Psyllid ID: psy9131

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MDTERMHRSTVGRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK
Secondary Structure (PSIPRED)
ccHHHHHccccEEEEccEEEEEcccEEccccccccccccccEEEEccccccccccEEEEEcccEEEEEEcccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccHEEEcccEEEEcccccccccccccEcHccEEEEEEEcccHcccccEEEcccccEEEEEEccccHHccc
Coil and Loop (DISEMBL)
mdtermhrstvgreccgkvfvdsapefqpplsqlvdfsevNMILISNYLSmlalpfitegtgfegvvyateptlqigk
Flexible Loop (DISEMBL)
mdtermhrstvgreccGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK
Low Complexity Region (SEG)
MDTERMHRSTVGRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK
Disordered region (IsUnstruct)
***********GRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATE*******
Disordered Region (DISOPRED)
*************ECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIG*
Disordered Region (DISEMBL)
**********VGRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK
Disordered Region (DISPRO)
******HRSTVGRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTERMHRSTVGRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q6DFF4	658	Integrator complex subuni	N/A	N/A	0.846	0.100	0.651	3e-19
Q8K114	658	Integrator complex subuni	yes	N/A	0.846	0.100	0.651	3e-19
Q2KJA6	658	Integrator complex subuni	yes	N/A	0.846	0.100	0.651	4e-19
Q9NV88	658	Integrator complex subuni	yes	N/A	0.846	0.100	0.651	5e-19
Q5ZKK2	658	Integrator complex subuni	yes	N/A	0.846	0.100	0.651	1e-18
A7SBF0	660	Integrator complex subuni	N/A	N/A	0.846	0.1	0.606	1e-17
Q4R5Z4	637	Integrator complex subuni	N/A	N/A	0.692	0.084	0.548	4e-12
Q54SH0	712	Integrator complex subuni	yes	N/A	0.641	0.070	0.62	4e-12

>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +EC G+VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct: 69  KECSGRVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITERTGFTGTVYATEP 128

Query: 73  TLQIGK 78
           T+QIG+
Sbjct: 129 TVQIGR 134

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.
Xenopus laevis (taxid: 8355)

>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct: 69  KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query: 73  TLQIGK 78
           T+QIG+
Sbjct: 129 TMQIGR 134

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.

Mus musculus (taxid: 10090)

>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct: 69  KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query: 73  TLQIGK 78
           T+QIG+
Sbjct: 129 TVQIGR 134

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.

Bos taurus (taxid: 9913)

>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct: 69  KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query: 73  TLQIGK 78
           T+QIG+
Sbjct: 129 TVQIGR 134

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.

Homo sapiens (taxid: 9606)

>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct: 69  KECSGHVFVDSVPEFCLPETELLDLSTVDVILISNYHCMMALPYITEYTGFTGTVYATEP 128

Query: 73  TLQIGK 78
           T+QIG+
Sbjct: 129 TVQIGR 134

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Gallus gallus (taxid: 9031)

>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +E  G++F+D+ PE  PP + L+DFS V++ILISNY  MLALPFITE +GF G +YATEP
Sbjct: 73  KEAGGRLFIDAEPEVCPPETGLIDFSMVDVILISNYHHMLALPFITEYSGFNGKIYATEP 132

Query: 73  TLQIGK 78
           T+QIG+
Sbjct: 133 TIQIGR 138

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Nematostella vectensis (taxid: 45351)

>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 8/62 (12%)

Query: 17  GKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQI 76
           G  F+D         ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEPT+QI
Sbjct: 60  GNAFLDK--------TELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEPTVQI 111

Query: 77  GK 78
           G+
Sbjct: 112 GR 113

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.

Macaca fascicularis (taxid: 9541)

>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 39/50 (78%)

Query: 29  PPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK 78
           P    + DFS ++MILISNY ++ ALPFITE T F+G +YATEPT+QIGK
Sbjct: 106 PQFEMIDDFSTIDMILISNYTNIYALPFITEYTNFQGKIYATEPTVQIGK 155

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
307189043	661	Integrator complex subunit 9 [Camponotus	0.846	0.099	0.742	3e-24
332025996	638	Integrator complex subunit 9 [Acromyrmex	0.846	0.103	0.742	3e-24
322799917	675	hypothetical protein SINV_14498 [Solenop	0.846	0.097	0.742	3e-24
307202731	608	Integrator complex subunit 9 [Harpegnath	0.846	0.108	0.727	4e-24
345498046	662	PREDICTED: LOW QUALITY PROTEIN: integrat	0.846	0.099	0.742	1e-23
350408420	661	PREDICTED: integrator complex subunit 9-	0.846	0.099	0.742	1e-23
340719906	661	PREDICTED: integrator complex subunit 9-	0.846	0.099	0.742	1e-23
380023750	661	PREDICTED: integrator complex subunit 9-	0.846	0.099	0.727	2e-23
383862659	661	PREDICTED: integrator complex subunit 9-	0.846	0.099	0.712	4e-23
357623215	635	hypothetical protein KGM_11568 [Danaus p	0.846	0.103	0.727	8e-23

>gi|307189043|gb|EFN73542.1| Integrator complex subunit 9 [Camponotus floridanus]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 60/66 (90%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL +++DFSE++ ILISNY  MLALPFITEGTGF+G++YATEP
Sbjct: 71  KECCGRVFVDSVPEFSPPLEKIIDFSEIDAILISNYTCMLALPFITEGTGFKGIIYATEP 130

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 131 TLQIGR 136

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025996|gb|EGI66149.1| Integrator complex subunit 9 [Acromyrmex echinatior]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 60/66 (90%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL +++DFSE++ ILISNY  MLALPFITEGTGF+G++YATEP
Sbjct: 48  KECCGRVFVDSVPEFTPPLEKIIDFSEIDAILISNYTCMLALPFITEGTGFKGIIYATEP 107

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 108 TLQIGR 113

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799917|gb|EFZ21058.1| hypothetical protein SINV_14498 [Solenopsis invicta]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 60/66 (90%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL +++DFSE++ ILISNY  MLALPFITEGTGF+G++YATEP
Sbjct: 72  KECCGRVFVDSVPEFTPPLEKIIDFSEIDAILISNYTCMLALPFITEGTGFKGIIYATEP 131

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 132 TLQIGR 137

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202731|gb|EFN82022.1| Integrator complex subunit 9 [Harpegnathos saltator]

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 60/66 (90%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG++FVDS PEF PPL +++DFSE++ ILISNY  MLALPFITEGTGF+G++YATEP
Sbjct: 40  KECCGRIFVDSTPEFSPPLEKIIDFSEIDAILISNYTCMLALPFITEGTGFKGIIYATEP 99

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 100 TLQIGR 105

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498046|ref|XP_003428131.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like [Nasonia vitripennis]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 59/66 (89%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL +++DFSE++ ILISNY  MLALPFITEGTGF+G +YATEP
Sbjct: 71  KECCGRVFVDSTPEFCPPLEKIIDFSEIDAILISNYTCMLALPFITEGTGFKGAIYATEP 130

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 131 TLQIGR 136

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408420|ref|XP_003488398.1| PREDICTED: integrator complex subunit 9-like isoform 2 [Bombus impatiens]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 59/66 (89%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL ++VDFSE++ ILISNY  MLALPFITE TGF+G++YATEP
Sbjct: 71  KECCGRVFVDSTPEFSPPLEKIVDFSEIDAILISNYTCMLALPFITEDTGFKGIIYATEP 130

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 131 TLQIGR 136

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719906|ref|XP_003398385.1| PREDICTED: integrator complex subunit 9-like [Bombus terrestris]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 59/66 (89%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL ++VDFSE++ ILISNY  MLALPFITE TGF+G++YATEP
Sbjct: 71  KECCGRVFVDSTPEFSPPLEKIVDFSEIDAILISNYTCMLALPFITEDTGFKGIIYATEP 130

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 131 TLQIGR 136

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023750|ref|XP_003695675.1| PREDICTED: integrator complex subunit 9-like isoform 1 [Apis florea]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 59/66 (89%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL +++DFSE++ ILISNY  MLALPFITE TGF+G++YATEP
Sbjct: 71  KECCGRVFVDSTPEFSPPLEKIIDFSEIDAILISNYTCMLALPFITEDTGFKGIIYATEP 130

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 131 TLQIGR 136

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862659|ref|XP_003706801.1| PREDICTED: integrator complex subunit 9-like [Megachile rotundata]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL +++DFSE++ ILISNY  MLALPFITE +GF+G++YATEP
Sbjct: 71  KECCGRVFVDSTPEFSPPLEKIIDFSEIDAILISNYTCMLALPFITEDSGFKGIIYATEP 130

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 131 TLQIGR 136

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623215|gb|EHJ74459.1| hypothetical protein KGM_11568 [Danaus plexippus]

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 59/66 (89%)

Query: 13  RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
           +ECCG+VFVDS PEF PPL ++VDFS++++ILISNY  M+ALPFITE TGF+G VYATEP
Sbjct: 70  KECCGRVFVDSVPEFCPPLDKVVDFSQLDVILISNYTCMMALPFITEDTGFKGQVYATEP 129

Query: 73  TLQIGK 78
           TLQIG+
Sbjct: 130 TLQIGR 135

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
FB|FBgn0036570	654	IntS9 "Integrator 9" [Drosophi	0.846	0.100	0.712	6.9e-22
UNIPROTKB|E5RG70	300	INTS9 "Integrator complex subu	0.846	0.22	0.651	1.4e-18
UNIPROTKB|E5RK47	170	INTS9 "Integrator complex subu	0.846	0.388	0.651	1.4e-18
UNIPROTKB|H0YBH8	223	INTS9 "Integrator complex subu	0.846	0.295	0.651	1.4e-18
UNIPROTKB|G3XAN1	525	INTS9 "Integrator complex subu	0.846	0.125	0.651	9e-18
MGI|MGI:1098533	658	Ints9 "integrator complex subu	0.846	0.100	0.651	1.1e-17
ZFIN|ZDB-GENE-061013-129	658	ints9 "integrator complex subu	0.846	0.100	0.651	1.1e-17
RGD|1311539	659	Ints9 "integrator complex subu	0.846	0.100	0.651	1.1e-17
UNIPROTKB|F1MMA6	658	INTS9 "Integrator complex subu	0.846	0.100	0.651	1.4e-17
UNIPROTKB|Q2KJA6	658	INTS9 "Integrator complex subu	0.846	0.100	0.651	1.4e-17

FB|FBgn0036570 IntS9 "Integrator 9" [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 6.9e-22, P = 6.9e-22
 Identities = 47/66 (71%), Positives = 60/66 (90%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             ++CCG+VFVDS PEF  P+ +++DFSEV++ILISNYL+MLALP+ITE TGF+G VYATEP
Sbjct:    70 KDCCGRVFVDSTPEFNLPMDKMLDFSEVDVILISNYLNMLALPYITENTGFKGKVYATEP 129

Query:    73 TLQIGK 78
             TLQIG+
Sbjct:   130 TLQIGR 135

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0034472 "snRNA 3'-end processing" evidence=IDA

GO:0032039 "integrator complex" evidence=ISS

GO:0016180 "snRNA processing" evidence=ISS

UNIPROTKB|E5RG70 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    69 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   129 TVQIGR 134

GO:0016180 "snRNA processing" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

UNIPROTKB|E5RK47 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    69 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   129 TVQIGR 134

GO:0016180 "snRNA processing" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

UNIPROTKB|H0YBH8 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    61 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 120

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   121 TVQIGR 126

GO:0016180 "snRNA processing" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

UNIPROTKB|G3XAN1 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 9.0e-18, P = 9.0e-18
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    69 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   129 TVQIGR 134

GO:0016180 "snRNA processing" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

MGI|MGI:1098533 Ints9 "integrator complex subunit 9" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    69 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   129 TMQIGR 134

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0016180 "snRNA processing" evidence=ISO

GO:0032039 "integrator complex" evidence=ISO

ZFIN|ZDB-GENE-061013-129 ints9 "integrator complex subunit 9" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G+VFVDS PEF  P  +L+D S +++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    69 KECSGRVFVDSQPEFCLPEKELLDLSTIDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query:    73 TLQIGK 78
             TLQIG+
Sbjct:   129 TLQIGR 134

GO:0016180 "snRNA processing" evidence=IEA

GO:0032039 "integrator complex" evidence=IEA

RGD|1311539 Ints9 "integrator complex subunit 9" [Rattus norvegicus (taxid:10116)]

 Score = 225 (84.3 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    70 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 129

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   130 TMQIGR 135

GO:0016180 "snRNA processing" evidence=IEA;ISO

GO:0032039 "integrator complex" evidence=IEA;ISO

UNIPROTKB|F1MMA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    69 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   129 TVQIGR 134

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

UNIPROTKB|Q2KJA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:    13 RECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEP 72
             +EC G VFVDS PEF  P ++L+D S V++ILISNY  M+ALP+ITE TGF G VYATEP
Sbjct:    69 KECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEP 128

Query:    73 TLQIGK 78
             T+QIG+
Sbjct:   129 TVQIGR 134

GO:0032039 "integrator complex" evidence=IEA

GO:0016180 "snRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NV88	INT9_HUMAN	No assigned EC number	0.6515	0.8461	0.1003	yes	N/A
Q5ZKK2	INT9_CHICK	No assigned EC number	0.6515	0.8461	0.1003	yes	N/A
Q8K114	INT9_MOUSE	No assigned EC number	0.6515	0.8461	0.1003	yes	N/A
Q54SH0	INT9_DICDI	No assigned EC number	0.62	0.6410	0.0702	yes	N/A
Q2KJA6	INT9_BOVIN	No assigned EC number	0.6515	0.8461	0.1003	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
COG1782	637	Predicted metal-dependent RNase, consists of a met	99.9
KOG1136|consensus	501		99.86
KOG1137|consensus	668		99.85
TIGR03675	630	arCOG00543 arCOG00543 universal archaeal KH-domain	99.84
COG1236	427	YSH1 Predicted exonuclease of the beta-lactamase f	99.81
KOG1135|consensus	764		99.62
KOG1138|consensus	653		99.61
TIGR00649	422	MG423 conserved hypothetical protein. Contains an	99.59
COG0595	555	mRNA degradation ribonucleases J1/J2 (metallo-beta	99.4
smart00849	183	Lactamase_B Metallo-beta-lactamase superfamily. Ap	99.27
PRK00055	270	ribonuclease Z; Reviewed	99.18
TIGR02108	302	PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B.	99.14
PRK02113	252	putative hydrolase; Provisional	99.14
PRK11244	250	phnP carbon-phosphorus lyase complex accessory pro	99.12
PRK05184	302	pyrroloquinoline quinone biosynthesis protein PqqB	99.12
TIGR02651	299	RNase_Z ribonuclease Z. Processing of the 3-prime	99.09
TIGR03307	238	PhnP phosphonate metabolism protein PhnP. This fam	99.08
PF00753	194	Lactamase_B: Metallo-beta-lactamase superfamily; I	99.05
TIGR02649	303	true_RNase_BN ribonuclease BN. Members of this pro	99.01
COG1237	259	Metal-dependent hydrolases of the beta-lactamase s	98.99
PRK00685	228	metal-dependent hydrolase; Provisional	98.95
PRK11921	394	metallo-beta-lactamase/flavodoxin domain-containin	98.8
PRK02126	334	ribonuclease Z; Provisional	98.66
PF12706	194	Lactamase_B_2: Beta-lactamase superfamily domain;	98.65
PRK05452	479	anaerobic nitric oxide reductase flavorubredoxin;	98.62
PRK04286	298	hypothetical protein; Provisional	98.59
COG1234	292	ElaC Metal-dependent hydrolases of the beta-lactam	98.56
COG1235	269	PhnP Metal-dependent hydrolases of the beta-lactam	98.18
TIGR00361	662	ComEC_Rec2 DNA internalization-related competence	98.12
TIGR03413	248	GSH_gloB hydroxyacylglutathione hydrolase. Members	98.1
PF13483	163	Lactamase_B_3: Beta-lactamase superfamily domain;	98.07
PRK11709	355	putative L-ascorbate 6-phosphate lactonase; Provis	97.96
PRK11539	755	ComEC family competence protein; Provisional	97.93
COG0426	388	FpaA Uncharacterized flavoproteins [Energy product	97.84
COG0491	252	GloB Zn-dependent hydrolases, including glyoxylase	97.84
COG2333	293	ComEC Predicted hydrolase (metallo-beta-lactamase	97.75
PRK10241	251	hydroxyacylglutathione hydrolase; Provisional	97.7
COG2220	258	Predicted Zn-dependent hydrolases of the beta-lact	97.53
PLN02469	258	hydroxyacylglutathione hydrolase	97.39
PLN02398	329	hydroxyacylglutathione hydrolase	97.2
PLN02962	251	hydroxyacylglutathione hydrolase	96.78
TIGR02650	277	RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me	96.69
PF02112	335	PDEase_II: cAMP phosphodiesterases class-II; Inter	95.22
KOG0813|consensus	265		94.93
COG2248	304	Predicted hydrolase (metallo-beta-lactamase superf	93.85
KOG2121|consensus	746		93.67
KOG1137|consensus	668		91.82
KOG3798|consensus	343		90.42
PF13691	63	Lactamase_B_4: tRNase Z endonuclease	84.18
KOG3592|consensus	934		82.91

>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]

Probab=99.90  E-value=2e-24  Score=167.66  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=63.1

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCC------CCCCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEec
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEF------QPPLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT   70 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~------~~p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T   70 (78)
                      +.+||||||+++++.+ ++|||||++.      ..|.+  +.+.+..+|||+|||||  |||.||+|++ .||.|+||||
T Consensus       188 g~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T  266 (637)
T COG1782         188 GFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCT  266 (637)
T ss_pred             cchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh-cCCCCCeeeC
Confidence            4689999999999988 8999999732      22322  23555689999999999  9999999995 8999999999


Q ss_pred             hhhhhcc
Q psy9131          71 EPTLQIG   77 (78)
Q Consensus        71 ~~T~~l~   77 (78)
                      +||++|.
T Consensus       267 ~PTRDlm  273 (637)
T COG1782         267 PPTRDLM  273 (637)
T ss_pred             CCcHHHH
Confidence            9999974

>KOG1136|consensus

Probab=99.86  E-value=2e-22  Score=151.83  Aligned_cols=75  Identities=24%  Similarity=0.396  Sum_probs=65.3

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCC------CCCCCCCCCCC-----CCccEEEecCCC--CcchhhhhhhccCCcceEE
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPE------FQPPLSQLVDF-----SEVNMILISNYL--SMLALPFITEGTGFEGVVY   68 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~------~~~p~~~~~~~-----~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy   68 (78)
                      .|+|||||+++.++| .+.+||||.      .+.|+++.+..     +-||+|+|||+|  |||+|||.++..||.|+||
T Consensus        12 GQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIY   91 (501)
T KOG1136|consen   12 GQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIY   91 (501)
T ss_pred             CcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceE
Confidence            589999999999999 567999982      34477765543     569999999999  9999999999999999999


Q ss_pred             echhhhhcc
Q psy9131          69 ATEPTLQIG   77 (78)
Q Consensus        69 ~T~~T~~l~   77 (78)
                      ||.||++++
T Consensus        92 Mt~PTkaic  100 (501)
T KOG1136|consen   92 MTYPTKAIC  100 (501)
T ss_pred             Eecchhhhc
Confidence            999999875

>KOG1137|consensus

Probab=99.85  E-value=1.9e-22  Score=157.52  Aligned_cols=76  Identities=30%  Similarity=0.423  Sum_probs=70.4

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcC------CCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAP------EFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~------~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      .+||||||+++|++| ++++|||.      ...+|.++.+|++.||.++|||+|  |+++|||+++|+.|+|++|||+||
T Consensus        22 g~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~T  101 (668)
T KOG1137|consen   22 GNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPT  101 (668)
T ss_pred             CcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecch
Confidence            589999999999999 56799995      356799999999999999999999  999999999999999999999999


Q ss_pred             hhccC
Q psy9131          74 LQIGK   78 (78)
Q Consensus        74 ~~l~r   78 (78)
                      +.+.|
T Consensus       102 kAi~k  106 (668)
T KOG1137|consen  102 KAIYK  106 (668)
T ss_pred             HHHHH
Confidence            98765

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein

Probab=99.84  E-value=2.3e-21  Score=152.98  Aligned_cols=75  Identities=19%  Similarity=0.325  Sum_probs=63.0

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCCC------CCCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEec
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEFQ------PPLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT   70 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~------~p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T   70 (78)
                      .++||||||++++.++ ++|||||+...      .|.+  ..+++.+||+|||||+|  |+|+||+|++ .||+|+||||
T Consensus       182 g~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~gpIY~T  260 (630)
T TIGR03675       182 GFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDGPVYCT  260 (630)
T ss_pred             cCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCCceeec
Confidence            4699999999999988 77899997432      1322  22457899999999999  9999999996 7899999999


Q ss_pred             hhhhhcc
Q psy9131          71 EPTLQIG   77 (78)
Q Consensus        71 ~~T~~l~   77 (78)
                      +||++++
T Consensus       261 ~pT~~l~  267 (630)
T TIGR03675       261 PPTRDLM  267 (630)
T ss_pred             HHHHHHH
Confidence            9999875

This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.

>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=3.1e-20  Score=140.84  Aligned_cols=76  Identities=32%  Similarity=0.460  Sum_probs=62.2

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCCCCC--CCCCCCC-CCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEFQPP--LSQLVDF-SEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~~p--~~~~~~~-~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      .++||||||++++.++ ++++|||+....+  ..+..++ .+|||++|||+|  |+|+||++++ .+|+++||||+||+.
T Consensus         8 ~~~evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~-~~~~~~v~aT~~T~~   86 (427)
T COG1236           8 AAREVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVR-NGFEGPVYATPPTAA   86 (427)
T ss_pred             ccCCcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHH-hccCCceeeccCHHH
Confidence            4789999999999998 7899999854322  3332211 179999999999  9999999997 569999999999999


Q ss_pred             ccC
Q psy9131          76 IGK   78 (78)
Q Consensus        76 l~r   78 (78)
                      +++
T Consensus        87 l~~   89 (427)
T COG1236          87 LLK   89 (427)
T ss_pred             HHH
Confidence            874

>KOG1135|consensus

Probab=99.62  E-value=5.1e-16  Score=123.62  Aligned_cols=76  Identities=21%  Similarity=0.360  Sum_probs=64.4

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCC--CCCCCCCCCC--CCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPE--FQPPLSQLVD--FSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~--~~~p~~~~~~--~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +.+=+.-|++++++| ++|||||..  +..+.+.++.  ..+||||||||+.  |+|||||++.+.|++.+||||.|+..
T Consensus        10 ~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~   89 (764)
T KOG1135|consen   10 ATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIK   89 (764)
T ss_pred             ccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhh
Confidence            455577899999999 889999963  4444444332  4889999999999  99999999999999999999999999


Q ss_pred             ccC
Q psy9131          76 IGK   78 (78)
Q Consensus        76 l~r   78 (78)
                      |||
T Consensus        90 mG~   92 (764)
T KOG1135|consen   90 MGQ   92 (764)
T ss_pred             hhh
Confidence            986

>KOG1138|consensus

Probab=99.61  E-value=7.8e-17  Score=125.57  Aligned_cols=67  Identities=63%  Similarity=1.112  Sum_probs=63.1

Q ss_pred             EEEeCCeEEEeCcCCCCCCCCCCCCCCCccEEEecCCCCcchhhhhhhccCCcceEEechhhhhccC
Q psy9131          12 GRECCGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQIGK   78 (78)
Q Consensus        12 l~e~~~~~llDcG~~~~~p~~~~~~~~~iDavliSh~HH~g~LP~l~~~~gf~g~Iy~T~~T~~l~r   78 (78)
                      +.|+.|++++|.-+++.+|....+|.++||+||||++|.+.||||+++.+||.|+||||+||.|+||
T Consensus        69 lke~~~rvfvesppe~~l~~t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGr  135 (653)
T KOG1138|consen   69 LKECCGRVFVESPPEFTLPATHLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGR  135 (653)
T ss_pred             HHHhCCceEEcCCchhccchhhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHH
Confidence            3467789999999999999999999999999999999999999999999999999999999999987

>TIGR00649 MG423 conserved hypothetical protein

Probab=99.59  E-value=3.3e-15  Score=112.12  Aligned_cols=73  Identities=16%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCCC----------CCCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCCc-c
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEFQ----------PPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFE-G   65 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~----------~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g   65 (78)
                      +++|||+||++++.++ .+|||||....          .|++..+  ...+||+|+|||+|  |+|+||+|.+.  ++ .
T Consensus         8 G~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~--~~~~   85 (422)
T TIGR00649         8 GLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHT--VGFP   85 (422)
T ss_pred             CCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHh--CCCC
Confidence            4689999999999988 56899997322          1222222  35789999999999  99999999863  44 6


Q ss_pred             eEEechhhhhc
Q psy9131          66 VVYATEPTLQI   76 (78)
Q Consensus        66 ~Iy~T~~T~~l   76 (78)
                      +||+|+.|.++
T Consensus        86 ~Vy~~~~t~~~   96 (422)
T TIGR00649        86 PIYGTPLTIAL   96 (422)
T ss_pred             eEEeCHHHHHH
Confidence            89999999865

Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases

>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]

Probab=99.40  E-value=4.5e-13  Score=105.22  Aligned_cols=75  Identities=17%  Similarity=0.254  Sum_probs=59.3

Q ss_pred             CCCcccCCeEEEEeCCeE-EEeCcCCC---CC-------CCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCCcce
Q psy9131           2 DTERMHRSTVGRECCGKV-FVDSAPEF---QP-------PLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFEGV   66 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~~~-llDcG~~~---~~-------p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~   66 (78)
                      +-+|+|++|+.+++++.+ ++|||..+   ++       |++..+  +..+|++|+|||+|  |+|+||||+.+..| .+
T Consensus        16 G~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~-~p   94 (555)
T COG0595          16 GVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLF-AP   94 (555)
T ss_pred             ChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCc-Cc
Confidence            458999999999999965 69999632   11       444322  45799999999999  99999999974332 89


Q ss_pred             EEechhhhhcc
Q psy9131          67 VYATEPTLQIG   77 (78)
Q Consensus        67 Iy~T~~T~~l~   77 (78)
                      ||+|+.|..|-
T Consensus        95 iy~s~lt~~Li  105 (555)
T COG0595          95 IYASPLTAALI  105 (555)
T ss_pred             eecCHhhHHHH
Confidence            99999998874

>smart00849 Lactamase_B Metallo-beta-lactamase superfamily

Probab=99.27  E-value=3.7e-12  Score=82.50  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=55.1

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCCCC---CCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQPP---LSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~~p---~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      .++.+++|++++.++ .+|+|||......   .+....+++||+|++||.|  |++++|.+.+.  ++.+||+++.+.+
T Consensus         1 ~~~~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~   77 (183)
T smart00849        1 LGGVGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAE   77 (183)
T ss_pred             CCccceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhH
Confidence            367889999999988 5789999532211   1222347899999999999  99999999974  6789999887764

Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.

