3 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 7/101 (6%)

Query: 6   EHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMIL 59
           ++R +C+  +G H E  Q+ FD  VISY EIL IFW  HDPT        + TQYRS+IL
Sbjct: 40  DYRSVCSGTTG-HAETVQITFDSKVISYFEILEIFWISHDPTTLNRQGNDVGTQYRSIIL 98

Query: 60  HVNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           + +PE K+ AE+S+ +       PI T V   K FY AE++
Sbjct: 99  YHSPEQKKQAEQSIQKAGEHFSDPIVTQVEILKEFYPAEDY 139

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 1

>sp|A8G8X6|MSRA_SERP5 Peptide methionine sulfoxide reductase MsrA OS=Serratia proteamaculans (strain 568) GN=msrA PE=3 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 12/104 (11%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
           +R +C+  +G HTEV +V FDP +ISYK++L++FW++HDP   M+      TQYRS I  
Sbjct: 84  YREVCSGQTG-HTEVVRVVFDPKIISYKQLLQVFWENHDPAQGMRQGGDVGTQYRSAIYT 142

Query: 61  VNPEDKEVAEKSL-----AEEKTKHRKPITTLVVPFKRFYDAEE 99
           + PE +  AE SL     A E+   ++ ITT V P   FY AE+
Sbjct: 143 LTPEQQTEAESSLQRFQQAMEQAGDKRAITTEVAPALPFYYAED 186

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Serratia proteamaculans (strain 568) (taxid: 399741)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|P08761|MSRA_DROME Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 71/111 (63%), Gaps = 8/111 (7%)

Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHD--PTVQMKTQYRSMILHVNPEDKEVAEKSL 73
           GDHTEV ++D+DP+VIS+KE+L +FW +H+   T  +K QY S+IL+ + E K+VA  S 
Sbjct: 83  GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTTPIKRQYASLILYHDEEQKQVAHASK 142

Query: 74  AEEKTKHRKP--ITTLVVPFKRFYDAEEWPRRVSLRRRRNIG---NPSPHL 119
            EE+ + R P  ITT +   + FY AE + ++  L+  +++    N SP L
Sbjct: 143 LEEQER-RAPEIITTEIASKENFYPAEAYHQKYRLQGHKDLASSLNLSPKL 192

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q4J9L3|MSRA_SULAC Peptide methionine sulfoxide reductase MsrA OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=msrA PE=3 SV=2

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 7/97 (7%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMILHVNP 63
           +CT  +G H EV Q+ FDPSVI+Y+E+L IF++ HDPT        + +QYRS+IL+ + 
Sbjct: 44  VCTDETG-HAEVVQITFDPSVITYRELLEIFFEIHDPTTPNRQGNDVGSQYRSIILYHSE 102

Query: 64  EDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           E K++AE+ +   + K  K + T +VPF+ FY+AE++
Sbjct: 103 EQKKIAEEMIKLYERKLGKKVVTELVPFEAFYEAEDY 139

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q97Y45|MSRA_SULSO Peptide methionine sulfoxide reductase MsrA OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=msrA PE=3 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 7/100 (7%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMILH 60
           +  +CT  +G H EV Q+ FD S+ISY+EIL IF++ HDPT        + TQYRS+IL+
Sbjct: 41  YEDVCTDTTG-HAEVVQITFDSSIISYREILEIFFEIHDPTTLNRQGNDVGTQYRSIILY 99

Query: 61  VNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
            N E +++AE+ + E + +  K + T + PF+ FY+AE++
Sbjct: 100 HNEEQRKIAEEMIREVEKRIGKKVVTELKPFEVFYEAEDY 139

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q055M2|MSRA_LEPBL Peptide methionine sulfoxide reductase MsrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=msrA PE=3 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 6   EHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMIL 59
           ++R +C+  +G H E  Q+ FD  VISY EIL IFW  HDPT        +  QYRS+I 
Sbjct: 40  DYRSVCSGTTG-HAETVQITFDSKVISYFEILEIFWISHDPTTLNRQGNDVGIQYRSIIP 98

Query: 60  HVNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           + +PE K+ AE+S+ +       PI T V   K FY AE++
Sbjct: 99  YHSPEQKKQAEQSIQKAGEHFSDPIVTQVEILKEFYPAEDY 139

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q747V4|MSRA_GEOSL Peptide methionine sulfoxide reductase MsrA OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=msrA PE=3 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 9/98 (9%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPT------VQMKTQYRSMILHVNP 63
           +C+  +G H EV +V FDP+ ++Y  +LR+FW  HDPT        + T YRS+I + +P
Sbjct: 50  VCSKTTG-HAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSP 108

Query: 64  EDKEVAEKSLAEEK--TKHRKPITTLVVPFKRFYDAEE 99
           + +  A  SL  E+   +H +PI T +VP   F+ AEE
Sbjct: 109 DQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEE 146

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q8TQV6|MSRA_METAC Peptide methionine sulfoxide reductase MsrA OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=msrA PE=3 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 9/99 (9%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNP 63
           +CT+ +G H E  +V FDP V+SYK +L +FWK HDPT +      +  QYRS+I + N 
Sbjct: 71  VCTLDTG-HAEAVRVIFDPKVVSYKNLLDVFWKIHDPTTKNRQGPDVGKQYRSVIFYHNE 129

Query: 64  EDK--EVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           E K   +A K   E+    + PI T +VP   FY AE++
Sbjct: 130 EQKAAALASKEELEKAGVFKNPIVTEIVPVSEFYMAEDY 168

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|A7MM56|MSRA_CROS8 Peptide methionine sulfoxide reductase MsrA OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 12/104 (11%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
           +R +C+  +G H E  +V +DP+VISY+++L++FW++HDP   M+      TQYRS I  
Sbjct: 83  YREVCSGQTG-HAEAVRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYP 141

Query: 61  VNPEDKEVAEKSL-----AEEKTKHRKPITTLVVPFKRFYDAEE 99
           + PE +  A+ SL     A E     + ITT + P K FY AE+
Sbjct: 142 LTPEQEAAAQASLERFRAAMEAAGDYRHITTEIAPAKPFYYAED 185

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

>sp|Q6LYY1|MSRA_METMP Peptide methionine sulfoxide reductase MsrA OS=Methanococcus maripaludis (strain S2 / LL) GN=msrA PE=3 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 7/111 (6%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKT------QYRSMILHVNP 63
           +C   SG H EV ++D+DP +ISY E+L +FW +H+PT   K       QY S I + + 
Sbjct: 47  VCRGKSG-HIEVVKIDYDPEIISYDELLDLFWNNHNPTTPNKQGWDVGEQYSSYIFYFDD 105

Query: 64  EDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGN 114
           E K +AEKSL + +      I T++     FY AEE+ ++  +++  +I N
Sbjct: 106 EQKLIAEKSLEKMQENTDLKIVTIIEKAGSFYPAEEYHQKYFMKKNNSILN 156

Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.

Methanococcus maripaludis (strain S2 / LL) (taxid: 267377)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
242012243	217	EIP28, putative [Pediculus humanus corpo	0.384	0.442	0.424	4e-19
307095122	241	peptide methionine sulfoxide reductase M	0.368	0.381	0.430	1e-17
118792114	236	AGAP012395-PA [Anopheles gambiae str. PE	0.42	0.444	0.415	2e-17
118792116	236	AGAP012394-PA [Anopheles gambiae str. PE	0.42	0.444	0.415	2e-17
195454829	248	GK10595 [Drosophila willistoni] gi|19417	0.652	0.657	0.288	2e-17
308503456	207	hypothetical protein CRE_26134 [Caenorha	0.38	0.458	0.458	3e-17
94468480	235	peptide methionine sulfoxide reductase [	0.42	0.446	0.381	1e-16
157107476	235	methionine sulfoxide reductase [Aedes ae	0.42	0.446	0.381	1e-16
260798210	193	hypothetical protein BRAFLDRAFT_68465 [B	0.392	0.507	0.383	2e-16
312069578	210	peptide methionine sulfoxide reductase [	0.568	0.676	0.343	2e-16

>gi|242012243|ref|XP_002426843.1| EIP28, putative [Pediculus humanus corporis] gi|212511056|gb|EEB14105.1| EIP28, putative [Pediculus humanus corporis]

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 70/99 (70%)

Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAE 75
           GDHTE  ++D+DP+V+SY+++L IFW +HDP+ +M  QY S I + + + K +AEK+L E
Sbjct: 55  GDHTEAVELDYDPNVVSYEDLLNIFWSNHDPSARMSRQYASAIFYHDGDQKTLAEKTLKE 114

Query: 76  EKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGN 114
           ++ K R PI T++ P K FY+AE++ ++  L++   + N
Sbjct: 115 QEGKVRSPIVTMLAPAKEFYNAEDYHQKYRLQQHTFLMN 153

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307095122|gb|ADN29867.1| peptide methionine sulfoxide reductase MsrA [Triatoma matogrossensis]

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 66/93 (70%)

Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAE 75
           GDHTE  ++D+DP V+ Y+ +L +FW +HDPT ++K QY S I + + E KE+AE++L E
Sbjct: 81  GDHTEAIEIDYDPKVVDYQTLLDLFWANHDPTAKVKLQYTSFIFYHDEEQKEIAERTLKE 140

Query: 76  EKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRR 108
           ++  + KP+ T V P  +FYDAE++ ++  L++
Sbjct: 141 QQKLYDKPLVTEVRPSVKFYDAEDYHQKYRLQQ 173

Source: Triatoma matogrossensis

Species: Triatoma matogrossensis

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792114|ref|XP_320163.3| AGAP012395-PA [Anopheles gambiae str. PEST] gi|116116745|gb|EAA00212.3| AGAP012395-PA [Anopheles gambiae str. PEST]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 13/118 (11%)

Query: 133 RASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFK 192
           RA  QV+    +++  + P+G              +   +YHQKYRL+ H++L   +   
Sbjct: 132 RAEEQVKRAPEQIITEIAPAGP------------FYPAENYHQKYRLQGHTDLAKGIGL- 178

Query: 193 SEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC 250
           + D   TSH+AARLNGY++G  G+KQFE+EAD LGLS+D   YVR+YV + EG G+ C
Sbjct: 179 TPDLLHTSHVAARLNGYLIGVSGLKQFEDEADLLGLSKDQVQYVREYVIQNEGGGIFC 236

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792116|ref|XP_320164.3| AGAP012394-PA [Anopheles gambiae str. PEST] gi|116116746|gb|EAA00184.4| AGAP012394-PA [Anopheles gambiae str. PEST]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 13/118 (11%)

