Psyllid ID: psy9140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MNMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLKN
Secondary Structure (PSIPRED)
cEEEEEcccEEEEcEEEEEEEccEEEEEEEccccccccEEEEEEEccccccEEEEEcccEEEEcccccEEEEcccccccccEEEEEEEEcccccEEEcccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEcccEEEEccEEEEEEEcccccHcEEEEEEEEcccEEEccccccccEEEEEcccEEEEEEccccccccEEEEEEEEEccccEEEccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mnmgdmssdyeintgntFVLRGNIAVLqcnipaynHNLLLIAWLREGVSEARSIIhsggrysittagalhirdtgmeDSYIRYYCQTThkltgerkisppsqvmVSEIALPLKN
Flexible Loop (DISEMBL)
mnmgdmssdYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIihsggrysittaGALHIRDTGMEDSYIRYYCQTTHkltgerkisppsqvmvseialplkn
Low Complexity Region (SEG)
MNMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLKN
Disordered region (IsUnstruct)
**********EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT**********************
Disordered Region (DISOPRED)
*NMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT*********QVMVSEI*L****
Disordered Region (DISEMBL)
MNMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLKN
Disordered Region (DISPRO)
*NMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.833	0.047	0.346	1e-10
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.833	0.047	0.346	1e-10
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.833	0.047	0.346	1e-10
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.833	0.046	0.316	7e-08
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.833	0.046	0.316	5e-07
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.877	0.048	0.207	0.0004

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 10  YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
           Y +   +   +RGN+AV +C IP+     + +++W ++ VS     + SG R+ IT+ GA
Sbjct: 126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVS-----LVSGSRFLITSTGA 180

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
           L+I+D   ED    Y C T H+ TGE + S  +++ VS+ A
Sbjct: 181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.
Homo sapiens (taxid: 9606)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 10  YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
           Y +   +   +RGN+AV +C IP+     + +++W ++ VS     + SG R+ IT+ GA
Sbjct: 126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVS-----LVSGSRFLITSTGA 180

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
           L+I+D   ED    Y C T H+ TGE + S  +++ VS+ A
Sbjct: 181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 10  YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
           Y +   +   +RGN+AV +C IP+     + +++W ++ VS     + SG R+ IT+ GA
Sbjct: 126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVS-----LVSGSRFLITSTGA 180

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
           L+I+D   ED    Y C T H+ TGE + S  +++ VS+ A
Sbjct: 181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
           Y +   +   +RGN+AV +C IP+     + +++W ++ VS     I    R+ IT+ G 
Sbjct: 127 YTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVS-----ITPENRFFITSHGG 181

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
           L+I D   ED+   Y C T HK +GE + S  +++ V++ A
Sbjct: 182 LYISDVQKEDALSTYRCITQHKYSGETRQSNGARLSVTDPA 222

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
           Y +   +   +RGN+AV +C IP+     + +++W ++ VS     I    R+ IT  G 
Sbjct: 127 YTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVS-----IIPEHRFFITYHGG 181

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
           L+I D   ED+   Y C T HK +GE + S  +++ V++ A
Sbjct: 182 LYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVTDPA 222

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 6   MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSIT 64
           ++  Y+++       RG  A+L+C +P +   L+ +++W+ E        +   G++ + 
Sbjct: 129 VAQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLL 188

Query: 65  TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
             G L I +    D    + C++ H+LT +  +S P+++ +
Sbjct: 189 PTGELLIHNLQESDESQSFRCRSMHRLTRQVVVSSPTRLRI 229

Cell adhesion molecule.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
183987806	1958	Down syndrome cell adhesion molecule iso	0.789	0.045	0.411	1e-13
328723077	1716	PREDICTED: Down syndrome cell adhesion m	0.894	0.059	0.349	4e-13
116007634	2016	down syndrome cell adhesion molecule, is	0.710	0.040	0.414	8e-13
116007660	2017	down syndrome cell adhesion molecule, is	0.710	0.040	0.414	9e-13
116007562	2031	down syndrome cell adhesion molecule, is	0.710	0.039	0.414	9e-13
116007644	2032	down syndrome cell adhesion molecule, is	0.710	0.039	0.414	9e-13
116007662	2031	down syndrome cell adhesion molecule, is	0.710	0.039	0.414	9e-13
116007666	2016	down syndrome cell adhesion molecule, is	0.710	0.040	0.414	9e-13
350419622	1975	PREDICTED: Down syndrome cell adhesion m	0.780	0.045	0.377	1e-12
116007642	2017	down syndrome cell adhesion molecule, is	0.780	0.044	0.4	2e-12

>gi|183987806|gb|ACC65887.1| Down syndrome cell adhesion molecule isoform [Daphnia magna]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 53/90 (58%)

Query: 9   DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
           DYE+   + FVLRGN A+L+C +P+Y  +++ I     G  E        G+Y +  +G 
Sbjct: 121 DYEVRVNDEFVLRGNAALLKCLVPSYVSDVVQIESWTSGQGEVFGGTDWDGKYMVLPSGE 180

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
           LHIRD   ED Y  Y C+T H+LTGE ++S
Sbjct: 181 LHIRDVSPEDGYKSYRCRTKHRLTGETRLS 210

Source: Daphnia magna

Species: Daphnia magna

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723077|ref|XP_001951684.2| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Acyrthosiphon pisum]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 6   MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR----SIIHSGGRY 61
           MS  YE++  N F L+GN+A  +C +P      L+  W +   S       + IH GGRY
Sbjct: 48  MSKSYELSVQNAFALQGNVAEFKCQLPELTSEHLVKTWFKMEDSRMEVGQSTPIHPGGRY 107

Query: 62  SITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
            I+  G L I D   ED++ RY+CQ  +K TG++ +S  ++++V +
Sbjct: 108 VISLDGTLLIHDVVPEDTFDRYFCQVVNKYTGDQLVSQSAKIIVKQ 153

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007634|ref|NP_001036513.1| down syndrome cell adhesion molecule, isoform AH [Drosophila melanogaster] gi|113194618|gb|ABI31064.1| down syndrome cell adhesion molecule, isoform AH [Drosophila melanogaster]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 18  FVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM 76
           +V+RGN AVL+C+IP++  + + + +W+ E  +E R   +  G+Y +  +G LHIR+ G 
Sbjct: 149 YVIRGNAAVLKCSIPSFVADFVRVESWIDEEGTELRPSENYDGKYLVLPSGELHIREVGP 208

Query: 77  EDSYIRYYCQTTHKLTGERKIS 98
           ED Y  Y C+T H+LTGE ++S
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007660|ref|NP_001036526.1| down syndrome cell adhesion molecule, isoform AD [Drosophila melanogaster] gi|113194631|gb|ABI31077.1| down syndrome cell adhesion molecule, isoform AD [Drosophila melanogaster]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 18  FVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM 76
           +V+RGN AVL+C+IP++  + + + +W+ E  +E R   +  G+Y +  +G LHIR+ G 
Sbjct: 149 YVIRGNAAVLKCSIPSFVADFVRVESWIDEEGTELRPSENYDGKYLVLPSGELHIREVGP 208

Query: 77  EDSYIRYYCQTTHKLTGERKIS 98
           ED Y  Y C+T H+LTGE ++S
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007562|ref|NP_001036477.1| down syndrome cell adhesion molecule, isoform AC [Drosophila melanogaster] gi|113194582|gb|ABI31028.1| down syndrome cell adhesion molecule, isoform AC [Drosophila melanogaster]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 18  FVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM 76
           +V+RGN AVL+C+IP++  + + + +W+ E  +E R   +  G+Y +  +G LHIR+ G 
Sbjct: 149 YVIRGNAAVLKCSIPSFVADFVRVESWIDEEGTELRPSENYDGKYLVLPSGELHIREVGP 208

Query: 77  EDSYIRYYCQTTHKLTGERKIS 98
           ED Y  Y C+T H+LTGE ++S
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007644|ref|NP_001036518.1| down syndrome cell adhesion molecule, isoform AG [Drosophila melanogaster] gi|113194623|gb|ABI31069.1| down syndrome cell adhesion molecule, isoform AG [Drosophila melanogaster]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 18  FVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM 76
           +V+RGN AVL+C+IP++  + + + +W+ E  +E R   +  G+Y +  +G LHIR+ G 
Sbjct: 149 YVIRGNAAVLKCSIPSFVADFVRVESWIDEEGTELRPSENYDGKYLVLPSGELHIREVGP 208

Query: 77  EDSYIRYYCQTTHKLTGERKIS 98
           ED Y  Y C+T H+LTGE ++S
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007662|ref|NP_001036527.1| down syndrome cell adhesion molecule, isoform AF [Drosophila melanogaster] gi|113194632|gb|ABI31078.1| down syndrome cell adhesion molecule, isoform AF [Drosophila melanogaster]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 18  FVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM 76
           +V+RGN AVL+C+IP++  + + + +W+ E  +E R   +  G+Y +  +G LHIR+ G 
Sbjct: 149 YVIRGNAAVLKCSIPSFVADFVRVESWIDEEGTELRPSENYDGKYLVLPSGELHIREVGP 208

Query: 77  EDSYIRYYCQTTHKLTGERKIS 98
           ED Y  Y C+T H+LTGE ++S
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007666|ref|NP_001036529.1| down syndrome cell adhesion molecule, isoform AE [Drosophila melanogaster] gi|113194634|gb|ABI31080.1| down syndrome cell adhesion molecule, isoform AE [Drosophila melanogaster]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 18  FVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM 76
           +V+RGN AVL+C+IP++  + + + +W+ E  +E R   +  G+Y +  +G LHIR+ G 
Sbjct: 149 YVIRGNAAVLKCSIPSFVADFVRVESWIDEEGTELRPSENYDGKYLVLPSGELHIREVGP 208

Query: 77  EDSYIRYYCQTTHKLTGERKIS 98
           ED Y  Y C+T H+LTGE ++S
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419622|ref|XP_003492247.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus impatiens]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGA 68
           Y +N  +  VLRGN A+++C+IP++    + + +W+ +  +E        G+Y +  +G 
Sbjct: 124 YAVNVMDEHVLRGNAAIIKCHIPSFVAEFVEVDSWIEDEKTEIYPSTDYDGKYLVLPSGE 183

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
           LHIRD G ED Y  Y C+T H+LTGE ++S
Sbjct: 184 LHIRDVGPEDGYKTYQCRTKHRLTGETRLS 213

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007642|ref|NP_001036517.1| down syndrome cell adhesion molecule, isoform Z [Drosophila melanogaster] gi|113194622|gb|ABI31068.1| down syndrome cell adhesion molecule, isoform Z [Drosophila melanogaster]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGA 68
           YE    + +V+RGN AVL+C IP++  + L + AW+    +E        G+Y +  +G 
Sbjct: 141 YEAEVVSEYVIRGNTAVLKCTIPSFVADFLRVEAWVASDGTEYAPEEDFDGKYLVLPSGE 200

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
           LHIR+ G ED Y  Y C+T H+LTGE ++S
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLS 230

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.912	0.054	0.330	1.9e-12
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.859	0.048	0.34	1.5e-11
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.833	0.047	0.346	9.2e-10
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.833	0.047	0.346	1.2e-09
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.833	0.047	0.346	1.2e-09
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.833	0.047	0.346	3.9e-09
ZFIN|ZDB-GENE-050310-7	2024	dscama "Down syndrome cell adh	0.815	0.045	0.323	8.4e-09
UNIPROTKB|E1BZF3	1870	E1BZF3 "Uncharacterized protei	0.815	0.049	0.333	3.8e-07
MGI|MGI:2150309	2053	Dscaml1 "Down syndrome cell ad	0.833	0.046	0.316	7e-07
RGD|1304887	2111	Dscaml1 "Down syndrome cell ad	0.833	0.045	0.316	7.2e-07

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/106 (33%), Positives = 64/106 (60%)

Query:     4 GDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYS 62
             G ++  Y +   + +V+ GN AVL+C +P+Y    +L+ AW+++           GG+Y+
Sbjct:   123 GVVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query:    63 ITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISP-PSQVMVSE 107
             + + G L+I + G  D+Y  Y C+T ++LTGE +IS  P +++V+E
Sbjct:   183 VLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTE 228

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 34/100 (34%), Positives = 61/100 (61%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSIIHSGGRYSITTAGA 68
             YE      +V+RGN AVL+C+IP++  + + + +W+ +  +      +  G+Y +  +G 
Sbjct:   141 YEAEIMTEYVIRGNAAVLKCSIPSFVADFVRVESWIDDEGNVLSFSDNYDGKYLVLPSGE 200

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS-QVMVSE 107
             LHIR+ G ED Y  Y C+T H+LTGE ++S    +++++E
Sbjct:   201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 9.2e-10, P = 9.2e-10
 Identities = 35/101 (34%), Positives = 58/101 (57%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RGN+AV +C IP+     + +++W ++ VS     + SG R+ IT+ GA
Sbjct:   126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVS-----LVSGSRFLITSTGA 180

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
             L+I+D   ED    Y C T H+ TGE + S  +++ VS+ A
Sbjct:   181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 35/101 (34%), Positives = 58/101 (57%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RGN+AV +C IP+     + +++W ++ VS     + SG R+ IT+ GA
Sbjct:   126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVS-----LVSGSRFLITSTGA 180

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
             L+I+D   ED    Y C T H+ TGE + S  +++ VS+ A
Sbjct:   181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 35/101 (34%), Positives = 58/101 (57%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RGN+AV +C IP+     + +++W ++ VS     + SG R+ IT+ GA
Sbjct:   126 YTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVS-----LVSGSRFLITSTGA 180

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
             L+I+D   ED    Y C T H+ TGE + S  +++ VS+ A
Sbjct:   181 LYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 221

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 35/101 (34%), Positives = 57/101 (56%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RGN+AV +C IP+     + +++W ++ VS     + SG R+ IT+ GA
Sbjct:   112 YTVRVEDQKAMRGNVAVFKCIIPSSVEAYITVVSWEKDTVS-----LVSGPRFLITSTGA 166

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
             L+I D   ED    Y C T H+ TGE + S  +++ VS+ A
Sbjct:   167 LYILDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPA 207

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

ZFIN|ZDB-GENE-050310-7 dscama "Down syndrome cell adhesion molecule a" [Danio rerio (taxid:7955)]

 Score = 148 (57.2 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 32/99 (32%), Positives = 54/99 (54%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RG++AV +C IP+   N + +++W R+ V      + SG R+ IT+ GA
Sbjct:   126 YTVRVADQTAMRGSVAVFKCIIPSSVENYITVVSWERDTVP-----LVSGARFLITSTGA 180

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
             L+I D   ED    Y C T H+ T E + S  +++ V +
Sbjct:   181 LYILDVQKEDELFNYRCMTRHRYTSETRQSNSARLFVPD 219

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

UNIPROTKB|E1BZF3 E1BZF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 33/99 (33%), Positives = 55/99 (55%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RGN+AV +C IP+     + +++W ++ VS    II    R+ IT+ G 
Sbjct:   129 YTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVS----IIPEN-RFFITSYGG 183

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
             L+I D   ED+   Y C T HK +GE + S  +++ VS+
Sbjct:   184 LYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVSD 222

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

MGI|MGI:2150309 Dscaml1 "Down syndrome cell adhesion molecule like 1" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 32/101 (31%), Positives = 55/101 (54%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RGN+AV +C IP+     + +++W ++ VS     I    R+ IT+ G 
Sbjct:   127 YTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVS-----ITPENRFFITSHGG 181

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
             L+I D   ED+   Y C T HK +GE + S  +++ V++ A
Sbjct:   182 LYISDVQKEDALSTYRCITQHKYSGETRQSNGARLSVTDPA 222

GO:0005886 "plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO;ISA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016338 "calcium-independent cell-cell adhesion" evidence=ISA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|1304887 Dscaml1 "Down syndrome cell adhesion molecule-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 32/101 (31%), Positives = 55/101 (54%)

Query:    10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA 68
             Y +   +   +RGN+AV +C IP+     + +++W ++ VS     I    R+ IT+ G 
Sbjct:   185 YTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVS-----ITPENRFFITSHGG 239

Query:    69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA 109
             L+I D   ED+   Y C T HK +GE + S  +++ V++ A
Sbjct:   240 LYISDVQKEDALSTYRCITQHKYSGETRQSNGARLSVTDPA 280

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISO

GO:0007162 "negative regulation of cell adhesion" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA;ISO

GO:0070593 "dendrite self-avoidance" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.8
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.79
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.77
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.77
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.77
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.76
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.75
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.75
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.74
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.74
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.73
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.73
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.73
KOG3513|consensus	1051		99.72
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.72
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.71
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.71
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.71
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.7
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.7
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.7
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.69
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.68
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.68
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.68
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.68
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.68
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.68
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.68
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.67
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.67
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.66
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.66
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.65
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.65
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.65
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.64
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.64
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.64
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.64
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.64
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.63
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.63
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.63
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.63
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.63
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.62
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.62
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.62
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.61
KOG4222|consensus	1281		99.6
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.6
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.6
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.59
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.59
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.58
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.58
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.58
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.58
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.57
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.57
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.57
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.55
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.54
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.54
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.54
KOG4194|consensus	873		99.52
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.52
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.51
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.51
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.51
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.5
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.5
KOG4221|consensus	1381		99.5
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.49
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.49
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.48
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.48
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.47
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.46
KOG4221|consensus	1381		99.45
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.45
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.44
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.44
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.44
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.43
KOG3513|consensus	1051		99.43
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.42
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.41
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.4
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.36
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.35
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.32
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.31
PHA02785	326	IL-beta-binding protein; Provisional	99.31
smart00409	86	IG Immunoglobulin.	99.3
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.3
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.3
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.29
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.26
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.24
PHA02826	227	IL-1 receptor-like protein; Provisional	99.24
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.23
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.23
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.19
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.16
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.15
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.14
PHA02785	326	IL-beta-binding protein; Provisional	99.13
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.12
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.12
PHA02826	227	IL-1 receptor-like protein; Provisional	99.1
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.09
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.08
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.08
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.05
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	99.04
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.04
KOG4194|consensus	873		99.04
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	99.01
KOG4222|consensus	1281		99.0
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.99
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.98
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.98
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.95
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.95
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.92
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.89
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.88
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.87
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.86
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.85
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.84
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.83
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.82
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.82
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.82
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.82
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.79
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.75
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.74
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.73
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.72
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.66
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.65
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.65
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.63
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.61
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.58
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.55
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.53
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.5
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.5
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.45
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.43
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.39
smart00407	75	IGc1 Immunoglobulin C-Type.	98.39
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.38
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.37
PHA03376	221	BARF1; Provisional	98.36
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.34
smart00406	81	IGv Immunoglobulin V-Type.	98.33
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.32
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.31
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.31
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.3
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.28
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.25
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.24
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.23
KOG1480|consensus	909		98.18
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.18
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	98.16
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.15
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.08
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.03
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.01
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.97
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.72
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.67
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.27
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.26
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.21
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.2
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.08
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.7
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.56
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.4
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.06
PHA02865	338	MHC-like TNF binding protein; Provisional	96.03
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	95.41
KOG4597|consensus	560		95.39
PHA02633	63	hypothetical protein; Provisional	95.24
PHA02982	251	hypothetical protein; Provisional	94.71
PHA03042	286	CD47-like protein; Provisional	92.72
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.36
KOG3515|consensus	741		92.2
KOG3515|consensus	741		91.47
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	88.66
PHA02914	500	Immunoglobulin-like domain protein; Provisional	87.13
PHA03052	69	Hypothetical protein; Provisional	86.1
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	84.81
KOG3611|consensus	737		83.05
PHA03282	540	envelope glycoprotein E; Provisional	82.1

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.80  E-value=2e-19  Score=113.24  Aligned_cols=73  Identities=19%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      |.+|+|+|.+.+.+.|  .++|+|++..+     ..+.||.+.++|+|.|.+++.+|+| .|+|.|.|.++.   .++.+
T Consensus         1 G~~~~l~C~~~g~P~p--~v~W~k~~~~l-----~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~A~N~~G~---~~~~~   69 (73)
T cd05852           1 GGRVIIECKPKAAPKP--KFSWSKGTELL-----VNNSRISIWDDGSLEILNITKLDEG-SYTCFAENNRGK---ANSTG   69 (73)
T ss_pred             CCeEEEEEecceeCCC--EEEEEeCCEec-----ccCCCEEEcCCCEEEECcCChhHCE-EEEEEEECCCCc---eeEEE
Confidence            7899999999887655  89999998853     4568999999999999999999995 999999999875   45566


Q ss_pred             EEEE
Q psy9140         102 QVMV  105 (114)
Q Consensus       102 ~L~V  105 (114)
                      .|.|
T Consensus        70 ~l~~   73 (73)
T cd05852          70 VLSV   73 (73)
T ss_pred             EEEC
Confidence            7654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.79  E-value=9.8e-19  Score=113.22  Aligned_cols=87  Identities=20%  Similarity=0.292  Sum_probs=72.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|.+.++|..+.+|+.+.|.|.+.+.+.|  .++|+|++..+     ..+.|+.+ .++.|.|.+++.+|+| .|+|.|
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P--~v~W~k~~~~~-----~~~~~~~~-~~~~L~I~~v~~~D~G-~Y~C~A   72 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNPVP--VIRWRKILEPM-----PATAEISM-SGAVLKIFNIQPEDEG-TYECEA   72 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccCCC--EEEEEECCcCC-----CCCCEEec-CCCEEEECcCChhhCE-EEEEEE
Confidence            678999999999999999999999887665  89999998743     33456554 4678999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.++.   .+..++|.|+
T Consensus        73 ~N~~G~---~~~~~~l~V~   88 (88)
T cd05851          73 ENIKGK---DKHQARVYVQ   88 (88)
T ss_pred             EcCCCc---eEEEEEEEEC
Confidence            999875   4556788774

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.77  E-value=3.6e-18  Score=112.90  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...|++..+.+|+++.|.|.+.+.+++  .+.|+||+..+     ..+.||.+..   ...|.|.+++.+|+| .|+
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p--~v~W~kdg~~l-----~~~~~~~~~~~~~~s~L~I~~~~~~D~G-~Yt   72 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI--TCTWMKFRKQI-----QEGEGIKIENTENSSKLTITEGQQEHCG-CYT   72 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCC--ceEEEECCEEe-----cCCCcEEEEecCCeeEEEECCCChhhCE-EEE
Confidence            468889999999999999999999876544  89999999854     4566787763   557999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.|.++.   .+..++|.|.+++.
T Consensus        73 c~a~N~~G~---~~~~~~l~V~~~P~   95 (98)
T cd05762          73 LEVENKLGS---RQAQVNLTVVDKPD   95 (98)
T ss_pred             EEEEcCCCc---eeEEEEEEEecCCC
Confidence            999999976   46688999987764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.77  E-value=1.8e-18  Score=108.14  Aligned_cols=74  Identities=23%  Similarity=0.445  Sum_probs=61.9

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP  100 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~  100 (114)
                      +|++|.|+|.+.+.+.|  .++|+|++..+     ..+.|+.+.++|.|.|.+|+.+|+| .|+|.|.|.++.   .+..
T Consensus         1 eG~~v~l~C~~~g~P~p--~i~W~k~g~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~G~---~~~~   69 (74)
T cd05745           1 EGQTVDFLCEAQGYPQP--VIAWTKGGSQL-----SVDRRHLVLSSGTLRISRVALHDQG-QYECQAVNIVGS---QRTV   69 (74)
T ss_pred             CCCeEEEEeECCEecCC--EEEEEECCEEC-----CCCCCeEEccCCeEEEeeCCHHhCE-EEEEEEEeCCCc---eeEE
Confidence            69999999999887655  89999999853     3467888888999999999999995 999999999875   3446


Q ss_pred             eEEEE
Q psy9140         101 SQVMV  105 (114)
Q Consensus       101 a~L~V  105 (114)
                      +.|.|
T Consensus        70 ~~L~V   74 (74)
T cd05745          70 AQLTV   74 (74)
T ss_pred             EEEeC
Confidence            66654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.77  E-value=6.5e-18  Score=107.17  Aligned_cols=85  Identities=24%  Similarity=0.388  Sum_probs=69.4

Q ss_pred             eccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          12 INTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ++|++..+.+|++|.|.|.+ .+.+.+  .+.|+|++..+    ...+.|+.+..+|.|.|.+++.+|+| .|+|.|.|.
T Consensus         1 ~~p~~~~~~~G~~v~l~C~~~~g~p~p--~i~W~k~g~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~   73 (86)
T cd05724           1 VEPSDTQVAVGEMAVLECSPPRGHPEP--TVSWRKDGQPL----NLDNERVRIVDDGNLLIAEARKSDEG-TYKCVATNM   73 (86)
T ss_pred             CCCccEEEeCCCCEEEEEECCCCCCCC--EEEEEECCEEC----CCCCCCEEEccCCEEEEeECCcccCE-EEEEEEEec
Confidence            46889999999999999997 454333  89999999864    23367888888899999999999995 999999999


Q ss_pred             cCCcEEeCCCeEEEE
Q psy9140          91 LTGERKISPPSQVMV  105 (114)
Q Consensus        91 l~~~~~~s~~a~L~V  105 (114)
                      .+..  .|..+.|.|
T Consensus        74 ~G~~--~s~~~~l~V   86 (86)
T cd05724          74 VGER--ESAAARLSV   86 (86)
T ss_pred             cCce--eeeeEEEEC
Confidence            8653  566777765

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.76  E-value=3.8e-18  Score=110.97  Aligned_cols=81  Identities=19%  Similarity=0.362  Sum_probs=64.7

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE----ccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI----TTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS   98 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v----~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s   98 (114)
                      ++|+|+|.+.+.+..++.+.|+|||+.|.+  ...+.||.+    ..+|.|.|+|++.+|+| .|+|.|+|.++.   .+
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~--~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG-~YtC~a~n~~~~---~~   74 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDF--QKDGDHFERVGGQDSAGDLMIRSIQLKHAG-KYVCMVQTSVDK---LS   74 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcc--cCCCccEEEeccCCCCCcEEEecCCHHHCE-EEEEEEEcccCc---eE
Confidence            479999999554333338999999997622  134568877    35789999999999995 999999999986   68


Q ss_pred             CCeEEEEeccc
Q psy9140          99 PPSQVMVSEIA  109 (114)
Q Consensus        99 ~~a~L~V~~~~  109 (114)
                      ..|.|.|+.|+
T Consensus        75 a~a~L~V~~pP   85 (85)
T cd05853          75 AAADLIVRGPP   85 (85)
T ss_pred             EEEEEEEecCC
Confidence            89999999885

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.75  E-value=8.7e-18  Score=109.41  Aligned_cols=88  Identities=23%  Similarity=0.356  Sum_probs=71.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-----CCCCCCeeeE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-----GMEDSYIRYY   84 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-----~~~D~gg~Y~   84 (114)
                      |...|++..+.+|+++.|.|.+.+.+.+  .+.|+||+..+   ....+.|+.+.++|.|.|.++     +.+|+| .|+
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p--~i~W~k~g~~l---~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G-~Y~   75 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPP--KIEWKKDGVLL---NLVSDERRQQLPNGSLLITSVVHSKHNKPDEG-FYQ   75 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCC--EEEEEECCeEC---ccccCcceEEccCCeEEEeeeeccCCCCCcCE-EEE
Confidence            7889999999999999999999876544  89999999865   223345688888999999998     578985 999


Q ss_pred             EEEeec-cCCcEEeCCCeEEEE
Q psy9140          85 CQTTHK-LTGERKISPPSQVMV  105 (114)
Q Consensus        85 C~a~n~-l~~~~~~s~~a~L~V  105 (114)
                      |.|.|. ++..  .|..++|.|
T Consensus        76 C~a~N~~~G~~--~s~~~~l~v   95 (95)
T cd05722          76 CVAQNDSLGSI--VSRTARLTV   95 (95)
T ss_pred             EEEECCccCcE--EEeeeEEeC
Confidence            999999 8653  466777765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.75  E-value=4.1e-18  Score=109.29  Aligned_cols=85  Identities=22%  Similarity=0.336  Sum_probs=70.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +|...|++..+.+|++|.|.|.+.+.+.|  .+.|+|++..+     ..+.|+.+. +|.|.|.+++.+|+| .|+|.|.
T Consensus         1 ~~~~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~k~g~~~-----~~~~~~~~~-~~~L~i~~~~~~D~G-~Y~C~a~   71 (85)
T cd05728           1 EWLKVISDTEADIGSSLRWECKASGNPRP--AYRWLKNGQPL-----ASENRIEVE-AGDLRITKLSLSDSG-MYQCVAE   71 (85)
T ss_pred             CccccCCccEEcCCCcEEEEEEeeEeCCC--EEEEEECCEEC-----CCCCeEEEe-CCEEEEeeCCHHHCE-EEEEEEE
Confidence            47789999999999999999999887655  89999999853     456677764 799999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEE
Q psy9140          89 HKLTGERKISPPSQVMV  105 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V  105 (114)
                      |.++.   .+..+.|.|
T Consensus        72 N~~G~---~~~~~~l~V   85 (85)
T cd05728          72 NKHGT---IYASAELAV   85 (85)
T ss_pred             CCCCe---EEEEEEEEC
Confidence            99874   455666654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.74  E-value=8.3e-18  Score=105.33  Aligned_cols=74  Identities=24%  Similarity=0.429  Sum_probs=62.6

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEE
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVM  104 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~  104 (114)
                      |+|.|.+.+++.|  .++|+|++..+   ....+.||.+.++|.|.|.+++.+|+| .|+|.|.|.++.  ..|..++|.
T Consensus         1 a~l~C~~~G~P~p--~v~W~k~~~~~---~~~~~~~~~~~~~g~L~i~~~~~~D~G-~Y~C~a~N~~G~--~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDP--EITWFKDFLPV---DTTSNGRIKQLRSGALQIENSEESDQG-KYECVATNSAGT--RYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCC--EEEEEECCEEC---ccCCCCCEEEcCCcEEEECCCChhhCE-EEEEEEECCCCc--eEcccEEEE
Confidence            6899999887655  89999998854   222578999999999999999999995 999999999876  378899998


Q ss_pred             Ee
Q psy9140         105 VS  106 (114)
Q Consensus       105 V~  106 (114)
                      |+
T Consensus        73 v~   74 (74)
T cd05738          73 VR   74 (74)
T ss_pred             EC
Confidence            85

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.74  E-value=5.2e-17  Score=104.58  Aligned_cols=93  Identities=19%  Similarity=0.315  Sum_probs=71.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-----CCCCCCee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-----GMEDSYIR   82 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-----~~~D~gg~   82 (114)
                      +.|...|++..+.+|+++.|.|.+.+++.+  .++|+||+..+.........+..+.++|.|.+..+     +.+|+| .
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G-~   78 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTP--TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG-V   78 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCCCC--EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE-E
Confidence            568899999999999999999999887555  89999999865221112345666778888765543     789995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEE
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      |+|.|.|.++..  .|..+.|.|
T Consensus        79 Y~C~a~N~~G~~--~s~~~~l~v   99 (100)
T cd07693          79 YVCVAHNSLGEA--VSRNASLEV   99 (100)
T ss_pred             EEEEEEccccce--ecceEEEEe
Confidence            999999998753  566888876

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.73  E-value=2.4e-17  Score=105.83  Aligned_cols=86  Identities=20%  Similarity=0.275  Sum_probs=69.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .+...|++..+.+|.+|.|.|.+.+.+.+  .++|+|++..+     ....++. ..+|.|.|.+|+.+|+| .|+|.|.
T Consensus         3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p--~v~W~k~~~~~-----~~~~~~~-~~~~~L~i~~v~~~D~G-~Y~C~a~   73 (88)
T cd04968           3 IIVVFPKDTYALKGQNVTLECFALGNPVP--QIKWRKVDGSM-----PSSAEIS-MSGAVLKIPNIQFEDEG-TYECEAE   73 (88)
T ss_pred             cEEECCCceEEeCCCcEEEEEEeeEeCCC--EEEEEECCCcC-----CCccEEE-EeCCEEEECCCCcccCE-EEEEEEE
Confidence            45678999999999999999999876555  89999988753     2233443 56899999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEe
Q psy9140          89 HKLTGERKISPPSQVMVS  106 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~  106 (114)
                      |.++.   .+..++|.|.
T Consensus        74 N~~G~---~~~~~~l~V~   88 (88)
T cd04968          74 NIKGK---DTHQGRIYVQ   88 (88)
T ss_pred             ECCCc---EEEEEEEEEC
Confidence            99875   4557788763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.73  E-value=3.8e-17  Score=107.18  Aligned_cols=91  Identities=22%  Similarity=0.349  Sum_probs=67.6

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y   83 (114)
                      |....+++..+.+|.+|.|.|.+.+.+.|  .++|+|++  ..+.......++||.+..   ++.|.|.+|+.+|+| .|
T Consensus         3 p~i~~~~~~~~~~G~~v~l~C~~~G~P~p--~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G-~Y   79 (98)
T cd05870           3 PHIIQLKNETTVENGAATLSCKAEGEPIP--EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG-RY   79 (98)
T ss_pred             CEEEeeccEEEcCCCcEEEEEecccCCCC--eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE-EE
Confidence            44467899999999999999999887555  89999953  221100112357898864   358999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEE
Q psy9140          84 YCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      +|.|.|.++.   .+..+.|.|
T Consensus        80 ~C~A~N~~G~---~~~~~~l~~   98 (98)
T cd05870          80 DCEAASRIGG---HQKSMYLDI   98 (98)
T ss_pred             EEEEeccCCc---ceeEEEEeC
Confidence            9999999975   344556653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.73  E-value=2.9e-17  Score=108.51  Aligned_cols=89  Identities=18%  Similarity=0.335  Sum_probs=67.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEccC----CcEEEeecCCCCCCeee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSITTA----GALHIRDTGMEDSYIRY   83 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~~~----G~L~I~~v~~~D~gg~Y   83 (114)
                      .-++.|.+..+.+|.+|.|.|.+.+.+.++ .++|+| ++..+    ...+.||.+..+    +.|.|.+++.+|+| .|
T Consensus         2 ~~~~~p~~~~v~~G~~v~l~C~v~G~P~~p-~i~W~~~~g~~l----~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G-~Y   75 (96)
T cd05865           2 QVDIVPSQGEISVGESKFFLCQVAGEAKDK-DISWFSPNGEKL----TPNQQRISVVRNDDYSSTLTIYNANIDDAG-IY   75 (96)
T ss_pred             cEEEeCCccEECCCCeEEEEEEEeCCCCCC-EEEEECCCCcCc----cccCCeEEEEeCCCCceEEEEeccChhhCE-EE
Confidence            346789999999999999999998865322 899998 66532    122557776533    58999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEE
Q psy9140          84 YCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      +|.|.|..+++  .+..++|.|
T Consensus        76 tC~A~N~~~g~--~~~s~~l~v   95 (96)
T cd05865          76 KCVVSNEDEGE--SEATVNVKI   95 (96)
T ss_pred             EEEEEcCCCCc--EEEEEEEEE
Confidence            99999997553  444566655

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>KOG3513|consensus

Probab=99.72  E-value=1.8e-17  Score=144.37  Aligned_cols=96  Identities=20%  Similarity=0.385  Sum_probs=85.8

Q ss_pred             ccceeecccee--EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           7 SSDYEINTGNT--FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         7 ~~~~~v~~~d~--~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      .+.|...|...  .+..|.+|+|.|.+.+++++  +++|.|+++.     +..++||.++++|+|.|.|++.+|+| .|+
T Consensus       424 ~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p--~~~W~k~~~~-----~~~~~r~~i~edGtL~I~n~t~~DaG-~Yt  495 (1051)
T KOG3513|consen  424 APVFPLNPVERKVMAVVGGTVTIDCKPFASPKP--KVSWLKGGEK-----LLQSGRIRILEDGTLEISNVTRSDAG-KYT  495 (1051)
T ss_pred             CCCCCCCccceEEEEEeCCeEEEeeccCCCCcc--eEEEEcCCcc-----cccCceEEECCCCcEEecccCcccCc-EEE
Confidence            36788888887  79999999999999887666  8999999983     46899999999999999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALPLK  113 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~~  113 (114)
                      |.|.|.++.   +.+.++|.|+++++|..
T Consensus       496 C~A~N~~G~---a~~~~~L~Vkd~tri~~  521 (1051)
T KOG3513|consen  496 CVAENKLGK---AESTGNLIVKDATRITL  521 (1051)
T ss_pred             EEEEcccCc---cceEEEEEEecCceEEe
Confidence            999999986   68899999999999863

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.72  E-value=5.1e-17  Score=104.94  Aligned_cols=82  Identities=26%  Similarity=0.425  Sum_probs=66.2

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeee-e--eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-S--IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS   98 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-~--~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s   98 (114)
                      |.+|.|+|.+.+.+.|  .+.|+|++..++. +  ......||.+.++|.|.|.+++.+|+| .|+|.|.|..+.   .+
T Consensus         1 G~~v~L~C~~~g~P~p--~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~   74 (90)
T cd05726           1 GRTVTFQCEATGNPQP--AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG-YYICQTLNVAGS---IL   74 (90)
T ss_pred             CCEEEEEEECCccCCC--EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCE-EEEEEEEcCCCc---eE
Confidence            7899999999876555  8999999875421 1  123467999998999999999999995 999999999875   56


Q ss_pred             CCeEEEEeccc
Q psy9140          99 PPSQVMVSEIA  109 (114)
Q Consensus        99 ~~a~L~V~~~~  109 (114)
                      ..+.|.|+++.
T Consensus        75 ~~~~l~V~~~~   85 (90)
T cd05726          75 TKAYLEVTDVI   85 (90)
T ss_pred             EEEEEEEeecc
Confidence            67999998753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.71  E-value=5.6e-17  Score=107.64  Aligned_cols=86  Identities=21%  Similarity=0.269  Sum_probs=67.8

Q ss_pred             ceeec-cceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           9 DYEIN-TGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         9 ~~~v~-~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .|.-+ .++..|.+|+.++|.|.. .+++++  .+.|.+++...    +..++|+.+.++|+|+|++|+.+|.|..|.|.
T Consensus         4 ~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P--~i~W~~~~~~~----i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~   77 (95)
T cd05845           4 KWPKEKIRPVEVEEGDSVVLPCNPPKSAVPL--RIYWMNSDLLH----ITQDERVSMGQNGNLYFANVEEQDSHPDYICH   77 (95)
T ss_pred             cCCccccceeEEecCCCEEEEecCCCCCCCC--EEEEECCCCcc----ccccccEEECCCceEEEEEEehhhCCCCeEEE
Confidence            34433 477889999999999985 555444  89999887542    34689999999999999999999995479999


Q ss_pred             EeeccCCcEEeCCC
Q psy9140          87 TTHKLTGERKISPP  100 (114)
Q Consensus        87 a~n~l~~~~~~s~~  100 (114)
                      |.|..++..+.+.+
T Consensus        78 a~~~~~~~~~~~~p   91 (95)
T cd05845          78 AHFPGLRTIVQKEP   91 (95)
T ss_pred             EEcccccceEecCC
Confidence            99998776555543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.71  E-value=6.7e-17  Score=104.77  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=68.0

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~   82 (114)
                      +.+.|...|++..+.+|+++.|.|.+.+++.+  .+.|+|++..+     ..+.||.+...   +.|.|.+++.+|+| .
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~   73 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAP--TVTWMREGQII-----VSSQRHQITSTEYKSTFEISKVQMSDEG-N   73 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCC--EEEEEECCEEC-----CCCCcEEEEEcCCeeEEEECCCCcccCE-e
Confidence            45678889999999999999999999887655  89999998753     45678888653   58999999999995 9


Q ss_pred             eEEEEeeccCC
Q psy9140          83 YYCQTTHKLTG   93 (114)
Q Consensus        83 Y~C~a~n~l~~   93 (114)
                      |+|.|.|.++.
T Consensus        74 Y~C~a~N~~G~   84 (92)
T cd05747          74 YTVVVENSEGK   84 (92)
T ss_pred             EEEEEEcCCCC
Confidence            99999999864

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.71  E-value=5.2e-17  Score=101.07  Aligned_cols=73  Identities=19%  Similarity=0.322  Sum_probs=60.8

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      |.++.|.|.+.+.+.+  .++|+|++..+     ..+.|+.+.++|.|.|.+|+.+|+| .|+|.|.|.++.   .+..+
T Consensus         1 G~~v~L~C~~~g~P~p--~v~W~k~~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~G~---~~~~~   69 (73)
T cd04969           1 GGDVIIECKPKAAPKP--TISWSKGTELL-----TNSSRICIWPDGSLEILNVTKSDEG-KYTCFAENFFGK---ANSTG   69 (73)
T ss_pred             CCeEEEEEeeeEcCCC--EEEEEECCEEc-----ccCCCEEECCCCeEEEccCChhHCE-EEEEEEECCCCc---eEEEE
Confidence            7899999999775444  89999999853     4678999999999999999999995 999999999875   35566


Q ss_pred             EEEE
Q psy9140         102 QVMV  105 (114)
Q Consensus       102 ~L~V  105 (114)
                      .|.|
T Consensus        70 ~l~V   73 (73)
T cd04969          70 SLSV   73 (73)
T ss_pred             EEEC
Confidence            6654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.70  E-value=1.4e-16  Score=104.28  Aligned_cols=88  Identities=19%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             cceeeccceeEEEeC---CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeee
Q psy9140           8 SDYEINTGNTFVLRG---NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G---~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y   83 (114)
                      +.|..+|++..+.+|   ++|.|.|.+.+.+.+  .++|+|++..+   ....+.||.+. +|+|.|.++. .+|+| .|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p--~i~W~~~g~~l---~~~~~~~~~~~-~g~L~I~~~~~~~D~G-~Y   74 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPA--TYRWKMNGTEI---KFAPESRYTLV-AGNLVINNPQKARDAG-SY   74 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCC--EEEEEECCEEC---ccCCCceEEEE-CCeEEEccCCccCcCE-EE
Confidence            568899999988777   589999999876554  89999999864   22335677664 7999999976 59994 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEE
Q psy9140          84 YCQTTHKLTGERKISPPSQVM  104 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~  104 (114)
                      +|.|.|.++..  .|..|+|.
T Consensus        75 ~C~A~N~~G~~--~s~~a~l~   93 (94)
T cd05850          75 QCLAINRCGTV--VSREANLR   93 (94)
T ss_pred             EEEEEcCcCcE--EEEEEEEe
Confidence            99999998753  45566654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.70  E-value=1.9e-16  Score=103.71  Aligned_cols=87  Identities=23%  Similarity=0.380  Sum_probs=66.8

Q ss_pred             cceeeccceeEEE---eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeee
Q psy9140           8 SDYEINTGNTFVL---RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d~~v~---~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y   83 (114)
                      +.|...|.+..+.   +|+++.|.|.+.+.+.|  .++|+||+..+   ....+.||.+ .+|.|.|.++. .+|+| .|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P--~i~W~k~g~~l---~~~~~~~~~~-~~g~L~i~~~~~~~D~G-~Y   74 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVP--TYRWLRNGTEI---DTESDYRYSL-IDGNLIISNPSEVKDSG-RY   74 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCC--EEEEEECCeEC---ccCCCceEEe-eCCeEEEccCCccCcCE-EE
Confidence            5688899998765   47899999999887655  89999999864   1223456655 47999999985 69995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEE
Q psy9140          84 YCQTTHKLTGERKISPPSQV  103 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L  103 (114)
                      +|.|.|.++..  .|..+.|
T Consensus        75 ~C~A~N~~G~~--~S~~~~l   92 (94)
T cd05848          75 QCLATNSIGSI--LSREALL   92 (94)
T ss_pred             EEEEEcCCCeE--EeccEEE
Confidence            99999998753  4555554

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.70  E-value=1.2e-16  Score=106.27  Aligned_cols=90  Identities=21%  Similarity=0.294  Sum_probs=67.3

Q ss_pred             cceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +.|..++.+. .|.+|..|+|+|..|...++ +.+.|.|++..+..  ...+.||...++|+|+|++|+.+|+| .|+|.
T Consensus         3 ~~f~~~~~~~~~v~eG~~~~L~C~pP~g~P~-p~~~W~k~~~~~~~--~~d~r~~~~~~~G~L~fs~v~~~D~g-~Y~C~   78 (96)
T cd05727           3 DEFPLEERDEVKVKEGWGVVLFCDPPPHYPD-LSYRWLLNEFPNFI--PEDGRRFVSQTNGNLYIAKVEASDRG-NYSCF   78 (96)
T ss_pred             cccCcCCcCceeeeeCCcEEEeeCCCCCCCC-CEEEEEECCccccc--ccCCCeEEeCCCCcEEEeecCHhhCc-eeEEE
Confidence            4567666665 59999999999998664333 28999999875321  12334555556999999999999995 99999


Q ss_pred             EeeccCCcEEeCCCe
Q psy9140          87 TTHKLTGERKISPPS  101 (114)
Q Consensus        87 a~n~l~~~~~~s~~a  101 (114)
                      |+|..+.+.+.+...
T Consensus        79 A~n~~~~~~~~~~~~   93 (96)
T cd05727          79 VSSPSSTKSVFSKFI   93 (96)
T ss_pred             EEecccCCcccCCce
Confidence            999988776666543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.69  E-value=1.4e-16  Score=102.63  Aligned_cols=81  Identities=19%  Similarity=0.292  Sum_probs=62.2

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc----cCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT----TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS   98 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s   98 (114)
                      ++|.|.|.+.+.+.+.+.+.|.||+..+.  ....+.||.+.    ..|+|.|.+++.+|+| .|+|.|.|.++.   .+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~A~n~~g~---~~   74 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPID--LDKPNGHYRRMEVKETIGDLVIVNAQLSHAG-TYTCTAQTVVDS---AS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEcc--ccCCCCcEEEEEecceEeEEEEccCChhhCe-EEEEEEecCCCC---EE
Confidence            46899999987765543689999998651  11235566432    3589999999999995 999999999875   57


Q ss_pred             CCeEEEEeccc
Q psy9140          99 PPSQVMVSEIA  109 (114)
Q Consensus        99 ~~a~L~V~~~~  109 (114)
                      ..++|.|..|+
T Consensus        75 ~~~~L~V~~~P   85 (85)
T cd05854          75 ASATLVVRGPP   85 (85)
T ss_pred             EEEEEEEECCC
Confidence            78999999764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.68  E-value=1.2e-16  Score=99.37  Aligned_cols=71  Identities=13%  Similarity=0.345  Sum_probs=58.4

Q ss_pred             eEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140          24 IAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV  103 (114)
Q Consensus        24 ~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L  103 (114)
                      .|.|.|.+.+.+.|  .++|+|++..+     ..+.||.+..+|.|.|.+++.+|+| .|+|.|.|.++.   .+..++|
T Consensus         1 ~v~l~C~~~G~P~p--~v~W~k~g~~~-----~~~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~G~---~~~~~~L   69 (71)
T cd05723           1 DVIFECEVTGKPTP--TVKWVKNGDMV-----IPSDYFKIVKEHNLQVLGLVKSDEG-FYQCIAENDVGN---VQASAQL   69 (71)
T ss_pred             CEEEEEEEEEeCCC--EEEEEECCeEC-----CCCCCEEEEecCCEEEEcCCcccCE-EEEEEEEcCCCE---EEEEEEE
Confidence            47899999887555  89999999854     3467888888999999999999995 999999999875   4556666


Q ss_pred             EE
Q psy9140         104 MV  105 (114)
Q Consensus       104 ~V  105 (114)
                      .|
T Consensus        70 ~V   71 (71)
T cd05723          70 II   71 (71)
T ss_pred             EC
Confidence            54

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.68  E-value=1.8e-16  Score=99.44  Aligned_cols=75  Identities=23%  Similarity=0.400  Sum_probs=59.0

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      |+++.|.|.+.+.+.|  .++|+||+..+.  ....+.|+.+ .+|.|.|.+++.+|+| .|+|.|.|..+.   .++.+
T Consensus         1 G~~v~l~C~~~G~P~p--~i~W~k~g~~i~--~~~~~~~~~~-~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~~   71 (76)
T cd05867           1 GETARLDCQVEGIPTP--NITWSINGAPIE--GTDPDPRRHV-SSGALILTDVQPSDTA-VYQCEARNRHGN---LLANA   71 (76)
T ss_pred             CCeEEEEEEeeEeCCC--eEEEEECCEECC--CCCCCceEEe-eCCEEEECCCChhhCE-EEEEEEECCCCe---EEEEE
Confidence            7899999999887555  899999998642  1122346655 5799999999999995 999999999865   45567


Q ss_pred             EEEE
Q psy9140         102 QVMV  105 (114)
Q Consensus       102 ~L~V  105 (114)
                      .|.|
T Consensus        72 ~l~V   75 (76)
T cd05867          72 HVHV   75 (76)
T ss_pred             EEEE
Confidence            7766

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.68  E-value=1.8e-16  Score=102.63  Aligned_cols=87  Identities=17%  Similarity=0.289  Sum_probs=65.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      ..+++..+.+|++|.|.|.+.+++.+  .+.|+|++..+.......++||.+..+   +.|.|.+|+.+|+| .|+|.|.
T Consensus         6 ~~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   82 (96)
T cd05732           6 TYLENQTAVELEQITLTCEAEGDPIP--EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAG-RYDCEAS   82 (96)
T ss_pred             eecCceeEecCCcEEEEEEEeEcCCC--cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCE-EeEEEEE
Confidence            46778999999999999999876544  899999986432111123568877543   48999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEE
Q psy9140          89 HKLTGERKISPPSQVM  104 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~  104 (114)
                      |.++..   +..+.|.
T Consensus        83 N~~G~~---~~s~~l~   95 (96)
T cd05732          83 NRIGGD---QQSMYLE   95 (96)
T ss_pred             eCCCCc---EEEEEEe
Confidence            998753   4455554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.68  E-value=9.4e-17  Score=101.71  Aligned_cols=71  Identities=21%  Similarity=0.274  Sum_probs=57.1

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC--C--cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA--G--ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP  100 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~--G--~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~  100 (114)
                      +.|+|.+.+.++|  .|.|+||+..+    ...++||.+..+  |  +|.|.+++.+|+| .|+|.|.|.++.   .+..
T Consensus         1 v~l~C~v~G~P~P--~i~W~k~~~~i----~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G-~Y~C~A~N~~G~---~~~~   70 (75)
T cd05892           1 VKLECQISAIPPP--KIFWKRNNEMV----QYNTDRISLYQDNSGRVTLLIKNVNKKDAG-WYTVSAVNEAGV---ATCH   70 (75)
T ss_pred             CEEEEEEEecCCC--eEEEEECCEEC----cCCCCeEEEEEcCCCcEEEEECCCChhhCE-EEEEEEEcCcCe---EEEE
Confidence            4799999887666  89999999864    123568888653  3  6999999999995 999999999875   5667