>PRK00055 ribonuclease Z; Reviewed

Probab=99.18  E-value=7.8e-12  Score=86.92  Aligned_cols=69  Identities=13%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCC--CCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccC-----CcceEEechhhhh
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPE--FQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTG-----FEGVVYATEPTLQ   75 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~--~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~g-----f~g~Iy~T~~T~~   75 (78)
                      -.+||++++.++ ++|||||.-  .++... .+++++||+|+|||.|  |+++||.+....-     -+-+||+.+.+.+
T Consensus        18 r~~~~~li~~~~~~iLiD~G~g~~~~l~~~-~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~   96 (270)
T PRK00055         18 RNVSSILLRLGGELFLFDCGEGTQRQLLKT-GIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKE   96 (270)
T ss_pred             CCCCEEEEEECCcEEEEECCHHHHHHHHHc-CCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHH
Confidence            368999999987 678999962  111111 2577899999999999  9999998773221     1246998776654

>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B

Probab=99.14  E-value=5e-11  Score=87.26  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=53.5

Q ss_pred             cccCCeEEEEeCC--eEEEeCcCC-----CCCCCC---CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechh
Q psy9131           5 RMHRSTVGRECCG--KVFVDSAPE-----FQPPLS---QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEP   72 (78)
Q Consensus         5 ~V~~S~~l~e~~~--~~llDcG~~-----~~~p~~---~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~   72 (78)
                      .-++|+++|+.++  ++|||||+.     .+...+   ..+++++||+|||||.|  |+.+|+.|.+  +.+-+||+++.
T Consensus        35 ~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~  112 (302)
T TIGR02108        35 ARTQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEM  112 (302)
T ss_pred             cccccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHH
Confidence            5678999997644  568999982     122222   13678999999999999  9999999964  36789999999


Q ss_pred             hhh
Q psy9131          73 TLQ   75 (78)
Q Consensus        73 T~~   75 (78)
                      |.+
T Consensus       113 t~~  115 (302)
T TIGR02108       113 VLQ  115 (302)
T ss_pred             HHH
Confidence            874

This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.

>PRK02113 putative hydrolase; Provisional

Probab=99.14  E-value=4e-11  Score=83.79  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhc-cCCcceEEechhhhh
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEG-TGFEGVVYATEPTLQ   75 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~-~gf~g~Iy~T~~T~~   75 (78)
                      .-.+||++++.++ ++|||||+-... .....++.+||+|+|||.|  |+++||.+... .+.+-+||+++.+.+
T Consensus        32 ~R~~~s~li~~~~~~iLiD~G~g~~~-~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~  105 (252)
T PRK02113         32 NRLRTSALVETEGARILIDCGPDFRE-QMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAE  105 (252)
T ss_pred             cceeeEEEEEECCeEEEEECCchHHH-HHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHH
Confidence            3467999999988 678999972111 0111256889999999999  99999987531 123578999887654

>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional

Probab=99.12  E-value=1.2e-10  Score=81.72  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=50.2

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL   74 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~   74 (78)
                      .+-.+||++++.++ ++|||||.. .+..  .+++.+||+|+|||.|  |+++|+.+....+-+-+||+++.+.
T Consensus        33 ~~r~~~s~li~~~~~~iLiD~G~~-~~~~--~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~  103 (250)
T PRK11244         33 YRRRPCSALIEFNGARTLIDAGLP-DLAE--RFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPE  103 (250)
T ss_pred             CCcceeEEEEEECCCEEEEECCCh-HHhh--cCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchh
Confidence            34567899999988 788999952 1111  2567899999999999  9999987753223346899987653

>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional

Probab=99.12  E-value=1.4e-10  Score=84.54  Aligned_cols=70  Identities=20%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             CcccCCeEEEEeCC-e-EEEeCcCC--CCCCC---CC---CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131           4 ERMHRSTVGRECCG-K-VFVDSAPE--FQPPL---SQ---LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE   71 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~-~llDcG~~--~~~p~---~~---~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~   71 (78)
                      .+-++||++++.+| . +|||||+-  .++..   ..   -++..+||+|+|||+|  |+.+||.|.+  +.+-+||+++
T Consensus        35 ~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~  112 (302)
T PRK05184         35 KPRTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATP  112 (302)
T ss_pred             CcccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCH
Confidence            56789999999866 4 68999972  11111   11   1466799999999999  9999999953  4567899998


Q ss_pred             hhhh
Q psy9131          72 PTLQ   75 (78)
Q Consensus        72 ~T~~   75 (78)
                      .|.+
T Consensus       113 ~~~~  116 (302)
T PRK05184        113 AVLE  116 (302)
T ss_pred             HHHH
Confidence            8875

>TIGR02651 RNase_Z ribonuclease Z

Probab=99.09  E-value=5.9e-11  Score=84.49  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCC--CCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC-----cceEEechhhh
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPE--FQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF-----EGVVYATEPTL   74 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~--~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-----~g~Iy~T~~T~   74 (78)
                      .-..||++++.++ ++|||||.-  .++... .+++.+||+|+|||+|  |+++||.+.....+     +-+||+.+.+.
T Consensus        15 ~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~-~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~   93 (299)
T TIGR02651        15 ERNLPSIALKLNGELWLFDCGEGTQRQMLRS-GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIK   93 (299)
T ss_pred             CCCCceEEEEECCeEEEEECCHHHHHHHHHc-CCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHH
Confidence            3467999999988 678999962  111111 2466889999999999  99999988743222     24699987765


Q ss_pred             h
Q psy9131          75 Q   75 (78)
Q Consensus        75 ~   75 (78)
                      +
T Consensus        94 ~   94 (299)
T TIGR02651        94 E   94 (299)
T ss_pred             H
Confidence            4

Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.

>TIGR03307 PhnP phosphonate metabolism protein PhnP

Probab=99.08  E-value=2.3e-10  Score=79.62  Aligned_cols=66  Identities=17%  Similarity=0.151  Sum_probs=49.1

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL   74 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~   74 (78)
                      -.+||++++.++ .+|||||... ..  ..+++.+||+|+|||.|  |+++|+.+....+-+-+||+++.+.
T Consensus        25 r~~~s~~i~~~~~~iliD~G~~~-~~--~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~   93 (238)
T TIGR03307        25 RQPCSAVIEFNGARTLIDAGLTD-LA--ERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEE   93 (238)
T ss_pred             CcceEEEEEECCcEEEEECCChh-Hh--hccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHh
Confidence            457899999988 6789999521 11  12467899999999999  9999987654333356899988764

This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.

>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []

Probab=99.05  E-value=1.8e-11  Score=78.32  Aligned_cols=67  Identities=9%  Similarity=0.098  Sum_probs=49.5

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCCCCCC-----CCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPEFQPP-----LSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE   71 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~~~~p-----~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~   71 (78)
                      ++.+.+|++++.++ .+|||+|.....+     .....+.++|++||+||+|  |+|+++.+.++. -...+++..
T Consensus         2 ~~~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~-~~~~~~~~~   76 (194)
T PF00753_consen    2 GEGGSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAG-PVVIIYSSA   76 (194)
T ss_dssp             SSEEEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHT-TEEEEEEHH
T ss_pred             CCeeEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECccccccccccccccccc-ceeeeeccc
Confidence            56788999999988 5689999732221     2234678999999999999  999999999743 233444433

These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....

>TIGR02649 true_RNase_BN ribonuclease BN

Probab=99.01  E-value=2e-10  Score=82.77  Aligned_cols=70  Identities=14%  Similarity=0.141  Sum_probs=49.3

Q ss_pred             cccCCeEEEEeC-----CeEEEeCcCCC--CCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhcc---C--CcceEEec
Q psy9131           5 RMHRSTVGRECC-----GKVFVDSAPEF--QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGT---G--FEGVVYAT   70 (78)
Q Consensus         5 ~V~~S~~l~e~~-----~~~llDcG~~~--~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~---g--f~g~Iy~T   70 (78)
                      .-.-||++++.+     +++|||||.-.  ++... .+++.+||+|+|||.|  |+++||.+....   |  -+-+||+.
T Consensus        14 ~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~-~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp   92 (303)
T TIGR02649        14 TRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT-AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGP   92 (303)
T ss_pred             CCCccEEEEEccCCCCCCEEEEECCccHHHHHHHh-CCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEec
Confidence            345689999973     36789999621  11122 2577999999999999  999999765311   2  12479998


Q ss_pred             hhhhh
Q psy9131          71 EPTLQ   75 (78)
Q Consensus        71 ~~T~~   75 (78)
                      +.+.+
T Consensus        93 ~~~~~   97 (303)
T TIGR02649        93 QGIRE   97 (303)
T ss_pred             hhHHH
Confidence            87764

Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.

>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]

Probab=98.99  E-value=4.4e-10  Score=81.64  Aligned_cols=66  Identities=18%  Similarity=0.211  Sum_probs=50.5

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCC----CCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQ----PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~----~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      |-++|+|.++ ++|+|.|....    +-..--+|+++||+|+|||.|  |+|+||++.+.+.=..+||+.+-.
T Consensus        22 GfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a   94 (259)
T COG1237          22 GFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA   94 (259)
T ss_pred             ceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHH
Confidence            4567899988 78999995311    112224799999999999999  999999998755334689998755

>PRK00685 metal-dependent hydrolase; Provisional

Probab=98.95  E-value=2.2e-09  Score=73.58  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             CCCCcccCCeEEEEeCC-eEEEeCcCCCCCCCCC-CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           1 MDTERMHRSTVGRECCG-KVFVDSAPEFQPPLSQ-LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         1 ~~~~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~-~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      |+-.=+|-||++++.++ ++|+|++... .|... ..+..++|+|||||.|  |++.++.+..+  .+.+||+++-+++
T Consensus         1 m~i~~lG~s~~li~~~~~~iLiDP~~~~-~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v~~~~~~~~   76 (228)
T PRK00685          1 MKITWLGHSAFLIETGGKKILIDPFITG-NPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATVIANAELAN   76 (228)
T ss_pred             CEEEEEcceEEEEEECCEEEEECCCCCC-CCCCCCChhcCcccEEEeCCCCccccccHHHHHHh--CCCEEEEeHHHHH
Confidence            44455788999999999 7789986421 11111 1223489999999999  99988877642  4578998876554

>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional

Probab=98.80  E-value=4.9e-09  Score=78.46  Aligned_cols=69  Identities=13%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             cccCCeEEEEeCCeEEEeCcCCCCCCC----C-CCCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhhh
Q psy9131           5 RMHRSTVGRECCGKVFVDSAPEFQPPL----S-QLVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQ   75 (78)
Q Consensus         5 ~V~~S~~l~e~~~~~llDcG~~~~~p~----~-~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~~   75 (78)
                      ..+-+||+++.++.+|||+|.....+.    + ..+++++||.|++||.|  |+|++|.+.+.  | ..+||+++.+.+
T Consensus        30 g~~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~--~p~a~V~~~~~~~~  106 (394)
T PRK11921         30 GSSYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKE--IPDTPIYCTKNGAK  106 (394)
T ss_pred             ceEEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHH--CCCCEEEECHHHHH
Confidence            346679999865577899994211111    1 13567899999999999  99999999864  4 478999988764

>PRK02126 ribonuclease Z; Provisional

Probab=98.66  E-value=3.2e-08  Score=73.40  Aligned_cols=66  Identities=5%  Similarity=0.050  Sum_probs=48.5

Q ss_pred             cCCeEEEEeC--C-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC----cceEEechhhhhc
Q psy9131           7 HRSTVGRECC--G-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF----EGVVYATEPTLQI   76 (78)
Q Consensus         7 ~~S~~l~e~~--~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf----~g~Iy~T~~T~~l   76 (78)
                      .-+|+++..+  + .+|||||. ..  .+...+..+||+|+|||.|  |++++|.|.+.. +    +-+||+.+.|.++
T Consensus        15 ~dn~~~l~~~~~~~~iLiD~G~-~~--~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~-~~r~~~l~iygp~~~~~~   89 (334)
T PRK02126         15 DDPGLYVDFLFERRALLFDLGD-LH--HLPPRELLRISHIFVSHTHMDHFIGFDRLLRHC-LGRPRRLRLFGPPGFADQ   89 (334)
T ss_pred             CCcEEEEEECCCCeEEEEcCCC-HH--HHhhcCCCccCEEEEcCCChhHhCcHHHHHHHh-ccCCCCeEEEECHHHHHH
Confidence            3578888863  5 56899997 11  1222467899999999999  999999998632 2    2389998888763

>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A

Probab=98.65  E-value=6.3e-09  Score=68.77  Aligned_cols=59  Identities=15%  Similarity=0.411  Sum_probs=37.2

Q ss_pred             eEEEeCcCC-----CC-CCCCCCCCCCCccEEEecCCC--CcchhhhhhhccC-CcceEEechhhhhc
Q psy9131          18 KVFVDSAPE-----FQ-PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTG-FEGVVYATEPTLQI   76 (78)
Q Consensus        18 ~~llDcG~~-----~~-~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~g-f~g~Iy~T~~T~~l   76 (78)
                      ++|+|||+.     .. .+.....+..+||+|+|||+|  |+.+||.|....- ..++||+++.+.+.
T Consensus         2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~   69 (194)
T PF12706_consen    2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEF   69 (194)
T ss_dssp             EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHH
T ss_pred             EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHH
Confidence            578999982     12 111111133499999999999  9899887774321 11389999988764

...

>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional

Probab=98.62  E-value=3.6e-08  Score=76.07  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             cccCCeEEEEeCCeEEEeCcCCCCCC----CC-CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           5 RMHRSTVGRECCGKVFVDSAPEFQPP----LS-QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         5 ~V~~S~~l~e~~~~~llDcG~~~~~p----~~-~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      ..+.+||+++.+..+|||.|.....+    .+ ..+++.+||+|++||.|  |+|++|.|.++. -..+||+++.+.+
T Consensus        32 G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~~~~~  108 (479)
T PRK05452         32 GSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTANAID  108 (479)
T ss_pred             CcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECHHHHH
Confidence            34778999985557789999421111    11 12467899999999999  999999999742 2588999998864

>PRK04286 hypothetical protein; Provisional

Probab=98.59  E-value=2.4e-08  Score=72.63  Aligned_cols=69  Identities=14%  Similarity=0.117  Sum_probs=43.7

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCC-----CCCCCC-------------CCCCCCccEEEecCCC--Ccchhhhhhhcc---
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEF-----QPPLSQ-------------LVDFSEVNMILISNYL--SMLALPFITEGT---   61 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~-----~~p~~~-------------~~~~~~iDavliSh~H--H~g~LP~l~~~~---   61 (78)
                      +-.+|++++.++ ++|||+|...     ..|..+             ....++||+|||||.|  |++++..+.-..   
T Consensus        13 ~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~   92 (298)
T PRK04286         13 VRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDE   92 (298)
T ss_pred             ceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccc
Confidence            345999999988 7889999421     222111             1346789999999999  997765441001   


Q ss_pred             CCcceEEechhhh
Q psy9131          62 GFEGVVYATEPTL   74 (78)
Q Consensus        62 gf~g~Iy~T~~T~   74 (78)
                      .++-+||.+.++.
T Consensus        93 ~~~i~iy~~~~~~  105 (298)
T PRK04286         93 EIPKEIYKGKIVL  105 (298)
T ss_pred             cchHHHhcCceec
Confidence            1234566665543

>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]

Probab=98.56  E-value=3.1e-08  Score=72.18  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=42.2

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcC--CCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAP--EFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF   63 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~--~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf   63 (78)
                      +.+-..|.++++.++ +.|+|||-  ..++.. ..+.+.+||+|+|||.|  |+.+||-|+....|
T Consensus        15 t~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~-~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~   79 (292)
T COG1234          15 TKDRNVSSILLRLEGEKFLFDCGEGTQHQLLR-AGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSF   79 (292)
T ss_pred             cCccccceeEEEeCCeeEEEECCHhHHHHHHH-hcCChhhccEEEeeccccchhcCcHHHHHHhhc
Confidence            445566788999877 67899994  111111 23566799999999999  99999966643434

>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]

Probab=98.18  E-value=8.4e-07  Score=63.29  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             CCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131          37 FSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus        37 ~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +..+|+||+||.|  |+.++|.|.++  |.-++|+++.|..
T Consensus        60 ~~~idai~~TH~H~DHi~Gl~~l~~~--~~~~~~~~~~~~~   98 (269)
T COG1235          60 VSDLDAILLTHEHSDHIQGLDDLRRA--YTLPIYVNPGTLR   98 (269)
T ss_pred             ccccCeEEEecccHHhhcChHHHHHH--hcCCcccccceec
Confidence            3699999999999  99999999974  6678888776654

>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2

Probab=98.12  E-value=3.7e-06  Score=66.93  Aligned_cols=60  Identities=10%  Similarity=0.132  Sum_probs=44.2

Q ss_pred             CCeEEEEeCCe-EEEeCcCCCCC---------CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEec
Q psy9131           8 RSTVGRECCGK-VFVDSAPEFQP---------PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYAT   70 (78)
Q Consensus         8 ~S~~l~e~~~~-~llDcG~~~~~---------p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T   70 (78)
                      |.|++++.+++ +++|+|.....         |.......+ ||.+++||.|  |+|+++.+.++  |+ .+||..
T Consensus       450 Gdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~--~~v~~i~~~  522 (662)
T TIGR00361       450 GLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKH--HPVKRLVIP  522 (662)
T ss_pred             ceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHh--CCccEEEec
Confidence            67899999884 57999963211         223333455 9999999999  99999999864  66 567754

The role for this protein in species that are not naturally transformable is unknown.

>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase

Probab=98.10  E-value=1.7e-06  Score=61.36  Aligned_cols=61  Identities=13%  Similarity=0.017  Sum_probs=40.9

Q ss_pred             eEEEEeCC--eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131          10 TVGRECCG--KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus        10 ~~l~e~~~--~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      +|++..++  .++||+|..... ..+... ..++++|++||.|  |+|+++.+.+.  |..+||+++.+
T Consensus        12 ~yli~~~~~~~ilID~g~~~~i~~~l~~~-g~~l~~Il~TH~H~DHigG~~~l~~~--~~~~V~~~~~~   77 (248)
T TIGR03413        12 IWLLHDPDGQAAVVDPGEAEPVLDALEAR-GLTLTAILLTHHHHDHVGGVAELLEA--FPAPVYGPAEE   77 (248)
T ss_pred             EEEEEcCCCCEEEEcCCChHHHHHHHHHc-CCeeeEEEeCCCCccccCCHHHHHHH--CCCeEEecccc
Confidence            56666544  567999952110 111111 2358999999999  99999999864  55789987643

Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).

>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A

Probab=98.07  E-value=7.9e-06  Score=53.79  Aligned_cols=45  Identities=16%  Similarity=0.096  Sum_probs=28.7

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccch
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLA   53 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~   53 (78)
                      .|-||+++|.+| ++++|....  .+.+. ..+.++|+|+|||.|  |+..
T Consensus         5 lgha~~~ie~~g~~iliDP~~~--~~~~~-~~~~~~D~IlisH~H~DH~~~   52 (163)
T PF13483_consen    5 LGHASFLIETGGKRILIDPWFS--SVGYA-PPPPKADAILISHSHPDHFDP   52 (163)
T ss_dssp             EETTEEEEEETTEEEEES--TT--T--T--TSS-B-SEEEESSSSTTT-CC
T ss_pred             EEeeEEEEEECCEEEEECCCCC--ccCcc-cccCCCCEEEECCCccccCCh
Confidence            588999999999 678999842  11111 124899999999999  7654

>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional

Probab=97.96  E-value=3.1e-05  Score=58.21  Aligned_cols=40  Identities=5%  Similarity=0.071  Sum_probs=25.8

Q ss_pred             CCCCccEEEecCCC--Cc--chhhhhhhccCCcceEEechhhhh
Q psy9131          36 DFSEVNMILISNYL--SM--LALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus        36 ~~~~iDavliSh~H--H~--g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +...||+|||||.|  |+  ..+..|.+..+-..++++...+.+
T Consensus       106 ~i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~  149 (355)
T PRK11709        106 AIREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVD  149 (355)
T ss_pred             HCCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHH
Confidence            34789999999999  98  345555542222356777655543

>PRK11539 ComEC family competence protein; Provisional

Probab=97.93  E-value=1.2e-05  Score=65.10  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=43.8

Q ss_pred             CCeEEEEeCCe-EEEeCcCCCCC---------CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEec
Q psy9131           8 RSTVGRECCGK-VFVDSAPEFQP---------PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYAT   70 (78)
Q Consensus         8 ~S~~l~e~~~~-~llDcG~~~~~---------p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T   70 (78)
                      |.|.+++.+++ +++|+|.....         |....... ++|.|++||.|  |+|+++.+.++  |+ .+||..
T Consensus       511 G~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~--~~~~~i~~~  583 (755)
T PRK11539        511 GLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHA--WPMAWIRSP  583 (755)
T ss_pred             ceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHh--CCcceeecc
Confidence            67888998885 57999973211         22222334 59999999999  99999999863  54 678865

>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]

Probab=97.84  E-value=1.2e-05  Score=61.51  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCC-CCC----CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPE-FQP----PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~-~~~----p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +.++-+.||+. ++ .+|||-+-. +..    .....+|+++||.|+++|..  |+|+||.+.+... +.+|+||.+.++
T Consensus        32 ~GttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~  109 (388)
T COG0426          32 RGTTYNSYLIV-GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAAR  109 (388)
T ss_pred             CCceeeeEEEe-CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHH
Confidence            56788899999 66 568999842 110    11235799999999999999  9999999997543 699999998765


Q ss_pred             c
Q psy9131          76 I   76 (78)
Q Consensus        76 l   76 (78)
                      +
T Consensus       110 ~  110 (388)
T COG0426         110 F  110 (388)
T ss_pred             H
Confidence            4

>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]

Probab=97.84  E-value=2e-05  Score=52.72  Aligned_cols=62  Identities=16%  Similarity=0.101  Sum_probs=39.3

Q ss_pred             CCeEEEEeCC--eEEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131           8 RSTVGRECCG--KVFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE   71 (78)
Q Consensus         8 ~S~~l~e~~~--~~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~   71 (78)
                      .+++++..++  .++||+|....    . ........ +|+.|++||.|  |+|++..+.+... ..++|..+
T Consensus        25 ~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~   95 (252)
T COG0491          25 NSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPA   95 (252)
T ss_pred             ccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC-CceEEccc
Confidence            3445555533  67899997422    1 11222223 89999999999  9999998886432 35664443

>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]

Probab=97.75  E-value=6.4e-05  Score=55.48  Aligned_cols=63  Identities=6%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCC----CCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEechh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQ----PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEP   72 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~----~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~   72 (78)
                      |...+++.++ +.++|-|....    .|.+......+||.+|+||+|  |+|+++.+.+.  |+ ..+|+-.+
T Consensus        54 g~a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~--~~v~~~~i~~~  124 (293)
T COG2333          54 GLATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKT--IKVPELWIYAG  124 (293)
T ss_pred             CeEEEEeeCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhh--CCCCcEEEeCC
Confidence            4477888878 56799997311    266667788999999999999  99999999963  44 46666433

>PRK10241 hydroxyacylglutathione hydrolase; Provisional

Probab=97.70  E-value=2.2e-05  Score=55.81  Aligned_cols=61  Identities=16%  Similarity=0.066  Sum_probs=39.4

Q ss_pred             eEEEEe-CC-eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEechhh
Q psy9131          10 TVGREC-CG-KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEPT   73 (78)
Q Consensus        10 ~~l~e~-~~-~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~T   73 (78)
                      ++++.. ++ .++||.|..... ..+... -.++|+|++||.|  |+|+++.|.++  |+ .+||+...+
T Consensus        14 ~~li~~~~~~~ilIDpg~~~~vl~~l~~~-g~~l~~IllTH~H~DHigG~~~l~~~--~~~~~V~~~~~~   80 (251)
T PRK10241         14 IWVLNDEAGRCLIVDPGEAEPVLNAIAEN-NWQPEAIFLTHHHHDHVGGVKELVEK--FPQIVVYGPQET   80 (251)
T ss_pred             EEEEEcCCCcEEEECCCChHHHHHHHHHc-CCccCEEEeCCCCchhhccHHHHHHH--CCCCEEEecccc
Confidence            356654 34 467999942110 011111 1357899999999  99999999874  54 689986543