Query: 133 RASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFK 192
           RA  QV+    +++  + P+G              +   +YHQKYRL+ H++L   +   
Sbjct: 132 RAEEQVKRAPEQIITEIAPAGP------------FYPAENYHQKYRLQGHTDLAKGIGL- 178

Query: 193 SEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC 250
           + D   TSH+AARLNGY++G  G+KQFE+EAD LGLS+D   YVR+YV + EG G+ C
Sbjct: 179 TPDLLHTSHVAARLNGYLIGVSGLKQFEDEADLLGLSKDQVQYVREYVIQNEGGGIFC 236

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454829|ref|XP_002074425.1| GK10595 [Drosophila willistoni] gi|194170510|gb|EDW85411.1| GK10595 [Drosophila willistoni]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 73/236 (30%)

Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAE 75
           GDHTEV ++D+DP+VIS+KE+L +FW +                                
Sbjct: 85  GDHTEVLEIDYDPTVISFKELLDLFWNN-------------------------------- 112

Query: 76  EKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRAS 135
               H   +TT   P KR Y                    +  + Y  HD   ++   AS
Sbjct: 113 ----HEYGLTT---PIKRQY--------------------ASLILY--HDDEQKQIAEAS 143

Query: 136 AQVELQERRLLQNLPPSGTPERLCRGLN-NRLLFSLHSYHQKYRLRQHSELQPKLNFKSE 194
            + E QERR         +PE +   ++  +  ++   YHQKYRL+ H +L   LN  ++
Sbjct: 144 IKEE-QERR---------SPEIITTEISPKKNFYAAEDYHQKYRLQGHKDLVSSLNL-NQ 192

Query: 195 DCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC 250
              +TS +A +LNGY+ G GG++QF+ E +  GL+   + Y   +V++ EG G+ C
Sbjct: 193 KLLQTSFVATKLNGYLAGVGGVEQFKSEVESFGLTPTQRQYCNHHVEQNEGQGLYC 248

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308503456|ref|XP_003113912.1| hypothetical protein CRE_26134 [Caenorhabditis remanei] gi|308263871|gb|EFP07824.1| hypothetical protein CRE_26134 [Caenorhabditis remanei]

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 63/96 (65%), Gaps = 1/96 (1%)

Query: 17  DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAEE 76
           DHTE+T++ FDP VI Y ++   FWKHH+P  + K QY+S IL+VN   K+VAE SL   
Sbjct: 48  DHTEITEITFDPKVIEYSKLTNFFWKHHNPAERRKKQYQSAILYVNDSQKKVAEDSLKAA 107

Query: 77  KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNI 112
           K KH   I T V P  +FY AE++ ++   R+++N+
Sbjct: 108 KEKH-GDIETYVEPLDKFYQAEDYHQKYWFRQKKNL 142

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|94468480|gb|ABF18089.1| peptide methionine sulfoxide reductase [Aedes aegypti]

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 13/118 (11%)

Query: 133 RASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFK 192
           RA  Q++    +++  + P+G            + +    YHQKYRL+ H +L   +   
Sbjct: 131 RAEEQIKRAPEKIITEIAPAG------------IFYPAEDYHQKYRLQGHRDLAKSIGLT 178

Query: 193 SEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC 250
            E  +K SH+AARLNGY++G GG++QFE++ D+LGL+ D   YVR YV+  EG G+ C
Sbjct: 179 PELLHK-SHVAARLNGYLIGVGGLEQFEKDTDRLGLNTDQAQYVRDYVRENEGGGIFC 235

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107476|ref|XP_001649797.1| methionine sulfoxide reductase [Aedes aegypti] gi|108884083|gb|EAT48308.1| AAEL000670-PA [Aedes aegypti]

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 13/118 (11%)

Query: 133 RASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFK 192
           RA  Q++    +++  + P+G            + +    YHQKYRL+ H +L   +   
Sbjct: 131 RAEEQIKRAPEKIITEIAPAG------------IFYPAEDYHQKYRLQGHRDLAKSIGLT 178

Query: 193 SEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSGMMC 250
            E  +K SH+AARLNGY++G GG++QFE++ D+LGL+ D   YVR YV+  EG G+ C
Sbjct: 179 PELLHK-SHVAARLNGYLIGVGGLEQFEKDTDRLGLNTDQAQYVRDYVRENEGGGIFC 235

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260798210|ref|XP_002594093.1| hypothetical protein BRAFLDRAFT_68465 [Branchiostoma floridae] gi|229279326|gb|EEN50104.1| hypothetical protein BRAFLDRAFT_68465 [Branchiostoma floridae]

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 65/99 (65%)

Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAE 75
           GDHTE  Q+ +DP   SY ++ +IFW++HDP+  +  QY S I + +   K +AE+++ +
Sbjct: 37  GDHTESVQIQYDPKQTSYADLFKIFWQNHDPSACVSRQYMSAIFYHDENQKALAEETMQK 96

Query: 76  EKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGN 114
           E    ++PI T +V  +RFYDAE++ ++  LR++R + N
Sbjct: 97  ESGGRKRPIQTKIVAAERFYDAEDYHQKYLLRQQRGLFN 135

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312069578|ref|XP_003137747.1| peptide methionine sulfoxide reductase [Loa loa] gi|307767089|gb|EFO26323.1| peptide methionine sulfoxide reductase [Loa loa]

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 21/163 (12%)

Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAE 75
           GDHTEVT+V FD  +ISY +IL  FW+HH+PT + K QY+S IL+V+ + KE+A++SL +
Sbjct: 48  GDHTEVTEVQFDEKIISYDKILNYFWEHHNPTTEYKKQYKSAILYVDDQQKEMAKESLKK 107

Query: 76  EKTKH-RKPITTLVVPFKRFYDAEEWPRRVSLR------RRRNIGNP---SPHLS----- 120
            + K+  K + T V    +FY AE++ ++  LR      ++ N+ N    S  L+     
Sbjct: 108 IQEKYGSKKLDTYVQKLVQFYQAEDYHQKYWLRCQTAIFKKLNLNNEEVVSSLLATKMNA 167

Query: 121 ----YRSHDSMTRKTLRASAQVELQERRLLQNLPPSGTPERLC 159
               Y + D +  K L    Q++     L++N+  +G     C
Sbjct: 168 FLAGYTNFDVL--KQLADQYQLDEDVITLIKNIAVTGGDTSAC 208

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
WB|WBGene00018393	207	msra-1 [Caenorhabditis elegans	0.372	0.449	0.436	1.9e-19
FB|FBgn0000565	246	Eip71CD "Ecdysone-induced prot	0.432	0.439	0.405	6.7e-17
TIGR_CMR|GSU_3161	162	GSU_3161 "peptide methionine s	0.36	0.555	0.383	2.3e-14
TIGR_CMR|SO_2337	159	SO_2337 "peptide methionine su	0.4	0.628	0.407	3e-14
ASPGD|ASPL0000072011	213	msrA [Emericella nidulans (tax	0.368	0.431	0.362	7.9e-14
TAIR|locus:2151646	202	PMSR1 "AT5G61640" [Arabidopsis	0.368	0.455	0.353	1e-13
TAIR|locus:2183409	218	PMSR2 "AT5G07460" [Arabidopsis	0.372	0.426	0.36	2.1e-13
TIGR_CMR|DET_1241	176	DET_1241 "peptide methionine s	0.384	0.545	0.342	4.4e-13
UNIPROTKB|Q9KP30	212	msrA "Peptide methionine sulfo	0.36	0.424	0.396	1.2e-12
TIGR_CMR|VC_2549	212	VC_2549 "peptide methionine su	0.36	0.424	0.396	1.2e-12

WB|WBGene00018393 msra-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 41/94 (43%), Positives = 63/94 (67%)

Query:    17 DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLAEE 76
             DHTE+T++ FDP VI Y ++   FWKHH+P  + K QY+S IL+VN + K+VAE++L   
Sbjct:    48 DHTEITEITFDPKVIEYSKLTNFFWKHHNPAERRKKQYQSAILYVNDDQKKVAEETLKVA 107

Query:    77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRR 110
             K KH   I T + P  +FY AE++ ++   R+++
Sbjct:   108 KDKHGD-IETYIEPLDKFYQAEDYHQKYWFRQKK 140

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0033744 "L-methionine-(S)-S-oxide reductase activity" evidence=IDA

FB|FBgn0000565 Eip71CD "Ecdysone-induced protein 28/29kD" [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 47/116 (40%), Positives = 73/116 (62%)

Query:    16 GDHTEVTQVDFDPSVISYKEILRIFWKHHDP--TVQMKTQYRSMILHVNPEDKEVAEKSL 73
             GDHTEV ++D+DP+VIS+KE+L +FW +H+   T  +K QY S+IL+ + E K+VA  S 
Sbjct:    83 GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTTPIKRQYASLILYHDEEQKQVAHASK 142

Query:    74 AEEKTKHRKP--ITTLVVPFKRFYDAEEWPRRVSLRRRRNIG---NPSPHLSYRSH 124
              EE+ + R P  ITT +   + FY AE + ++  L+  +++    N SP L   S+
Sbjct:   143 LEEQER-RAPEIITTEIASKENFYPAEAYHQKYRLQGHKDLASSLNLSPKLLQTSY 197

GO:0000096 "sulfur amino acid metabolic process" evidence=NAS

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS;NAS;IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IEP

GO:0008340 "determination of adult lifespan" evidence=IMP

TIGR_CMR|GSU_3161 GSU_3161 "peptide methionine sulfoxide reductase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/99 (38%), Positives = 59/99 (59%)

Query:    10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMILHVNP 63
             +C+  +G H EV +V FDP+ ++Y  +LR+FW  HDPT        + T YRS+I + +P
Sbjct:    50 VCSKTTG-HAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSP 108

Query:    64 EDKEVAEKSLAEEKT--KHRKPITTLVVPFKRFYDAEEW 100
             + +  A  SL  E+   +H +PI T +VP   F+ AEE+
Sbjct:   109 DQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEEY 147

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0030091 "protein repair" evidence=ISS

TIGR_CMR|SO_2337 SO_2337 "peptide methionine sulfoxide reductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 46/113 (40%), Positives = 68/113 (60%)

Query:    18 HTEVTQVDFDPSVISYKEILRIFWKHHDPT-VQMK-----TQYRSMILHVNPEDKEVAEK 71
             H EV QV+FDP+++SY E+L +FWK+H+PT + M+     TQYRS I   + E K  AE 
Sbjct:    51 HAEVVQVEFDPTIVSYDELLEVFWKNHNPTTLNMQGGDIGTQYRSTIFFHDREQKAAAEA 110