Q ss_pred             eEEEE
Q psy9140         101 SQVMV  105 (114)
Q Consensus       101 a~L~V  105 (114)
                      |+|.|
T Consensus        71 a~L~V   75 (75)
T cd05892          71 ARLDV   75 (75)
T ss_pred             EEEeC
Confidence            88875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.68  E-value=2.8e-16  Score=102.89  Aligned_cols=94  Identities=13%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~   82 (114)
                      |.|.+...+.+..+..|..+.|.|.+.+.+.|  .++|.|++..+.......++|+.+..+   +.|.|.+++.+|+| .
T Consensus         1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G-~   77 (97)
T cd05869           1 AKPKITYVENQTAMELEEQITLTCEASGDPIP--SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG-E   77 (97)
T ss_pred             CCceEEEccCceEEEcCCCEEEEEEeeEeCCC--EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCE-E
Confidence            34667777766666568999999999876554  899999887542111223567877543   58999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEE
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      |+|.|.|.++.   .+..+.|.|
T Consensus        78 Y~C~A~N~~G~---~~~~~~l~v   97 (97)
T cd05869          78 YLCTASNTIGQ---DSQSMYLEV   97 (97)
T ss_pred             EEEEEecCCCC---eeEEEEEEC
Confidence            99999999875   344556554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.68  E-value=5e-16  Score=101.78  Aligned_cols=87  Identities=18%  Similarity=0.300  Sum_probs=67.8

Q ss_pred             cceeeccceeEEEeCC---eEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeee
Q psy9140           8 SDYEINTGNTFVLRGN---IAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~---~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y   83 (114)
                      |.|..+|.+..+-+|.   ++.|.|.+.+.+.|  .++|+|++..+    ...+.||.+ .+|.|.|.++. .+|+| .|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P--~i~W~k~~~~i----~~~~~~~~~-~~g~L~I~~~~~~~D~G-~Y   73 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFP--IYKWRKNNLDI----DLTNDRYSM-VGGNLVINNPDKYKDAG-RY   73 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCC--EEEEEECCEEc----cCCCCeEEE-ECCEEEECcCCcCCCCE-EE
Confidence            5688889988766654   89999999887555  89999999854    123568865 58999999985 69995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEE
Q psy9140          84 YCQTTHKLTGERKISPPSQVM  104 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~  104 (114)
                      +|.|.|.++..  .|..|+|.
T Consensus        74 ~C~A~N~~G~~--~s~~a~l~   92 (93)
T cd05849          74 VCIVSNIYGKV--RSREATLS   92 (93)
T ss_pred             EEEEEeCcceE--EEccEEEe
Confidence            99999998753  45577774

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.68  E-value=2.4e-16  Score=103.50  Aligned_cols=77  Identities=22%  Similarity=0.292  Sum_probs=63.4

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C   85 (114)
                      +..+.|++..+.+|++|.|.|.+.+.+  . .+.|+|++..    .+..+.||.+..+|   .|.|++++.+|+| .|+|
T Consensus         2 ~~~~~~~~~~v~~G~~v~l~C~~~G~P--~-~v~W~k~~g~----~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G-~Y~C   73 (92)
T cd05866           2 QVSISLSKVELSVGESKFFTCTAIGEP--E-SIDWYNPQGE----KIVSSQRVVVQKEGVRSRLTIYNANIEDAG-IYRC   73 (92)
T ss_pred             eEEEEecceEEcCCCeEEEEEEEEEeC--C-eEEEEeCCCe----EecCCCCEEEEeCCCeeEEEEecCChHHCE-EEEE
Confidence            346889999999999999999997753  3 6899985442    23456899998777   7999999999995 9999


Q ss_pred             EEeeccCC
Q psy9140          86 QTTHKLTG   93 (114)
Q Consensus        86 ~a~n~l~~   93 (114)
                      .|.|..+.
T Consensus        74 ~A~N~~G~   81 (92)
T cd05866          74 QATDAKGQ   81 (92)
T ss_pred             EEEcCCCc
Confidence            99999754

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.67  E-value=3.5e-16  Score=102.15  Aligned_cols=83  Identities=18%  Similarity=0.309  Sum_probs=67.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..++++.+.+|+++.|.|.+.+. .|  .+.|+|++..+      ..+|+.+.. ++.|.|.+++.+|+| .|+|.|.|.
T Consensus         8 ~~~~~~~v~~g~~v~l~C~a~g~-~p--~i~W~kng~~l------~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~   77 (91)
T cd05740           8 NSVGNQPPEDNQPVTLTCEAEGQ-AT--YIWWVNNGSLL------VPPRLQLSNDNRTLTFNNVTRSDTG-HYQCEASNE   77 (91)
T ss_pred             cccCccccccCCcEEEEEEeCCC-CC--EEEEEECCEEC------CCCCEEEeCCCCEEEECcCChhhCE-EEEEEEEcC
Confidence            45677899999999999999887 54  89999998753      245676654 469999999999995 999999999


Q ss_pred             cCCcEEeCCCeEEEEe
Q psy9140          91 LTGERKISPPSQVMVS  106 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~  106 (114)
                      ++..  .|.+..|.|.
T Consensus        78 ~G~~--~S~~~~L~V~   91 (91)
T cd05740          78 VSNM--TSDPYILNVN   91 (91)
T ss_pred             CCCE--EeeeEEEEeC
Confidence            8763  5668888874

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.67  E-value=2.7e-16  Score=100.48  Aligned_cols=81  Identities=22%  Similarity=0.397  Sum_probs=61.3

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcE----EEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRY----SITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS   98 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~----~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s   98 (114)
                      +++.|.|.+.+.+.+.+.+.|+||+..+..  ...+.+|    ....+|.|.|.+++.+|+| .|+|.|.|.++.   .+
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g~---~~   74 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDF--DKDGGHYRRVGGKDSNGDLMIRNAQLKHAG-KYTCTAQTVVDS---LS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeec--cCCCccEEEEecccccceEEEccCCHHhCe-eeEEEEecCCCc---EE
Confidence            468999999776554336799999986521  1223333    2345789999999999995 999999999865   56


Q ss_pred             CCeEEEEeccc
Q psy9140          99 PPSQVMVSEIA  109 (114)
Q Consensus        99 ~~a~L~V~~~~  109 (114)
                      ..++|.|..|+
T Consensus        75 ~~~~l~V~~pP   85 (85)
T cd04970          75 ASADLIVRGPP   85 (85)
T ss_pred             EEEEEEEECCC
Confidence            78999999874

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.66  E-value=1.4e-16  Score=100.77  Aligned_cols=71  Identities=24%  Similarity=0.340  Sum_probs=57.8

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP  100 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~  100 (114)
                      +.|+|.+.+++.|  .|.|+||+..+    .....||.+..++    .|.|.+++.+|+| .|+|.|.|.++.   .++.
T Consensus         1 v~l~C~v~G~P~P--~v~W~k~~~~l----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~G~---~~~~   70 (75)
T cd05893           1 VRLECRVSGVPHP--QIFWKKENESL----THNTDRVSMHQDNCGYICLLIQGATKEDAG-WYTVSAKNEAGI---VSCT   70 (75)
T ss_pred             CEEEEEEeEecCC--EEEEEECCEEC----CCCCCeEEEEEcCCCEEEEEECCCCHHHCE-EEEEEEEcCCCE---EEEE
Confidence            4799999887666  89999999864    2345788887554    6999999999995 999999999875   5667


Q ss_pred             eEEEE
Q psy9140         101 SQVMV  105 (114)
Q Consensus       101 a~L~V  105 (114)
                      |+|.|
T Consensus        71 a~L~V   75 (75)
T cd05893          71 ARLDV   75 (75)
T ss_pred             EEEeC
Confidence            88875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=4.8e-16  Score=100.85  Aligned_cols=73  Identities=21%  Similarity=0.375  Sum_probs=59.6

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-C---cEEEeecCCCCCCeeeEEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-G---ALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G---~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .|....+.+|+++.|.|.+.+.+.|  .++|+|++..+     ..+.||.+... |   .|.|.+++.+|+| .|+|.|.
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   78 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDP--EVSWLKNDQAL-----ALSDHYNVKVEQGKYASLTIKGVSSEDSG-KYGIVVK   78 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCC--eEEEEECCEEC-----ccCCCEEEEEcCCCEEEEEEccCChhhCE-EEEEEEE
Confidence            4666789999999999999877555  89999999854     44567776432 3   6999999999995 9999999


Q ss_pred             eccCC
Q psy9140          89 HKLTG   93 (114)
Q Consensus        89 n~l~~   93 (114)
                      |.++.
T Consensus        79 N~~G~   83 (92)
T cd05737          79 NKYGG   83 (92)
T ss_pred             ECCCc
Confidence            99875

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.66  E-value=6.8e-16  Score=100.59  Aligned_cols=84  Identities=18%  Similarity=0.269  Sum_probs=63.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCCCeeeE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~gg~Y~   84 (114)
                      ..+.|++..+.+|++|.|.|.+.+.  |+ .++|++ ++..+     ...+|+.+..++    .|.|.+++.+|+| .|+
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~--p~-~i~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   73 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGE--PK-DISWFSPNGEKL-----VTQQQISVVQNDDVRSTLTIYNANIEDAG-IYK   73 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEee--CC-eEEEECCCCCEe-----ccCCCEEEEeCCCCEEEEEEecCCcccCE-EEE
Confidence            4688999999999999999999775  23 799998 45432     234565555444    7999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEE
Q psy9140          85 CQTTHKLTGERKISPPSQVM  104 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~  104 (114)
                      |.|.|.+++.  .+..++|.
T Consensus        74 C~A~N~~g~~--~~~sv~l~   91 (92)
T cd04977          74 CVATDAKGTE--SEATVNLK   91 (92)
T ss_pred             EEEEcCCCCc--ceeEEEEE
Confidence            9999987653  33345554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.65  E-value=1.2e-15  Score=100.11  Aligned_cols=81  Identities=20%  Similarity=0.295  Sum_probs=62.0

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-------CcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-------GALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-------G~L~I~~v~~~D~gg   81 (114)
                      |.-..+....+.+|.+|.|.|.+.+++.|. .+.|.+++..+   ....++||.+..+       +.|.|.+++.+|..|
T Consensus         3 p~i~~~~~~~~~~G~~v~L~C~~~g~P~P~-~v~W~~~~~~i---~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G   78 (98)
T cd05758           3 PIITSEATQYAILGDKGRVECFIFSTPPPD-RIVWTWKENEL---ESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT   78 (98)
T ss_pred             CeEcCCCcEEEeCCCcEEEEEEEcccCCCC-EeEEEECCEEc---cCCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence            333456677899999999999998764441 69999999854   2223579988754       379999999966335


Q ss_pred             eeEEEEeeccCC
Q psy9140          82 RYYCQTTHKLTG   93 (114)
Q Consensus        82 ~Y~C~a~n~l~~   93 (114)
                      .|+|.|.|.++.
T Consensus        79 ~Y~C~A~N~~G~   90 (98)
T cd05758          79 SYNCTAWNSFGS   90 (98)
T ss_pred             eEEEEEEcCCCc
Confidence            999999999874

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.65  E-value=8.1e-16  Score=99.30  Aligned_cols=71  Identities=20%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      ...+.+|+++.|.|.+.+.++|  .+.|+|++..+    ...++||.+..   .+.|.|.+++.+|+| .|+|.|.|.++
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P--~v~W~k~~~~i----~~~~~r~~~~~~~~~~~L~I~~~~~~D~G-~Y~c~a~N~~G   76 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAP--TVTWSRGDKAF----TETEGRVRVESYKDLSSFVIEGAEREDEG-VYTITVTNPVG   76 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCC--eEEEEECCEEC----ccCCCeEEEEEcCCeEEEEECCCccCcCE-EEEEEEEeCCC
Confidence            3478999999999999887655  89999999864    22356888753   357999999999995 99999999987


Q ss_pred             C
Q psy9140          93 G   93 (114)
Q Consensus        93 ~   93 (114)
                      .
T Consensus        77 ~   77 (86)
T cd05894          77 E   77 (86)
T ss_pred             c
Confidence            4

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.65  E-value=5.3e-16  Score=95.41  Aligned_cols=69  Identities=22%  Similarity=0.379  Sum_probs=56.3

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEE
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVM  104 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~  104 (114)
                      |.|+|.+.+.+.|  .+.|+|++..+      ..+|+.+.+++.|.|.+++.+|+| .|+|.|.|.++.   .+..++|.
T Consensus         1 v~l~C~~~g~P~p--~v~W~k~~~~~------~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVP--TVLWRKEDGEL------PKGRAEILDDKSLKIRNVTAGDEG-SYTCEAENMVGK---IEASASLT   68 (69)
T ss_pred             CEEEEECccCCCC--EEEEEECCccC------CCCcEEEeeCCEEEECcCChhHCE-EEEEEEEcCCCc---EEEEEEEE
Confidence            5799999886555  89999997642      457888888999999999999995 999999999875   35566665


Q ss_pred             E
Q psy9140         105 V  105 (114)
Q Consensus       105 V  105 (114)
                      |
T Consensus        69 V   69 (69)
T cd05725          69 V   69 (69)
T ss_pred             C
Confidence            4

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.64  E-value=7.8e-16  Score=96.99  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=57.5

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      |..+.|.|.+.+++.|  .++|+|++..+.   .....+.....++.|.|.+++.+|+| .|+|.|.|.++.   .++.+
T Consensus         1 g~~~~l~C~a~G~P~P--~i~W~k~g~~i~---~~~~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~G~---~~~~~   71 (76)
T cd05868           1 GEDGTLICRANGNPKP--SISWLTNGVPIE---IAPTDPSRKVDGDTIIFSKVQERSSA-VYQCNASNEYGY---LLANA   71 (76)
T ss_pred             CCCEEEEEEeeEeCCC--eEEEEECCEEcc---ccCCCceEEecCCEEEECCCCHhhCE-EEEEEEEcCCCE---EEEEE
Confidence            7899999999887665  899999998652   11222222334568999999999995 999999999875   56677


Q ss_pred             EEEE
Q psy9140         102 QVMV  105 (114)
Q Consensus       102 ~L~V  105 (114)
                      .|.|
T Consensus        72 ~l~v   75 (76)
T cd05868          72 FVNV   75 (76)
T ss_pred             EEEe
Confidence            7776

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.64  E-value=1.1e-15  Score=99.00  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=62.0

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--C-----CcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT--A-----GALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--~-----G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      |+++.|.|.+.+.+++  .+.|+|++..+    .....||.+..  .     ..|.|.++..+|+| .|+|.|.|.++. 
T Consensus         1 g~~~~l~C~~~g~p~~--~i~W~k~~~~i----~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G-~YtC~A~N~~G~-   72 (88)
T cd05735           1 GQKKEMSCTAHGEKPI--IVRWEKEDRII----NPEMSRYLVSTKEVGDEVISTLQILPTVREDSG-FFSCHAINSYGE-   72 (88)
T ss_pred             CCeEEEEEEEECCCCC--EEEEeeCCEEC----CCCCCcEEEEEecCCCcEEEEEEECCCCcccCE-EEEEEEEcCCCc-
Confidence            8899999999875433  89999999753    12346887753  1     46999999999995 999999999975 


Q ss_pred             EEeCCCeEEEEeccc
Q psy9140          95 RKISPPSQVMVSEIA  109 (114)
Q Consensus        95 ~~~s~~a~L~V~~~~  109 (114)
                        .+..+.|.|++++
T Consensus        73 --~~~~~~L~V~~~P   85 (88)
T cd05735          73 --DRGIIQLTVQEPP   85 (88)
T ss_pred             --ceEEEEEEEeCCC
Confidence              4668899998765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=1e-15  Score=98.85  Aligned_cols=83  Identities=16%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE---ccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI---TTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v---~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      ..|++..+.+|++|.|.|.+.+++.|  .+.|+||+..+     ....++..   ...+.|.|++++.+|. |.|+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p--~v~W~~~g~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~-g~Y~C~A~   76 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLP--KVEWIIAGLIV-----IQTRTDTLETTVDIYNLQLSNITSETQ-TTVTCTAE   76 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCC--eEEEEECCEEc-----cCCccEEEEecCCEEEEEEecCCcccC-EEEEEEEE
Confidence            45777889999999999999887655  89999999854     22233221   3356899999999997 59999999


Q ss_pred             eccCCcEEeCCCeEEEE
Q psy9140          89 HKLTGERKISPPSQVMV  105 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V  105 (114)
                      |.++.   .+..++|.|
T Consensus        77 N~~G~---~~~~~~L~v   90 (90)
T cd04972          77 NPVGQ---ANVSVQVTV   90 (90)
T ss_pred             CCCCc---eeEEEEEeC
Confidence            99875   344566653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.64  E-value=1.4e-15  Score=100.39  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=64.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEcc----CCcEEEeecCCCCCCeeeE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSITT----AGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.-+|..|.+|++|.|+|.+.+.+.+  .+.|+|++..++..   ....+.||.+..    ++.|.|+||+.+|+| .|+
T Consensus         2 ~~~~~~tv~~G~tv~L~C~v~g~~~~--~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G-~Yt   78 (95)
T cd05882           2 PVTQDETVAVGGTVTLKCGVKEHDNS--SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG-EYT   78 (95)
T ss_pred             cccccEEEecCCcEEEEEEEeCCCCC--eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE-EEE
Confidence            34578899999999999999876544  89999998754321   123568888652    358999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEE
Q psy9140          85 CQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      |.+.....    .+..|.|.|
T Consensus        79 C~~~t~~~----~~~~~~~~v   95 (95)
T cd05882          79 CSIFTMPV----RTAKATVTV   95 (95)
T ss_pred             EEEEeecc----ccEEEEEEC
Confidence            99998322    244555543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.64  E-value=9.7e-16  Score=97.54  Aligned_cols=87  Identities=20%  Similarity=0.407  Sum_probs=69.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~   84 (114)
                      |.|...|.+..+.+|+++.|.|.+.+.+.+  .++|.+++..+     ..+.||.+..   +..|.|.+++.+|+| .|+
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~--~v~W~~~~~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   72 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPP--TVTWYKNGRPL-----TSSQRYQIESDGGSSSLTIKNVTREDAG-TYT   72 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSS--EEEEEETTEEE-----ESSSSEEEEEETTEEEEEESSESGGGSE-EEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCC--cccccccccce-----eeeeeeeeecccceeEEccCCCChhhCE-EEE
Confidence            468889999999999999999999765333  89999998854     4577887753   457999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEE
Q psy9140          85 CQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      |.|.|..+.   .+..++|.|
T Consensus        73 C~~~n~~g~---~~~~~~l~V   90 (90)
T PF07679_consen   73 CVASNSSGE---ATASVNLTV   90 (90)
T ss_dssp             EEEEETTEE---EEEEEEEEE
T ss_pred             EEEEECCCE---EEEEEEEEC
Confidence            999998542   344556554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.64  E-value=1.1e-15  Score=102.01  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             ceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--------CCcEEEeecCCCCCCeeeEE
Q psy9140          15 GNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITT--------AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--------~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ++..+.+|..+.|.|.+.+ .++|  .+.|+|||..|     ..+.++.+..        .+.|.|.+|+.+|+| .|+|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p--~v~W~Kdg~~i-----~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Ytc   82 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPP--HINWTYDNRTL-----TNKLTEIVTSENESEYRYVSELKLVRLKESEAG-TYTF   82 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCC--ccEEEeCCeeC-----CCCcceeEEEeccCcceEEEEEEEeecCHhhCe-eEEE
Confidence            3678999999999999988 4433  89999999864     2344544432        267999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEe
Q psy9140          86 QTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.|.++.   .+..+.|.|+
T Consensus        83 ~A~N~~G~---~~~t~~L~V~  100 (101)
T cd04975          83 LASNSDAS---KSLTFELYVN  100 (101)
T ss_pred             EEECCCcc---EEEEEEEEEE
Confidence            99999874   4557777775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.63  E-value=1.9e-15  Score=98.11  Aligned_cols=84  Identities=19%  Similarity=0.341  Sum_probs=65.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-cEEEeecCCCCCCeeeEEEEeecc
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-ALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      .+.+..+.+|.+|.|.|.+.+++.+  .+.|.|++..+.    ..+.||.+..+| .|.|.+++.+|+| .|+|.|.|.+
T Consensus         9 ~~~~~~~~~G~~v~L~C~~~g~P~p--~v~W~k~g~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~   81 (95)
T cd05730           9 SEVNATANLGQSVTLACDADGFPEP--TMTWTKDGEPIE----SGEEKYSFNEDGSEMTILDVDKLDEA-EYTCIAENKA   81 (95)
T ss_pred             cccceEEeCCCCEEEEEeccEeCCC--EEEEEECCEECc----CCCCEEEEeCCCCEEEECCCChhhCE-EEEEEEEcCC
Confidence            3456678999999999999887555  899999998541    124678776665 5999999999995 9999999998


Q ss_pred             CCcEEeCCCeEEEEe
Q psy9140          92 TGERKISPPSQVMVS  106 (114)
Q Consensus        92 ~~~~~~s~~a~L~V~  106 (114)
                      +.   .+..+.|.|.
T Consensus        82 G~---~~~~~~L~V~   93 (95)
T cd05730          82 GE---QEAEIHLKVF   93 (95)
T ss_pred             Ce---EEEEEEEEEE
Confidence            75   3456677664

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.63  E-value=1.4e-15  Score=94.93  Aligned_cols=73  Identities=23%  Similarity=0.384  Sum_probs=57.9

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV  103 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L  103 (114)
                      |.|.|.+.+.+.|  .++|+|++....  ....+.|+.+.+ ++.|.|.+++.+|+| .|+|.|.|.++.   .+..++|
T Consensus         1 a~l~C~~~G~P~P--~v~W~k~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~G~---~~~~~~l   72 (75)
T cd05763           1 ARLECAATGHPTP--QIAWQKDGGTDF--PAARERRMHVMPEDDVFFIVDVKIEDTG-VYSCTAQNTAGS---ISANATL   72 (75)
T ss_pred             CEeEeecccccCC--EEEEEeCCCccC--CcccccceEEecCCCEEEEeeCCcccCE-EEEEEEEcCCCE---EEeeEEE
Confidence            6899999887665  899999986432  223456888765 568999999999995 999999999864   5667888


Q ss_pred             EE
Q psy9140         104 MV  105 (114)
Q Consensus       104 ~V  105 (114)
                      .|
T Consensus        73 ~V   74 (75)
T cd05763          73 TV   74 (75)
T ss_pred             EE
Confidence            87

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.63  E-value=2.1e-15  Score=97.67  Aligned_cols=79  Identities=14%  Similarity=0.244  Sum_probs=55.5

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeee-eeccCCcEEE----------ccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-IIHSGGRYSI----------TTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-~~~~~~r~~v----------~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      |++|.|+|.+.+.+.|  .|+|+|++...-.. ......++.+          ...+.|+|.+|+.+|+| .|+|.|.|.
T Consensus         1 G~~v~l~C~v~g~P~P--~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~   77 (90)
T cd04974           1 GSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAG-EYTCLAGNS   77 (90)
T ss_pred             CCcEEEEEEEeCCCCC--eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCc-EEEEEeecc
Confidence            7899999999887665  89999974211000 0011111111          12357999999999995 999999999


Q ss_pred             cCCcEEeCCCeEEEEe
Q psy9140          91 LTGERKISPPSQVMVS  106 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~  106 (114)
                      ++.   .+..|.|.|+
T Consensus        78 ~G~---~~~sa~L~V~   90 (90)
T cd04974          78 IGP---SHHSAWLTVL   90 (90)
T ss_pred             cCc---ccCCEEEEeC
Confidence            986   5778999884

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.63  E-value=1.5e-15  Score=96.28  Aligned_cols=70  Identities=24%  Similarity=0.375  Sum_probs=58.6

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      |++..+.+|.++.|.|.+.+. .+  .+.|+||+..+     ..+.||.+. ++.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~--~v~W~k~g~~l-----~~~~~~~~~-~~~L~I~~~~~~DsG-~Y~C~a~n~~g~   70 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQ--SINWTKDGVQL-----GENNRTRIT-GEEVQIKDAVPRDSG-LYACVTSSPSGS   70 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-Cc--eEEEeeCCcCC-----CCCceEEEe-CCEEEECCCChhhCE-EEEEEEeCCCCc
Confidence            678889999999999999763 22  79999999754     456788875 578999999999995 999999998754

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.63  E-value=8.3e-16  Score=94.89  Aligned_cols=61  Identities=28%  Similarity=0.583  Sum_probs=52.7

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.|.|.+.+.+.|  .++|+||+..+     ..+.||.+.++|.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         1 v~L~C~~~g~P~p--~i~W~k~g~~~-----~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~   61 (69)
T cd05746           1 VQIPCSAQGDPEP--TITWNKDGVQV-----TESGKFHISPEGYLAIRDVGVADQG-RYECVARNTIGY   61 (69)
T ss_pred             CEeEecceEeCCC--EEEEEECCEEC-----CCCCCEEECCCCEEEECcCChhhCE-EEEEEEECCCCc
Confidence            4699999887555  89999998753     4568999998999999999999995 999999999875

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.62  E-value=1.2e-15  Score=95.97  Aligned_cols=71  Identities=20%  Similarity=0.268  Sum_probs=56.3

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP  100 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~  100 (114)
                      +.|+|.+.++++|  .|.|+||+..+.    ....||.+..++    .|.|.+++.+|+| .|+|.|.|.++.   .+..
T Consensus         1 v~L~C~v~G~P~P--~v~W~k~~~~i~----~~~~r~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~   70 (75)
T cd05744           1 VRLECRVSAIPPP--QIFWKKNNEMLT----YNTDRISLYQDNCGRICLLIQNANKEDAG-WYTVSAVNEAGV---VSCN   70 (75)
T ss_pred             CEEEEEEeecCCC--eEEEEECCEECC----CCCCcEEEEEcCCCeEEEEECCCCcccCE-EEEEEEEcCCCc---EEEE
Confidence            4799999887666  899999998641    234688886543    5999999999995 999999999875   4667


Q ss_pred             eEEEE
Q psy9140         101 SQVMV  105 (114)
Q Consensus       101 a~L~V  105 (114)
                      ++|.|
T Consensus        71 ~~l~v   75 (75)
T cd05744          71 ARLDV   75 (75)
T ss_pred             EEEeC
Confidence            77765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.62  E-value=2.8e-15  Score=93.08  Aligned_cols=74  Identities=19%  Similarity=0.330  Sum_probs=58.0

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      |+++.|.|.+.+.+.|  .+.|++++..+    +....|+.+.++|.|.|.+++.+|.| .|+|.|.|.++.   .+..+
T Consensus         1 G~~~~l~C~~~g~P~p--~v~W~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~G~---~~~~~   70 (74)
T cd05764           1 GQRATLRCKARGDPEP--AIHWISPDGKL----ISNSSRTLVYDNGTLDILITTVKDTG-SFTCIASNAAGE---ATATV   70 (74)
T ss_pred             CCeEEEEEEccCcCCC--EEEEEeCCCEE----ecCCCeEEEecCCEEEEEECChhhCE-EEEEEEECCCCe---EEEEE
Confidence            7899999999876544  89999854432    24567888889999999999999995 999999999864   34445


Q ss_pred             EEEE
Q psy9140         102 QVMV  105 (114)
Q Consensus       102 ~L~V  105 (114)
                      +|.|
T Consensus        71 ~l~v   74 (74)
T cd05764          71 ELHI   74 (74)
T ss_pred             EEEC
Confidence            5543

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.62  E-value=2.9e-15  Score=93.05  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=57.5

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      |+.+.|.|.+.+.+.|  .++|++++..+..   ....+.....++.|.|.+++.+|+| .|+|.|.|.++.   .++.+
T Consensus         1 G~~~~l~C~~~g~P~p--~i~W~~~g~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~A~N~~G~---~~~~~   71 (76)
T cd04978           1 GETGRLDCEAEGIPQP--TITWRLNGVPIEE---LPPDPRRRVDGGTLILSNVQPNDTA-VYQCNASNVHGY---LLANA   71 (76)
T ss_pred             CCeEEEEEEceeeCCC--EEEEEECCEECCC---CCCcceEEccCCEEEECCCChhhCE-EEEEEEEccCCe---EEEeE
Confidence            7899999999886555  8999999986421   1111234456799999999999995 999999999764   45567


Q ss_pred             EEEE
Q psy9140         102 QVMV  105 (114)
Q Consensus       102 ~L~V  105 (114)
                      .|.|
T Consensus        72 ~l~V   75 (76)
T cd04978          72 FVHV   75 (76)
T ss_pred             EEEE
Confidence            7776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.61  E-value=4e-15  Score=92.90  Aligned_cols=74  Identities=22%  Similarity=0.404  Sum_probs=60.1

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV  103 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L  103 (114)
                      |.|.|.+.+.+++  .+.|+|++..+.   .....||.+.++| .|.|.+++.+|.| .|+|.|.|.++.   ....++|
T Consensus         1 ~~L~C~v~g~P~p--~v~W~k~~~~l~---~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~~~l   71 (76)
T cd05736           1 ASLRCHAEGIPLP--RLTWLKNGMDIT---PKLSKQLTLIANGSELHISNVRYEDTG-AYTCIAKNEAGV---DEDISSL   71 (76)
T ss_pred             CEeEeEeeecCCC--EEEEEECCEECC---CCCCccEEEeCCCCEEEECcCCcccCE-EEEEEEEcCCCC---cceEEEE
Confidence            6799999886554  899999998652   2234688888777 5999999999995 999999999875   4668899


Q ss_pred             EEec
Q psy9140         104 MVSE  107 (114)
Q Consensus       104 ~V~~  107 (114)
                      .|++
T Consensus        72 ~V~~   75 (76)
T cd05736          72 FVED   75 (76)
T ss_pred             EEEc
Confidence            9875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>KOG4222|consensus

Probab=99.60  E-value=1.6e-15  Score=132.54  Aligned_cols=106  Identities=20%  Similarity=0.329  Sum_probs=88.7

Q ss_pred             CeeeccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140           1 MNMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSY   80 (114)
Q Consensus         1 ~~~avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~g   80 (114)
                      +..||++.+|.+.|.|..+..|+.|+|+|.-|.--+.+ .++|.|||..++   .....++.+...|.|.|+||+..|+|
T Consensus       125 L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~pl~---~~~~~~~~lisgG~LlIsnvrksD~G  200 (1281)
T KOG4222|consen  125 LIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKPLD---HYDVPIIALISGGNLLISNVRKSDEG  200 (1281)
T ss_pred             EEEEEechhcccCcccccccccceeEEeccCCCCCCCC-cceeecCCCccc---cccceeEEEecCCcEEEeccccCCCc
Confidence            35799999999999999999999999999965422222 899999999763   23456777777999999999999996


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEIALPLK  113 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~~  113 (114)
                       +|.|++.|..+-  +.|+.|+|.|.++.+..+
T Consensus       201 -tY~CVatNmvG~--ReS~~A~lsv~e~P~f~~  230 (1281)
T KOG4222|consen  201 -TYACVATNMVGE--RESIPARLSVQEKPWFWK  230 (1281)
T ss_pred             -eeeeeecccccc--cccccceeeeccCCcccc
Confidence             999999998653  789999999999887654

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.60  E-value=4.3e-15  Score=93.70  Aligned_cols=64  Identities=25%  Similarity=0.367  Sum_probs=53.0

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      |++|.|.|.+.+.+.|  .++|+|++..+     ..+.||.+...   +.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         1 G~~v~l~C~~~g~P~p--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~   67 (78)
T cd05743           1 GETVEFTCVATGVPTP--IINWRLNWGHV-----PDSARVSITSEGGYGTLTIRDVKESDQG-AYTCEAINTRGM   67 (78)
T ss_pred             CCEEEEEEEEEEecCC--EEEEEECCeEC-----CCCCCEEEEECCCEEEEEECCCChHHCE-EEEEEEEecCCE
Confidence            7899999999887655  89999998743     34578877543   57999999999995 999999999864

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.60  E-value=3.8e-15  Score=93.88  Aligned_cols=76  Identities=22%  Similarity=0.372  Sum_probs=57.2

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeee---eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEAR---SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~---~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      |+|.|.+.+++.|  .+.|+|++....+   .....++|+.+.++|+|.|.+++.+|+| .|+|.|.|.++..  .+..+
T Consensus         1 v~l~C~~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~~--~s~~~   75 (79)
T cd05734           1 VTLNCSAEGYPPP--TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSG-YYLCKVSNDVGAD--ASKSM   75 (79)
T ss_pred             CEeEeeCeEeCCC--EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCE-EEEEEEEeCCCCC--CceEE
Confidence            5799999887666  8999997543210   0112568999988999999999999995 9999999998753  34455


Q ss_pred             EEEE
Q psy9140         102 QVMV  105 (114)
Q Consensus       102 ~L~V  105 (114)
                      .|.|
T Consensus        76 ~l~~   79 (79)
T cd05734          76 VLTV   79 (79)
T ss_pred             EEeC
Confidence            5543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.59  E-value=5.6e-15  Score=96.46  Aligned_cols=69  Identities=23%  Similarity=0.369  Sum_probs=57.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +|++..+.+|++|.|.|.+.+ +.+  .++|.||+..+.    ..+.||.+. +|.|.|+||+.+|+| .|+|.|.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~--~i~W~~ng~~i~----~~~~r~~~~-~~~L~I~nv~~~DsG-~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLA--RVVWKFDGKVLT----PESAKYLLY-RDGLLIFNASEADAG-RYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCC--eEEEEECCEECC----CCCceEEEE-CCcEEEeCCCHHHCE-EEEEEEEec
Confidence            689999999999999999753 222  899999999652    223688765 789999999999995 999999985

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.59  E-value=4.1e-15  Score=95.54  Aligned_cols=80  Identities=13%  Similarity=0.225  Sum_probs=61.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      |...|+|..|.+|++|.|.|.+.|.+.|. .|.|.||+..+     ..  ++... .+.|.|.++.  |+ |.|.|.|.|
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~-~I~W~k~g~~l-----~~--~~~~~-~s~L~i~~~~--d~-g~Y~C~A~N   68 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPV-EILWWQGGSPL-----GD--PPAPS-PSVLNVPGLN--ET-SKFSCEAHN   68 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCe-EEEEEECCEEC-----CC--CCCCC-CCEEEEcccc--CC-eEEEEEEEe
Confidence            67889999999999999999998865441 59999999854     11  33333 5789999984  77 499999999


Q ss_pred             ccCCcEEeCCCeEE
Q psy9140          90 KLTGERKISPPSQV  103 (114)
Q Consensus        90 ~l~~~~~~s~~a~L  103 (114)
                      .++..  .|..|+|
T Consensus        69 ~~G~~--~s~~a~~   80 (81)
T cd05749          69 AKGVT--TSRTGTV   80 (81)
T ss_pred             ccCcE--EeeeEEe
Confidence            99753  4445655

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.58  E-value=9.8e-15  Score=95.97  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEc----cCCcEEEeecCCCCCCeeeE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSIT----TAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+++..+.+|++|.|+|.+.+.+.+  .+.|++.+..+++.   ....++||.+.    .++.|.|++|+.+|+| .|+
T Consensus         2 ~~~~~v~v~eG~~v~L~C~~~~~p~~--~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG-~Y~   78 (95)
T cd07701           2 PLTQNVTVVEGGTANLTCRVDQNDNT--SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEG-QYT   78 (95)
T ss_pred             cccceEEEecCCcEEEEEEEecCCce--EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE-EEE
Confidence            46789999999999999999765444  78998754433321   12357899873    2358999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEE
Q psy9140          85 CQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      |.+.+. ..   .+..|.|+|
T Consensus        79 C~~~t~-~~---~~~~~~l~v   95 (95)
T cd07701          79 CSLFTM-PV---KTSKAYLTV   95 (95)
T ss_pred             EEeEee-cC---ccEEEEEEC
Confidence            999984 33   255777765

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.58  E-value=4.3e-15  Score=92.26  Aligned_cols=71  Identities=15%  Similarity=0.205  Sum_probs=54.3

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEE
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVM  104 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~  104 (114)
                      ++|.|.+.++++|  .+.|+|++..+     ..+.+.....++.|.|++++.+|+| .|+|.|.|.++.   .+..+.|.
T Consensus         1 ~~L~C~~~G~P~P--~v~W~k~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~l~   69 (71)
T cd05876           1 LVLECIAEGLPTP--EVHWDRIDGPL-----SPNRTKKLNNNKTLQLDNVLESDDG-EYVCTAENSEGS---ARHHYTVT   69 (71)
T ss_pred             CEEEEEeeEecCC--eEEEEECCcCC-----CCCceeEEcCCCEEEEcccCHHhCE-EEEEEEEcCCCe---EEEEEEEE
Confidence            4799999887666  89999998853     2222333456789999999999995 999999999875   34566776


Q ss_pred             Ee
Q psy9140         105 VS  106 (114)
Q Consensus       105 V~  106 (114)
                      |+
T Consensus        70 Ve   71 (71)
T cd05876          70 VE   71 (71)
T ss_pred             EC
Confidence            63

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.58  E-value=7.8e-15  Score=96.44  Aligned_cols=83  Identities=17%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             ceeEEEeCCeEEEEeecCCC-----CCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          15 GNTFVLRGNIAVLQCNIPAY-----NHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~-----~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      .+..+.+|+++.|+|.+.+.     +.+  .+.|+|++..+..+ ...+.|+... +|.|.|.+++.+|+| .|+|.+.|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~--~v~Wyk~~~~~~~~-~~~~~r~~~~-~~~L~I~~~~~~DsG-~Y~C~~~N   81 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL--NLTWYKSDGKTPIP-TEERSRMHQQ-KDLLWFLPAALEDSG-LYTCVVRN   81 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCc--eEEEEEcCCCCccc-ccccceeeec-CCeEEEccCCcccCe-EEEEEEcC
Confidence            57789999999999998763     322  89999998753211 1234676554 689999999999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEE
Q psy9140          90 KLTGERKISPPSQVMV  105 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V  105 (114)
                      ..+.   .+..++|.|
T Consensus        82 ~~g~---~~~~~~L~v   94 (94)
T cd05756          82 STYC---MKVSISLTV   94 (94)
T ss_pred             CCcc---EEEEEEEEC
Confidence            8754   454666654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.58  E-value=9.7e-15  Score=91.50  Aligned_cols=78  Identities=19%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCe---eeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGV---SEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS   98 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~---~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s   98 (114)
                      |++|.|.|.+.+.+.|  .+.|+|++.   .++........++.+...+.|.|.+++.+|+| .|+|.|.|..+.   .+
T Consensus         1 G~~v~l~C~~~g~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~   74 (81)
T cd05765           1 GETASFHCDVTGRPPP--EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG-LYTCTARNSGGL---LR   74 (81)
T ss_pred             CCcEEEEeeccccCCC--cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCE-EEEEEEecCCce---EE
Confidence            7899999999876555  799999742   11111111234677777889999999999995 999999999864   34


Q ss_pred             CCeEEEE
Q psy9140          99 PPSQVMV  105 (114)
Q Consensus        99 ~~a~L~V  105 (114)
                      ..+.|.|
T Consensus        75 ~~~~l~v   81 (81)
T cd05765          75 ANFPLSV   81 (81)
T ss_pred             EEEEEeC
Confidence            4555654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.57  E-value=1.4e-14  Score=91.84  Aligned_cols=81  Identities=19%  Similarity=0.294  Sum_probs=58.7

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEEEeeccCCcE
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQTTHKLTGER   95 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~   95 (114)
                      ..|.+|.++.|.|.+.+++.+  .++|+|++..+..  .....++.+ ...+.|.|.+++.+|+| .|+|.|.|.++.  
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p--~i~W~k~g~~l~~--~~~~~~~~~~~~~~~l~i~~~~~~D~G-~Y~C~a~N~~G~--   76 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTP--TMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEYGS--   76 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCC--EEEEEECCEECCC--CCceeeeEEeCCceEEEEccCCcccCE-EEEEEEEeCCCE--
Confidence            457789999999999887544  8999999986421  011122333 23568999999999995 999999999874  


Q ss_pred             EeCCCeEEEE
Q psy9140          96 KISPPSQVMV  105 (114)
Q Consensus        96 ~~s~~a~L~V  105 (114)
                       .+..++|.|
T Consensus        77 -~~~~~~l~v   85 (85)
T cd05857          77 -INHTYHLDV   85 (85)
T ss_pred             -EEEEEEEEC
Confidence             344556654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.57  E-value=2.1e-14  Score=90.48  Aligned_cols=74  Identities=24%  Similarity=0.475  Sum_probs=54.3

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV  103 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L  103 (114)
                      |.|.|.+.+.+.|  .++|+|++..+    .....+|.+.. .+.|.|.+++.+|+| .|.|.|.|.++. ...+....|
T Consensus         1 v~L~C~~~g~P~p--~v~W~k~g~~l----~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~-~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRP--TYQWFRDGTPL----SDGQGNYSVSSKERTLTLRSAGPDDSG-LYYCCAHNAFGS-VCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCC--cEEEEECCEEC----CCCCccEEEeCCCCEEEEeeCCcccCE-EEEEEEEeCCCe-EeeCceEEE
Confidence            5799999887655  89999999864    12335776654 468999999999995 999999999864 222334555


Q ss_pred             EEe
Q psy9140         104 MVS  106 (114)
Q Consensus       104 ~V~  106 (114)
                      .|-
T Consensus        73 ~v~   75 (77)
T cd05760          73 SII   75 (77)
T ss_pred             EEe
Confidence            543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.57  E-value=1.7e-14  Score=93.97  Aligned_cols=73  Identities=21%  Similarity=0.380  Sum_probs=58.7

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCC---cEEEeecCCCCCCeeeEEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAG---ALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G---~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .|....+.+|++|.|.|.+.+++.+  .+.|+|++..+     ..+.||.+. .++   .|.|.+++.+|+| .|+|.|.
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p--~i~W~k~~~~~-----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~   78 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDP--EVIWFKNDQDI-----ELSEHYSVKLEQGKYASLTIKGVTSEDSG-KYSINVK   78 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCC--eEEEEECCEEC-----CCCCCEEEEEcCCCEEEEEECCCChhhCE-EEEEEEE
Confidence            4667889999999999998776544  79999998853     345667653 233   7999999999995 9999999


Q ss_pred             eccCC
Q psy9140          89 HKLTG   93 (114)
Q Consensus        89 n~l~~   93 (114)
                      |.++.
T Consensus        79 N~~G~   83 (92)
T cd05891          79 NKYGG   83 (92)
T ss_pred             eCCCc
Confidence            99874

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.55  E-value=3.3e-14  Score=91.88  Aligned_cols=79  Identities=22%  Similarity=0.355  Sum_probs=60.8

Q ss_pred             cceeeccceeEEEe---CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCC-CCCCeee
Q psy9140           8 SDYEINTGNTFVLR---GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM-EDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d~~v~~---G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~-~D~gg~Y   83 (114)
                      |.|.-+|.+..+-+   |++|.|.|.+.+.+.+  .++|+|++..+   ....+.+|.+. +|.|.|.++.. +|+| .|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p--~i~W~k~~~~l---~~~~~~~~~~~-~~~L~i~~~~~~~d~G-~Y   74 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPP--TYRWLMNGTEI---DDEPDSRYSLV-GGNLVISNPSKAKDAG-RY   74 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCC--EEEEEECCEEC---CCCCCCCEEEE-CCEEEEecCCccCCCE-EE
Confidence            45778888876544   4679999999665433  89999999864   12235677664 79999999875 8995 99


Q ss_pred             EEEEeeccCC
Q psy9140          84 YCQTTHKLTG   93 (114)
Q Consensus        84 ~C~a~n~l~~   93 (114)
                      +|.|.|.++.
T Consensus        75 ~C~a~N~~G~   84 (91)
T cd04967          75 QCLASNIVGT   84 (91)
T ss_pred             EEEEEcCCCE
Confidence            9999999875

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.54  E-value=2.9e-14  Score=92.06  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=53.7

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCC----eeeeeeeeccCC--cEEEcc----------CCcEEEeecCCCCCCeeeEE
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREG----VSEARSIIHSGG--RYSITT----------AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~----~~~~~~~~~~~~--r~~v~~----------~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      |++|.|.|.+.+.+.|  .++|+|++    ..+     ..++  +..+..          .+.|.|++|+.+|+| .|+|
T Consensus         1 G~~v~L~C~~~g~P~P--~i~W~k~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   72 (90)
T cd05858           1 GSTVEFVCKVYSDAQP--HIQWLKHVEKNGSKY-----GPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAG-EYTC   72 (90)
T ss_pred             CCeEEEEEEEecCCCC--EEEEEEecccCCcEe-----CCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCE-EEEE
Confidence            7899999999887655  89999953    221     1111  122221          147999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEE
Q psy9140          86 QTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|.|.++.   .+..|.|.|
T Consensus        73 ~A~N~~G~---~~~~a~L~V   89 (90)
T cd05858          73 LAGNSIGI---SHHSAWLTV   89 (90)
T ss_pred             EEEeCCCc---ccceEEEEE
Confidence            99999975   466888887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.54  E-value=8.9e-14  Score=93.38  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=67.5

Q ss_pred             cceeeccceeEEE----eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--c-----CCcEEEeecC-
Q psy9140           8 SDYEINTGNTFVL----RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--T-----AGALHIRDTG-   75 (114)
Q Consensus         8 ~~~~v~~~d~~v~----~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~-----~G~L~I~~v~-   75 (114)
                      |.|.+.|+...+.    .|.+|.|.|.+.+.+.+  .+.|+||+..+.    ..+.||.+.  .     .+.|.|.++. 
T Consensus         5 P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p--~i~W~k~g~~l~----~~~~r~~~~~~~~~~~~~s~L~I~~v~~   78 (109)
T cd05773           5 PDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV--QFRWAKNGVPLD----LGNPRYEETTEHTGTVHTSILTIINVSA   78 (109)
T ss_pred             cccccCCceEEEEEecCCCCEEEEEEECcccCCC--EEEEEECCEECC----CCCCeEEEEeeccCccceeEEEECcCCc
Confidence            4566666655443    45899999999876443  899999998641    234577642  1     3579999998 


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .+|.| .|+|.|.|.++.   .+....|.|.+++
T Consensus        79 ~~D~G-~Y~C~A~N~~G~---~~~~i~L~~~~~p  108 (109)
T cd05773          79 ALDYA-LFTCTAHNSLGE---DSLDIQLVSTSRP  108 (109)
T ss_pred             cCCCE-EEEEEEEeCCcc---CcEEEEEEecCCC
Confidence            58995 999999999975   4667788887764

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.54  E-value=3e-14  Score=94.85  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=62.2

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---------CCcEEEeecCCCCCCeeeEEE
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---------AGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---------~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      ...+..|..+.|.|.+.++++|  .+.|+||+..|     ..+.+..+..         .+.|.|.+++.+|+| .|+|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P--~v~W~kdg~~l-----~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G-~Ytc~   83 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPP--QIRWLKDNRTL-----IENLTEITTSEHNVQETRYVSKLKLIRAKEEDSG-LYTAL   83 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCC--ceEEEECCEEC-----cCCcceEEeccccccceeeccEEEEeeCCHHHCE-EEEEE
Confidence            6688999999999999998766  89999999864     2233322211         357999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEe
Q psy9140          87 TTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |.|..+.   .+..+.|.|+
T Consensus        84 A~N~~g~---~~~t~~l~V~  100 (101)
T cd05859          84 AQNEDAV---KSYTFALQIQ  100 (101)
T ss_pred             EEcCCce---EEEEEEEEEE
Confidence            9999754   4557777774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>KOG4194|consensus

Probab=99.52  E-value=2.7e-14  Score=119.69  Aligned_cols=98  Identities=18%  Similarity=0.292  Sum_probs=84.1

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-cEEEeecCCCCCCeeeE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-~L~I~~v~~~D~gg~Y~   84 (114)
                      ..|.|.-.|+|.....|++|.|.|.+.|++.|  .|+|+|||+...  +.....|.+|+|+. ...|.||..||+| .|+
T Consensus       611 ~~PsFtktP~dltl~tg~mArl~CaAtG~P~P--eIawqkdggtdF--PAA~eRRl~Vmpedd~f~Itnvk~eD~G-iYt  685 (873)
T KOG4194|consen  611 QAPSFTKTPEDLTLRTGQMARLECAATGHPRP--EIAWQKDGGTDF--PAARERRLHVMPEDDVFFITNVKIEDQG-IYT  685 (873)
T ss_pred             ccCccccCcccceeecccceeeeeeccCCCCc--ceeehhcCCCCC--chhhhheeeecCCCCEEEEecccccccc-eeE
Confidence            34789999999999999999999999998777  899999998632  23557899999854 7999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |.|.|..++   .+..|+|+|.|-+..
T Consensus       686 C~A~n~AG~---isanAtL~V~e~p~f  709 (873)
T KOG4194|consen  686 CTAQNVAGQ---ISANATLTVLETPSF  709 (873)
T ss_pred             Eeeeccccc---eeeceEEEEecCCcc
Confidence            999999765   788999999986543

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.52  E-value=1.1e-13  Score=89.03  Aligned_cols=87  Identities=24%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .|+...+.+|++|.|+|.+.+ +.+  .+.|+|++..+... .....|+.+.+ +.|.|.+++.+|+| .|+|.|.|...
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~--~i~W~k~~~~~~~~-~~~~~~~~~~~-~~L~I~~~~~~D~G-~Y~C~a~~~~~   75 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLA--SVVWLFQGGPLQRK-EEPEERLLVTE-DGLLIRSVSPADAG-VYTCQSVEHGF   75 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCc--eEEEEECCcccccc-cCcCceEEEcC-CCEEEccCCHHHCE-EEEEEEecCcc
Confidence            467788999999999999864 222  79999998754210 01135777764 66999999999995 99999998643


Q ss_pred             CcEEeCCCeEEEEec
Q psy9140          93 GERKISPPSQVMVSE  107 (114)
Q Consensus        93 ~~~~~s~~a~L~V~~  107 (114)
                      +  ..+....|.|.+
T Consensus        76 ~--~~~~~~~l~V~~   88 (89)
T cd04979          76 K--QTLATYSLNVLE   88 (89)
T ss_pred             c--eeEeEEEEEEec
Confidence            3  355566666643

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.51  E-value=1e-13  Score=87.32  Aligned_cols=71  Identities=20%  Similarity=0.344  Sum_probs=53.5

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCC----CCCCeeeEEEEeeccCCcEEeCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGM----EDSYIRYYCQTTHKLTGERKISP   99 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~----~D~gg~Y~C~a~n~l~~~~~~s~   99 (114)
                      +.|.|.+.+.+.|  .++|+||+..+   ....+.|+.+. .+|.|.|.+++.    +|+ |.|+|.|.|.++..  .|.
T Consensus         1 i~l~C~~~G~P~P--~v~W~k~g~~l---~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~-G~Y~C~A~N~~G~~--~s~   72 (77)
T cd05733           1 IVIKCEAKGNPPP--TFSWTRNGTHF---DPEKDPRVTMKPDSGTLVIDNMNGGRAEDYE-GEYQCYASNELGTA--ISN   72 (77)
T ss_pred             CEEEeeCcccCCC--eEEEEECCeEC---CCCCCCCEEEeCCCCEEEEeccCCCCCcCCC-EEEEEEEEcCCCcE--Ecc
Confidence            4799999887555  89999999864   22345677664 589999999864    788 59999999998753  455