>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]

Probab=97.53  E-value=0.00018  Score=50.77  Aligned_cols=67  Identities=13%  Similarity=0.061  Sum_probs=42.5

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCCC-C-C----CCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQP-P-L----SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~~-p-~----~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      .|-||+++|.++ ++|+|=...... + .    ..+.....+|+|+|||-|  |+. .+.+..+..=+..++.++..
T Consensus        12 lGha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~-~~~~~~~~~~~~~~~~~p~~   87 (258)
T COG2220          12 LGHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLD-DETLIALRTNKAPVVVVPLG   87 (258)
T ss_pred             ecceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccC-HHHHHHHhcCCCcEEEeHHH
Confidence            578999999999 678987752111 1 1    223456789999999999  755 35544332113455555544

>PLN02469 hydroxyacylglutathione hydrolase

Probab=97.39  E-value=0.0001  Score=52.96  Aligned_cols=60  Identities=10%  Similarity=-0.076  Sum_probs=40.3

Q ss_pred             eEEEEeCC---eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEechh
Q psy9131          10 TVGRECCG---KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEP   72 (78)
Q Consensus        10 ~~l~e~~~---~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~   72 (78)
                      ||++..++   .++||.|-.... ..... ...+|++||+||.|  |+|+++.|.++  |. .+||+...
T Consensus        14 ~Yli~d~~~~~~vlIDp~~~~~il~~l~~-~g~~l~~Il~TH~H~DH~gG~~~l~~~--~~~~~V~~~~~   80 (258)
T PLN02469         14 AYLIIDESTKDAAVVDPVDPEKVLQAAHE-HGAKIKLVLTTHHHWDHAGGNEKIKKL--VPGIKVYGGSL   80 (258)
T ss_pred             EEEEEeCCCCeEEEECCCChHHHHHHHHH-cCCcccEEEecCCCCccccCHHHHHHH--CCCCEEEEech
Confidence            78886542   468998831000 00111 13579999999999  99999999874  43 68998643

>PLN02398 hydroxyacylglutathione hydrolase

Probab=97.20  E-value=0.00018  Score=53.73  Aligned_cols=61  Identities=10%  Similarity=-0.048  Sum_probs=41.4

Q ss_pred             CeEEEEeCC---eEEEeCcCCCCCCCCCC--CCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           9 STVGRECCG---KVFVDSAPEFQPPLSQL--VDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         9 S~~l~e~~~---~~llDcG~~~~~p~~~~--~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      .||++...+   .++||-|-  ..+-...  -...+|++||+||.|  |+|++..|.++  |..+||+....
T Consensus        88 y~Yli~d~~t~~~~vVDP~~--a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~--~ga~V~g~~~~  155 (329)
T PLN02398         88 YAYLLHDEDTGTVGVVDPSE--AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKAR--YGAKVIGSAVD  155 (329)
T ss_pred             EEEEEEECCCCEEEEEcCCC--HHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHh--cCCEEEEehHH
Confidence            477775432   35799773  1111110  123579999999999  99999999875  45899998654

>PLN02962 hydroxyacylglutathione hydrolase

Probab=96.78  E-value=0.00074  Score=48.51  Aligned_cols=65  Identities=6%  Similarity=-0.111  Sum_probs=41.1

Q ss_pred             cccCCeEEEEe----CC-eEEEeCcCCCCCCCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCC-cceEEech
Q psy9131           5 RMHRSTVGREC----CG-KVFVDSAPEFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATE   71 (78)
Q Consensus         5 ~V~~S~~l~e~----~~-~~llDcG~~~~~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~   71 (78)
                      ..+-.||++-.    ++ .++||.|..........+  .-.+|.+||+||.|  |+++++.|.++  | ..++|+.+
T Consensus        20 ~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~--~~~a~v~~~~   94 (251)
T PLN02962         20 ESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTK--LPGVKSIISK   94 (251)
T ss_pred             CceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHH--CCCCeEEecc
Confidence            34557888764    23 468998842100111111  12468899999999  99999999864  4 36777754

>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type

Probab=96.69  E-value=0.0011  Score=48.87  Aligned_cols=41  Identities=5%  Similarity=-0.025  Sum_probs=28.9

Q ss_pred             CeEEEe-CcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhh
Q psy9131          17 GKVFVD-SAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITE   59 (78)
Q Consensus        17 ~~~llD-cG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~   59 (78)
                      .++++| .|  ...+..-.--...++.|+|||+|  |+|+||.++.
T Consensus        19 ~~ilfD~ag--~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~   62 (277)
T TIGR02650        19 EEIIFDAAE--EGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNI   62 (277)
T ss_pred             hhheehhhc--ccchhHHhhhHhhcCEEEeecCchhhhcchHHHHh
Confidence            378899 88  23333222234778999999999  9999976654

Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.

>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3

Probab=95.22  E-value=0.054  Score=40.81  Aligned_cols=36  Identities=14%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             CCccEEEecCCC--CcchhhhhhhccCC------cceEEechhhhh
Q psy9131          38 SEVNMILISNYL--SMLALPFITEGTGF------EGVVYATEPTLQ   75 (78)
Q Consensus        38 ~~iDavliSh~H--H~g~LP~l~~~~gf------~g~Iy~T~~T~~   75 (78)
                      +.|.+.+|||+|  |+.||=.-.  .++      +-+||+.+.|.+
T Consensus        78 ~~I~~ylItH~HLDHi~gLvins--p~~~~~~~~~K~i~gl~~ti~  121 (335)
T PF02112_consen   78 NHIKGYLITHPHLDHIAGLVINS--PEDYLPNSSPKTIYGLPSTIE  121 (335)
T ss_pred             HhhheEEecCCchhhHHHHHhcC--cccccccCCCCcEEECHHHHH
Confidence            478999999999  999983222  334      357999998875

1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process

>KOG0813|consensus

Probab=94.93  E-value=0.024  Score=41.61  Aligned_cols=63  Identities=11%  Similarity=-0.033  Sum_probs=38.8

Q ss_pred             CCeEEEEeCC-eEEEeCcC----CCCCCCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCCcceEEec
Q psy9131           8 RSTVGRECCG-KVFVDSAP----EFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT   70 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~----~~~~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T   70 (78)
                      ..+||+-.+. ++..|.+-    ++-.+.....  .-.++++||.||.|  |+||+.-|.+..-..-++|..
T Consensus        13 Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~   84 (265)
T KOG0813|consen   13 NYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGG   84 (265)
T ss_pred             ceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecC
Confidence            3456776634 55566562    1111122211  34689999999999  999999999742234666654

>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]

Probab=93.85  E-value=0.064  Score=39.92  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             ccCCeEEEEeCC-eEEEeCcC-----CCCCCCCC-CC------------CCCCccEEEecCCC---Ccchhhhhhh----
Q psy9131           6 MHRSTVGRECCG-KVFVDSAP-----EFQPPLSQ-LV------------DFSEVNMILISNYL---SMLALPFITE----   59 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~-----~~~~p~~~-~~------------~~~~iDavliSh~H---H~g~LP~l~~----   59 (78)
                      |-.-|.++|+.+ +||+|-|.     .+.+|.-+ .+            -..+.|.|.|||+|   |.-..|-+++    
T Consensus        13 VRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e   92 (304)
T COG2248          13 VRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGE   92 (304)
T ss_pred             hhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhccc
Confidence            444578999999 89999995     34444211 01            14678999999999   4332332222    


Q ss_pred             --ccCCcce-EEechhhhhc
Q psy9131          60 --GTGFEGV-VYATEPTLQI   76 (78)
Q Consensus        60 --~~gf~g~-Iy~T~~T~~l   76 (78)
                        +.=|+|| +++-+||..+
T Consensus        93 ~~~eiY~gK~lLlKhPte~I  112 (304)
T COG2248          93 TAKEIYKGKLLLLKHPTENI  112 (304)
T ss_pred             chHHHhcCcEEEecCchhhh
Confidence              1224555 4456666544

>KOG2121|consensus

Probab=93.67  E-value=0.01  Score=48.76  Aligned_cols=50  Identities=14%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             CeEEEEeCC--eEEEeCcC--------CCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhh
Q psy9131           9 STVGRECCG--KVFVDSAP--------EFQPPLSQLVDFSEVNMILISNYL--SMLALPFITE   59 (78)
Q Consensus         9 S~~l~e~~~--~~llDcG~--------~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~   59 (78)
                      |.+++++..  .++||||=        .+..-... --..++-||+|||.|  |-.||+-+.+
T Consensus       462 SS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~-~~lr~LraI~ISHlHADHh~Gl~~vL~  523 (746)
T KOG2121|consen  462 SSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVD-TALRKLRAIFISHLHADHHLGLISVLQ  523 (746)
T ss_pred             EEEEEeccCCccEEeecCCchHHHHHHHhhhcchH-HHHHhHHHHHHHhhcccccccHHHHHH
Confidence            567888855  48899993        12221111 124788999999999  7777776653

>KOG1137|consensus

Probab=91.82  E-value=0.24  Score=40.26  Aligned_cols=75  Identities=12%  Similarity=0.016  Sum_probs=49.8

Q ss_pred             CCCcccCCe-EEEEeCCeEEEeCcC---CCCC-------CCCCC--CCCCCccEEEecCCC--CcchhhhhhhccCCc--
Q psy9131           2 DTERMHRST-VGRECCGKVFVDSAP---EFQP-------PLSQL--VDFSEVNMILISNYL--SMLALPFITEGTGFE--   64 (78)
Q Consensus         2 ~~~~V~~S~-~l~e~~~~~llDcG~---~~~~-------p~~~~--~~~~~iDavliSh~H--H~g~LP~l~~~~gf~--   64 (78)
                      .|++|.|.| +++|+.|-++|+.|-   +++.       |...+  .=..++-++.+.|.|  |-++||.+....--+  
T Consensus       157 ~aGhVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGG  236 (668)
T KOG1137|consen  157 HAGHVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGG  236 (668)
T ss_pred             ccchhhhheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCC
Confidence            489999999 588999989999994   2222       32221  112567778888888  999999887433222  


Q ss_pred             ---ceEEechhhhhc
Q psy9131          65 ---GVVYATEPTLQI   76 (78)
Q Consensus        65 ---g~Iy~T~~T~~l   76 (78)
                         -+|||.-.+.+|
T Consensus       237 R~L~PvFAlgrAqEL  251 (668)
T KOG1137|consen  237 RVLIPVFALGRAQEL  251 (668)
T ss_pred             ceEeeeeecchHHHH
Confidence               356666555543

>KOG3798|consensus

Probab=90.42  E-value=0.43  Score=35.82  Aligned_cols=44  Identities=25%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             ccCCeEEEEeCCeEEEeCc------------C-CCCCCCCCCCCCCCccEEEecCCC
Q psy9131           6 MHRSTVGRECCGKVFVDSA------------P-EFQPPLSQLVDFSEVNMILISNYL   49 (78)
Q Consensus         6 V~~S~~l~e~~~~~llDcG------------~-~~~~p~~~~~~~~~iDavliSh~H   49 (78)
                      .|-||.++..+|.+++|=-            | ++..|....-++.++|.+++||.|
T Consensus        86 lg~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h  142 (343)
T KOG3798|consen   86 LGHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDH  142 (343)
T ss_pred             hcceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceecccccc
Confidence            4779999999995544432            2 233344445688999999999999

>PF13691 Lactamase_B_4: tRNase Z endonuclease

Probab=84.18  E-value=1.5  Score=25.57  Aligned_cols=41  Identities=7%  Similarity=0.046  Sum_probs=29.3

Q ss_pred             CCeEEEEeCC-eEEE-eCcC--CCCCCCCCCCCCCCccEEEecCCC
Q psy9131           8 RSTVGRECCG-KVFV-DSAP--EFQPPLSQLVDFSEVNMILISNYL   49 (78)
Q Consensus         8 ~S~~l~e~~~-~~ll-DcG~--~~~~p~~~~~~~~~iDavliSh~H   49 (78)
                      +.|+++..++ |.|+ +||=  +....+ ..+...+++.|++|+..
T Consensus        12 ~p~l~l~~d~~rYlFGn~gEGtQR~~~e-~~ikl~kl~~IFlT~~~   56 (63)
T PF13691_consen   12 GPSLLLFFDSRRYLFGNCGEGTQRACNE-HKIKLSKLNDIFLTGLS   56 (63)
T ss_pred             CCEEEEEeCCceEEeccCCcHHHHHHHH-cCCCccccceEEECCCC
Confidence            3899999988 5679 8983  111122 23667999999999876

>KOG3592|consensus

Probab=82.91  E-value=0.52  Score=39.46  Aligned_cols=47  Identities=15%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             EEEeCC-eEEEeCcCCCCCCCCCCC-CCCCccEEEecCCC--Ccchhhhhh
Q psy9131          12 GRECCG-KVFVDSAPEFQPPLSQLV-DFSEVNMILISNYL--SMLALPFIT   58 (78)
Q Consensus        12 l~e~~~-~~llDcG~~~~~p~~~~~-~~~~iDavliSh~H--H~g~LP~l~   58 (78)
                      |..++| .||+|.|.+...+++..+ ....||+|||||.-  .++||=-|+
T Consensus        52 LFavnGf~iLv~GgserKS~fwklVrHldrVdaVLLthpg~dNLpginsll  102 (934)
T KOG3592|consen   52 LFAVNGFNILVNGGSERKSCFWKLVRHLDRVDAVLLTHPGADNLPGINSLL  102 (934)
T ss_pred             eEeecceEEeecCCcccccchHHHHHHHhhhhhhhhcccccCccccchHHH
Confidence            345677 455666655444444433 56899999999987  666555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
2i7t_A	459	Cleavage and polyadenylation specificity factor 73	4e-04
2i7x_A	717	Protein CFT2; polyadenylation, metallo-B-lactamase	7e-04

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 20/84 (23%)

Query: 10  TVGREC-------------CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLSML---- 52
            VGR C             CG +          P   L+D +E++++LIS+    L    
Sbjct: 22  EVGRSCIILEFKGRKIMLDCG-IHPGLEGMDALPYIDLIDPAEIDLLLISH--FHLDHCG 78

Query: 53  ALPFITEGTGFEGVVYATEPTLQI 76
           ALP+  + T F+G  + T  T  I
Sbjct: 79  ALPWFLQKTSFKGRTFMTHATKAI 102

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717

 Score = 35.2 bits (80), Expect = 7e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 16 CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNY----LSMLALPFITEGT--GFEGVVYA 69
           G          Q          E+++I++S      L   +L +    +       VYA
Sbjct: 31 PG-WNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYA 89

Query: 70 TEPTLQIGK 78
          T P + +G+
Sbjct: 90 TLPVINLGR 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
3iek_A	431	Ribonuclease TTHA0252; metallo beta lactamase fold	99.77
2i7t_A	459	Cleavage and polyadenylation specificity factor 73	99.76
2ycb_A	636	Beta-CAsp RNAse, cleavage and polyadenylation spec	99.66
2xr1_A	640	Cleavage and polyadenylation specificity factor 1	99.65
2i7x_A	717	Protein CFT2; polyadenylation, metallo-B-lactamase	99.64
3af5_A	651	Putative uncharacterized protein PH1404; archaeal	99.62
3zq4_A	555	Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat	99.61
2az4_A	429	Hypothetical protein EF2904; structural genomics,	99.55
3bk2_A	562	RNAse J, metal dependent hydrolase; endoribonuclea	99.55
3esh_A	280	Protein similar to metal-dependent hydrolase; stru	99.24
3jxp_A	321	Coenzyme PQQ synthesis protein B; alpha-beta prote	99.22
3g1p_A	258	Protein PHNP; C-P lyase, phosphodiesterase, phosph	99.2
2cbn_A	306	Ribonuclease Z; phosphodiesterase beta lactamase t	99.2
3adr_A	261	Putative uncharacterized protein ST1585; quorum se	99.19
3dha_A	254	N-acyl homoserine lactone hydrolase; zinc bimetall	99.18
1zkp_A	268	Hypothetical protein BA1088; zinc binding protein,	99.16
1y44_A	320	Ribonuclease Z; zinc-dependent metal hydrolase, hy	99.14
2r2d_A	276	AGR_PTI_140P, Zn-dependent hydrolases; lactonase,	99.13
3m8t_A	294	'BLR6230 protein; subclass B3 beta-lactamase, zinc	99.1
3zwf_A	368	Zinc phosphodiesterase ELAC protein 1; beta-lactam	99.09
3l6n_A	219	Metallo-beta-lactamase; zinc, hydolase, antibiotic	99.06
4ax1_B	303	Metallo-beta-lactamase AIM-1; hydrolase, antibioti	99.05
3md7_A	293	Beta-lactamase-like; ssgcid, hydrolase, structural	99.04
2p4z_A	284	Metal-dependent hydrolases of the beta-lactamase s	99.02
3kl7_A	235	Putative metal-dependent hydrolase; structural gen	99.0
1sml_A	269	Protein (penicillinase); metallo-beta-lactamase, a	98.99
1k07_A	263	FEZ-1 beta-lactamase; monomer with alpha-beta/BETA	98.98
3iog_A	227	Beta-lactamase; hydrolase, antibiotic resistance,	98.98
3aj3_A	274	MLR6805 protein, 4-pyridoxolactonase; Zn-protein,	98.94
2zwr_A	207	Metallo-beta-lactamase superfamily protein; hydrol	98.93
3rpc_A	264	Possible metal-dependent hydrolase; structural gen	98.91
2bib_A	547	CBPE, teichoic acid phosphorylcholine esterase/ ch	98.9
3q6v_A	233	Beta-lactamase; metalloenzyme, alpha-beta, hydrola	98.89
3hnn_A	262	Putative diflavin flavoprotein A 5; PSI-2, protein	98.88
1e5d_A	402	Rubredoxin\:oxygen oxidoreductase; oxygenreductase	98.88
1p9e_A	331	Methyl parathion hydrolase; Zn containing; 2.40A {	98.87
1ztc_A	221	Hypothetical protein TM0894; structural genomics,	98.87
1ycg_A	398	Nitric oxide reductase; DIIRON site, oxidoreductas	98.85
4hl2_A	243	Beta-lactamase NDM-1; structural genomics, PSI-bio	98.84
3bv6_A	379	Metal-dependent hydrolase; metallo protein, beta-l	98.84
2ohh_A	404	Type A flavoprotein FPRA; beta-lactamase like doma	98.83
1vjn_A	220	Zn-dependent hydrolase of metallo-beta-lactamase s	98.82
2vw8_A	303	PA1000, PQSE; quinolone signal response protein, s	98.82
2xf4_A	210	Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A	98.82
2wyl_A	360	L-ascorbate-6-phosphate lactonase ULAG; hydrolase;	98.81
1mqo_A	227	Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd	98.81
1m2x_A	223	Class B carbapenemase BLAB-1; alpha-beta/BETA-alph	98.79
2zo4_A	317	Metallo-beta-lactamase family protein; hydrolase;	98.77
4b87_A	367	DNA cross-LINK repair 1A protein; dclre1A, DCLRE,	98.77
2q9u_A	414	A-type flavoprotein; flavodoxin like, beta lactama	98.77
1a7t_A	232	Metallo-beta-lactamase; hydrolase (beta-lactamase)	98.74
2e7y_A	280	TRNAse Z; tRNA maturation, metallo-beta-lactaMSe,	98.74
1jjt_A	228	IMP-1 metallo beta-lactamase; metallo-beta-lactama	98.72
4dik_A	410	Flavoprotein; TM0755, electron transport, DI-iron	98.66
2p97_A	201	Hypothetical protein; putative metal-dependent hyd	98.56
4ad9_A	289	Lactb2, beta-lactamase-like protein 2; hydrolase,	98.53
2y8b_A	265	Metallo-B-lactamase; hydrolase, cephalosporins, an	98.51
2fhx_A	246	SPM-1; metallo-beta-lactamase, dinuclear zinc, ant	98.47
3zdk_A	336	5' exonuclease apollo; hydrolase; HET: TLA; 2.16A	98.46
4efz_A	298	Metallo-beta-lactamase family protein; structural	98.38
2qed_A	258	Hydroxyacylglutathione hydrolase; metallo-B- super	98.35
1xm8_A	254	Glyoxalase II; structural genomics, protein struct	98.32
3h3e_A	267	Uncharacterized protein TM1679; structural genomic	98.32
4eyb_A	270	Beta-lactamase NDM-1; metallo beta lactamase, anti	98.32
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	98.3
2p18_A	311	Glyoxalase II; metalloprotein, beta sandwich, alph	98.28
2gcu_A	245	Putative hydroxyacylglutathione hydrolase 3; ethyl	98.23
3r2u_A	466	Metallo-beta-lactamase family protein; structural	98.17
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	98.11
1qh5_A	260	Glyoxalase II, protein (hydroxyacylglutathione hyd	98.05
2yhe_A	668	SEC-alkyl sulfatase; hydrolase, inversion, metallo	97.31

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*

Probab=99.77  E-value=1.4e-19  Score=134.59  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=62.3

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCCCC---C--CCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEFQP---P--LSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~~---p--~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      .++|||+||++++.++ ++|||||+....   +  ....+++.+||+|+|||+|  |+|+||+|.+ .||+++||+|++|
T Consensus         8 ~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~Iy~t~~t   86 (431)
T 3iek_A            8 AAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATRAT   86 (431)
T ss_dssp             CSSSSSCCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSCEEECHHH
T ss_pred             CCCCCCCcEEEEEECCeEEEEeCCCCcchhhccchhhcCCCcccCCEEEECCCChHHhccHHHHHH-cCCCCeEEEcHHH
Confidence            3689999999999988 678999973211   1  1123678999999999999  9999999996 7899999999999


Q ss_pred             hhcc
Q psy9131          74 LQIG   77 (78)
Q Consensus        74 ~~l~   77 (78)
                      .++.
T Consensus        87 ~~l~   90 (431)
T 3iek_A           87 VLLM   90 (431)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A

Probab=99.76  E-value=2.6e-19  Score=132.96  Aligned_cols=74  Identities=30%  Similarity=0.460  Sum_probs=63.2

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCC------CCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEF------QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~------~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      +++||+||++++.++ ++|||||+..      ..|.+..+++++||+|+|||+|  |+|+||++.++.+|+++||+|++|
T Consensus        20 ~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~~~~~iy~t~~t   99 (459)
T 2i7t_A           20 GQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHAT   99 (459)
T ss_dssp             SSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHHH
T ss_pred             CCCCCCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhhhhHHHHHhcCCCCCEEechHH
Confidence            678999999999988 6789999732      2244445788999999999999  999999999778899999999999


Q ss_pred             hhc
Q psy9131          74 LQI   76 (78)
Q Consensus        74 ~~l   76 (78)
                      .++
T Consensus       100 ~~l  102 (459)
T 2i7t_A          100 KAI  102 (459)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.66  E-value=9.5e-17  Score=124.35  Aligned_cols=74  Identities=20%  Similarity=0.351  Sum_probs=61.2

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCC-------CCCCC--CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEec
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQ-------PPLSQ--LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYAT   70 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~-------~p~~~--~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T   70 (78)
                      ++++|+||++++.++ .+|||||+...       .|.+.  ..++.+||+|+|||+|  |+|+||+|.+ .+|+++||+|
T Consensus       188 ~~evg~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~-~~~~~~Iy~t  266 (636)
T 2ycb_A          188 FREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLYH-YGYDGPVYCT  266 (636)
T ss_dssp             SSSSSCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHTTHHHHHH-TTCCSCEEEC
T ss_pred             CCCCCCCEEEEEECCeEEEEeCCCCcccccchhhccccccccCCcccCcEEEECCCChHHhcCHHHHHh-cCCCCeEEEc
Confidence            578999999999988 67899997422       13332  2578999999999999  9999999996 4789999999


Q ss_pred             hhhhhcc
Q psy9131          71 EPTLQIG   77 (78)
Q Consensus        71 ~~T~~l~   77 (78)
                      ++|.++.
T Consensus       267 ~~t~~l~  273 (636)
T 2ycb_A          267 APTRDLM  273 (636)
T ss_dssp             HHHHHHH
T ss_pred             chHHHHH
Confidence            9998753

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}

Probab=99.65  E-value=1.1e-16  Score=124.24  Aligned_cols=73  Identities=19%  Similarity=0.375  Sum_probs=60.5

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCC-----CCCCC--CC-CCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQ-----PPLSQ--LV-DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE   71 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~-----~p~~~--~~-~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~   71 (78)
                      ++++|+||++++.++ .+|||||+...     .|.+.  .+ ++.+||+|+|||+|  |+|+||+|.+ .+|+++||+|+
T Consensus       192 ~~evg~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~-~~~~~~Iy~t~  270 (640)
T 2xr1_A          192 CKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFK-YGYEGPVYCTP  270 (640)
T ss_dssp             SSSSBCCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHH-TTCCSCEEECH
T ss_pred             CCCCCCcEEEEEECCeEEEEeCCCCccccccccccccccccCCcccCcEEEECCCChhhhccHHHHHh-cCCCCeEEECH
Confidence            578999999999988 67899997422     23332  14 77899999999999  9999999996 47899999999