Query:    72 S-LAEEKTKH--RKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSY 121
             S LA  ++     + I T +VP ++F+ AEE+ +      + N+  PS HL Y
Sbjct:   111 SKLAFARSGRWGLRHIVTEIVPLQQFHVAEEYHQNYI--DKNNL--PSCHLEY 159

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0030091 "protein repair" evidence=ISS

ASPGD|ASPL0000072011 msrA [Emericella nidulans (taxid:162425)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 37/102 (36%), Positives = 66/102 (64%)

Query:     7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
             +R +CT  +G H E  ++ FDPS++SY+ +L  F++ HDPT + +      TQYRS I  
Sbjct:    87 YRAVCTGDTG-HAEALKITFDPSLVSYRSLLEFFYRMHDPTTKNQQGPDVGTQYRSAIFT 145

Query:    61 VNPEDKEVAEKSLAEEKTK--HRKPITTLVVPFKRFYDAEEW 100
                E  ++AE S+ E+ +K  +++P++T ++P  +++DAEE+
Sbjct:   146 HGDEQHKIAE-SVTEKVSKEWYKQPLSTEIIPAGQWWDAEEY 186

GO:0034599 "cellular response to oxidative stress" evidence=IEP;IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

TAIR|locus:2151646 PMSR1 "AT5G61640" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 35/99 (35%), Positives = 59/99 (59%)

Query:     7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMILH 60
             ++ +C+  + +H E+ +V +DP   SY+ +L +FW  HDPT        + TQYRS I  
Sbjct:    75 YKDVCSGTT-NHAEIVRVQYDPKECSYQSLLDLFWSKHDPTTLNRQGNDVGTQYRSGIYF 133

Query:    61 VNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
              NPE +++A +SL   + +  + + T ++P K+FY AEE
Sbjct:   134 YNPEQEKLARESLERHQQQVDRKVVTEILPAKKFYRAEE 172

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=NAS

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2183409 PMSR2 "AT5G07460" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:     7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
             +  +CT  + +H EV +V +DP   +Y+ +L +FW  H+PT   +       QYRS I  
Sbjct:    91 YEDVCT-NTTNHAEVVRVQYDPKECTYETLLDLFWSRHNPTTLNRQGELLGAQYRSGIYF 149

Query:    61 VNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
               PE +++A +SL +E+ K    I T ++P K+FY AEE+
Sbjct:   150 YTPEQEKLARESLEKEQKKLEDKIVTEILPAKKFYKAEEY 189

GO:0006464 "cellular protein modification process" evidence=ISS;IDA

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS;IMP

GO:0009507 "chloroplast" evidence=ISM

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033744 "L-methionine-(S)-S-oxide reductase activity" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

TIGR_CMR|DET_1241 DET_1241 "peptide methionine sulfoxide reductase MsrA" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/105 (34%), Positives = 65/105 (61%)

Query:     7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
             ++ +C   +G H EV +++FDP+++SY ++L +F++ HDPT   +      TQYRS+I +
Sbjct:    42 YQQVCAGDTG-HAEVVKLEFDPALVSYTDLLDVFFQMHDPTTPNRQGQDIGTQYRSVIFY 100

Query:    61 VNPEDKEVAEKSLA--EEKTKHRKPITTLVVPFKRFYDAEEWPRR 103
               P  K  AE+++   +E     + I T V+P ++FY AE++ R+
Sbjct:   101 TTPAQKVQAEETIKKLDESAGFPERIVTGVLPLEKFYPAEDYHRQ 145

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0030091 "protein repair" evidence=ISS

UNIPROTKB|Q9KP30 msrA "Peptide methionine sulfoxide reductase MsrA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 40/101 (39%), Positives = 58/101 (57%)

Query:    10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
             +C+  +G HTEV +V FDP  +   E+LR FW+ HDPT  M+      TQYRS I   + 
Sbjct:    85 VCSGKTG-HTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSE 143

Query:    64 EDKEVAEKSLAEEKT----KHRKPITTLVVPFKRFYDAEEW 100
             + +E+AE S A  +     +HR  ITT ++P   +Y AE +
Sbjct:   144 DQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETY 184

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0030091 "protein repair" evidence=ISS

TIGR_CMR|VC_2549 VC_2549 "peptide methionine sulfoxide reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 40/101 (39%), Positives = 58/101 (57%)

Query:    10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
             +C+  +G HTEV +V FDP  +   E+LR FW+ HDPT  M+      TQYRS I   + 
Sbjct:    85 VCSGKTG-HTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSE 143

Query:    64 EDKEVAEKSLAEEKT----KHRKPITTLVVPFKRFYDAEEW 100
             + +E+AE S A  +     +HR  ITT ++P   +Y AE +
Sbjct:   144 DQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETY 184

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS

GO:0030091 "protein repair" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	LOW CONFIDENCE prediction!
4th Layer	1.8.4.11	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	250
pfam01625	147	pfam01625, PMSR, Peptide methionine sulfoxide redu	7e-33
COG0225	174	COG0225, MsrA, Peptide methionine sulfoxide reduct	8e-31
PRK14054	172	PRK14054, PRK14054, methionine sulfoxide reductase	1e-29
PRK13014	186	PRK13014, PRK13014, methionine sulfoxide reductase	3e-24
TIGR00401	149	TIGR00401, msrA, methionine-S-sulfoxide reductase	7e-24
PRK00058	213	PRK00058, PRK00058, methionine sulfoxide reductase	6e-22
PRK05550	283	PRK05550, PRK05550, bifunctional methionine sulfox	7e-22
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	4e-14

>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase

 Score =  116 bits (293), Expect = 7e-33
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 7/99 (7%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPT------VQMKTQYRSMILH 60
           +  +C+  +G H E  +V +DPS ISY+E+L +F++ HDPT          TQYRS I +
Sbjct: 40  YEEVCSGTTG-HAEAVRVTYDPSKISYEELLEVFFEIHDPTDLNRQGNDRGTQYRSAIFY 98

Query: 61  VNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
            + E K++AE SL   + K  KPI T + P   FY AE+
Sbjct: 99  HDEEQKKIAEASLERLQKKFGKPIVTEIEPLTTFYPAED 137

This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine. Length = 147

>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score =  111 bits (281), Expect = 8e-31
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 9/100 (9%)

Query: 8   RGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHV 61
             +C+  +G H E  +V +DP VISY+E+L +F++ HDPT   +      TQYRS I + 
Sbjct: 47  EEVCSGTTG-HAEAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYT 105

Query: 62  NPEDKEVAEKSLAEEKTKH--RKPITTLVVPFKRFYDAEE 99
           N E K +AE S+ E +     +KPI T + P K FY AEE
Sbjct: 106 NEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEE 145

Length = 174

>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional

 Score =  108 bits (273), Expect = 1e-29
 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 9/100 (9%)

Query: 8   RGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHV 61
             +C+  +G H E  ++ +DP+VISY+E+L +F++ HDPT   +      TQYRS I + 
Sbjct: 44  EQVCSGTTG-HAEAVEITYDPAVISYRELLELFFQIHDPTTLNRQGNDRGTQYRSAIFYH 102

Query: 62  NPEDKEVAEKSLAEEKTKHR--KPITTLVVPFKRFYDAEE 99
           + E KE+AE S+AE +      KPI T V P + FY+AEE
Sbjct: 103 DEEQKEIAEASIAELQASGLFDKPIVTEVEPAETFYEAEE 142

Length = 172

>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional

 Score = 95.1 bits (237), Expect = 3e-24
 Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 11/100 (11%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK-------TQYRSMILHVN 62
           +CT  +G H E  Q+ +DP  +SY+ +L+IF+  HDPT Q+         QYRS I + +
Sbjct: 51  VCTGTTG-HAEAVQITYDPKQVSYENLLQIFFSTHDPT-QLNRQGPDRGEQYRSAIFYHD 108

Query: 63  PEDKEVAEKSLA--EEKTKHRKPITTLVVPFKRFYDAEEW 100
            E K+VAE  +A  +E    +KPI T + P+K FY AE++
Sbjct: 109 EEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDY 148

Length = 186

>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase

 Score = 93.3 bits (232), Expect = 7e-24
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 9/102 (8%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
           +  +C+  +G H E  QV +DP VISY+E+L +FW+ HDPT   +      TQYRS I +
Sbjct: 40  YEEVCSGDTG-HAEAVQVTYDPKVISYEELLDVFWEIHDPTTGNRQGNDIGTQYRSGIYY 98

Query: 61  VNPEDKEVAEKSLAE--EKTKHRKPITTLVVPFKRFYDAEEW 100
            +   ++ A  S         +  PI T + P + FY AEE+
Sbjct: 99  HSDAQEKAAAASKERLQAAANYGDPIVTEIEPAENFYYAEEY 140

This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 149

>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional

 Score = 89.9 bits (224), Expect = 6e-22
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 11/102 (10%)

Query: 8   RGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHV 61
           R +C+  +G H EV +V +DP+VISY+++L++FW++HDPT  M+      TQYRS I  +
Sbjct: 86  REVCSGRTG-HAEVVRVVYDPAVISYEQLLQVFWENHDPTQGMRQGNDVGTQYRSAIYTL 144

Query: 62  NPEDKEVAEKSL----AEEKTKHRKPITTLVVPFKRFYDAEE 99
            PE    AE S              PITT + P   FY AE+
Sbjct: 145 TPEQLAAAEASREAYQQALAAAGDGPITTEIAPAPPFYYAED 186

Length = 213

>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional

 Score = 91.1 bits (227), Expect = 7e-22
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 8/96 (8%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +C+  +G H E  +V+FDP+ ISY+ +L++F++ HDPT   +      TQYRS I + + 
Sbjct: 170 VCSGTTG-HAEAVRVEFDPAKISYETLLKVFFEIHDPTQLNRQGPDIGTQYRSAIFYHDD 228

Query: 64  EDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
           E K++AEK +AE   K   P+ T V     FY AE+
Sbjct: 229 EQKQIAEKLIAELTKK-GYPVVTEVEAAGPFYPAED 263

Length = 283

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 13  VYSGD-HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPED 65
           VY    H E  +V +D   +S   IL+ +++  DPT   K      TQYRS + + +P D
Sbjct: 241 VYRHSGHAETVKVTYDADKLSLDTILQYYFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAD 300

Query: 66  KEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           K V   +L  E+ K++ P+     P K FYDAEE+
Sbjct: 301 KAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEY 335

Length = 521

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
COG0225	174	MsrA Peptide methionine sulfoxide reductase [Postt	100.0
PRK14054	172	methionine sulfoxide reductase A; Provisional	100.0
PRK13014	186	methionine sulfoxide reductase A; Provisional	100.0
PF01625	155	PMSR: Peptide methionine sulfoxide reductase; Inte	100.0
PRK00058	213	methionine sulfoxide reductase A; Provisional	100.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
TIGR00401	149	msrA methionine-S-sulfoxide reductase. This model	100.0
KOG1635|consensus	191		100.0
PRK05528	156	methionine sulfoxide reductase A; Provisional	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0