Q ss_pred             CeEE
Q psy9140         100 PSQV  103 (114)
Q Consensus       100 ~a~L  103 (114)
                      .++|
T Consensus        73 ~~~l   76 (77)
T cd05733          73 EIHL   76 (77)
T ss_pred             ccEE
Confidence            5554

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.51  E-value=1.2e-13  Score=88.07  Aligned_cols=76  Identities=26%  Similarity=0.379  Sum_probs=61.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      .++.|+...+.+|++++|.|.+.+.+.+. .+.|+||+..+     .       ..++.|.|.++ .+|+| .|+|.|.|
T Consensus         3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~-~~~W~kng~~l-----~-------~~~~~l~i~~~-~~dsG-~Y~C~a~~   67 (78)
T cd05752           3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQN-STQWYHNGKLL-----E-------TTTNSYRIRAA-NNDSG-EYRCQTQG   67 (78)
T ss_pred             EEeCCCCeEeeCCCCEEEEEeCCCCCCCc-cEEEEECCEEe-----e-------ccCCeEEEeec-ccCCE-EeEEECCC
Confidence            46789999999999999999997754322 68999998753     1       13578999999 99995 99999998


Q ss_pred             ccCCcEEeCCCeEEEE
Q psy9140          90 KLTGERKISPPSQVMV  105 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V  105 (114)
                      .     ..|.+.+|.|
T Consensus        68 ~-----~~S~~v~l~V   78 (78)
T cd05752          68 S-----SLSDPVHLEV   78 (78)
T ss_pred             C-----cCCCCEEEeC
Confidence            5     3677888875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.51  E-value=7.2e-14  Score=86.77  Aligned_cols=71  Identities=23%  Similarity=0.291  Sum_probs=55.2

Q ss_pred             eEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCC
Q psy9140          24 IAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPP  100 (114)
Q Consensus        24 ~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~  100 (114)
                      ++.|.|.+.+.+.|  .+.|+||+..+     ..+.|+.+..   .+.|.|.+++.+|+| .|+|.|.|.++.   .+..
T Consensus         1 ~~~l~c~~~G~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~---~~~~   69 (74)
T cd05748           1 SVRLEVPISGRPTP--TVTWSKDGKPL-----KLSGRVQIETTASSTSLVIKNAERSDSG-KYTLTLKNPAGE---KSAT   69 (74)
T ss_pred             CEEEEeeEeeeCCC--eEEEEECCEEc-----CCCCeEEEEECCCeEEEEECCCCcCcCE-EEEEEEECCCcc---EEEE
Confidence            46799999887665  89999999853     4567887754   347999999999995 999999999865   3445


Q ss_pred             eEEEE
Q psy9140         101 SQVMV  105 (114)
Q Consensus       101 a~L~V  105 (114)
                      ++|.|
T Consensus        70 ~~l~V   74 (74)
T cd05748          70 INVKV   74 (74)
T ss_pred             EEEEC
Confidence            55543

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.50  E-value=9.3e-14  Score=86.31  Aligned_cols=61  Identities=16%  Similarity=0.321  Sum_probs=48.4

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      |.+|.|.|.+.+.+.|  .++|+|++..+     ..+.++.+ ..+.|+|.+++  |+ |.|+|.|.|.++.
T Consensus         1 G~~v~L~C~a~G~P~P--~v~W~k~g~~l-----~~~~~~~~-~~~~L~i~~~~--d~-G~Y~C~A~N~~G~   61 (69)
T cd05739           1 GGSVNLTCVAVGAPMP--YVKWMKGGEEL-----TKEDEMPV-GRNVLELTNIY--ES-ANYTCVAISSLGM   61 (69)
T ss_pred             CCeEEEEEEeeecCCC--EEEEEECCEEC-----CCccceec-CccEEEEeccc--cC-eeEEEEEEeCCCE
Confidence            7899999999887665  89999999853     33455544 35689999985  77 4999999999864

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.50  E-value=1e-13  Score=87.73  Aligned_cols=71  Identities=20%  Similarity=0.314  Sum_probs=53.2

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCC----CCCCeeeEEEEeeccCCcEEeCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGM----EDSYIRYYCQTTHKLTGERKISP   99 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~----~D~gg~Y~C~a~n~l~~~~~~s~   99 (114)
                      ++|.|.+.+++.|  .++|+||+..+   ....+.|+.+ ..+|.|.|.+++.    +|+ |.|+|.|.|.++..  .|.
T Consensus         1 ~~l~C~~~G~P~P--~v~W~k~g~~~---~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~-G~Y~C~A~N~~G~~--~s~   72 (77)
T cd05875           1 IIIECEAKGNPVP--TFQWTRNGKFF---NVAKDPRVSMRRRSGTLVIDFSGGGRPEDYE-GEYQCFARNNLGTA--LSN   72 (77)
T ss_pred             CEEEEeccccCCC--EEEEEECCEEc---cCcCCCcEEEeCCCceEEEeccCCCCCCCCC-EEEEEEEEeccceE--EEE
Confidence            4799999987665  89999999854   2345778877 4689999999753    457 59999999998743  344


Q ss_pred             CeEE
Q psy9140         100 PSQV  103 (114)
Q Consensus       100 ~a~L  103 (114)
                      .++|
T Consensus        73 ~~~~   76 (77)
T cd05875          73 KILL   76 (77)
T ss_pred             EEEE
Confidence            4443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>KOG4221|consensus

Probab=99.50  E-value=8.9e-14  Score=122.41  Aligned_cols=89  Identities=24%  Similarity=0.420  Sum_probs=78.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      .+|..+++++.+..|++|.|+|.+-+  .+.+.+.|+||+.++     ..++|+.++++|.|+|++++..|.| .|+|.+
T Consensus       141 ~~f~~~~~~~t~~~g~ta~f~c~vn~--e~~p~i~w~kn~~pl-----~~~~r~i~lpsG~L~I~~~qp~d~g-~yrc~v  212 (1381)
T KOG4221|consen  141 ADFALQPESTTLLYGQTALFSCEVNA--EPVPTIMWLKNDQPL-----PLDSRVIVLPSGALEISGLQPSDTG-EYRCVV  212 (1381)
T ss_pred             CccccCccceeEecCCcEEEEEEEcC--ccCceeEEecccccc-----cCCCcEEEcCCCcEEecccccCCCc-eEEEEE
Confidence            57999999999999999999999965  222289999999853     5677999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .+.  +..+.|+.|+|.|+
T Consensus       213 t~g--~~~r~S~~a~ltv~  229 (1381)
T KOG4221|consen  213 TGG--ASQRTSNEAELTVL  229 (1381)
T ss_pred             ecC--CcCCccceeEEEec
Confidence            996  55577889999999

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.49  E-value=6.6e-14  Score=85.66  Aligned_cols=69  Identities=22%  Similarity=0.366  Sum_probs=51.8

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEE
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQV  103 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L  103 (114)
                      +.|.|.+.+++.|  .++|+|++..+      ..++... ..++.|.|.+++.+|+| .|+|.|.|.++.   .+....|
T Consensus         1 v~l~C~~~g~P~p--~v~W~k~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~l   68 (71)
T cd05731           1 LLLECIAEGLPTP--EISWIKIGGEL------PADRTKFENFNKTLKIDNVSEEDDG-EYRCTASNSLGS---ARHTISV   68 (71)
T ss_pred             CEEEEEeeEecCC--eEEEEECCeEC------CCCceeEecCCCEEEECCCCHHHCE-EEEEEEEeCCce---EEEEEEE
Confidence            4799999887655  89999998753      1233333 33678999999999995 999999999864   3445666


Q ss_pred             EE
Q psy9140         104 MV  105 (114)
Q Consensus       104 ~V  105 (114)
                      .|
T Consensus        69 ~V   70 (71)
T cd05731          69 TV   70 (71)
T ss_pred             EE
Confidence            65

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.49  E-value=3.9e-13  Score=89.54  Aligned_cols=83  Identities=18%  Similarity=0.265  Sum_probs=62.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc----CC---cEEEeecCCCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----AG---ALHIRDTGMEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~----~G---~L~I~~v~~~D~g   80 (114)
                      +|.-.....+.+.+|++|.|.|.+.+.++|. .|.|.+++..|   ....++||.|..    .|   +|.|.++..+|-+
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~-~i~W~w~~~~i---~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~   77 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPD-RIAWAWKENVL---ESGTSERYTVERTSTGSGVLSTLTINNIMEADFQ   77 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCCCCc-EEEEEEccccc---cCCCCCCEEEEEEccCCCcEEEEEECCCccccCC
Confidence            3445667788999999999999997765443 77888877643   223468999853    23   6999999988843


Q ss_pred             eeeEEEEeeccCCc
Q psy9140          81 IRYYCQTTHKLTGE   94 (114)
Q Consensus        81 g~Y~C~a~n~l~~~   94 (114)
                      |.|.|.|.|.++..
T Consensus        78 g~Y~C~a~N~~G~d   91 (98)
T cd05898          78 THYNCTAWNSFGSG   91 (98)
T ss_pred             cEEEEEEEeCCccc
Confidence            59999999999753

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.48  E-value=7.7e-14  Score=86.86  Aligned_cols=60  Identities=25%  Similarity=0.340  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.|.|.+.++++|  .+.|+||+..+     ..+.|+. ...+.|.|.+++.+|+| .|+|.|.|.+++
T Consensus         1 ~~l~c~v~g~P~p--~v~W~k~g~~l-----~~~~~~~-~~~~~L~I~~v~~~D~G-~YtC~a~N~~g~   60 (71)
T cd04976           1 VRLPVKVKAYPPP--EIQWYKNGKLI-----SEKNRTK-KSGHSLTIKDVTEEDAG-NYTVVLTNKQAK   60 (71)
T ss_pred             CEEEeEEEEeCCC--EEEEEECCEEC-----CCCCEEE-cCCCEEEECcCCHHHCE-EEEEEEEcCCcc
Confidence            3699999887655  89999999854     3345664 45789999999999995 999999999865

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.48  E-value=7.1e-14  Score=87.43  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.|+|.+.+++.|  .++|+||+..+     ..+.++  ..++.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         1 ~~~~c~v~G~P~P--~v~W~k~g~~l-----~~~~~~--~~~~~L~I~~v~~~D~G-~YtC~a~N~~G~   59 (70)
T cd05864           1 VKIPVKYYGYPPP--EVKWYKNGQLI-----VLNHTF--KRGVHLTIYEVTEKDAG-NYTVVLTNPITK   59 (70)
T ss_pred             CEEEeEEEEeCCC--EEEEEECCEEC-----CCCCEE--ccCCEEEECcCCHHHCE-EEEEEEEECCCc
Confidence            4699999888666  89999999864     233333  34568999999999995 999999999875

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.47  E-value=1.2e-13  Score=86.23  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=51.9

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      .+..|+++.|.|.+.+++.+  .+.|+|++..+..    ...+......+.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p--~i~W~k~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~G~   73 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRP--DITWLKDNKPLTP----TEIGESRKKKWTLSLKNLKPEDSG-KYTCHVSNRAGE   73 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCC--cEEEEECCcCCcC----CccceecCceEEEEEccCChhhCE-EEEEEEEcCCcc
Confidence            45679999999999776555  7999999986421    112222223468999999999995 999999998763

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.46  E-value=3.6e-13  Score=88.37  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             eeEEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .+.+.+|.++.|+|........  +. .+.|+||+..+     ..+.+. +..++.|.|.+|+.+|+| .|+|.|.|.++
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i-----~~~~~~-~~~~~~L~I~~v~~~DsG-~YtC~~~n~~~   76 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLL-----EGDRKR-FVKGSKLLIQNVTEEDAG-NYTCKLTFTHN   76 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEEC-----CCCccE-EecCCEEEEeeCChhhCE-EEEEEEEecCC
Confidence            3568899999999987432211  12 89999999864     233333 336899999999999995 99999999987


Q ss_pred             Cc
Q psy9140          93 GE   94 (114)
Q Consensus        93 ~~   94 (114)
                      +.
T Consensus        77 ~~   78 (92)
T cd05757          77 GK   78 (92)
T ss_pred             CE
Confidence            64

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>KOG4221|consensus

Probab=99.45  E-value=3.6e-13  Score=118.68  Aligned_cols=95  Identities=23%  Similarity=0.347  Sum_probs=81.9

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .|-..|+...+.+|+.++|.|.+.+.++|  .|.|+||+..|.    ..+.||.+...++|.|++++.+|+| .|+|+|.
T Consensus       239 ~fl~~p~~~~v~~g~~v~leCvvs~~p~p--~v~Wlrng~~i~----~ds~rivl~g~~slliS~a~~~dSg-~YtC~At  311 (1381)
T KOG4221|consen  239 VFLDEPSNAVVVEGDDVVLECVVSGVPKP--SVKWLRNGEKIS----VDSYRIVLVGGSSLLISNATDDDSG-KYTCRAT  311 (1381)
T ss_pred             eeecCCCccccccCCcEEEEEEecCCCCC--ceEEeeCCeeee----ecceEEEEecccceEEeccccccCc-eEEEEec
Confidence            47889999999999999999999887666  899999999763    2347888888899999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEeccccccc
Q psy9140          89 HKLTGERKISPPSQVMVSEIALPLK  113 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~~~~~~~~  113 (114)
                      |.-+.   ..+.|.|.|..|+++++
T Consensus       312 n~~D~---idasaev~V~a~P~~~~  333 (1381)
T KOG4221|consen  312 NTNDS---IDASAEVTVLAPPGFTK  333 (1381)
T ss_pred             CCCcc---cccceEEEEEcCCCCCC
Confidence            96554   56699999999999875

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.45  E-value=5.6e-13  Score=84.32  Aligned_cols=63  Identities=21%  Similarity=0.315  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCC----CCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGME----DSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~----D~gg~Y~C~a~n~l~~   93 (114)
                      +.|.|.+.+.+.|  .++|+||+..+   ....+.++.+.+ +|+|.|..+..+    |+ |.|+|.|.|.++.
T Consensus         1 ~~l~C~a~G~P~P--~i~W~k~g~~l---~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~-G~Y~C~A~N~~G~   68 (77)
T cd05874           1 IVIQCEAKGKPPP--SFSWTRNGTHF---DIDKDPKVTMKPNTGTLVINIMNGEKAEAYE-GVYQCTARNERGA   68 (77)
T ss_pred             CEEEeeCcccCCC--eEEEEECCeEC---CCcCCCCEEEeCCCceEEEeccccCCCCCCC-EEEEEEEEcCCCe
Confidence            3799999887555  89999998864   234456777654 799999999864    67 5999999999874

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.44  E-value=1.4e-12  Score=85.28  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--eeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      ..+.+|++|.|.|.. ..+.+  .++|+|++.  ... .....++|+.+. ++.|.|++++.+|+| .|+|.|.|...++
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p--~v~Wykq~~g~~~~-~~~~~~~r~~~~-~~~L~I~~~~~~DsG-~Y~C~a~~~~~~~   79 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQA--SVKWLFQRGGDQRK-EEVKTEERLIHT-ERGLLLRSLQRSDAG-VYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCc--eEEEEEECCCCCcc-ccccccccEEEe-cCeEEEeeCChhHCE-EEEEEEEccCCeE
Confidence            468899999999995 33323  899998432  110 012245788775 578999999999995 9999999654443


Q ss_pred             EEeCCCeEEEEec
Q psy9140          95 RKISPPSQVMVSE  107 (114)
Q Consensus        95 ~~~s~~a~L~V~~  107 (114)
                      ..  ..++|.|-+
T Consensus        80 ~~--~~~~l~v~~   90 (91)
T cd05871          80 TL--AKYTLHVIE   90 (91)
T ss_pred             EE--EEEEEEEec
Confidence            22  277888765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.44  E-value=2.5e-13  Score=84.50  Aligned_cols=56  Identities=20%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.|.|.+.++++|  .++|+|||..+     .  .|   ...+.|.|.++..+|+| .|+|.|.|.+++
T Consensus         1 ~~l~c~v~g~P~P--~v~W~kdg~~l-----~--~~---~~~~~L~i~~v~~~D~G-~YtC~a~N~~g~   56 (67)
T cd05863           1 VKLPVKVAAYPPP--EFQWYKDGKLI-----S--GK---HSQHSLQIKDVTEASAG-TYTLVLWNSAAG   56 (67)
T ss_pred             CEEEEEEEEeCCC--EEEEEECCEEC-----c--cc---CCcCEEEECCCCHHHCE-EEEEEEEECCcc
Confidence            3699999888766  89999999864     1  12   13579999999999995 999999999875

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.44  E-value=5.1e-13  Score=85.07  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=58.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      ...|++..+.+|.+|.|.|.+.+ .+.+  .+.|.|++..+     .  .+. ...+|.|.|.+++.+|+| .|+|.|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~--~i~W~~~~~~~-----~--~~~-~~~~~~L~I~~v~~~DsG-~Y~C~a~n   73 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAY--TLVWTRVGGGL-----P--SRA-MDFNGILTIRNVQLSDAG-TYVCTGSN   73 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCc--EEEEEECCCcC-----C--Ccc-cccCCEEEECCCCHHHCE-EEEEEEec
Confidence            34677889999999999999854 3222  89999998742     1  122 234789999999999995 99999999


Q ss_pred             ccCCcEEeCCCeEE
Q psy9140          90 KLTGERKISPPSQV  103 (114)
Q Consensus        90 ~l~~~~~~s~~a~L  103 (114)
                      .++.   .+..|+|
T Consensus        74 ~~g~---~~~~~~l   84 (85)
T cd05754          74 MLDT---DEATATL   84 (85)
T ss_pred             cCCe---EeEEEEE
Confidence            9864   3434444

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.43  E-value=1.2e-12  Score=85.07  Aligned_cols=85  Identities=18%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee---eccCCcEEEc----cCCcEEEeecCCCCCCeeeEEE
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI---IHSGGRYSIT----TAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~---~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +++..+.+|++|.|+|.+.+.+.+  .+.|++.+..+++..   ...++||.+.    .++.|.|++|+.+|+| .|+|.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~   80 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNS--SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEG-RYTCS   80 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCc--eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCE-EEEEE
Confidence            467889999999999998654333  799987444322111   1245799884    2357999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEE
Q psy9140          87 TTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V  105 (114)
                      +.+...+    +..+.|.|
T Consensus        81 ~~~~~~~----~~~~~~~v   95 (95)
T cd05717          81 LYTMPVQ----TAKATVTV   95 (95)
T ss_pred             EecCCCc----eEEEEEEC
Confidence            9986422    33455543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>KOG3513|consensus

Probab=99.43  E-value=7e-13  Score=116.11  Aligned_cols=93  Identities=22%  Similarity=0.313  Sum_probs=79.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .|.|...++|..+-.|..++|.|.+.+.+.|  .++|+|++..+.  ....+.|+.|. +|.|.|+||+.+|+| +|.|.
T Consensus       331 ~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p--~v~WlkNg~pl~--~~~r~~~~~i~-~g~L~is~v~~~dsg-~YQC~  404 (1051)
T KOG3513|consen  331 PPYWLQKPQDTEADTGSNVTLECKASGKPNP--TVKWLKNGEPLE--PAERDPRYKID-DGTLIISNVQESDSG-VYQCI  404 (1051)
T ss_pred             CchhhcccceeEecCCCCeEEEEEecCCCCC--ceEEeeCCeecC--ccCCCcceEEe-CCEEEEEecccccCe-EEEee
Confidence            4678899999999999999999999776555  899999999763  23445569887 799999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.|+++-   ..+.|.|.|...
T Consensus       405 A~Nk~G~---i~anA~L~V~a~  423 (1051)
T KOG3513|consen  405 AENKYGT---IYANAELKVLAS  423 (1051)
T ss_pred             eecccce---EeeeeEEEEEcc
Confidence            9999975   566899999865

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.42  E-value=3.2e-13  Score=85.19  Aligned_cols=61  Identities=23%  Similarity=0.326  Sum_probs=49.1

Q ss_pred             EEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          26 VLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        26 vL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      .|.|.+.++++|  .+.|+||+..+    .....||.+. +++|.|.+|+.+|+| .|+|.|.|...++
T Consensus         2 ~l~c~v~g~P~P--~v~W~kdg~~l----~~~~~~~~~~-~~~L~I~~v~~~D~G-~YtC~a~~~~~~~   62 (72)
T cd07702           2 RLTPKVKAFPAP--EVIWLKDGLPA----AEKCSRYHVD-GYSLVIKDVTEEDAG-IYTILLGIKQYNL   62 (72)
T ss_pred             eEEeeEEEcCCC--eEEEEECCEEC----CCCCcEEEeC-CCEEEECcCCHHHCE-EEEEEEEccccce
Confidence            589999888766  89999999854    1223677664 569999999999995 9999999987665

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.41  E-value=9.5e-13  Score=84.30  Aligned_cols=59  Identities=8%  Similarity=0.197  Sum_probs=45.4

Q ss_pred             EEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE----------ccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          27 LQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI----------TTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        27 L~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v----------~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      |+|.+.++++|  .++|+|||..+     ..+.++.+          ...|.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         3 i~~~v~G~P~P--~v~W~k~g~~i-----~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~YtC~A~N~~G~   71 (81)
T cd04971           3 IPFTVRGNPKP--TLTWYHNGAVL-----NESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNG-NYTLVASNEYGQ   71 (81)
T ss_pred             EEEEeEeeCCC--cEEEEECCEEC-----cCCCceeEEEEeecccccccEEEEEECCCCcccCe-EEEEEEEeCCCC
Confidence            68998887666  89999999865     22333221          12567999999999995 999999999874

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.40  E-value=1.1e-12  Score=84.22  Aligned_cols=59  Identities=10%  Similarity=0.196  Sum_probs=45.9

Q ss_pred             EEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--------ccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          27 LQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--------TTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        27 L~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--------~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      |+|.+.|+++|  .++|+|||..|     ..+.|+..        ...|.|.|.+++.+|+| .|+|+|.|.++.
T Consensus         3 i~~~v~G~P~P--ti~W~kng~~l-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~YtC~A~N~~G~   69 (79)
T cd05855           3 IPFTVKGNPKP--TLQWFHEGAIL-----NESEYICTKIHVINNTEYHGCLQLDNPTHLNNG-IYTLVAKNEYGE   69 (79)
T ss_pred             EEEEEeEeCCC--ceEEEECCEEC-----CCCcceeeeeEeecccceEEEEEECCCCcccCE-EEEEEEEcCCcc
Confidence            68999888766  89999999864     33333211        12568999999999995 999999999874

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.36  E-value=1.8e-12  Score=82.42  Aligned_cols=79  Identities=20%  Similarity=0.326  Sum_probs=53.2

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-c---cCCcEEEeecCCCCCCeeeEEEEeeccCCcEEe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-T---TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKI   97 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~---~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~   97 (114)
                      |+++.|.|.+.+.+.+++.+.|.+++..+.... ....+... .   ..+.|.|.+|+.+|+| .|+|.|.|..+.   .
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~DsG-~Y~C~a~n~~~~---~   75 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGK-SMVTRQSLSEATELSSTLTIPNATLKDSG-TYTCAASSGTMD---Q   75 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCce-EeecccccccceEEEEEEEECCCChhhCE-EEEEEEccCCCc---e
Confidence            789999999977522223899998876432111 11112211 1   2468999999999995 999999999765   4


Q ss_pred             CCCeEEEE
Q psy9140          98 SPPSQVMV  105 (114)
Q Consensus        98 s~~a~L~V  105 (114)
                      +..++|.|
T Consensus        76 ~~s~~v~v   83 (84)
T cd05742          76 KESTKVNI   83 (84)
T ss_pred             EEEEEEEE
Confidence            55666665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.35  E-value=9.6e-12  Score=72.19  Aligned_cols=62  Identities=23%  Similarity=0.405  Sum_probs=48.0

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      +|.++.|.|.+.+++.+  .+.|.+++..+     . ........++.|.|.+++.+|+| .|+|.+.|..
T Consensus         1 ~g~~~~l~C~~~~~~~~--~v~W~~~~~~~-----~-~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVP--NITWLKDGKPL-----P-ESNRLSASGSTLTIKSVSLEDSG-EYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCC--eEEEEECCEEC-----C-CCCEEecCCcEEEEeeCCcccCE-EEEEEEecCC
Confidence            58999999997554333  79999998754     2 23333445789999999999995 9999999864

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.32  E-value=5.3e-12  Score=77.87  Aligned_cols=62  Identities=24%  Similarity=0.463  Sum_probs=45.3

Q ss_pred             EEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCc-EEE---ccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          26 VLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGR-YSI---TTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        26 vL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r-~~v---~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +|.|.+.+ .+.+  .+.|+||+..+.   .....+ +.+   ...+.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         2 ~l~C~~~g~~P~p--~~~W~k~g~~l~---~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~   68 (75)
T cd05750           2 VLKCEATSEYPSL--RFKWFKDGKELN---RKNKPRNIKIRNKKKNSELQINKAKLADSG-EYTCVVENILGN   68 (75)
T ss_pred             EEEEEccCCCCCc--eEEEEcCCeecc---ccCCcceEEEEecCceEEEEEccCCcccCe-EEEEEEEEcCCc
Confidence            69999987 5443  899999998642   111111 223   12468999999999995 999999999875

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.31  E-value=1.8e-11  Score=82.29  Aligned_cols=78  Identities=27%  Similarity=0.262  Sum_probs=59.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eee-eeee--------ccCCcEEEccCCcEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEA-RSII--------HSGGRYSITTAGALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~-~~~~--------~~~~r~~v~~~G~L~I~~v~~   76 (114)
                      .++|....|.+|+.|+|.|.-  ++.+...++|+|...     .+. +...        .-.+|..+.+||+|.|++|+.
T Consensus         2 tie~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~   79 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQ   79 (105)
T ss_pred             eEeccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCc
Confidence            567888899999999999975  323322899999732     111 1110        236899999999999999999


Q ss_pred             CCCCeeeEEEEeecc
Q psy9140          77 EDSYIRYYCQTTHKL   91 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l   91 (114)
                      +|+| .|+|.+.+.-
T Consensus        80 ~D~G-~Y~~~v~~~~   93 (105)
T cd05774          80 KDTG-FYTLQTITTN   93 (105)
T ss_pred             ccCE-EEEEEEEeCC
Confidence            9995 9999999964

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.31  E-value=9.9e-12  Score=97.50  Aligned_cols=84  Identities=14%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEcc-----------CCcEEEeecC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITT-----------AGALHIRDTG   75 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~-----------~G~L~I~~v~   75 (114)
                      ++....|++..+..|..|.|.|.+.+++.+.. .+.|.|||..+.......++|+.+..           .+.|.|.+|+
T Consensus       221 pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~  300 (326)
T PHA02785        221 PPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVK  300 (326)
T ss_pred             CceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcc
Confidence            44456688888999999999999977655422 79999999865211111234544321           4689999999


Q ss_pred             CCCCCeeeEEEEeeccC
Q psy9140          76 MEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~   92 (114)
                      .+|+ |.|+|.|.|..+
T Consensus       301 ~~D~-G~Y~C~A~n~~~  316 (326)
T PHA02785        301 EEDA-TTFTCMAFTIPS  316 (326)
T ss_pred             hhcC-eeeEEEEEeccC
Confidence            9999 599999999863

>smart00409 IG Immunoglobulin

Probab=99.30  E-value=4.4e-11  Score=72.68  Aligned_cols=81  Identities=23%  Similarity=0.417  Sum_probs=60.7

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeC-CeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE-GVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd-~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      |+...+.+|+++.|.|.+.+...  ..+.|.++ +..+     ..+.|+.+...   ..|.|.+++.+|+| .|+|.+.+
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~   72 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLL-----AESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATN   72 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEc-----CCCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEc
Confidence            45677889999999999976522  28999998 6643     24677777665   68999999999995 99999997


Q ss_pred             ccCCcEEeCCCeEEEE
Q psy9140          90 KLTGERKISPPSQVMV  105 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V  105 (114)
                      ..+.  ..+. ..|.|
T Consensus        73 ~~~~--~~~~-~~l~V   85 (86)
T smart00409       73 SSGS--ASST-TTLTV   85 (86)
T ss_pred             CCCe--EEEE-EEEEE
Confidence            6443  2232 66665

>smart00410 IG_like Immunoglobulin like

Probab=99.30  E-value=4.4e-11  Score=72.68  Aligned_cols=81  Identities=23%  Similarity=0.417  Sum_probs=60.7

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeC-CeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE-GVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd-~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      |+...+.+|+++.|.|.+.+...  ..+.|.++ +..+     ..+.|+.+...   ..|.|.+++.+|+| .|+|.+.+
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~v-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~   72 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPP--PEVTWYKQGGKLL-----AESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATN   72 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCC--CeEEEEECCCEEc-----CCCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEc
Confidence            45677889999999999976522  28999998 6643     24677777665   68999999999995 99999997


Q ss_pred             ccCCcEEeCCCeEEEE
Q psy9140          90 KLTGERKISPPSQVMV  105 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V  105 (114)
                      ..+.  ..+. ..|.|
T Consensus        73 ~~~~--~~~~-~~l~V   85 (86)
T smart00410       73 SSGS--ASST-TTLTV   85 (86)
T ss_pred             CCCe--EEEE-EEEEE
Confidence            6443  2232 66665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.30  E-value=2.4e-11  Score=75.91  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=51.3

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc----cCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT----TAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      .+.+|.++.|.|.+.+++.+  .+.|+|++..+     ..+.++...    ....|.|.+++.+|+| .|.|.+.|.++.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~--~v~W~k~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~~g~   76 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRP--TITWLKDGKPF-----KKEHRIGGYKVRKKKWTLILESVVPSDSG-KYTCIVENKYGS   76 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCC--eEEEEECCEEC-----cccCceeEEEccCcEEEEEEeECCcccCE-EEEEEEEECCce
Confidence            45689999999999776444  79999998854     223333321    2347999999999995 999999998754

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.29  E-value=9.6e-12  Score=77.58  Aligned_cols=66  Identities=21%  Similarity=0.414  Sum_probs=46.3

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      ++|+|.+.+.. |.+.+.|+|++..+... ...+.|+.+..   .+.|.|.+++.+|+| .|+|.|.|.++.
T Consensus         1 ~~L~C~a~~~~-p~~~~~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~DsG-~Y~C~a~N~~g~   69 (76)
T cd05895           1 LVLRCETVSEY-PSLRFKWFKNGKEIGAK-NKPDNKIKIRKKKKSSELQISKASLADNG-EYKCMVSSKLGN   69 (76)
T ss_pred             CEEEEecccCC-CCCceEEEECCcccccC-CCCCceEEEEeCCcEEEEEECcCCcccCE-EEEEEEEeCCCc
Confidence            47999985421 22289999998865211 11234555432   367999999999995 999999999864

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.26  E-value=3.2e-11  Score=77.31  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=57.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      +++....|.+|++++|+|.+...... ..+.|+|++..+.         + ...+++|.|.+++.+|+| .|+|.|.|..
T Consensus         4 l~~p~~~V~~G~~vtL~C~~~~~~~~-~~~~w~k~g~~~~---------~-~~~~~~l~I~~~~~~dsG-~Y~C~~~~~~   71 (83)
T cd05753           4 LQVPSRVVFEGEPLVLRCHGWKNKPV-YKVTYYRDGKAKK---------Y-SHSNSNLSIPQATLSDSG-SYHCSGIIGS   71 (83)
T ss_pred             EECCcceecCCCCEEEEeeCCCCCcc-eEEEEEECCeEcc---------c-cCCCceEEECccCHHHCE-EEEEEEEeCC
Confidence            44556679999999999998532111 1789999987531         1 112578999999999995 9999999986


Q ss_pred             CCcEEeCCCeEEEE
Q psy9140          92 TGERKISPPSQVMV  105 (114)
Q Consensus        92 ~~~~~~s~~a~L~V  105 (114)
                      ..  +.|.+-+|.|
T Consensus        72 ~~--~~s~~~~i~~   83 (83)
T cd05753          72 YD--YSSEPVSITV   83 (83)
T ss_pred             ce--ecCCCEEEEC
Confidence            43  3455666654

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.24  E-value=4.6e-11  Score=77.02  Aligned_cols=82  Identities=24%  Similarity=0.322  Sum_probs=54.8

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE----ccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI----TTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKI   97 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v----~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~   97 (114)
                      |+++.|.|.+.+.+.+.+.+.|...+............|...    .-...|.|.+++.+|+| .|+|.|.|..+   ..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~~---~~   76 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLG-RYTCTASSGQM---IA   76 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCE-EEEEEEeecce---Ee
Confidence            789999999954332222789988776431111111112111    12468999999999995 99999999754   35


Q ss_pred             CCCeEEEEec
Q psy9140          98 SPPSQVMVSE  107 (114)
Q Consensus        98 s~~a~L~V~~  107 (114)
                      +..++|.|.|
T Consensus        77 ~~~t~~~V~~   86 (86)
T cd05862          77 KNSTIVIVHE   86 (86)
T ss_pred             cccEEEEEeC
Confidence            7788998875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.24  E-value=5.4e-11  Score=89.58  Aligned_cols=74  Identities=19%  Similarity=0.219  Sum_probs=56.5

Q ss_pred             cceeEEEeCCeEEEEeecCCCC---CCcceEEEeeCCeeeeeeeeccCCcEEEccC-CcEEEeecCCCCCCeeeEEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYN---HNLLLIAWLREGVSEARSIIHSGGRYSITTA-GALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~---~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +.+..+.+|.++.|.|.+.+..   .+.+.++|+||+..+     ..++|+.+..+ +.|.|.+|+.+|+| .|+|.|..
T Consensus       136 ~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l-----~~~~r~~~~~~~~~L~I~~V~~~DsG-~YtC~a~~  209 (227)
T PHA02826        136 TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV-----LYTDRIQLRNNNSTLVIKSATHDDSG-IYTCNLRF  209 (227)
T ss_pred             CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC-----CCCCCEEEeCCCCEEEECcCCHHhCE-EEEEEEEE
Confidence            3456778999999999974221   111289999999854     35678887654 47999999999995 99999998


Q ss_pred             ccCC
Q psy9140          90 KLTG   93 (114)
Q Consensus        90 ~l~~   93 (114)
                      ...|
T Consensus       210 ~~~g  213 (227)
T PHA02826        210 NKNS  213 (227)
T ss_pred             eECC
Confidence            7654

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.23  E-value=8.1e-11  Score=76.57  Aligned_cols=66  Identities=29%  Similarity=0.366  Sum_probs=54.7

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      .++..|.+|+.++|+|...+..+   .+.|++++..+     ..+.|+.+..+| |.|.+++.+|+| .|+|.+.-
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~~A---~v~W~~ng~~l-----~~~~r~~~~~~G-LlI~~~~~~dsG-~Y~C~s~E   68 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSNLA---SPVWLFNGTPL-----NAQFSYRVGTDG-LLILVTSPEHSG-TYRCYSEE   68 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCCCc---cEEEEECCccc-----CCCcceEEeCCC-CEEEECCHhhCE-EEEEEEec
Confidence            46788999999999999755322   79999999853     457899888766 779999999995 99999984

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.23  E-value=8.5e-11  Score=77.87  Aligned_cols=74  Identities=18%  Similarity=0.414  Sum_probs=56.7

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEcc-CC---cEEEeecCCCCCCeeeEEE
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSITT-AG---ALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~~-~G---~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .++..+.+|++|.|.|.+......  .++|++-+..+++.   ....+.||.+.. +|   .|.|++++.+|+| .|.|.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~--~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G-~Y~Cq   80 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDS--VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG-RYFCQ   80 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCcc--EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE-EEEEE
Confidence            467889999999999999664332  68999877654421   113688999765 45   3999999999995 99999


Q ss_pred             Eeec
Q psy9140          87 TTHK   90 (114)
Q Consensus        87 a~n~   90 (114)
                      +...
T Consensus        81 v~t~   84 (95)
T cd05881          81 LYTD   84 (95)
T ss_pred             EEcc
Confidence            9874

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.19  E-value=3.7e-10  Score=74.36  Aligned_cols=92  Identities=22%  Similarity=0.337  Sum_probs=64.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee-----eeeee----eccCCcEEEccC-----CcEEEeecCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-----EARSI----IHSGGRYSITTA-----GALHIRDTGME   77 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-----~~~~~----~~~~~r~~v~~~-----G~L~I~~v~~~   77 (114)
                      ..|+...+.+|.+|.|.|.+.... . ..+.|+|....     ++...    ....+||.+..+     -.|.|++++.+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~-~-~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   80 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTST-F-YYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS   80 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCC-c-cEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence            467788999999999999986531 1 27899985321     11110    124689987532     27999999999


Q ss_pred             CCCeeeEEEEeeccC-CcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLT-GERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~-~~~~~s~~a~L~V~  106 (114)
                      |+| .|.|.+.+.-. .....+..++|.|+
T Consensus        81 DsG-~Y~C~~~~~~~~~~~~~g~gt~l~V~  109 (109)
T cd04983          81 DSA-VYFCALSESGGTGKLTFGKGTRLTVE  109 (109)
T ss_pred             HCE-EEEEEEecCCCCcceEECCCEEEEEC
Confidence            995 99999997532 23344667888774

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.16  E-value=1.2e-10  Score=74.60  Aligned_cols=80  Identities=16%  Similarity=0.259  Sum_probs=51.4

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeC
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS   98 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s   98 (114)
                      |++++|.|.+.+.+.+  .+.|.+.+..+.. ......+..+..   ...|.|.+++.+|+| .|.|.|.|..++. ..+
T Consensus         1 Ge~~~l~C~~~~~~~~--~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~~~~-~~~   75 (84)
T cd05861           1 GETITVNCIVQGNEVV--DFSWTYPGKDIGK-GIPEVEEVKVPATTLRSTLTFPHATVEDSG-TYECAAHESTQDQ-KAF   75 (84)
T ss_pred             CCcEEEEEEEECCCcc--EEEEEECCccCCC-CceEEEEEecCCcEEEEEEEECCCCcCCCE-EEEEEEEECccCc-cee
Confidence            7899999999664332  8999987653210 011111222221   347999999999995 9999999976542 123


Q ss_pred             CCeEEEEe
Q psy9140          99 PPSQVMVS  106 (114)
Q Consensus        99 ~~a~L~V~  106 (114)
                      ...+|.|.
T Consensus        76 ~sv~i~V~   83 (84)
T cd05861          76 KKVNITVH   83 (84)
T ss_pred             EEEEEEEe
Confidence            35566554

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.15  E-value=1.5e-10  Score=71.10  Aligned_cols=76  Identities=22%  Similarity=0.399  Sum_probs=55.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .++...+.+|.++.|.|.+++.+..  .+.|.+++..+     ...       .+.|.|.+++.+|.| .|+|.|.|..+
T Consensus         5 ~~~~~~v~~g~~~~l~C~~~~~p~~--~~~w~~~~~~~-----~~~-------~~~~~~~~~~~~~~g-~y~C~~~~~~~   69 (80)
T PF13895_consen    5 SSSPQSVEEGDSVTLTCSVSGNPPP--QVQWYKNGSPI-----NSS-------QNGLFIPNVSPEDSG-NYTCRASNGSG   69 (80)
T ss_dssp             EEESSEEETTSEEEEEEEEESSSSS--EEEEEETTEEE-----EEE-------SSEEEESSEEGGGTE-EEEEEEEETTE
T ss_pred             EccceEEeCCCcEEEEEEEEcccce--eeeeeeeeeee-----eee-------eeeeeeeeeccccCE-EEEEEEEeCCC
Confidence            3445779999999999999764332  89999998753     111       122888999999995 99999999543


Q ss_pred             CcEEeCCCeEEEE
Q psy9140          93 GERKISPPSQVMV  105 (114)
Q Consensus        93 ~~~~~s~~a~L~V  105 (114)
                        ...|...+|.|
T Consensus        70 --~~~s~~~~v~V   80 (80)
T PF13895_consen   70 --SNTSTSVNVTV   80 (80)
T ss_dssp             --EEEEEEEEEEE
T ss_pred             --CeEeeeEEeeC
Confidence              24566666665

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.14  E-value=9.7e-11  Score=70.21  Aligned_cols=58  Identities=26%  Similarity=0.448  Sum_probs=41.0

Q ss_pred             CCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCc-----EEEeecCCCCCCeeeEEEE
Q psy9140          22 GNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA-----LHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        22 G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~-----L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |++|.|.|.+ ...  ++..++|.|++....     .........++.     |.|.+++.+|+| .|+|.|
T Consensus         1 G~~v~L~C~~~~~~--~~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGP--PPTTVTWSKNGQSLP-----EGSTTNRSTNSVSSTSRLTISNVTPEDSG-TYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESS--STSEEEEEETTTTTS-----EEEEEEEEETTTEEEEEEEESSCTGGGTE-EEEEEE
T ss_pred             CCeEEEEeecCCCC--CCcEEEEEECCcccc-----CcceeEeecccceeeeEEEEccCCHHHCE-EEEEEC
Confidence            8999999999 322  222899999988542     222222222232     999999999995 999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.13  E-value=2.7e-10  Score=89.40  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecC-CCC--CCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIP-AYN--HNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~-~~~--~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |...+..+.+.+|..+.|.|... .+.  .+++.++|.|++.       ..+.|+.+.++|.|.|.||+.+|+| .|+|.
T Consensus       124 ~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-------~~~~r~~~~~~~~L~i~~v~~~d~G-~Y~C~  195 (326)
T PHA02785        124 IDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-------LRNKRLKQRTPGIITIEDVRKNDAG-YYTCV  195 (326)
T ss_pred             cceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-------cCCcceEecCCCeEEEeecChhhCe-EEEEE
Confidence            44445556688999999999731 111  1222899988643       2567999998999999999999995 99999


Q ss_pred             EeeccCCcEE-eCCCeEEEEec
Q psy9140          87 TTHKLTGERK-ISPPSQVMVSE  107 (114)
Q Consensus        87 a~n~l~~~~~-~s~~a~L~V~~  107 (114)
                      |.|..++... .+..+.|.|++
T Consensus       196 ~~n~~g~~~~~~t~~v~l~V~~  217 (326)
T PHA02785        196 LKYIYGDKTYNVTRIVKLEVRD  217 (326)
T ss_pred             EEeccCCEEEeEEEEEEEEEec
Confidence            9998776421 23355677764

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.12  E-value=4.8e-10  Score=76.53  Aligned_cols=79  Identities=14%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCC-cc-eEEEeeCCe------eee-ee---e-e----ccCCcEEE-----ccCCcEEE
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHN-LL-LIAWLREGV------SEA-RS---I-I----HSGGRYSI-----TTAGALHI   71 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd~~------~~~-~~---~-~----~~~~r~~v-----~~~G~L~I   71 (114)
                      +.+..+..|.+|.|+|...+.... .. .|.|.+...      .++ +.   . .    .-.+|...     ..+++|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            456789999999999998543211 23 899944211      011 00   0 0    11247764     23568999


Q ss_pred             eecCCCCCCeeeEEEEeeccCC
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +|++.+|+| .|+|.+.|..+.
T Consensus        85 ~nv~~sD~G-~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNG-TFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCE-EEEEEEEcCCCc
Confidence            999999995 999999998764

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.12  E-value=2.8e-10  Score=72.71  Aligned_cols=66  Identities=24%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             CCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee-------------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          22 GNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS-------------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~-------------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.+|+|+|...+  . .. .+.|.|.+......             ...-.+|+.+..+|+|.|+|++.+|+| .|+|.+
T Consensus         1 G~~VtL~c~~~~--~-~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG-~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLP--E-NLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSG-TYTLQI   76 (92)
T ss_pred             CCcEEEEcccCC--C-CCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcE-EEEEEE
Confidence            889999998854  2 23 89999987543100             012257899999999999999999995 999999


Q ss_pred             eecc
Q psy9140          88 THKL   91 (114)
Q Consensus        88 ~n~l   91 (114)
                      .+.-
T Consensus        77 ~~~~   80 (92)
T cd05741          77 ISTN   80 (92)
T ss_pred             EcCC
Confidence            9874

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.10  E-value=3.6e-10  Score=85.16  Aligned_cols=91  Identities=14%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCC--------cc-eEEEeeCCeeeeeeeeccCC----------cEEEccCCcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHN--------LL-LIAWLREGVSEARSIIHSGG----------RYSITTAGALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~--------~~-~vsW~kd~~~~~~~~~~~~~----------r~~v~~~G~L~I~   72 (114)
                      .+.+...|.+|++|+|+|.+.+++++        .- .+.|.|++.....  -..+.          |+ -..++.|.|.
T Consensus        27 ~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v--~~~~~~~~~~~i~~~~~-~~r~~~L~I~  103 (227)
T PHA02826         27 GDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFV--RDSGARTKIKKITHNEI-GDRSENLWIG  103 (227)
T ss_pred             cCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEE--EcCCCccccccccccce-ecCCCeEEEC
Confidence            44567789999999999997543321        11 8999999753211  01111          21 1236799999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +++.+|+| .|+|+|.|..+.   .....+|.|.+++
T Consensus       104 ~v~~~DsG-~Y~C~a~N~~~~---~~~~i~L~V~~~~  136 (227)
T PHA02826        104 NVINIDEG-IYICTISSGNIC---EESTIRLTFDSGT  136 (227)
T ss_pred             CCChHHCE-EEEEEEEECCcc---eEEEEEEEEecCC
Confidence            99999995 999999997643   3345677776543

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.09  E-value=3.1e-10  Score=74.91  Aligned_cols=71  Identities=21%  Similarity=0.320  Sum_probs=49.7

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee---------eeeccCCcEEEcc----CC--cEEEeecCCCCCCee
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR---------SIIHSGGRYSITT----AG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~---------~~~~~~~r~~v~~----~G--~L~I~~v~~~D~gg~   82 (114)
                      .+.+|++|.|+|.+.+...+  .+.|.+++...++         ......+||.+..    +|  .|.|++++.+|+| +
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~--~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg-t   79 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSI--QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD-T   79 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCc--EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE-E
Confidence            56789999999998654333  8999977643211         0112234554432    44  4999999999995 9


Q ss_pred             eEEEEeecc
Q psy9140          83 YYCQTTHKL   91 (114)
Q Consensus        83 Y~C~a~n~l   91 (114)
                      |.|.+.|+.
T Consensus        80 Y~C~v~~~~   88 (94)
T cd07690          80 YICEVEDKK   88 (94)
T ss_pred             EEEEECCcc
Confidence            999999975

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.08  E-value=5.3e-10  Score=74.06  Aligned_cols=73  Identities=19%  Similarity=0.350  Sum_probs=53.3

Q ss_pred             eEEEeCCeEEEEeec-CCCCCCcc--eEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          17 TFVLRGNIAVLQCNI-PAYNHNLL--LIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~-~~~~~~~~--~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +.+..|....|.|.- ..|-++..  .+.|+||+..+    ...+.||.... ++.|.|.+|+.+|+| .|+|.|.+..+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~~~~~~~   79 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLL----DKDNEKFYSLKGSTYLHIIDVSLNDSG-YYTCKLQFTHE   79 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEEC----cCCCcceEecCCCCEEEEEEcChhhCE-EEEEEEEEeeC
Confidence            467789999999962 23311111  89999999853    22345677643 458999999999995 99999999876


Q ss_pred             Cc
Q psy9140          93 GE   94 (114)
Q Consensus        93 ~~   94 (114)
                      |.
T Consensus        80 g~   81 (95)
T cd05897          80 GK   81 (95)
T ss_pred             CE
Confidence            54

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.08  E-value=1.8e-09  Score=71.78  Aligned_cols=91  Identities=22%  Similarity=0.328  Sum_probs=61.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee--------eccCCcEEEccC----CcEEEee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI--------IHSGGRYSITTA----GALHIRD   73 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~--------~~~~~r~~v~~~----G~L~I~~   73 (114)
                      ...|....|.+|.+|.|.|.+.. ..+  .+.|+|...  .   |+...        ....+||.+..+    -.|.|++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~--~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   78 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHD--NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKS   78 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCC--EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECC
Confidence            35678889999999999999865 222  799999643  1   11100        112578887432    3699999


Q ss_pred             cCCCCCCeeeEEEEeeccC-CcEEeCCCeEEEE
Q psy9140          74 TGMEDSYIRYYCQTTHKLT-GERKISPPSQVMV  105 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~-~~~~~s~~a~L~V  105 (114)
                      ++.+|+| .|.|.+.+.-+ ....-+..++|.|
T Consensus        79 ~~~~Dsg-~Y~Ca~~~~~~~~~~~fg~gT~L~V  110 (110)
T cd05899          79 AEPEDSA-VYLCASSLGGGADEAYFGPGTRLTV  110 (110)
T ss_pred             CChhhCE-EEEEEeeCCCCccceEECCCEEEeC
Confidence            9999995 99999987521 2233455666654

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.05  E-value=5.8e-10  Score=72.31  Aligned_cols=89  Identities=19%  Similarity=0.209  Sum_probs=60.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+.++| ...|.+|.+++|+|..+..   .....|+|+|....   .....  .-...+.|.|.+|+.+|+| .|+|.+
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~~~~---~~~f~l~k~g~~~~---~~~~~--~~~~~~~f~i~~v~~~~~G-~Y~C~~   72 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQGPYG---AVEYRLYREGSTFA---VKKPP--EPQNKAKFFIPSMKREHAG-RYRCYY   72 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEecCCC---CCEEEEEECCCCcc---ccccC--CCceeEEEEccCCChhHCE-EEEEEE
Confidence            3456667 4678999999999998531   11789999987421   11000  0112568999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|....-...|.+..|.|+
T Consensus        73 ~~~~~~~S~~Sd~lel~Vt   91 (91)
T cd05751          73 RSGVALWSEPSDPLELVVT   91 (91)
T ss_pred             ECCCCccCCCCCcEEEEeC
Confidence            9864222345667888774

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=99.04  E-value=2.2e-09  Score=70.93  Aligned_cols=92  Identities=18%  Similarity=0.257  Sum_probs=62.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC-----eeeeeee----eccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG-----VSEARSI----IHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~-----~~~~~~~----~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      ....|....+.+|++|.|.|.+....... .+.|+|..     ..+++..    ....+||.+..++   .|.|++++.+
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~   81 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSN-YLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE   81 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCC-cEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence            34568888999999999999986543111 68999853     1122111    1123689886443   5999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      |+| .|.|.+.+.  ....-+..++|.|
T Consensus        82 Dsg-~Y~Ca~~~~--~~~~fg~gT~L~v  106 (106)
T cd04980          82 DAA-VYYCQQYGT--FPYTFGGGTKLEI  106 (106)
T ss_pred             HCE-EEEEEEeCC--CCCEECCCEEEeC
Confidence            995 999999864  2334566666654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.04  E-value=1.6e-09  Score=70.57  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=46.0