Q ss_pred             hhhhc
Q psy9131          72 PTLQI   76 (78)
Q Consensus        72 ~T~~l   76 (78)
                      +|.++
T Consensus       271 ~t~~l  275 (640)
T 2xr1_A          271 PTRDL  275 (640)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99865

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10

Probab=99.64  E-value=6.4e-17  Score=127.58  Aligned_cols=75  Identities=17%  Similarity=0.119  Sum_probs=58.5

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCCCC---CCC----CCCCCCCccEEEecCCC--Ccchhhhhhhcc--C--CcceE
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEFQP---PLS----QLVDFSEVNMILISNYL--SMLALPFITEGT--G--FEGVV   67 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~~---p~~----~~~~~~~iDavliSh~H--H~g~LP~l~~~~--g--f~g~I   67 (78)
                      .++++++||++++.++ ++|||||+....   |..    ....+ +||+|||||+|  |+|+||+|.++.  |  ++++|
T Consensus         9 g~~ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~-~IdaVlLTH~H~DHiGgLp~L~~~~~~g~~~~~pI   87 (717)
T 2i7x_A            9 DDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIP-EIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQV   87 (717)
T ss_dssp             CSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGG-GCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEE
T ss_pred             cCCCCCCCEEEEEECCeEEEEeCCCCcccchhhhHHHHHHhcCC-CCCEEEECCCChHHHCCHHHHHHhhhhcccCCceE
Confidence            4689999999999988 678999975321   111    12334 89999999999  999999999642  2  36899


Q ss_pred             Eechhhhhcc
Q psy9131          68 YATEPTLQIG   77 (78)
Q Consensus        68 y~T~~T~~l~   77 (78)
                      |||++|.+++
T Consensus        88 Y~t~~t~~l~   97 (717)
T 2i7x_A           88 YATLPVINLG   97 (717)
T ss_dssp             EEEHHHHHHH
T ss_pred             EecchhHHHH
Confidence            9999998754

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*

Probab=99.62  E-value=1.4e-16  Score=123.88  Aligned_cols=74  Identities=22%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCC--------CCCCCC--C--CC--CCccEEEecCCC--CcchhhhhhhccC-Cc
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQ--------PPLSQL--V--DF--SEVNMILISNYL--SMLALPFITEGTG-FE   64 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~--------~p~~~~--~--~~--~~iDavliSh~H--H~g~LP~l~~~~g-f~   64 (78)
                      ++++|+||++++.++ .+|||||+...        .|.+..  +  ++  .+||+|+|||+|  |+|+||+|.+ .+ |+
T Consensus       197 ~~~vg~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiGglp~L~~-~~~~~  275 (651)
T 3af5_A          197 FREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGMLPYLFR-YNLFD  275 (651)
T ss_dssp             SSSSSCCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHTTHHHHHH-TTCCC
T ss_pred             CCCCCCcEEEEEECCcEEEEeCCCChhccccchhhcccccchhhccCcccCCCCEEEECCCChHhhcCHHHHHh-cCCCC
Confidence            578999999999988 67899997422        133221  3  56  889999999999  9999999996 66 89


Q ss_pred             ceEEechhhhhcc
Q psy9131          65 GVVYATEPTLQIG   77 (78)
Q Consensus        65 g~Iy~T~~T~~l~   77 (78)
                      ++||+|++|.++.
T Consensus       276 ~pIy~t~~t~~ll  288 (651)
T 3af5_A          276 GPIYTTPPTRDLM  288 (651)
T ss_dssp             SCEEECHHHHHHH
T ss_pred             ceEEEcHHHHHHH
Confidence            9999999998753

>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}

Probab=99.61  E-value=7.4e-16  Score=118.27  Aligned_cols=74  Identities=12%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCCCC----------CCCC--CCCCCCccEEEecCCC--CcchhhhhhhccCCcce
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEFQP----------PLSQ--LVDFSEVNMILISNYL--SMLALPFITEGTGFEGV   66 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~~----------p~~~--~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~   66 (78)
                      .++|||+||++++.++ .+|||||+.+..          |++.  ..++.+||+|+|||+|  |+|+||+|.++  |+.+
T Consensus        16 g~~eiG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHiggl~~l~~~--~~~p   93 (555)
T 3zq4_A           16 GLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQ--VNIP   93 (555)
T ss_dssp             SBSSSSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHTTHHHHHTT--CCCC
T ss_pred             CCCccCCEEEEEEECCeEEEEeCCCCCCccccccccccccCHHHHhcCccCCCEEEECCCchhhhCCHHHHHHh--cCce
Confidence            3679999999999988 568999973211          2222  1367999999999999  99999999963  7899


Q ss_pred             EEechhhhhcc
Q psy9131          67 VYATEPTLQIG   77 (78)
Q Consensus        67 Iy~T~~T~~l~   77 (78)
                      ||+|++|.++.
T Consensus        94 Iy~t~~t~~ll  104 (555)
T 3zq4_A           94 VYGGKLAIGLL  104 (555)
T ss_dssp             EEECHHHHHHH
T ss_pred             EEECHHHHHHH
Confidence            99999998753

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10

Probab=99.55  E-value=6.2e-15  Score=107.92  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=56.8

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCC------------------CCCCC--------------CCCCCCccEEEecCCC
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQ------------------PPLSQ--------------LVDFSEVNMILISNYL   49 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~------------------~p~~~--------------~~~~~~iDavliSh~H   49 (78)
                      ++++|+||++++.++ .+|||||+...                  .|.+.              ..++.+||+|+|||+|
T Consensus        15 ~~~~g~n~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~i~~v~lTH~H   94 (429)
T 2az4_A           15 ILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAH   94 (429)
T ss_dssp             TTSSSCCEEEEEETTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCSEEEEECSCSC
T ss_pred             CCccCCeEEEEEECCeEEEEecCCCCCcccCCCcchhhhccCCcccCCchhhhcccccccchhhhhccccCCEEEECCch
Confidence            578999999999988 57899997431                  12221              2578899999999999


Q ss_pred             --CcchhhhhhhccCCcceEEechhhhhc
Q psy9131          50 --SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus        50 --H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                        |+|+||+|.+    +.+||+|+.|.++
T Consensus        95 ~DHiggl~~l~~----~~~iy~~~~~~~~  119 (429)
T 2az4_A           95 LDHSRMINYLDP----AVPLYTLKETKMI  119 (429)
T ss_dssp             HHHHTTGGGBCT----TSCEEEEHHHHHH
T ss_pred             HHHhCcHhHhcC----CCCEEECHHHHHH
Confidence              9999999984    4799999999765

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*

Probab=99.55  E-value=1.2e-15  Score=116.88  Aligned_cols=73  Identities=14%  Similarity=0.174  Sum_probs=58.2

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCCC----------CCCCC--CCCCCccEEEecCCC--CcchhhhhhhccCC----
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQP----------PLSQL--VDFSEVNMILISNYL--SMLALPFITEGTGF----   63 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~~----------p~~~~--~~~~~iDavliSh~H--H~g~LP~l~~~~gf----   63 (78)
                      ++|+|+||++++.++ .+|||||+.+..          |.+..  .++.+||+|+|||+|  |+|+||+|.+. .+    
T Consensus        25 ~~eig~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHiggl~~L~~~-~~~~~~  103 (562)
T 3bk2_A           25 MGEIGKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFLLPM-IFGKES  103 (562)
T ss_dssp             BSBSSCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHHHHHH-HHCSCC
T ss_pred             CCCcCCCEEEEEECCeEEEEECCCCCCccccccccccccchhhhhcCcccCcEEEECCCChHHhCCHHHHHHh-hccccC
Confidence            579999999999988 568999963211          22221  367899999999999  99999999963 23    


Q ss_pred             cceEEechhhhhc
Q psy9131          64 EGVVYATEPTLQI   76 (78)
Q Consensus        64 ~g~Iy~T~~T~~l   76 (78)
                      +.+||+|++|.++
T Consensus       104 ~~pIy~~~~t~~~  116 (562)
T 3bk2_A          104 PVPIYGARLTLGL  116 (562)
T ss_dssp             CSEEEEEHHHHHH
T ss_pred             CceEEeCHHHHHH
Confidence            7999999999875

>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}

Probab=99.24  E-value=5.6e-12  Score=87.38  Aligned_cols=71  Identities=6%  Similarity=0.073  Sum_probs=54.8

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCC--------------CCC------CCCCCCCCccEEEecCCC--Ccchhhhhhhcc
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQ--------------PPL------SQLVDFSEVNMILISNYL--SMLALPFITEGT   61 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~--------------~p~------~~~~~~~~iDavliSh~H--H~g~LP~l~~~~   61 (78)
                      +++-+|++++.++ .+|||+|....              ...      ...+++++||+||+||.|  |+|+++.+.++.
T Consensus        45 ~~~~n~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~Id~IllTH~H~DHigg~~~l~~~~  124 (280)
T 3esh_A           45 NLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHA  124 (280)
T ss_dssp             EEECCCEEEECSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCC
T ss_pred             EEeEEEEEEEECCEEEEEECCCCCcccccccccccCCcccchHHHHHHHcCCCHHHCCEEEeCCCcccccCccccccccc
Confidence            5778999999977 67899996321              011      113577899999999999  999999998633


Q ss_pred             CC-cceEEechhhhh
Q psy9131          62 GF-EGVVYATEPTLQ   75 (78)
Q Consensus        62 gf-~g~Iy~T~~T~~   75 (78)
                      .| +.+||+++.+.+
T Consensus       125 ~fp~a~i~~~~~~~~  139 (280)
T 3esh_A          125 IFENAIHVVQQDEWH  139 (280)
T ss_dssp             SSTTCEEEEEHHHHH
T ss_pred             CCCCCEEEECHHHHH
Confidence            57 599999988765

>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A

Probab=99.22  E-value=1.4e-11  Score=88.77  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             CcccCCeEEEEeCC-e-EEEeCcCCC-----CCCCC---CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEech
Q psy9131           4 ERMHRSTVGRECCG-K-VFVDSAPEF-----QPPLS---QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATE   71 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~-~llDcG~~~-----~~p~~---~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~   71 (78)
                      ..-++||++++.++ + +|||||+..     +...+   ..+++.+||+|||||.|  |+++||.|.+  +.+.+||+++
T Consensus        37 ~~R~~ss~li~~~~~~~iLiD~G~~~~~~l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~--~~~~~vy~~~  114 (321)
T 3jxp_A           37 TARTQSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLRE--GCPHQVWCTD  114 (321)
T ss_dssp             CCBCBCEEEEESSSSSEEEECCCTTHHHHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGG--GCCEEEEECH
T ss_pred             CcccceEEEEEeCCceEEEEeCCchHHHHHHhcccccccccCCcccCCEEEECCCChhhhhhHHHHHh--cCCCeEEECH
Confidence            34588999999987 5 789999731     11111   12578999999999999  9999999964  3578999999


Q ss_pred             hhhhc
Q psy9131          72 PTLQI   76 (78)
Q Consensus        72 ~T~~l   76 (78)
                      .+.+.
T Consensus       115 ~~~~~  119 (321)
T 3jxp_A          115 MVHQD  119 (321)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A

Probab=99.20  E-value=1.1e-11  Score=85.40  Aligned_cols=68  Identities=15%  Similarity=0.079  Sum_probs=52.5

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL   74 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~   74 (78)
                      ..-++||++++.++ .+|||||...   ....+++.+||+|||||.|  |+++++.+....+.+.+||+++.+.
T Consensus        35 ~~r~~s~~li~~~~~~iLiD~G~~~---~~~~~~~~~id~IliTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~  105 (258)
T 3g1p_A           35 YRRQPCSGVVKFNDAITLIDAGLHD---LADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQ  105 (258)
T ss_dssp             GCBCBSEEEEEETTEEEEECCCCTT---HHHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSS
T ss_pred             ccccCceEEEEECCcEEEEECCchH---HHhhcCcccCCEEEEccCchhHhCCHHHHhccCCCCeEEEeChhhh
Confidence            34578999999988 6789999311   0112456799999999999  9999999875444458899998876

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7

Probab=99.20  E-value=3.2e-12  Score=88.93  Aligned_cols=69  Identities=12%  Similarity=0.097  Sum_probs=51.1

Q ss_pred             cCCeEEEEe----CC-eEEEeCcCCC--CCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccC-----CcceEEechh
Q psy9131           7 HRSTVGREC----CG-KVFVDSAPEF--QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTG-----FEGVVYATEP   72 (78)
Q Consensus         7 ~~S~~l~e~----~~-~~llDcG~~~--~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~g-----f~g~Iy~T~~   72 (78)
                      +.||++++.    ++ .+|||||...  .+... .+++.+||+|+|||.|  |+++||.+.+..+     .+-+||+++.
T Consensus        19 ~~~~~li~~~~~~~~~~iliD~G~~~~~~l~~~-~~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~i~~~~~   97 (306)
T 2cbn_A           19 NVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT-AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG   97 (306)
T ss_dssp             CBCEEEEECCCSSCCCEEEECCCTTHHHHHHTS-CCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTT
T ss_pred             CCCEEEEEeecCCCCcEEEEECCHHHHHHHHHh-CCCHHHcCEEEEecCCchhhCChHHHHHHHHhcCCCCCeEEEcCcc
Confidence            569999998    66 6789999631  11111 2467899999999999  9999998875322     2357999988


Q ss_pred             hhhc
Q psy9131          73 TLQI   76 (78)
Q Consensus        73 T~~l   76 (78)
                      +.++
T Consensus        98 ~~~~  101 (306)
T 2cbn_A           98 IREF  101 (306)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}

Probab=99.19  E-value=5.2e-11  Score=80.79  Aligned_cols=65  Identities=9%  Similarity=0.044  Sum_probs=51.0

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      ..+|++++.++ .+|||+|.....+.+ .+ +.+||+|++||+|  |+|+++.+.+.  |+.+||+++.+.+
T Consensus        19 ~~~~~li~~~~~~iLiD~G~~~~~~~l-~~-~~~i~~vi~TH~H~DH~gg~~~l~~~--~~~~i~~~~~~~~   86 (261)
T 3adr_A           19 IATVYVMCGEKLTVMIDAGVSNSIADF-SF-LDKLDYIVLTHLHIDHIGLLPELLQV--YKAKVLVKSGFKK   86 (261)
T ss_dssp             GSEEEEEECSSCEEEECCCCTTCCCCC-TT-CSCCCEEECSCCSGGGTTTHHHHHHH--SCCEEEEETTCTH
T ss_pred             ceEEEEEEcCCcEEEEeCCCCCChhhc-CC-CCCCcEEEECCCCccccCCHHHHHHH--hCCeEEECHHHHH
Confidence            45799998745 678999974333344 34 7899999999999  99999999864  5789999887653

>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A

Probab=99.18  E-value=1.5e-11  Score=83.50  Aligned_cols=67  Identities=9%  Similarity=-0.092  Sum_probs=50.8

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCC---CCC-C-------------------------CCCCCCCccEEEecCCC--Ccc
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQ---PPL-S-------------------------QLVDFSEVNMILISNYL--SML   52 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~---~p~-~-------------------------~~~~~~~iDavliSh~H--H~g   52 (78)
                      ++..+|++++.++ .+|||||....   .|. +                         ..+++++||+|++||+|  |+|
T Consensus        36 ~~~~~~~lI~~~~~~iLiDtG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~~I~~VilTH~H~DH~g  115 (254)
T 3dha_A           36 NLPVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAG  115 (254)
T ss_dssp             EEEEEEEEEEETTEEEEECCCCCGGGBTCTTTTTTSTTTTTEEEEBCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHT
T ss_pred             EEeeEEEEEECCCccEEEECCCChhhhcccccccccccccccccccCchhhHHHHHHHcCCCHHHCCEEEcCCChhhcCC
Confidence            6788999999988 57899996311   111 0                         02567789999999999  999


Q ss_pred             hhhhhhhccCCcceEEechhhhhc
Q psy9131          53 ALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus        53 ~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      +++.+.     +.+||+++.+.+.
T Consensus       116 g~~~~~-----~~~i~~~~~~~~~  134 (254)
T 3dha_A          116 GNGAFT-----NTPIIVQRTEYEA  134 (254)
T ss_dssp             TGGGCS-----SSCEEEEHHHHHH
T ss_pred             ChHHCC-----CCEEEECHHHHHH
Confidence            999765     3799999887653

>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9

Probab=99.16  E-value=7.1e-12  Score=86.07  Aligned_cols=67  Identities=16%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCC--CCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC---------cceEEechh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEF--QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF---------EGVVYATEP   72 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~--~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf---------~g~Iy~T~~   72 (78)
                      +.||++++.++ .+|||||...  ++...  +++.+||+|+|||.|  |++++|.+.+...|         ..+||+++.
T Consensus        42 ~~~~~li~~~~~~iLiD~G~~~~~~l~~~--~~~~~i~~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~~~i~~~~~  119 (268)
T 1zkp_A           42 ATSGYLFEHDGFRLLVDCGSGVLAQLQKY--ITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTF  119 (268)
T ss_dssp             CBSEEEEEETTEEEEECCCTTHHHHHTTT--CCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSS
T ss_pred             CccEEEEEECCcEEEEECCHHHHHHHHHh--CCcccCCEEEEecCCchhhCCHHHHHHHHHhcccccCCCCceEEEeCcc
Confidence            58999999988 6789999631  11222  567899999999999  99999988753112         378999887


Q ss_pred             hhh
Q psy9131          73 TLQ   75 (78)
Q Consensus        73 T~~   75 (78)
                      +.+
T Consensus       120 ~~~  122 (268)
T 1zkp_A          120 DEN  122 (268)
T ss_dssp             SHH
T ss_pred             HHH
Confidence            754

>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*

Probab=99.14  E-value=1.1e-11  Score=87.07  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             cCCeEEEEe---CC-eEEEeCcCCC--CCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC-----cceEEechhh
Q psy9131           7 HRSTVGREC---CG-KVFVDSAPEF--QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF-----EGVVYATEPT   73 (78)
Q Consensus         7 ~~S~~l~e~---~~-~~llDcG~~~--~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-----~g~Iy~T~~T   73 (78)
                      +.||++++.   ++ .+|||||...  .+... .+++.+||+|+|||.|  |++++|.|.+..++     +.+||+++.+
T Consensus        18 ~~~~~li~~~~~~~~~iLiD~G~~~~~~l~~~-~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~v~~~~~~   96 (320)
T 1y44_A           18 NVTSVALKLLEERRSVWLFDCGEATQHQMLHT-TIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGI   96 (320)
T ss_dssp             CBCEEEEEETTTTSEEEEECCCTTHHHHHTTS-SCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTH
T ss_pred             CCCEEEEEEecCCCcEEEEECCHHHHHHHHHc-CCCHHHcCEEEEeCCChhhhCCHHHHHHHHHhcCCCCCEEEEeCHHH
Confidence            579999998   77 6789999631  11111 2467899999999999  99999988753222     3579999887


Q ss_pred             hhc
Q psy9131          74 LQI   76 (78)
Q Consensus        74 ~~l   76 (78)
                      .++
T Consensus        97 ~~~   99 (320)
T 1y44_A           97 KAF   99 (320)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}

Probab=99.13  E-value=3.5e-11  Score=82.41  Aligned_cols=66  Identities=11%  Similarity=0.077  Sum_probs=49.7

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCC----------------------CC----C--CCCCCCCccEEEecCCC--Ccch
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQP----------------------PL----S--QLVDFSEVNMILISNYL--SMLA   53 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~----------------------p~----~--~~~~~~~iDavliSh~H--H~g~   53 (78)
                      ++..+|++++.++ .+|||||.....                      ..    +  ..+++++||+|++||.|  |+|+
T Consensus        40 ~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg  119 (276)
T 2r2d_A           40 DIPVSAYLIQCTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAGC  119 (276)
T ss_dssp             EEEEEEEEEECSSCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTSTT
T ss_pred             EeeeEEEEEECCCCCEEEECCCCcccccccccccHhHHhhcCCCCChhhCHHHHHHHcCCCHHHCCEEEecCcccccCCC
Confidence            3566899999877 678999973221                      00    1  12567799999999999  9999


Q ss_pred             hhhhhhccCCcceEEechhhhh
Q psy9131          54 LPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus        54 LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      ++.+     .+.+||+++.+.+
T Consensus       120 ~~~~-----~~~~v~~~~~~~~  136 (276)
T 2r2d_A          120 VEYF-----GKSRLIAHEDEFA  136 (276)
T ss_dssp             GGGC-----SSSEEEEEHHHHH
T ss_pred             hhhC-----CCCEEEECHHHHH
Confidence            9977     2479999988764

>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A

Probab=99.10  E-value=1.3e-11  Score=85.09  Aligned_cols=70  Identities=10%  Similarity=-0.007  Sum_probs=53.2

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCC----CCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQP----PLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~----p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      ..+.+|++++.++ .+|||+|.....    ..+  ..+++++||+|++||+|  |+|+++.+.+.  ++.+||+++.+.+
T Consensus        52 ~~~~n~~li~~~~~~iLID~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~  129 (294)
T 3m8t_A           52 TDGIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKE--TGAQLVAGERDKP  129 (294)
T ss_dssp             CSSSCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCCHHHHTTHHHHHHH--HCCEEEEEGGGHH
T ss_pred             CCCeEEEEEEECCceEEEECCCchhHHHHHHHHHHcCCCHHHCcEEEECCCCccccccHHHHhhc--cCCEEEEChHHHH
Confidence            4568999999987 578999962111    111  12566789999999999  99999999864  5689999988865


Q ss_pred             c
Q psy9131          76 I   76 (78)
Q Consensus        76 l   76 (78)
                      .
T Consensus       130 ~  130 (294)
T 3m8t_A          130 L  130 (294)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}

Probab=99.09  E-value=1.7e-11  Score=89.52  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=53.0

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCCCC-CCCCCCCCCccEEEecCCC--CcchhhhhhhccCC---------cceEEe
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQPP-LSQLVDFSEVNMILISNYL--SMLALPFITEGTGF---------EGVVYA   69 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~~p-~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf---------~g~Iy~   69 (78)
                      ..+-+.||++++.++ .+|||||...... ....+++.+||+|+|||.|  |+++||.|....++         +-+||+
T Consensus        14 ~~~r~~ss~ll~~~~~~iLiD~G~g~~~~l~~~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~~~~~~~l~iyg   93 (368)
T 3zwf_A           14 SPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYG   93 (368)
T ss_dssp             CSSSCSSEEEEEETTEEEEECCCTTHHHHHHHSSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC------CCEEEEE
T ss_pred             CCCCCccEEEEEECCeEEEEeCChhHHHHHHHcCCChHHCCEEEECCCChHHhCcHHHHHHHhhhccccccCCCCeEEEE
Confidence            345678999999988 6789999521100 0113566899999999999  99999988753322         357999


Q ss_pred             chhhhh
Q psy9131          70 TEPTLQ   75 (78)
Q Consensus        70 T~~T~~   75 (78)
                      .+.+.+
T Consensus        94 p~~~~~   99 (368)
T 3zwf_A           94 PVGLRD   99 (368)
T ss_dssp             ETTHHH
T ss_pred             cHHHHH
Confidence            887764

>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0

Probab=99.06  E-value=3e-11  Score=80.27  Aligned_cols=69  Identities=14%  Similarity=-0.014  Sum_probs=51.2

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCC-----CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQP-----PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~-----p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ....+|++++.++ .+|||||.....     ..+......+||+|++||+|  |+|+++.+.+   ++.+||+++.+.+.
T Consensus        28 ~~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~  104 (219)
T 3l6n_A           28 EYSANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNN---KGIKTYATAKTNEF  104 (219)
T ss_dssp             EEEEEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHH---TTCEEEECHHHHHH
T ss_pred             cccceEEEEEeCCEEEEEeCCCChHHHHHHHHHHHHhcCCceeEEEecCCCcccccCHHHHHh---CCCEEEEcHHHHHH
Confidence            3467999999988 568999963211     11111123789999999999  9999999985   47899999988653

>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B

Probab=99.05  E-value=2.7e-11  Score=83.40  Aligned_cols=69  Identities=19%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCCC----CC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQPP----LS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~p----~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +.+.||++++.++ .+|||+|......    .+  ..+++++||+|++||+|  |+|+++.+.+.  +..+||+++.+.+
T Consensus        55 ~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~l~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~  132 (303)
T 4ax1_B           55 TCGISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKA--TGAPVYARAPAID  132 (303)
T ss_dssp             BSSSCCEEECCTTCEEEECCBSTTCHHHHHHHHHHTTCCGGGEEEEECSCSSHHHHTTHHHHHHH--HCCCEEEEHHHHH
T ss_pred             CCCceEEEEEeCCcEEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEcCCCCccccCCHHHHHhh--cCCEEEEcHHHHH
Confidence            3467899999877 6789999621111    11  12566789999999999  99999999864  5689999988765

>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*

Probab=99.04  E-value=4e-11  Score=84.12  Aligned_cols=68  Identities=18%  Similarity=0.152  Sum_probs=49.3