>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-44  Score=310.27  Aligned_cols=115  Identities=38%  Similarity=0.592  Sum_probs=107.5

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      +|+||||+|||+|++|+++|+++++++
T Consensus        42 ~nptY~~Vcsg~Tg-HaE~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~  120 (174)
T COG0225          42 PNPTYEEVCSGTTG-HAEAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEEL  120 (174)
T ss_pred             CCCChhhccCCCCC-ceEEEEEEeCCccccHHHHHHHHheecCCCCCCccCCcccccceeEEEEcCHHHHHHHHHHHHHH
Confidence            56999999999875 99999999999999999999999999999987      489999999999999999999999999


Q ss_pred             Hh-h-CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcccc
Q psy9119          77 KT-K-HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYR  122 (250)
Q Consensus        77 q~-k-~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~  122 (250)
                      ++ . ++++|+|||+|+++||+||||||+||+|    ||++|||++..
T Consensus       121 q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Yl~K----NP~gY~~~~~~  164 (174)
T COG0225         121 QASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKK----NPNGYCHIGLT  164 (174)
T ss_pred             HHhccCCCCeEEEeeccccCcccHHHHHHHHHh----CCCCceeeccc
Confidence            87 3 4569999999999999999999999999    89999998543

>PRK14054 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=8.5e-43  Score=299.39  Aligned_cols=125  Identities=35%  Similarity=0.542  Sum_probs=114.3

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|++++++
T Consensus        38 ~~~PtY~~Vcsg~tg-h~E~V~V~yDp~~isy~~Ll~~f~~~hDPt~~~~Qg~D~G~qYRS~If~~~~~q~~~a~~~~~~  116 (172)
T PRK14054         38 VENPTYEQVCSGTTG-HAEAVEITYDPAVISYRELLELFFQIHDPTTLNRQGNDRGTQYRSAIFYHDEEQKEIAEASIAE  116 (172)
T ss_pred             CCCCChhhcccCCCC-CeEEEEEEECCCcCCHHHHHHHHHHhCCCCccCCCCCCCCcCceeEEEeCCHHHHHHHHHHHHH
Confidence            357999999999875 99999999999999999999999999999986      47999999999999999999999999


Q ss_pred             HHhh--CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccccccchh-HHHh
Q psy9119          76 EKTK--HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSM-TRKT  131 (250)
Q Consensus        76 ~q~k--~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~dd~-lk~~  131 (250)
                      ++++  ++++|+|+|+|+.+||+||+|||+||.|    ||++||++.+..+... ||++
T Consensus       117 ~~~~~~~~~~i~Tei~~~~~Fy~AEeyHQ~Yl~k----~p~~~~~~~~~~~~~~~~~~~  171 (172)
T PRK14054        117 LQASGLFDKPIVTEVEPAETFYEAEEYHQDYLEK----NPNGYCCIFVIPPKVLKKREQ  171 (172)
T ss_pred             HHHhcccCCCcEEEEecCCCceECHHHHHHHHHh----CCCCcceeeccCHHHHHHHhc
Confidence            9876  6789999999999999999999999999    6888999988887665 5543

>PRK13014 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=2.7e-42  Score=299.78  Aligned_cols=126  Identities=32%  Similarity=0.501  Sum_probs=111.6

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|++++++
T Consensus        43 ~~nPtY~~Vcsg~tg-H~E~V~V~yDp~~iSy~~LL~~Ff~~hDPt~~~~Qg~D~G~QYRS~If~~~~eQ~~~a~~~~~~  121 (186)
T PRK13014         43 VDNPTYEQVCTGTTG-HAEAVQITYDPKQVSYENLLQIFFSTHDPTQLNRQGPDRGEQYRSAIFYHDEEQKKVAEAYIAQ  121 (186)
T ss_pred             CCCCChhhhcCCCCC-ceEEEEEEECCCcCCHHHHHHHHHHhcCCCccCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            357999999999885 99999999999999999999999999999986      47999999999999999999999999


Q ss_pred             HHhh--CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccccccchhHHHh
Q psy9119          76 EKTK--HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKT  131 (250)
Q Consensus        76 ~q~k--~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~dd~lk~~  131 (250)
                      ++++  ++++|+|+|+|+.+||+||+|||+||+|+   |.+||||+......+.+++.
T Consensus       122 ~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~k~---p~~~yc~~~~~~~~~~~~~~  176 (186)
T PRK13014        122 LDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLKKN---PTHPYIVYNDLPKGSGLKAF  176 (186)
T ss_pred             HHhccccCCCcEEEEecCCCeeeCHHHHHHHHHhC---CCCCccEEEeChhhhhHHHH
Confidence            8763  67899999999999999999999999995   56699999765433334443

>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=1.4e-41  Score=287.13  Aligned_cols=113  Identities=40%  Similarity=0.624  Sum_probs=100.2

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+|.+ ||+|||+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|++++++
T Consensus        35 ~~~PtY~~v~~g~t-gh~E~V~V~yD~~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G~qYrs~If~~~~~q~~~a~~~~~~  113 (155)
T PF01625_consen   35 TPNPTYRQVCSGRT-GHAEAVRVTYDPSVISYEELLDVFFRIHDPTQVNGQGNDRGTQYRSAIFYHDEEQKKIAEASIAE  113 (155)
T ss_dssp             SSS--HHHHHTTTT-T-EEEEEEEEETTTS-HHHHHHHHHHHS-TTSTSEETTEESGGG-EEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCcceeeecCCC-CCeEEEEEEECCCcccHHHHHHHHHHhcCCcccccccCcccccceeEEecCCHHHHHHHHHHHHH
Confidence            35699999999986 599999999999999999999999999999984      58999999999999999999999999


Q ss_pred             HHhh-CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCc
Q psy9119          76 EKTK-HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHL  119 (250)
Q Consensus        76 ~q~k-~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi  119 (250)
                      ++++ ++++|+|+|+|+++||+||+|||+||.|    +|.+|||+
T Consensus       114 ~~~~~~~~~i~tei~p~~~Fy~AE~yHQ~Yl~k----~p~~yc~~  154 (155)
T PF01625_consen  114 LQAKRFGRPIVTEIEPLKNFYPAEEYHQKYLEK----NPNGYCHY  154 (155)
T ss_dssp             HHHHTTSSSBS-EEEECEEEEEHHGGGTTHHHH----STTSTTSS
T ss_pred             HHHhcCCCCeEEEEecCCcEEECHHHHHHHHHh----CCcccEec
Confidence            9999 8899999999999999999999999999    67779997

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....

>PRK00058 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=3.5e-41  Score=298.12  Aligned_cols=115  Identities=37%  Similarity=0.580  Sum_probs=106.4

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|++++++
T Consensus        80 ~~~PtY~~VcsG~tg-H~EaV~V~YDp~~ISy~~LL~~Ff~~hDPt~~n~QG~D~G~QYRS~Ify~~~eQ~~~a~~~~~~  158 (213)
T PRK00058         80 TPNPTYREVCSGRTG-HAEVVRVVYDPAVISYEQLLQVFWENHDPTQGMRQGNDVGTQYRSAIYTLTPEQLAAAEASREA  158 (213)
T ss_pred             CCCCChhhcccCCCC-CeEEEEEEECCccCCHHHHHHHHHHhcCCcccCCCCCCCCcCceEEEEeCCHHHHHHHHHHHHH
Confidence            357999999999875 99999999999999999999999999999986      47999999999999999999999999


Q ss_pred             HHhhC----CCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccc
Q psy9119          76 EKTKH----RKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSY  121 (250)
Q Consensus        76 ~q~k~----~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~  121 (250)
                      +++++    .++|+|+|+|++.||+||+|||+||+|    +|++||||+.
T Consensus       159 ~~~~~~~~~~~~i~TeI~~~~~Fy~AEeyHQ~Yl~k----~p~~yc~~~~  204 (213)
T PRK00058        159 YQQALAAAGDGPITTEIAPAPPFYYAEDYHQQYLAK----NPNGYCGLGG  204 (213)
T ss_pred             HHHHhhhccCCCeEEEEecCCCcccCHHHHHHHHHh----CCCCccccCC
Confidence            98765    247999999999999999999999999    6889999864

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=1e-40  Score=325.49  Aligned_cols=161  Identities=26%  Similarity=0.348  Sum_probs=136.0

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+| + ||+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|++++++
T Consensus       233 ~~~PtY~~Vc~g-t-gH~E~V~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G~qYrs~I~~~~~eq~~~a~~~~~~  310 (521)
T PRK14018        233 TKNPSYEDVYRH-S-GHAETVKVTYDADKLSLDTILQYYFRVVDPTSLNKQGNDTGTQYRSGVYYTDPADKAVIAAALKR  310 (521)
T ss_pred             CCCCChhhccCC-C-CcEEEEEEEECCCcCcHHHHHHHHHHhCCCccccccCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            357999999999 5 599999999999999999999999999999975      57999999999999999999999999


Q ss_pred             HHhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcccccc-------------------------chh-HH
Q psy9119          76 EKTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSH-------------------------DSM-TR  129 (250)
Q Consensus        76 ~q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~-------------------------dd~-lk  129 (250)
                      ++++++++|+|||+|+.+||+||+|||+||.|    +|++|||+++...                         +++ +|
T Consensus       311 ~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Yl~k----~p~~yc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (521)
T PRK14018        311 EQQKYQLPLVVENEPLKNFYDAEEYHQDYLIK----NPNGYCHIDLRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELK  386 (521)
T ss_pred             HHHHcCCCeEEEEecCCCeeecHHHHHHHHHh----CCCceeEeecccccccccccccccccccccchhhccCCChHHHh
Confidence            99989999999999999999999999999999    6889999966532                         444 89


Q ss_pred             HhhhHHHHHHHHHHHH-------hhcCCCCCCcchhhccccccccccc
Q psy9119         130 KTLRASAQVELQERRL-------LQNLPPSGTPERLCRGLNNRLLFSL  170 (250)
Q Consensus       130 ~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
                      ++||++|+.+|+|.--       +.+....|+  =.|++-++-|.-|-
T Consensus       387 ~~Lt~~~y~v~~~~gtE~~f~~~~~~~~~~G~--y~c~~c~~pLf~s~  432 (521)
T PRK14018        387 RTLTEEQYQITQNAATERAFSHEYDHLFKPGI--YVDVVSGEPLFSSA  432 (521)
T ss_pred             ccCCHHHHHHHHhcCCCCCCCCCCcCCCCCEE--EEecCCCCccccCc
Confidence            9999999999998631       112222222  35666666665543