Q ss_pred             CCeEEEEeecCCCCCCcc-eEEEeeCCeee-e--eee---e------ccCCcEEEcc------CCcEEEeecCCCCCCee
Q psy9140          22 GNIAVLQCNIPAYNHNLL-LIAWLREGVSE-A--RSI---I------HSGGRYSITT------AGALHIRDTGMEDSYIR   82 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~-~--~~~---~------~~~~r~~v~~------~G~L~I~~v~~~D~gg~   82 (114)
                      |.+|.|+|...+...... .+.|+|..... +  +..   .      .-.+|+.+..      +.+|.|++|+.+|+| .
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG-L   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE-E
Confidence            789999999853322223 78999975311 1  100   0      0125877632      247999999999995 9


Q ss_pred             eEEEEeecc
Q psy9140          83 YYCQTTHKL   91 (114)
Q Consensus        83 Y~C~a~n~l   91 (114)
                      |+|.+.|.-
T Consensus        80 Y~C~v~~~~   88 (100)
T cd05713          80 YTCFFQSDG   88 (100)
T ss_pred             EEEEEecCC
Confidence            999999853

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>KOG4194|consensus

Probab=99.04  E-value=4.2e-10  Score=94.90  Aligned_cols=104  Identities=17%  Similarity=0.260  Sum_probs=79.8

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-----------cCCcEEEeecC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-----------TAGALHIRDTG   75 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-----------~~G~L~I~~v~   75 (114)
                      .++.+.+|++..++.|..+.|.|.+-++.+.+..+.|.||.+....+.....-+|.-.           -.+.|++.||+
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            4668899999999999999999999554444449999999885422222222333221           14669999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLK  113 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~~  113 (114)
                      .+|+| .|.|+++|.++.  .+|..++|.|...+.+.+
T Consensus       583 ~td~g-rYQCVvtN~FGS--tysqk~KltV~~~PsFtk  617 (873)
T KOG4194|consen  583 FTDEG-RYQCVVTNHFGS--TYSQKAKLTVNQAPSFTK  617 (873)
T ss_pred             cccCc-eEEEEEecccCc--chhheeEEEeeccCcccc
Confidence            99996 999999999987  488899999998887664

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=99.01  E-value=1.9e-09  Score=70.12  Aligned_cols=86  Identities=23%  Similarity=0.254  Sum_probs=57.7

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee-------eccCCcEEEccCC-----cEEEeecCCCCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI-------IHSGGRYSITTAG-----ALHIRDTGMEDSY   80 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~-------~~~~~r~~v~~~G-----~L~I~~v~~~D~g   80 (114)
                      .|.+|++|.|.|.+...... ..+.|+|...     .++...       ....+|+.+..++     .|.|+|++.+|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSS-YYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCc-ceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            47799999999998653111 2889999543     111100       1235788875432     7999999999995


Q ss_pred             eeeEEEEeeccC-CcEEeCCCeEEEE
Q psy9140          81 IRYYCQTTHKLT-GERKISPPSQVMV  105 (114)
Q Consensus        81 g~Y~C~a~n~l~-~~~~~s~~a~L~V  105 (114)
                       .|.|.+.+... .....+..++|.|
T Consensus        81 -~Y~C~v~~~~~~~~~~~~~gt~l~v  105 (105)
T cd00099          81 -VYYCAVSLSGGTYKLYFGQGTRLTV  105 (105)
T ss_pred             -EEEEEEecCCCceeeEECCCEEEeC
Confidence             99999998642 1334466777765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG4222|consensus

Probab=99.00  E-value=5.7e-10  Score=98.39  Aligned_cols=96  Identities=20%  Similarity=0.275  Sum_probs=83.5

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-CcEEEeecCCCCCCeeeE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-GALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G~L~I~~v~~~D~gg~Y~   84 (114)
                      ..|.|..+|.|..|..|..|.|+|.+.+.+.+  .+.|.|++..      ..-.||.|+-+ -+|.|.+++..|+| .|.
T Consensus       224 e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P--~Vrwkk~~~~------~P~~ry~i~~d~qtl~i~r~tp~deg-~y~  294 (1281)
T KOG4222|consen  224 EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQP--TVRWKKDDPS------LPRSRYSILDDTQTLRIDRVTPTDEG-TYV  294 (1281)
T ss_pred             cCCccccccccceeecccccccccccCCCCCC--ceeeeccCCC------CCccceeeeeccccccccccCCCccc-cee
Confidence            34679999999999999999999999886555  8899998764      34679998765 79999999999996 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALPLK  113 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~~  113 (114)
                      |.|.|.+++   ++..|.|+|+.|..+.+
T Consensus       295 C~a~n~vG~---l~asa~ltV~apP~f~k  320 (1281)
T KOG4222|consen  295 CPAENLVGG---LEASATLTVQAPPSFGK  320 (1281)
T ss_pred             eeccccccc---cccccceEEecCccccc
Confidence            999999987   78999999999987764

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.99  E-value=2.8e-09  Score=70.26  Aligned_cols=82  Identities=21%  Similarity=0.249  Sum_probs=52.9

Q ss_pred             eCCeEEEEeecCCCC---CCcc-eEEEeeCCe-----eeeeee--------eccCCcEEEcc----CCcEEEeecCCCCC
Q psy9140          21 RGNIAVLQCNIPAYN---HNLL-LIAWLREGV-----SEARSI--------IHSGGRYSITT----AGALHIRDTGMEDS   79 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~---~~~~-~vsW~kd~~-----~~~~~~--------~~~~~r~~v~~----~G~L~I~~v~~~D~   79 (114)
                      +|.+|.|+|.....+   .... .|.|+|.+.     .+++..        ..-.+|+.+..    +.+|+|++++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            599999999874331   1223 799999752     111100        01146888753    34799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                       |.|+|.+.+....   ......|.|+
T Consensus        81 -G~Y~C~v~~~~~~---~~~~~~l~v~  103 (106)
T cd05877          81 -GRYRCEVIDGLED---ESVVVALRLR  103 (106)
T ss_pred             -EEEEEEEEecccc---eEEEEEEEEE
Confidence             4999999986543   2334455554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.98  E-value=3.2e-09  Score=68.88  Aligned_cols=89  Identities=21%  Similarity=0.388  Sum_probs=60.7

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCe-----eeee---------eeeccCCcEEEccCCc-----EEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGV-----SEAR---------SIIHSGGRYSITTAGA-----LHI   71 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~-----~~~~---------~~~~~~~r~~v~~~G~-----L~I   71 (114)
                      ..|....+.+|.+|.|.|... . .... .+.|.+.+.     .++.         ....-.+|+.+..++.     |.|
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EeCCeEEEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            347777899999999999986 2 1233 899999543     1110         0112256777766555     999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|++.+|+| .|.|.+...  +........+|.|
T Consensus        84 ~~l~~~DsG-~Y~C~v~~~--~~~~~~~~~~L~V  114 (114)
T PF07686_consen   84 KNLQPSDSG-TYFCQVSTS--NEQSFGNGTKLTV  114 (114)
T ss_dssp             SSESGGGEE-EEEEEEEES--SEEEEEEEEEEEE
T ss_pred             CCCCcCcCE-EEEEEEEEC--CCCEECCcEEEEC
Confidence            999999995 999999986  3323333555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.98  E-value=1.9e-09  Score=70.75  Aligned_cols=69  Identities=22%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             EeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeee--------cc----CCcEEEcc-CCcEEEeecCCCCCCeeeEE
Q psy9140          20 LRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSII--------HS----GGRYSITT-AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~--------~~----~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      +.|++|.|+|..+.  .... .+.|.|....++....        ..    .+|+.+.+ +++|.|+|++.+|+| .|.|
T Consensus         2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG-~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAG-SYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCE-EEEE
Confidence            47999999998843  1223 8999997544331110        01    25777876 489999999999995 9999


Q ss_pred             EEeecc
Q psy9140          86 QTTHKL   91 (114)
Q Consensus        86 ~a~n~l   91 (114)
                      .+.+.-
T Consensus        79 ~v~~~~   84 (97)
T cd05775          79 EINTKN   84 (97)
T ss_pred             EEEcCC
Confidence            999875

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.95  E-value=4.2e-09  Score=71.03  Aligned_cols=79  Identities=19%  Similarity=0.357  Sum_probs=55.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCC-CC-------CCcc-eEEEeeCCeeeeeeee--ccCCcEEEccCCcEEEeecCCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPA-YN-------HNLL-LIAWLREGVSEARSII--HSGGRYSITTAGALHIRDTGMED   78 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~-~~-------~~~~-~vsW~kd~~~~~~~~~--~~~~r~~v~~~G~L~I~~v~~~D   78 (114)
                      +.++-+...+.+|+.+.|+|.... +.       +... .+.|.|++..+..+..  ..+.|.+.. .+.|.|..+..+|
T Consensus         3 ~~~~~~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~-~~~Lwf~Pa~~eD   81 (104)
T cd05896           3 WSVDLKKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE-EDSIWFRPAELQD   81 (104)
T ss_pred             cccceeeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe-CCEEEEEeCChhh
Confidence            344556678999999999998622 11       2223 7899999754321111  112477665 6899999999999


Q ss_pred             CCeeeEEEEeec
Q psy9140          79 SYIRYYCQTTHK   90 (114)
Q Consensus        79 ~gg~Y~C~a~n~   90 (114)
                      +| .|+|++.|.
T Consensus        82 SG-~Y~C~~rN~   92 (104)
T cd05896          82 SG-LYTCVLRNS   92 (104)
T ss_pred             Ce-EEEEEECCC
Confidence            95 999999996

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.95  E-value=5.1e-09  Score=69.09  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             eCCeEEEEeecCCCC---CCcc-eEEEeeCC-----eeeeeee------e--ccCCcEEEc----cCCcEEEeecCCCCC
Q psy9140          21 RGNIAVLQCNIPAYN---HNLL-LIAWLREG-----VSEARSI------I--HSGGRYSIT----TAGALHIRDTGMEDS   79 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~---~~~~-~vsW~kd~-----~~~~~~~------~--~~~~r~~v~----~~G~L~I~~v~~~D~   79 (114)
                      +|++|.|+|......   .... .|.|.|..     ...++..      .  .-.+|+...    .+.+|+|++++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            599999999985432   1123 89999972     1111100      0  011244331    256899999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      | .|+|.+.+....   .+...+|.|+
T Consensus        81 G-~Y~C~v~~~~~~---~~~~v~L~V~  103 (106)
T cd05714          81 G-RYRCEVIDGIED---EQDTVELEVR  103 (106)
T ss_pred             E-EEEEEEEcCCCc---eEEEEEEEEE
Confidence            5 999999986332   3446667665

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.92  E-value=1.2e-08  Score=65.96  Aligned_cols=80  Identities=18%  Similarity=0.306  Sum_probs=49.4

Q ss_pred             CeEEEEeecCCCCCCcc-eEEEeeCCee---ee-eee--------eccCCcEEEcc----CCcEEEeecCCCCCCeeeEE
Q psy9140          23 NIAVLQCNIPAYNHNLL-LIAWLREGVS---EA-RSI--------IHSGGRYSITT----AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~-~vsW~kd~~~---~~-~~~--------~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ++|.|+|.......... .|.|+|.+..   .+ ...        ....+|..+..    +.+|+|++|+.+|+| .|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEG-NYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCE-EEEE
Confidence            46899999855332234 8999997641   11 000        01134555442    569999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEE
Q psy9140          86 QTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .+.+...|.  ......|.|
T Consensus        80 ~v~~~~~g~--~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGN--RQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCc--EEEEEEEEe
Confidence            998643332  233444444

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.89  E-value=1.8e-08  Score=68.18  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=50.2

Q ss_pred             cceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeC----Cee-eee-ee----eccC----CcEEEc-----cCCcEEEe
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLRE----GVS-EAR-SI----IHSG----GRYSIT-----TAGALHIR   72 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd----~~~-~~~-~~----~~~~----~r~~v~-----~~G~L~I~   72 (114)
                      |....+.+|.+|.|.|......+ ... .|.|.+-    +.. .++ ..    ...+    +|+...     .+.+|+|+
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            56778999999999999732211 112 6999641    221 111 00    1123    344332     24579999


Q ss_pred             ecCCCCCCeeeEEEEeeccC
Q psy9140          73 DTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +++.+|+| .|+|.+.|.-+
T Consensus        85 ~v~~~D~G-~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNG-TYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCE-EEEEEEEeCCC
Confidence            99999995 99999999765

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.88  E-value=2.1e-08  Score=68.12  Aligned_cols=82  Identities=21%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             eCCeEEEEeecCCCCC---------Ccc-eEEEeeCCe---eeeeeee--------ccCCcEEEcc------CCcEEEee
Q psy9140          21 RGNIAVLQCNIPAYNH---------NLL-LIAWLREGV---SEARSII--------HSGGRYSITT------AGALHIRD   73 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~---------~~~-~vsW~kd~~---~~~~~~~--------~~~~r~~v~~------~G~L~I~~   73 (114)
                      .|+++.|+|.......         +.. .|.|.|-..   ..+....        .-.+|+.+..      +.+|.|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            4899999999843221         113 899998421   1111000        1125888842      56899999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++.+|+ |+|+|.+.+.+..+   +....|.|+
T Consensus        81 l~~sDs-G~Y~C~V~~g~~~~---~~~v~l~v~  109 (112)
T cd05900          81 LRSNDS-GTYRCEVMHGIEDN---YDTVEVQVK  109 (112)
T ss_pred             cccccC-EEEEEEEecCCCCc---eeEEEEEEE
Confidence            999999 49999999876542   334455544

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.87  E-value=3.2e-08  Score=66.55  Aligned_cols=79  Identities=14%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeCCe------eee-eee----eccCC----cEEEcc-----CCcEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLREGV------SEA-RSI----IHSGG----RYSITT-----AGALH   70 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd~~------~~~-~~~----~~~~~----r~~v~~-----~G~L~   70 (114)
                      .|....+.+|.+|.|.|....... ... .+.|++...      .++ +..    ....+    |+.+..     +.+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            477889999999999998743221 122 699976432      111 100    01233    444422     24699


Q ss_pred             EeecCCCCCCeeeEEEEeeccC
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      |++++.+|+| .|.|.+.|.-+
T Consensus        84 I~~v~~~D~G-~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNG-TYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCE-EEEEEEEeCCC
Confidence            9999999995 99999998744

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.86  E-value=1.4e-08  Score=65.31  Aligned_cols=65  Identities=15%  Similarity=0.263  Sum_probs=46.2

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeee--eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARS--IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~--~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.|.|...+. .|+..++|+||+..|...  ....+.+|.+  .++|.+.-+..+|. +.|+|.|.|....
T Consensus         2 ~~L~C~s~~s-kP~a~i~W~k~~~~l~~~~~~~~~~~~~t~--~s~L~~~~~~~Ddg-~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRS-KPAATLRWYRDRKELKGVISQQENGKTVSV--SNTIRFPVDRKDDG-AILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCc-cCCCeEEEEECCEECCCCcccccCCceEEE--EEEEEEEeeeccCC-cEEEEEEEChhhC
Confidence            6799998654 232399999999987311  1123455664  58899987777776 5999999998654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.85  E-value=2.2e-08  Score=67.28  Aligned_cols=70  Identities=20%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             eCCeEEEEeecCCCCCC-------cc-eEEEeeCC--eee-eee--------eeccCCcEEEc------cCCcEEEeecC
Q psy9140          21 RGNIAVLQCNIPAYNHN-------LL-LIAWLREG--VSE-ARS--------IIHSGGRYSIT------TAGALHIRDTG   75 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~-------~~-~vsW~kd~--~~~-~~~--------~~~~~~r~~v~------~~G~L~I~~v~   75 (114)
                      .|.+|+|+|.......+       .. .|.|+|..  ... +..        ...-.+|+.+.      .+.+|.|+|++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            48999999998543321       12 89999962  221 110        00113688773      23569999999


Q ss_pred             CCCCCeeeEEEEeecc
Q psy9140          76 MEDSYIRYYCQTTHKL   91 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l   91 (114)
                      .+|+| .|.|.+.+..
T Consensus        81 ~sD~G-~Y~C~v~~~~   95 (110)
T cd05878          81 SSDSG-VYRCEVMHGI   95 (110)
T ss_pred             hhhCE-EEEEEEEeCC
Confidence            99995 9999999853

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.84  E-value=2.8e-08  Score=66.40  Aligned_cols=78  Identities=15%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~~-----G~L~I~   72 (114)
                      ..|....+.+|++|.|.|.+.....+...+.|+|..  ..   |+...         ....+||.+..+     ..|.|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            356677888999999999985421111179999952  21   11110         012579987533     369999


Q ss_pred             ecCCCCCCeeeEEEEeec
Q psy9140          73 DTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~   90 (114)
                      +++.+|+| .|.|.+...
T Consensus        83 ~~~~~Dsg-~Y~C~~~~~   99 (116)
T cd04982          83 NLEKEDSA-TYYCAYWES   99 (116)
T ss_pred             ECCHHHCE-EEEEEEecC
Confidence            99999995 999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.83  E-value=5.1e-09  Score=63.13  Aligned_cols=71  Identities=18%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      .+.+.......|+ +.|.|.+.+...+ ..++|+ +...    ......+.....++.|.|++|..+|.| .|+|+|.|
T Consensus         5 ~~~~~~~~~~~~~-~~l~C~~~~~~~~-~~~~W~-~~~~----~~~~~~~~~~~~~~~L~i~~v~~~~~g-~y~C~a~N   75 (75)
T PF13927_consen    5 SVPPPPVVTSGGS-VTLTCSAEGGPPP-PSISWY-DSNP----SFNSNSRGSSSSNSTLTISNVTRSDNG-TYTCIASN   75 (75)
T ss_dssp             EEESTSEEETTEE-EEEEEEESSEESS-EEEEEE-TEEE----EEEEEEEEEEEEEEEEEESSCCGGGTE-EEEEEEEE
T ss_pred             EEcCCCcEeecee-EEEEEEEccccCC-eEEEEE-ecCC----ceeeeeeeccceeeEEEEccCCHHhCc-EEEEEEEC
Confidence            3444444444444 9999999775432 289999 2111    112223333344689999999999995 99999987

...

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.82  E-value=3.8e-08  Score=64.28  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             CCeEEEEeecCCCCCCcc-eEEEeeCCe----eeeeee--------eccCCcEEEc----cCCcEEEeecCCCCCCeeeE
Q psy9140          22 GNIAVLQCNIPAYNHNLL-LIAWLREGV----SEARSI--------IHSGGRYSIT----TAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~-~vsW~kd~~----~~~~~~--------~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      |++|.|.|.....  ... .+.|+|...    .++...        ..-.+|+.+.    .+.+|.|+||+.+|+| .|+
T Consensus         1 G~~vtL~C~~~~~--~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G-~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTLP--EEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEG-CYK   77 (97)
T ss_pred             CCcEEEEEEeCCC--CeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeE-EEE
Confidence            8899999986432  223 799998542    111000        0113455552    2457999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEe
Q psy9140          85 CQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |...+...+.  .+..+.|.|.
T Consensus        78 C~~~~~p~g~--~~~~~~L~v~   97 (97)
T cd05846          78 CIFNTFPDGS--KSGTMCLTVY   97 (97)
T ss_pred             EEEEeCCCCC--eeeEEEEEEC
Confidence            9999876664  5556777763

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.82  E-value=4.7e-08  Score=65.51  Aligned_cols=94  Identities=22%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-------eeccCCcEEEcc---CC--cEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-------IIHSGGRYSITT---AG--ALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-------~~~~~~r~~v~~---~G--~L~I~~v~~   76 (114)
                      ...|+...+.+|.+|.|+|......... .+.|+|..  ....+.       ....++||.+..   ++  +|.|.+++.
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNY-YIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCce-EEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            4567788999999999999975422111 78999842  211110       012358998852   22  699999999


Q ss_pred             CCCCeeeEEEEeeccCC-----cEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTG-----ERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~-----~~~~s~~a~L~V~  106 (114)
                      +|+| .|.|.+.....+     ...-+..++|.|+
T Consensus        82 ~Dsg-~Y~C~~~~~~~~~~~~~~~~fg~gt~l~v~  115 (116)
T cd07706          82 EDSA-KYFCALSTLGMGSYDTDKLIFGKGTRVTVE  115 (116)
T ss_pred             HHCE-EEEEEEECCCCCcccccCCEECCCeEEEEc
Confidence            9995 999999964321     1234567788775

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.82  E-value=7.9e-08  Score=65.07  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=51.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC---CCcc-eEEEeeCCee-----eeeee-------eccCCcEEEc---cC--CcEEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN---HNLL-LIAWLREGVS-----EARSI-------IHSGGRYSIT---TA--GALHI   71 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~---~~~~-~vsW~kd~~~-----~~~~~-------~~~~~r~~v~---~~--G~L~I   71 (114)
                      .|+...+.+|.+|+|+|......   .+.. .+.|+|....     +++..       ..-.+||.+.   ..  -+|+|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            47778999999999999763211   1112 6899997532     11100       1113699883   22  36999


Q ss_pred             eecCCCCCCeeeEEEEeec
Q psy9140          72 RDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ++++.+|+| .|.|.+...
T Consensus        85 ~~l~~~Dsg-~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSG-KYFFRVELG  102 (119)
T ss_pred             ccCChhhCe-EEEEEEEcC
Confidence            999999995 999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.82  E-value=4.5e-08  Score=64.53  Aligned_cols=80  Identities=21%  Similarity=0.335  Sum_probs=50.9

Q ss_pred             CeEEEEeecCCCCCCcc-eEEEeeCCee-----ee-e-ee-----e-ccCCcEEEc-----cCCcEEEeecCCCCCCeee
Q psy9140          23 NIAVLQCNIPAYNHNLL-LIAWLREGVS-----EA-R-SI-----I-HSGGRYSIT-----TAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~-~vsW~kd~~~-----~~-~-~~-----~-~~~~r~~v~-----~~G~L~I~~v~~~D~gg~Y   83 (114)
                      .+|.|+|.......+.. .|.|.|....     ++ + ..     . .-.+|....     .+++|.|+||+.+|+| .|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~G-tY   79 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEG-KY   79 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccce-EE
Confidence            36899999854332334 8999994321     11 1 00     0 001344432     2678999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEE
Q psy9140          84 YCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|.+.+.-+|.  .+....|.|
T Consensus        80 ~C~v~~~p~g~--~~~~~~L~V   99 (100)
T cd05888          80 KCRVITFPAGN--FEAELVLTV   99 (100)
T ss_pred             EEEEEeCCCCC--eeeEEEEEe
Confidence            99999966664  355666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.79  E-value=3.6e-08  Score=64.24  Aligned_cols=85  Identities=20%  Similarity=0.278  Sum_probs=55.8

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee----eccCCcEEEccCC---cEEEeecCCCCCCeeeEE
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI----IHSGGRYSITTAG---ALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~----~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C   85 (114)
                      .|.+|++|.|.|...........+.|+|-..  .   ++...    ....+||.+..++   .|.|++++.+|+| .|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg-~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEA-DYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCE-EEEE
Confidence            4679999999999754311111689988543  1   11110    0114689886554   4999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEE
Q psy9140          86 QTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .+.+.  ....-+..++|.|
T Consensus        81 ~~~~~--~~~~fg~gT~L~V   98 (98)
T cd04984          81 QVWDS--NSYVFGGGTKLTV   98 (98)
T ss_pred             EEccC--CCCEECCCEEEeC
Confidence            99864  3334566777765

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.75  E-value=2.9e-08  Score=63.67  Aligned_cols=68  Identities=24%  Similarity=0.502  Sum_probs=47.2

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..|+.+.|.|.+.++.++.+.++|+||+..+...      ....++.|.+.  ..|.|...+.+|. +.|+|.|.|.
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~~~~~~~~-~~y~C~v~h~   84 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVS--SQLTVSPSDWNSG-DTYTCVVTHE   84 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEE--EEEEECHHHhCCC-CCEEEEEEeC
Confidence            5799999999998874322389999999875211      11334444443  3577777766677 5999999996

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.74  E-value=1.4e-07  Score=62.52  Aligned_cols=77  Identities=19%  Similarity=0.309  Sum_probs=51.0

Q ss_pred             eEEEEeecCCCCCCcc-eEEEeeCCe----eeeeeee--------ccCCcEEE----ccCCcEEEeecCCCCCCeeeEEE
Q psy9140          24 IAVLQCNIPAYNHNLL-LIAWLREGV----SEARSII--------HSGGRYSI----TTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        24 ~AvL~C~~~~~~~~~~-~vsW~kd~~----~~~~~~~--------~~~~r~~v----~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +|.|+|....  .+.. .|+|.|-..    .+..-..        .-.+|..+    ..+++|.|+||+.+|+| .|+|.
T Consensus         2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G-~Y~C~   78 (96)
T cd05887           2 NVTLKCRIQV--NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIG-VYICK   78 (96)
T ss_pred             CEEEEEEecC--CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccE-EEEEE
Confidence            6899999854  2345 899998532    2210000        11246666    23789999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEE
Q psy9140          87 TTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V  105 (114)
                      +.+.-.|.  .++.+.|.|
T Consensus        79 v~tfP~G~--~~~~~~l~~   95 (96)
T cd05887          79 AVTFPLGN--TQSSTTVTV   95 (96)
T ss_pred             EEeCCCCC--eeEEEEEEE
Confidence            99887775  333455554

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.73  E-value=1.3e-07  Score=62.86  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=51.5

Q ss_pred             eEEEEeecCCC-CCCcc-eEEEeeCC---e-eee-ee-----ee--ccCCcEEEcc----CCcEEEeecCCCCCCeeeEE
Q psy9140          24 IAVLQCNIPAY-NHNLL-LIAWLREG---V-SEA-RS-----II--HSGGRYSITT----AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        24 ~AvL~C~~~~~-~~~~~-~vsW~kd~---~-~~~-~~-----~~--~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      .|.|+|..... +...+ .|+|.|..   . .++ +.     ..  .-.+|.....    +++|.|+|++.+|+| .|+|
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G-~Y~C   80 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEG-VYIC   80 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCE-EEEE
Confidence            58999998532 12233 79999952   1 111 11     01  1135666542    489999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEE
Q psy9140          86 QTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .+.|.-+|.  .+....|.|
T Consensus        81 ~v~t~P~g~--~~~~~~L~V   98 (99)
T cd05886          81 EFATFPTGN--RESQLNLTV   98 (99)
T ss_pred             EEEeCCCCC--eEEEEEEEE
Confidence            999965553  455667766

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.72  E-value=8.9e-08  Score=64.25  Aligned_cols=82  Identities=20%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee-----e--ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI-----I--HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~-----~--~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      ...|.+|..+.|.|.+.++|+|. ...|.+++..+.-..     .  ..+.||    ...|++..+..+|+| .|+|.|.
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~-~~~W~~~~~~l~~~~~~~~~~~~~~~~rY----~S~L~L~Rlk~~E~G-~YTf~a~   85 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPE-HQQWIYMNRTLTNTSDHYVKSRNESNNRY----VSELHLTRLKGTEGG-TYTFLVS   85 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCe-eeEEEcCCcccCccccceeEEeccCceEE----EEEEEEeecChhhCc-EEEEEEE
Confidence            45799999999999999887652 489999987542100     0  011234    246999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEe
Q psy9140          89 HKLTGERKISPPSQVMVS  106 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~  106 (114)
                      |..+.   .+..-.|.|+
T Consensus        86 N~~~~---~s~tF~l~v~  100 (101)
T cd05860          86 NSDAS---ASVTFNVYVN  100 (101)
T ss_pred             CCCCe---EEEEEEEEEe
Confidence            98654   3445555553

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.66  E-value=2.6e-07  Score=58.22  Aligned_cols=62  Identities=15%  Similarity=0.267  Sum_probs=40.3

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-------CcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-------GALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-------G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +.|.|.+.++.+. +.++|+||+..+..    ......++++       ..|.|...+.+|. |.|+|.|.|..-
T Consensus         2 ~~L~C~v~g~~P~-~~v~W~~~g~~l~~----~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~-~~y~C~a~n~~l   70 (82)
T cd05759           2 YNLTCRARGAKPA-AEIIWFRDGEVLDG----ATYSKELLKDGKRETTVSTLPITPSDHDTG-RTFTCRARNEAL   70 (82)
T ss_pred             EEEEEEEeCccCC-CEEEEEECCEEccC----ceeeeeEecCCCeEEEEEEEEEeCceecCC-CEEEEEEcCccC
Confidence            6799999765222 28999999986421    0001112233       3588887777776 599999999753

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.65  E-value=3.5e-07  Score=63.13  Aligned_cols=80  Identities=23%  Similarity=0.434  Sum_probs=51.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------------eeeccCCcEEEccCCcEEEeecC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------------SIIHSGGRYSITTAGALHIRDTG   75 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------------~~~~~~~r~~v~~~G~L~I~~v~   75 (114)
                      +...+.+.+....+|..+.|.|.+.++.++.+.|+|+|++.....            .....|+-|.+.  ..|.|. .+
T Consensus        39 P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~--s~L~v~-~~  115 (139)
T cd05771          39 PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS--SHLTLE-PG  115 (139)
T ss_pred             CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE--EEEEec-CC
Confidence            445666666666689999999999886433238999999854210            011334455543  345555 44


Q ss_pred             CCCCCeeeEEEEeec
Q psy9140          76 MEDSYIRYYCQTTHK   90 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~   90 (114)
                      .+|.|..|+|.+.|.
T Consensus       116 ~~~~g~~ytC~V~H~  130 (139)
T cd05771         116 TEDAGATYTCRVSHV  130 (139)
T ss_pred             ccCCCCEEEEEEEcC
Confidence            445556999999985

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.65  E-value=1.9e-07  Score=62.00  Aligned_cols=84  Identities=31%  Similarity=0.377  Sum_probs=53.7

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCee-----e---eeee---------eccCCcEEE--ccCC---cEEEeecC
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-----E---ARSI---------IHSGGRYSI--TTAG---ALHIRDTG   75 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-----~---~~~~---------~~~~~r~~v--~~~G---~L~I~~v~   75 (114)
                      .|-+|++|.|.|......... .+.|+|-...     +   +...         ....+||.+  ..++   .|.|++++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~-~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENT-RIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCC-eEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            467899999999974421122 6899986432     1   1000         011468876  3333   49999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .+|+| .|.|...+.  ....-+..++|.|
T Consensus        81 ~~Dsg-~YyCa~~~~--~~~~Fg~gT~L~V  107 (107)
T cd07700          81 PEDSG-TYFCMTVGS--PELTFGTGTQLSV  107 (107)
T ss_pred             HHHCE-EEEEeEcCC--CCCEECcCEEEeC
Confidence            99995 999998753  2234466667664

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.63  E-value=3.4e-07  Score=62.07  Aligned_cols=93  Identities=20%  Similarity=0.290  Sum_probs=59.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--ee---eeee---------eccCCcEEEccC--C---cEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SE---ARSI---------IHSGGRYSITTA--G---ALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~---~~~~---------~~~~~r~~v~~~--G---~L~I~   72 (114)
                      ++|....+-+|++|.|+|...........+.|+|-..  ..   +...         ....+||.+.-+  .   .|.|+
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            4677888999999999998643211111689998432  21   1100         011468988522  2   69999


Q ss_pred             ecCCCCCCeeeEEEEeecc---CCcEEeCCCeEEEE
Q psy9140          73 DTGMEDSYIRYYCQTTHKL---TGERKISPPSQVMV  105 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l---~~~~~~s~~a~L~V  105 (114)
                      +++.+|+ |.|.|.+....   +....-...++|.|
T Consensus        82 ~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~GT~L~V  116 (117)
T cd04981          82 SLTPEDT-AVYYCARGLGGYGYGYFDYWGQGTLVTV  116 (117)
T ss_pred             CCCHHHC-EEEEEEEEcCCCCCccEeeECCCEEEEE
Confidence            9999999 59999987532   22334566777776

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.61  E-value=3.2e-07  Score=58.79  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--ccC-CcEEEee-----cCCCCCCeeeEEEEeeccCC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--TTA-GALHIRD-----TGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~~~-G~L~I~~-----v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.|.|.+.++-++ ..|+|+||+..+.     .+ ...+  .++ |..++..     +..+|.|..|+|.|.|.--.
T Consensus         2 ~~LtC~a~g~~P~-~~ItW~k~g~~l~-----~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPA-ANIKWRKGDQELE-----GA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCC-CEeEEEECCEECC-----Cc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            7899999775322 3899999998642     11 1122  223 2444433     55566667999999997543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.58  E-value=2.6e-07  Score=59.97  Aligned_cols=72  Identities=21%  Similarity=0.313  Sum_probs=50.0

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee--------eeccCCcEEEcc---CC--cEEEeecCCCCCCeeeE
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS--------IIHSGGRYSITT---AG--ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~--------~~~~~~r~~v~~---~G--~L~I~~v~~~D~gg~Y~   84 (114)
                      .+.+|++|.|+|......... .+.|.|......+.        .....+||.+..   +|  .|.|++++.+|+| .|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~-~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG-~Y~   80 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSY-EKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAG-WYW   80 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCc-EeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCE-EEE
Confidence            578999999999975422222 78999975321000        012357888742   23  6999999999995 999


Q ss_pred             EEEeecc
Q psy9140          85 CQTTHKL   91 (114)
Q Consensus        85 C~a~n~l   91 (114)
                      |.+.+..
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9998753

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.55  E-value=4.1e-07  Score=60.83  Aligned_cols=83  Identities=18%  Similarity=0.268  Sum_probs=55.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeecc--CCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHS--GGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~--~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +..++.+....+.+|+...|.|.+++..+... .|.|+|++..+..-....  ...+.  ..-+|.+. +..+|.|..|+
T Consensus         2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~--~~stlt~~-~~r~D~g~~~s   78 (100)
T cd05755           2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVN--APATITIT-VDREDHGANFS   78 (100)
T ss_pred             ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCce--eEEEEEEe-cchhhCCcEEE
Confidence            34677888888999999999999976432222 589999998752110000  01111  12356665 67788888999


Q ss_pred             EEEeeccCC
Q psy9140          85 CQTTHKLTG   93 (114)
Q Consensus        85 C~a~n~l~~   93 (114)
                      |.|.+.|..
T Consensus        79 C~A~l~l~~   87 (100)
T cd05755          79 CETELDLRP   87 (100)
T ss_pred             EEEEeccCc
Confidence            999998754

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.53  E-value=1.3e-06  Score=57.81  Aligned_cols=68  Identities=22%  Similarity=0.328  Sum_probs=46.9

Q ss_pred             CeEEEEeecCCCCCCcc-eEEEeeCCe----eee-ee-----ee--ccCCcEEEc----cCCcEEEeecCCCCCCeeeEE
Q psy9140          23 NIAVLQCNIPAYNHNLL-LIAWLREGV----SEA-RS-----II--HSGGRYSIT----TAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~-~vsW~kd~~----~~~-~~-----~~--~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      +.+.|.|..+..  ..+ .++|.|-+.    .+. +.     ..  .-.+|....    .+++|.|+||+.+|+| .|+|
T Consensus         1 ~~vtL~C~~~~~--~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G-~Y~C   77 (96)
T cd05889           1 EKMKLECVYPKT--GVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVG-LYCC   77 (96)
T ss_pred             CCEEEEeEcCCC--CcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCE-EEEE
Confidence            368899998642  335 889999642    221 10     01  112566654    3689999999999995 9999


Q ss_pred             EEeeccCC
Q psy9140          86 QTTHKLTG   93 (114)
Q Consensus        86 ~a~n~l~~   93 (114)
                      ...+.-.|
T Consensus        78 ~~~t~P~g   85 (96)
T cd05889          78 SLVTYPQG   85 (96)
T ss_pred             EEEeCCCC
Confidence            99988766

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.50  E-value=1.1e-06  Score=57.40  Aligned_cols=65  Identities=17%  Similarity=0.265  Sum_probs=45.8

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee--eccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI--IHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~--~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      ...|.+|++|+|+|..+. ...  ...|+|++....+-.  ....+++    ...+.|.+++.+|+| .|+|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~--~f~l~k~g~~~~~~~~~~~~~~~~----~a~f~I~~~~~~~~G-~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFD--RFILYKEGRSKPVLHLYEKHHGGF----QASFPLGPVTPAHAG-TYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCC--EEEEEECCCCCCceecccccCCeE----EEEEEecCCCcccCE-EEEEEEE
Confidence            667889999999998754 112  789999987421000  0111334    237999999999995 9999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.50  E-value=3.1e-07  Score=60.64  Aligned_cols=75  Identities=16%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             ccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .|....+..|..|.|.|.+.+| -++.+.++|.||+.....     +....|+-|.+.  ..|.|..-++.+. -.|+|.
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w~~g-~~ysC~   81 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDWISG-DTFQCK   81 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHccCC-CcEEEE
Confidence            4444456679999999999888 444448999999753211     112335556554  3555555444343 589999


Q ss_pred             Eeec
Q psy9140          87 TTHK   90 (114)
Q Consensus        87 a~n~   90 (114)
                      +.|.
T Consensus        82 V~H~   85 (96)
T cd07696          82 VTHP   85 (96)
T ss_pred             EECC
Confidence            9996

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.45  E-value=2.6e-06  Score=62.76  Aligned_cols=90  Identities=17%  Similarity=0.247  Sum_probs=61.8

Q ss_pred             eeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeee-----eecc--CCcEEEc----cCCcEEEeecCCCCCCeee
Q psy9140          16 NTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARS-----IIHS--GGRYSIT----TAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~-----~~~~--~~r~~v~----~~G~L~I~~v~~~D~gg~Y   83 (114)
                      ..+|.+|+.|.|.|... +...+  .|.|.|..+.+..-     ....  .+|+.++    .+-.|.|.+|+.+|+| .|
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~--qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeG-cY  100 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSI--LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNG-CY  100 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccc--eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCe-EE
Confidence            45788999999999974 32122  89999986654311     1111  2477652    2457999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|....-..|. ..+..+-|.|+.+.
T Consensus       101 ~C~F~tfp~G~-~~~gt~CLtVt~~~  125 (189)
T PHA02987        101 TCIFNTLLSKN-NEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEEEecCCCC-CceeEEEEEEEchh
Confidence            99998776551 24557778777553

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.43  E-value=1.7e-06  Score=54.95  Aligned_cols=64  Identities=17%  Similarity=0.311  Sum_probs=39.2

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeee----eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARS----IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +.|.|.+.++-++ +.++|+|++..+...    ....++.|.+.  ..|.+ ..+.+|.|+.|+|.|.|..-
T Consensus         2 ~~L~C~~~~~~P~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--s~l~~-~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPA-ATIRWFKGDKELKGVKLKEEDENGKTFTVT--SSLRF-QVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcC-CeEEEEECCEEccCceeeEecCCCCEEEEE--EEEEE-EcchhhCCCEEEEEEeChhc
Confidence            6899999665222 289999999865200    01122344443  24444 45555656799999999743

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.39  E-value=1.3e-06  Score=59.13  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             eCCeEEEEeecC--CCC--CCcc-eEEEeeCC-----eeee-ee--------eeccCCcEEEcc------CCcEEEeecC
Q psy9140          21 RGNIAVLQCNIP--AYN--HNLL-LIAWLREG-----VSEA-RS--------IIHSGGRYSITT------AGALHIRDTG   75 (114)
Q Consensus        21 ~G~~AvL~C~~~--~~~--~~~~-~vsW~kd~-----~~~~-~~--------~~~~~~r~~v~~------~G~L~I~~v~   75 (114)
                      .|.+|.|+|...  +..  .+.. .|.|.|-.     .... +-        ...-.+|..+..      +-+|.|+|++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            388999999952  211  1112 89999851     2111 10        011246777743      3489999999


Q ss_pred             CCCCCeeeEEEEeecc
Q psy9140          76 MEDSYIRYYCQTTHKL   91 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l   91 (114)
                      .+|+| .|+|.+....
T Consensus        81 ~~D~G-~Y~C~v~~g~   95 (110)
T cd05902          81 YSDSG-TYRCEVVLGI   95 (110)
T ss_pred             HHHCE-EEEEEEEECC
Confidence            99995 9999999854

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.39  E-value=2.2e-06  Score=53.59  Aligned_cols=64  Identities=27%  Similarity=0.523  Sum_probs=42.0

Q ss_pred             eEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          24 IAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        24 ~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .|.|.|.+.+|-++.+.+.|+||+..+..      +....++.|.+.  ..|.|.....++. ..|+|.+.|.
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~-~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESG-DTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccCCCC-CEEEEEEEEc
Confidence            47899999777544348999999985321      011245556553  3566655555554 6999999986

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.38  E-value=2.3e-06  Score=57.94  Aligned_cols=79  Identities=13%  Similarity=0.293  Sum_probs=52.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee----eeccC-CcEEEccCCcEEEeecCCCCCCeee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS----IIHSG-GRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~----~~~~~-~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      ...+.+...+...|+.+.|.|.+.+|-++.+.++|+||+..+...    ....+ +.|.+.  -.|.+. ...+|.+..|
T Consensus         8 ~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~--S~L~~~-~~~~d~~~~y   84 (111)
T cd05772           8 VPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVT--STVQVK-LTEDDVHSQV   84 (111)
T ss_pred             CcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEE--EEEEEE-CccccccCce
Confidence            356666666777899999999998876544489999999875210    00112 245543  245555 3555554469


Q ss_pred             EEEEeec
Q psy9140          84 YCQTTHK   90 (114)
Q Consensus        84 ~C~a~n~   90 (114)
                      +|.+.|.
T Consensus        85 tC~V~H~   91 (111)
T cd05772          85 TCEVQHR   91 (111)
T ss_pred             EEEEEeC
Confidence            9999996

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.37  E-value=3.2e-06  Score=58.08  Aligned_cols=81  Identities=21%  Similarity=0.314  Sum_probs=50.2

Q ss_pred             CCeEEEEeecCCCC---------CCcceEEEeeCC---------eeeeeee--------eccCCcEEEc------cCCcE
Q psy9140          22 GNIAVLQCNIPAYN---------HNLLLIAWLREG---------VSEARSI--------IHSGGRYSIT------TAGAL   69 (114)
Q Consensus        22 G~~AvL~C~~~~~~---------~~~~~vsW~kd~---------~~~~~~~--------~~~~~r~~v~------~~G~L   69 (114)
                      |.+|+|+|.+...+         +++..|.|.|-.         +..++-.        ..-.+|..+.      .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            78999999983111         122289998841         1111000        1123577664      25689


Q ss_pred             EEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|++++.+|+| .|+|.+.+....   ......|.|+
T Consensus        82 ~i~~v~~sD~G-~Y~C~V~~g~~~---~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAG-VYRCEVMHGIED---TQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCE-EEEEEEEECCcc---cEEEEEEEEE
Confidence            99999999995 999999986543   2334455554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA03376 BARF1; Provisional

Probab=98.36  E-value=5.5e-06  Score=61.61  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             eEEEeCCeEEEEeecC-CCCCCcceEEEee----CCeeeee--------eeeccCCcEEEcc-CC--cEEEeecCCCCCC
Q psy9140          17 TFVLRGNIAVLQCNIP-AYNHNLLLIAWLR----EGVSEAR--------SIIHSGGRYSITT-AG--ALHIRDTGMEDSY   80 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~-~~~~~~~~vsW~k----d~~~~~~--------~~~~~~~r~~v~~-~G--~L~I~~v~~~D~g   80 (114)
                      ..+..|+.|+|.|.-. ...+....|.|+|    ++...+.        +-..--+|+.+.. +|  .|.|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            4577899999999984 3333323999999    4444432        1123356777732 23  6999999999995


Q ss_pred             eeeEEEEeeccCCcEEeCC-----CeEEEEec
Q psy9140          81 IRYYCQTTHKLTGERKISP-----PSQVMVSE  107 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~-----~a~L~V~~  107 (114)
                       +|+|.....-++..+..-     +-+|.|+.
T Consensus       101 -tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a  131 (221)
T PHA03376        101 -NYLCRMKLGETEVTKQEHLSVVKPLTLSVHS  131 (221)
T ss_pred             -eEEEEEEcCCCceeeeeeeeeeecceEEEEe
Confidence             999999987666554432     22366664

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.34  E-value=5.3e-06  Score=53.64  Aligned_cols=76  Identities=16%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeee---ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCe
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSII---HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPS  101 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~---~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a  101 (114)
                      +.|.|.+.++ +|...|+|+|++..+.....   ..+++|.+.  ..|.+ .++.+|.|..|+|+|.|+.-..  ....-
T Consensus         2 ~~L~C~s~gS-kP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~--S~L~~-~p~~eDdG~~~~C~a~~~~l~~--~~~~~   75 (82)
T cd05883           2 IELNCTAMAS-KPAATIRWFKGNKELTGKSTVEETWSRMFTVT--SQLML-KVTKEDDGVPVICLVDHPAVKD--LQTQR   75 (82)
T ss_pred             EEEEEEecCC-CCCCEEEEEECCEECcCcccceeccCCCcEEE--EEEEE-ECchhhCCCEEEEEEcCcccCC--ceeeE
Confidence            5699999765 23229999999987631100   122345554  46777 6777777889999999976432  33355


Q ss_pred             EEEEe
Q psy9140         102 QVMVS  106 (114)
Q Consensus       102 ~L~V~  106 (114)
                      .|.|.
T Consensus        76 ~L~V~   80 (82)
T cd05883          76 YLEVQ   80 (82)
T ss_pred             EEEEE
Confidence            55553

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.33  E-value=1.2e-06  Score=53.75  Aligned_cols=62  Identities=23%  Similarity=0.431  Sum_probs=41.4

Q ss_pred             eEEEEeecCCCCCCcc-eEEEeeCCe-----eeeeee--------eccCCcEEEccC-----CcEEEeecCCCCCCeeeE
Q psy9140          24 IAVLQCNIPAYNHNLL-LIAWLREGV-----SEARSI--------IHSGGRYSITTA-----GALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        24 ~AvL~C~~~~~~~~~~-~vsW~kd~~-----~~~~~~--------~~~~~r~~v~~~-----G~L~I~~v~~~D~gg~Y~   84 (114)
                      +|.|.|.......+ . .+.|++...     .++...        ....+||.+..+     ..|.|++++.+|+| .|.
T Consensus         1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~   78 (81)
T smart00406        1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTG-TYY   78 (81)
T ss_pred             CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCE-EEE
Confidence            57899998543332 2 789999652     111110        023579987643     36999999999995 999


Q ss_pred             EEE
Q psy9140          85 CQT   87 (114)
Q Consensus        85 C~a   87 (114)
                      |.+
T Consensus        79 C~v   81 (81)
T smart00406       79 CAV   81 (81)
T ss_pred             EcC
Confidence            963

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.32  E-value=2e-06  Score=57.03  Aligned_cols=69  Identities=17%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCee-------eeeeee----------ccCCcEEEccC---CcEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-------EARSII----------HSGGRYSITTA---GALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-------~~~~~~----------~~~~r~~v~~~---G~L~I~~v~~~   77 (114)
                      .|-+|++|.|.|........  .+.|+|-...       |+....          ...+||.+..+   -.|.|++++.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s   79 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPT--GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE   79 (104)
T ss_pred             cccCCCeEEEEEEecCCCCC--cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence            46689999999987432112  6899985432       221111          01468886432   26999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |+| .|.|.+.+
T Consensus        80 Dsg-tY~Ca~~~   90 (104)
T cd05720          80 NEG-YYFCSVAS   90 (104)
T ss_pred             HCE-EEEEEEcc
Confidence            995 99998874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.31  E-value=4.1e-06  Score=53.04  Aligned_cols=64  Identities=25%  Similarity=0.522  Sum_probs=46.6

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeee-----eeee-ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEA-----RSII-HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~-----~~~~-~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      |+.+.|.|.+.+|-+..+.|+|++++..+.     .... ..|+.|.+.  ..|.|.   +++ |..|+|.+.|.-
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~---~~~-~~~ysC~V~H~~   77 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVT--SSLTVT---WNS-GDEYSCRVTHES   77 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEE--EEEEEE---TTT-TGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeee--EEEEec---CCC-CCEEEEEEEECC
Confidence            899999999977655444899999998752     1112 467888776  467777   444 459999999963

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.31  E-value=4.7e-06  Score=53.48  Aligned_cols=63  Identities=14%  Similarity=0.302  Sum_probs=41.2

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      +.|.|.+.++-++ +.|+|+||+..+.-.     ....++.|.+.  -.|.|. .+.+|.|..|+|.|.|..
T Consensus         2 ~~LtC~a~gf~P~-~~itW~kng~~l~~~~~~~~~~~~~~t~~~~--s~L~~~-~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPA-ADIRWFKNDKEIKDVKYLKEEDANRKTFTVS--STLDFR-VDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCC-CEEEEEECCEECcCceeeEeeCCCCCEEEEE--EEEEEE-cccccCCCEEEEEEechh
Confidence            5799999776433 489999999975210     01234455543  356665 454555679999999964

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.30  E-value=4e-06  Score=55.20  Aligned_cols=64  Identities=17%  Similarity=0.346  Sum_probs=42.6

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee------eccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI------IHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~------~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      -.|..++|.|.+.+|-++.+.++|+|||..+. ..      .+.|+.|.+.  -.|.|   ..++. ..|+|.+.|.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~--s~l~~---~~~~~-~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLL--KSTEF---TPTKG-DEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEE--EEEEE---CCCCC-CeEEEEEEEC
Confidence            45788899999988765545889999998752 11      1334444443  12333   45555 4999999995

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.28  E-value=2.8e-06  Score=55.83  Aligned_cols=68  Identities=22%  Similarity=0.453  Sum_probs=45.8

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeee------eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA------RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~------~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..++.+.|.|.+.+|.++.+.++|+||+..+.      .+....++.|.+.  -.|.|..-++.+. ..|+|.+.|.
T Consensus        12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~-~~ytC~V~H~   85 (94)
T cd05847          12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSG-KTYTCKVTHQ   85 (94)
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhcCC-CeEEEEEEEC
Confidence            35677999999988765545899999998641      0112345566553  3566664444444 5999999996

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.25  E-value=1.9e-06  Score=58.85  Aligned_cols=71  Identities=15%  Similarity=0.279  Sum_probs=48.3

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeec-cCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIH-SGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~-~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ...+++.+.|.|.+.+|-+..+.++|+||+..+..      .... .++-|.+.  ..|.|.-.++.|.|..|+|.+.|.
T Consensus        14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~~~ytC~V~H~   91 (115)
T cd05769          14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPRNTFTCIVQFY   91 (115)
T ss_pred             HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCCCeEEEEEEEe
Confidence            34467889999999887655448999999976421      0111 12456554  467777666655456999999997

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.24  E-value=2e-06  Score=57.22  Aligned_cols=71  Identities=14%  Similarity=0.335  Sum_probs=44.8