Q ss_pred             cCCeEEEEe---CC---eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhc---cCCcceEEechhhhh
Q psy9131           7 HRSTVGREC---CG---KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEG---TGFEGVVYATEPTLQ   75 (78)
Q Consensus         7 ~~S~~l~e~---~~---~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~---~gf~g~Iy~T~~T~~   75 (78)
                      ++||++++.   +|   .+|||||+.... .+...+..+||+|||||.|  |+++||.|.+.   .+.+.+||+++.+.+
T Consensus        62 ~~~s~li~~~~~~g~~~~iLID~G~~~~~-~l~~~~~~~id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~  140 (293)
T 3md7_A           62 RRASLLVERYDAEGNNTVVVIDTGPDFRM-QMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRN  140 (293)
T ss_dssp             CBCEEEEEEECTTCCEEEEEECCCTTHHH-HHHHHTCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHH
T ss_pred             cccEEEEEecCCCCceeEEEEECCccHHH-HHHhcCCCcccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHH
Confidence            469999996   43   568999963111 1111345899999999999  99999987641   145689999988765

>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}

Probab=99.02  E-value=1.4e-10  Score=81.57  Aligned_cols=67  Identities=13%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCCC-CCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQP-PLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQ   75 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~~-p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~~   75 (78)
                      .++|++++.++ .+|||+|+.... ...  ..+++++||+|++||.|  |+++++.+.+.  | +.+||+++.+.+
T Consensus        32 ~g~s~li~~~~~~iLiD~G~~~~~~~~l~~~g~~~~~i~~v~lTH~H~DH~ggl~~~~~~--~~~~~v~~~~~~~~  105 (284)
T 2p4z_A           32 HGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLER--NPEVKIYTHKEILN  105 (284)
T ss_dssp             SSCEEEEEETTEEEEECCCSSTHHHHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHH--CTTCEEEEEGGGGS
T ss_pred             CEEEEEEEECCeEEEEeCCCCHHHHHHHHHcCCChhhCCEEEECCCCchhhccHHHHHHH--cCCCceecCHHHHH
Confidence            47899999988 578999973211 111  12577899999999999  99999998863  4 589999988753

>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}

Probab=99.00  E-value=8e-10  Score=75.91  Aligned_cols=66  Identities=15%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      -+|-||++++.++ ++|+|+|....  .+  .+..+||+|||||.|  |++ ++.+.+....+.+||+++.+.+
T Consensus        34 ~lg~s~~li~~~~~~iliDpg~~~~--~~--~~~~~id~VliTH~H~DH~~-~~~l~~~~~~~~~v~~~~~~~~  102 (235)
T 3kl7_A           34 FIKHGSLMLTYDNHSIQVDPVSEYA--DY--TTFPKADIILITHEHGDHLD-PKAIQAVEKSDTEIIANENSQK  102 (235)
T ss_dssp             EEETTEEEEEETTEEEEESCCTTTC--CT--TSSCCCSEEEECCSSTTTCC-HHHHHHHCCTTCEEEECHHHHH
T ss_pred             EEcceEEEEEECCEEEEECCCCCcc--ch--hhCCCCCEEEECCCccccCC-HHHHHHhhcCCCEEEEcHHHHH
Confidence            4688999999988 67899996422  22  245689999999999  995 5655542335689999987754

>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A

Probab=98.99  E-value=1.3e-10  Score=79.82  Aligned_cols=67  Identities=12%  Similarity=0.017  Sum_probs=50.9

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCCC----CCCC--CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQP----PLSQ--LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~~----p~~~--~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +.+|++++.++ .+|||+|.....    ..+.  .+++++||+|++||+|  |+|+++.+.+.  |..+||+++.+.+
T Consensus        37 ~~~~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~  112 (269)
T 1sml_A           37 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRR--TGAKVAANAESAV  112 (269)
T ss_dssp             TBCCEEEEETTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHH--SSCEEEECHHHHH
T ss_pred             CcEEEEEEeCCceEEEECCCCccHHHHHHHHHHcCCChHHCcEEEeCCCCccccCCHHHHHHh--cCCeEEECHHHHH
Confidence            45799999987 578999962110    1111  2466789999999999  99999999864  5689999988764

>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A

Probab=98.98  E-value=8e-11  Score=80.58  Aligned_cols=68  Identities=12%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCCC----CCCC--CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQP----PLSQ--LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~~----p~~~--~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      .+.+|++++.++ .+|||+|.....    ..+.  .+++++||+||+||.|  |+|+++.+.+.  +..+||+++.+.+
T Consensus        23 ~~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~   99 (263)
T 1k07_A           23 DDLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQ--TKAKYMVMDEDVS   99 (263)
T ss_dssp             SSBCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHH--HCCEEEEEHHHHH
T ss_pred             CCeEEEEEEeCCceEEEECCCcccHHHHHHHHHHcCCCHHHCcEEEeCCCCccccccHHHHHHh--cCCEEEEcHHHHH
Confidence            357899999987 578999962110    0111  2456789999999999  99999999864  5689999988765

>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A

Probab=98.98  E-value=6.8e-11  Score=78.58  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=51.7

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCC----CC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEF----QP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~----~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      .+.+|++++.++ .+|||+|...    .. ..+..+++.+|++|++||+|  |+|+++.+.+   +..+||+++.+.+.
T Consensus        21 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~   96 (227)
T 3iog_A           21 VQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKS---IGAKVVSTRQTRDL   96 (227)
T ss_dssp             SCEEEEEEECSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHH
T ss_pred             ccCcEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCeEEEEeCCCchhhcChHHHHhh---CCCeEEECHHHHHH
Confidence            466899999877 6789999621    00 11222567899999999999  9999999774   56899999988753

>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A

Probab=98.94  E-value=1.6e-10  Score=79.13  Aligned_cols=66  Identities=6%  Similarity=0.128  Sum_probs=49.4

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCC-------------------CCC--CCCCCCCccEEEecCCC--Ccchhhhhhhc
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQP-------------------PLS--QLVDFSEVNMILISNYL--SMLALPFITEG   60 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~-------------------p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~   60 (78)
                      +++.+|++++.++ .+|||+|.....                   ..+  ..+++++||+|++||+|  |+|+++.+.  
T Consensus        32 ~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~VilTH~H~DH~gg~~~~~--  109 (274)
T 3aj3_A           32 RFPVYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYFP--  109 (274)
T ss_dssp             EEEEEEEEEEETTEEEEECCCCCHHHHHHHCGGGCCBCCGGGSHHHHHHHTTCCGGGCCEEECSCCSGGGTTTGGGCT--
T ss_pred             EeeEEEEEEEeCCccEEEECCCCcccccCccccCCcccCccccHHHHHHHcCCCHHHCCEEEecCcCcccCCchhhCC--
Confidence            4667999999987 578999963210                   001  12567889999999999  999998772  


Q ss_pred             cCCcceEEechhhhh
Q psy9131          61 TGFEGVVYATEPTLQ   75 (78)
Q Consensus        61 ~gf~g~Iy~T~~T~~   75 (78)
                         +.+||+++.+.+
T Consensus       110 ---~a~v~~~~~~~~  121 (274)
T 3aj3_A          110 ---HAKKICHRSEVP  121 (274)
T ss_dssp             ---TSEEEEETTHHH
T ss_pred             ---CCEEEECHHHHH
Confidence               379999887654

>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A

Probab=98.93  E-value=1.1e-10  Score=77.49  Aligned_cols=70  Identities=19%  Similarity=0.134  Sum_probs=50.6

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCCCC-C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPEFQ-P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~~~-~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      +..+.+|++++.++ .+|||+|...+ . ..+.... .+||+|++||+|  |+|+++.+.+.  |+.+||+++.+.+.
T Consensus         9 g~~~~n~~li~~~~~~iliD~G~~~~~l~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~   83 (207)
T 2zwr_A            9 GPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTG-LIPLAILLTHAHFDHVGAVAPLVEA--LDLPVYLHPLDLPL   83 (207)
T ss_dssp             TTTTEEEEEEEETTEEEEECCCSCHHHHHHHHHHHT-CCCSCEECSCCCGGGTTTHHHHHHH--HCCCEEECGGGHHH
T ss_pred             CCcccEEEEEEeCCcEEEEeCCCCHHHHHHHHHHcC-CcccEEEECCCChHHHccHHHHHHH--hCCcEEECHHHHHH
Confidence            34567899999987 57899995211 0 0111111 248999999999  99999999864  56899999887653

>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}

Probab=98.91  E-value=1.5e-09  Score=75.03  Aligned_cols=70  Identities=7%  Similarity=0.027  Sum_probs=50.3

Q ss_pred             CCcccCCeEEEEeCC-eEEEeCcCCCC---------------CCCC-CCCCC----CCccEEEecCCC--Ccchhhhhhh
Q psy9131           3 TERMHRSTVGRECCG-KVFVDSAPEFQ---------------PPLS-QLVDF----SEVNMILISNYL--SMLALPFITE   59 (78)
Q Consensus         3 ~~~V~~S~~l~e~~~-~~llDcG~~~~---------------~p~~-~~~~~----~~iDavliSh~H--H~g~LP~l~~   59 (78)
                      -.-+|.||++++.++ ++|+|++....               .|.. ..+++    ++||+|||||.|  |+++++.+..
T Consensus         7 it~lGha~~li~~~g~~iLiDp~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~iliTH~H~DH~~~~~~~~~   86 (264)
T 3rpc_A            7 YTHIRNATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVVVTHTHLDHWDDTAINSI   86 (264)
T ss_dssp             EEEEETTEEEEEETTEEEEESCCCCCTTCBCCCTTBTTTTSCBSSSCCSSCHHHHHTTCCEEECSCCCGGGSCHHHHHHS
T ss_pred             EEEEeCcEEEEEECCEEEEeCcccCCCcCccCCCCcccccccCCCCCCCCCHHHccccCCEEEECCCchhhCCCHHHHhh
Confidence            345789999999999 67899974211               1111 11333    379999999999  9999998875


Q ss_pred             ccCCcceEEec-hhhh
Q psy9131          60 GTGFEGVVYAT-EPTL   74 (78)
Q Consensus        60 ~~gf~g~Iy~T-~~T~   74 (78)
                      +  .+.+||++ +.+.
T Consensus        87 ~--~~~~v~~~~~~~~  100 (264)
T 3rpc_A           87 P--KSLPIFVQNTADK  100 (264)
T ss_dssp             C--TTSCEEESSHHHH
T ss_pred             c--cCCeEEEeCHHHH
Confidence            3  46899999 5554

>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*

Probab=98.90  E-value=1.2e-09  Score=82.31  Aligned_cols=66  Identities=14%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCCCC---------------------------CCCCCCCCCccEEEecCCC--Ccchhhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQPP---------------------------LSQLVDFSEVNMILISNYL--SMLALPF   56 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~~p---------------------------~~~~~~~~~iDavliSh~H--H~g~LP~   56 (78)
                      .++|++++.++ .+|||+|.....|                           .+....+.+||+|||||+|  |+|++|.
T Consensus        17 qg~~~lI~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~id~vilTH~H~DHiggl~~   96 (547)
T 2bib_A           17 GSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDE   96 (547)
T ss_dssp             BCCEEEEEETTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCBSCEECCCSCHHHHTTHHH
T ss_pred             CceEEEEEeCCeEEEEeCCCCCcccccccccccccccccccccchhHHHHHHHHHhcCcccccEEEEcCCCccccCCHHH
Confidence            46899999988 5689999742211                           1112345789999999999  9999999


Q ss_pred             hhhccCCc-ceEEechhhh
Q psy9131          57 ITEGTGFE-GVVYATEPTL   74 (78)
Q Consensus        57 l~~~~gf~-g~Iy~T~~T~   74 (78)
                      |.+.  |+ .+||+++.+.
T Consensus        97 l~~~--~~~~~i~~~~~~~  113 (547)
T 2bib_A           97 LLST--YPVDRVYLKKYSD  113 (547)
T ss_dssp             HHHH--SCBSEEECCCCCG
T ss_pred             HHHh--CCccEEEECcccc
Confidence            9864  55 4699877654

>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A

Probab=98.89  E-value=1.3e-10  Score=77.50  Aligned_cols=68  Identities=10%  Similarity=0.053  Sum_probs=50.8

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      .+.+|++++.++ .+|||+|....    . ..+..+.+.+|++|++||.|  |+|+++.+.+   ...+||+++.+.++
T Consensus        24 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~   99 (233)
T 3q6v_A           24 VQENSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKT---LGAKIVATQMTYDL   99 (233)
T ss_dssp             SCEEEEEEECSSCEEEESCCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHH
T ss_pred             CCCcEEEEEeCCeEEEEECCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhhhChHHHHhh---CCCEEEEcHHHHHH
Confidence            456789999866 57899996211    0 11112357889999999999  9999999884   45899999988654

>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3

Probab=98.88  E-value=3.2e-10  Score=81.35  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=50.1

Q ss_pred             cCCeEEEEeCCeEEEeCcCCC--C--CCCCC-CCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhhhc
Q psy9131           7 HRSTVGRECCGKVFVDSAPEF--Q--PPLSQ-LVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQI   76 (78)
Q Consensus         7 ~~S~~l~e~~~~~llDcG~~~--~--~p~~~-~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~~l   76 (78)
                      +.+|++++.++.+|||+|...  +  .+.+. .+++.+||+|++||.|  |+|+++.+.+.  | ..+||+++.+.+.
T Consensus        34 ~~n~~li~~~~~iliD~G~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~--~~~~~v~~~~~~~~~  109 (402)
T 1e5d_A           34 TYNAYLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEA--CQPEKIFTSSLGQKA  109 (402)
T ss_dssp             EEEEEEECSSSCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHH--HCCSEEEEEHHHHHH
T ss_pred             ceEEEEEECCCEEEEeCCCCccHHHHHHHHHHhCCcccCCEEEeCCCCccccccHHHHHHH--CCCCEEEEChHHHHH
Confidence            456999994336789999631  0  01111 1467899999999999  99999999864  4 4899999988653

>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5

Probab=98.87  E-value=1.4e-09  Score=77.70  Aligned_cols=69  Identities=16%  Similarity=0.027  Sum_probs=50.0

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCC----CCC----C--CCCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEech
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQ----PPL----S--QLVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATE   71 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~----~p~----~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~   71 (78)
                      ...+|++++.++ .+|||+|....    ...    +  ..+++++||+|++||.|  |+|+++.+.+ .-| +.+||+++
T Consensus        95 ~~~n~~LI~~~~~~iLIDtG~~~~~~~~~~~l~~~L~~~Gi~~~~Id~VilTH~H~DHiggl~~~~~-~~fp~a~v~~~~  173 (331)
T 1p9e_A           95 TSVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQ-LAFPNAVVRADQ  173 (331)
T ss_dssp             EEEEEEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTE-ESSTTCEEECBH
T ss_pred             EEEEEEEEEECCEEEEEECCCCCcCCcchhHHHHHHHHcCCCHHHCCEEEeCCcccccCCccccccc-ccCCCCEEEECH
Confidence            345699999977 67899996321    111    1  12567899999999999  9999985432 236 48999998


Q ss_pred             hhhh
Q psy9131          72 PTLQ   75 (78)
Q Consensus        72 ~T~~   75 (78)
                      .+.+
T Consensus       174 ~~~~  177 (331)
T 1p9e_A          174 KEAD  177 (331)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11

Probab=98.87  E-value=3.7e-10  Score=76.07  Aligned_cols=62  Identities=10%  Similarity=0.096  Sum_probs=46.6

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCC---C-CCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechh
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQ---P-PLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEP   72 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~---~-p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~   72 (78)
                      -..+|++++.++ .+|||+|....   . ..+  ..+++++||+|++||+|  |+|+++.+.     +.+||+++.
T Consensus        33 ~~~n~~li~~~~~~iLID~G~~~~~~~l~~~l~~~g~~~~~i~~ViiTH~H~DH~gg~~~~~-----~~~v~~~~~  103 (221)
T 1ztc_A           33 HFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE-----NATFYVHEV  103 (221)
T ss_dssp             CBCCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCT-----TCEEEEEGG
T ss_pred             CceEEEEEEeCCeEEEEECCCCcchHHHHHHHHHcCCCHHHCcEEEEcCCccccCCchhhCC-----CCEEEEeHH
Confidence            467999999987 57899996210   0 111  12567899999999999  999998765     368999876

>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*

Probab=98.85  E-value=5.2e-10  Score=80.18  Aligned_cols=69  Identities=14%  Similarity=0.039  Sum_probs=51.4

Q ss_pred             ccCCeEEEEeCCeEEEeCcCCCCC----CCCCC-CCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhhhc
Q psy9131           6 MHRSTVGRECCGKVFVDSAPEFQP----PLSQL-VDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~~~llDcG~~~~~----p~~~~-~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~~l   76 (78)
                      ...+|++++.++.+|||+|.....    ..+.. +++.+||+|++||.|  |+|+++.+.++  | ..+||+++.+.+.
T Consensus        34 ~~~n~~li~~~~~iliD~g~~~~~~~~~~~l~~~~~~~~i~~iiiTH~H~DH~gg~~~l~~~--~~~~~v~~~~~~~~~  110 (398)
T 1ycg_A           34 TTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMEL--CPDAHVLCTQRAFDS  110 (398)
T ss_dssp             EEECCEEECSSSCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHH--CTTCEEEECHHHHHH
T ss_pred             eeEEEEEEECCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhhhHHHHHHH--CCCCEEEEcHHHHHH
Confidence            346899999655788999963100    11111 467899999999999  99999999864  5 4899999988653

>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A

Probab=98.84  E-value=2.3e-10  Score=77.46  Aligned_cols=69  Identities=14%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCC----CC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEF----QP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~----~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ..+.+|++++.++ .+|||+|...    .. ..+......+||+|++||.|  |+|+++.+.+.   +.+||+++.+.++
T Consensus        45 ~~~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~  121 (243)
T 4hl2_A           45 AVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA---GIATYANALSNQL  121 (243)
T ss_dssp             EEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHHT---TCEEEEEHHHHHH
T ss_pred             cccceEEEEEECCcEEEEECCCCCccHHHHHHHHHHhhCCCeeEEEECCCCccccCCHHHHHhC---CCeEEECHHHHHH
Confidence            4567999999988 6789999520    00 01111112369999999999  99999999863   6899999987754

>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}

Probab=98.84  E-value=7.1e-09  Score=75.59  Aligned_cols=70  Identities=10%  Similarity=0.107  Sum_probs=48.1

Q ss_pred             ccCCeEEEEeC-C-eEEEe--CcCCC---------------------C-CCC----CCCCC---CCCccEEEecCCC--C
Q psy9131           6 MHRSTVGRECC-G-KVFVD--SAPEF---------------------Q-PPL----SQLVD---FSEVNMILISNYL--S   50 (78)
Q Consensus         6 V~~S~~l~e~~-~-~~llD--cG~~~---------------------~-~p~----~~~~~---~~~iDavliSh~H--H   50 (78)
                      +|-||++++.+ | ++|+|  ||.-.                     . .|.    ...++   ..+||+|||||.|  |
T Consensus        67 lG~s~~lI~~~~g~~iLiDP~~G~g~~~~~~~~~~~~~q~~~~~G~~~l~p~~~~~p~~l~~~~~~~iD~IliTH~H~DH  146 (379)
T 3bv6_A           67 LGCTGIWLKSAGNTNLSIDFWCGTGKKTQKNRLMNTQHQMMRMGGVEALQPNLRTSIFPLDPFAIKEIDAVLASHDHADH  146 (379)
T ss_dssp             EETTEEEEEETTCCEEEESCCCCCCCCCSSCCBCCTTCHHHHHHCCCBCCCCCBCSCCCSCGGGCCCCSEEECSBCSGGG
T ss_pred             ecccEEEEEeCCCCEEEEccCCCCCccccccccccccchhheecCccccCccccCCCCccChHHCCCCCEEEECCCCccc
Confidence            57899999995 7 67899  87411                     0 011    01133   5789999999999  9


Q ss_pred             cc--hhhhhhhccCCcceEEechhhhh
Q psy9131          51 ML--ALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus        51 ~g--~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +|  ++..+.++..-..+||+++.+.+
T Consensus       147 ig~~~l~~l~~~~~~~~~v~~~~~~~~  173 (379)
T 3bv6_A          147 IDVNVAAAVLQNCGEHVKFIGPQACVD  173 (379)
T ss_dssp             CCHHHHHHHHHHSCTTCEEEECHHHHH
T ss_pred             CChHHHHHHHhcCCCCcEEEecHHHHH
Confidence            98  56666643111589999887654

>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*

Probab=98.83  E-value=7.8e-10  Score=79.39  Aligned_cols=67  Identities=13%  Similarity=0.053  Sum_probs=50.6

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCCCC----CCCC-C---CCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQPP----LSQL-V---DFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTL   74 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~~p----~~~~-~---~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~   74 (78)
                      ..+|++++.++ .+|||+|.....+    .+.. +   ++.+||+|++||.|  |+|+++.+.+.  | ..+||+++.+.
T Consensus        34 ~~n~~li~~~~~~iLiD~g~~~~~~~~~~~l~~~~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~--~p~~~v~~~~~~~  111 (404)
T 2ohh_A           34 TYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRR--FPEAPIYCTEVAV  111 (404)
T ss_dssp             EECCEEEECSSCEEEECCCCTTCHHHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHH--STTCCEEECHHHH
T ss_pred             eEEEEEEEeCCcEEEEeCCCCccHHHHHHHHHHHhccCCccCCCEEEeCCCCCcccchHHHHHHH--CCCCEEEECHHHH
Confidence            34799999877 6789999631111    1111 2   67899999999999  99999999864  5 48999998876


Q ss_pred             h
Q psy9131          75 Q   75 (78)
Q Consensus        75 ~   75 (78)
                      +
T Consensus       112 ~  112 (404)
T 2ohh_A          112 K  112 (404)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4

Probab=98.82  E-value=2.6e-09  Score=72.94  Aligned_cols=54  Identities=11%  Similarity=0.040  Sum_probs=39.0

Q ss_pred             CCCCcccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhh
Q psy9131           1 MDTERMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFIT   58 (78)
Q Consensus         1 ~~~~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~   58 (78)
                      |.....+.||++++.++ ++|+|||...  ..+. .++.+||+|||||.|  |++ +|.+.
T Consensus        13 ~~~~~~~~~~~li~~~~~~iLiD~g~~~--~~~~-~~~~~id~VliTH~H~DH~~-~~~l~   69 (220)
T 1vjn_A           13 MKITWFGHACFALEMEGKTIVTDPFDES--VGYP-IPNVTADVVTESHQHFDHNA-HHLVK   69 (220)
T ss_dssp             EEEEEEETTEEEEEETTEEEEESCCC-------C-CCCCBCSEEECSSCC---CG-GGGCB
T ss_pred             eeeEEccCCEEEEEECCEEEEEcCCCCc--CCCC-cCCCCcCEEEECCCCCCCCC-chHhc
Confidence            44566789999999998 6789999521  1121 246899999999999  998 88654

>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*

Probab=98.82  E-value=8.2e-10  Score=77.03  Aligned_cols=68  Identities=21%  Similarity=0.108  Sum_probs=50.2

Q ss_pred             ccCCeEEEE-eCC-eEEEeCcCCCCC----CCCCC-C-CCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhh
Q psy9131           6 MHRSTVGRE-CCG-KVFVDSAPEFQP----PLSQL-V-DFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTL   74 (78)
Q Consensus         6 V~~S~~l~e-~~~-~~llDcG~~~~~----p~~~~-~-~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~   74 (78)
                      ...+|++++ .++ .+|||+|.....    ..+.. + ++.+|++|++||+|  |+|+++.+.+.  | ..+||+++.+.
T Consensus        22 ~~~n~~li~~~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~--~~~a~v~~~~~~~   99 (303)
T 2vw8_A           22 VQVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPR--LPNVQVLASERTC   99 (303)
T ss_dssp             TTSCEEEEEEETTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGG--CTTCEEEEEHHHH
T ss_pred             CCceEEEEEeCCCceEEEECCCCCcHHHHHHHHHHHhcCcccceEEEeccCCccccCCHHHHHHh--CCCCeEEECHHHH
Confidence            357899994 666 568999973100    01111 2 66899999999999  99999999864  5 58999999876


Q ss_pred             h
Q psy9131          75 Q   75 (78)
Q Consensus        75 ~   75 (78)
                      +
T Consensus       100 ~  100 (303)
T 2vw8_A          100 Q  100 (303)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}

Probab=98.82  E-value=1.5e-10  Score=76.58  Aligned_cols=69  Identities=12%  Similarity=0.028  Sum_probs=48.5

Q ss_pred             CcccCCeEEEEe--CC-eEEEeCcCCCC-C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           4 ERMHRSTVGREC--CG-KVFVDSAPEFQ-P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         4 ~~V~~S~~l~e~--~~-~~llDcG~~~~-~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      ...+.+|++++.  ++ .+|||+|...+ . ..+... ..+||+|++||+|  |+|+++.+.+.  |+.+||+++.+.+
T Consensus         9 ~~~~~n~~li~~~~~~~~iLiD~G~~~~~l~~~l~~~-g~~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~   84 (210)
T 2xf4_A            9 TAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDAS-GVTLMQILLTHGHLDHVGAASELAQH--YGVPVIGPEKEDE   84 (210)
T ss_dssp             TTTTEEEEEEECTTTCEEEEECCCSCHHHHHHHHHHH-TCEEEEEECSCSCHHHHTTHHHHHHH--HTCCEECCCGGGH
T ss_pred             CCcccEEEEEEecCCCcEEEEcCCCCHHHHHHHHHHc-CCceeEEEECCCChhhhcCHHHHHHH--cCCcEEEecchHH
Confidence            345789999985  45 56899995211 0 011111 1258999999999  99999999864  4689999887754

>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*

Probab=98.81  E-value=9.5e-09  Score=74.14  Aligned_cols=69  Identities=12%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             cccCCeEEEEeC-C-eEEEe--CcCCCC----------------------CCC----CCCCC---CCCccEEEecCCC--
Q psy9131           5 RMHRSTVGRECC-G-KVFVD--SAPEFQ----------------------PPL----SQLVD---FSEVNMILISNYL--   49 (78)
Q Consensus         5 ~V~~S~~l~e~~-~-~~llD--cG~~~~----------------------~p~----~~~~~---~~~iDavliSh~H--   49 (78)
                      -+|-||++++.+ | ++|+|  ||....                      .|.    ...++   ..+||+|||||.|  
T Consensus        42 ~lG~s~~lI~~~~g~~iLiDP~~G~g~~~~~~~~~~~~~ql~~~~G~~~l~~~~~~~p~~l~~~~l~~id~VliTH~H~D  121 (360)
T 2wyl_A           42 WLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHND  121 (360)
T ss_dssp             EEETTEEEEECTTCCEEEESCCCCCCCCCCCC----------------CCCCCCBCSCCCCCGGGCCCCSEEECSBSCTT
T ss_pred             EecccEEEEEeCCCCEEEEeecCCCCcccccccccccchhhhhhcCccccCCCcccCCCccCHHHcCCCCEEEECCCchh
Confidence            357899999995 7 67899  985210                      011    01133   4789999999999  


Q ss_pred             Ccc--hhhhhhhccCC--cceEEechhhhh
Q psy9131          50 SML--ALPFITEGTGF--EGVVYATEPTLQ   75 (78)
Q Consensus        50 H~g--~LP~l~~~~gf--~g~Iy~T~~T~~   75 (78)
                      |+|  ++..+.++  +  ..+||+++.+.+
T Consensus       122 Hig~~~l~~l~~~--~~~~~~v~~p~~~~~  149 (360)
T 2wyl_A          122 HIDVNVAAAVMQN--CADDVPFIGPKTCVD  149 (360)
T ss_dssp             TCCHHHHHHHHHH--SCTTCCEEECHHHHH
T ss_pred             cCCHHHHHHHHhc--CCCCCEEEEcHHHHH
Confidence            997  46666643  4  578999877654

>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...