>TIGR00401 msrA methionine-S-sulfoxide reductase

Probab=100.00  E-value=1.9e-40  Score=279.01  Aligned_cols=106  Identities=35%  Similarity=0.567  Sum_probs=99.8

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+|.+ ||+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|++++++
T Consensus        35 ~~~PtY~~Vc~g~t-gh~E~V~V~yDp~~is~~~Ll~~f~~~hdPt~~~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~  113 (149)
T TIGR00401        35 TPNPTYEEVCSGDT-GHAEAVQVTYDPKVISYEELLDVFWEIHDPTQGNRQGNDIGTQYRSGIYYHSDEQEKAARASKER  113 (149)
T ss_pred             CCCCChhhcccCCC-CceEEEEEEECCCcCcHHHHHHHHHHhCCCCcCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            46799999999987 599999999999999999999999999999975      47999999999999999999999999


Q ss_pred             HHh--hCCCCcEEEeecCcCceeCcccchhHHhhh
Q psy9119          76 EKT--KHRKPITTLVVPFKRFYDAEEWPRRVSLRR  108 (250)
Q Consensus        76 ~q~--k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~  108 (250)
                      +++  .++++|+|+|+|+++||+||+|||+||+|+
T Consensus       114 ~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Yl~k~  148 (149)
T TIGR00401       114 LQAAANYGDPIVTEIEPAENFYYAEEYHQQYLKKN  148 (149)
T ss_pred             HHHhcccCCCeEEEEecCCCeeecHHHHHHHHhhC
Confidence            987  567899999999999999999999999994

This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.

>KOG1635|consensus

Probab=100.00  E-value=8.5e-40  Score=282.75  Aligned_cols=113  Identities=36%  Similarity=0.605  Sum_probs=105.7

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCCC------CCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQM------KTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~~------g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      .=|||++||+|.+ +|+|+|+|+|||++|||++||++||++||||+.+      |+||||+||+++++|.++|+.++++.
T Consensus        60 ~nPtYk~vc~~tT-~HaEvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~n~QG~D~GtQYRS~I~~~s~eq~k~A~~s~e~~  138 (191)
T KOG1635|consen   60 DNPTYKDVCSGTT-NHAEVVRVQYDPKVISYEELLDFFWSRHDPTTLNRQGNDVGTQYRSGIYTYSPEQEKLARESKERE  138 (191)
T ss_pred             CCcchhhhccCCC-CcceEEEEEeCcccccHHHHHHHHHHcCCchhhhccCCcccceeeeeeeeCCHHHHHHHHHHHHHH
Confidence            4589999999987 5999999999999999999999999999999874      69999999999999999999999999


Q ss_pred             HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCc
Q psy9119          77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHL  119 (250)
Q Consensus        77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi  119 (250)
                      |++..++|+|+|+|+++||.||||||+||.|+   ++.|||..
T Consensus       139 Q~k~~~kI~T~I~p~~kFY~AE~yHQqYl~K~---~~~Gy~~s  178 (191)
T KOG1635|consen  139 QKKWNGKIVTEILPAKKFYRAEEYHQQYLSKN---PRNGYAQS  178 (191)
T ss_pred             HhccCCcceEEEeeccchhhchHHHHHHHhhC---CCCccccc
Confidence            99989999999999999999999999999994   44888765

>PRK05528 methionine sulfoxide reductase A; Provisional

Probab=100.00  E-value=8.9e-39  Score=271.06  Aligned_cols=107  Identities=16%  Similarity=0.260  Sum_probs=98.0

Q ss_pred             cccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHHHhhCCC
Q psy9119           9 GICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEEKTKHRK   82 (250)
Q Consensus         9 ~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~q~k~~~   82 (250)
                      ++|+|.+ ||+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|+++++++++  .+
T Consensus        38 ~p~~~~t-gH~E~V~V~yDp~~isy~~LL~~f~~~hdPt~~~~Qg~D~G~QYRS~If~~d~eQ~~~a~~~~~~~~~--~~  114 (156)
T PRK05528         38 TLDGPYD-GYAECVKTHFDPRMVSITDLMGYLFEIIDPYSVNKQGNDVGEKYRTGIYSEVDDHLIEARQFIERRED--AD  114 (156)
T ss_pred             CCCCCCC-CcEEEEEEEECCCcCCHHHHHHHHHHhCCcccccccCCCCCCCceEEEEeCCHHHHHHHHHHHHHHhc--CC
Confidence            4677875 599999999999999999999999999999975      47999999999999999999999988765  46


Q ss_pred             CcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcccc
Q psy9119          83 PITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYR  122 (250)
Q Consensus        83 ~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~  122 (250)
                      +|+|+|+|+.+||+||+|||+||+|    +|.+|||++..
T Consensus       115 ~i~Tei~~~~~Fy~AE~yHQ~Yl~k----~p~~yc~~~~~  150 (156)
T PRK05528        115 KIAVEVLPLTNYVKSAEEHQDRLEK----FPEDYCHIPKD  150 (156)
T ss_pred             CeEEEEecCCCeeecHHHHHHHHHh----CCCCCcccChH
Confidence            8999999999999999999999999    68899999743

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=291.16  Aligned_cols=114  Identities=34%  Similarity=0.537  Sum_probs=104.6

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||+|.+ ||+|||+|+|||++|||++||++||++||||+.      +|+||||+|||+|++|+++|+++++++
T Consensus       163 ~nPtY~~VcsG~t-gH~EaV~V~yDp~~isy~~LL~~F~~~hDPt~~~~Qg~D~G~QYRS~If~~d~eq~~~A~~~~~~~  241 (283)
T PRK05550        163 KNPTYEQVCSGTT-GHAEAVRVEFDPAKISYETLLKVFFEIHDPTQLNRQGPDIGTQYRSAIFYHDDEQKQIAEKLIAEL  241 (283)
T ss_pred             CCCChhhcccCCC-CCeEEEEEEECCccCCHHHHHHHHHhhcCCCccCCCCCCCCcCceEEEEeCCHHHHHHHHHHHHHH
Confidence            5699999999986 599999999999999999999999999999975      579999999999999999999999999


Q ss_pred             HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccc
Q psy9119          77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSY  121 (250)
Q Consensus        77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~  121 (250)
                      +++. .+|+|+|+|+++||+||+|||+||.|+   |.++|||++.
T Consensus       242 ~~~~-~~i~TeI~~l~~Fy~AEeyHQ~Yl~k~---p~~~yc~~~~  282 (283)
T PRK05550        242 TKKG-YPVVTEVEAAGPFYPAEDYHQDYYEKH---GKQPYCHIVV  282 (283)
T ss_pred             HhcC-CceEEEEeeCCCeeECHHHHHHHHHhC---CCCCeeeeeC
Confidence            8753 489999999999999999999999995   4446999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	250
2j89_A	261	Functional And Structural Aspects Of Poplar Cytosol		1e-11
1ff3_A	211	Structure Of The Peptide Methionine Sulfoxide Reduc		2e-11
2gt3_A	212	Solution Structure And Dynamics Of The Reduced Form		2e-11
2iem_A	211	Solution Structure Of An Oxidized Form (Cys51-Cys19		3e-11
4gwb_A	168	Crystal Structure Of Putative Peptide Methionine Su		2e-10
3bqh_A	193	Structure Of The Central Domain (Msra) Of Neisseria		8e-10
3bqe_A	194	Structure Of The Central Domain (Msra) Of Neisseria		8e-10
3bqf_A	194	Structure Of The Central Domain (Msra) Of Neisseria		8e-10
3bqg_A	194	Structure Of The Central Domain (msra) Of Neisseria		9e-10
3pil_A	184	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		3e-09
3pin_B	183	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		4e-09
3pim_A	187	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		4e-09
2l90_A	212	Solution Structure Of Murine Myristoylated Msra Len		5e-09
1nwa_A	203	Structure Of Mycobacterium Tuberculosis Methionine		1e-08
1fva_A	217	Crystal Structure Of Bovine Methionine Sulfoxide Re		7e-08
1fvg_A	199	Crystal Structure Of Bovine Peptide Methionine Sulf		5e-07

>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 17  DHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMILHVNPEDKEVAE 70
           +H EV +V +DP   S+  ++ + W  HDPT        + TQYRS I +  PE ++ A+
Sbjct: 143 NHNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAK 202
Query: 71  KSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           +SL  ++    + I T ++P K+FY AEE+
Sbjct: 203 ESLERQQKLLNRKIVTEILPAKKFYRAEEY 232

>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 18/107 (16%)
Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
           +R +C+  +G H E  ++ +DPSVISY+++L++FW++HDP   M+      TQYRS I  
Sbjct: 82  YREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYP 140
Query: 61  VNPEDKEVAEKS--------LAEEKTKHRKPITTLVVPFKRFYDAEE 99
           + PE    A  S        LA +  +H   ITT +     FY AE+
Sbjct: 141 LTPEQDAAARASLERFQAAMLAADDDRH---ITTEIANATPFYYAED 184

>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 18/107 (16%)
Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
           +R +C+  +G H E  ++ +DPSVISY+++L++FW++HDP   M+      TQYRS I  
Sbjct: 83  YREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYP 141
Query: 61  VNPEDKEVAEKS--------LAEEKTKHRKPITTLVVPFKRFYDAEE 99
           + PE    A  S        LA +  +H   ITT +     FY AE+
Sbjct: 142 LTPEQDAAARASLERFQAAMLAADDDRH---ITTEIANATPFYYAED 185

>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 19/103 (18%)
Query: 13  VYSGD--HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPE 64
           V SGD  H E  ++ +DPSVISY+++L++FW++HDP   M+      TQYRS I  + PE
Sbjct: 85  VSSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPE 144
Query: 65  DKEVAEKS--------LAEEKTKHRKPITTLVVPFKRFYDAEE 99
               A  S        LA +  +H   ITT +     FY AE+
Sbjct: 145 QDAAARASLERFQAAMLAADDDRH---ITTEIANATPFYYAED 184

>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVA 69
           G H E  ++ FDP  ISY+ IL +F++ HDPT +      + T YRS I +V+ E K +A
Sbjct: 46  GTHAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIA 105
Query: 70  EKSLAEEKTKHRKP--ITTLVVPFKRFYDAE 98
           ++++A+ +     P  + T V P + F++AE
Sbjct: 106 QETIADVEASGLWPGKVVTEVEPVRDFWEAE 136