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-------eeec--cCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-------SIIH--SGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-------~~~~--~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      ..+..|..|.|.|.+.+|-+..+.++|+||+..+--       +...  .|+-|.+.  -.|.|.--.+. .|..|+|.+
T Consensus        11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~-~~~~ytC~V   87 (102)
T cd05768          11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWN-AGDVFTCVV   87 (102)
T ss_pred             HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhc-CCCcEEEEe
Confidence            344568899999999887654448899999986410       0001  13455553  34655333333 345999999


Q ss_pred             eec
Q psy9140          88 THK   90 (114)
Q Consensus        88 ~n~   90 (114)
                      .|.
T Consensus        88 ~H~   90 (102)
T cd05768          88 GHE   90 (102)
T ss_pred             EeC
Confidence            995

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.23  E-value=2.5e-06  Score=56.42  Aligned_cols=69  Identities=20%  Similarity=0.413  Sum_probs=47.0

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..+|+.+.|.|.+.+|-+..+.++|+|||..+...      ....|+.|.+.  ..|.|..-.+.+ |..|+|.+.|.
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~-~~~~sC~V~H~   88 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNK-HKVYTCEVTHE   88 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHhCC-CCeEEEEEEec
Confidence            34788899999998875433489999999875210      11235666664  456665555544 46999999996

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG1480|consensus

Probab=98.18  E-value=5.1e-07  Score=77.73  Aligned_cols=85  Identities=18%  Similarity=0.278  Sum_probs=71.9

Q ss_pred             eeeccccceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140           2 NMGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSY   80 (114)
Q Consensus         2 ~~avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~g   80 (114)
                      ++|+++-.|+..|.-+.|-.+.+..|+|..|..  .+. .+.|+|++..+     ..+..+.....+.|.|.-+...|.|
T Consensus       124 r~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~--~paae~~w~k~e~~~-----~pd~n~~~~~d~~li~~~arlsd~~  196 (909)
T KOG1480|consen  124 RIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEG--DPKAEVEWLKNEVVI-----DPDANVIRASDHNLIISQARLSDSG  196 (909)
T ss_pred             HHHHHHHhhccChhhheecccccccccccCccc--chhhhhhccccCCCC-----CccccchhhhcCCccccchhhhhcc
Confidence            467888889999999999999999999997542  334 88999998753     4477777778999999999999996


Q ss_pred             eeeEEEEeeccCCc
Q psy9140          81 IRYYCQTTHKLTGE   94 (114)
Q Consensus        81 g~Y~C~a~n~l~~~   94 (114)
                       .|+|+|.|..+.+
T Consensus       197 -nytc~a~ni~~~r  209 (909)
T KOG1480|consen  197 -NYTCEATNIVAKR  209 (909)
T ss_pred             -cceeeeehhhccc
Confidence             9999999987764

>cd00096 Ig Immunoglobulin domain

Probab=98.18  E-value=6.2e-06  Score=46.82  Aligned_cols=64  Identities=23%  Similarity=0.403  Sum_probs=42.5

Q ss_pred             EEEEeecCCCCCCcceEEEeeCCeeeeeeee--ccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          25 AVLQCNIPAYNHNLLLIAWLREGVSEARSII--HSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        25 AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~--~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      +.|.|.+.+.  +...+.|.+++........  .............|.|.+++.+|+| .|.|.+.+..
T Consensus         1 ~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGP--PPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG-TYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCC--CCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCc-EEEEEEecCc
Confidence            4689999762  2228999998875421100  0112222334568999999999995 9999999863

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.16  E-value=4.4e-06  Score=55.80  Aligned_cols=76  Identities=21%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeCCeeee---eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~~~~~---~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      ..|.......|..|.|-|.+.+|- ...+.++|.+|++.-.   .+..+.|+-|.+.  ..|.|. .+....|..|+|.+
T Consensus         9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~--S~L~v~-~~~W~~g~~ytC~V   85 (99)
T cd04986           9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVS--SVLPGC-AEEWNKGEPFACTV   85 (99)
T ss_pred             ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEE--EEEEeC-HHHhcCCCeEEEEE
Confidence            345444555899999999998876 3334999999976421   1123447778775  577777 44445556899999


Q ss_pred             eec
Q psy9140          88 THK   90 (114)
Q Consensus        88 ~n~   90 (114)
                      .|.
T Consensus        86 ~H~   88 (99)
T cd04986          86 THP   88 (99)
T ss_pred             ECC
Confidence            986

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.15  E-value=1.8e-05  Score=51.30  Aligned_cols=66  Identities=21%  Similarity=0.445  Sum_probs=39.5

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEE---eecCCCCCCeeeEEEEeec
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHI---RDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I---~~v~~~D~gg~Y~C~a~n~   90 (114)
                      |+.+.|.|.+.+|.++.+.++|+|++..+..  ......+....+|...+   -.+..+|. +.|+|++.|.
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~--~~~~~~~~~~~d~ty~~~s~l~v~~~~~-~~ytC~V~H~   82 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVD--DVESGEILPNGDGTYQLWVTLEVPPEDK-ARYSCRVEHS   82 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcc--cccccceEECCCCeEEEEEEEEECCCCC-CEEEEEEEeC
Confidence            7889999999887544348999999863211  01112222233333222   12333465 5999999985

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.08  E-value=1.8e-05  Score=52.14  Aligned_cols=64  Identities=20%  Similarity=0.346  Sum_probs=43.4

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .|..+.|.|.+.+|-+..+.++|+|||..+.-      .....|+.|.+.  -.|.|..   ++. ..|+|.+.|.
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~~---~~~-~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNFTP---EEG-DIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEEEC---CCC-CeEEEEEEeC
Confidence            46678999999887655458899999986421      012345666664  3455543   343 5999999995

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.03  E-value=1.2e-05  Score=53.15  Aligned_cols=69  Identities=12%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .....|+.|+|-|.+.+|-++.+.++|+|||..+..     .....++.|.+.  -.|.|.   .++.|..|+|.+.|.
T Consensus        11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~--S~L~vt---~~~~~~~ysC~V~H~   84 (96)
T cd07697          11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTT--SWLTVT---KDSLGKKFRCIYKHE   84 (96)
T ss_pred             HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEE--EEEEEC---chhCCCeEEEEEEEC
Confidence            344467889999999887665558899999986421     111122355553  234444   332334799999994

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.01  E-value=4.6e-05  Score=49.93  Aligned_cols=65  Identities=18%  Similarity=0.349  Sum_probs=43.1

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..|..+.|.|.+.+|-++.+.++|+||+..+...      ....|+.|.+.  -.|.+.   .++. ..|+|.+.|.
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~--s~L~~~---~~~~-~~ysC~V~H~   82 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQIL--VMLETT---PSRG-DTYTCVVEHS   82 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEE--EEEEEc---CCCC-CEEEEEEEeC
Confidence            3689999999998876554488999999864210      01234455553  234433   3343 5999999995

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.97  E-value=4.2e-05  Score=50.35  Aligned_cols=67  Identities=18%  Similarity=0.413  Sum_probs=44.9

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeee----eeeec-cCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEA----RSIIH-SGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~----~~~~~-~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+..+.|-|.+.+|.++.+.++|+||+....    ++... .|+.|.+.  -.|.|..-++... ..|+|.+.|.
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~-~~ytC~V~H~   86 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNSTSGVKTYPAVLQSGGLYTAS--SQLTVPASEWKGK-ESFYCKVEHP   86 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEECCCcEECCCEeCCCCCEEEE--EEEEEeHHHcCCC-CcEEEEEEeC
Confidence            5677999999988765544899999998510    11122 26777664  3566555443333 4899999995

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.72  E-value=2.9e-05  Score=53.47  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|.|++|+.+|+| .|.|.+.+..+.   .+...+|.|..|+.+
T Consensus         2 sL~i~~v~~~D~G-~Y~C~~~~~~~~---~~~~~~l~v~~~P~v   41 (139)
T cd05771           2 SLTLPGLTVHDEG-TYICSVSTPPHQ---AQQIIQLSVSEPPRV   41 (139)
T ss_pred             eEEECCCCHHHCE-EEEEEEEccCcc---eeeEEEEEEecCCce
Confidence            6999999999995 999999986544   456778888877654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.67  E-value=0.00036  Score=44.13  Aligned_cols=66  Identities=21%  Similarity=0.409  Sum_probs=44.4

Q ss_pred             CCeEEEEeecCC-CCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          22 GNIAVLQCNIPA-YNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        22 G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      |..+.|.|.+.+ ++++  .|+|..++..+..     .....++.|.+.  -.|.+. ++.+|.+..++|.|.|..-
T Consensus        14 ~~~~~~~C~s~~~~P~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~~-~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPP--QITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTLT-PTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-E--EEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEEE-TTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCe--EEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEEE-cChHHCCeEEEEEEECCcc
Confidence            579999998743 3222  8999999987611     112334556554  356665 5667777899999999754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.27  E-value=0.0038  Score=40.95  Aligned_cols=63  Identities=17%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +..++.|++..|.|..++...|.+.|.|.--+...         ..... ...+|.+..++..|+| ..+|.+.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~---------~~~~~~~~ktL~~~qv~~qdSG-~WtC~V~   71 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKS---------KQILNQDKKTLNLVQLGPNDSG-TWDCIVS   71 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcc---------ceeccCCccEEEeceeCcccCC-EEEEEEE
Confidence            77999999999999997653332279997755421         11111 2458999999999996 9999996

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.26  E-value=0.0014  Score=43.21  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=39.2

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeee--eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEA--RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~--~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ...++.|.+.+. +|...|+|+++.....  .-....+++|.+.  ..|.+ -.+.+|.|..|+|++.|.
T Consensus        16 ~~~va~C~s~~g-kPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~-~P~~~d~Gk~ltC~v~h~   81 (95)
T cd07703          16 PVPVAKCVSANG-RPPARISWSSTLGGNANTTSKENGDGTVTVT--SEYSL-VPTPEANGKEVTCKVEHE   81 (95)
T ss_pred             ccEEEEEEcCCC-CCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCc
Confidence            357899998542 2322999999832211  0012234566554  34555 355666678999999996

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.21  E-value=0.0013  Score=40.78  Aligned_cols=53  Identities=13%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      -+-|.+++|.|-..   .+  .+.|.+++..+     ..+       +..|...|-. ++.| .|+|.+.+.
T Consensus         4 sisGTtVtlTCP~~---~~--~i~W~~n~~~~-----~g~-------~~~~~~~~~~-e~~G-~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLS---GD--DIKWKKNDQVS-----QGS-------DEKYLSLNHF-SSSG-YYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCC---CC--CceEEeCCccC-----CCC-------CceEEeeccC-CCCc-eEEEEeCCC
Confidence            36799999999532   12  48999998632     211       1123333444 7775 999999753

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.20  E-value=0.0021  Score=42.19  Aligned_cols=65  Identities=18%  Similarity=0.225  Sum_probs=38.1

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeee--eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEA--RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~--~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      ...++.|.+.+. +|...|+|.++-....  .-....++.|.+.  -.|.+ ..+.+|.|..|+|++.|..
T Consensus        16 ~~~va~C~s~~g-kP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~--S~l~~-~p~~~d~G~~~tC~v~h~~   82 (95)
T cd05719          16 PVTVATCVSANG-KPPATISWETTLGGEAETQSKENPNGTVTVT--SEYRL-VPSREANGKELTCVVSHPT   82 (95)
T ss_pred             ccEEEEEECCCC-cCCCEEEEEeCCCCcceeEeecCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCcc
Confidence            356899998432 2222999999822111  0012223445443  24555 4566677789999999964

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.08  E-value=0.0027  Score=42.45  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=42.4

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeCCeeeeeeeecc--CCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLREGVSEARSIIHS--GGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~~~~~~~~~~~--~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .+.+|..+.++|.+++.. .+...|.|+|++..+-.-+...  +.+=...++-.+.+.- +.+|.|..|+|+|.=.+.
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            357999999999996432 2223899999776431000000  0000001112344443 588888899999985554

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.70  E-value=0.0079  Score=41.25  Aligned_cols=76  Identities=11%  Similarity=0.192  Sum_probs=49.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeee-e--ee-------eeccCCcEEEcc--CC---cEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSE-A--RS-------IIHSGGRYSITT--AG---ALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~-~--~~-------~~~~~~r~~v~~--~G---~L~I~~v~   75 (114)
                      +++.-..+..|+++.|.|.+.++.-..- .++|.|..... .  -.       .....+||.+..  +.   .|+|.+++
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            3455567889999999999844332221 78999953321 0  00       012356776632  22   59999999


Q ss_pred             CCCCCeeeEEEEe
Q psy9140          76 MEDSYIRYYCQTT   88 (114)
Q Consensus        76 ~~D~gg~Y~C~a~   88 (114)
                      .+|.+ .|.|.-.
T Consensus        83 a~DTa-~Y~Ca~e   94 (115)
T cd05721          83 ANQTD-IYFCKIE   94 (115)
T ss_pred             HHHCe-EEEEEee
Confidence            99995 9999543

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.56  E-value=0.0038  Score=48.39  Aligned_cols=47  Identities=19%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          40 LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        40 ~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      .-.|.-+++.+    +...+++.|.++|.|.+.|.+++++| .|+|..+.+.
T Consensus        14 ~y~W~GP~g~~----l~gn~~~nIT~TG~L~~~~F~esmSG-~YTCtLsYk~   60 (271)
T PF07354_consen   14 TYLWTGPNGKP----LSGNSYVNITETGKLMFKNFQESMSG-SYTCTLSYKP   60 (271)
T ss_pred             ceEEECCCCcc----cCCCCeEEEccCceEEeeccccccCC-ceEEEEEEEe
Confidence            67999987753    34567999999999999999999996 9999999876

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.40  E-value=0.015  Score=40.73  Aligned_cols=70  Identities=14%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             EEEeCCeEEEEeecCCCCC-C-cc-eEEEeeCCeeeeeeeeccCCcE--------EE--ccCCc--EEEeecCCCCCCee
Q psy9140          18 FVLRGNIAVLQCNIPAYNH-N-LL-LIAWLREGVSEARSIIHSGGRY--------SI--TTAGA--LHIRDTGMEDSYIR   82 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~-~-~~-~vsW~kd~~~~~~~~~~~~~r~--------~v--~~~G~--L~I~~v~~~D~gg~   82 (114)
                      ...=+++++|+|.+..... + .. .|.|..++..+..- .....+.        .+  +-.|.  |.+...+.- . |.
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~-dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~-Gn   99 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIF-DGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-E-GN   99 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEE-ETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH---EE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEE-cCccceecccCccccchhHhhCCCEEEEEcchhcc-c-cc
Confidence            4455789999999943211 1 12 79999999876421 1111122        11  12443  888887766 4 59


Q ss_pred             eEEEEeec
Q psy9140          83 YYCQTTHK   90 (114)
Q Consensus        83 Y~C~a~n~   90 (114)
                      |+|.+.+.
T Consensus       100 YTCeVt~~  107 (130)
T PF08204_consen  100 YTCEVTEL  107 (130)
T ss_dssp             EEEEEEET
T ss_pred             eEEEEEec
Confidence            99999875

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.06  E-value=0.043  Score=36.44  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=43.6

Q ss_pred             EEEeCCeEEE-EeecCCCCCCcceEEEeeCCeeee--eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          18 FVLRGNIAVL-QCNIPAYNHNLLLIAWLREGVSEA--RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        18 ~v~~G~~AvL-~C~~~~~~~~~~~vsW~kd~~~~~--~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+.+|+...+ .|.+... +|...|+|+++.....  -.....++.|.+..  .|.+.-- .+|.|..++|++.|.
T Consensus        12 ~~~~g~~~~vA~C~sa~g-kPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S--~~~l~p~-r~d~G~~vtC~V~H~   83 (97)
T cd07704          12 LIDGGNGTTLAACCAAEG-RPAADVTWETNVYGTSESHSQEHPNGTTTVTS--EYIWVPS-RHANGHPLTCVVSHP   83 (97)
T ss_pred             EeecCcceeEEEEEccCC-ccCCEeEEeCCCCCccceeeecCCCCCEEEEE--EEEEEeC-HHHCCcEEEEEEeCc
Confidence            4668899989 9998432 3322999999843221  00123356666653  5666444 444557999999997

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=96.03  E-value=0.014  Score=46.79  Aligned_cols=23  Identities=13%  Similarity=0.303  Sum_probs=19.3

Q ss_pred             eEEEEeecCCCCCCcceEEEeeC
Q psy9140          24 IAVLQCNIPAYNHNLLLIAWLRE   46 (114)
Q Consensus        24 ~AvL~C~~~~~~~~~~~vsW~kd   46 (114)
                      .+.|+|.+.+|-+..+.++|+||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999888765558899999

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=95.41  E-value=0.076  Score=33.32  Aligned_cols=48  Identities=19%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      ..++|.|...    .  .|+|+| |..+..   . .       +-+|-+..+..+-. |.|.|.+.+
T Consensus         7 ~~V~L~C~~~----t--si~W~k-G~~~~~---~-~-------~~tlnLGs~~~DPR-G~Y~C~~s~   54 (69)
T cd07691           7 GKVFLKCNGA----T--NITWKK-GKEILE---V-S-------NTLLDLGSRINDPR-GTYSCKESE   54 (69)
T ss_pred             ceEEEEecCC----C--cEEEec-Cccccc---c-c-------ccEEeccCcccCCC-cceEecCcc
Confidence            4689999762    2  699999 443311   1 0       34566666666665 699999987

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG4597|consensus

Probab=95.39  E-value=0.029  Score=46.89  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEee---CCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR---EGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k---d~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      -|..+.|-.|.++.+.|.+-+.  ++.+|.|.|   +++.++-.....-+|-.+...+.|.|-|...+|+| -|+|.|.|
T Consensus       202 cpa~w~vg~wetcS~tCg~~G~--q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~-w~tCs~rc  278 (560)
T KOG4597|consen  202 CPAEWFVGDWETCSSTCGVQGR--QYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAG-WYTCSARC  278 (560)
T ss_pred             CcchhhcccchhhcccccccCC--cCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCC-ceeecccc
Confidence            3455678899999999998553  333899987   33333222223345666777889999999999996 99999999


Q ss_pred             ccC
Q psy9140          90 KLT   92 (114)
Q Consensus        90 ~l~   92 (114)
                      ..+
T Consensus       279 g~g  281 (560)
T KOG4597|consen  279 GAG  281 (560)
T ss_pred             ccc
Confidence            753

>PHA02633 hypothetical protein; Provisional

Probab=95.24  E-value=0.022  Score=35.14  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=22.1

Q ss_pred             cCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          65 TAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        65 ~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..+.|.|-++..+|+| .|.|+.+|.
T Consensus        16 ~~~nLwilpa~~sDSG-iYiC~~rn~   40 (63)
T PHA02633         16 NCNNMLILNPTQSDSG-IYMCITKNE   40 (63)
T ss_pred             ccccEEEeccccccCc-EEEEEEcCC
Confidence            3568999999999995 999999985

>PHA02982 hypothetical protein; Provisional

Probab=94.71  E-value=0.094  Score=39.86  Aligned_cols=74  Identities=9%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee------eecc--------CCcEEEcc---CCcEEEeecCC
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS------IIHS--------GGRYSITT---AGALHIRDTGM   76 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~------~~~~--------~~r~~v~~---~G~L~I~~v~~   76 (114)
                      -|..+..|+.+.|+|..|. . +-+ ...|.+++...+..      .++.        ...|.+.-   +.+|.|.++..
T Consensus        32 ~dv~a~vd~~V~L~C~~~~-~-~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i  109 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKD-A-DEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP  109 (251)
T ss_pred             hhhhccCCCcEEEEecCCC-c-chhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc
Confidence            3455778999999999654 2 334 77999987643320      0111        23444432   44799999999


Q ss_pred             CCCCeeeEEEEeecc
Q psy9140          77 EDSYIRYYCQTTHKL   91 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l   91 (114)
                      +..| =|+|.|+..-
T Consensus       110 ~N~G-CYtc~~ks~~  123 (251)
T PHA02982        110 QNLG-CFTCEAKDAE  123 (251)
T ss_pred             ccCC-ceEEEEecCC
Confidence            9995 9999999854

>PHA03042 CD47-like protein; Provisional

Probab=92.72  E-value=0.51  Score=36.98  Aligned_cols=64  Identities=16%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             EEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          18 FVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      .-.=.++++++|.++..-..  .- .+.|..+++.+..    .++- .   ..+|.......- . |.|+|.|.+..
T Consensus        27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~----~n~t-n---~aSL~~~f~~~l-~-GNYTCEv~~l~   93 (286)
T PHA03042         27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK----KNNT-N---TSSLKFNFSKNL-S-GNYTCEAINKF   93 (286)
T ss_pred             EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE----ecCC-c---ceEEEEeccccC-C-CceeEEEeecc
Confidence            34457899999998542111  12 7899999986521    1111 0   023554444333 3 59999999753

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.36  E-value=1.1  Score=29.11  Aligned_cols=70  Identities=14%  Similarity=0.256  Sum_probs=46.5

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCC--Ccc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCC-eeeEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNH--NLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSY-IRYYCQ   86 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~--~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~g-g~Y~C~   86 (114)
                      .+.|+...|-.|..+...|.+...-.  ... .|-|.-|++.      ....+|...+++...|+=......+ ..|.|.
T Consensus         7 ~i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~------iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen    7 VISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEK------IPGSQYRVINDTVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             EEECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCE------STCGCEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred             EEecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEE------CChhHcceeCCeEEEEEEccCCCCCceEEEEE
Confidence            57788999999999999999843222  223 7899998874      3578999998886554444444432 356665

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG3515|consensus

Probab=92.20  E-value=0.21  Score=43.82  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=56.8

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      -+..+.+|+.+.|.|.+.+.++.. .+.|++.+...     .  +||....+-.|.-.+... |.++.|.|+|.|..+.-
T Consensus        15 l~~~~~~g~~v~l~C~v~~~pp~~-~~eW~h~~~~~-----~--~~~~~~~~~~~~~~~~~~-~~~~~~~c~a~ns~~~~   85 (741)
T KOG3515|consen   15 LTVGLRLGEDVPLPCRVNSNPPEI-DVEWYHSTSGE-----H--GRYATIADPTLVTTGDVR-DTVAELNCRAFNSVGMP   85 (741)
T ss_pred             CChhhccCCcceeeeecCCCCCCc-ceEEEecCccc-----c--cccccccCCceeeecchh-hhhhhhhhhhcccccCc
Confidence            344678999999999997653322 89999998742     2  788777666666665544 55579999999985542


Q ss_pred             EEeCCCeEEEEecc
Q psy9140          95 RKISPPSQVMVSEI  108 (114)
Q Consensus        95 ~~~s~~a~L~V~~~  108 (114)
                        ...+-.+.|..+
T Consensus        86 --~~~~~~l~v~~~   97 (741)
T KOG3515|consen   86 --SRCPMILDVDYP   97 (741)
T ss_pred             --eecceeeccccC
Confidence              222555555533

>KOG3515|consensus

Probab=91.47  E-value=0.87  Score=40.09  Aligned_cols=85  Identities=15%  Similarity=0.240  Sum_probs=50.8

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccC-------CcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG-------GRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~-------~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ....+..+.+.|.+.....|...+.|..+.....+......       +.+. ...-.|.+...+++|.| .|+|.|.|.
T Consensus       108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~-t~~s~l~~~v~Rka~~g-~~tC~A~nr  185 (741)
T KOG3515|consen  108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY-TEPSLLKQTVSRKADNG-NYTCPANNR  185 (741)
T ss_pred             hhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCcee-ccccceeeEEEEecCCc-eeEcccccc
Confidence            35578888999965322222228899998876543221100       1111 11335889999999985 999999997


Q ss_pred             cCCcEEeCCCeEEEEe
Q psy9140          91 LTGERKISPPSQVMVS  106 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~  106 (114)
                      ++-.  .+..-.+.+.
T Consensus       186 ~s~~--l~~~~~~~i~  199 (741)
T KOG3515|consen  186 NSPG--LSFAKQLTII  199 (741)
T ss_pred             cCcc--ccccceeEee
Confidence            5532  4444444444

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=88.66  E-value=0.43  Score=32.42  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=25.6

Q ss_pred             CCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          58 GGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        58 ~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      ..||...+ +..|.|..++.+|+| .|.-.+++.-
T Consensus        61 n~r~~F~~enlaLlIkaAq~qDSG-~Y~LEvT~~s   94 (108)
T PF11465_consen   61 NNRFNFTSENLALLIKAAQPQDSG-LYCLEVTNES   94 (108)
T ss_dssp             HHHEEEETTTTEEEESS-SGGG-E-EEEEEEEETT
T ss_pred             cceEeeeccCceEEEeecCcccCc-eEEEEEEcCC
Confidence            46887764 889999999999995 9998888853

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=87.13  E-value=2.9  Score=34.73  Aligned_cols=78  Identities=13%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             eccceeEEEe-CCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee------------eeccCCcEEEc---------cCCc
Q psy9140          12 INTGNTFVLR-GNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS------------IIHSGGRYSIT---------TAGA   68 (114)
Q Consensus        12 v~~~d~~v~~-G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~------------~~~~~~r~~v~---------~~G~   68 (114)
                      -.|-|...++ |.++-|+|-...-.-+-+ .+.|...+-++-+.            ....+.-|.|.         -+.+
T Consensus       268 kk~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~ST  347 (500)
T PHA02914        268 KKKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNST  347 (500)
T ss_pred             ccccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhce
Confidence            3455555555 999999999743333445 78999887665211            11335566662         3567


Q ss_pred             EEEeecCCCCCCeeeEEEEeec
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      |.|.+|..+.+| =|.|.|...
T Consensus       348 LTIkka~I~N~G-CY~~~a~~g  368 (500)
T PHA02914        348 LTIKKAHINNAG-CYEAQAFMG  368 (500)
T ss_pred             EEeeeEEEEcCC-ceEEEEecC
Confidence            999999999995 999999863

>PHA03052 Hypothetical protein; Provisional

Probab=86.10  E-value=3.2  Score=25.96  Aligned_cols=49  Identities=16%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             cceeEEEeCCeEEEEeec-CCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEE
Q psy9140          14 TGNTFVLRGNIAVLQCNI-PAYNHNLL-LIAWLREGVSEARSIIHSGGRYSI   63 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~-~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v   63 (114)
                      |+-..+-.|..+.+.|.+ -+-+.. . .+-|.-++..+.......++|...
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~-~a~V~W~~N~~~~e~~d~~g~gRI~~   54 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTT-DADVFWISNGMYYEEDDDDGDGRISI   54 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCc-ceEEEEEeCCcEEeccccCCCcceEe
Confidence            444567899999999998 222223 3 889999998652222233556544

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=84.81  E-value=8.8  Score=25.15  Aligned_cols=85  Identities=16%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      ..+.|++..|-.|.++.+.|...=  ..+..+.|+-.=...   ....+..+.     .+.++||+. |.  .-.|.+.=
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC--~~p~~~GLET~L~k~---~~~~g~~W~-----~f~LsnV~~-ds--~~~C~~~C   72 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSC--PQPEKIGLETSLSKT---ELDSGPQWK-----AFQLSNVTE-DS--SPLCFFNC   72 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESS--SS-SEEEEESSSEEE---EEEEETTEE-----EEEEEEE-S-CE--EEEEEEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCCC--CCCCcceEEEecCCc---ccCCCCcEE-----EEEEEcccc-CC--eEEEEEEc
Confidence            358899999999999999999831  121144554321110   011122221     478899997 64  67899985


Q ss_pred             ccCCcEEeCCCeEEEEecccc
Q psy9140          90 KLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .  ++ +.+..++|+|..++.
T Consensus        73 ~--g~-Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   73 S--GE-QSSASANITVYKPPE   90 (91)
T ss_dssp             T--TE-EEEEEEEEEEEB--S
T ss_pred             C--Ce-EEEeEEeeEEeCCCC
Confidence            3  43 456688999987753

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>KOG3611|consensus

Probab=83.05  E-value=2.8  Score=36.99  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=43.5

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEe--eCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWL--REGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~--kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +++...+|.|...+..+   .+.|+  ..+...- .....+.+......|.|.+..++..|.| .|.|.+...
T Consensus       567 ~~~~~~~l~c~~~~~~a---~~~w~~~~~~~~~~-~~~~~~~~~~~~~~G~lll~~~q~~~~G-~y~c~~~e~  634 (737)
T KOG3611|consen  567 VLAGSEVLRCVPSSNQA---PVVWYHQSTKDGRK-EEVRQRDVVSRTDEGGLVLLSVQKLDGG-TYPCYADES  634 (737)
T ss_pred             cccccceeecccccccc---ceeeEeeccCcccc-ceeccCcceeecccCceeEEEEeeccCc-ccccccccC
Confidence            34446799998644322   46886  2221110 0234456666666799999999999985 999999964

>PHA03282 envelope glycoprotein E; Provisional

Probab=82.10  E-value=2.5  Score=35.58  Aligned_cols=46  Identities=17%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             CCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          58 GGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        58 ~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +.|..+. ||+|.|.+++.+|+| .|+-.+...-+.+ .......|.|.
T Consensus       116 ~~rvs~~-n~tl~l~~a~~~DsG-~Y~L~~~~~~~~~-~~~~~v~l~V~  161 (540)
T PHA03282        116 PPRVAVV-NGTLVLREARETDSG-MYVLSVSRAPNST-AARAVVFLVVG  161 (540)
T ss_pred             CcceeEe-cceEEEeeccccCCc-eEEEEecCCCCch-hheEEEEEEec
Confidence            5677666 899999999999995 9999876554332 23334455554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-14
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-12
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-12

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLI-AWLREGVSEARSII-----HSGGRYSI 63
           YE    N +V+RGN  V++C IP+Y  + + +  WL    SE R+        + G+Y +
Sbjct: 106 YESEADNEYVIRGNSVVMKCEIPSYVADFVFVDLWLD---SEGRNYYPNNAAETDGKYLV 162
Query: 64  TTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
             +G LHIR+ G ED Y  Y C+T H+LTGE ++S
Sbjct: 163 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 197

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
           YE +     V+RGN AV++C IP++  + + +++W  +            G+Y +  +G 
Sbjct: 112 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 171
Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
           LHIR+ G ED Y  Y C+T H+LTGE ++S
Sbjct: 172 LHIREVGPEDGYKSYQCRTKHRLTGETRLS 201

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
           YE +     V+RGN AV++C IP++  + + +++W  +            G+Y +  +G 
Sbjct: 106 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 165
Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
           LHIR+ G ED Y  Y C+T H+LTGE ++S
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLTGETRLS 195

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10  YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGA 68
           YE +     V+RGN AV++C IP++  + + +++W  +            G+Y +  +G 
Sbjct: 141 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 200
Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
           LHIR+ G ED Y  Y C+T H+LTGE ++S
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLS 230

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-17
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-08
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-05
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-05
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	6e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-04
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-04
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-04
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	6e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 77.3 bits (190), Expect = 3e-18
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 9   DYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAG 67
            YE +     V+RGN AV++C IP++  + + +++W  +            G+Y +  +G
Sbjct: 105 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG 164

Query: 68  ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
            LHIR+ G ED Y  Y C+T H+LTGE ++S     +V
Sbjct: 165 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 202

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.8 bits (181), Expect = 7e-17
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 9   DYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAG 67
            YE +     V+RGN AV++C IP++  + + +++W  +            G+Y +  +G
Sbjct: 140 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG 199

Query: 68  ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
            LHIR+ G ED Y  Y C+T H+LTGE ++S     +V  
Sbjct: 200 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 19  VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
           V RG   VL C  P +    L  AW+               R+     G L+I      D
Sbjct: 114 VRRGQGMVLLCGPPPH-SGELSYAWIFNE----YPSYQDNRRFVSQETGNLYIAKVEKSD 168

Query: 79  SYIRYYCQTTHKLTGERKISPPSQVMVSE 107
               Y C  T+ +T  + + PP+ +++  
Sbjct: 169 VG-NYTCVVTNTVTNHKVLGPPTPLILRN 196

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
              V  G    LQCN P       +I W+          I    R S    G L+  +  
Sbjct: 125 PVVVQEGAPLTLQCNPPPG-LPSPVIFWMSSS----MEPITQDKRVSQGHNGDLYFSNVM 179

Query: 76  MEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
           ++D    Y C      T   +   P  + V
Sbjct: 180 LQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 19  VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
           V  G   VL C+ P +  + L   WL         I     R+   T G L+I +    D
Sbjct: 20  VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFP--VFITMDKRRFVSQTNGNLYIANVEASD 77

Query: 79  SYIRYYCQTTHKLTGERKISPPSQVMV 105
               Y C  +     +   S    ++ 
Sbjct: 78  KG-NYSCFVSSPSITKSVFSKFIPLIP 103

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 51.0 bits (122), Expect = 5e-09
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 19  VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
           +  G   +  C+ P +   L    WL         I   G R+   T G L+I  T   D
Sbjct: 113 ITEGWGVMFTCSPPPHYPALS-YRWLLNEFPN--FIPADGRRFVSQTTGNLYIAKTEASD 169

Query: 79  SYIRYYCQTTHKL--TGERKISPPSQVMVS 106
               Y C  T  +    +   S  SQ+ ++
Sbjct: 170 LG-NYSCFATSHIDFITKSVFSKFSQLSLA 198

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 5/100 (5%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSITTAGALHIRD 73
               + G    L C +P      L I W +          +     R +    G L+   
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPL-ITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167

Query: 74  TGMEDSYI--RYYCQTTHKLTGERKISPPSQVMVSEIALP 111
              ED     +Y C   +    E  +    ++        
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.5 bits (95), Expect = 7e-06
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 16/69 (23%)

Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
          N  +     A+L+C       P        I+WL+EG     +      R +I   G L 
Sbjct: 17 NQTLAVDGTALLKCKATGDPLPV-------ISWLKEG----FTFPGRDPRATIQEQGTLQ 65

Query: 71 IRDTGMEDS 79
          I++  + D+
Sbjct: 66 IKNLRISDT 74

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 41.8 bits (98), Expect = 8e-06
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV---SEARSIIHSGGRYSITTAGALHIR 72
           +T V +G  A+L+C  P        + W+++GV           +  R  I   G L I 
Sbjct: 117 DTRVAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175

Query: 73  DTGMEDS 79
           +    D 
Sbjct: 176 NVEPIDE 182

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 13/67 (19%)

Query: 16  NTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR 72
           N +         +C +   P        + W++ G      ++     + I     L I 
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPT-----VNWMKNGD-----VVIPSDYFQIVGGSNLRIL 370

Query: 73  DTGMEDS 79
                D 
Sbjct: 371 GVVKSDE 377

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 16/69 (23%)

Query: 16 NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
          N  V      VL C       P        I W ++G      +     R      G L 
Sbjct: 17 NQTVAVDGTFVLSCVATGSPVPT-------ILWRKDG----VLVSTQDSRIKQLENGVLQ 65

Query: 71 IRDTGMEDS 79
          IR   + D+
Sbjct: 66 IRYAKLGDT 74

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 18/76 (23%)

Query: 16  NTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALH 70
           N  ++ G  AVL C       P+       ++W++       S +    R ++  +G+L 
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPS-------VSWIKGD-----SALRENSRIAVLESGSLR 156

Query: 71  IRDTGMEDSYIRYYCQ 86
           I +   ED+  +Y C 
Sbjct: 157 IHNVQKEDAG-QYRCV 171

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 27/119 (22%)

Query: 19  VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGG------------------R 60
           V+RG   +L C      H+  ++ W     S AR  + S                     
Sbjct: 12  VMRGKSVILDCTPTG-THDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP 70

Query: 61  YSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERK-------ISPPSQVMVSEIALPL 112
           Y + + G L + +  + D    Y C       G  +        + P    VS     L
Sbjct: 71  YQLDSQGRLVLAEAQVGDER-DYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 23/107 (21%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA----LHI 71
               LRG +  ++   P       +I W +        +I + G Y +    +    +  
Sbjct: 113 AVHALRGEVVSIKI--PFSGKPDPVITWQKGQD-----LIDNNGHYQVIVTRSFTSLVFP 165

Query: 72  RDTGMEDSYIRYYCQTTHKLTGERKIS----------PPSQVMVSEI 108
                +D+   Y     ++  G  + +          PP  V VS++
Sbjct: 166 NGVERKDAG-FYVVCAKNRF-GIDQKTVELDVADVPDPPRGVKVSDV 210

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
              V+ G  AVL C I         ++ +REG       +     Y  +      IR   
Sbjct: 98  EVTVVEGQEAVLPCLITDPALKDS-VSLMREG----GRQVLRKTVYFFSPWRGFIIRKAK 152

Query: 76  MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL 110
           + DS   Y C+T     G    S    + V+ +  
Sbjct: 153 VLDSNT-YVCKTMVN--GRESTSTGIWLKVNRVHP 184

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N Length = 113

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 22 GNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-SIIHSGGRYSITTAGA-----LHIRDTG 75
          G    + C +   ++ L    W R+   E     I  GGRY  T         L I D  
Sbjct: 15 GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLT 74

Query: 76 MEDSYIRYYCQ 86
          +ED    Y C 
Sbjct: 75 VEDGGT-YRCG 84

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA----GALHI 71
             +  G      C +   +     I+W          +  +  R S+         L I
Sbjct: 11 QGEISVGESKFFLCQVAG-DAKDKDISWFSPN---GEKLSPNQQRISVVWNDDDSSTLTI 66

Query: 72 RDTGMEDSYIRYYCQ 86
           +  ++D+   Y C 
Sbjct: 67 YNANIDDA-GIYKCV 80

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 38.3 bits (89), Expect = 7e-05
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 11/80 (13%)

Query: 16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-------AGA 68
              L G    ++C I +       IAW  +          + GRY++ T          
Sbjct: 22 TQHALHGEKGQIKCFIRS-TPPPDRIAWSWKEN---VLESGTSGRYTVETISTEEGVIST 77

Query: 69 LHIRDTGMEDSYIRYYCQTT 88
          L I +    D    Y C   
Sbjct: 78 LTISNIVRADFQTIYNCTAW 97

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 17/94 (18%)

Query: 19  VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHS--------------GGRYSIT 64
           V  G   +L  +      +L   +W +    +    I                 GR  I 
Sbjct: 11  VAEGKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY 68

Query: 65  TAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
              +L I++    D+   Y            + +
Sbjct: 69  PNASLLIQNIIQNDT-GFYTLHVIKSDLVNEEAT 101

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-------SEARSIIHSGGRYSITTAGA 68
           N    RG    L+C +         + WLR+G        ++ +  +    +        
Sbjct: 11  NITGARGLTGTLRCQLQV-QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ 69

Query: 69  LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE 107
           L I    + D+  +Y C           +S P  V +  
Sbjct: 70  LRITSLQLSDT-GQYQCLVFLGH-QTF-VSQPGYVGLEG 105

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG--------GRYSITT 65
          TGN    +G   +LQC++ +    +  + W ++    A      G         R +   
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69

Query: 66 AGALHIRDTGMEDSYIRYYCQ 86
             L ++   + D+   Y+C 
Sbjct: 70 GLGLTLQSLTVNDTGE-YFCI 89

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSIIHSGGRYSITTAGALH 70
            +    GN AVL C+    +       W ++G+      ++     +       T G L 
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSE-YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 174

Query: 71  IRDTGMEDSYIRYYCQ 86
                  D+   Y C+
Sbjct: 175 FDPLSASDTG-EYSCE 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 16  NTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR 72
                 G  AV+ C++            I W  +G      I+    R+ + +   L IR
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPT-----IIWKHKGRDV---ILKKDVRFIVLSNNYLQIR 160

Query: 73  DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV 105
                D    Y C+      GE       QV+V
Sbjct: 161 GIKKTDEGT-YRCEGRILARGEINFKDI-QVIV 191

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 16/76 (21%)

Query: 15 GNTFVLRGNIAVLQCNI--------PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA 66
          G++  L      +Q             Y    L + W   G +     I    R      
Sbjct: 1  GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA-----IRYSDRVKTGVT 55

Query: 67 G---ALHIRDTGMEDS 79
          G    L I +    D 
Sbjct: 56 GEQIWLQINEPTPNDK 71

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT---TAGALHIR 72
           +   + G    LQ          + +AW ++       I+       I+       L   
Sbjct: 486 DISTVVGEEVQLQAT--IEGAEPISVAWFKDK----GEIVRESDNIWISYSENIATLQFS 539

Query: 73  DTGMEDSYIRYYCQ 86
                ++  +Y CQ
Sbjct: 540 RAEPANAG-KYTCQ 552

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA---LHIR 72
               L+G    L+C +         ++W ++        + SG +Y I +      +HI 
Sbjct: 201 PVETLKGADVHLECELQGT--PPFQVSWHKDK-----RELRSGKKYKIMSENFLTSIHIL 253

Query: 73  DTGMEDS 79
           +    D 
Sbjct: 254 NVDSADI 260

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 20/96 (20%)

Query: 19  VLRGNIAVLQCNIPAYNHN---LLLIAWLREGVSEARSIIHSG--------GRYSITTA- 66
              G+   L C +   N     +  + W R G S + ++ H           R     A 
Sbjct: 12  GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71

Query: 67  -------GALHIRDTGMEDSYIRYYCQTTHKLTGER 95
                   +L +    +ED    Y C       G R
Sbjct: 72  LGAELRNASLRMFGLRVEDEG-NYTCLFVTFPQGSR 106

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
           +  V  G  AV++C  P   H    I+W ++G       +           G L I  T 
Sbjct: 120 DVMVAVGEPAVMECQ-PPRGHPEPTISWKKDGS-----PLDDKDERITIRGGKLMITYTR 173

Query: 76  MEDS 79
             D+
Sbjct: 174 KSDA 177

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 12  INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV---SEARSIIHSGGRYSITTAGA 68
           ++  +  +  G    + C I   + ++    W RE      + +      G ++      
Sbjct: 216 VSKASYLLREGEEFTVTCTIKDVSSSVY-STWKRENSQTKLQEKYNSWHHGDFNYERQAT 274

Query: 69  LHIRDTGMEDSYIRYYCQ 86
           L I    + DS + + C 
Sbjct: 275 LTISSARVNDSGV-FMCY 291

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 7   SSDYEINTGNTFVLRGNIAVLQCNIPAYNHN-----LLLIAWLREGVSEARSIIHSGGRY 61
                 +    F L G    L+C    Y         + + W +     AR++       
Sbjct: 18  CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND--SARTVPGEEETR 75

Query: 62  SITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKIS 98
                GAL +     EDS   Y C T +  +   K+S
Sbjct: 76  MWAQDGALWLLPALQEDS-GTYVCTTRNA-SYCDKMS 110

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 8/93 (8%)

Query: 16  NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG 75
              V     A+L C +         ++ +R         +     YS +      I    
Sbjct: 98  EVVVFEDQDALLPCLLTDPVLEAG-VSLVRVRGR----PLMRHTNYSFSPWHGFTIHRAK 152

Query: 76  MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI 108
              S   Y C       G + +S   ++ V ++
Sbjct: 153 FIQS-QDYQCSALMG--GRKVMSISIRLKVQKV 182

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 35.7 bits (82), Expect = 6e-04
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 15/82 (18%)

Query: 19 VLRGNIAVLQCNI--PAYNHNLLLIAWLREGVSEARSIIHSGGRYS------------IT 64
           L G+ A L C+         +  + W R+ V   + + +    +               
Sbjct: 19 TLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHD 78

Query: 65 TAGALHIRDTGMEDSYIRYYCQ 86
              LHIRD    D+ I Y C+
Sbjct: 79 HQAELHIRDVRGHDASI-YVCR 99

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 6/80 (7%)

Query: 11  EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV----SEARSIIHSGGRYSITTA 66
           +      F+  G    ++C     NH    + W  E           +       ++   
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRI 289

Query: 67  GALHIRDTGMEDSYIRYYCQ 86
               +      D+   Y C 
Sbjct: 290 LFAFVSSVARNDTG-YYTCS 308

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 7/95 (7%)

Query: 19  VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMED 78
             +    V+ C     N N+ L A   E        +  G R S  +     I    +  
Sbjct: 140 ENKNKTVVIPCLGSISNLNVSLCARYPEKR-----FVPDGNRISWDSKKGFTIPSYMISY 194

Query: 79  SYIRYYCQTTHKLTGERKISPPSQVMVSEIALPLK 113
           +    +C+         +      V+V      + 
Sbjct: 195 A-GMVFCEAKIN-DESYQSIMYIVVVVGYRIYDVV 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.8
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.8
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.78
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.77
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.76
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.76
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.74
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.74
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.73
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.73
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.72
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.72
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.72
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.72
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.72
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.71
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.71
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.71
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.7
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.7
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.7
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.69
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.69
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.69
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.68
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.68
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.68
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.67
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.67
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.67
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.67
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.66
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.65
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.65
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.65
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.65
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.65
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.65
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.64
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.64
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.64
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.64
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.64
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.64
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.63
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.63
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.63
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.63
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.63
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.63
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.62
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.62
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.62
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.62
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.61
2ens_A	96	Advanced glycosylation END product-specific recept	99.61
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.61
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.61
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.6
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.6
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.59
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.59
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.59
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.58
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.58
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.57
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.57
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.57
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.57
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.57
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.56
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.56
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.56
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.56
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.56
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.56
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.56
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.55
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.55
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.55
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.55
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.54
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.53
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.53
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.53
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.53
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.52
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.52
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.51
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.51
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.51
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.51
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.51
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.51
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.51
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.51
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.5
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.5
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.5
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.5
3khq_A	133	B-cell antigen receptor complex-associated protei	99.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.49
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.49
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.49
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.48
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.48
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.48
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.47
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.47
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.47
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.47
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.47
1he7_A	126	High affinity nerve growth factor receptor; transf	99.47
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.47
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.47
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.47
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.47
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.46
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.46
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.46
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.46
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.46
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.46
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.45
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.45
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.45
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.45
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.45
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.44
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.44
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.44
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.44
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.44
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.44
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.44
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.43
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.43
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.43
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.43
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.42
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.42
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.42
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.42
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.42
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.42
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.41
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.41
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.41
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.41
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.41
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.41
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.41
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.41
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.41
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.41
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.41
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.41
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.41
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.4
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.4
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.4
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.4
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.4
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.4
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.4
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.4
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.4
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.4
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.4
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.4
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.39
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.39
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.39
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.39
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.39
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.39
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.39
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.38
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.38
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.38
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.38
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.38
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.38
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.38
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.38
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.38
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.37
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.37
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.37
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.37
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.37
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.37
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.37
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.37
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.37
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.37
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.36
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.36
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.36
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.36
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.36
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.36
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.36
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.36
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.36
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.35
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.35
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.35
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.35
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.35
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.35
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.35
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.35
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.35
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.35
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.35
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.35
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.35
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.34
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.34
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.34
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.34
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.34
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.34
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.34
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.34
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.33
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.33
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.33
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.33
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.33
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.33
1xt5_A	135	Variable region-containing chitin-binding protein	99.33
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.33
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.33
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.33
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.32
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	99.32
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.32
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.32
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.32
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.32
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.32
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.32
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.32
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.31
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.31
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.31
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.31
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.31
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.31
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.31
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.31
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.3
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.3
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.3
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.3
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.3
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.3
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.3
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	99.3
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.3
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.29
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.29
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.29
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.29
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.29
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.29
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.29
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.29
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.29
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.29
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.28
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.28
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.28
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.28
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.28
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.28
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.28
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.28
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.28
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.28
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.28
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.27
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.27
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.27
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.27
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.93
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.27
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.27
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.27
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.27
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	99.27
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.26
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.26
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.26
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.26
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.26
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.26
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.26
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.26
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.26
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.26
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.26
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.26
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.26
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.26
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.25
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	99.25
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.25
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	99.25
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.25
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.25
3kg5_A	134	B-cell antigen receptor complex-associated protei	99.25
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.24
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.24
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.24
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	99.24
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.24
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.24
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.24
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.23
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.23
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	99.23
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.23
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.23
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.23
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	99.23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.23
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.23
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.22
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.22
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.22
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.22
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.22
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.22
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.22
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.22
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.22
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.22
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.22
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.22
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.22
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.22
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.21
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.21
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.21
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.21
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	99.21
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.21
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.2
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.2
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.2
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.2
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.2
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.2
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.2
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.2
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.19
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.19
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.19
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.19
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	99.19
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.19
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.18
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	99.18
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.18
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	99.18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.18
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.18
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.17
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.17
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.17
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	99.17
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.17
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.17
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.16
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.16
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	99.16
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.16
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.15
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.15
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.15
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	99.14
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.14
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.14
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	99.14
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	99.14
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.14
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.14
1p4b_L	135	Antibody variable light chain; FV antibody, antige	99.14
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.13
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.13
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.13
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.13
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.13
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.12
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.12
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.12
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	99.12
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	99.12
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.11
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	99.11
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	99.1
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	99.1
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.09
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.09
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.09
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	99.09
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.09
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.09
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.09
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	99.09
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.09
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	99.08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.08
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.08
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.08
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.08
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	99.07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.07
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	99.07
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.07
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	99.07
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.07
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.07
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	99.07
2otu_A	115	FV light chain variable domain; antibody FV polygl	99.06
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.06
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	99.06
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	99.05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.05
3b9v_A	120	Heavy chain variable domain; antibody engineering,	99.05
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	99.05
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.05
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.05
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.04
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.04
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	99.04
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.04
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.04
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.03
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	99.03
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	99.03
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.02
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	99.02
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.02
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	99.02
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	99.02
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.02
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.02
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	99.01
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.01
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.01
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.0
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	98.99
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.99
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.99
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	98.98
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.98
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.98
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	98.98
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.98
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	98.98
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.98
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.97
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.97
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.97
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.97
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.97
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.97
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.96
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.96
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.96
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.95
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.95
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.95
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.95
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.95
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.94
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.92
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.92

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.80  E-value=6.4e-20  Score=120.77  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=76.8

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...|++..+.+|+++.|.|.+.+.+.+  .++|+||+..|     ..+.||.+..+|   .|.|.+++.+|+| .|
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y   84 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQL-----AASERLSFPADGAEHGLLLTAALPTDAG-VY   84 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEEC-----CCCSSEECCEETTEEEEEESSCCGGGCE-EE
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEecCC--EEEEEECcccc-----cceeeEEEeecCceEEEEEecCChhhCE-EE
Confidence            4669999999999999999999999776555  89999999854     567899887655   6999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|.|.|.++.   .+..++|.|.+|+
T Consensus        85 ~C~a~N~~G~---~~~~~~l~V~~pP  107 (107)
T 3knb_B           85 VCRARNAAGE---AYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEEETTEE---EEEEEEEEEEC--
T ss_pred             EEEEEECCCE---EEEEEEEEEEcCC
Confidence            9999999764   4557899998864

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.80  E-value=1.1e-19  Score=118.08  Aligned_cols=93  Identities=15%  Similarity=0.243  Sum_probs=76.9