Probab=98.81  E-value=3.4e-10  Score=75.94  Aligned_cols=68  Identities=13%  Similarity=0.036  Sum_probs=50.4

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      .+.+|++++.++ .+|||+|....    . ..+....+.+||+|++||+|  |+|+++.+.+.   ..+||+++.+.++
T Consensus        39 ~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~  114 (227)
T 1mqo_A           39 VPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKER---GIKAHSTALTAEL  114 (227)
T ss_dssp             EEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHH---TCEEECBHHHHHH
T ss_pred             ecceEEEEEeCCeEEEEECCCChHHHHHHHHHHHHhcCCCceEEEeCCCCchhccchHHHhhC---CcEEEeccchHHH
Confidence            457899999877 56899996321    0 11111125789999999999  99999999863   4789999887653

>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1

Probab=98.79  E-value=7.6e-10  Score=74.06  Aligned_cols=68  Identities=15%  Similarity=-0.015  Sum_probs=49.6

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCCC-----CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQP-----PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~~-----p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      .+.+|++++.++ .+|||+|.....     ..+...-..+||+|++||.|  |+|+++.+.+   ...+||+++.+.+.
T Consensus        25 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~g~~i~~vi~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~  100 (223)
T 1m2x_A           25 YAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGK---IGAKTYSTKMTDSI  100 (223)
T ss_dssp             EEEEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHH---TTCEEEEEHHHHHH
T ss_pred             ccccEEEEEeCCEEEEEeCCCChhHHHHHHHHHHHHhCCCeEEEEeccCCccccCchhhHhh---CCCeEEEcHHHHHH
Confidence            457899999877 568999962110     11111102589999999999  9999999886   45899999887653

>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}

Probab=98.77  E-value=2.6e-09  Score=74.45  Aligned_cols=67  Identities=16%  Similarity=0.062  Sum_probs=50.4

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCC-----C-CCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQ-----P-PLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~-----~-p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      ..+|++++.++ .+|||+|....     . ..+  ..+++++|++|++||+|  |+|+++.+.+.   ..+||+++.+.+
T Consensus        21 ~~n~~li~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~i~~Vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~   97 (317)
T 2zo4_A           21 TVNLYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGL---GARVFLHEEEFA   97 (317)
T ss_dssp             EEEEEEEEETTEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHHHT---TCEEEEEGGGTT
T ss_pred             cEEEEEEEcCCceEEEECCCCCHHHHHHHHHHHHHcCCChhhcCEEEEcCCCCcccccHHHHHhC---CCEEEEcHHHHH
Confidence            45789999876 57899996321     0 011  12556789999999999  99999999863   589999988765


Q ss_pred             c
Q psy9131          76 I   76 (78)
Q Consensus        76 l   76 (78)
                      .
T Consensus        98 ~   98 (317)
T 2zo4_A           98 R   98 (317)
T ss_dssp             T
T ss_pred             H
Confidence            3

>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}

Probab=98.77  E-value=1.7e-09  Score=79.41  Aligned_cols=55  Identities=16%  Similarity=0.128  Sum_probs=43.0

Q ss_pred             CeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           9 STVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         9 S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      +++++...| .++||+.-.        -+.++||+|||||+|  |+|+||.     +|+++||+|+.|.++
T Consensus        28 ~p~~~~~pG~~ilVD~f~~--------~~~~~IdaI~lTH~H~DHiggl~~-----~~~~pIy~s~~t~~l   85 (367)
T 4b87_A           28 CPFYKKIPGTGFTVDAFQY--------GVVEGCTAYFLTHFHSDHYAGLSK-----HFTFPVYCSEITGNL   85 (367)
T ss_dssp             CCGGGBCTTSSEEESCCSS--------SSCTTCCEEECCCCCHHHHTTCST-----TCCSCEEECHHHHHH
T ss_pred             CceEEEECCCeEEEeCCCc--------CCccCCcEEEECcChHHHhCCccc-----ccCCcEEECHHHHHH
Confidence            344555667 678997411        256899999999999  9999992     478999999999875

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}

Probab=98.77  E-value=1.5e-09  Score=78.53  Aligned_cols=67  Identities=7%  Similarity=-0.022  Sum_probs=49.9

Q ss_pred             cCCeEEEEeCCeEEEeCcCCCCC----CCCC-CCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhhh
Q psy9131           7 HRSTVGRECCGKVFVDSAPEFQP----PLSQ-LVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTLQ   75 (78)
Q Consensus         7 ~~S~~l~e~~~~~llDcG~~~~~----p~~~-~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~~   75 (78)
                      ..+|++++.++.+|||+|.....    ..+. .+++.+||+|++||.|  |+|+++.+.++  | ..+||+++.+.+
T Consensus        40 ~~n~~li~~~~~iLID~G~~~~~~~~~~~l~~~~~~~~i~~ii~TH~H~DH~gg~~~l~~~--~~~~~v~~~~~~~~  114 (414)
T 2q9u_A           40 SYNSYFIDDECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHK--FTNATFVCTKKCQE  114 (414)
T ss_dssp             EECCEEECSSSCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGG--STTCEEEECHHHHH
T ss_pred             ceeEEEEECCCEEEEeCCCcccHHHHHHHHHHhcCcccCCEEEeCCCCcchhcCHHHHHHH--CCCCEEEECHHHHH
Confidence            45789998644789999962110    0111 1467899999999999  99999999864  5 589999998765

>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*

Probab=98.74  E-value=5.4e-10  Score=75.33  Aligned_cols=68  Identities=9%  Similarity=0.035  Sum_probs=49.7

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ++.+|++++.++ .+|||+|....    . ..+......+||+|++||+|  |+|+++.+.+   ++.+||+++.+.++
T Consensus        35 ~~~n~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~  110 (232)
T 1a7t_A           35 VPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQR---KGVQSYANQMTIDL  110 (232)
T ss_dssp             EEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHH
T ss_pred             ccceEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCCccccCCHHHHHh---CCCeEEEcHHHHHH
Confidence            346899999987 57899996210    0 11111114689999999999  9999999886   36899999887653

>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A

Probab=98.74  E-value=1e-09  Score=74.84  Aligned_cols=62  Identities=8%  Similarity=0.029  Sum_probs=42.7

Q ss_pred             CeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhc-c-CC-----cceEEechhhh
Q psy9131           9 STVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEG-T-GF-----EGVVYATEPTL   74 (78)
Q Consensus         9 S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~-~-gf-----~g~Iy~T~~T~   74 (78)
                      ||+++  ++ .+|||||.... ..+ ..++.+||+|+|||+|  |++++|.|... . -|     +.+||+++.+.
T Consensus        13 ~~~~i--~~~~iLiD~G~~~~-~~l-~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~   84 (280)
T 2e7y_A           13 TWIYY--SPERILFDAGEGVS-TTL-GSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR   84 (280)
T ss_dssp             EEEEE--GGGTEEEEECTTHH-HHH-GGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH
T ss_pred             EEEEE--CCcEEEEECCcchH-HHh-ccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH
Confidence            45555  45 78999996311 011 1356789999999999  99999998621 1 12     37899988765

>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A

Probab=98.72  E-value=1.5e-09  Score=73.15  Aligned_cols=68  Identities=10%  Similarity=0.006  Sum_probs=49.9

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCC----CC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEF----QP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~----~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ..+.+|++++.++ .+|||+|...    .. ..+... ..+||+|++||+|  |+|+++.+.+   +..+||+++.+.++
T Consensus        30 ~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~l~~~-g~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~  105 (228)
T 1jjt_A           30 VVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVER-GYKIKGSISSHFHSDSTGGIEWLNS---RSIPTYASELTNEL  105 (228)
T ss_dssp             EEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHTT-TCEEEEEECSSSSHHHHTTHHHHHH---TTCCEEEEHHHHHH
T ss_pred             cccceEEEEEECCcEEEEeCCCChhhHHHHHHHHHHc-CCCeeEEEeCCCChhhhccHHHHHh---CCCEEEEChHHHHH
Confidence            3567899999977 5789999621    00 111112 1389999999999  9999999885   36899999887653

>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*

Probab=98.66  E-value=7.2e-09  Score=77.17  Aligned_cols=71  Identities=15%  Similarity=0.160  Sum_probs=53.4

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCCCC----CC-CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQPP----LS-QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~~p----~~-~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ++-+|||++.++ .+|||.|.....+    .+ ..+++++||.|++||.|  |+|++|.+.++.+=+.+||+++.+.++
T Consensus        50 tsyNsYLI~~~~~~vLIDtg~~~~~~~~l~~l~~~i~~~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~  128 (410)
T 4dik_A           50 ISYNAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRL  128 (410)
T ss_dssp             EEEEEEEEECSSCEEEECCCCGGGHHHHHHHHTTTSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHH
T ss_pred             eEEEEEEEEECCeEEEEeCCCcchHHHHHHHHHHhcCcccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHH
Confidence            455799998877 5689999521101    11 23688999999999999  999999999765445899999987654

>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12

Probab=98.56  E-value=1.1e-08  Score=67.91  Aligned_cols=69  Identities=7%  Similarity=-0.028  Sum_probs=51.0

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCCCC-C-CCCCCCCCCCccEEEecCCCCcchhhhhhhccCCcceEEechhhhhc
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPEFQ-P-PLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~~~-~-p~~~~~~~~~iDavliSh~HH~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ...+.+|++++.++ .+|||+|.... . ..+...  .+||+|++||..|+|+++.+.+.  |..+||+++.+.+.
T Consensus        20 ~~~~~n~~li~~~~~~iliD~g~~~~~~~~~l~~~--g~i~~ii~TH~DH~gg~~~~~~~--~~a~v~~~~~~~~~   91 (201)
T 2p97_A           20 RNIDFNGFAWIRPEGNILIDPVALSNHDWKHLESL--GGVVWIVLTNSDHVRSAKEIADQ--TYTKIAGPVAEKEN   91 (201)
T ss_dssp             TTEEEEEEEECCTTCCEEESCCCCCHHHHHHHHHT--TCCSEEECSSGGGCTTHHHHHHH--SCCEEEEEGGGTTS
T ss_pred             CCcceeEEEEEeCCeeEEEECCCCcHHHHHHHHhc--CCCCEEEECCchhhhhHHHHHHh--cCCEEEEcHhHhhh
Confidence            45678899999866 67899994211 0 111112  28999999999999999999864  56899999887653

>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}

Probab=98.53  E-value=1.5e-08  Score=70.17  Aligned_cols=66  Identities=6%  Similarity=-0.045  Sum_probs=45.8

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCC------CC-CCCCCCCCCccEEEecCCC--CcchhhhhhhccC--CcceEEechhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQ------PP-LSQLVDFSEVNMILISNYL--SMLALPFITEGTG--FEGVVYATEPT   73 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~------~p-~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~g--f~g~Iy~T~~T   73 (78)
                      +.+|++++.++ .+|||+|....      .. .+.. ...+||+||+||.|  |+|+++.+.+..+  -..+||+.+.+
T Consensus        31 ~~n~~li~~~~~~ilID~G~~~~~~~~~~l~~~l~~-~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~  108 (289)
T 4ad9_A           31 GTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTE-FNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRN  108 (289)
T ss_dssp             CCEEEEECSSSSEEEECCCSTTCHHHHHHHHHHHHH-TTCCEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCS
T ss_pred             ceEEEEEecCCceEEEeCCCCCChHHHHHHHHHHHH-cCCCceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCC
Confidence            57899999866 67899995211      00 0111 13479999999999  9999999997531  14678887544

>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A

Probab=98.51  E-value=7.6e-09  Score=71.53  Aligned_cols=69  Identities=9%  Similarity=-0.043  Sum_probs=49.0

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCC----CC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEF----QP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~----~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ..+.+|++++.++ .+|||+|...    .. ..+......+||+|++||+|  |+|+++.+.+   .+.+||+++.+.+.
T Consensus        65 ~~~~n~~li~~~~~~iLID~G~~~~~~~~l~~~l~~~~g~~i~~VilTH~H~DH~gg~~~~~~---~~a~v~~~~~~~~~  141 (265)
T 2y8b_A           65 VYSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRA---AGVATYTSPLTRQL  141 (265)
T ss_dssp             EEEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHH---TTCEEEECHHHHHH
T ss_pred             cccceEEEEEECCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEeCCCChhhcCCHHHHhh---CCCeEEECHHHHHH
Confidence            3467899999987 5689999621    00 01111102379999999999  9999998875   25899999887653

>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}

Probab=98.47  E-value=1.2e-08  Score=68.73  Aligned_cols=66  Identities=11%  Similarity=0.064  Sum_probs=47.2

Q ss_pred             cCCeEEEEeCC--eEEEeCcCCC----CC-CCCCC-CCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           7 HRSTVGRECCG--KVFVDSAPEF----QP-PLSQL-VDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         7 ~~S~~l~e~~~--~~llDcG~~~----~~-p~~~~-~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      +.+|++++.++  .+|||+|...    .. ..+.. +++..+ +|++||+|  |+|+++.+.+   +..+||+++.+.+.
T Consensus        29 ~~n~~li~~~~~~~iLiD~G~~~~~~~~l~~~l~~~~~~~~~-~vi~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~  104 (246)
T 2fhx_A           29 SSNVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKV-VAINTHFHLDGTGGNEIYKK---MGAETWSSDLTKQL  104 (246)
T ss_dssp             TEEEEEEECTTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEE-EEECCSSSHHHHTTHHHHHH---TTCEEEEEHHHHHH
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCcE-EEEeCCCCccccChHHHHhh---cCCEEEEcHHHHHH
Confidence            56899998754  4689999621    00 11111 355666 79999999  9999999875   46899999987653

>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}

Probab=98.46  E-value=5.3e-08  Score=70.84  Aligned_cols=35  Identities=11%  Similarity=0.156  Sum_probs=31.3

Q ss_pred             CCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhcc
Q psy9131          38 SEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIG   77 (78)
Q Consensus        38 ~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l~   77 (78)
                      .+||+|||||+|  |+|+||++.     +++||||+.|+++.
T Consensus        23 ~~i~ai~lTH~H~DHiggl~~l~-----~~pVy~s~~t~~ll   59 (336)
T 3zdk_A           23 GTARLFFLSHMHSDHTVGLSSTW-----ARPLYCSPITAHLL   59 (336)
T ss_dssp             CSSCEEECCCCCGGGSTTCSTTC-----CSCEEECHHHHHHH
T ss_pred             CCCCEEEECCChHHHHCchHHHc-----CCCEEecHHHHHHH
Confidence            589999999999  999999975     48999999998763

>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}

Probab=98.38  E-value=3.8e-08  Score=69.01  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=47.7

Q ss_pred             cccCCeEEEEe--CC-eEEEeCcCCCCC--------------CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcc
Q psy9131           5 RMHRSTVGREC--CG-KVFVDSAPEFQP--------------PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEG   65 (78)
Q Consensus         5 ~V~~S~~l~e~--~~-~~llDcG~~~~~--------------p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g   65 (78)
                      ..+-+||++..  ++ .+|||+|...+.              ..+... -.+|++||+||.|  |+++++.|.++  |..
T Consensus        14 ~~~~~~yli~~~~~~~~ilID~g~~~~~~~~~~~~~~~~~l~~~l~~~-g~~i~~Il~TH~H~DH~gg~~~l~~~--~~a   90 (298)
T 4efz_A           14 ATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAAL-GARVRWLLETHVHADHLSAAPYLKTR--VGG   90 (298)
T ss_dssp             TTCBEEEEEECTTTCEEEEESCCBEEETTTTEEECHHHHHHHHHHHHH-TCEEEEEECSSCCSSSBCCHHHHHHH--HCC
T ss_pred             CcccEEEEEEECCCCeEEEEcCCCCccccccccCcccHHHHHHHHHHC-CCcceEEEECCCchhhhhhHHHHHHH--hCC
Confidence            44667899976  44 578999963110              001111 1259999999999  99999999975  578


Q ss_pred             eEEechhhhh
Q psy9131          66 VVYATEPTLQ   75 (78)
Q Consensus        66 ~Iy~T~~T~~   75 (78)
                      +||+++.+.+
T Consensus        91 ~i~~~~~~~~  100 (298)
T 4efz_A           91 EIAIGRHVTR  100 (298)
T ss_dssp             EEEEETTHHH
T ss_pred             cEEEChhHHH
Confidence            9999887643

>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2

Probab=98.35  E-value=4e-08  Score=68.31  Aligned_cols=63  Identities=14%  Similarity=0.055  Sum_probs=44.2

Q ss_pred             CCeEEEEe-CC-eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEechhh
Q psy9131           8 RSTVGREC-CG-KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATEPT   73 (78)
Q Consensus         8 ~S~~l~e~-~~-~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~~T   73 (78)
                      .+||+++. ++ .++||+|..... ..+..... +|++|++||.|  |+|+++.+.+.  |. .+||+.+.+
T Consensus        19 n~~yli~~~~~~~vlID~G~~~~i~~~l~~~g~-~i~~Il~TH~H~DH~gg~~~l~~~--~~~~~v~~~~~~   87 (258)
T 2qed_A           19 NYIWVLTNDEGRCVIVDPGEAAPVLKAIAEHKW-MPEAIFLTHHHHDHVGGVKELLQH--FPQMTVYGPAET   87 (258)
T ss_dssp             EEEEEEECTTSEEEEECCSCHHHHHHHHHHHTC-EEEEEECCSCCHHHHTTHHHHHHH--CTTCEEEECGGG
T ss_pred             eEEEEEEECCCcEEEEeCCCcHHHHHHHHHcCC-CCCEEEeCCCCccccCCHHHHHHH--CCCCEEEecccc
Confidence            34899987 45 578999941000 11111122 79999999999  99999999864  55 899998754

>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A

Probab=98.32  E-value=4.1e-08  Score=68.09  Aligned_cols=64  Identities=9%  Similarity=-0.107  Sum_probs=45.0

Q ss_pred             CeEEEEeC--C-eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           9 STVGRECC--G-KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         9 S~~l~e~~--~-~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +||+++.+  + .++||+|..... ..+... ..+|++|++||.|  |+|+++.+.+.  |..+||+++.+.+
T Consensus        13 ~~yli~~~~~~~~~lID~g~~~~i~~~l~~~-g~~i~~Il~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~   82 (254)
T 1xm8_A           13 YAYILHDEDTGTVGVVDPSEAEPIIDSLKRS-GRNLTYILNTHHHYDHTGGNLELKDR--YGAKVIGSAMDKD   82 (254)
T ss_dssp             EEEEEECTTTCCEEEECCSSHHHHHHHHHHH-TCCCCEEECSSCCHHHHTTHHHHHHH--HCCEEEEEGGGGG
T ss_pred             EEEEEEECCCCEEEEEeCCCHHHHHHHHHHc-CCCccEEEECCCCCcccccHHHHHHH--cCCeEEEchhhhh
Confidence            49999874  3 468999941000 011111 2368999999999  99999999874  4689999887654

>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}

Probab=98.32  E-value=1.7e-07  Score=66.60  Aligned_cols=58  Identities=19%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             cCCeEEEEeCCeEEEeCcCCCCC-CCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131           7 HRSTVGRECCGKVFVDSAPEFQP-PLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL   74 (78)
Q Consensus         7 ~~S~~l~e~~~~~llDcG~~~~~-p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~   74 (78)
                      .|.|+++|.   +|+|+|..... .+.  ..+++.  |+|++||.|  |+|+++.+     ++.+||+.+...
T Consensus        31 ~G~s~lie~---iLiD~G~~~~l~~~l~~~gi~~~--~~IvlTH~H~DH~ggl~~l-----~~~~v~~~~~~~   93 (267)
T 3h3e_A           31 HGFSVLVDS---VLFDTGKSDVFLKNARKLGIDLP--KDVLISHGHYDHAGGLLYL-----SGKRVWLRKEAL   93 (267)
T ss_dssp             SSCEEEETT---EEECCCSSSHHHHHHHHTTCCCC--SEEECSCSCHHHHGGGGGC-----CSCEEEEEGGGG
T ss_pred             cEeHHeeee---EEEECCCcHHHHHHHHHCCcCcC--CEEEECCCChhhhCCHHHh-----cCCEEEECHHHH
Confidence            477889987   89999964211 111  124555  999999999  99999988     458999987654

>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A

Probab=98.32  E-value=5.5e-08  Score=67.43  Aligned_cols=69  Identities=13%  Similarity=0.039  Sum_probs=49.5

Q ss_pred             ccCCeEEEEeCCe-EEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhcc
Q psy9131           6 MHRSTVGRECCGK-VFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIG   77 (78)
Q Consensus         6 V~~S~~l~e~~~~-~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l~   77 (78)
                      |.-+|++++.++. +|||.|...+    + -.+.......|++||+||+|  |+|+++.+.+ .  ..++|+++.+.++.
T Consensus        73 ~~~N~ylv~~~~~~ilIDtg~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~H~DH~gg~~~l~~-~--~~~v~~~~~~~~~~  149 (270)
T 4eyb_A           73 VASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHA-A--GIATYANALSNQLA  149 (270)
T ss_dssp             EEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHHTTHHHHHH-T--TCEEEEEHHHHHHG
T ss_pred             cceEEEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCChhhcCcHHHHHH-C--CCeEEECHHHHHHH
Confidence            3457999998884 6799995211    0 01111123579999999999  9999999986 3  48999999887653

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=98.30  E-value=6.5e-08  Score=71.76  Aligned_cols=67  Identities=7%  Similarity=0.044  Sum_probs=47.3

Q ss_pred             cccCCeEEE--EeCC-eEEEeCcCCCCC--CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131           5 RMHRSTVGR--ECCG-KVFVDSAPEFQP--PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL   74 (78)
Q Consensus         5 ~V~~S~~l~--e~~~-~~llDcG~~~~~--p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~   74 (78)
                      ..+-+||++  +.++ .+|||+|...+.  ..+... ..+|++||+||.|  |+++++.|.+.  |..+||+++.+.
T Consensus        13 ~~~~n~yli~~~~~~~~ilID~g~~~~~~~~~l~~~-~~~i~~Il~TH~H~DH~gg~~~l~~~--~~~~i~~~~~~~   86 (474)
T 3tp9_A           13 GLAHASYLVGCQETGEACVIDPARDVEPYLLTAKRE-GLRIVAALETHIHADFVSGAREMADR--AGAAICVSDEGP   86 (474)
T ss_dssp             TTTEEEEEEEETTTCEEEEESCCSCCHHHHHHHHHH-TCEEEEEECSSCCSSSCCCHHHHHHH--HCCEEEEECCSC
T ss_pred             CceeEEEEEEECCCCEEEEEcCCCChHHHHHHHHHc-CCeeEEEEcCcCchhhhCCHHHHHHH--HCCcEEEcCcch
Confidence            446689999  5556 568999953110  011111 2369999999999  99999999874  578999987654

>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*

Probab=98.28  E-value=1.5e-07  Score=67.21  Aligned_cols=65  Identities=9%  Similarity=-0.091  Sum_probs=43.7

Q ss_pred             CeEEEEe--CC-eEEEeCcCCCC-C-CCCCC----CC----CCCccEEEecCCC--Ccchhhhhhhcc-----CCcceEE
Q psy9131           9 STVGREC--CG-KVFVDSAPEFQ-P-PLSQL----VD----FSEVNMILISNYL--SMLALPFITEGT-----GFEGVVY   68 (78)
Q Consensus         9 S~~l~e~--~~-~~llDcG~~~~-~-p~~~~----~~----~~~iDavliSh~H--H~g~LP~l~~~~-----gf~g~Iy   68 (78)
                      +||+++.  ++ .+|||+|...+ . ..+..    ..    +.+|++||+||.|  |+|+++.+.+..     +...+||
T Consensus        41 ~~ylI~~~~~~~~ilID~G~~~~~~~~~l~~~l~~~g~~~~~~~i~~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v~  120 (311)
T 2p18_A           41 FSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVV  120 (311)
T ss_dssp             EEEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHHHHHHHSCC--CCCEEE
T ss_pred             EEEEEEeCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCCCCCCccEEEeCCCCccccCCHHHHHHhhhhcccCCCCEEE
Confidence            4899998  45 56899974210 0 00110    12    4689999999999  999999998642     0157899