>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18  HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
           H E  +V +D   +S  +IL+ F++  DPT   K      TQYRS + + +P +K V   
Sbjct: 52  HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 111
Query: 72  SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           +L  E+ K++ P+     P K FYDAEE+
Sbjct: 112 ALKREQQKYQLPLVVENEPLKNFYDAEEY 140

>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18  HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
           H E  +V +D   +S  +IL+ F++  DPT   K      TQYRS + + +P +K V   
Sbjct: 53  HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 112
Query: 72  SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           +L  E+ K++ P+     P K FYDAEE+
Sbjct: 113 ALKREQQKYQLPLVVENEPLKNFYDAEEY 141

>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18  HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
           H E  +V +D   +S  +IL+ F++  DPT   K      TQYRS + + +P +K V   
Sbjct: 53  HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 112
Query: 72  SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           +L  E+ K++ P+     P K FYDAEE+
Sbjct: 113 ALKREQQKYQLPLVVENEPLKNFYDAEEY 141

>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18  HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
           H E  +V +D   +S  +IL+ F++  DPT   K      TQYRS + + +P +K V   
Sbjct: 53  HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 112
Query: 72  SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           +L  E+ K++ P+     P K FYDAEE+
Sbjct: 113 ALKREQQKYQLPLVVENEPLKNFYDAEEY 141

>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Reduced Form Length = 184

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 17  DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRS-MILHVNPEDKEVA 69
           D  EV QV ++P VI+ +E+   F++ HDPT          TQYRS +  H + + KE+A
Sbjct: 73  DFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELA 132
Query: 70  EKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
            K   E + K    I T++ P K FYDAEE+
Sbjct: 133 -KIKEEWQPKWGNKIATVIEPIKNFYDAEEY 162

>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 183

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 17  DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRS-MILHVNPEDKEVA 69
           D  EV QV ++P VI+ +E+   F++ HDPT          TQYRS +  H + + KE+A
Sbjct: 72  DFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELA 131
Query: 70  EKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
            K   E + K    I T++ P K FYDAEE+
Sbjct: 132 -KIKEEWQPKWGNKIATVIEPIKNFYDAEEY 161

>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Unusual Oxidized Form Length = 187

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 17  DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRS-MILHVNPEDKEVA 69
           D  EV QV ++P VI+ +E+   F++ HDPT          TQYRS +  H + + KE+A
Sbjct: 76  DFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELA 135
Query: 70  EKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
            K   E + K    I T++ P K FYDAEE+
Sbjct: 136 -KIKEEWQPKWGNKIATVIEPIKNFYDAEEY 165

>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +C+  +G H EV +V + P  IS++E+L++FW++HDPT  M+      TQYRS +   + 
Sbjct: 85  VCSEKTG-HAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSA 143
Query: 64  EDKEVAEKSLAEEK---TKHR-KPITTLVVPFKRFYDAEEW 100
              E A +S  E +   +KH   PITT +   + FY AE++
Sbjct: 144 VQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDY 184

>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVA 69
           G H E  ++ FDP+V  Y+ +L  F++ HDPT + +      T YRS I + + + K +A
Sbjct: 69  GTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIA 128
Query: 70  EKSLAEEKTKHRKP--ITTLVVPFKRFYDAE 98
             ++A+ +     P  + T V P   F++AE
Sbjct: 129 LDTIADVEASGLWPGKVVTEVSPAGDFWEAE 159

>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +C+  +G H EV +V F P  IS++E+L++FW++HDPT  M+      +QYRS I   + 
Sbjct: 94  VCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSA 152
Query: 64  E-------DKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           E        KE  +K L+E        ITT +   + FY AE++
Sbjct: 153 EHVGAALKSKEDYQKVLSEHGFGL---ITTDIREGQTFYYAEDY 193

>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +C+  +G H EV +V F P  IS++E+L++FW++HDPT   +      +QYRS I   + 
Sbjct: 86  VCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGXRQGNDHGSQYRSAIYPTSA 144
Query: 64  E-------DKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
           E        KE  +K L+E        ITT +   + FY AE++
Sbjct: 145 EHVGAALKSKEDYQKVLSEHGFGL---ITTDIREGQTFYYAEDY 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
3bqh_A	193	PILB, peptide methionine sulfoxide reductase MSRA/	2e-35
3pim_A	187	Peptide methionine sulfoxide reductase; methionine	5e-35
2j89_A	261	Methionine sulfoxide reductase A; MSRA, poplar, ox	4e-34
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	9e-33
1fvg_A	199	Peptide methionine sulfoxide reductase; oxidoreduc	3e-31
1nwa_A	203	Peptide methionine sulfoxide reductase MSRA; oxido	3e-31
1ff3_A	211	Peptide methionine sulfoxide reductase; alpha beta	5e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193

 Score =  124 bits (313), Expect = 2e-35
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +   ++G H E  +V +D   +S  +IL+ F++  DPT   K      TQYRS + + +P
Sbjct: 45  VSYRHTG-HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDP 103

Query: 64  EDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
            +K V   +L  E+ K++ P+     P K FYDAEE
Sbjct: 104 AEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEE 139

>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187

 Score =  122 bits (309), Expect = 5e-35
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +C   +    EV QV ++P VI+ +E+   F++ HDPT          TQYRS +   + 
Sbjct: 70  VCGGDTD-FAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSD 128

Query: 64  EDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
            D +   K   E + K    I T++ P K FYDAEE
Sbjct: 129 ADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEE 164

>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261

 Score =  122 bits (308), Expect = 4e-34
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +CT  +  H EV +V +DP   S+  ++ + W  HDPT   +      TQYRS I +  P
Sbjct: 137 VCTGTTN-HNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTP 195

Query: 64  EDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
           E ++ A++SL  ++    + I T ++P K+FY AEE
Sbjct: 196 EQEKAAKESLERQQKLLNRKIVTEILPAKKFYRAEE 231

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313

 Score =  120 bits (302), Expect = 9e-33
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 14/155 (9%)

Query: 13  VYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDK 66
           +   DH E  QV +D   +S +EIL  +++  DP    +       QYR+ I + +  D 
Sbjct: 45  LKETDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADL 104

Query: 67  EVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEWP----RRVSLRRRRNIGNPSPHLSYR 122
                 + E++    + I   V   + +  AE++     R+            +      
Sbjct: 105 PAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKPLID 164

Query: 123 SHDSMTRKTLRASAQVELQERRLLQNLPPSGTPER 157
           + +          A +  +  R+ Q    + T E 
Sbjct: 165 AANYEKPSQEVLKASLSEESYRVTQE---AAT-EA 195

>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199

 Score =  113 bits (285), Expect = 3e-31
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 11/100 (11%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +C+  +G H EV +V F P  IS++E+L++FW++HDPT  M+      +QYRS I   + 
Sbjct: 86  VCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSA 144

Query: 64  EDKEVAEKSLAEE----KTKHRKPITTLVVPFKRFYDAEE 99
           E    A KS  +            ITT +   + FY AE+
Sbjct: 145 EHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAED 184

>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203

 Score =  113 bits (285), Expect = 3e-31
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 8   RGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHV 61
           R   T     H E  ++ FDP+V  Y+ +L  F++ HDPT + +      T YRS I + 
Sbjct: 66  RNHGT-----HAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYF 120

Query: 62  NPEDKEVAEKSLAE--EKTKHRKPITTLVVPFKRFYDAEE 99
           + + K +A  ++A+          + T V P   F++AE 
Sbjct: 121 DEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEP 160

>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211

 Score =  113 bits (284), Expect = 5e-31
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 12/101 (11%)

Query: 10  ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
           +C+  +G H E  ++ +DPSVISY+++L++FW++HDP   M+      TQYRS I  + P
Sbjct: 85  VCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTP 143

Query: 64  EDKEVAEKSLAE-----EKTKHRKPITTLVVPFKRFYDAEE 99
           E    A  SL             + ITT +     FY AE+
Sbjct: 144 EQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAED 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 44/338 (13%), Positives = 84/338 (24%), Gaps = 133/338 (39%)

Query: 16  GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMIL---HV-NPE------- 64
            DH+   ++       S +  LR   K           Y + +L   +V N +       
Sbjct: 217 SDHSSNIKLRIH----SIQAELRRLLKSK--------PYENCLLVLLNVQNAKAWNAFNL 264

Query: 65  ---------DKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAE------EW--------P 101
                     K+V +  L+   T H     +L          E      ++        P
Sbjct: 265 SCKILLTTRFKQVTD-FLSAATTTHI----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 102 RRV-------------SLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQER----- 143
           R V             S+R      +   H++     ++   +L      E ++      
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 144 ----------RLLQNL---PPSGTPERLCRGLNNRLL---------FSLHSYHQKYRLRQ 181
                      LL  +           +   L+   L          S+ S +    L+ 
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--ELKV 437

Query: 182 HSELQPKLN------FKSEDCYKTSHLAA-RLNGYVVGFGG-----IKQFEE-------- 221
             E +  L+      +     + +  L    L+ Y     G     I+  E         
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 222 -------------------EADQLGLSEDVKNYVRKYV 240
                                  L   + +K Y + Y+
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYI 534

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
3bqh_A	193	PILB, peptide methionine sulfoxide reductase MSRA/	100.0
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0
3pim_A	187	Peptide methionine sulfoxide reductase; methionine	100.0
1ff3_A	211	Peptide methionine sulfoxide reductase; alpha beta	100.0
1fvg_A	199	Peptide methionine sulfoxide reductase; oxidoreduc	100.0
2j89_A	261	Methionine sulfoxide reductase A; MSRA, poplar, ox	100.0
4gwb_A	168	Peptide methionine sulfoxide reductase MSRA 3; str	100.0
1nwa_A	203	Peptide methionine sulfoxide reductase MSRA; oxido	100.0

>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A

Probab=100.00  E-value=1.5e-44  Score=314.21  Aligned_cols=120  Identities=30%  Similarity=0.463  Sum_probs=109.6

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||+|.+| |+|||+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|+++++++
T Consensus        38 ~nPtY~~Vc~g~tG-HaEaV~V~yDp~~isy~~LL~~f~~~hDPT~~nrQG~D~G~QYRS~If~~~~~Q~~~A~~~~~~~  116 (193)
T 3bqh_A           38 KNPSYEDVSYRHTG-HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKRE  116 (193)
T ss_dssp             SSCCHHHHHHSCCC-CEEEEEEEEETTTCCHHHHHHHHHHHSCCBGGGSSSCCTTCTTCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCChheeecCCCC-CeEEEEEEECCCcCCHHHHHHHHHHhcCCCCCCCCCCCcCccceeeeecCCHHHHHHHHHHHHHH
Confidence            56999999999875 99999999999999999999999999999985      579999999999999999999999999