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~   82 (114)
                      +.|.|...|++..+.+|+++.|.|.+.+.+.+  .++|+||+..+   ....+.||.+..++   .|.|.+++.+|+| .
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p--~v~W~k~g~~i---~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~   77 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTP--EVTWSCGGRKI---HSQEQGRFHIENTDDLTTLIIMDVQKQDGG-L   77 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCC--EEEEEETTEEC---CTTGGGTEEEEECSSEEEEEESSCCGGGCE-E
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCC--EEEEEECceEe---eeeccceeeeecccceEEEEEcCCCccCCE-E
Confidence            45778899999999999999999999776555  89999999875   23345789887655   6999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+|.|.|..+.   .+..++|.|++
T Consensus        78 Y~C~a~N~~G~---~~~~~~l~V~~   99 (100)
T 3knb_A           78 YTLSLGNEFGS---DSATVNIHIRS   99 (100)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEEC
T ss_pred             EEEEEEECCCE---EEEEEEEEEEE
Confidence            99999999764   46678888874

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=2.3e-18  Score=109.65  Aligned_cols=92  Identities=23%  Similarity=0.315  Sum_probs=78.9

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .+.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+    ...+.||.+..+|.|.|.+++.+|+| .|+|.
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p--~v~W~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~   80 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDPLP--VISWLKEGFTF----PGRDPRATIQEQGTLQIKNLRISDTG-TYTCV   80 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSSCC--EEEEEESSSEE----SSSCSSCEECTTCCEEEESCCTTTCC-EEEEE
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCC--EEEEEECCEEC----CCCCCCEEEcCCCEEEEccCCcccCE-EEEEE
Confidence            4568889999999999999999999776544  79999999864    23578999999999999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.|..+.   .+..+.|.|.++
T Consensus        81 a~n~~g~---~~~~~~l~V~~~   99 (100)
T 2edj_A           81 ATSSSGE---TSWSAVLDVTES   99 (100)
T ss_dssp             EECSSCC---CBCCEEEEEESC
T ss_pred             EEcCCCC---EEEEEEEEEecC
Confidence            9999764   477899999876

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=112.90  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...++|..+.+|++|.|.|.+  .+.+  .+.|+||+..+     ..++||.+..+|   .|.|.+++.+|+| .|+
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~v--~p~p--~v~W~k~g~~l-----~~~~r~~i~~~~~~~~L~I~~v~~~D~G-~Y~   77 (100)
T 2yuz_A            8 LKILTPLTDQTVNLGKEICLKCEI--SENI--PGKWTKNGLPV-----QESDRLKVVQKGRIHKLVIANALTEDEG-DYV   77 (100)
T ss_dssp             CCCSBCCCCEEEETTSCCCEEEEC--SSCC--CEEEEETTEEC-----CCCSSEEEEECSSEEEEEESSCCGGGCS-EEE
T ss_pred             CEEeccCCceEEcCCCCEEEEEEe--CCCC--eEEEEECCEEC-----CCCCcEEEEEeCCEEEEEECCCChhhCE-EEE
Confidence            568889999999999999999998  3333  78999999854     567899998777   6999999999996 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |.|.|.     ..+..|+|.|.+|+..
T Consensus        78 C~a~N~-----~~~~~a~L~V~~~P~s   99 (100)
T 2yuz_A           78 FAPDAY-----NVTLPAKVHVISGPSS   99 (100)
T ss_dssp             EEESSS-----CCCEEEEEEEECCSCC
T ss_pred             EEEcCC-----CeeEEEEEEEeCCCCC
Confidence            999996     2567899999998753

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=3.3e-18  Score=112.26  Aligned_cols=96  Identities=22%  Similarity=0.270  Sum_probs=80.1

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ..+.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+    ...+.||.+..+|.|.|.+++.+|+| .|+|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p--~i~W~k~g~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   79 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVP--TILWRKDGVLV----STQDSRIKQLENGVLQIRYAKLGDTG-RYTC   79 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCC--EEEEEESSSBC----CTTSTTEEEEETTEEEEESCCGGGCC-CEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCC--EEEEEECCEEC----cCCCCeEEEccCCEEEEccCCcCCCE-EEEE
Confidence            34678889999999999999999999776544  89999998854    23578999999999999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|.|..+.   .+..+.|.|.++..+
T Consensus        80 ~a~n~~g~---~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           80 IASTPSGE---ATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EEECSSCE---EEEECCEEEECCSCC
T ss_pred             EEEcCCCc---EEEEEEEEEEeCCCC
Confidence            99998764   455678999877654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.76  E-value=2e-18  Score=111.03  Aligned_cols=86  Identities=14%  Similarity=0.155  Sum_probs=71.5

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...++|..|.+|++|.|.|.+.+.  + +.+.|+||+..+     ..++||.+..+|   .|.|.+++.+|+| .|
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~~--~-~~v~W~k~g~~i-----~~~~~~~i~~~g~~~~L~I~~v~~~D~G-~Y   75 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSEP--D-VHGQWKLKGQPL-----AASPDCEIIEDGKKHILILHNCQLGMTG-EV   75 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESSS--S-CCCEEEETTEEC-----CCBTTEEEEEETTEEEEEECSCCGGGCE-EE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECCC--C-CeEEEEECCEEC-----cCCCCEEEEEECCEEEEEECCCChhhCE-EE
Confidence            3568889999999999999999999542  2 278999999854     456799888776   6999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.|.|.       +..|+|.|+++
T Consensus        76 ~C~a~n~-------~~sa~L~V~~~   93 (93)
T 1waa_A           76 SFQAANT-------KSAANLKVKEL   93 (93)
T ss_dssp             EEEETTE-------EEEEEEEEECC
T ss_pred             EEEECCC-------cEEEEEEEEcC
Confidence            9999984       34789999875

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.74  E-value=8e-18  Score=111.16  Aligned_cols=98  Identities=17%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             eccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCC
Q psy9140           4 GDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDS   79 (114)
Q Consensus         4 avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~   79 (114)
                      +...+.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+    ...+.||.+..++    .|.|.+++.+|+
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p--~v~W~k~~~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   85 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPP--KLFWKRNNEMV----QFNTDRISLYQDNTGRVTLLIKDVNKKDA   85 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCC--EEEEEETTEEC----CCCBTTEEEEECTTCEEEEEEEEECGGGC
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCC--EEEEEECCEEC----cCCCCeEEEEeCCCCeEEEEECCCCcccC
Confidence            3456789999999999999999999999876554  89999999864    2246789887654    799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      | .|+|.|.|..+.   .+..+.|.|.+++..
T Consensus        86 G-~Y~C~a~N~~G~---~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           86 G-WYTVSAVNEAGV---TTCNTRLDVTARPNQ  113 (116)
T ss_dssp             E-EEEEEEEETTEE---EEEEEEEEEECCSCC
T ss_pred             E-EEEEEEEcCCCe---EEEEEEEEEeCCCCC
Confidence            5 999999998754   466889999977653

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.74  E-value=6.7e-18  Score=107.04  Aligned_cols=95  Identities=12%  Similarity=0.135  Sum_probs=74.9

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC--cEEEeecCCCCCCee
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G--~L~I~~v~~~D~gg~   82 (114)
                      ...+.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+   ......++....+|  .|.|.+++.+|+| .
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~g~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~   76 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP--DVSWYLNGRTV---QSDDLHKMIVSEKGLHSLIFEVVRASDAG-A   76 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECEEESCC--EEEEEETTEEE---CCCSSSCEEEETTTEEEEEESSCCGGGCE-E
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCC--EEEEEECCEEC---cCCCcEEEEEcCCCeEEEEECCCCcccCE-E
Confidence            455778889999999999999999999765444  89999999864   12223355555566  8999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |+|.|.|..+.   .+..+.|.|.+.
T Consensus        77 Y~C~a~n~~g~---~~~~~~l~V~~~   99 (100)
T 2kdg_A           77 YACVAKNRAGE---ATFTVQLDVLAK   99 (100)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEECC
T ss_pred             EEEEEEcCCCe---EEEEEEEEEEec
Confidence            99999998754   566888888764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.73  E-value=2.3e-17  Score=107.59  Aligned_cols=94  Identities=12%  Similarity=0.066  Sum_probs=77.3

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~   82 (114)
                      ..+.|...|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+     ..+.||.+..   ++.|.|.+++.+|+| .
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~k~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~   77 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQI-----QESEHMKVENSENGSKLTILAARQEHCG-C   77 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSC--EEEEEESSSBC-----CCSSSEEEEECSSEEEEEETTCCTTTCE-E
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCC--EEEEEECCEEC-----cCCCCEEEEEcCCEEEEEECCCChhcCE-E
Confidence            45678889999999999999999999775444  89999999853     4566888764   457999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+|.|.|..+.   .+..+.|.|.+++.
T Consensus        78 Y~C~a~N~~g~---~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           78 YTLLVENKLGS---RQAQVNLTVVDKPD  102 (114)
T ss_dssp             EEEEEECSSCE---EECCEEEEEECSCS
T ss_pred             EEEEEEECCCc---EEEEEEEEEECCCC
Confidence            99999998763   56688999986554

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=8.2e-18  Score=109.48  Aligned_cols=89  Identities=18%  Similarity=0.249  Sum_probs=73.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C   85 (114)
                      .|...+++..+.+|++|.|.|.+.+.+.++ .+.|+||+..+     ..++||.+..+|   .|.|.+++.+|+| .|+|
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~-~v~W~k~g~~i-----~~~~r~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   82 (104)
T 2eny_A           10 GITKRLKTMEVLEGESCSFECVLSHESASD-PAMWTVGGKTV-----GSSSRFQATRQGRKYILVVREAAPSDAG-EVVF   82 (104)
T ss_dssp             CCSBCCCCEEEESSCCEEEEEECSSCCCSS-CBCCBSSSSBC-----SBCSSCEEEEETTEEEEEECSCCTTTCS-CEEE
T ss_pred             EEEecCCCcEEcCCCcEEEEEEEcCCCCCc-eeEEEECCEEC-----CCCCCEEEEEcCCEEEEEECCCCHHHCE-EEEE
Confidence            478889999999999999999996643322 68999999854     456799887766   6999999999996 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|.|.       +..|+|.|++++..
T Consensus        83 ~a~~~-------~~~a~L~V~~~p~~  101 (104)
T 2eny_A           83 SVRGL-------TSKASLIVRERSGP  101 (104)
T ss_dssp             EETTE-------EEEECEEEECCCSS
T ss_pred             EECCe-------eEEEEEEEeCCCcC
Confidence            99763       45789999988754

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=105.54  Aligned_cols=91  Identities=14%  Similarity=0.271  Sum_probs=74.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+    ...+.||.+..+|   .|.|.+++.+|+| .|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y   77 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKP--VVSWLRNRQPV----RPDQRRFAEEAEGGLCRLRILAAERGDAG-FY   77 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCC--EEEEEETTEEC----CCBTTEEEEECGGGEEEEEESSCCGGGCE-EE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCC--EEEEEECCEEC----CCCCCEEEEECCCCEEEEEEccCCcCCCE-EE
Confidence            4678889999999999999999999765444  89999999864    2345677776666   5999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEec
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|.|.|..+.   .+..+.|.|++
T Consensus        78 ~C~a~N~~g~---~~~~~~l~V~~   98 (99)
T 1u2h_A           78 TCKAVNEYGA---RQCEARLEVRG   98 (99)
T ss_dssp             EEEEEETTEE---EEEEEEEEEEC
T ss_pred             EEEEEECCCc---eeEEEEEEEEC
Confidence            9999998754   45577888875

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=4.8e-17  Score=105.23  Aligned_cols=94  Identities=18%  Similarity=0.361  Sum_probs=76.8

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--CC--cEEEeecCCCCCCee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT--AG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--~G--~L~I~~v~~~D~gg~   82 (114)
                      .+.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+    ...+.||.+..  +|  .|.|.+++.+|+| .
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~   80 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKP--KIYWFKDGKQI----SPKSDHYTIQRDLDGTCSLHTTASTLDDDG-N   80 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEBCCSSCC--EEEEECSSCBC----CTTCSSEEEEECTTCEEEEEESSCCTTTCS-C
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEEEecCCC--EEEEEECCEEC----CCCCCeEEEEECCCcEEEEEECCCChhhCE-E
Confidence            4668889999999999999999999876544  89999998854    22357888764  45  5999999999996 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+|.|.|..+.   .+..+.|.|.++..
T Consensus        81 Y~C~a~N~~g~---~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           81 YTIMAANPQGR---ISCTGRLMVQAVNS  105 (110)
T ss_dssp             CEEEEECTTCC---EEECCCEEEECCSC
T ss_pred             EEEEEEECCCe---EEEEEEEEEECCCC
Confidence            99999999865   46678899987654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=106.07  Aligned_cols=91  Identities=18%  Similarity=0.178  Sum_probs=75.4

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...+++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+     ..+.||.+..++   .|.|.+++.+|+| .|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~k~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y   79 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTA--EVKWYHNGVEL-----QESSKIHYTNTSGVLTLEILDCHTDDSG-TY   79 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCC--EEEEEETTEEC-----CCCSSEEEEEETTEEEEEECSCCGGGCE-EE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCC--EEEEEECCEEC-----CCCCCEEEEECCCEEEEEEcCCCcccCE-EE
Confidence            3668899999999999999999999776544  89999999854     456788887544   5999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.|.|..+.   .+..+.|.|+..
T Consensus        80 ~C~a~N~~G~---~~~~~~l~V~~~  101 (103)
T 3qp3_A           80 RAVCTNYKGE---ASDYATLDVTGG  101 (103)
T ss_dssp             EEEEEETTEE---EEEEEEEEEECC
T ss_pred             EEEEEeCCCc---EEEEEEEEEECC
Confidence            9999998764   566889998864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.71  E-value=2.6e-17  Score=104.15  Aligned_cols=90  Identities=18%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--cCC--cEEEeecCCCCCCee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--TAG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~~G--~L~I~~v~~~D~gg~   82 (114)
                      .+.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+     ..+.|+.+.  .++  .|.|.+++.+|+| .
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~   76 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKI-----ERSDRIYWYWPEDNVCELVIRDVTGEDSA-S   76 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEEC-----CCCSSEEEEEEETTEEEEEECSCCGGGCE-E
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCC--EEEEEECCEEC-----CCCCCEEEEEcCCCEEEEEECCCCcCCCE-E
Confidence            4678889999999999999999999765444  89999999854     345566543  233  7999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+|.|.|..+.   .+..+.|.|..
T Consensus        77 Y~C~a~N~~g~---~~~~~~l~V~~   98 (99)
T 1g1c_A           77 IMVKAINIAGE---TSSHAFLLVQA   98 (99)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEEC
T ss_pred             EEEEEEECCCc---EEEEEEEEEec
Confidence            99999998754   45577888875

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.71  E-value=2.9e-17  Score=103.72  Aligned_cols=89  Identities=18%  Similarity=0.315  Sum_probs=73.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+     ..+.||.+..++   .|.|.+++.+|+| .|+
T Consensus         7 P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p--~v~W~~~g~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~   78 (99)
T 3puc_A            7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRP--TAIWTKDGKAI-----TQGGKYKLSEDKGGFFLEIHKTDTSDSG-LYT   78 (99)
T ss_dssp             EEEEECCCCEEEESSSCEEEEEEEEEESCC--EEEEEETTEEC-----CSSSSEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             CEEEecCccEEEeCCCcEEEEEEEEecCCC--EEEEEECCEEC-----cCCCCEEEEEeCCEEEEEECCCCcccCE-EEE
Confidence            568888999999999999999999765444  89999999853     456899887655   6999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEec
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|.|.++.   .+..+.|.|+.
T Consensus        79 C~a~n~~g~---~~~~~~l~V~~   98 (99)
T 3puc_A           79 CTVKNSAGS---VSSSCKLTIKA   98 (99)
T ss_dssp             EEEEETTEE---EEEEEEEEEEC
T ss_pred             EEEEeCCCc---EeEEEEEEEEe
Confidence            999998764   46677888763

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.71  E-value=2.8e-17  Score=106.78  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=70.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCc-ceEEEeeCCeeeeeeeeccCCcEEEc---------cCCcEEEeecCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNL-LLIAWLREGVSEARSIIHSGGRYSIT---------TAGALHIRDTGME   77 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~-~~vsW~kd~~~~~~~~~~~~~r~~v~---------~~G~L~I~~v~~~   77 (114)
                      +.|...|++..|.+|.+|.|.|.+.+.+.+. +.|.|+|++....  ....+.||.+.         .++.|.|.+|+.+
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDL--SSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEG--GGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccc--cccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            5688899999999999999999997665411 2899999873211  11234577653         2478999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+| .|+|.|.|..+.   .+..++|.|.+
T Consensus        83 D~G-~Y~C~a~N~~G~---~~~~~~L~V~~  108 (108)
T 3cx2_A           83 FTG-SYRCEVSTKDKF---DCSNFNLTVHE  108 (108)
T ss_dssp             GCE-EEEEEEECSSCE---EEEEEEEEEEC
T ss_pred             cCE-EEEEEEecCCCc---eEEEEEEEEeC
Confidence            995 999999998764   56688888864

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.70  E-value=5e-17  Score=102.83  Aligned_cols=89  Identities=24%  Similarity=0.319  Sum_probs=68.9

Q ss_pred             ceee-ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           9 DYEI-NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         9 ~~~v-~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +|.+ .|++..+.+|.++.|.|.+.+  .+  .+.|+|++..+     ..+.|+.+. ++.|.|.+++.+|+| .|+|.|
T Consensus         2 ~~~~~~p~~~~v~~G~~~~l~C~~~~--~p--~v~W~k~g~~~-----~~~~~~~~~-~~~L~i~~~~~~D~G-~Y~C~a   70 (95)
T 4hwu_A            2 DYGGSQPEAYVVAPGESLELQCMLKD--AA--VISWTKDGVHL-----GPNNRTVLI-GEYLQIKGATPRDSG-LYACTA   70 (95)
T ss_dssp             ------CEEEEECTTSCEEEECCCCT--TC--EEEEEETTEEE-----CCCSSEEEE-TTEEEECSCCGGGCE-EEEEEE
T ss_pred             cccccCCCcEEECCCCEEEEEEEeCC--CC--EEEEEECCEEC-----CCCceEEEe-CCEEEECcCCcccCE-EEEEEE
Confidence            4444 788899999999999999865  23  79999999853     456788775 789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|..+.   .+..+.|.|.++...
T Consensus        71 ~n~~g~---~~~~~~l~V~~~~~~   91 (95)
T 4hwu_A           71 ARTVDS---ETWIFMVNVTDAAEN   91 (95)
T ss_dssp             ECSSCE---EEEEEEEEECCC---
T ss_pred             ccCCCc---EEEEEEEEEeCCccc
Confidence            998763   466889999988654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.70  E-value=3e-17  Score=104.16  Aligned_cols=80  Identities=21%  Similarity=0.316  Sum_probs=65.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeEEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +..+..+.+|+++.|.|.+.+ +.+  .|.|+||+..|     ..++||.+..+|   .|.|.+++.+|+| .|+|.|.|
T Consensus         2 ~lt~v~~~~G~~v~l~C~vs~-p~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n   72 (84)
T 2lu7_A            2 HMTRVRSTPGGDLELVVHLSG-PGG--PVRWYKDGERL-----ASQGRVQLEQAGARQVLRVQGARSGDAG-EYLCDAPQ   72 (84)
T ss_dssp             -CCCEEECTTSCEEEECCCSC-CST--TCEEEETTEEC-----CCCSSEEEEECSSCEEEEESSCSSTTCE-EEEEECTT
T ss_pred             CCeEEEEecCCCEEEEEEECC-CCc--EEEEEECCEEc-----cccccEEEeecCCeEEEEecCCCCcccE-EEEEEECC
Confidence            456788999999999999843 333  68999999864     567888887766   5999999999995 99999976


Q ss_pred             ccCCcEEeCCCeEEEEecc
Q psy9140          90 KLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~  108 (114)
                      .       +..++|.|++|
T Consensus        73 ~-------~~~a~l~V~eP   84 (84)
T 2lu7_A           73 D-------SRIFLVSVEEP   84 (84)
T ss_dssp             T-------CEEEEEEECCC
T ss_pred             E-------EEEEEEEEECC
Confidence            2       45789999987

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.70  E-value=5.6e-17  Score=103.43  Aligned_cols=95  Identities=15%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEc----cCCcEEEeecCCCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSIT----TAGALHIRDTGMEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~----~~G~L~I~~v~~~D~g   80 (114)
                      +.|...|++..+.+|.+|.|.|.+.+.+.+  .+.|+|++..++..   ....++||.+.    .++.|.|.+|+.+|+|
T Consensus         7 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            7 QGQFPLTQNVTVVEGGTAILTCRVDQNDNT--SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             -CCCEECCCEEEETTSCEEEEEEESSCSSC--CEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             CCccccCCeeEEEeCCcEEEEeEEcCCCcc--EEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            568899999999999999999999765433  78999988632211   12245699875    3668999999999995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                       .|+|.|.| .+.   .+..+.|.|.+++
T Consensus        85 -~Y~C~~~n-~~~---~~~~~~L~V~~~P  108 (108)
T 3m45_A           85 -QYTCSLFT-MPV---KTSKAYLTVLGVP  108 (108)
T ss_dssp             -EEEEEECS-SSC---EEEEEEEEEECCC
T ss_pred             -EEEEEEEc-CCC---cEEEEEEEEEcCC
Confidence             99999999 543   4667899998764

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=3e-17  Score=105.82  Aligned_cols=96  Identities=17%  Similarity=0.291  Sum_probs=74.9

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC--cEEEeecCCCCCCeee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG--ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G--~L~I~~v~~~D~gg~Y   83 (114)
                      ..+.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+.   .....++....+|  .|.|.+++.+|+| .|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~g~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y   81 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVR---PDSAHKMLVRENGVHSLIIEPVTSRDAG-IY   81 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCC--EEECBBSSSBCC---CCSSEEEEECTTSCEEEEESSCCGGGCS-BB
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCC--EEEEEECCEECC---CCCceEEEEecCCeEEEEEeeCCcccCE-EE
Confidence            45778899999999999999999999776544  899999998641   1112233344444  8999999999996 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      +|.|.|..+.   .+..+.|.|.++..
T Consensus        82 ~C~a~n~~g~---~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           82 TCIATNRAGQ---NSFSLELVVAAKES  105 (110)
T ss_dssp             CEEEECSSCE---EEECCEEEEECCCC
T ss_pred             EEEEECCCCE---EEEEEEEEEeCCCC
Confidence            9999998754   56688999987654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=101.13  Aligned_cols=89  Identities=18%  Similarity=0.281  Sum_probs=72.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCC--cEEEeecCCCCCCeeeEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAG--ALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G--~L~I~~v~~~D~gg~Y~C   85 (114)
                      +...|++..+.+|.++.|.|.+.++ +.+  .+.|+|++..+     ..+.||.+. .+|  .|.|.+++.+|+| .|+|
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   75 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQST--QVTWYFGVRQL-----ENSEKYEITYEDGVAILYVKDITKLDDG-TYRC   75 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTC--EEEEEETTEEC-----CSSSSEEEEEETTEEEEEECSCCGGGCE-EEEE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCC--EEEEEECCEEC-----cCCCCEEEEEcCCeEEEEEecCChhhCe-EEEE
Confidence            4567889999999999999999765 333  89999999853     456788873 466  8999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEeccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|.|..+.   .+..+.|.|++..
T Consensus        76 ~a~n~~g~---~~~~~~l~V~~~~   96 (97)
T 2bk8_A           76 KVVNDYGE---DSSYAELFVKGVR   96 (97)
T ss_dssp             EEECSSCE---EEEEEEEEETTTC
T ss_pred             EEECCCCe---EeEEEEEEEEecC
Confidence            99998764   4557889988643

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=3.5e-17  Score=103.88  Aligned_cols=90  Identities=24%  Similarity=0.332  Sum_probs=70.8

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ..|.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+     ..+.++....++.|.|.+++.+|+| .|+|
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~g~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   81 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP--RITWLLNGQPI-----QYARSTCEAGVAELHIQDALPEDHG-TYTC   81 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCC--CCEEEESSSBC-----SSCCCEEETTEEEEEECSCCTTCCB-CEEE
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCC--eEEEEECCEEC-----cccceEeeCCeEEEEECCCChhhCE-EEEE
Confidence            34678889999999999999999999766544  78999999854     2334444444568999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEe
Q psy9140          86 QTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.|..+.   .+..+.|.|+
T Consensus        82 ~a~N~~g~---~~~~~~l~V~   99 (99)
T 2yr3_A           82 LAENALGQ---VSCSAWVTVH   99 (99)
T ss_dssp             EEECSSCE---EEEECCEEEC
T ss_pred             EEEECCCe---EEEEEEEEEC
Confidence            99999764   4556677664

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.68  E-value=2e-17  Score=107.60  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=75.3

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~   82 (114)
                      ..+.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+     ..+.||.+..   ++.|.|.+++.+|+| .
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~   84 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVP--TVTWLRKGQVL-----STSARHQVTTTKYKSTFEISSVQASDEG-N   84 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCC--BCCBCSSSSCC-----TTCSSEEEEECSSEEEEEECCCCSSCCS-E
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCC--EEEEEECCEEC-----CCCCCEEEEECCCEEEEEECcCCchhCE-E
Confidence            45678899999999999999999999776554  79999999853     4577888865   468999999999996 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+|.|.|..+.   .+..+.|.|++
T Consensus        85 Y~C~a~N~~G~---~~~~~~l~V~~  106 (106)
T 1nct_A           85 YSVVVENSEGK---QEAEFTLTIQK  106 (106)
T ss_dssp             EEECCBCSSCB---CCEEEEEEECC
T ss_pred             EEEEEEeCCCe---EEEEEEEEEEC
Confidence            99999999764   45677888753

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.68  E-value=1.2e-16  Score=102.40  Aligned_cols=94  Identities=16%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      .+.|...+.+..+.+|.++.|.|.+.+.+.+  .+.|+|++..+     ..+.++.+. .++.|.|.+++.+|+| .|+|
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~i~W~~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   81 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETL-----VEDSGIVLKDGNRNLTIRRVRKEDEG-LYTC   81 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----C--CEEEEESSSBC-----CCBTTEEEETTTTEEEECSCCGGGCE-EEEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCC--eEEEEECCeEc-----ccCCCeEEeCCCcEEEEeecCcccCE-EEEE
Confidence            4668889999999999999999999775444  79999999854     334555554 4679999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|.|..+.   .+..+.|.|..+...
T Consensus        82 ~a~n~~g~---~~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           82 QACSVLGC---AKVEAFFIIEGAQEK  104 (108)
T ss_dssp             EEC----C---EEEEEEEEEEC----
T ss_pred             EEEeCCCc---eEEEEEEEEeCCCcc
Confidence            99999765   455689999877653

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=1.7e-16  Score=102.40  Aligned_cols=88  Identities=22%  Similarity=0.304  Sum_probs=72.9

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...+++..+.+|+++.|.|.+.+.+  . .+.|+|++..+     ..+.||.+..+|   .|.|.+++.+|+| .|
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~--~-~v~W~k~g~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y   78 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEK--V-TGKWYKNGVEV-----RPSKRITISHVGRFHKLVIDDVRPEDEG-DY   78 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSS--C-EEEEEESSCBC-----CCCSSCEEEEETTEEEEEESSCCTTTCS-CE
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCC--c-ceEEEcCCEEC-----cCCCCEEEEEeCCEEEEEECCCCcCCCE-EE
Confidence            35688899999999999999999997643  2 38999999853     456788887777   8999999999996 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.|.|.     ..+..++|.|.+.
T Consensus        79 ~C~a~n~-----~~~~~~~l~V~~~   98 (106)
T 2dlt_A           79 TFVPDGY-----ALSLSAKLNFLEI   98 (106)
T ss_dssp             EEEEETS-----CCCCCBCEEEECC
T ss_pred             EEEEccC-----CceEEEEEEEEEE
Confidence            9999996     2467888888753

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.67  E-value=1.4e-16  Score=102.77  Aligned_cols=87  Identities=22%  Similarity=0.448  Sum_probs=72.1

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCc---EEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA---LHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~---L~I~~v~~~D~gg~   82 (114)
                      ..+.|...+++..+.+|.++.|.|.+.+.  +  .+.|+|++..+     ..+.||.+..+|.   |.|.+++.+|+| .
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p--~v~W~k~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~   76 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--A--PVEWKKGPETL-----RDGGRYSLKQDGTRCELQIHDLSVADAG-E   76 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--C--CCEEESSSSBC-----CSSSSCEEEEETTEEEEEESSCCTTTCS-E
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--C--eeEEEECCEEC-----CCCCCEEEEecCCEEEEEECCCCcccCE-E
Confidence            44678888999999999999999999653  3  68999999853     4678999988887   999999999996 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |+|.|.|.       +..+.|.|.+++
T Consensus        77 Y~C~a~n~-------~~~~~l~V~~~p   96 (108)
T 2dm7_A           77 YSCMCGQE-------RTSATLTVRALP   96 (108)
T ss_dssp             EEEEETTE-------EEEEECEEECCC
T ss_pred             EEEEEcCC-------EEEEEEEEecCC
Confidence            99999652       456788888743

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.67  E-value=3.9e-17  Score=103.91  Aligned_cols=97  Identities=9%  Similarity=0.247  Sum_probs=70.0

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc------cCCcEEEeecCCCCCC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT------TAGALHIRDTGMEDSY   80 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~------~~G~L~I~~v~~~D~g   80 (114)
                      .+.+...|++..+.+|.+|.|.|.+.+.+.+.+.+.|+|++..+.........|+.+.      .++.|.|.+++.+|+|
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   89 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG   89 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCE
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCC
Confidence            3568888999999999999999998644333238999999986521111111233222      1478999999999995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                       .|+|.|.|..+.  ..|..+.|.|.
T Consensus        90 -~Y~C~a~n~~g~--~~s~~~~l~V~  112 (112)
T 3so5_A           90 -XYQCVISNHFGS--SYSVXAXLTIN  112 (112)
T ss_dssp             -EEEEEEEETTEE--EECCCEEEEEC
T ss_pred             -eEEEEEEeCCCc--EEEeEEEEEeC
Confidence             999999998754  25778888874

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.67  E-value=1.1e-16  Score=101.61  Aligned_cols=85  Identities=26%  Similarity=0.351  Sum_probs=69.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|...|++..+.+|.++.|.|.+.+.+ +  .+.|+||+..+     ..++|+.+. ++.|.|.+++.+|+| .|+|.|
T Consensus        10 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-p--~i~W~k~g~~~-----~~~~~~~~~-~~~L~i~~~~~~D~G-~Y~C~a   79 (95)
T 2ckn_A           10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-Q--SINWLRDGVQL-----VESNRTRIT-GEEVEVRDSIPADSG-LYACVT   79 (95)
T ss_dssp             CCBTTBBCCEEECTTSCEEEECCEESSC-C--EEEEEBTTBCC-----CCCSSEEEC-SSEEEESSCCGGGSE-EEEEEE
T ss_pred             CEEEcCcceEEEcCCCeEEEEEECCCCC-C--ceEEEECCEec-----CCCCCEEEe-CCEEEECCCChHHCE-EEEEEe
Confidence            4577788999999999999999997753 3  89999998853     456788876 799999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEE
Q psy9140          88 THKLTGERKISPPSQVMV  105 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V  105 (114)
                      .|..+.   .+..+.|.|
T Consensus        80 ~n~~g~---~~~~~~l~V   94 (95)
T 2ckn_A           80 SSPSGS---DTTYFSVNV   94 (95)
T ss_dssp             EETTEE---EEEEEEEEE
T ss_pred             ccCCCc---EEEEEEEEE
Confidence            998754   344566665

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.67  E-value=1.5e-16  Score=109.37  Aligned_cols=95  Identities=16%  Similarity=0.377  Sum_probs=75.7

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--cCC--cEEEeecCCCCCCee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--TAG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~~G--~L~I~~v~~~D~gg~   82 (114)
                      .+.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+     ..+.||.+.  .+|  .|.|.+++.+|+| .
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~v~W~k~g~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~  112 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDA-K  112 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEEC-----CCSSSEEEEECTTCEEEEEESSCCGGGCE-E
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCC--EEEEEECCEEC-----CCCCcEEEEECCCCeEEEEECCCChhcCE-E
Confidence            4668888999999999999999999766544  89999999854     456788775  234  8999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |+|.|.|.++.   .+..+.|.|..++.+.
T Consensus       113 Y~C~a~N~~G~---~~~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          113 YTCKAVNSLGE---ATCTAELLVETMGKEG  139 (154)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEECC----
T ss_pred             EEEEEEECCCe---EEEEEEEEEeCcCcCC
Confidence            99999998764   4667899999887654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=3.7e-16  Score=100.27  Aligned_cols=86  Identities=21%  Similarity=0.313  Sum_probs=70.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCC--cEEEccC---CcEEEeecCCCCCCeeeE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGG--RYSITTA---GALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~--r~~v~~~---G~L~I~~v~~~D~gg~Y~   84 (114)
                      |...+++..+.+|.++.|.|.+.+ +.  ..+.|+||+..+     ..+.  ||.+..+   +.|.|.+++.+|+| .|+
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~--~~v~W~k~g~~l-----~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~   80 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DD--ANVKWFKNGEEI-----IPGPKSRYRIRVEGKKHILIIEGATKADAA-EYS   80 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SS--CCCEEEETTEEC-----CCSTTCSEEEEEETTEEEEEEEEECTTTCS-EEE
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CC--CeEEEEECCEEC-----CCCCceEEEEEEcCCEEEEEECCCCcccCE-EEE
Confidence            788899999999999999999954 22  278999999864     3344  8888765   47999999999996 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |.|.|       .+..++|.|.+++..
T Consensus        81 C~a~n-------~~~~~~l~V~~~p~p  100 (103)
T 1x44_A           81 VMTTG-------GQSSAKLSVDLKSGP  100 (103)
T ss_dssp             EEETT-------EEEEEEEEEECCCSC
T ss_pred             EEECC-------CcEEEEEEEeCCCCC
Confidence            99998       255789999987653

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.65  E-value=5.7e-16  Score=100.73  Aligned_cols=88  Identities=22%  Similarity=0.349  Sum_probs=72.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...+++..+.+|+++.|.|.+.+.  +  .+.|+||+..+     ..+.||.+..+|   .|.|.+++.+|+| .|+
T Consensus        20 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p--~v~W~k~~~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   89 (113)
T 2edh_A           20 IKFTEGLRNEEATEGATAVLRCELSKM--A--PVEWWKGHETL-----RDGDRHSLRQDGARCELQIRGLVAEDAG-EYL   89 (113)
T ss_dssp             CCEEECCCCCEECTTSCEEEEEEESSC--C--CCEEEESSSBC-----CCSSSEEEEEETTEEEEEECSCCSTTCE-EEE
T ss_pred             CcccccCCceEEeCCCeEEEEEEECCC--C--cEEEEECCEEC-----CCCCcEEEEECCCEEEEEECCCChhhCE-EEE
Confidence            468889999999999999999999553  3  68999999853     457899998888   7999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |.|.    .   .+..+.|.|.+++..+
T Consensus        90 C~a~----~---~~~~~~l~V~~~p~~~  110 (113)
T 2edh_A           90 CMCG----K---ERTSAMLTVRAMPSGP  110 (113)
T ss_dssp             EEET----T---EEEEEEEEECCCCCSS
T ss_pred             EEeC----C---CCEEEEEEEeCCCCCc
Confidence            9992    2   3557899999876543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.65  E-value=5.8e-16  Score=98.23  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=67.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...|++..+.+|.+|.|.|.+ +.+.+  .+.|+||+..+     ..+.||.+..+|   .|.|.+++.+|+| .|+
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~--~v~W~k~~~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   79 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGV--KVRWQRGGSDI-----SASNKYGLATEGTRHTLTVREVGPADQG-SYA   79 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSC--CCEEECSSSEE-----CSSTTCEEEEETTEEEEEESSCCTTCCS-EEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCC--eEEEEECCEEC-----CCCCcEEEEEcCCEEEEEEcCCCcccCE-EEE
Confidence            468888999999999999999998 43322  78999999853     456789887766   5999999999996 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEec
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|.+       .+..++|.|+|
T Consensus        80 C~ag~-------~~~~~~l~V~e   95 (95)
T 2k1m_A           80 VIAGS-------SKVKFDLKVIE   95 (95)
T ss_dssp             EEETT-------EEEEEEEEEEC
T ss_pred             EEECC-------ceEEEEEEEeC
Confidence            99933       24458898875

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.65  E-value=1.3e-16  Score=100.62  Aligned_cols=90  Identities=10%  Similarity=0.067  Sum_probs=68.7

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~   82 (114)
                      +.|.|...+++..+.+|+++.|.|.+.+++.|  .++|+|++  ..+     ..+.++... ..+.|.|.+++.+|+| .
T Consensus         1 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~D~G-~   72 (93)
T 1wit_A            1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGAAL-----APELLVDAKSSTTSIFFPSAKRADSG-N   72 (93)
T ss_dssp             CCCEECCCCCEEEECTTBCCEEEEEEECCSSC--EEEEECSTTTCBC-----STTSEEEEETTEEEEECTTBCGGGCE-E
T ss_pred             CCCeEEcCCCceEEeCCCEEEEEEEEEEcCCC--EEEEEECCCCccc-----CCcEEEEecCCEEEEEECCCChhcCE-E
Confidence            35677778889999999999999999887655  89999999  643     222233222 2357999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+|.|.|..+.   .+..+.|.|+
T Consensus        73 Y~C~a~N~~G~---~~~~~~l~V~   93 (93)
T 1wit_A           73 YKLKVKNELGE---DEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEC
T ss_pred             EEEEEEcCCCe---EEEEEEEEEC
Confidence            99999998763   4556677764

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.65  E-value=4.5e-16  Score=101.62  Aligned_cols=99  Identities=17%  Similarity=0.258  Sum_probs=74.0

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEee-----cCCCCCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRD-----TGMEDSY   80 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~-----v~~~D~g   80 (114)
                      ..|.|...|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+.........++.+.++|.|.+..     ++.+|+|
T Consensus         8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCC--EEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE
T ss_pred             CCCeeEcCCCCEEEcCCCcEEEEEECCccCCC--eEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE
Confidence            34668888999999999999999999776554  7999999986521111112356677889887764     5799995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                       .|+|.|.|.++.  ..+..++|.|..+.
T Consensus        86 -~Y~C~a~N~~G~--~~s~~~~l~~~~~~  111 (117)
T 2v9t_A           86 -VYVCVARNYLGE--AVSHDASLEVAAAA  111 (117)
T ss_dssp             -EEEEEEEETTEE--EECCCEEEEEC---
T ss_pred             -EEEEEEEeCccc--eEeeeEEEEhhhhh
Confidence             999999999865  36669999988654

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=2.7e-16  Score=100.62  Aligned_cols=90  Identities=19%  Similarity=0.368  Sum_probs=73.7

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~   82 (114)
                      ..+.|...+++..+.+|+++.|.|.+.+ +.+  .+.|+||+..+     ..+.||.+..+|   .|.|.+++.+|+| .
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~--~v~W~k~g~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~   77 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGT--PVHWLKDRKAI-----RKSQKYDVVCEGTMAMLVIRGASLKDAG-E   77 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSC--CCCEEESSCBC-----CCSSSEEEEEETTEEEEEESSCCTTTCS-E
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCC--cEEEEECCEEc-----cCCCCEEEEECCCEEEEEECCCCcccCE-E
Confidence            3456888899999999999999999964 222  78999999853     456799998777   4999999999996 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.|.|.       +..++|.|.+++..
T Consensus        78 Y~C~a~n~-------~~~~~l~V~~~p~~   99 (103)
T 2edf_A           78 YTCEVEAS-------KSTASLHVEEKASG   99 (103)
T ss_dssp             EEEECSSC-------EEEEEEEECCCSSS
T ss_pred             EEEEEccC-------CcEEEEEEeCCCCC
Confidence            99999992       45789999876653

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.65  E-value=1.7e-15  Score=96.84  Aligned_cols=90  Identities=22%  Similarity=0.384  Sum_probs=73.5

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCc---EEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA---LHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~---L~I~~v~~~D~gg~   82 (114)
                      ..+.|...+++..+.+|.++.|.|.+.+.+.+   +.|+|++..+     ..+.||.+..+|.   |.|.+++.+|+| .
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~---v~W~k~~~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~   77 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVL-----RPGDKYSLRQEGAMLELVVRNLRPQDSG-R   77 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS---CEEEESSSBC-----CCSSSEEEEECSSEEEEEECSCCTTTCC-C
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC---eEEEECCEEC-----CCCCcEEEEEcCCEEEEEEccCCcccCE-E
Confidence            34668888999999999999999999765433   8999998853     4577999988887   999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.+.    .   .+..++|.|.+++..
T Consensus        78 Y~C~~g----~---~~~~~~l~V~~~p~~   99 (103)
T 2e7b_A           78 YSCSFG----D---QTTSATLTVTALPSG   99 (103)
T ss_dssp             EEEECS----S---CBCCBCEEEECCCCC
T ss_pred             EEEEEC----C---cEEEEEEEEEecccc
Confidence            999832    2   466889999987643

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-16  Score=102.05  Aligned_cols=87  Identities=20%  Similarity=0.281  Sum_probs=70.5

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCC----cEEEccCC---cEEEeecCCCCC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGG----RYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~----r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      .+.|...+++..+.+|++|.|.|.+.+.+ +  .+.|+||+..+     ..+.    ||.+..+|   .|.|.+++.+|+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~--~v~W~k~g~~i-----~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   79 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-A--QVMWMKNGVEL-----TREDSFKARYRFKKDGKRHILIFSDVVQEDR   79 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-C--CCEEEESSCBC-----CCSCCSSCCCEEEECSSEEEEECSSCCGGGC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-C--EEEEEECCEEC-----CCCCCcceeEEEEECCCEEEEEECCCChhhC
Confidence            45688889999999999999999997654 3  78999999864     2233    88887766   499999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      | .|+|.|.|.       +..++|.|.+++
T Consensus        80 G-~Y~C~a~n~-------~~~~~l~V~~~P  101 (101)
T 2edk_A           80 G-RYQVITNGG-------QCEAELIVEEKQ  101 (101)
T ss_dssp             S-BEEEECSSC-------EECCBEEEECCC
T ss_pred             E-EEEEEEcCC-------cEEEEEEEeCCC
Confidence            6 999999982       346789998763

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=107.91  Aligned_cols=93  Identities=22%  Similarity=0.176  Sum_probs=71.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCC---CCCcceEEEeeCCeeeeeeeeccCCcEEEcc---------CCcEEEeecCC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAY---NHNLLLIAWLREGVSEARSIIHSGGRYSITT---------AGALHIRDTGM   76 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~---~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---------~G~L~I~~v~~   76 (114)
                      .|...|++..|.+|..|.|.|.+.+.   +.|  .|.|+|+....+  ....+.||.+..         +++|.|++|+.
T Consensus        14 ~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P--~V~W~Kgk~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   89 (118)
T 2edn_A           14 VFLKKPDSVSVETGKDAVVVAKVNGKELPDKP--TIKWFKGKWLEL--GSKSGARFSFKESHNSASNVYTVELHIGKVVL   89 (118)
T ss_dssp             SCSBCCCCCEEETTSCEECCEEEETTTSSSCC--CCEEEETTTCCC--CCSTTSSCEEEEEECSSSCEEEEEEEESSCCT
T ss_pred             eEEECCCCeEEeCCCCEEEEEEEeccCCCCCC--cEEEeeCCEecc--CCCCccEEEeccccccccccceEEEEEeeCCh
Confidence            48899999999999999999998543   334  899999753211  111245555521         47899999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|+| .|+|.|.|..+   +.|..++|.|.+|.
T Consensus        90 ~D~G-~Y~Cevsn~~g---~~s~~~~L~V~~~~  118 (118)
T 2edn_A           90 GDRG-YYRLEVKAKDT---CDSCGFNIDVEAPR  118 (118)
T ss_dssp             TTCS-CEEEEEECSSC---EEEEEECCEEECCC
T ss_pred             hhCE-EEEEEEEEcCC---cEEEEEEEEEEcCC
Confidence            9996 99999999875   36779999999863

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=99.90  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=67.7

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CC--cEEEeecCCCCCCeeeEEEEeec
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AG--ALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G--~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+     . ++|+.+.. ++  .|.|.+++.+|+| .|+|.|.|.
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p--~i~W~k~g~~l-----~-~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~  101 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRP--QVVWTKGGAPL-----D-TSRVHVRTSDFDTVFFVRQAARSDSG-EYELSVQIE  101 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCC--EEEEEETTEEC-----C-CSSCEEEECSSEEEEEESSCCTTTCE-EEEEEEECS
T ss_pred             CCCEEEECCCEEEEEEEEccCCCC--EEEEEECCEEC-----C-CCcEEEEECCCeEEEEECCCChhcCE-EEEEEEEeC
Confidence            577889999999999999776555  89999999864     2 45665543 33  4999999999995 999999999


Q ss_pred             cCCcEEeCCCeEEEEeccc
Q psy9140          91 LTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~~~~  109 (114)
                      .+.   .+..+.|.|.+++
T Consensus       102 ~G~---~~~~~~l~V~~~P  117 (118)
T 2e7c_A          102 NMK---DTATIRIRVVEKA  117 (118)
T ss_dssp             SCE---ECCEEEEEEECCC
T ss_pred             CCe---EEEEEEEEEEcCC
Confidence            763   6778899998765

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=7.7e-16  Score=100.33  Aligned_cols=85  Identities=20%  Similarity=0.373  Sum_probs=67.9

Q ss_pred             ccceeeccce-eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccC-CcEEEccCC---cEEEeecCCCCCCe
Q psy9140           7 SSDYEINTGN-TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG-GRYSITTAG---ALHIRDTGMEDSYI   81 (114)
Q Consensus         7 ~~~~~v~~~d-~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~-~r~~v~~~G---~L~I~~v~~~D~gg   81 (114)
                      .+.|...+.+ ..+.+|.+|.|.|.+ +.+.+  .+.|+||+..+     ..+ .||.+..+|   .|.|.+++.+|+| 
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-   85 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDA--EVKWLKNGQEI-----QMSGSKYIFESIGAKRTLTISQCSLADDA-   85 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSS--CCEEEESSSEE-----CCCSSSSEEEEETTEEEEEECSCSSSSCE-
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCC--EEEEEECCEEC-----CCCCCeEEEEecCCEEEEEECCCCcccCE-
Confidence            4568777777 789999999999998 43333  78999999864     334 799888778   8999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|+|.|.|       .+..++|.|++
T Consensus        86 ~Y~C~a~~-------~~~~~~l~V~e  104 (104)
T 1pd6_A           86 AYQCVVGG-------EKCSTELFVKE  104 (104)
T ss_dssp             EEEEEETT-------EEECCEEEEEC
T ss_pred             EEEEEECC-------CcEEEEEEEeC
Confidence            99999954       23467888875

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.64  E-value=1.6e-15  Score=101.04  Aligned_cols=95  Identities=16%  Similarity=0.086  Sum_probs=70.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeee----ee----------eeeccCCcEEEccCCcEEEeec
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSE----AR----------SIIHSGGRYSITTAGALHIRDT   74 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~----~~----------~~~~~~~r~~v~~~G~L~I~~v   74 (114)
                      ++.+.|....+.+|..|.|.|...+  .+...++|+|+...+    |.          +...-.+|+.+.+||+|.|+||
T Consensus         2 ~l~i~~~p~~~~~G~~v~L~~~~~p--~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nv   79 (111)
T 2qsq_A            2 KLTIESTPFNVAEGKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNI   79 (111)
T ss_dssp             CCEEEEESSEEETTSCEEEEEESCC--SSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSC
T ss_pred             CcEEEeccceeccCCCEEEEEeCCC--CCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccC
Confidence            3677888889999999999998522  232279999986421    00          0001268999999999999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +.+|+| .|+|.+.|..++  ..+..+.|.|.++
T Consensus        80 t~~D~G-~Ytc~v~~~~~~--~~~~~~~L~V~~~  110 (111)
T 2qsq_A           80 IQNDAG-FYTLHVIKSDLV--NEEATGQFRVYPE  110 (111)
T ss_dssp             CGGGCE-EEEEEEEETTSC--CEEEEEEEEEECC
T ss_pred             cccCCe-EEEEEEEeCCCc--EEEEEEEEEEecC
Confidence            999995 999999997443  1355778888764

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=100.86  Aligned_cols=88  Identities=19%  Similarity=0.259  Sum_probs=70.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCC----------cEEEccCC---cEEEeec
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGG----------RYSITTAG---ALHIRDT   74 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~----------r~~v~~~G---~L~I~~v   74 (114)
                      +.|...++|..|.+|+.|+|.|.+.+  .+  .+.|+|||..|     ..+.          ||.+..+|   .|.|+++
T Consensus         9 ~~~~~~l~d~~v~eG~~a~f~C~vs~--~p--~v~W~knG~~l-----~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v   79 (112)
T 2e6q_A            9 ARLVAGLEDVQVYDGEDAVFSLDLST--II--QGTWFLNGEEL-----KSNEPEGQVEPGALRYRIEQKGLQHRLILHAV   79 (112)
T ss_dssp             CCEEECCCCEEEETTCEEEEEEEESS--CC--CCEEEESSCBC-----CSSCCCTTSCTTSCEEEECCBTTEEEEEEESC
T ss_pred             cEEecCCCCeEEcCCCcEEEEEEECC--CC--eEEEEECCEEC-----ccCcccccccccccEEEEEeCCcEEEEEECCC
Confidence            34889999999999999999999965  23  68999999964     3444          99998878   6999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +.+|+| .|+|..-+   +   ..+.|+|.|.+++..
T Consensus        80 ~~~D~G-~Y~~~~~~---~---~~ssA~L~V~~~p~~  109 (112)
T 2e6q_A           80 KHQDSG-ALVGFSCP---G---VQDSAALTIQESSGP  109 (112)
T ss_dssp             CSTTCS-EEEEEEET---T---EEEEEEEEEECSSCS
T ss_pred             CHHHCc-cEEEEEEC---C---eeEEEEEEEeCCCcc
Confidence            999996 99773333   2   245799999987654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=98.03  Aligned_cols=89  Identities=17%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             ccceeeccce---eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCC
Q psy9140           7 SSDYEINTGN---TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSY   80 (114)
Q Consensus         7 ~~~~~v~~~d---~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~g   80 (114)
                      .+.+.+.|++   ..+.+|+++.|.|.+.+.+.+   +.|+|++..+     ..+.||.+..+|   .|.|.+++.+|+|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~---v~W~k~g~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G   78 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP---ATWYKDGQKV-----EESELLVVKMDGRKHRLILPEAKVQDSG   78 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC---CEEEETTEEC-----CCBTTBEEEEETTEEEEEESSCCTTTCE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc---cEEeeCCEEC-----CCCCCEEEEeCCCEEEEEECCCChhhCE
Confidence            4567788888   789999999999999765433   7999999854     456788887655   5999999999995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                       .|+|.|.|.       +..+.|.|.+++..
T Consensus        79 -~Y~C~a~n~-------~~~~~l~V~~~P~p  101 (104)
T 2e6p_A           79 -EFECRTEGV-------SAFFGVTVQDPSGP  101 (104)
T ss_dssp             -EEEEECSSC-------CCCEEEEEECCCCS
T ss_pred             -EEEEEECCc-------eEEEEEEEcCCCCC
Confidence             999999984       44789999987653