Q ss_pred             echhh
Q psy9131          69 ATEPT   73 (78)
Q Consensus        69 ~T~~T   73 (78)
                      +.+.+
T Consensus       121 ~~~~~  125 (311)
T 2p18_A          121 GGAND  125 (311)
T ss_dssp             EEGGG
T ss_pred             Eechh
Confidence            97654

>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}

Probab=98.23  E-value=2e-07  Score=64.25  Aligned_cols=67  Identities=4%  Similarity=-0.062  Sum_probs=46.4

Q ss_pred             cccCCeEEEEeC----C-eEEEeCcCCC-C-C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           5 RMHRSTVGRECC----G-KVFVDSAPEF-Q-P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         5 ~V~~S~~l~e~~----~-~~llDcG~~~-~-~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      +.+.+||+++.+    + .+|||+|... + . ..+.... .+||+||+||.|  |+++++.|.+.. ...+||+++.+
T Consensus        12 ~~~~~~yli~~~~~~~~~~ilID~g~~~~~~~~~~l~~~g-~~i~~Il~TH~H~DH~gg~~~l~~~~-~~~~v~~~~~~   88 (245)
T 2gcu_A           12 ESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELG-LKLIYAMNTHVHADHVTGTGLLKTKL-PGVKSVISKAS   88 (245)
T ss_dssp             TTTEEEEEEEETTSTTCEEEEESCBGGGHHHHHHHHHHHT-CEEEEEECSSCCSSSCBSHHHHHHHS-TTCEEEEEGGG
T ss_pred             CCceEEEEEEcCCCCCCcEEEEeCCCchHHHHHHHHHHCC-CeeeEEEeCCCChhhhhhHHHHHHhC-CCCeEEecccc
Confidence            456779999984    4 5689999631 0 0 1111111 259999999999  999999998621 35899998765

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=98.17  E-value=1.4e-07  Score=70.46  Aligned_cols=68  Identities=6%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             CcccCCeEEEEe--CC-eEEEeCcCCCCC--CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131           4 ERMHRSTVGREC--CG-KVFVDSAPEFQP--PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL   74 (78)
Q Consensus         4 ~~V~~S~~l~e~--~~-~~llDcG~~~~~--p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~   74 (78)
                      +..+-+||++..  ++ .+|||+|...+.  ..... ...+|++||+||.|  |+++++.|.+.  |..+||+++.+.
T Consensus        33 ~~~~~nsyli~~~~~~~~vlID~g~~~~~~~~~l~~-~g~~i~~Il~TH~H~DH~gg~~~l~~~--~~a~v~~~~~~~  107 (466)
T 3r2u_A           33 KHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADE-EGLTITHAAETHIHADFASGIRDVAIK--LNANIYVSGESD  107 (466)
T ss_dssp             TTTTEEEEEEEETTTCEEEEESCCSCCHHHHHHHHH-HTCEEEEEECSSCCSSSCCCHHHHHHH--HCCEEEEECCSC
T ss_pred             CCccceEEEEEeCCCCEEEEEcCCCCHHHHHHHHHH-CCCeeeEEEECCCChhhhccHHHHHHh--hCCeEEECcchh
Confidence            345678999953  45 578999952110  00111 12369999999999  99999999975  578999987543

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=98.11  E-value=3e-07  Score=71.81  Aligned_cols=68  Identities=9%  Similarity=-0.041  Sum_probs=48.3

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCCC-----CCCC-CCCCCCccEEEecCCC--Ccchhhhhhhc---cCCcceEEechhhhh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQP-----PLSQ-LVDFSEVNMILISNYL--SMLALPFITEG---TGFEGVVYATEPTLQ   75 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~~-----p~~~-~~~~~~iDavliSh~H--H~g~LP~l~~~---~gf~g~Iy~T~~T~~   75 (78)
                      .+|++++.++ .+|||+|.....     ..+. .++..+|++||+||.|  |+|+++.+.+.   .....+||+++.+.+
T Consensus       123 ~N~ylI~~~~g~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~  202 (658)
T 2cfu_A          123 ANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFME  202 (658)
T ss_dssp             SCEEEEECSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHH
T ss_pred             eEEEEEEECCEEEEEECCCCHHHHHHHHHHHHhhCCCCCceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHH
Confidence            5789999766 578999963110     1111 1346899999999999  99999988741   023579999987643

>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*

Probab=98.05  E-value=2.9e-07  Score=64.12  Aligned_cols=62  Identities=8%  Similarity=-0.108  Sum_probs=42.5

Q ss_pred             CCeEEEEeC--C-eEEEeCcCCCCC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechh
Q psy9131           8 RSTVGRECC--G-KVFVDSAPEFQP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEP   72 (78)
Q Consensus         8 ~S~~l~e~~--~-~~llDcG~~~~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~   72 (78)
                      .+||+++.+  + .++||+|..... ..+.... .+|++|++||.|  |+|+++.+.+.  | ..+||+.+.
T Consensus        12 n~~yli~~~~~~~~vlID~G~~~~i~~~l~~~g-~~i~~IllTH~H~DH~gg~~~l~~~--~~~~~v~~~~~   80 (260)
T 1qh5_A           12 NYMYLVIDDETKEAAIVDPVQPQKVVDAARKHG-VKLTTVLTTHHHWDHAGGNEKLVKL--ESGLKVYGGDD   80 (260)
T ss_dssp             EEEEEEEETTTTEEEEESCSSHHHHHHHHHHHT-CEEEEEECCCSSHHHHTTHHHHHHH--STTCEEEESCT
T ss_pred             eEEEEEEECCCCEEEEEcCCCHHHHHHHHHHcC-CCccEEEeCCCCccccCCHHHHHHH--CCCCEEEECcc
Confidence            448999884  4 568999941000 0111111 258999999999  99999999864  5 479999754

>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}

Probab=97.31  E-value=5.8e-07  Score=70.72  Aligned_cols=66  Identities=12%  Similarity=-0.038  Sum_probs=47.5

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCC----C-CCCCC-CCCCCccEEEecCCC--Ccchhhhhhhc---cCCcceEEechhh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQ----P-PLSQL-VDFSEVNMILISNYL--SMLALPFITEG---TGFEGVVYATEPT   73 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~----~-p~~~~-~~~~~iDavliSh~H--H~g~LP~l~~~---~gf~g~Iy~T~~T   73 (78)
                      .+|++++.++ .+|||+|....    . ..+.. ++..+|++||+||.|  |+|+++.+.+.   ..+..+||+++.+
T Consensus       133 ~N~~lI~~~~~~iLIDtG~~~~~a~~~l~~i~~~~~~~~I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~  210 (668)
T 2yhe_A          133 ANMTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGF  210 (668)
Confidence            3688888766 56899996321    1 11221 356889999999999  99999999852   1245799998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d2i7ta1	451	d.157.1.10 (A:9-459) Cleavage and polyadenylation	1e-04

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage and polyadenylation specificity factor subunit 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 16 CGKVFVDSAPEFQPPLSQLVDFSEVNMILISNYLS--MLALPFITEGTGFEGVVYATEPT 73
          CG +          P   L+D +E++++LIS++      ALP+  + T F+G  + T  T
Sbjct: 33 CG-IHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHAT 91

Query: 74 LQ 75
            
Sbjct: 92 KA 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d2i7ta1	451	Cleavage and polyadenylation specificity factor su	99.9
d2dkfa1	431	Putative RNA-degradation protein TTHA0252 {Thermus	99.84
d2i7xa1	514	Cleavage factor two protein 2, CFT2 {Baker's yeast	99.83
d1xtoa_	304	Coenzyme PQQ synthesis protein B, PqqB {Pseudomona	99.26
d1zkpa1	244	Hypothetical protein BA1088 (BAS1016) {Bacillus an	99.26
d1wraa1	305	Teichoic acid phosphorylcholine esterase Pce (LytD	99.14
d2aioa1	266	Zn metallo-beta-lactamase {Xanthomonas maltophilia	99.12
d2cbna1	305	Ribonuclease Z (RNase Z) {Escherichia coli [TaxId:	99.07
d1y44a1	307	Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId	98.99
d2gmna1	264	Zn metallo-beta-lactamase {Bradyrhizobium japonicu	98.97
d1p9ea_	294	Methyl parathion hydrolase {Pseudomonas sp. WBC-3	98.97
d1ztca1	207	Hypothetical protein TM0894 {Thermotoga maritima [	98.87
d1k07a_	262	Zn metallo-beta-lactamase {Fluoribacter gormanii,	98.85
d2e7ya1	280	Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax	98.83
d2q0ia1	298	Quinolone signal response protein PqsE {Pseudomona	98.73
d1vmea2	250	ROO-like flavoprotein TM0755, N-terminal domain {T	98.69
d2az4a1	183	Hypothetical protein EF2904 {Enterococcus faecalis	98.65
d1ycga2	249	Nitric oxide reductase N-terminal domain {Moorella	98.6
d1e5da2	249	Rubredoxin oxygen:oxidoreductase (ROO), N-terminal	98.48
d1x8ha_	228	Zn metallo-beta-lactamase {Aeromonas hydrophila, C	98.39
d1ko3a_	230	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	98.35
d1m2xa_	219	Zn metallo-beta-lactamase {Chryseobacterium mening	98.15
d2p97a1	200	Hypothetical protein Ava3068 {Anabaena variabilis	98.09
d1vjna_	209	Hypothetical protein TM0207 {Thermotoga maritima [	97.97
d1jjta_	220	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	97.81
d1znba_	230	Zn metallo-beta-lactamase {Bacteroides fragilis [T	97.75
d1mqoa_	221	Zn metallo-beta-lactamase {Bacillus cereus [TaxId:	97.67
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	97.15
d1xm8a_	254	Glyoxalase II (hydroxyacylglutathione hydrolase) {	96.43
d1qh5a_	260	Glyoxalase II (hydroxyacylglutathione hydrolase) {	94.76
d2qeda1	251	Glyoxalase II (hydroxyacylglutathione hydrolase) {	94.56

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage and polyadenylation specificity factor subunit 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.3e-25  Score=155.48  Aligned_cols=76  Identities=29%  Similarity=0.429  Sum_probs=66.9

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCC------CCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechh
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEF------QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEP   72 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~------~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~   72 (78)
                      +.+||||||++++.++ ++|||||+..      ..|....+++++||+|||||+|  |+|+||+|..+.+|+++||||++
T Consensus        11 G~~eIG~n~~lv~~~~~~il~D~G~~~~~~~~~~~p~~~~~~~~~id~i~lTH~H~DH~ggLp~l~~~~~~~~pIy~s~~   90 (451)
T d2i7ta1          11 AGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHA   90 (451)
T ss_dssp             SSSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHH
T ss_pred             CCCcccccEEEEEECCeEEEEeCCCCCCccccccCCCccCCCHhhCCEEEECCCcHHHhCchHHHHHhcCCCCCEEechh
Confidence            4789999999999999 6789999632      2366667888999999999999  99999999987889999999999


Q ss_pred             hhhcc
Q psy9131          73 TLQIG   77 (78)
Q Consensus        73 T~~l~   77 (78)
                      |+++.
T Consensus        91 T~~l~   95 (451)
T d2i7ta1          91 TKAIY   95 (451)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            99875

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Putative RNA-degradation protein TTHA0252
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=8e-22  Score=142.17  Aligned_cols=75  Identities=23%  Similarity=0.244  Sum_probs=62.6

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCC---CCCCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhh
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEF---QPPLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPT   73 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~---~~p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T   73 (78)
                      .++||||||++++.++ ++|||||+..   ..+..  ..+++++||+|+|||+|  |+|+||+|++ .+|+++||+|++|
T Consensus         8 g~~~ig~sc~lv~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~id~I~iTH~H~DHigglp~l~~-~~~~~~i~~~~~t   86 (431)
T d2dkfa1           8 AAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATRAT   86 (431)
T ss_dssp             CSSSSSCCEEEEEETTEEEEEEECCCCGGGTTTTTSCCSSCGGGCCEEECCSCCSTTTTTHHHHHH-TTCCSCEEECHHH
T ss_pred             CCCCCcccEEEEEECCcEEEEECCCCCCcccccchhhcCCChhhCCEEEECCCChHHHCchHHHHh-cCCCCcEEcCHHH
Confidence            4789999999999999 6789999521   11222  23688999999999999  9999999996 7899999999999


Q ss_pred             hhcc
Q psy9131          74 LQIG   77 (78)
Q Consensus        74 ~~l~   77 (78)
                      .++.
T Consensus        87 ~~~~   90 (431)
T d2dkfa1          87 VLLM   90 (431)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.7e-22  Score=151.14  Aligned_cols=77  Identities=16%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             CCCcccCCeEEEEeCC-eEEEeCcCCCCC------CCCCCCCCCCccEEEecCCC--Ccchhhhhhhc----cCCcceEE
Q psy9131           2 DTERMHRSTVGRECCG-KVFVDSAPEFQP------PLSQLVDFSEVNMILISNYL--SMLALPFITEG----TGFEGVVY   68 (78)
Q Consensus         2 ~~~~V~~S~~l~e~~~-~~llDcG~~~~~------p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~----~gf~g~Iy   68 (78)
                      +++.-+.||+++|.+| ++|||||+....      +.+...++++||||||||+|  |+|+||+|+++    .||+++||
T Consensus         9 ~~g~g~~sc~ll~~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~~~~~pIy   88 (514)
T d2i7xa1           9 DDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVY   88 (514)
T ss_dssp             CSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEE
T ss_pred             cCCCceeeEEEEEECCeEEEEECCCCcCccchhhhhhhhhcCcccCCEEEECCCChHHHCchHHHHHhcccccCCCcCEE
Confidence            4566688999999999 778999974322      22233577899999999999  99999999853    36889999


Q ss_pred             echhhhhccC
Q psy9131          69 ATEPTLQIGK   78 (78)
Q Consensus        69 ~T~~T~~l~r   78 (78)
                      ||+||++|++
T Consensus        89 ~T~~T~~l~~   98 (514)
T d2i7xa1          89 ATLPVINLGR   98 (514)
T ss_dssp             EEHHHHHHHH
T ss_pred             eCHHHHHHHH
Confidence            9999998863

>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Coenzyme PQQ synthesis protein B, PqqB
domain: Coenzyme PQQ synthesis protein B, PqqB
species: Pseudomonas putida [TaxId: 303]

Probab=99.26  E-value=4.9e-12  Score=83.39  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=53.3

Q ss_pred             cccCCeEEEEeCC--eEEEeCcCC--C------CCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechh
Q psy9131           5 RMHRSTVGRECCG--KVFVDSAPE--F------QPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEP   72 (78)
Q Consensus         5 ~V~~S~~l~e~~~--~~llDcG~~--~------~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~   72 (78)
                      .-++||++++.+|  .+|||||+-  .      .......+++++||+|+|||+|  |+.+||.|.+.  ..-++|+.+.
T Consensus        36 ~R~~ss~~i~~~g~~~lLiD~G~~~~~ql~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~~GL~~l~~~--~~~~v~~~~~  113 (304)
T d1xtoa_          36 ARTQSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREG--CPHQVWCTDM  113 (304)
T ss_dssp             CBCBCEEEEESSSSSEEEESCCTTHHHHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGG--CCEEEEECHH
T ss_pred             cceeeEEEEEeCCCeEEEEeCCchHHHHHHhhhhhhhhcccCCccceEEEEecCCcCeehhHHHHhhh--ccccccccch
Confidence            4577999999866  368999961  1      1112334688999999999999  99999999864  3468999988


Q ss_pred             hhhc
Q psy9131          73 TLQI   76 (78)
Q Consensus        73 T~~l   76 (78)
                      +.+.
T Consensus       114 ~~~~  117 (304)
T d1xtoa_         114 VHQD  117 (304)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            8753

>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: YhfI-like
domain: Hypothetical protein BA1088 (BAS1016)
species: Bacillus anthracis [TaxId: 1392]

Probab=99.26  E-value=5e-13  Score=88.61  Aligned_cols=54  Identities=17%  Similarity=0.267  Sum_probs=41.1

Q ss_pred             cccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhh
Q psy9131           5 RMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFIT   58 (78)
Q Consensus         5 ~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~   58 (78)
                      ..+.||++++.+| ++|||||+.........+++.+||+|+|||+|  |+++||.|.
T Consensus        16 ~~~~s~~lv~~~~~~iLID~G~~~~~~l~~~~~~~~id~i~iTH~H~DH~~gl~~l~   72 (244)
T d1zkpa1          16 GEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQ   72 (244)
T ss_dssp             TCCBSEEEEEETTEEEEECCCTTHHHHHTTTCCGGGCCEEECSCCCHHHHTTHHHHH
T ss_pred             CCCcCEEEEEECCeEEEEeCCCcHHHHHHhhcCCccCceEEeecccccccCchhhhh
Confidence            3456999999999 67899997211001113578899999999999  999999876

>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Pce catalytic domain-like
domain: Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.14  E-value=4e-11  Score=81.29  Aligned_cols=63  Identities=13%  Similarity=0.258  Sum_probs=45.9

Q ss_pred             CeEEEEeCCe-EEEeCcCCCCC-----C---CCC-------------------CCCCCCccEEEecCCC--Ccchhhhhh
Q psy9131           9 STVGRECCGK-VFVDSAPEFQP-----P---LSQ-------------------LVDFSEVNMILISNYL--SMLALPFIT   58 (78)
Q Consensus         9 S~~l~e~~~~-~llDcG~~~~~-----p---~~~-------------------~~~~~~iDavliSh~H--H~g~LP~l~   58 (78)
                      .|++++.+++ +|||||.....     +   ...                   .....+||+++|||+|  |+|+||.|+
T Consensus        15 ~~ili~~~g~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gi~~ID~lilTH~h~DHigGl~~ll   94 (305)
T d1wraa1          15 DAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELL   94 (305)
T ss_dssp             CEEEEEETTEEEEEEECCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCEEEEECCCSCHHHHTTHHHHH
T ss_pred             EEEEEEECCEEEEEECCCCCccccccccccccccccccccccchHHHHHHHHHHcCCCcccEEEECCCCcchhcCHHHHH
Confidence            4999999884 68999962111     1   100                   1123789999999999  999999999


Q ss_pred             hccCCc-ceEEechhh
Q psy9131          59 EGTGFE-GVVYATEPT   73 (78)
Q Consensus        59 ~~~gf~-g~Iy~T~~T   73 (78)
                      ++  |+ ++||+....
T Consensus        95 ~~--~~i~~v~~~~~~  108 (305)
T d1wraa1          95 ST--YPVDRVYLKKYS  108 (305)
T ss_dssp             TT--SCEEEEECCCCC
T ss_pred             Hh--CCCCEEEeCCCc
Confidence            63  55 789987644

>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Xanthomonas maltophilia [TaxId: 40324]

Probab=99.12  E-value=6e-12  Score=85.33  Aligned_cols=67  Identities=12%  Similarity=0.017  Sum_probs=51.8

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCCC----CCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQP----PLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~~----p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +-|||+++.++ .+|||||+....    ..+  ..+++.+||+|++||+|  |+|+++.+.+.  +..+||+++.+.+
T Consensus        36 ~~~~yli~~~~g~vLIDtG~~~~~~~~~~~l~~~G~~~~~I~~Ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~  111 (266)
T d2aioa1          36 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRR--TGAKVAANAESAV  111 (266)
T ss_dssp             SSCCEEEEETTEEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHH--SSCEEEECHHHHH
T ss_pred             CcEEEEEEeCCEEEEEeCCCchhhHHHHHHHHHcCCChHHeEEEEecCCCcccccchHHHhhh--cceEEEEEechhh
Confidence            45899999988 568999963211    111  12677899999999999  99999999864  5689999987654

>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.4e-11  Score=83.17  Aligned_cols=66  Identities=14%  Similarity=0.131  Sum_probs=45.0

Q ss_pred             CCeEEEEe----CC-eEEEeCcCC--CCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhcc---CCc--ceEEechhh
Q psy9131           8 RSTVGREC----CG-KVFVDSAPE--FQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGT---GFE--GVVYATEPT   73 (78)
Q Consensus         8 ~S~~l~e~----~~-~~llDcG~~--~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~---gf~--g~Iy~T~~T   73 (78)
                      .||++++.    ++ ++|+|||.-  .++.+. .+++++||+|+|||+|  |+++||.|....   |-+  -.||.-+.+
T Consensus        19 ~s~~li~~~~~~~~~~iL~DcG~g~~~~l~~~-~~~~~~i~~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~i~gP~~~   97 (305)
T d2cbna1          19 VTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT-AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGI   97 (305)
T ss_dssp             BCEEEEECCCSSCCCEEEECCCTTHHHHHHTS-CCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTH
T ss_pred             cCEEEEEEecCCCCcEEEEeCchHHHHHHHHh-CCCHHHCcEEEEccccHHHhCchhhhhhhhhccCCcccccccCChhH
Confidence            59999985    44 578999951  112222 3577899999999999  999999886321   112  357765544


Q ss_pred             h
Q psy9131          74 L   74 (78)
Q Consensus        74 ~   74 (78)
                      .
T Consensus        98 ~   98 (305)
T d2cbna1          98 R   98 (305)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.99  E-value=6.9e-11  Score=79.83  Aligned_cols=68  Identities=16%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             ccCCeEEEEe---CC-eEEEeCcCC--CCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhhc---cCCc--ceEEechh
Q psy9131           6 MHRSTVGREC---CG-KVFVDSAPE--FQPPLSQLVDFSEVNMILISNYL--SMLALPFITEG---TGFE--GVVYATEP   72 (78)
Q Consensus         6 V~~S~~l~e~---~~-~~llDcG~~--~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~---~gf~--g~Iy~T~~   72 (78)
                      -..||+++++   ++ .+|||||.-  .++... .+++++||+|+|||+|  |+++||.+...   .+.+  -.||..+.
T Consensus        17 r~~s~~~v~~~~~~~~~iLiD~G~g~~~~l~~~-~~~~~~i~~I~iTH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~   95 (307)
T d1y44a1          17 RNVTSVALKLLEERRSVWLFDCGEATQHQMLHT-TIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKG   95 (307)
T ss_dssp             CCBCEEEEEETTTTSEEEEECCCTTHHHHHTTS-SCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTT
T ss_pred             CCcCEEEEEEEccCCCEEEEeCcHHHHHHHHHc-CCChhHCCEEEEcccchHhccchhhhhhhhcccCCCCcccccCCcc
Confidence            3468998875   44 468999961  112222 2567899999999999  99999987631   1222  45787665


Q ss_pred             hh
Q psy9131          73 TL   74 (78)
Q Consensus        73 T~   74 (78)
                      +.
T Consensus        96 ~~   97 (307)
T d1y44a1          96 IK   97 (307)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.97  E-value=5.4e-11  Score=80.58  Aligned_cols=68  Identities=10%  Similarity=0.032  Sum_probs=51.9

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCCCCC----C--CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQPPL----S--QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~~p~----~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      +.||++++.++ .+|||+|+....+.    +  -.+++++|+.||+||+|  |+|+++.|.++  |..+||+++.+..+
T Consensus        26 ~~n~~lI~~~~~~vLIDtG~~~~~~~~~~~i~~~~~~~~~I~~ii~TH~H~DH~gg~~~l~~~--~~a~i~~~~~~~~~  102 (264)
T d2gmna1          26 GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKE--TGAQLVAGERDKPL  102 (264)
T ss_dssp             SSCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHH--HCCEEEEEGGGHHH
T ss_pred             CeEEEEEEECCEEEEEcCCCcchHHHHHHHHHHcCCCchheEEEEECCCCcccccchhHHHHh--cCCeEEeecccccc
Confidence            56899999988 56899996321111    1  12567889999999999  99999999864  46899999877653

>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Methyl parathion hydrolase
domain: Methyl parathion hydrolase
species: Pseudomonas sp. WBC-3 [TaxId: 165468]

Probab=98.97  E-value=2.2e-10  Score=78.98  Aligned_cols=68  Identities=16%  Similarity=0.016  Sum_probs=49.4

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCC----CCC----C--CCCCCCCccEEEecCCC--CcchhhhhhhccCCc-ceEEech
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQ----PPL----S--QLVDFSEVNMILISNYL--SMLALPFITEGTGFE-GVVYATE   71 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~----~p~----~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~-g~Iy~T~   71 (78)
                      +.=+|++++.++ .+|||||+...    ...    +  .-+++++||.|++||+|  |+|+++.+.+ ..|. .++++.+
T Consensus        60 ~~vn~~LI~~~~~~iLiDtG~g~~~~~~~~~l~~~L~~~Gi~p~dI~~VilTH~H~DHiGgl~~~~~-~~~p~~~~~~~~  138 (294)
T d1p9ea_          60 TSVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQ-LAFPNAVVRADQ  138 (294)
T ss_dssp             EEEEEEEEECSSCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTE-ESSTTCEEECBH
T ss_pred             eeeEEEEEEECCeEEEEECCCCcccCccHHHHHHHHHHcCCCHHHCcEEECCCCCccccCchhhhhh-hccCCceeehhh
Confidence            344799999988 67899996211    111    1  13688999999999999  9999988775 4454 7777776