Q ss_pred             HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccccccchh
Q psy9119          77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSM  127 (250)
Q Consensus        77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~dd~  127 (250)
                      +++++++|+|||+|+.+||+||+|||+||.|    ||++|||++.++.++.
T Consensus       117 ~~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----np~~Yc~~~~~~~~~~  163 (193)
T 3bqh_A          117 QQKYQLPLVVENEPLKNFYDAEEYHQDYLIK----NPNGYCHIDIRKADEP  163 (193)
T ss_dssp             HTTCSSCBCCEEEECCCEEECCGGGTTHHHH----CTTCCC---CCTTTSC
T ss_pred             HHHhCCCeEEEEecCCCeeEcHHHHHHHHHh----CCCCceeeecchhhhh
Confidence            9988999999999999999999999999999    6789999988776543

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=2.5e-44  Score=331.48  Aligned_cols=134  Identities=20%  Similarity=0.241  Sum_probs=124.7

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCCC------CCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQM------KTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~~------g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||  .+ ||+|||+|+|||++|||++||++||++||||+.+      |+||||+|||+|++|+++|+++++++
T Consensus        38 ~nPtY~~Vc--~T-GHaEaV~V~yDp~~isy~~LL~~f~~~hDPT~~nrQG~D~G~QYRS~Ify~~~~Q~~~a~~~~~~~  114 (313)
T 3e0m_A           38 ETTNYQLLK--ET-DHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQ  114 (313)
T ss_dssp             SCCCTTTHH--HH-TCEEEEEEEECTTTSCHHHHHHHHHHHSCTTCSSEETTEESGGGCCEEEESCGGGHHHHHHHHHHH
T ss_pred             CCCChhhhc--cC-CCeEEEEEEECCCcCCHHHHHHHHHhhcCCCcCCCcCCCCccccceeEecCCHHHHHHHHHHHHHH
Confidence            569999999  44 5999999999999999999999999999999874      79999999999999999999999999


Q ss_pred             HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcc-------------ccccchh-HHHhhhHHHHHHHHH
Q psy9119          77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLS-------------YRSHDSM-TRKTLRASAQVELQE  142 (250)
Q Consensus        77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~-------------~~~~dd~-lk~~l~~~~~~~~~~  142 (250)
                      +++++++|+|||+|+.+||+||+|||+||.|    ||++|||++             |.+++|+ +|++||++|+.+|++
T Consensus       115 ~~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----nP~~Yc~~~~~~~~~~~~~~~~Y~~~~~~ew~~~Lt~~qy~V~r~  190 (313)
T 3e0m_A          115 ERMLGRKIAVEVEQLRHYILAEDYHQDYLRK----NPSGYCHIDVTDADKPLIDAANYEKPSQEVLKASLSEESYRVTQE  190 (313)
T ss_dssp             HHHHSSCCCCEEEECCCEEECCGGGTTHHHH----STTCCCCSCGGGGTSCCCCGGGGCCCCHHHHHHHSCHHHHHHHHH
T ss_pred             HHhcCCCeEEEEeeccceeEcHHHHHHHHHH----CCCcceeeecccchhhhhcccccccCCHHHHHhcCCHHHHHHHHh
Confidence            9999999999999999999999999999999    678999994             4456666 999999999999998


Q ss_pred             H
Q psy9119         143 R  143 (250)
Q Consensus       143 ~  143 (250)
                      .
T Consensus       191 ~  191 (313)
T 3e0m_A          191 A  191 (313)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B

Probab=100.00  E-value=1.1e-43  Score=307.67  Aligned_cols=110  Identities=30%  Similarity=0.433  Sum_probs=101.7

Q ss_pred             CCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHHH
Q psy9119           4 ISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEEK   77 (250)
Q Consensus         4 ~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~q   77 (250)
                      .|||++||+|.+| |+|||+|+|||++|||++||++||++||||+.      +|+||||+|||+|++|+++|++++++++
T Consensus        64 ~PtY~~Vc~g~TG-HaEaV~V~yDp~~isy~~LL~~Ff~~hDPT~~nrQG~D~G~QYRS~Ify~~~~Q~~~A~~~~~~l~  142 (187)
T 3pim_A           64 SVSYKRVCGGDTD-FAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQ  142 (187)
T ss_dssp             ---CSCBTTBCTT-CEEEEEEEECTTTSCHHHHHHHHTTSSCCBTTCC-----CGGGCCEEEESSHHHHHHHHHHHHHHG
T ss_pred             CCchhhhccCCCC-CeEEEEEEECCccCCHHHHHHHHHHhcCCCcCCCCCCCcCcccceeeEeCCHHHHHHHHHHHHHHH
Confidence            4999999999875 99999999999999999999999999999986      4799999999999999999999999999


Q ss_pred             hhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCC
Q psy9119          78 TKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPH  118 (250)
Q Consensus        78 ~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yCh  118 (250)
                      ++++++|+|||+|+.+||+||||||+||.|    ||++||-
T Consensus       143 ~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----nP~~Ycc  179 (187)
T 3pim_A          143 PKWGNKIATVIEPIKNFYDAEEYHQLYLDK----NPQGYAC  179 (187)
T ss_dssp             GGGTTCBCCEEEEEEEEEEHHHHHHHHCTT----CTTCTTC
T ss_pred             HHhCCCcEEEEeeCCCeeecHHHHHHHHHH----CCCCCCC
Confidence            999999999999999999999999999999    6778873

>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A

Probab=100.00  E-value=2.3e-43  Score=310.28  Aligned_cols=114  Identities=32%  Similarity=0.492  Sum_probs=105.8

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|+++++++
T Consensus        78 ~nPtY~~VcsG~TG-HaEaV~V~yDp~~isy~~LL~~F~~~hDPT~~nrQG~D~GtQYRSaIf~~~~eQ~~~A~~~~~~~  156 (211)
T 1ff3_A           78 PNPTYREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERF  156 (211)
T ss_dssp             SSCCHHHHHHTCSC-CEEEEEEEECTTTSCHHHHHHHHHHSSCTTSSSEETTEESGGGCCEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCChhhccCCCCC-ceEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCcCccceeeeecCCHHHHHHHHHHHHHH
Confidence            56999999999875 99999999999999999999999999999986      379999999999999999999999988


Q ss_pred             Hhh-----CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccc
Q psy9119          77 KTK-----HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSY  121 (250)
Q Consensus        77 q~k-----~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~  121 (250)
                      +++     ++++|+|||+|+.+||+||||||+||.|    ||++|||++-
T Consensus       157 q~~l~~~g~~~~IvTeI~p~~~Fy~AE~YHQ~Yl~k----nP~~Yc~~~~  202 (211)
T 1ff3_A          157 QAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK----NPYGYCGIGG  202 (211)
T ss_dssp             HHHHHHTTCCCCCCCEECCCCCEEECCGGGTTHHHH----SCCCCCCCCC
T ss_pred             HHHHhhcccCCceEEEEeeCCCceeChHHHHHHHHH----CCCCCcCcCC
Confidence            775     3568999999999999999999999999    6789999853

>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*

Probab=100.00  E-value=4.4e-43  Score=306.30  Aligned_cols=111  Identities=31%  Similarity=0.444  Sum_probs=102.7

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|+++++++
T Consensus        79 ~nPtY~~Vcsg~TG-HaEaV~V~yDp~~isy~~LL~~F~~~hDPT~~nrQG~D~G~QYRS~If~~~~~Q~~~A~~~~~~~  157 (199)
T 1fvg_A           79 PNPTYKEVCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDY  157 (199)
T ss_dssp             SSCCHHHHHHTCSC-CEEEEEEEECTTTSCHHHHHHHHHHTSCTTCSSEETTEESGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCChhheecCCCC-CeEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCCChhheeccccCCHHHHHHHHHHHHHH
Confidence            56999999999875 99999999999999999999999999999986      379999999999999999999999998


Q ss_pred             HhhCC----CCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCC
Q psy9119          77 KTKHR----KPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPH  118 (250)
Q Consensus        77 q~k~~----~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yCh  118 (250)
                      ++++.    ++|+|||+|+.+||+||||||+||.|    ||++|||
T Consensus       158 q~~~~~~g~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----nP~~Yc~  199 (199)
T 1fvg_A          158 QKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSK----DPDGYCG  199 (199)
T ss_dssp             HHHHHHTTCCCCCCEECSSCCCEECCGGGTTHHHH----STTCCC-
T ss_pred             HHHHhhcCCCCeEEEEeeCCCeeECHHHHHHHHHh----CCCCCCC
Confidence            87542    58999999999999999999999999    6789997

>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}

Probab=100.00  E-value=4.2e-42  Score=309.80  Aligned_cols=116  Identities=30%  Similarity=0.494  Sum_probs=108.3

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||+|.+| |+|||+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|+++++++
T Consensus       130 ~nPTYeeVcsG~TG-HaEaV~V~YDP~~ISy~~LL~~Fw~~hDPT~~nrQG~D~GtQYRSaIfy~~eeQ~~~Ae~s~~~~  208 (261)
T 2j89_A          130 HNPTYEDVCTGTTN-HNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQ  208 (261)
T ss_dssp             SSCCHHHHHTTCSC-CEEEEEEEECTTTSCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCChhhcccCCCC-CeEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCCCccccccccCCCHHHHHHHHHHHHHH
Confidence            56999999999875 99999999999999999999999999999986      479999999999999999999999999


Q ss_pred             HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCC-------CCcccc
Q psy9119          77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPS-------PHLSYR  122 (250)
Q Consensus        77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~y-------Chi~~~  122 (250)
                      +++++++|+|||+|+.+||+||||||+||.|+   +..||       ||++++
T Consensus       209 q~~~~~~IvTEI~p~~~Fy~AEdYHQ~Yl~Kn---~~~gy~qsa~kgC~~~ir  258 (261)
T 2j89_A          209 QKLLNRKIVTEILPAKKFYRAEEYHQQYLAKG---GRFGFMQSAEKGCNDPIR  258 (261)
T ss_dssp             HTTCSSCCCCEEEECCCEEECCGGGTTTTTTT---TTTSCCCCCCTTCCSCCC
T ss_pred             HHhcCCCcEEEEecCCCeeECHHHHHHHHHHC---CCCCCcccccccCCCchh
Confidence            99888999999999999999999999999995   44567       999864

>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.1e-41  Score=290.88  Aligned_cols=114  Identities=30%  Similarity=0.451  Sum_probs=102.6