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.63  E-value=2.3e-16  Score=101.38  Aligned_cols=82  Identities=12%  Similarity=0.282  Sum_probs=61.1

Q ss_pred             cceeeccce-e--EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCe
Q psy9140           8 SDYEINTGN-T--FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d-~--~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg   81 (114)
                      |++-+.|.+ .  .+.+|++++|.|.+.+ +.+  .+.|+|||..|     ..++||.+..+|   .|.|.+++.+|+| 
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~--~v~W~k~g~~i-----~~~~~~~i~~~~~~~~L~I~~v~~~D~G-   74 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDA--PVRWYKDGQEV-----EESDFVVLENEGPHRRLVLPATQPSDGG-   74 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTS--CCEEEETTSCC-----CCCSSCEEEEETTEEEEEESSCCGGGCS-
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCc--EEEEEECCEEe-----eeeeeeeEEecCCeEEEEeCCCChhhcE-
Confidence            344555644 3  3468999999999843 222  78999999854     567888887766   5999999999996 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|+|.|.|.       +..++|.|
T Consensus        75 ~Y~C~a~n~-------~~~~~ltV   91 (91)
T 2lvc_A           75 EFQCVAGDE-------CAYFTVTI   91 (91)
T ss_dssp             EEEEECSSC-------EEEEEEEC
T ss_pred             EEEEEEcce-------EEEEEEEC
Confidence            999999873       33556654

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.63  E-value=1.9e-15  Score=96.45  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=70.3

Q ss_pred             ccceeeccce-eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCee
Q psy9140           7 SSDYEINTGN-TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d-~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~   82 (114)
                      .+.|...+++ ..+.+|+++.|.|.+. .+.+  .+.|+||+..+     ..+.||.+..+|   .|.|.+++.+|+| .
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~--~v~W~k~g~~i-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~   77 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKL--EVKWYKNGQEI-----RPSTKYIFEHKGCQRILFINNCQMTDDS-E   77 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTS--CEEEEESSCBC-----CCBTTEEEEEETTEEEEEEEEECTTTCC-E
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCc--eEEEEECCEEC-----CCCCCEEEEecCCEEEEEEcCCCcCcCE-E
Confidence            4668888888 5788999999999986 3222  89999999853     456799887766   4999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+|.|    +.   .+..++|.|.+++.
T Consensus        78 Y~C~a----g~---~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           78 YYVTA----GD---EKCSTELFVRSGPS   98 (100)
T ss_dssp             EEEEE----TT---EEEEEEEEECCSCC
T ss_pred             EEEEE----CC---ceEEEEEEEecCCC
Confidence            99999    22   35578999998764

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=3.8e-15  Score=95.15  Aligned_cols=89  Identities=18%  Similarity=0.263  Sum_probs=72.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...+++..+.+|.+|.|.|.+ +.+.+  .+.|+|++..+     ..+.||.+..+|   .|.|.+++.+|+| .|
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~--~v~W~k~~~~l-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y   78 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAA--TVTWRKGLLEL-----RASGKHQPSQEGLTLRLTISALEKADSD-TY   78 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC-SSCCS--CCEEEESSCBC-----CSSSSEEEEEETTEEEEEEESCCTTTCS-EE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe-CCCCC--eEEEEeCCEEC-----CCCCeEEEEeCCCEEEEEECCCCcccCE-EE
Confidence            4568889999999999999999995 44333  78999999853     456799998777   8999999999996 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|.    .+.   .+..+.|.|.+++..
T Consensus        79 ~C~----~g~---~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           79 TCD----IGQ---AQSRAQLLVQGRRSG   99 (103)
T ss_dssp             EEE----CSS---CBCCEEEEEECSCCC
T ss_pred             EEE----eCC---ceEEEEEEEeCccCC
Confidence            998    222   466899999876543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.63  E-value=8.4e-16  Score=105.30  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCC---CCCcceEEEeeCCeeeeeeeeccCCcEEEcc---------CCcEEEeecC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAY---NHNLLLIAWLREGVSEARSIIHSGGRYSITT---------AGALHIRDTG   75 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~---~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---------~G~L~I~~v~   75 (114)
                      +.|...|++..|.+|++|.|.|.+.+.   ++|  .|.|+|+....+  ....+.|+.+..         ++.|+|++|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P--~V~W~Kgk~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   83 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKP--TIKWFKGKWMDL--ASKAGKHLQLKETFERHSRVYTFEMQIIKAK   83 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCC--EEEEEESSSCCH--HHHTTSSEEEEEEEETTTTEEEEEEEECSCC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCC--cEEEeeCcCccc--CCCCCceEEEccccccccccceEEEEEccCC
Confidence            568999999999999999999998542   344  899999753210  111245665521         4789999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+|+| .|+|.|.|..+   ..+..++|.|.+
T Consensus        84 ~~DaG-~Y~Cevsn~~g---~~~~~~~L~V~~  111 (126)
T 2dav_A           84 DNFAG-NYRCEVTYKDK---FDSCSFDLEVHE  111 (126)
T ss_dssp             TTSCE-EEEEEEECSSC---EEEECCEEEEEC
T ss_pred             cccCE-EEEEEEEeCCC---cEEEEEEEEEEe
Confidence            99995 99999999853   367799999998

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.62  E-value=4.7e-16  Score=102.03  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             ceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee-eccCCc-EE----EccCCcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI-IHSGGR-YS----ITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~-~~~~~r-~~----v~~~G~L~I~~v~~~D~gg   81 (114)
                      +..+.|.+. .+.+|+++.|.|.+.+.+.+.+.+.|+|++..+.... ...+.+ +.    ...++.|.|.+++.+|+| 
T Consensus         9 ~v~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG-   87 (122)
T 3s35_X            9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG-   87 (122)
T ss_dssp             EEEEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCE-
T ss_pred             EEEEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCE-
Confidence            355677776 8999999999999965433323889999987431100 011111 11    123568999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      .|+|.|.|..+.   .+..+.|.|.+++.|.
T Consensus        88 ~Y~C~a~n~~g~---~~~~~~l~V~~~p~i~  115 (122)
T 3s35_X           88 LYTCAASSGLMT---KKNSTFVRVHEKPFVA  115 (122)
T ss_dssp             EEEEEEECSSCE---EEEEEEEEEEEEECC-
T ss_pred             EEEEEEccCCCc---eEEEEEEEEeccCeEE
Confidence            999999998764   3467899999887664

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=94.44  Aligned_cols=84  Identities=14%  Similarity=0.284  Sum_probs=67.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .|.+.|++..+.+|.++.|.|.+.+++.+  .+.|+|++..+     ..+      .++.|.|.+++.+|+| .|+|.|.
T Consensus         5 ~i~~~p~~~~v~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~-----~~~------~~~~L~i~~v~~~d~G-~Y~C~a~   70 (91)
T 3bfo_A            5 QICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPL-----THE------TKKLYMVPYVDLEHQG-TYWCHVY   70 (91)
T ss_dssp             EEEECCCCEEECTTSCEEEECEEECSSCC--EEEEEETTEEC-----TTC------CSSEEEESSCCGGGCE-EEEEEEE
T ss_pred             EEEECCCccEecCCCcEEEEEEeccCCCC--EEEEEcCCeeC-----CcC------CCCeEEECCCCHHhCE-EEEEEEE
Confidence            57788999999999999999999776554  89999998853     222      2478999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEecc
Q psy9140          89 HKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |..+.  ..|....|.|.+.
T Consensus        71 n~~g~--~~s~~~~l~V~~~   88 (91)
T 3bfo_A           71 NDRDS--QDSKKVEIIIDEL   88 (91)
T ss_dssp             CSSCE--EECCCEEEEEC--
T ss_pred             cCCCC--EEeeeEEEEEehh
Confidence            99764  3467889999765

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.62  E-value=1.6e-15  Score=105.64  Aligned_cols=98  Identities=24%  Similarity=0.372  Sum_probs=73.3

Q ss_pred             cccceeeccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      ..+.+...|.+..+.+|.++.|.|.+ .+++.+  .+.|+|++..+    ...+.|+.+ .+|.|.|.+++.+|+| .|+
T Consensus       110 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~~~~l----~~~~~~~~~-~~~~L~i~~~~~~d~G-~Y~  181 (212)
T 2v9r_A          110 LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP--TISWKKDGSPL----DDKDERITI-RGGKLMITYTRKSDAG-KYV  181 (212)
T ss_dssp             ECSSCSBCCCCEEEETTSCEEEECBCCCEESCC--EEEEEETTEEE----CTTSTTEEE-ETTEEEESSCCGGGCE-EEE
T ss_pred             ccccceeCCCceEecCCCcEEEEEecCCCCCCC--EEEEEECCccC----CCCcceEEc-cCCeEEEeeCCHhhCe-eEE
Confidence            34567778888999999999999998 555444  89999999864    223455554 5899999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALPLK  113 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~~  113 (114)
                      |.|.|..+.  ..+..+.|.|.+++.++.
T Consensus       182 C~a~N~~g~--~~s~~~~l~V~~~P~~~~  208 (212)
T 2v9r_A          182 CVGTNMVGE--RESEVAELTVLERPSFVK  208 (212)
T ss_dssp             EEEEETTEE--EECCCEEEEEEC------
T ss_pred             EEEecccCc--eecceEEEEEEeCchHhh
Confidence            999998754  345578999999887754

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.2e-15  Score=99.98  Aligned_cols=89  Identities=19%  Similarity=0.303  Sum_probs=71.4

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCC---cEEEeecCCCCCCeeeE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      .|...+++..+.+|.+|.|.|.+.+.+.+  .+.|+||+..+     ..+.||.+. .+|   .|.|.+++.+|+| .|+
T Consensus        15 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   86 (115)
T 2cr6_A           15 HIIEDLEDVDVQEGSSATFRCRISPANYE--PVHWFLDKTPL-----HANELNEIDAQPGGYHVLTLRQLALKDSG-TIY   86 (115)
T ss_dssp             EEEECCCEEEEETTSCEECCCEEESTTCC--SCEEEESSCEE-----CCSSSCCBCCBTTTBCCBEECSCCTTTCE-EEE
T ss_pred             eEeccCccEEEeCCCcEEEEEEEcCCCCC--ccEEEECCEEC-----CCCCcEEEEEcCCCEEEEEEcCCChhhCE-EEE
Confidence            47888999999999999999999765444  78999999854     456777765 223   7999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |.+.+       .+..++|.|.+++.+.
T Consensus        87 C~~g~-------~~~~~~L~V~~~p~~~  107 (115)
T 2cr6_A           87 FEAGD-------QRASAALRVTEKPSVF  107 (115)
T ss_dssp             EEETT-------EECCEEEEEECCSSCC
T ss_pred             EEECC-------eeEEEEEEEECCCcee
Confidence            99432       3557999999888765

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.1e-15  Score=97.63  Aligned_cols=89  Identities=19%  Similarity=0.308  Sum_probs=70.5

Q ss_pred             cceeeccce---eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCe
Q psy9140           8 SDYEINTGN---TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d---~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg   81 (114)
                      +.+.+.|++   ..+.+|.++.|.|.+. .+.+  .+.|+|++..+     ..+.||.+..+|   .|.|.+++.+|+| 
T Consensus        11 p~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~--~v~W~k~g~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-   81 (113)
T 2cpc_A           11 SSWIVYPSGKVYVAAVRLERVVLTCELC-RPWA--EVRWTKDGEEV-----VESPALLLQKEDTVRRLVLPAVQLEDSG-   81 (113)
T ss_dssp             SCSEEESCSCEEEEEETTCCEEEEEEES-CTTC--CCEEEETTEEC-----CCBTTBEEEECSSEEEEEESSCCTTTCE-
T ss_pred             CcEEEccCCceeEEEEcCCeEEEEEEec-CCCC--eEEEEECCEEC-----ccCCCEEEEECCCEEEEEECCCCcccCE-
Confidence            456677776   6789999999999984 3222  78999999853     456788887665   7999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      .|+|.|.|       .+..+.|.|.+++.++
T Consensus        82 ~Y~C~a~n-------~~~~~~l~V~~~p~~~  105 (113)
T 2cpc_A           82 EYLCEIDD-------ESASFTVTVTEPPVRI  105 (113)
T ss_dssp             EEEEESSS-------CEEEEEEEEECCCCCC
T ss_pred             EEEEEEec-------CcEEEEEEEecCCchh
Confidence            99999998       2457899999877654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.7e-15  Score=96.00  Aligned_cols=88  Identities=23%  Similarity=0.384  Sum_probs=70.5

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ..+.|.+.|++..+.+|.++.|.|.+.+.+.+  .+.|+||+..+     ...      .++.|.|.+++.+|+| .|+|
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~k~~~~~-----~~~------~~~~L~i~~v~~~d~G-~Y~C   74 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSP--QIHWMKDGVPL-----PLP------PSPVLILPEIGPQDQG-TYSC   74 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSSC--CCCCEESSSBC-----SSC------CCSEEEEESCCTTTCE-EEEC
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCCC--EEEEEECCEEC-----cCC------CCCEEEECCCCcccCE-EEEE
Confidence            44668899999999999999999999775444  78999998854     111      3679999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEecc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|.|..++ ...+....|.|.++
T Consensus        75 ~a~n~~~~-~~~s~~~~v~V~~~   96 (96)
T 2ens_A           75 VATHSSHG-PQESRAVSISIIEP   96 (96)
T ss_dssp             EECCSSCC-CEECCCEEEEECCC
T ss_pred             EEEeCCCC-cEEEEEEEEEEeCC
Confidence            99997554 34677888888764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.61  E-value=1.9e-15  Score=103.94  Aligned_cols=92  Identities=21%  Similarity=0.335  Sum_probs=75.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...+.+..+.+|.++.|.|.+.+++.+  .++|+|++..+     ..+.|+.+..+|.|.|.+++.+|+| .|+|.|
T Consensus       101 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a  172 (192)
T 2iep_A          101 PKITRPPINVKIIEGLKAVLPCTTMGNPKP--SVSWIKGDSAL-----RENSRIAVLESGSLRIHNVQKEDAG-QYRCVA  172 (192)
T ss_dssp             EEEEECCCCEEEETTSCEEECCEEEEESCC--EEEEEETTEEC-----CCCSSEEECTTSCEEESSCCGGGCE-EEEEEE
T ss_pred             CccccCCcceEEeCCCcEEEEEEEeccCCc--eEEEEeCCEEc-----cCCCcEEEecCCcEEEecCChhhCE-EEEEEE
Confidence            456777888899999999999999765444  89999999853     4677999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|.++.  ..+....|.|+.|+
T Consensus       173 ~n~~g~--~~s~~~~l~V~~pp  192 (192)
T 2iep_A          173 KNSLGT--AYSKLVKLEVEVFA  192 (192)
T ss_dssp             EETTEE--EECCCEEEEEEC--
T ss_pred             EcCCCc--EEEEEEEEEEEeCC
Confidence            998754  34668999998774

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=100.20  Aligned_cols=94  Identities=14%  Similarity=0.203  Sum_probs=72.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEcc----CCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSITT----AGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~~----~G~L~I~~v~~~D~gg~   82 (114)
                      +...|++..+.+|++|.|.|.+.+.+.+  .+.|++++..+++.   ....++||.+..    ++.|.|.+++.+|+| .
T Consensus         4 ~~~~~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG-~   80 (124)
T 3rbg_A            4 LTNHTETITVEEGQTLTLKCVTSLRKNS--SLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEG-V   80 (124)
T ss_dssp             CCCSEEEEEEETTSCEEEEEECCCCTTC--EEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCE-E
T ss_pred             ccCCCccEEEcCCCCEEEEeEEeccCCC--EEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCE-E
Confidence            4567888999999999999999765443  89999877754321   113578898854    579999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+|.|.|. +.   .+..+.|.|..+++
T Consensus        81 Y~C~a~n~-g~---~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           81 YKCLHYSD-SV---STKEVKVIVLATMK  104 (124)
T ss_dssp             EEEEEESS-SE---EEEEEEEEEECC--
T ss_pred             EEEEEEcC-CC---CcEEEEEEEEeCCC
Confidence            99999998 32   46678999987764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=96.48  Aligned_cols=88  Identities=25%  Similarity=0.343  Sum_probs=70.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +...|++..+.+|.++.|.|.+.+.+ +  .+.|+|++..+     ..+.|+.+. ++.|.|.+++.+|+| .|+|.|.|
T Consensus         6 ~~~~p~~~~v~~G~~v~L~C~~~g~p-p--~i~W~k~g~~~-----~~~~~~~~~-~~~L~i~~v~~~D~G-~Y~C~a~n   75 (99)
T 2cr3_A            6 SGVEVESFLVHPGDLLQLRCRLRDDV-Q--SINWLRDGVQL-----AESNRTRIT-GEEVEVQDSVPADSG-LYACVTSS   75 (99)
T ss_dssp             CSCCEEECCBCTTSCEEEECCCCSSC-C--EEEEEESSSBC-----CCCSSEEEC-SSEEEETTCCTTTCE-EEEEEEEE
T ss_pred             CCCCCcCeEEeCCCcEEEEEEecCCC-C--eEEEEECCEEC-----CCCCcEEEE-CCEEEEccCCHHHCE-EEEEEEEe
Confidence            34568888899999999999997753 3  89999999753     446688887 789999999999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEEecccc
Q psy9140          90 KLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      ..+.   .+....|.|.++..
T Consensus        76 ~~g~---~~~~~~l~V~~~~~   93 (99)
T 2cr3_A           76 PSGS---DTTYFSVNVSDALP   93 (99)
T ss_dssp             TTEE---EEEEEEECBCSCCS
T ss_pred             CCce---EEEEEEEEEecCCC
Confidence            8754   35567777776554

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=5e-15  Score=94.45  Aligned_cols=80  Identities=16%  Similarity=0.375  Sum_probs=65.1

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeEEEEeec
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +.+..+.+|.++.|.|.+. .+.+  .+.|+||+..+     ..+.||.+..+|   .|.|.+++.+|+| .|+|.|.|.
T Consensus        18 ~~~~~v~~G~~v~L~C~~~-~p~~--~v~W~k~g~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~~~   88 (102)
T 2eo1_A           18 HREVQAEAGASATLSCEVA-QAQT--EVTWYKDGKKL-----SSSSKVRVEAVGCTRRLVVQQAGQAEAG-EYSCEAGGQ   88 (102)
T ss_dssp             CEEEEEETTCCEEECCBCS-CSSS--CCEEEETTEEC-----CCCSSEEEEEETTEEEEEETTCCTTTCS-CEEEEETTE
T ss_pred             cccEEEeCCCcEEEEEEec-CCCC--ceEEEECCEEC-----CCCCCEEEEEcCCEEEEEECCCCcccCE-EEEEEcCCC
Confidence            4667899999999999985 3222  78999999854     456689888766   7999999999996 999999653


Q ss_pred             cCCcEEeCCCeEEEEeccc
Q psy9140          91 LTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~~~~  109 (114)
                             +..++|.|.+|.
T Consensus        89 -------~~~~~l~V~~p~  100 (102)
T 2eo1_A           89 -------QLSFRLQVAGQC  100 (102)
T ss_dssp             -------ECCEEEEEESCC
T ss_pred             -------cEEEEEEEeCCC
Confidence                   456899999875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.59  E-value=3.4e-15  Score=123.63  Aligned_cols=105  Identities=31%  Similarity=0.659  Sum_probs=85.7

Q ss_pred             eccccceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140           4 GDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus         4 avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      +++.+.|...+++..|.+|++|+|+|.+++...++. .+.|+|++..+..+....++||.+.++|+|+|++|+.+|++|.
T Consensus       135 ~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~  214 (816)
T 3dmk_A          135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS  214 (816)
T ss_dssp             EECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGSSCE
T ss_pred             EEEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEecCceEEEecCChhhccce
Confidence            445678889999999999999999999876544433 8999999886533223358899999999999999999998349


Q ss_pred             eEEEEeeccCCcEEeCC-CeEEEEecc
Q psy9140          83 YYCQTTHKLTGERKISP-PSQVMVSEI  108 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~-~a~L~V~~~  108 (114)
                      |+|.|.|..+++.+.+. .+.|.|.++
T Consensus       215 Y~C~~~~~~~~~~~~s~~~~~l~v~~~  241 (816)
T 3dmk_A          215 YQCRTKHRLTGETRLSATKGRLVITEP  241 (816)
T ss_dssp             EEEEEEETTTCCEEECSBCEEEEEECC
T ss_pred             eEEEEeeeeeeeeeecccccceEEeCC
Confidence            99999998888777766 678888875

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.59  E-value=6e-15  Score=104.15  Aligned_cols=96  Identities=20%  Similarity=0.340  Sum_probs=73.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+...|++..+.+|.++.|.|.+.+++.+  .++|+|++..+.  ......|+.+..+   +.|.|.+++.+|+| .|+
T Consensus       109 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~g~~l~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~  183 (212)
T 2yd6_A          109 PTIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVD--TSNNNGRIKQLRSESIGALQIEQSEESDQG-KYE  183 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEEC--------CCEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             ceeecCCcceeEecCCCEEEEEEecCCCCC--eEEEEECCcccc--CcCCCceEEEEecCCeEEEEEcCCCcccCE-EEE
Confidence            457778888899999999999999776544  899999998652  1223468877653   78999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.|.++.  ..|++|+|.|..+..
T Consensus       184 C~a~N~~G~--~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          184 CVATNSAGT--RYSAPANLYVRGTKH  207 (212)
T ss_dssp             EEEEETTEE--EECCCEEEEEEC---
T ss_pred             EEEECCCCc--cccccccEEEEeccc
Confidence            999999765  467799999987654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.58  E-value=4.9e-15  Score=101.44  Aligned_cols=97  Identities=16%  Similarity=0.204  Sum_probs=73.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|...|.+..+.+|+++.|.|.+.+.+.+  .+.|+|++..+   ....+.||.+..++.|.|.+++.+|+| .|+|.+
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~   76 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEV---TTISDNRFAMLANNNLQILNINKSDEG-IYRCEG   76 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEEECSSCC--EEEEEC--------CBCCCTTEEECTTSCEEETTCCGGGCE-EEEEEE
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEEcCCCCC--EEEEEECCccc---eeccCCeEEEecCCCEEEeeCCHhHCc-EEEEEE
Confidence            468889999999999999999999765433  89999998864   234578999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|...+. ..+....|.|..++.+
T Consensus        77 ~~~~~~~-~~~~~~~l~v~~~p~~   99 (189)
T 2v5t_A           77 RVEARGE-IDFRDIIVIVNVPPAI   99 (189)
T ss_dssp             EETTTTE-EEEEEEEEEEEEEEEE
T ss_pred             EEcCCCc-eEEEEEEEEecCCCCc
Confidence            9987543 2233556666655543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.58  E-value=1.1e-14  Score=110.03  Aligned_cols=103  Identities=32%  Similarity=0.679  Sum_probs=83.7

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+.|...+.+..+.+|+++.|.|.++++..++. .+.|+|++..+..+....++|+.+..+|.|.|.+++.+|++|.|+
T Consensus       102 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~  181 (388)
T 2v5m_A          102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ  181 (388)
T ss_dssp             CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEE
T ss_pred             cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEE
Confidence            3466788888999999999999999987655444 899999998764333344789999999999999999999934999


Q ss_pred             EEEeeccCCcEEeCC-CeEEEEecc
Q psy9140          85 CQTTHKLTGERKISP-PSQVMVSEI  108 (114)
Q Consensus        85 C~a~n~l~~~~~~s~-~a~L~V~~~  108 (114)
                      |.|.|..++..+.+. ...|.|.+|
T Consensus       182 C~~~n~~~~~~~~~~~~~~l~v~~~  206 (388)
T 2v5m_A          182 CRTKHRLTGETRLSATKGRLVITEP  206 (388)
T ss_dssp             EEEEETTTCCEEECSSCBCEEEECC
T ss_pred             EEeccCCCCceeeccccceEEEecC
Confidence            999999877766664 568888875

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.57  E-value=8.4e-15  Score=102.90  Aligned_cols=100  Identities=20%  Similarity=0.368  Sum_probs=76.2

Q ss_pred             eccccceeeccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeee---eeccCCcEEEccCCcEEEeecCCCCC
Q psy9140           4 GDMSSDYEINTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARS---IIHSGGRYSITTAGALHIRDTGMEDS   79 (114)
Q Consensus         4 avv~~~~~v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~~~G~L~I~~v~~~D~   79 (114)
                      .+..+.|...|.+..+.+|.++.|.|.+ .+++.+  .++|+|++..+...   ....+.|+.+..+|.|.|.+++.+|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  182 (217)
T 2vr9_A          105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP--TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDE  182 (217)
T ss_dssp             CEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC--EEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTC
T ss_pred             EEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC--eEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHC
Confidence            3445678888999999999999999998 555433  89999999865210   01246788888899999999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      | .|+|.|.|.++.  ..++.+.|.+...
T Consensus       183 G-~Y~C~a~N~~G~--~~~~~~~lv~~~~  208 (217)
T 2vr9_A          183 G-NYKCIAQNLVGT--RESSYAKLIVQVK  208 (217)
T ss_dssp             E-EEEEEEEETTEE--EECCCEEEEEC--
T ss_pred             e-EEEEEEEcccce--eccccEEEEEEee
Confidence            5 999999999864  3555777777643

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.57  E-value=1.6e-16  Score=104.86  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc----cC---CcEEEeecCCCCC-
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT----TA---GALHIRDTGMEDS-   79 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~----~~---G~L~I~~v~~~D~-   79 (114)
                      +.+.. +.+..+.+|.+|.|.|.+.+.+.|. .+.|+|++..+.   ...++||.+.    .+   ..|.|.+++.+|. 
T Consensus        15 P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~-~i~W~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~   89 (122)
T 2cry_A           15 PIISS-TQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLE---SGTSGRYTVETISTEEGVISTLTISNIVRADFQ   89 (122)
T ss_dssp             CCEEE-ECCCCCCTTSCCCCCEEECCSSCCS-EEEEESSSCEEC---SEEETTEEEEEEEETTEEEEEEECTTCCHHHHH
T ss_pred             CCccC-CCeEEEecCCCEEEEEEEeecCCCc-EeEEEECCEEcc---CCCCCCEEEEEecCCCceEEEEEEcCCChhhCC
Confidence            44556 8888999999999999998865441 499999998642   1235788873    22   2899999999998 


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      | .|+|.|.|.++.   .+..++|.|+++.
T Consensus        90 G-~Y~C~a~N~~G~---~~~~~~l~V~~~~  115 (122)
T 2cry_A           90 T-IYNCTAWNSFGS---DTEIIRLKEQGSE  115 (122)
T ss_dssp             S-CEEEEEECSSCE---EEEEECCCCSCSS
T ss_pred             c-eEEEEEECCCCe---EEEEEEEEECCCC
Confidence            6 999999999874   3457778887654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.57  E-value=1.2e-14  Score=102.41  Aligned_cols=92  Identities=20%  Similarity=0.330  Sum_probs=73.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|.++.|.|.+.+.+.+  .++|+|++..+    ...+.||.+ .+|.|.|.+++.+|+| .|+|.|
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~----~~~~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~a  182 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTP--NIYWIKNQTKV----DMSNPRYSL-KDGFLQIENSREEDQG-KYECVA  182 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEECSSCC--EEEEEETTEEC----CTTSTTEEE-ETTEEEECSCCGGGCE-EEEEEE
T ss_pred             CeeEeCCCceEeecCCeEEEEEEeccCCCC--eEEEEECCeEc----ccCCCeEEc-cCCeEEEccCChhhCE-EEEEEe
Confidence            457778888899999999999999776444  89999999864    234567755 4789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|.++.  ..+..+.|.|+++.
T Consensus       183 ~N~~G~--~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          183 ENSMGT--EHSKATNLYVKVRR  202 (212)
T ss_dssp             EETTEE--EECCCEEEEEEC--
T ss_pred             ecCCCc--eeEEEEEEEEEecc
Confidence            998764  24557899999764

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.57  E-value=1.5e-14  Score=95.92  Aligned_cols=96  Identities=18%  Similarity=0.236  Sum_probs=69.4

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeee--------eccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSI--------IHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~--------~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      ..|.+..+.+|++|.|.|.+.+. .... .+.|+|++..+..-.        ..-.+|+.+.+++.|.|+||+.+|+| .
T Consensus         8 ~~~~~v~~~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G-~   85 (117)
T 3q0h_A            8 ETTGNISAEKGGSIILQCHLSST-TAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTG-E   85 (117)
T ss_dssp             EESCCEEEETTCCEEECEEEESC-CCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCE-E
T ss_pred             EccCCEEEecCCCEEEEEEecCC-CCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCE-E
Confidence            35667899999999999998542 1223 799999876542110        01157999888899999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.+.+...+.  .+..+.|.|..|+.+
T Consensus        86 Y~C~v~~~~~g~--~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           86 YFCIYHTYPDGT--YTGRIFLEVLESSVA  112 (117)
T ss_dssp             EEEEEEEETTCC--EEEEEEEEEECC---
T ss_pred             EEEEEEECCCCC--eEEEEEEEEEccCcc
Confidence            999987643332  455789999988764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.57  E-value=1.4e-14  Score=100.23  Aligned_cols=95  Identities=22%  Similarity=0.314  Sum_probs=75.6

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--CC--cEEEeecCCCCCCee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT--AG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--~G--~L~I~~v~~~D~gg~   82 (114)
                      .+.|...|++..+.+|+++.|.|.+.+.+.+  .++|+|++..+    ...+.||.+..  +|  .|.|.+++.+|+| .
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~   76 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEI----IADGLKYRIQEFKGGYHQLIIASVTDDDAT-V   76 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEEC----CCCSSSEEEEEETTTEEEEEECSCCGGGCS-E
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCC--EEEEEECCEEC----ccCCCcEEEEEcCCCEEEEEECcCCHHhCE-E
Confidence            4678899999999999999999999765443  89999999864    23456777653  45  8999999999996 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.|.|..+.   .+..+.|.|..++.+
T Consensus        77 Y~C~~~n~~g~---~~~~~~l~V~~~p~~  102 (197)
T 2j8h_A           77 YQVRATNQGGS---VSGTASLEVEVPAKI  102 (197)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEEEEEEE
T ss_pred             EEEEEEECCCc---eeEEEEEEEcCCCcC
Confidence            99999997543   466778888866543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.56  E-value=4e-15  Score=99.85  Aligned_cols=85  Identities=18%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeee-----ccCCcEEEc------cCCcEEEeecC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSII-----HSGGRYSIT------TAGALHIRDTG   75 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~-----~~~~r~~v~------~~G~L~I~~v~   75 (114)
                      .+.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+.....     ....|+.+.      .++.|.|.+++
T Consensus        21 pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p--~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV   98 (137)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEeCCCCEEEEEEEeeecCC--eEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence            4668899999999999999999999776544  8999998765321000     002455543      56899999999


Q ss_pred             CCCCCeeeEEEEeeccCCc
Q psy9140          76 MEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~   94 (114)
                      .+|+| .|+|.|.|..+..
T Consensus        99 ~~D~G-~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           99 EEDTG-TYECRASNDPDRN  116 (137)
T ss_dssp             GGGCE-EEEEEEECCTTSS
T ss_pred             cccCE-EEEEEEEecCCcc
Confidence            99995 9999999998764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.56  E-value=5.1e-15  Score=101.94  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=68.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|.++.|.|.+.+++.+  .++|+|++..+   ....+.||.+..+|.|.|.+++.+|+| .|+|.|
T Consensus       101 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a  174 (191)
T 1epf_A          101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDV---ILKKDVRFIVLSNNYLQIRGIKKTDEG-TYRCEG  174 (191)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCC--EEEEEETTEEG---GGGCCTTEEECTTSCEEETTCCGGGCE-EEEEEE
T ss_pred             ceEecCCCcEeecCCCeEEEEEEECCCCCC--EEEEEECCEEe---eccCCceEEEecCCeEEECCCChhhCE-EEEEEE
Confidence            446678888899999999999999876544  89999999865   234567999999999999999999995 999999


Q ss_pred             eeccCCc
Q psy9140          88 THKLTGE   94 (114)
Q Consensus        88 ~n~l~~~   94 (114)
                      .|..+++
T Consensus       175 ~n~~~~~  181 (191)
T 1epf_A          175 RILARGE  181 (191)
T ss_dssp             EEGGGTE
T ss_pred             EEeccee
Confidence            9987654

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.56  E-value=7.1e-15  Score=99.80  Aligned_cols=98  Identities=18%  Similarity=0.241  Sum_probs=73.7

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee---eeccCCcEEEcc----CCcEEEeecCCCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS---IIHSGGRYSITT----AGALHIRDTGMED   78 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~---~~~~~~r~~v~~----~G~L~I~~v~~~D   78 (114)
                      ..+.|...|++..+.+|.+|.|+|.+.+.+.+  .+.|++.+...++.   ....++||.+..    ++.|.|.+|+.+|
T Consensus        37 ~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D  114 (145)
T 1z9m_A           37 SQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS--SLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALAD  114 (145)
T ss_dssp             -CCTTCCBCCCEEEETTSCEEEEEECSCCTTC--CEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGG
T ss_pred             cccceecCCceEEEEcCCCEEEEEEEcCCCCc--EEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhh
Confidence            34567889999999999999999999765433  79999543322211   113467888764    5789999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      +| .|+|.|.|. +.   .+..++|.|.+++.
T Consensus       115 sG-~Y~C~~~n~-~~---~~~~~~L~V~~~P~  141 (145)
T 1z9m_A          115 EG-EYTCSIFTM-PV---RTAKSLVTVLGIPQ  141 (145)
T ss_dssp             CE-EEEEEECSS-SC---EEEEEEEEEECCCC
T ss_pred             CE-EEEEEEEcC-CC---ceEEEEEEEEeCCC
Confidence            95 999999998 43   46688999987764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.56  E-value=7.5e-15  Score=106.75  Aligned_cols=97  Identities=16%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc---cCCcEEEeecCCCCCCe
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT---TAGALHIRDTGMEDSYI   81 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~---~~G~L~I~~v~~~D~gg   81 (114)
                      ...+.|...|++..+.+|.++.|.|.+.+.+.+  .++|+|++..+     ..+.+|.+.   .++.|.|.+++.+|+| 
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G-   74 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPI--KITWAKDNREI-----RPGGNYKMTLVENTATLTVLKVTKGDAG-   74 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCC--EEEEEETTEEC-----CSSSSEEEEEETTEEEEEESSCCGGGCE-
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCC--EEEEEECCEEC-----cCCCcEEEEEcCCEEEEEEecCCcccCE-
Confidence            445678999999999999999999999765433  89999999854     445666653   2468999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      .|+|.|.|..+.   .+..+.|.|..++.++
T Consensus        75 ~Y~C~~~n~~g~---~~~~~~l~V~~~p~~~  102 (284)
T 2rik_A           75 QYTCYASNVAGK---DSCSAQLGVQEPPRFI  102 (284)
T ss_dssp             EEEEEEEETTEE---EEEEEEEEEECCCEEE
T ss_pred             EEEEEEEECCce---EEEEEEEEccCCCccc
Confidence            999999997643   4667889998776543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.56  E-value=1.2e-14  Score=109.98  Aligned_cols=95  Identities=21%  Similarity=0.335  Sum_probs=74.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--CeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeEEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +.+++..+.+|+++.|.|.+.+.+.+  .++|+|+  +..+.......++||.+..   ++.|.|.+++.+|+| .|+|.
T Consensus         5 ~~~~~~~~~~G~~v~l~C~~~g~p~p--~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~   81 (389)
T 2jll_A            5 IQLKNETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG-RYDCE   81 (389)
T ss_dssp             EECCCEEEETTSEEEEEEEEECSSCC--EEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCE-EEEEE
T ss_pred             EecCceEEeCCCeEEEEEEeecccCC--eEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCE-EEEEE
Confidence            45889999999999999999876544  8999999  6654211112368998863   568999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecccccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |.|..+.   .+..+.|.|..++.+.
T Consensus        82 a~n~~g~---~~~~~~l~V~~~P~~~  104 (389)
T 2jll_A           82 AASRIGG---HQKSMYLDIEYAPKFI  104 (389)
T ss_dssp             EECSSCE---EEEEEEEEEEEEEEEC
T ss_pred             EEeCCCC---cceEEEEEEEeCCEEe
Confidence            9998764   4668899999877654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.56  E-value=8.3e-15  Score=92.79  Aligned_cols=81  Identities=17%  Similarity=0.233  Sum_probs=61.5

Q ss_pred             ccceeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          13 NTGNTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      .|.+..+.+|.++.|.|.+. +.+.+  .+.|+|++...      ...+. +..+|.|.|.+++.+|+| .|+|.|.|..
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~k~~~~~------~~~~~-~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~   85 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAY--TLVWTRLHNGK------LPSRA-MDFNGILTIRNVQPSDAG-TYVCTGSNMF   85 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCC--EEEEEEGGGBC------CCTTE-EEETTEEEECSCCGGGCE-EEEEEEECSS
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCc--EEEEEeCCCCC------CCcee-ecCCCEEEEeCCChhhCE-EEEEEecCCC
Confidence            45677999999999999996 44333  89999986532      11232 345799999999999995 9999999987


Q ss_pred             CCcEEeCCCeEEEEe
Q psy9140          92 TGERKISPPSQVMVS  106 (114)
Q Consensus        92 ~~~~~~s~~a~L~V~  106 (114)
                      +.   .+..+.|.|+
T Consensus        86 g~---~~~~~~l~V~   97 (98)
T 1gl4_B           86 AM---DQGTATLHVQ   97 (98)
T ss_dssp             CE---EEEEEEEEEC
T ss_pred             Cc---cccEEEEEEe
Confidence            54   4557777775

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=99.63  Aligned_cols=94  Identities=19%  Similarity=0.312  Sum_probs=75.5

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...|++..+.+|+.+.|.|.+.+.+.+  .+.|+|++..+     ..+.||.+..+|   .|.|.+++.+|+| .|
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y   78 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLP--DIKWYRFGKEL-----IQSRKYKMSSDGRTHTLTVMTEEQEDEG-VY   78 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCC--EEEEEETTEEE-----CCCSSEEEEESSSEEEEEEECCSGGGCE-EE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCC--EEEEEECCEEC-----CCCccEEEEeCCCEEEEEEecCCccCCE-EE
Confidence            3568899999999999999999998664333  89999999853     467888888777   7999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|.|.|..+.   .+..+.|.|..++.+
T Consensus        79 ~C~~~n~~~~---~~~~~~l~v~~~p~~  103 (197)
T 3lcy_A           79 TCIATNEVGE---VETSSKLLLQATPQF  103 (197)
T ss_dssp             EEEEECSSCE---EEEEEEEEEEEEEEE
T ss_pred             EEEEECCCCc---eeEEEEEEEEcCCCC
Confidence            9999997653   344667777755443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.55  E-value=1.6e-14  Score=98.90  Aligned_cols=94  Identities=20%  Similarity=0.329  Sum_probs=71.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-----CCcEEEeecCCCCCCee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-----AGALHIRDTGMEDSYIR   82 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-----~G~L~I~~v~~~D~gg~   82 (114)
                      +.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+     ....++.+..     ++.|.|.+++.+|+| .
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~--~v~W~k~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~   74 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEP--DIQWVKDGAVV-----QNLDQLYIPVSEQHWIGFLSLKSVERSDAG-R   74 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSSC--CEEEEETTEEC-----CSSEEEEEEEETTEEEEEEEESSCCGGGCE-E
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCCC--eEEEEECCeec-----CCCCceEEEecCCCceEEEEEeecCcccCe-E
Confidence            468889999999999999999999764333  89999999854     3334444432     268999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.+.|..+.  ..+..+.|.|..++.+
T Consensus        75 Y~C~~~~~~~~--~~~~~~~l~V~~~p~~  101 (182)
T 1rhf_A           75 YWCQVEDGGET--EISQPVWLTVEGVPFF  101 (182)
T ss_dssp             EEEEESSCTTC--EECCCEEEEEECSCEE
T ss_pred             EEEEEEcCCCc--EEEEEEEEEEecCCeE
Confidence            99999998543  3567889999877654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.55  E-value=3.9e-15  Score=107.24  Aligned_cols=82  Identities=12%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEE---eecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHI---RDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I---~~v~~~D~gg~Y~   84 (114)
                      +.+...+++..+.+|.++.|.|.+.+++.|  .|+|+++++.+.. ....++|+.+.++|+|.|   .+++.+|+| .|+
T Consensus       107 ~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P--~v~W~~~~~~~~~-~~~~~~r~~~~~~g~l~il~i~~v~~~D~G-~Yt  182 (203)
T 4fa8_A          107 LTLSVHSERSQFPDFSVLTVTCTVNAFPHP--HVQWLMPEGVEPA-PTAANGGVMKEKDGSLSVAVDLSLPKPWHL-PVT  182 (203)
T ss_dssp             EEEEEEEEECCSSCSCCEEEEEEEEEESCC--EEEECCC-------------CCEECTTSCEEEEEEEEECSSCCC-CEE
T ss_pred             ceeeecceeEEEcCCCEEEEEEEcCCCCCC--EEEEEECCeeecC-cccccceEEEeCCCCEEEEEECCCCHHHCE-EEE
Confidence            346788888999999999999999887655  8999998765432 234578999999999877   599999995 999


Q ss_pred             EEEeeccCC
Q psy9140          85 CQTTHKLTG   93 (114)
Q Consensus        85 C~a~n~l~~   93 (114)
                      |.|.|..+.
T Consensus       183 C~A~N~~G~  191 (203)
T 4fa8_A          183 CVGKNDKEE  191 (203)
T ss_dssp             EEEESSSCE
T ss_pred             EEEEcCCCE
Confidence            999999864

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.55  E-value=1.4e-14  Score=100.39  Aligned_cols=97  Identities=21%  Similarity=0.292  Sum_probs=74.2

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeeeeccCCcEEE--cc--------CCcEEEeecC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSIIHSGGRYSI--TT--------AGALHIRDTG   75 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~~--------~G~L~I~~v~   75 (114)
                      .+.|...|++..+.+|.++.|.|.+. +.+.+  .+.|+||+..+..   ....|+.+  .+        ++.|.|.+++
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   76 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPP--EVHWLRDGQILEL---ADSTQTQVPLGEDEQDDWIVVSQLRITSLQ   76 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCC--CCEEEETTEECCS---CEEEEEEEECSSSTTSEEEEEEEEEESSCC
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCc--EEEEEECCEEccc---CCCCceEEEEccccccceeeccEEEEEecc
Confidence            35789999999999999999999997 65433  7999999986521   11124433  33        3589999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .+|+| .|+|.|.|..+.  ..+..+.|.|..++.+
T Consensus        77 ~~d~G-~Y~C~~~~~~~~--~~~~~~~l~V~~~p~~  109 (195)
T 2c5d_C           77 LSDTG-QYQCLVFLGHQT--FVSQPGYVGLEGLPYF  109 (195)
T ss_dssp             STTCE-EEEEEEEETTEE--EECCCEEEEECCSCEE
T ss_pred             ccCCc-EEEEEEEeCCCc--eecccEEEEEecCCeE
Confidence            99995 999999997432  4566799999877654

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.55  E-value=6.7e-15  Score=93.18  Aligned_cols=83  Identities=18%  Similarity=0.256  Sum_probs=60.6

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +...+.+|.++.|.|.+.+.+.+  .+.|+|++..+..  .....++.+. .++.|.|.+++.+|+| .|+|.|.|..+.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~g~   90 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEYGS   90 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCC--EEEEEETTEECCG--GGSTTCCEEEGGGTEEEECSCCGGGCE-EEEEEEEETTEE
T ss_pred             cEEEecCCCEEEEEEEccccCCC--EEEEEECCEEccc--ccccccEEEecCeEEEEEccCCcCCCE-EEEEEEEeCCCE
Confidence            56778899999999999765444  7999999986421  1111223443 3568999999999995 999999998754


Q ss_pred             cEEeCCCeEEEE
Q psy9140          94 ERKISPPSQVMV  105 (114)
Q Consensus        94 ~~~~s~~a~L~V  105 (114)
                         .+..+.|.|
T Consensus        91 ---~~~~~~l~V   99 (100)
T 3caf_A           91 ---INHTYHLDV   99 (100)
T ss_dssp             ---EEEEEEEEE
T ss_pred             ---EEEEEEEEE
Confidence               344566665

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.54  E-value=4.8e-14  Score=98.45  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +...+.+|.++.|.|...+...+...|.|+|++..+..     .....++||.+.++|.|.|.+|+.+|+| .|+|.|.|
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G-~Y~C~~~n   82 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG-TYNVTVYS   82 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCE-EEEEEEEE
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCE-EEEEEEEe
Confidence            34678999999999953221112228999999975421     1123578999999999999999999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEEecc
Q psy9140          90 KLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~  108 (114)
                      ..+. ...+....|.|.++
T Consensus        83 ~~g~-~~~~~~~~l~V~~~  100 (176)
T 1hng_A           83 TNGT-RILNKALDLRILEM  100 (176)
T ss_dssp             TTCC-EEEEEEEEEEEECC
T ss_pred             CCCC-EEEEEEEEEEEeCC
Confidence            8654 22344678888764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.53  E-value=1e-14  Score=111.79  Aligned_cols=87  Identities=18%  Similarity=0.285  Sum_probs=73.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|...+++..+.+|.++.|.|.+.+.+.+  .++|+||+..+     ..+.|+.+ .+|.|.|.+++.+|+| .|+|.|
T Consensus       296 P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~i~W~k~g~~l-----~~~~~~~~-~~~~L~i~~v~~~D~G-~Y~C~A  366 (384)
T 3kld_A          296 PNWVQIINDIHVAMEESVFWECKANGRPKP--TYRWLKNGDPL-----LTRDRIQI-EQGTLNITIVNLSDAG-MYQCVA  366 (384)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCC--EEEEEETTEEC-----CCBTTEEE-ETTEEEESSCCGGGCE-EEEEEE
T ss_pred             CccccCCCceEecCCCCEEEEeECCccCCC--eEEEEECCEEC-----CCCccEEE-eCCEEEEeecChhhCE-EEEEEE
Confidence            557778889999999999999999776554  89999999854     45678876 4799999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.++.   .++.|.|.|.
T Consensus       367 ~N~~G~---~~~~a~L~V~  382 (384)
T 3kld_A          367 ENKHGV---IFSSAELSVI  382 (384)
T ss_dssp             EETTEE---EEEEEEEEEC
T ss_pred             EeCCce---EEeceEEEEe
Confidence            999864   5667889885

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.53  E-value=1.5e-14  Score=99.49  Aligned_cols=95  Identities=20%  Similarity=0.278  Sum_probs=74.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-cEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-ALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +.|...+++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+    ...+.||.+..+| .|.|.+++.+|+| .|+|.
T Consensus         8 P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~--~i~W~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~   80 (192)
T 2iep_A            8 PVITTPLETVDALVEEVATFMCAVESYPQP--EISWTRNKILI----KLFDTRYSIRENGQLLTILSVEDSDDG-IYCCT   80 (192)
T ss_dssp             EEESSCCCEEEEETTSCEEEECCEEEESCC--EEEEEETTEEC----CTTCTTEEEEGGGTEEEESSCCGGGCE-EEEEE
T ss_pred             ceeecCccceeeeCCCcEEEEeeCCCCCCC--eEEEEECCEEc----cccCccEEEcCCccEEEEcCCCcccCe-EEEEE
Confidence            457778888999999999999999665443  89999999864    2347899988766 4999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEeccccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +.|..+..  .+..+.|.|..++.+
T Consensus        81 ~~~~~~~~--~~~~~~l~v~~~p~~  103 (192)
T 2iep_A           81 ANNGVGGA--VESCGALQVKMKPKI  103 (192)
T ss_dssp             EECSSSCC--EEEEEEEEEEEEEEE
T ss_pred             EEcCCCce--eEeEEEEEEEeCCcc
Confidence            99986542  233567777765443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=4.2e-14  Score=97.20  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=71.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee---CCeeeeeeeeccCCcEEEccCC---cEEEeecC-CCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR---EGVSEARSIIHSGGRYSITTAG---ALHIRDTG-MEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k---d~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~-~~D~g   80 (114)
                      +.+...+....+.+|.++.|.|.+.+.+.++ .+.|+|   ++..++  ....++||.+..+|   .|.|.+++ .+|+|
T Consensus        84 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G  160 (184)
T 3b5h_A           84 PRVKAVKSSEHINEGETAMLVCKSESVPPVT-DWAWYKITDSEDKAL--MNGSESRFFVSSSQGRSELHIENLNMEADPG  160 (184)
T ss_dssp             CCCEESCSEEEECTTSCEEEEEECCCSSCCC-EEEEEECCSSSCEEC--CTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceeecCCCcEEcCCCcEEEEEEECCCCCCC-eEEEEEcCCCCCEEe--ecCCCCEEEEEecCCeeEEEEeeccccccCc
Confidence            5577777788899999999999998765222 899999   554321  12335899998766   79999999 99995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                       .|+|.|.|.++.   .+..+.|.|++
T Consensus       161 -~Y~C~a~N~~g~---~~~~~~l~V~~  183 (184)
T 3b5h_A          161 -QYRCNGTSSKGS---DQAIITLRVRS  183 (184)
T ss_dssp             -EEEEEEEETTEE---EEEEEEEEEC-
T ss_pred             -eEEEEEEeCCCc---ceEEEEEEEec
Confidence             999999999864   34457888865