Q ss_pred             hhh
Q psy9131          72 PTL   74 (78)
Q Consensus        72 ~T~   74 (78)
                      ...
T Consensus       139 ~e~  141 (294)
T d1p9ea_         139 KEA  141 (294)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            544

>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: TM0894-like
domain: Hypothetical protein TM0894
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=3.1e-10  Score=72.02  Aligned_cols=52  Identities=8%  Similarity=0.059  Sum_probs=39.5

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCCC----CCC--CCCCCCCccEEEecCCC--Ccchhhhhhh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQP----PLS--QLVDFSEVNMILISNYL--SMLALPFITE   59 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~~----p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~   59 (78)
                      .+|++++.++ .+|||||+....    ..+  ..+++++||+||+||+|  |+|+++.+.+
T Consensus        23 ~~~~li~~~~~~iliD~G~~~~~~~~~~~l~~~g~~~~~I~~IiiTH~H~DH~gg~~~~~~   83 (207)
T d1ztca1          23 STVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFEN   83 (207)
T ss_dssp             CCEEEEEETTEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCTT
T ss_pred             eEEEEEEECCeEEEEeCCCCccHHHHHHHHHHcCCChHHeeEEEeCCCCccccccchhccC
Confidence            6889999988 568999973211    111  13577899999999999  9999987653

>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]

Probab=98.85  E-value=2e-10  Score=77.08  Aligned_cols=66  Identities=14%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCCCCC----CC--CCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQPPL----SQ--LVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~~p~----~~--~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      -+|++++.++ .+|||+|.....+.    +.  .+++.+|++|++||+|  |+|+++.+.++  +..+||+++++..
T Consensus        24 ~~~~li~~~~~~vLID~g~~~~~~~i~~~l~~~~~~~~~i~~il~TH~H~DH~gg~~~~~~~--~~~~i~~~~~~~~   98 (262)
T d1k07a_          24 LASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQ--TKAKYMVMDEDVS   98 (262)
T ss_dssp             BCCEEEEETTEEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHH--HCCEEEEEHHHHH
T ss_pred             cEEEEEEECCEEEEEeCCCchhHHHHHHHHHHcCCCccceeEEEECCCccccccchhhHhhc--cCCceEechhHHH
Confidence            4789999988 56899996321111    11  2577899999999999  99999998764  5699999987654

>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=2.9e-10  Score=75.32  Aligned_cols=47  Identities=4%  Similarity=-0.019  Sum_probs=34.1

Q ss_pred             EEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccchhhhhhh
Q psy9131          11 VGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITE   59 (78)
Q Consensus        11 ~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~   59 (78)
                      ..+.+++ ++|||||.-.. ..+ ..+..+||+|+|||+|  |+++||.|..
T Consensus        13 t~~~~~~~~iLiD~G~g~~-~~l-~~~~~~i~~I~ITH~H~DHi~GLp~l~~   62 (280)
T d2e7ya1          13 TWIYYSPERILFDAGEGVS-TTL-GSKVYAFKYVFLTHGHVDHIAGLWGVVN   62 (280)
T ss_dssp             EEEEEGGGTEEEEECTTHH-HHH-GGGGGGCCEEECSCCCHHHHTTHHHHHH
T ss_pred             EEEEECCCEEEEECChhHH-HHh-hhccccCCEEEEecCchhhhcCcHHHHH
Confidence            3555666 78999994100 011 2356889999999999  9999998874

>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: PqsE-like
domain: Quinolone signal response protein PqsE
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.73  E-value=1.4e-09  Score=74.09  Aligned_cols=68  Identities=19%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             ccCCeEEEEeCC-e-EEEeCcCCCCC----CCC--CCCCCCCccEEEecCCC--CcchhhhhhhccCC-cceEEechhhh
Q psy9131           6 MHRSTVGRECCG-K-VFVDSAPEFQP----PLS--QLVDFSEVNMILISNYL--SMLALPFITEGTGF-EGVVYATEPTL   74 (78)
Q Consensus         6 V~~S~~l~e~~~-~-~llDcG~~~~~----p~~--~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf-~g~Iy~T~~T~   74 (78)
                      ..-+||++..++ . +|||+|.....    .++  ..+++++||+|++||+|  |+|+++.+.++  | ..+||+++.+.
T Consensus        20 ~~~~~yli~~~~~~~vLID~G~~~~~~~~~~~l~~~~~~~~~I~~vi~TH~H~DH~Gg~~~l~~~--~p~a~v~~~~~~~   97 (298)
T d2q0ia1          20 VQVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPR--LPNVQVLASERTC   97 (298)
T ss_dssp             TTSCEEEEEEETTEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSHHHHTTHHHHGGG--CTTCEEEEEHHHH
T ss_pred             CccEEEEEEECCCCEEEEcCCCCchHHHHHHHHHHcCCCchhceEEEeCCCCccccCchhhHHhh--CCCCEEEecHHHH
Confidence            344788888754 4 58999962111    111  13688999999999999  99999999864  5 48999998776


Q ss_pred             h
Q psy9131          75 Q   75 (78)
Q Consensus        75 ~   75 (78)
                      +
T Consensus        98 ~   98 (298)
T d2q0ia1          98 Q   98 (298)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: ROO N-terminal domain-like
domain: ROO-like flavoprotein TM0755, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=1.2e-09  Score=72.43  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             CeEEEEeCC-eEEEeCcCCCCCCC-----CCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           9 STVGRECCG-KVFVDSAPEFQPPL-----SQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         9 S~~l~e~~~-~~llDcG~~~~~p~-----~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +||+++.++ .+|||.|.......     ...+++++|+.|++||+|  |+|+++.+.++.+-...+|+++.+..
T Consensus        41 N~yLI~~~~~~vLIDtG~~~~~~~~~~~l~~~~~~~~I~~IilTH~H~DH~Gg~~~~~~~~~~~~~i~~~~~~~~  115 (250)
T d1vmea2          41 NAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKR  115 (250)
T ss_dssp             EEEEEECSSCEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHH
T ss_pred             EEEEEEECCEEEEEeCCChhHHHHHHHHHHhhCCcccccEEEECCCChhhhchHHHHHHhcCcceEEEechhhhh
Confidence            499999877 57899996211111     123578999999999999  99999999875433467888887654

>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Hypothetical protein EF2904
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.65  E-value=6e-09  Score=67.22  Aligned_cols=54  Identities=9%  Similarity=0.043  Sum_probs=40.5

Q ss_pred             EEEeCcCCCCCCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhcc
Q psy9131          19 VFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIG   77 (78)
Q Consensus        19 ~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l~   77 (78)
                      .++|.|+-++..... -++.+++||+|||+|  |+++||+|.+    +.+||+++.|..+.
T Consensus        10 ~~~dp~~~~~~~~~~-~~~~~~~AI~iTH~H~DH~~gl~~l~~----~~~i~~~~~~~~~~   65 (183)
T d2az4a1          10 DLYDPRLGYEYHGAE-DKDYQHTAVFLSHAHLDHSRMINYLDP----AVPLYTLKETKMIL   65 (183)
T ss_dssp             SCBCGGGCCCCCSSC-CCCCSEEEEECSCSCHHHHTTGGGBCT----TSCEEEEHHHHHHH
T ss_pred             ceECCCCCchhhhHh-hcCCceeEEEEcCCChHhhCchHHHhh----cceEecCHHHHHHH
Confidence            467877633332222 356789999999999  9999999975    36899999997653

>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: ROO N-terminal domain-like
domain: Nitric oxide reductase N-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=98.60  E-value=4e-09  Score=69.91  Aligned_cols=66  Identities=17%  Similarity=0.069  Sum_probs=48.9

Q ss_pred             CeEEEEeCCeEEEeCcCCCCCC----CC-CCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           9 STVGRECCGKVFVDSAPEFQPP----LS-QLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         9 S~~l~e~~~~~llDcG~~~~~p----~~-~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      +||++.-++.+|||+|......    .. ..+++++|+.|++||+|  |+|+++.+.++. -..++++++.+.+
T Consensus        37 N~yli~~e~~~LIDtg~~~~~~~~~~~~~~~~~~~~i~~Ii~TH~H~DH~gg~~~~~~~~-~~~~~~~~~~~~~  109 (249)
T d1ycga2          37 NAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELC-PDAHVLCTQRAFD  109 (249)
T ss_dssp             CCEEECSSSCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHC-TTCEEEECHHHHH
T ss_pred             EEEEEeCCCEEEEECCCchhhHHHHHHHHHhcCCCCceEEEecccccchhhHHHHHHHhh-ccceEeeehHHHH
Confidence            7899976557899999521111    11 12567899999999999  999999998743 3578999887654

>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: ROO N-terminal domain-like
domain: Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=98.48  E-value=8.3e-09  Score=68.60  Aligned_cols=67  Identities=12%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             CCeEEEEeCCeEEEeCcCCCCC-----CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           8 RSTVGRECCGKVFVDSAPEFQP-----PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         8 ~S~~l~e~~~~~llDcG~~~~~-----p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      -+||++.-++.+|||.|.....     .....+++++|+.|++||+|  |+|+++.+.++. -..++|++++...
T Consensus        34 ~N~ylI~~~~~vLIDtg~~~~~~~~~~~~~~~~~~~~I~~Ii~TH~H~DH~gg~~~~~~~~-~~~~~~~~~~~~~  107 (249)
T d1e5da2          34 YNAYLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEAC-QPEKIFTSSLGQK  107 (249)
T ss_dssp             EEEEEECSSSCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHH-CCSEEEEEHHHHH
T ss_pred             EEEEEEEcCCEEEEeCCChHHHHHHHHHHHHhcCCCCccEEEeCCcChHhhchHHHHHHHh-cccceeehhhhHH
Confidence            3689997555678999952111     11223678999999999999  999999998743 2477888776543

>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Aeromonas hydrophila, CphA [TaxId: 644]

Probab=98.39  E-value=2.4e-08  Score=65.41  Aligned_cols=66  Identities=14%  Similarity=0.025  Sum_probs=46.7

Q ss_pred             CCeEEEEeCC-eEEEeCcCCC----CC-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           8 RSTVGRECCG-KVFVDSAPEF----QP-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~----~~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      .+++++..++ -+|||+|...    +. ..+..+....|+.|++||+|  |+|+++++-+ .  ..+||+++.+.++
T Consensus        23 ~N~~~i~~~~g~vlID~g~~~~~~~~l~~~i~~~~~~~i~~ii~TH~H~DH~gg~~~~~~-~--~~~i~a~~~~~~~   96 (228)
T d1x8ha_          23 ENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKS-I--GAKVVSTRQTRDL   96 (228)
T ss_dssp             EEEEEEECSSCEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHH-T--TCEEEEEHHHHHH
T ss_pred             ceEEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCCceEEEECCCCccccccchhhcc-c--CceeeccHHHHHH
Confidence            3567776655 5679999521    00 11223455779999999999  9999999875 3  3799999988764

>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Pseudomonas aeruginosa, VIM-2 [TaxId: 287]

Probab=98.35  E-value=3.9e-08  Score=63.91  Aligned_cols=65  Identities=9%  Similarity=-0.021  Sum_probs=47.0

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQ   75 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~   75 (78)
                      .++++++.++ .+|||+|+...    . -.+......+|++|++||.|  |+|+++.+.+.   ...+++++.+..
T Consensus        38 ~N~~li~~~~~~vLID~g~~~~~~~~~~~~i~~~~~~~i~~ii~TH~H~DH~gg~~~~~~~---~~~~~~~~~~~~  110 (230)
T d1ko3a_          38 SNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAA---GVATYASPSTRR  110 (230)
T ss_dssp             EEEEEEEETTEEEEESCCSSHHHHHHHHHHHHTTTCCCEEEEECSSSSHHHHTTHHHHHHT---TCEEEECHHHHH
T ss_pred             cEEEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhcCCeeEEEEECCCCccccCCHHHHhhc---CCceEeeccccc
Confidence            4689999888 56799996211    0 11223345689999999999  99999999863   367888877654

>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]

Probab=98.15  E-value=3.1e-07  Score=58.96  Aligned_cols=68  Identities=15%  Similarity=-0.022  Sum_probs=48.3

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCCC-----CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQP-----PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~~-----p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ++.+++++..++ .+|+|.|.....     ..+......+|+.|++||+|  |+|+++.+.+ .  ..++|+++.+...
T Consensus        25 ~~~n~~~i~~~~~~iliD~g~~~~~~~~l~~~~~~~~~~~i~~vi~TH~H~DH~gg~~~~~~-~--~~~~~~~~~~~~~  100 (219)
T d1m2xa_          25 YAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGK-I--GAKTYSTKMTDSI  100 (219)
T ss_dssp             EEEEEEEEEETTEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHH-T--TCEEEEEHHHHHH
T ss_pred             cccEEEEEEECCEEEEEECCCCHHHHHHHHHHHHhccCCceeEEEeCCCCccccCcHHHHHh-c--CCCeecchhhHhH
Confidence            445688888877 568999952111     01112345789999999999  9999999875 3  4789998877653

>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Ava3068-like
domain: Hypothetical protein Ava3068
species: Anabaena variabilis [TaxId: 1172]

Probab=98.09  E-value=3e-07  Score=59.88  Aligned_cols=69  Identities=7%  Similarity=-0.016  Sum_probs=50.0

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCCCCC--CCCCCCCCCCccEEEecCCCCcchhhhhhhccCCcceEEechhhhhc
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPEFQP--PLSQLVDFSEVNMILISNYLSMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~~~~--p~~~~~~~~~iDavliSh~HH~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ....-+|+++..++ .+|||.|+..+.  ..+.  ...+|++|++||.+|.|+++.+.++  |..+||+.+.+...
T Consensus        19 ~~~~~n~~~v~~~~g~vlIDp~~~~~~~~~~l~--~~g~i~~vi~TH~DH~g~~~~~~~~--~~a~i~~~~~~~~~   90 (200)
T d2p97a1          19 RNIDFNGFAWIRPEGNILIDPVALSNHDWKHLE--SLGGVVWIVLTNSDHVRSAKEIADQ--TYTKIAGPVAEKEN   90 (200)
T ss_dssp             TTEEEEEEEECCTTCCEEESCCCCCHHHHHHHH--HTTCCSEEECSSGGGCTTHHHHHHH--SCCEEEEEGGGTTS
T ss_pred             CccccEEEEEEECCeeEEEECCcChHHHHHHHH--hcCCccEEEecCccccchHHHHHHh--cCceEEeecccccc
Confidence            34455889988866 678999862111  1111  2358999999999999999999875  56899998876553

>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Hypothetical protein TM0207
domain: Hypothetical protein TM0207
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=2.6e-06  Score=56.20  Aligned_cols=46  Identities=9%  Similarity=-0.029  Sum_probs=29.8

Q ss_pred             CcccCCeEEEEeCC-eEEEeCcCCCCCCCCCCCCCCCccEEEecCCC--Ccc
Q psy9131           4 ERMHRSTVGRECCG-KVFVDSAPEFQPPLSQLVDFSEVNMILISNYL--SML   52 (78)
Q Consensus         4 ~~V~~S~~l~e~~~-~~llDcG~~~~~p~~~~~~~~~iDavliSh~H--H~g   52 (78)
                      .=.|-||+++|.+| ++|+|=  ....+... ...-++|+||+||.|  |..
T Consensus         5 twlGhs~~lIe~~g~~iliDP--~~~~~~~~-~~~~~~D~VliSH~H~DH~~   53 (209)
T d1vjna_           5 TWFGHACFALEMEGKTIVTDP--FDESVGYP-IPNVTADVVTESHQHFDHNA   53 (209)
T ss_dssp             EEEETTEEEEEETTEEEEESC--CC-----C-CCCCBCSEEECSSCC---CG
T ss_pred             EEecccEEEEEECCEEEEECC--CCCccCCC-CccCcCCEEEECCCCCCcCc
Confidence            34688999999999 678993  22222221 233467999999999  853

>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Pseudomonas aeruginosa, IMP-1 [TaxId: 287]

Probab=97.81  E-value=1.4e-06  Score=56.97  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=47.2

Q ss_pred             ccCCeEEEEeCC-eEEEeCcCCCC-C----CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           6 MHRSTVGRECCG-KVFVDSAPEFQ-P----PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         6 V~~S~~l~e~~~-~~llDcG~~~~-~----p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      ++.+++++..++ .+|+|.|...+ .    ..+.. ...+|++|++||+|  |+|+...+.+ .  ..++|+++.+.++
T Consensus        29 ~~~n~~~i~~~~~~~liDt~~~~~~~~~~~~~i~~-~~~~i~~vi~TH~H~DH~gg~~~~~~-~--~~~v~~~~~~~~~  103 (220)
T d1jjta_          29 VPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVE-RGYKIKGSISSHFHSDSTGGIEWLNS-R--SIPTYASELTNEL  103 (220)
T ss_dssp             EEEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHT-TTCEEEEEECSSSSHHHHTTHHHHHH-T--TCCEEEEHHHHHH
T ss_pred             ECceEEEEEECCEEEEEeCCCCHHHHHHHHHHHHh-cCCCeEEEEECCccccccchHHHHHh-c--CCCeeechhhhhh
Confidence            344677888877 46899985211 0    11111 24579999999999  9999998875 3  5899999887654

>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Bacteroides fragilis [TaxId: 817]

Probab=97.75  E-value=6.2e-07  Score=58.28  Aligned_cols=65  Identities=11%  Similarity=0.108  Sum_probs=45.2

Q ss_pred             CeEEEEeCC-eEEEeCcCCCC-CC----CCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhc
Q psy9131           9 STVGRECCG-KVFVDSAPEFQ-PP----LSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQI   76 (78)
Q Consensus         9 S~~l~e~~~-~~llDcG~~~~-~p----~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l   76 (78)
                      +++++..++ .+|||.|+..+ ..    .+.......|++|++||+|  |+|+++.+-+ .+  .++|+++.+...
T Consensus        36 N~~~i~~~~~~iliD~g~~~~~~~~l~~~i~~~~~~~i~~vi~TH~H~DH~gg~~~~~~-~~--~~~~~~~~~~~~  108 (230)
T d1znba_          36 NGMIVINNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQK-KG--VQSYANQMTIDL  108 (230)
T ss_dssp             EEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHH-TT--CEEEEEHHHHHH
T ss_pred             eEEEEEECCEEEEEECCCCHHHHHHHHHHHHHhcCCcceEEEECCCcccccCcHHHHhh-hh--ccccccchhhhh
Confidence            467777777 56799996211 01    1111234678999999999  9999999886 33  688888877653

>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Zn metallo-beta-lactamase
domain: Zn metallo-beta-lactamase
species: Bacillus cereus [TaxId: 1396]

Probab=97.67  E-value=1e-06  Score=57.72  Aligned_cols=68  Identities=13%  Similarity=0.030  Sum_probs=46.9

Q ss_pred             cCCeEEEEeCC-eEEEeCcCCCC----C-CCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhhhcc
Q psy9131           7 HRSTVGRECCG-KVFVDSAPEFQ----P-PLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTLQIG   77 (78)
Q Consensus         7 ~~S~~l~e~~~-~~llDcG~~~~----~-p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~~l~   77 (78)
                      ..++++++.++ .+|||.|...+    . -.+...-...|.+|++||+|  |+|++..+.+.   ..++|++..|.++.
T Consensus        34 ~~N~~li~~~~~~iLIDt~~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~~---~v~~~~~~~~~~~~  109 (221)
T d1mqoa_          34 PSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKER---GIKAHSTALTAELA  109 (221)
T ss_dssp             EEEEEEEEETTEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHH---TCEEECBHHHHHHH
T ss_pred             ccEEEEEEECCEEEEEeCCCCHHHHHHHHHHHHHhcCCCceEEEECCCCccccCCHHHHhhC---CCceeechhhhhhh
Confidence            34678888888 56899884110    0 01111112459999999999  99999998863   36889988887653

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.15  E-value=2.3e-05  Score=57.87  Aligned_cols=67  Identities=9%  Similarity=-0.063  Sum_probs=45.5

Q ss_pred             CCeEEEEeCC-eEEEeCcCCCC-----CCCC-CCCCCCCccEEEecCCC--Ccchhhhhhhcc---CCcceEEechhhh
Q psy9131           8 RSTVGRECCG-KVFVDSAPEFQ-----PPLS-QLVDFSEVNMILISNYL--SMLALPFITEGT---GFEGVVYATEPTL   74 (78)
Q Consensus         8 ~S~~l~e~~~-~~llDcG~~~~-----~p~~-~~~~~~~iDavliSh~H--H~g~LP~l~~~~---gf~g~Iy~T~~T~   74 (78)
                      .++++++.++ -++||+|+..+     .-.+ ..+..+.|.+||+||+|  |+|+...+.+..   ....+||+.+...
T Consensus       104 sN~~~I~gddG~iVIDtg~s~e~a~~~l~~~~~~l~~kPV~aVI~TH~H~DH~GGa~~~~e~~~~~~~~~~IiA~~~~~  182 (505)
T d2cfua2         104 ANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFM  182 (505)
T ss_dssp             SCEEEEECSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHH
T ss_pred             cceeEEEcCCEEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhHHHHhhhhhhccCCceEEechHHH
Confidence            4788999876 56899996211     1111 22445679999999999  999998886421   2246788876543

>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.43  E-value=0.00011  Score=49.89  Aligned_cols=62  Identities=8%  Similarity=-0.132  Sum_probs=41.6

Q ss_pred             eEEEEeCC---eEEEeCcCCCC-CCCCCCCCCCCccEEEecCCC--CcchhhhhhhccCCcceEEechhhh
Q psy9131          10 TVGRECCG---KVFVDSAPEFQ-PPLSQLVDFSEVNMILISNYL--SMLALPFITEGTGFEGVVYATEPTL   74 (78)
Q Consensus        10 ~~l~e~~~---~~llDcG~~~~-~p~~~~~~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~T~~T~   74 (78)
                      +|++...+   .++||.|-... ...... ...++.+|++||.|  |+++...|.++  |..+||+.....
T Consensus        14 ~Yli~d~~t~~avvIDPg~~~~i~~~l~~-~~~~l~~Il~TH~H~DH~~g~~~l~~~--~~~~v~~~~~~~   81 (254)
T d1xm8a_          14 AYILHDEDTGTVGVVDPSEAEPIIDSLKR-SGRNLTYILNTHHHYDHTGGNLELKDR--YGAKVIGSAMDK   81 (254)
T ss_dssp             EEEEECTTTCCEEEECCSSHHHHHHHHHH-HTCCCCEEECSSCCHHHHTTHHHHHHH--HCCEEEEEGGGG
T ss_pred             EEEEEECCCCEEEEECCCCcHHHHHHHHH-CCCceeEEecccCcccccCchHHHHhh--cCCcEEeccccc
Confidence            78886532   46899982100 000111 12478999999999  99999999975  568898876543

>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.005  Score=41.43  Aligned_cols=50  Identities=6%  Similarity=-0.127  Sum_probs=33.7

Q ss_pred             eEEEEeCC---eEEEeCcCCCCCCCCCCC--CCCCccEEEecCCC--Ccchhhhhhhcc
Q psy9131          10 TVGRECCG---KVFVDSAPEFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGT   61 (78)
Q Consensus        10 ~~l~e~~~---~~llDcG~~~~~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~   61 (78)
                      +|++..+.   .++||-|-.  .+-...+  .--++.+||+||.|  |+++++.|.++.
T Consensus        14 ~Yli~d~~t~~a~vIDP~~~--~~i~~~l~~~~~~l~~Il~TH~H~DHi~g~~~l~~~~   70 (260)
T d1qh5a_          14 MYLVIDDETKEAAIVDPVQP--QKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLE   70 (260)
T ss_dssp             EEEEEETTTTEEEEESCSSH--HHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHS
T ss_pred             EEEEEECCCCEEEEEeCCCC--HHHHHHHHHCCCeEEEEEcCCCChhhhccchhhhccc
Confidence            78887743   367998721  0100000  12468999999999  999999999753

>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.56  E-value=0.0057  Score=40.84  Aligned_cols=56  Identities=11%  Similarity=0.062  Sum_probs=35.5

Q ss_pred             eEEEEeCC-e-EEEeCcCCCCCCCCCCC--CCCCccEEEecCCC--CcchhhhhhhccCCcceEEe
Q psy9131          10 TVGRECCG-K-VFVDSAPEFQPPLSQLV--DFSEVNMILISNYL--SMLALPFITEGTGFEGVVYA   69 (78)
Q Consensus        10 ~~l~e~~~-~-~llDcG~~~~~p~~~~~--~~~~iDavliSh~H--H~g~LP~l~~~~gf~g~Iy~   69 (78)
                      .|++..+. + ++||.|-.  .+....+  .-..+.+||+||.|  |+++++.|.++  |...++.
T Consensus        14 ~YLi~~~~~~avvIDPg~~--~~il~~i~~~~~~l~~Il~TH~H~DHi~g~~~l~~~--~~~~~~~   75 (251)
T d2qeda1          14 IWVLTNDEGRCVIVDPGEA--APVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQH--FPQMTVY   75 (251)
T ss_dssp             EEEEECTTSEEEEECCSCH--HHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHH--CTTCEEE
T ss_pred             EEEEEeCCCeEEEEcCCcc--HHHHHHHHHcCCceeEEEeCCCcccccchhhhHHHh--hhcceec
Confidence            36676543 3 67998831  0111111  23467999999999  99999998875  5544443