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++||     +|+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|+++++++
T Consensus        38 ~nPtY~~v~-----~HaE~V~V~yDp~~isy~~LL~~F~~~hDPT~~nrQg~D~G~QYRS~If~~~~~Q~~~a~~~~~~l  112 (168)
T 4gwb_A           38 PNATYRNHG-----THAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADV  112 (168)
T ss_dssp             TTCBTTBCT-----TCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCcccccC-----ceEEEEEEEECCCCCCHHHHHHHHHhhcCCcCcCCCCCCCCcCceEEEecCCHHHHHHHHHHHHHH
Confidence            569999998     399999999999999999999999999999986      479999999999999999999999998


Q ss_pred             Hhh--CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcccccc
Q psy9119          77 KTK--HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSH  124 (250)
Q Consensus        77 q~k--~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~  124 (250)
                      ++.  +.++|+|||+|+.+||+||+|||+||.|+   |.+++|||..++.
T Consensus       113 ~~~~~~~~~IvTei~p~~~Fy~AE~yHQ~Yl~kn---P~~y~Ch~~~~~~  159 (168)
T 4gwb_A          113 EASGLWPGKVVTEVEPVRDFWEAEPEHQNYLERY---PNGYTCHFPRPNW  159 (168)
T ss_dssp             HHHTCSSSCCCCEEEECCCEEECCGGGTTHHHHS---TTSCCCCCCCTTS
T ss_pred             HHcccCCCCEEEEEEecCCeeECHHHHHHHHHhC---CCCCccCcCCccc
Confidence            765  46799999999999999999999999994   4445599975543

>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1

Probab=100.00  E-value=1e-40  Score=292.10  Aligned_cols=125  Identities=26%  Similarity=0.390  Sum_probs=102.6

Q ss_pred             CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119           3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE   76 (250)
Q Consensus         3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~   76 (250)
                      +-|||++  +|   +|+|||+|+|||++|||++||++||++||||+.      +|+||||+|||+|++|+++|+++++++
T Consensus        61 ~nPtYe~--~G---~HaEaV~V~yDp~~iSy~~LL~~Ff~~hDPT~~nrQG~D~GtQYRSaIfy~~~eQ~~~A~~~~~~l  135 (203)
T 1nwa_A           61 PNATYRN--HG---THAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADV  135 (203)
T ss_dssp             SSCCSSC--CT---TCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCChhh--cC---CceEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCCCccccccccCCCHHHHHHHHHHHHHH
Confidence            5699999  55   399999999999999999999999999999986      479999999999999999999999999


Q ss_pred             Hhh--CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCC-CCcccc------ccchh-HHHhhhHHH
Q psy9119          77 KTK--HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPS-PHLSYR------SHDSM-TRKTLRASA  136 (250)
Q Consensus        77 q~k--~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~y-Chi~~~------~~dd~-lk~~l~~~~  136 (250)
                      ++.  ++++|+|||+|+.+||+||+|||+||.|    ||++| ||+..+      +.++- ||+.|||+.
T Consensus       136 q~~g~~~~~IvTeI~p~~~Fy~AE~YHQ~Yl~k----nP~~Y~c~~~~~~~~k~~~~a~~~~~~~~~~~~  201 (203)
T 1nwa_A          136 EASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR----YPNGYTCHFVRPGWRLPRRTAESALRASLSPEL  201 (203)
T ss_dssp             HHHCCSSSCCCCEEEECCCEEECCGGGTTHHHH----STTSCCCCCCCTTSCCSCC--------------
T ss_pred             HHhcCcCCCeEEEEecCCCEEEChHHHHHHHHh----CCCCCcccccHHHHHhhhhhhhhhhhhhcCccc
Confidence            986  6789999999999999999999999999    67788 998443      22222 777777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d1ff3a_	211	d.58.28.1 (A:) Peptide methionine sulfoxide reduct	3e-13
d1fvga_	192	d.58.28.1 (A:) Peptide methionine sulfoxide reduct	2e-10
d1nwaa_	168	d.58.28.1 (A:) Peptide methionine sulfoxide reduct	2e-08

>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

 Score = 64.3 bits (156), Expect = 3e-13
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 12/104 (11%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKT------QYRSMILH 60
           +R +C+  +G H E  ++ +DPSVISY+++L++FW++HDP   M+       QYRS I  
Sbjct: 82  YREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYP 140

Query: 61  VNPEDKEVAEKSLAEEKTK-----HRKPITTLVVPFKRFYDAEE 99
           + PE    A  SL   +         + ITT +     FY AE+
Sbjct: 141 LTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAED 184

>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
           ++ +C+  +G H EV +V F P  IS++E+L++FW++HDPT  M+      +QYRS I  
Sbjct: 77  YKEVCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYP 135

Query: 61  VNPEDKEVAEKSLAEE----KTKHRKPITTLVVPFKRFYDAEE 99
            + E    A KS  +            ITT +   + FY AE+
Sbjct: 136 TSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAED 178

>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 9   GICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVN 62
                  G H E  ++ FDP+V  Y+ +L  F++ HDPT +        T YRS I + +
Sbjct: 43  NATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFD 102

Query: 63  PEDKEVAEKSLAEEKTKHR--KPITTLVVPFKRFYDAEE 99
            + K +A  ++A+ +        + T V P   F++AE 
Sbjct: 103 EQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEP 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1ff3a_	211	Peptide methionine sulfoxide reductase {Escherichi	100.0
d1fvga_	192	Peptide methionine sulfoxide reductase {Cow (Bos t	100.0
d1nwaa_	168	Peptide methionine sulfoxide reductase {Mycobacter	100.0

>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-42  Score=302.03  Aligned_cols=116  Identities=31%  Similarity=0.476  Sum_probs=107.1

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      .|+||||+|||+|++|+++|++++++
T Consensus        77 ~~nPtY~~VcsG~Tg-H~E~V~V~yDp~~isy~~Ll~~F~~~hDPT~~n~Qg~D~G~QYRSaIf~~~~eQ~~~A~~~i~~  155 (211)
T d1ff3a_          77 TPNPTYREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLER  155 (211)
T ss_dssp             CSSCCHHHHHHTCSC-CEEEEEEEECTTTSCHHHHHHHHHHSSCTTSSSEETTEESGGGCCEECCSSHHHHHHHHHHHHH
T ss_pred             CCCCCccccccCCCC-CceeEEEEeccccCCHHHHHHHHHHhcCccccccccccCCccccceeeechhHHHHHHHHHHHH
Confidence            356999999999986 99999999999999999999999999999986      36899999999999999999999999


Q ss_pred             HHhhC-----CCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcccc
Q psy9119          76 EKTKH-----RKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYR  122 (250)
Q Consensus        76 ~q~k~-----~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~  122 (250)
                      +++++     +++|+|+|+|+.+||+||+|||+||+|    ||++|||+...
T Consensus       156 ~q~~~~~~~~~~~IvTeI~~~~~Fy~AEeyHQ~Yl~K----NP~~YC~~~~~  203 (211)
T d1ff3a_         156 FQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK----NPYGYCGIGGI  203 (211)
T ss_dssp             HHHHHHHTTCCCCCCCEECCCCCEEECCGGGTTHHHH----SCCCCCCCCCC
T ss_pred             HHHHHhhccCCCceEEEEecCCCeeeCHHHHHHHHHh----CCCCCCCCCCC
Confidence            88653     678999999999999999999999999    68899999643

>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-41  Score=290.32  Aligned_cols=111  Identities=31%  Similarity=0.445  Sum_probs=102.9

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+.      +|+||||+||++|++|+++|++++++
T Consensus        72 ~~nPtY~~Vc~g~Tg-H~E~V~V~yDp~~isy~~LL~~F~~~hDPT~~n~Qg~D~G~QYRSaIf~~~~~q~~~a~~~~~~  150 (192)
T d1fvga_          72 TPNPTYKEVCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKED  150 (192)
T ss_dssp             CSSCCHHHHHHTCSC-CEEEEEEEECTTTSCHHHHHHHHHHTSCTTCSSEETTEESGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CCCCCcceeecCCCC-CeeEEEEEEecccCCHHHHHHHHHhhcccccccceecccCccccceeehhhHHHHHHHHHHHHH
Confidence            467999999999875 99999999999999999999999999999986      47899999999999999999999988


Q ss_pred             HHhh----CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCC
Q psy9119          76 EKTK----HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSP  117 (250)
Q Consensus        76 ~q~k----~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yC  117 (250)
                      +++.    ..++|+|+|+|+++||+||+|||+||+|    ||++||
T Consensus       151 ~~~~~~~~~~~~I~TeI~~~~~Fy~AEeyHQ~Yl~k----nP~~YC  192 (192)
T d1fvga_         151 YQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSK----DPDGYC  192 (192)
T ss_dssp             HHHHHHHTTCCCCCCEECSSCCCEECCGGGTTHHHH----STTCCC
T ss_pred             HHHHHHhcCCCceEEEeecCCCEeECHHHHHHHHHH----CCCCCC
Confidence            8764    3568999999999999999999999999    678899

>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-39  Score=274.68  Aligned_cols=115  Identities=26%  Similarity=0.390  Sum_probs=104.3

Q ss_pred             CCCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHH
Q psy9119           2 SVISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAE   75 (250)
Q Consensus         2 ~~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~   75 (250)
                      .+-|||++||     +|+|||+|+|||++|||++||++||++||||+.      .|+||||+||++|++|+++|++++++
T Consensus        41 ~~~PtY~~v~-----~H~E~V~V~yDp~~is~~~Ll~~ff~~hdPt~~~~Qg~D~G~QYRS~If~~~~~Q~~~a~~~i~~  115 (168)
T d1nwaa_          41 IPNATYRNHG-----THAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIAD  115 (168)
T ss_dssp             CSSCCSSCCT-----TCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCceeeccc-----ccceEEEEEEecccccHHHHHHHHHHhcCCccccccCCCCCccceeeEEeeccchHHHHHHHHHH
Confidence            3679999998     399999999999999999999999999999986      47999999999999999999999999


Q ss_pred             HHhh--CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcccccc
Q psy9119          76 EKTK--HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSH  124 (250)
Q Consensus        76 ~q~k--~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~  124 (250)
                      +++.  ++++|+|||+|+.+||+||+|||+||+|+   |.++|||+.-.+.
T Consensus       116 ~~~~~~~~~~IvTeI~~~~~F~~AEeyHQ~Yl~Kn---p~~y~C~~~~p~~  163 (168)
T d1nwaa_         116 VEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRY---PNGYTCHFVRPGW  163 (168)
T ss_dssp             HHHHCCSSSCCCCEEEECCCEEECCGGGTTHHHHS---TTSCCCCCCCTTS
T ss_pred             HHHhhccCCceEEEEeccCCEEEcHHHHHHHHHhC---CCCceeEEecCCc
Confidence            8876  57899999999999999999999999995   5566799865444