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.53  E-value=2.6e-14  Score=104.81  Aligned_cols=95  Identities=22%  Similarity=0.315  Sum_probs=76.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--cCC--cEEEeecCCCCCCee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--TAG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~~G--~L~I~~v~~~D~gg~   82 (114)
                      .+.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+    ...+.||.+.  .+|  .|.|.+++.+|+| .
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~   76 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEI----IADGLKYRIQEFKGGYHQLIIASVTDDDAT-V   76 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCC--EEEEEETTEEC----CCCSSSEEEEEETTTEEEEEESSCCGGGCS-E
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCC--eEEEEECCEEc----ccCCCeEEEEECCCCEEEEEEccCChhhCe-E
Confidence            4678999999999999999999999765444  89999999864    2345677764  344  8999999999996 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.|.|..+.   .+..+.|.|..++.+
T Consensus        77 Y~C~a~n~~g~---~~~~~~l~V~~~p~~  102 (305)
T 2nzi_A           77 YQVRATNQGGS---VSGTASLEVEVPAKI  102 (305)
T ss_dssp             EEEEEEETTEE---EEEEEEEEECEEEEE
T ss_pred             EEEEEEcCCCC---ccceEEEEEecCCcc
Confidence            99999998543   466788998876543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.52  E-value=3.6e-14  Score=98.88  Aligned_cols=86  Identities=16%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-C---cEEEeecCCCCCCeeeEEEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-G---ALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G---~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      ..|....+.+|.++.|.|.+.+++.+  .+.|+|++..+     ..+.||.+..+ |   .|.|.+++.+|+| .|+|.|
T Consensus       122 ~~~~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a  193 (212)
T 2r15_A          122 GLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKAL-----AQTDHCNLKFEAGRTAYFTINGVSTADSG-KYGLVV  193 (212)
T ss_dssp             BCCSEEEEETTCCEEEEEEEECSSCC--EEEEEETTEEE-----CCCSSEEEEEETTTEEEEEESSCCGGGCE-EEEEEE
T ss_pred             cCCCcEEEccCCeEEEEEEEcCCCCc--eEEEEECCeEC-----ccCCCEEEEEcCCCEEEEEEcCcchHHCe-EEEEEE
Confidence            34667789999999999999876554  89999999854     45678877653 4   8999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEecc
Q psy9140          88 THKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|.++.   .+..+.|.|..|
T Consensus       194 ~N~~g~---~~~~~~l~V~~P  211 (212)
T 2r15_A          194 KNKYGS---ETSDFTVSVFIP  211 (212)
T ss_dssp             EETTEE---EEEEEEEEEECC
T ss_pred             EcCCCc---EEEEEEEEEEcc
Confidence            999764   455778888766

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.52  E-value=3.3e-14  Score=103.36  Aligned_cols=89  Identities=16%  Similarity=0.349  Sum_probs=72.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+...|.+..+.+|.++.|.|.+.+++.+  .++|+|++..+     ..+.+|.+..++   .|.|.+++.+|+| .|+
T Consensus       193 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~  264 (284)
T 2rik_A          193 PVFRKKPHPVETLKGADVHLECELQGTPPF--QVSWHKDKREL-----RSGKKYKIMSENFLTSIHILNVDSADIG-EYQ  264 (284)
T ss_dssp             CBCCSCCCCEEECTTCCEEEEEECBSSSCC--EEEEEETTEEE-----CBTTTEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             CcceeCCCcceecCCCeEEEEEEEEecCCC--EEEEEECCEEC-----cCCCCEEEEEcCCEEEEEEcCCCcccCE-EEE
Confidence            446677888899999999999999876544  89999999854     456788887654   7999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEec
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|.|.++.   .+..+.|.|++
T Consensus       265 C~a~N~~G~---~~~~~~l~V~~  284 (284)
T 2rik_A          265 CKASNDVGS---YTCVGSITLKA  284 (284)
T ss_dssp             EEEEETTEE---EEEEEEEEECC
T ss_pred             EEEEeCCCc---eeEEEEEEEcC
Confidence            999999864   45577888864

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.51  E-value=2e-14  Score=101.65  Aligned_cols=93  Identities=17%  Similarity=0.274  Sum_probs=72.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.| ..|.+..+.+|+++.|.|.+.+.+.+  .+.|+||+..+   ......|+.+..   .+.|.|.+++.+|+| .|+
T Consensus        20 P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p--~i~W~~~g~~l---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~   92 (215)
T 3mtr_A           20 PKL-QGPVAVYTWEGNQVNITCEVFAYPSA--TISWFRDGQLL---PSSNYSNIKIYNTPSASYLEVTPDSENDFG-NYN   92 (215)
T ss_dssp             EEE-ECCSEEEECTTCCEEEEEEEEEESCC--EEEEEETTEES---SCSSSCSEEEEEETTEEEEEECCCSGGGCE-EEE
T ss_pred             Ccc-cCCceEEEECCCCEEEEEEEeecCCC--EEEEEECCeEC---CCCCCccEEEecCCCeeEEEEecCChhhCe-EEE
Confidence            445 68888999999999999999775544  89999999864   222336777763   568999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.|..+.   .+..+.|.|.+++.
T Consensus        93 C~a~n~~g~---~~~~~~l~v~~~P~  115 (215)
T 3mtr_A           93 CTAVNRIGQ---ESLEFILVQADTPS  115 (215)
T ss_dssp             EEEECSSCE---EEEEEEEEECCCCC
T ss_pred             EEEEECCCc---eEEEEEEEECCCCC
Confidence            999999864   34567788775544

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.51  E-value=1.2e-13  Score=95.54  Aligned_cols=91  Identities=26%  Similarity=0.388  Sum_probs=71.8

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCeeeeeeeeccCCcEEEccCC---cEEEeecC-CCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVSEARSIIHSGGRYSITTAG---ALHIRDTG-MEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~-~~D~gg   81 (114)
                      +.+...+.+..+.+|.++.|.|.+.+++.+  .++|+|  ++..+  .....++||.+..++   .|.|.+++ .+|+| 
T Consensus        93 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~g~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-  167 (190)
T 2wv3_A           93 PDITGHKRSENKNEGQDAMMYCKSVGYPHP--EWMWRKKENGVFE--EISNSSGRFFIINKENYTELNIVNLQITEDPG-  167 (190)
T ss_dssp             CEEEEECSEEEEETTSCEEEEEEEECSSCC--EEEEEEEETTEEE--ECCCTTSCEEEEECSSEEEEEECSCCTTTSCE-
T ss_pred             CcccccCCcceeeCCCcEEEEEEeCccCCC--ceEEEEcCCCcee--eeecCCCeEEEecCCCeeEEEEEeccccCCCE-
Confidence            557777888899999999999999776554  899999  66643  122367899987654   69999999 79995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|+|.|.|.++.   .+..+.|.|+
T Consensus       168 ~Y~C~a~N~~g~---~~~~~~l~V~  189 (190)
T 2wv3_A          168 EYECNATNSIGS---ASVSTVLRVR  189 (190)
T ss_dssp             EEEEEEECSSCE---EEEEEEEEEE
T ss_pred             EEEEEEEecCCc---ceeEEEEEEE
Confidence            999999999864   4556677775

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.51  E-value=2.2e-14  Score=98.71  Aligned_cols=88  Identities=19%  Similarity=0.317  Sum_probs=71.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+...+.+..+.+|.++.|.|.+.+++.+  .++|+|++..+     ..+.+|.+..+|   .|.|.+++.+|+| .|+
T Consensus       104 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~  175 (194)
T 2a38_A          104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTP--VVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSG-TYS  175 (194)
T ss_dssp             EEEEECCCCEEECTTEEEEEEEEEEEESCC--EEEEEETTEEC-----CCSSSEEEEEETTEEEEEEEEECGGGCE-EEE
T ss_pred             CEEEeCCccEEEcCCCEEEEEEEEEEecCC--eEEEEECCEEC-----CCCCcEEEEEcCCEEEEEECCCChhcCe-EEE
Confidence            446677888899999999999999765444  79999999854     456788887766   6999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEe
Q psy9140          85 CQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |.|.|.++.   .+..+.|.|+
T Consensus       176 C~a~n~~g~---~~~~~~l~V~  194 (194)
T 2a38_A          176 VNATNSVGR---ATSTAELLVQ  194 (194)
T ss_dssp             EEEEETTEE---EEEEEEEEEC
T ss_pred             EEEEeCCCc---eEEEEEEEEC
Confidence            999998764   4556777764

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.51  E-value=2.5e-13  Score=88.65  Aligned_cols=97  Identities=23%  Similarity=0.365  Sum_probs=70.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee--eccCCcEEEccCC------cEEEeecC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI--IHSGGRYSITTAG------ALHIRDTG   75 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~--~~~~~r~~v~~~G------~L~I~~v~   75 (114)
                      .....|.+..+.+|++|.|.|.+.+.. +  .+.|+|.+  ..   ++...  ...++||.+..++      .|.|++++
T Consensus         3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~-~--~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   79 (113)
T 1h5b_A            3 QVEQSPSALSLHEGTDSALRCNFTTTM-R--SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQ   79 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESSCC-S--EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCC
T ss_pred             ceEECCCEEEEecCCcEEEEEEECCCC-c--eEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCC
Confidence            455678889999999999999986532 2  79999864  21   11100  1246899986554      89999999


Q ss_pred             CCCCCeeeEEEEeeccCC-cEEeCCCeEEEEeccc
Q psy9140          76 MEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSEIA  109 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~~~  109 (114)
                      .+|+| .|.|.+.|..+. .......++|.|.+.+
T Consensus        80 ~~DsG-~Y~C~~~n~~~~~~~~fg~gT~L~V~~~~  113 (113)
T 1h5b_A           80 LEDSG-TYFCAAEASSGSWQLIFGSGTQLTVMPVT  113 (113)
T ss_dssp             GGGCE-EEEEEEECSSSSSSCEECCCEEEEEECCC
T ss_pred             hhhCE-EEEEEEecCCCCcEEEECCCcEEEEEECC
Confidence            99995 999999997532 2345668899998754

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.51  E-value=1e-13  Score=89.12  Aligned_cols=94  Identities=17%  Similarity=0.216  Sum_probs=66.0

Q ss_pred             ccceeEEEeCCeEEEEeec-CCCCCCc-c-eEEEeeCCeeeeeee--------eccCCcEEEcc--------CCcEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNI-PAYNHNL-L-LIAWLREGVSEARSI--------IHSGGRYSITT--------AGALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~-~~~~~~~-~-~vsW~kd~~~~~~~~--------~~~~~r~~v~~--------~G~L~I~~   73 (114)
                      .|.+..+.+|.+|.|+|.+ .+...+. . .+.|+|++.......        ....+|+.+..        +++|.|++
T Consensus         6 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (118)
T 3udw_C            6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECS
T ss_pred             CCCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEee
Confidence            4556889999999999998 4433332 3 599999853211000        12267888876        67999999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      ++.+|+| .|+|.+.+.-.+  ..+..+.|.|..++
T Consensus        86 v~~~D~G-~Y~C~v~~~~~~--~~~~~~~L~V~~~P  118 (118)
T 3udw_C           86 LRVEDEG-NYTCLFVTFPQG--SRSVDIWLRVLAKP  118 (118)
T ss_dssp             CCGGGCE-EEEEEEEEETTE--EEEEEEEEEEEC--
T ss_pred             cChHHCe-EEEEEEEECCCC--CccceEEEEEEeCC
Confidence            9999995 999999984222  35667889888653

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.51  E-value=7.1e-14  Score=96.14  Aligned_cols=95  Identities=16%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEc----cCCcEEEeecCCCCCCeee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSIT----TAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y   83 (114)
                      .|.+.|++..+.+|+++.|.|.+.+.+.+ ..+.|+| |+..+    ...+.||.+.    .++.|.|.+++.+|+| .|
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~-~~v~W~~~~g~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y   77 (191)
T 1epf_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAKD-KDISWFSPNGEKL----SPNQQRISVVWNDDDSSTLTIYNANIDDAG-IY   77 (191)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCC-CEEEEECTTSCEE----CCBSSSEEEEEEETTEEEEEECSCCGGGCE-EE
T ss_pred             EEEecCCCcEEcCCCCEEEEEECCCCCCC-ceEEEEeCCCccc----cCCCCeEEEEECCCCceEEEEccCCcccCE-EE
Confidence            57889999999999999999999775421 2899999 77653    2356788875    3478999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|.+.|..++  ..+....|.|..++.+
T Consensus        78 ~C~~~~~~~~--~~~~~~~l~v~~~p~~  103 (191)
T 1epf_A           78 KCVVTAEDGT--QSEATVNVKIFQKLMF  103 (191)
T ss_dssp             EEEEEETTTE--EEEEEEEEEEECCSEE
T ss_pred             EEEEEcCCCc--ceEEEEEEEeecCceE
Confidence            9999998643  3555778888766544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.51  E-value=1.1e-13  Score=97.33  Aligned_cols=94  Identities=19%  Similarity=0.298  Sum_probs=75.2

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--CC--cEEEeecCC-CCCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT--AG--ALHIRDTGM-EDSY   80 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--~G--~L~I~~v~~-~D~g   80 (114)
                      -.+.|...|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+    ...+.||.+..  +|  .|.|.+++. +|+|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~--~v~W~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G   78 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPP--SIVWRKNGKKV----SGTQSRYTVLEQPGGISILRIEPVRAGRDDA   78 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEEC----CTTSTTEEEEEETTTEEEEEESSCCTTTTCS
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCC--eEEEEECCEEC----CCCcceeEEEEcCCCeEEEEEEecCCCCcCc
Confidence            35678999999999999999999999765444  89999999864    23567888753  44  799999999 9995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                       .|+|.|.|..+..  .+..+.|.|..+
T Consensus        79 -~Y~C~~~n~~g~~--~~~~~~l~V~~~  103 (212)
T 2yd1_A           79 -PYECVAENGVGDA--VSADATLTIYEG  103 (212)
T ss_dssp             -EEEEEEECSSSCE--EEEEEEEEEECT
T ss_pred             -eEEEEEEeCCCCe--EEeeEEEEEecc
Confidence             9999999987542  455778888764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.51  E-value=1.3e-14  Score=110.07  Aligned_cols=91  Identities=14%  Similarity=0.250  Sum_probs=76.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|.++.|.|.+.+++.+  .++|+|++..+     ..+.++.+..++.|.|.+++.+|+| .|+|.|
T Consensus       313 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~g~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a  384 (403)
T 3laf_A          313 PWFLNHPSNLYAYESMDIEFECAVSGKPVP--TVNWMKNGDVV-----IPSDYFQIVGGSNLRILGVVKSDEG-FYQCVA  384 (403)
T ss_dssp             EEEEECCCCEECCTTCCEEECCEEEEESCC--EEEEEETTEEC-----CCSSSEEEETTTEEEESSCCGGGCE-EEEEEE
T ss_pred             CcEeecCcceEEecCCeEEEEEEEeeccCC--EEEEEECCEEC-----CCCCcEEEecCccEEEeccccccCE-EEEEEE
Confidence            457788888999999999999999776544  89999999853     4567888888899999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|.++.   .+..+.|.|++|+
T Consensus       385 ~N~~G~---~~~~~~l~V~~P~  403 (403)
T 3laf_A          385 ENEAGN---AQSSAQLIVPKPA  403 (403)
T ss_dssp             EETTEE---EEEEEEEECCCC-
T ss_pred             EcCCce---EEEEEEEEEeCCC
Confidence            999864   4667899999874

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.50  E-value=1.5e-14  Score=103.93  Aligned_cols=86  Identities=10%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      +.|...+ +..+.+|.++.|.|.+.+. +.+  .++|+||+..+     ..+.||.... .+.|.|.+++.+|+| .|+|
T Consensus       118 P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p--~i~W~k~g~~l-----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C  188 (207)
T 3rbs_A          118 PHFVEYL-SWEVTGECNVLLKCKVANIKKET--HIVWYKDEREI-----SVDEKHDFKDGICTLLITEFSKKDAG-IYEV  188 (207)
T ss_dssp             SEEEEEE-EEEEETTTEEEEEEEEESCCTTC--EEEEEETTEEE-----CCCCCCCCSSEEEEEEETTCCGGGCE-EEEE
T ss_pred             CceEecC-CcEEcCCCcEEEEEEEeCCCCCC--EEEEEECCEEC-----CCCCceEcCCCEEEEEECCCCcccCE-EEEE
Confidence            3454444 6889999999999999765 333  89999999864     3455764432 236999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEE
Q psy9140          86 QTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|.|.++.   .+..++|.+
T Consensus       189 ~a~N~~G~---~~~~~~L~~  205 (207)
T 3rbs_A          189 ILKDDRGK---DKSRLKLVD  205 (207)
T ss_dssp             EEEETTEE---EEEEEEECC
T ss_pred             EEEcCCCE---EEEEEEEec
Confidence            99999864   455666654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.50  E-value=1.1e-13  Score=104.85  Aligned_cols=101  Identities=22%  Similarity=0.324  Sum_probs=79.8

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-----CCCCCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-----GMEDSY   80 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-----~~~D~g   80 (114)
                      ....|..+|++..+.+|+++.|.|.+.+.... ..+.|+||+..+   ....+.|+.+..+|.|.|.++     +.+|+ 
T Consensus        20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~-~~v~W~k~g~~~---~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~-   94 (403)
T 3laf_A           20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGV-PVIKWKKDGLIL---ALGMDDRKQQLPNGSLLIQNILHSRHHKPDE-   94 (403)
T ss_dssp             CSSEEEECCCCEEECTTCCEEECCEEECTTCC-CEEEEEETTEEC---CTTSCTTEEECTTSCEEECSCCCBTTBCSSC-
T ss_pred             eeEEEEeCCCceEEecCCcEEEEEEcCCCCCC-ceEEEEECCEEC---ccCCcccEEEecCCcEEEeeeeccCCCCCcc-
Confidence            34668999999999999999999998653111 189999999865   234578999999999999999     77899 


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |.|+|.|.|...+ ...+..+.|.|..|..++
T Consensus        95 G~Y~C~~~~~~~~-~~~s~~~~l~v~~p~~~~  125 (403)
T 3laf_A           95 GLYQCEASLGDSG-SIISRTAKVMVAGPLRFL  125 (403)
T ss_dssp             EEEEEEEECGGGC-EEECCCEEEEECCCCEEC
T ss_pred             eEEEEEEEeCCCc-cEEEEEEEEEecCCCccc
Confidence            5999999976444 345668899998776554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.50  E-value=4.2e-14  Score=110.98  Aligned_cols=95  Identities=14%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|.++.|.|.+ +.+.+  .++|.++++.++. ....++|+.+..+|+|.|.+|+.+|+| .|+|.|
T Consensus       342 P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p--~i~W~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a  416 (440)
T 3zyj_A          342 PVIVEPPADLNVTEGMAAELKCRA-STSLT--SVSWITPNGTVMT-HGAYKVRIAVLSDGTLNFTNVTVQDTG-MYTCMV  416 (440)
T ss_dssp             CCEEECCCCEEECTTSCCEECCEE-SSTTS--EEEEECTTSCEEE-SSSCCSSEEECTTCCEEESSCCSTTCE-EEEEEE
T ss_pred             CcccccccceeeccCceEEEEeec-CCCCC--ceEEEeCCCceee-ccCCCceEEEccCCeEEEccCChhhCE-EEEEEE
Confidence            456777889999999999999999 43333  8999997665432 122356999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEecccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .|..+.   .+..+.+.|.+++.
T Consensus       417 ~N~~G~---~~~~~~~~v~~~~~  436 (440)
T 3zyj_A          417 SNSVGN---TTASATLNVTGTHH  436 (440)
T ss_dssp             ECSSCE---EEEEEEEEEC----
T ss_pred             EcCCCc---EEEEEEEEEecccc
Confidence            999764   56678888887653

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.50  E-value=2.9e-13  Score=87.55  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee----eccCCcEEEccC---CcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI----IHSGGRYSITTA---GALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~----~~~~~r~~v~~~---G~L~I~~v~~~   77 (114)
                      +...|++..+.+|.+|.|.|.+.+.+.+  .+.|+|++.     .++...    ....+||.+..+   ..|.|++++.+
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASKSISK--SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE   81 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT
T ss_pred             eeccCCeeEEcCCCCEEEEeEECCCCCc--eEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHH
Confidence            4556888999999999999999765433  799999642     121100    012579988643   47999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|.|.|.|.  ........++|.|+
T Consensus        82 DsG-~Y~C~~~n~--~~~~fg~gt~L~V~  107 (108)
T 1jhl_L           82 DFA-MYICQQHNE--YPWTFGGGTKLEIK  107 (108)
T ss_dssp             CCS-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             HCE-EEEEEEccC--CccEECCCEEEEEE
Confidence            996 999999996  23345678899886

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.50  E-value=5.5e-14  Score=90.90  Aligned_cols=80  Identities=8%  Similarity=0.055  Sum_probs=61.7

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE----c----cCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI----T----TAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v----~----~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      ..|..+.|.|.+.+++.|  .++|+||+..+     ..+.++.+    .    .+|.|.|.+++.+|+| .|+|.|.|.+
T Consensus        14 ~~~~~~~~~c~v~G~P~P--~i~W~k~g~~l-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~   85 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKP--ALQWFYNGAIL-----NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG-DYTLIAKNEY   85 (103)
T ss_dssp             CCCCEEEEEEEEECSSCC--EEEEEETTEEE-----CCCSSEEEEEEEECSSEEEEEEEEESCCGGGCE-EEEEEEECSS
T ss_pred             eECcEEEEEEEEEEeCCC--EEEEEECCEEC-----CCCCcEeEEEEecCCcEEEEEEEECCCCcccCE-EEEEEEEeCC
Confidence            468899999999887666  89999999864     33344311    1    1345999999999995 9999999998


Q ss_pred             CCcEEeCCCeEEEEecccc
Q psy9140          92 TGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        92 ~~~~~~s~~a~L~V~~~~~  110 (114)
                      +.   .+..++|.|.+++.
T Consensus        86 G~---~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           86 GK---DEKQISAHFMGWPG  101 (103)
T ss_dssp             CE---EEEEEEECCSCCCC
T ss_pred             Cc---EeEEEEEEECCCCC
Confidence            74   56678888887765

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.49  E-value=1.1e-13  Score=94.14  Aligned_cols=99  Identities=17%  Similarity=0.287  Sum_probs=69.9

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeeeeccCCcEEEccCCc---EEEeecCCCCCCe
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSITTAGA---LHIRDTGMEDSYI   81 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~~~~~~r~~v~~~G~---L~I~~v~~~D~gg   81 (114)
                      .+.+...|++..+.+|++|.|.|.+.+.  +  .+.|+|+.  ..+.. ....++||.+..+|.   |.|++++.+|+| 
T Consensus        17 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~--~--~v~W~r~~~g~~~~~-l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG-   90 (133)
T 3khq_A           17 CSQIWQHPRFAAKKRSSMVKFHCYTNHS--G--ALTWFRKRGSQQPQE-LVSEEGRIVQTQNGSVYTLTIQNIQYEDNG-   90 (133)
T ss_dssp             CCSEEEECSEEEECTTCCEEEEEEESSS--S--CEEEEEECTTSCCEE-CCCTTTTEEEEEETTEEEEEECSCCGGGCE-
T ss_pred             CCceEEcCceEEEeCCCeEEEEEEeCCC--C--EEEEEEeCCCCCCEE-EEEeCCCEEEEcCCCEEEEEECCCChHHCE-
Confidence            3456778999999999999999999765  3  68999973  22100 123578999876664   999999999995 


Q ss_pred             eeEEEEeeccCC-cEEeCCCeEEEEeccccc
Q psy9140          82 RYYCQTTHKLTG-ERKISPPSQVMVSEIALP  111 (114)
Q Consensus        82 ~Y~C~a~n~l~~-~~~~s~~a~L~V~~~~~~  111 (114)
                      .|.|.+.|..+. ....+..++|.|.+++.+
T Consensus        91 ~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~~  121 (133)
T 3khq_A           91 IYFCKQKCDSANHNVTDSCGTELLVLGFSTL  121 (133)
T ss_dssp             EEEEEESSCC-------CCCEEEEEC-----
T ss_pred             EEEEEEEeCCCCcceeECCCEEEEEEecccc
Confidence            999999997532 223467899999976543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.49  E-value=2.4e-14  Score=112.72  Aligned_cols=87  Identities=22%  Similarity=0.343  Sum_probs=68.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      ..|++..|.+|.+|.|.|.+.+.+.|  .++|.|++..+.  .....+|+.+.++|.|.|.+|+.+|+| .|+|.|.|..
T Consensus       390 ~~~~~~~v~~G~~v~l~C~~~g~P~p--~i~W~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~  464 (477)
T 2id5_A          390 RKAQQVFVDEGHTVQFVCRADGDPPP--AILWLSPRKHLV--SAKSNGRLTVFPDGTLEVRYAQVQDNG-TYLCIAANAG  464 (477)
T ss_dssp             CSCEEEEEETTCCEEECCCEEEESCC--EEEEECTTSCBC---------CEECTTSCEEESSCCSTTCE-EEEEEEEETT
T ss_pred             cccccEEEeCCCeEEEEEeccccCCC--EEEEEECCcccc--ccCCCceEEeCCCCEEEEeeCChHHCE-EEEEEEEeCC
Confidence            34688899999999999999776555  899999998652  123568999999999999999999995 9999999987


Q ss_pred             CCcEEeCCCeEEEEe
Q psy9140          92 TGERKISPPSQVMVS  106 (114)
Q Consensus        92 ~~~~~~s~~a~L~V~  106 (114)
                      +.   .+..++|.|+
T Consensus       465 g~---~~~~~~l~V~  476 (477)
T 2id5_A          465 GN---DSMPAHLHVR  476 (477)
T ss_dssp             EE---EEEEEEEEEE
T ss_pred             Cc---EEEEEEEEEe
Confidence            54   4667788876

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.49  E-value=3.3e-14  Score=114.52  Aligned_cols=94  Identities=15%  Similarity=0.296  Sum_probs=77.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...|.+..+.+|.++.|.|.+.+.+.+  .++|+||+..+     ..+.||.+..++   .|.|.+|+.+|+| .|+
T Consensus       385 P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~  456 (570)
T 3b43_A          385 PVFRKKPHPVETLKGADVHLECELQGTPPF--QVSWHKDKREL-----RSGKKYKIMSENFLTSIHILNVDSADIG-EYQ  456 (570)
T ss_dssp             CEECSCCCCEEECTTCCEEEEEEEESSSSC--CCEEEETTEEC-----CSSSSEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             CeeecCCCceeecCCCEEEEEEEEecCCCC--EEEEEECCEEC-----cCCCCEEEEEcCCEEEEEECCCChhhCE-EEE
Confidence            447778889999999999999999876544  79999999853     467788887543   7999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |.|.|.++.   .+..+.|.|+.|+.++
T Consensus       457 C~A~N~~G~---~~~~~~l~v~~~P~~~  481 (570)
T 3b43_A          457 CKASNDVGS---DTCVGSITLKAPPRFV  481 (570)
T ss_dssp             EEEECSSCE---EEEEEEEEECCCCEEE
T ss_pred             EEEEECCCe---EEEEEEEEeccCCccc
Confidence            999999875   3457889999887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.49  E-value=7e-14  Score=107.68  Aligned_cols=89  Identities=16%  Similarity=0.238  Sum_probs=70.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      +.+.+..+.+|++|.|.|.+.+ +.+  .++|.|++..++.. ...+.||.+ .+|.|.|.+|+.+|+| .|+|.|.|..
T Consensus       251 ~~~~~v~v~~G~~~~l~C~~~g-p~p--~i~W~~~~~~~~~~-~~~~~r~~~-~~~~L~I~~v~~~D~G-~Y~C~a~N~~  324 (361)
T 2xot_A          251 YKESAWEAHLGDTLTIRCDTKQ-QGM--TKVWVSPSNEQVLS-QGSNGSVSV-RNGDLFFKKVQVEDGG-VYTCYAMGET  324 (361)
T ss_dssp             CCCCCCEEETTCCEEECCCCSS-TTC--EEEEECTTSCBCCS-CCSSSSEEE-ETTEEEESSCCTTSCE-EEEEEEECSS
T ss_pred             ccccCceecCCCeEEEEeEeeC-CCC--eEEEEeCCCeeEee-cccCCceEe-ecCeEEEeecCcccCE-EEEEEEecCC
Confidence            4577889999999999999976 433  78999987754321 133468999 8999999999999995 9999999986


Q ss_pred             CCcEEeCCCeEEEEeccc
Q psy9140          92 TGERKISPPSQVMVSEIA  109 (114)
Q Consensus        92 ~~~~~~s~~a~L~V~~~~  109 (114)
                      +.   .+..+.|.|.+++
T Consensus       325 g~---~~~~~~l~V~~~~  339 (361)
T 2xot_A          325 FN---ETLSVELKVYNFT  339 (361)
T ss_dssp             CE---EEEEEEEEEESSC
T ss_pred             Cc---cEEEEEEEEEeee
Confidence            53   4567888887654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.49  E-value=7.6e-14  Score=96.07  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...+.+..+.+|.++.|.|.+.+++.+  .++|+|++..+     ..+ ......++.|.|.+++.+|+| .|+|.|
T Consensus       114 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~~~~~-----~~~-~~~~~~~~~L~i~~v~~~d~G-~Y~C~a  184 (201)
T 3s97_C          114 ADIVVQFKDVYALMGQNVTLECFALGNPVP--DIRWRKVLEPM-----PST-AEISTSGAVLKIFNIQLEDEG-IYECEA  184 (201)
T ss_dssp             EEEEEECCCEEEETTCCEEEEEEEEEESCC--EEEEEETTBCC-----CTT-CEEETTTTEEEECSCCGGGCE-EEEEEE
T ss_pred             CceEecCCceEEecCCcEEEEEEccCCCCC--ceEEEeCCCcC-----CCc-eeecCCCCEEEEccCChhhCE-EEEEEE
Confidence            346677778899999999999999765444  89999999853     223 333445789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|.++.   .+..+.|.|++
T Consensus       185 ~n~~g~---~~~~~~l~V~a  201 (201)
T 3s97_C          185 ENIRGK---DKHQARIYVQA  201 (201)
T ss_dssp             EETTEE---EEEEEEEEEEC
T ss_pred             EecCCc---eeeeEEEEEeC
Confidence            998764   45577888763

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=100.22  Aligned_cols=91  Identities=14%  Similarity=0.295  Sum_probs=69.0

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--cCC---cEEEeecCC-CCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--TAG---ALHIRDTGM-EDS   79 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~~G---~L~I~~v~~-~D~   79 (114)
                      ..+.|...|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+      .+.|+.+.  .+|   .|.|.+++. +|+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~--~i~W~k~g~~i------~~~~~~~~~~~~~~~~~L~i~~~~~~~D~   76 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKP--RVTWNKKGKKV------NSQRFETIEFDESAGAVLRIQPLRTPRDE   76 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEC-------------CTTEEEEEETTTTEEEEEECSCCTTTTC
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCC--eEEEEECCEEC------CCCceEEEEecCCCceEEEEecccccCCC
Confidence            45679999999999999999999999765444  89999999853      34566654  344   599999998 999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      | .|+|.|.|..+.   .+..+.|.|..+
T Consensus        77 G-~Y~C~a~n~~g~---~~~~~~l~V~~~  101 (304)
T 2yd9_A           77 N-VYECVAQNSVGE---ITVHAKLTVLRE  101 (304)
T ss_dssp             S-EEEEEEECSSCE---ECCEEEEEEECG
T ss_pred             e-EEEEEEECCCCe---EEEEEEEEEecc
Confidence            5 999999998653   577889999865

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.48  E-value=8e-14  Score=101.38  Aligned_cols=97  Identities=21%  Similarity=0.249  Sum_probs=76.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|...|.+..+.+|.++.|.|.+.+.+.+  .+.|+|++..+   ....+.||.+..+|.|.|.+++.+|+| .|+|.|
T Consensus       101 ~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--~v~W~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a  174 (291)
T 1qz1_A          101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDV---ILKKDVRFIVLSNNYLQIRGIKKTDEG-TYRCEG  174 (291)
T ss_dssp             SEEEECCSSEEEETTSCEEECCEEECSSCC--EEEEEETTSCS---STTCCTTEEECTTSCEEETTCCGGGCE-EEEEEE
T ss_pred             ccccCCCCcccccCCCeEEEEEEeccCCCC--EEEEEECCEEc---ccCCCceEEEccCCcEEEccCccccCe-EEEEEE
Confidence            446778888999999999999999776444  89999999864   234578999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|..++. ..+....|.|..++.+
T Consensus       175 ~n~~~~~-~~~~~~~l~v~~~p~~  197 (291)
T 1qz1_A          175 RILARGE-INFKDIQVIVNVPPTV  197 (291)
T ss_dssp             EEGGGTE-EEEEEEEEEEEEEEEE
T ss_pred             EecCCCc-eeeEEEEEEEecCCcc
Confidence            9986553 2233566777655443

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=101.16  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=70.3

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-C---cEEEeecCCCCCCeeeEEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-G---ALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G---~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .|....+.+|+++.|.|.+.+++.+  .+.|+|++..+     ..+.||.+..+ |   .|.|.+++.+|+| .|+|.|.
T Consensus       228 ~~~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~  299 (317)
T 2y25_A          228 LPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKAL-----ASDDHCNLKFEAGRTAYFTINGVSTADSG-KYGLVVK  299 (317)
T ss_dssp             CCSEEEEETTSBBCEEEEEECSSCC--EEEEEESSSEE-----CCCSSEEECCBTTTEEEEEEBSCCSTTCE-EEEEEEE
T ss_pred             CCccEEEEcCCEEEEEEEEecCCCC--EEEEEECCEeC-----CCCCcEEEEEcCCCEEEEEECCCCHHHCE-EEEEEEE
Confidence            3556789999999999999876544  89999999854     56778888765 6   8999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEecc
Q psy9140          89 HKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |..+.   .+..+.|.|..|
T Consensus       300 N~~g~---~~~~~~l~V~~P  316 (317)
T 2y25_A          300 NKYGS---ETSDFTVSVFIP  316 (317)
T ss_dssp             ETTEE---EEEEEEEEEECC
T ss_pred             eCCCe---EEEEEEEEEEcC
Confidence            99764   466788888765

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.47  E-value=4.8e-14  Score=108.04  Aligned_cols=92  Identities=18%  Similarity=0.304  Sum_probs=70.6

Q ss_pred             ccceeeccceeEE---EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-CCCCCCee
Q psy9140           7 SSDYEINTGNTFV---LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-GMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v---~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-~~~D~gg~   82 (114)
                      .|.|..+|++..+   .+|+.+.|.|.+.+++.+  .++|+||+..+   ....+.||.+ .+|.|.|.++ +.+|+ |.
T Consensus         5 ~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p--~i~W~k~g~~l---~~~~~~~~~~-~~g~l~i~~~~~~~D~-G~   77 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKP--HIRWKLNGTDV---DIGMDFRYSV-VDGSLLINNPNKTQDA-GT   77 (384)
T ss_dssp             EEEEEECCCCEEEETTCSCSEEEECCEEEEESCC--EEEEEETTEEC---CC----CEEE-ETTEEEEESCCHHHHC-EE
T ss_pred             CCEEEeCCcceEeecCCCCCeEEEEeEecCCCCC--EEEEEECCEEC---cCCCCccEEE-ECCEEEEcCCCCcccC-EE
Confidence            4679999999987   689999999999776555  89999999865   2234567766 4899999997 78899 59


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+|.|.|..+.  ..+..+.|.|..
T Consensus        78 Y~C~A~N~~G~--~~s~~~~l~v~~  100 (384)
T 3kld_A           78 YQCIATNSFGT--IVSREAKLQFAY  100 (384)
T ss_dssp             EEEEEEETTEE--EECCCEEEEEEE
T ss_pred             EEEEEEcCccc--EEecceEEEEec
Confidence            99999998753  346677777754

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.47  E-value=2.8e-13  Score=94.24  Aligned_cols=94  Identities=17%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee--------------eeeccCCcEEEccCCcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR--------------SIIHSGGRYSITTAGALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~--------------~~~~~~~r~~v~~~G~L~I~~v~   75 (114)
                      +.+.|....+.+|+++.|.|...+...+  .+.|+|++.....              ......+|+.+..+|.|.|.+++
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~   79 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALG--AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT   79 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCS--EEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCC
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCce--EEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccc
Confidence            5778888999999999999997553222  8999998542100              00113679999999999999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+| .|+|.+.|..++  ..+....|.|.++
T Consensus        80 ~~D~G-~Y~C~~~~~~~~--~~~~~~~l~V~~~  109 (208)
T 3r4d_A           80 MKDMG-VYTLDMTDENYR--RTQATVRFHVHQP  109 (208)
T ss_dssp             GGGCE-EEEEEEECSSCE--EEEEEEEEEEECC
T ss_pred             ccCCe-EEEEEEEcccCc--eeEEEEEEEeccC
Confidence            99995 999999997433  3455777888765

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.47  E-value=1.4e-13  Score=98.01  Aligned_cols=90  Identities=17%  Similarity=0.303  Sum_probs=66.7

Q ss_pred             ceeeccceeEEE-eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEEE
Q psy9140           9 DYEINTGNTFVL-RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         9 ~~~v~~~d~~v~-~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .++++|++..+. +|.++.|.|.+.+.+.+  .++|.|+...    .  ..++.... .++.|.|.+|+.+|+| .|+|.
T Consensus         2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p--~i~W~~~~~~----~--~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~   72 (202)
T 1vca_A            2 KIETTPESRYLAQIGDSVSLTCSTTGCESP--FFSWRTQIDS----P--LNGKVTNEGTTSTLTMNPVSFGNEH-SYLCT   72 (202)
T ss_dssp             EEEEESSSEEEEETTSCEEEEEEEESCSSC--EEEEEETTCC----C--CSSEEEEETTEEEEEESSCCGGGCS-EEEEE
T ss_pred             eEEECCCCcEEEcCCCcEEEEEeecCCCCC--eEEEECCCCC----C--ccceEEEcCCccEEEECcCCHHHCE-EEEEE
Confidence            367888888766 99999999999876544  7999995431    1  12333322 3467999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|..+   ..+..+.|.|..++.
T Consensus        73 a~n~~~---~~~~~~~l~V~~~p~   93 (202)
T 1vca_A           73 ATCESR---KLEKGIQVEIYSFPK   93 (202)
T ss_dssp             EEETTE---EEEEEEEEEEEBCCS
T ss_pred             EEECCc---eEeeEEEEEEEeCCC
Confidence            999753   356688999987654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.47  E-value=3.6e-14  Score=111.73  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|++..+.+|.+++|+|.+.  +.|  .++|.++++.++. ....++|+.+..+|+|.|.+|+.+|+| .|+|.|
T Consensus       353 P~i~~~~~~~~v~~G~~~~l~C~~~--p~p--~i~W~~~~~~~~~-~~~~~~~~~~~~~g~L~i~~v~~~D~G-~Y~C~a  426 (452)
T 3zyi_A          353 PFIMDAPRDLNISEGRMAELKCRTP--PMS--SVKWLLPNGTVLS-HASRHPRISVLNDGTLNFSHVLLSDTG-VYTCMV  426 (452)
T ss_dssp             CCCSBCCCCEECCTTSCCEECCBCC--TTS--EEEEECTTSCEEC-SSCCCSSCEECTTSCEECSSCCTTCCE-EEEEEE
T ss_pred             cccccccccccccCCCEEEEEEeCC--CCC--cEEEEeCCCcEec-cCCCCCCEEECCCCeEEEeecCHHHCE-EEEEEE
Confidence            4566788899999999999999985  333  8999997665321 122456999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|..+.   .+..+.|.|.+....
T Consensus       427 ~N~~G~---~~~~~~l~v~~~~~~  447 (452)
T 3zyi_A          427 TNVAGN---SNASAYLNVSTAGTH  447 (452)
T ss_dssp             ECSSCE---EEEEEEEEC------
T ss_pred             EcCCCc---EEEEEEEEEEccccc
Confidence            998764   466788888876653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.47  E-value=1.3e-13  Score=95.70  Aligned_cols=98  Identities=10%  Similarity=0.113  Sum_probs=74.5

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-------eeeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-------SIIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      .|...|.+..+.+|.++.|.|.+.+.+.+  .+.|+|++..+..       .....+.|+.+. ++.|.|.+++.+|+| 
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G-   78 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNG-   78 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSE--EEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCE-
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCc--EEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCe-
Confidence            46778889999999999999999764322  8999999875321       012346788877 499999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|+|.|.|..+ ....+....|.|..++.+
T Consensus        79 ~Y~C~~~~~~g-~~~~~~~~~l~V~~~p~~  107 (212)
T 1f97_A           79 EYTCMVSEEGG-QNYGEVSIHLTVLVPPSK  107 (212)
T ss_dssp             EEEEEEEETTS-SSEEEEEEEEEEEBCCCC
T ss_pred             EEEEEEEccCC-CcccEEEEEEEEEcCCCC
Confidence            99999999754 223455778888876654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.47  E-value=7.6e-14  Score=95.56  Aligned_cols=79  Identities=9%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--c--------cCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--T--------TAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~--------~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +|..+.|.|.+.|+++|  .|+|+|||..|     ..+.|+.+  .        ..|.|.|.+++.+|+| .|+|.|.|.
T Consensus        14 ~~~~~~l~c~v~G~P~P--~I~W~knG~~l-----~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~YtC~A~N~   85 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAP--SLRWLFNGSVL-----NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG-NYTLLAANP   85 (126)
T ss_dssp             CCCEEEEEEEECCSSCC--EEEEEETTEEC-----CCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCE-EEEEEEEET
T ss_pred             cCccEEEEEEEeeeCCC--eEEEEECCEEC-----CCCCceeEEEeeccccccccceEEEECcCCCCCCE-EEEEEEEEC
Confidence            78899999999998776  89999999864     34455432  1        1478999999999995 999999999


Q ss_pred             cCCcEEeCCCeEEEEecccc
Q psy9140          91 LTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~~~~~  110 (114)
                      ++.   .+..+.|.|.+.+.
T Consensus        86 ~G~---~~~t~~l~v~~~P~  102 (126)
T 1he7_A           86 FGQ---ASASIMAAFMDNPF  102 (126)
T ss_dssp             TEE---EEEEEEECCCSCTT
T ss_pred             CCe---EEEEEEEEEEcCCC
Confidence            874   45567777765443

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=5.9e-14  Score=91.86  Aligned_cols=93  Identities=8%  Similarity=0.048  Sum_probs=64.1

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-------cCCcEEEeecCCC
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-------TAGALHIRDTGME   77 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-------~~G~L~I~~v~~~   77 (114)
                      |..++.-+..++..+  +..+.|.|.+.+++.+  .+.|+||+..+     ..+.++.+.       .++.|.|.+++.+
T Consensus         5 V~~pP~i~~~~~~~~--~~~~~l~C~~~g~P~p--~i~W~k~g~~l-----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   75 (118)
T 1wwc_A            5 VYYPPRVVSLEEPEL--RLEHCIEFVVRGNPPP--TLHWLHNGQPL-----RESKIIHVEYYQEGEISEGCLLFNKPTHY   75 (118)
T ss_dssp             CCCCCCCCCCCCCCC--CCEEEEEEEEECSSCC--EEEEEETTEEC-----CCSSSEEEEEEECSSEEEEEEEEESCCGG
T ss_pred             EecCCceeccCCCee--ccceEEEEEeeeeCCC--eEEEEECCEEC-----CCCCceeEEEeccCccccEEEEECCCChh
Confidence            333443333344433  3667899999886555  89999999864     334444442       3578999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+| .|+|.|.|.++.   .+..+.|.|.+++.
T Consensus        76 d~G-~Y~C~a~N~~G~---~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           76 NNG-NYTLIAKNPLGT---ANQTINGHFLKEPF  104 (118)
T ss_dssp             GCE-EEEEEEEETTEE---EEEEEEECCSCCCC
T ss_pred             cCE-EEEEEEECCCCe---EeeEEEEEEccCCC
Confidence            995 999999999864   45566776665543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.47  E-value=1.6e-13  Score=96.80  Aligned_cols=91  Identities=18%  Similarity=0.314  Sum_probs=69.9

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--c---CCcEEEeec-CCCCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--T---AGALHIRDT-GMEDS   79 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~---~G~L~I~~v-~~~D~   79 (114)
                      ..+.|...|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+      .++++...  .   +..|.|.++ +.+|+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~v~W~k~~~~~------~~~~~~~~~~~~~~~~~L~i~~v~~~~d~   76 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRP--KIVWNKKGKKV------SNQRFEVIEFDDGSGSVLRIQPLRTPRDE   76 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEEC------CCTTEEEEEEGGGTEEEEEECSCCTTTTC
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCC--EEEEEECCcCC------CCCceeEEEEcCCCceEEEEeccCCCCCC
Confidence            34679999999999999999999999765443  89999999864      23344332  1   235999999 49999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      | .|+|.|.|..+.   .+..+.|.|..+
T Consensus        77 G-~Y~C~a~n~~g~---~~~~~~l~V~~~  101 (212)
T 2yd6_A           77 A-IYECVASNNVGE---ISVSTRLTVLRE  101 (212)
T ss_dssp             E-EEEEEEEETTEE---EEEEEEEEEECG
T ss_pred             e-EEEEEEEcCCCc---EEEEEEEEEecc
Confidence            5 999999998643   455778888764

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.47  E-value=9.4e-14  Score=104.99  Aligned_cols=87  Identities=22%  Similarity=0.311  Sum_probs=72.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|...+.+..+.+|.++.|.|.+.+++.+  .++|+||+..+     ..+.|+.+. ++.|.|.+++.+|+| .|+|.|
T Consensus       295 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~-----~~~~~~~~~-~~~L~i~~v~~~d~G-~Y~C~a  365 (382)
T 1cs6_A          295 PDWLDVITDTEADIGSDLRWSCVASGKPRP--AVRWLRDGQPL-----ASQNRIEVS-GGELRFSKLVLEDSG-MYQCVA  365 (382)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCC--EEEEEETTEEC-----CCCSSEEEE-TTEEEESSCCGGGCE-EEEEEE
T ss_pred             CCcccCCCccEEcCCCeEEEEEEeeeecCC--EEEEEECCEEC-----CCCceEEEE-CCEEEECcCCcccCE-EEEEEE
Confidence            457778888999999999999999776544  89999999854     456788775 789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.++.   .+..+.|.|.
T Consensus       366 ~N~~G~---~~~~~~l~V~  381 (382)
T 1cs6_A          366 ENKHGT---VYASAELTVQ  381 (382)
T ss_dssp             EETTEE---EEEEEEEEEE
T ss_pred             EeCCCe---EEEEEEEEEe
Confidence            999864   4557788875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.47  E-value=1.9e-13  Score=99.35  Aligned_cols=95  Identities=16%  Similarity=0.262  Sum_probs=72.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEc----cCCcEEEeecCCCCCCee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSIT----TAGALHIRDTGMEDSYIR   82 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~   82 (114)
                      ..+.+.|++..|.+|+++.|.|.+.+.+++ ..+.|+| |+..+    .....|+.+.    .++.|.|.+++.+|+| .
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~-~~i~W~~~~g~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~   76 (291)
T 1qz1_A            3 LQVDIVPSQGEISVGESKFFLCQVAGDAKD-KDISWFSPNGEKL----SPNQQRISVVWNDDDSSTLTIYNANIDDAG-I   76 (291)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEESSCCSC-CEEEEECTTSCBC----CSSCSSEEEEEEETTEEEEEECSCCGGGCE-E
T ss_pred             cceEecCCCceEeCCCeEEEEEEeCCCCCC-cEeEEECCCCeEC----ccCCceEEEEEcCCCeEEEEEecCCCCCCE-E
Confidence            458899999999999999999999765321 2899999 66643    2345677775    3468999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+|.|.|..++.  .+....|.|..+..
T Consensus        77 Y~C~~~n~~g~~--~~~~~~l~v~~~~~  102 (291)
T 1qz1_A           77 YKCVVTAEDGTQ--SEATVNVKIFQKLM  102 (291)
T ss_dssp             EEEEEECTTSCE--EEEEEEEEEECCSE
T ss_pred             EEEEEEcCCCCe--eEEEEEEEeecccc
Confidence            999999987542  44566777765543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.46  E-value=2.9e-13  Score=96.10  Aligned_cols=93  Identities=14%  Similarity=0.127  Sum_probs=67.5

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCeeeeeee-----eccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVSEARSI-----IHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~~~~~~-----~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      ++...+.+|+++.|.|...+...+...|.|.|  ++..|....     ...++|+.++++|+|.|++++.+|+| .|+|.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG-~Y~c~   84 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD-IYKVS   84 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCE-EEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCE-EEEEE
Confidence            45678999999999995422112212899999  887652110     13578999999999999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.|..+.. ..+....|.|.++
T Consensus        85 ~~n~~g~~-~~~~~~~L~V~~~  105 (182)
T 1hnf_A           85 IYDTKGKN-VLEKIFDLKIQER  105 (182)
T ss_dssp             EEETTSCE-EEEEEEEEEEECC
T ss_pred             EEeCCCce-eEEEEEEEEEcCc
Confidence            99986432 2233567888764

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.46  E-value=1.8e-13  Score=94.84  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=64.3

Q ss_pred             ceeec-cceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeee-----------eccCCcEEEc----------c
Q psy9140           9 DYEIN-TGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSI-----------IHSGGRYSIT----------T   65 (114)
Q Consensus         9 ~~~v~-~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~-----------~~~~~r~~v~----------~   65 (114)
                      .++|+ |.+..+..|++|.|.|.+.+.+.+.. .|.|+|++..++...           ....+|+...          .
T Consensus         2 dv~V~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (225)
T 4fmk_A            2 DVRVRVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLR   81 (225)
T ss_dssp             CCSEECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCC
T ss_pred             cEEEEeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccC
Confidence            34443 45678999999999999866555544 689999887543110           1112344332          3


Q ss_pred             CCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          66 AGALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        66 ~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +++|.|.+|+.+|+| .|+|.|.|..+..  .+....+.+..+
T Consensus        82 ~~sL~I~~v~~~D~G-~Y~C~~~~~~~~~--~~~~~~~~~~~~  121 (225)
T 4fmk_A           82 DATLAFRGLRVEDEG-NYTCEFATFPNGT--RRGVTWLRVIAQ  121 (225)
T ss_dssp             BCCEEECSCCGGGCE-EEEEEEEEETTEE--EEEEEEEEEEBC
T ss_pred             cEEEEEccCCHHHCc-ceEEEEEeCCCcc--eeeeeeeeeecC
Confidence            578999999999995 9999999975542  233444555443

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.46  E-value=5.1e-14  Score=99.95  Aligned_cols=98  Identities=15%  Similarity=0.137  Sum_probs=66.1

Q ss_pred             ceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeee---ccC-Cc----EEEccCCcEEEeecCCCCC
Q psy9140           9 DYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSII---HSG-GR----YSITTAGALHIRDTGMEDS   79 (114)
Q Consensus         9 ~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~---~~~-~r----~~v~~~G~L~I~~v~~~D~   79 (114)
                      .+.+.|... .+.+|.++.|.|.+.+.+.++..+.|+|++..+.....   ..+ .+    +..  .+.|.|.+|+.+|+
T Consensus       106 ~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~  183 (213)
T 2x1w_L          106 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF--LSTLTIDGVTRSDQ  183 (213)
T ss_dssp             EEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEE--EEEEEESSCCGGGC
T ss_pred             ceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceee--eEEEEECCCCcccC
Confidence            355666665 89999999999999654333227999999886321111   000 00    111  35799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      | .|+|.|.|..+.   .+..+.|.|.+++.|.
T Consensus       184 G-~Y~C~a~N~~g~---~~~~~~l~V~~~p~i~  212 (213)
T 2x1w_L          184 G-LYTCAASSGLMT---KKNSTFVRVHEDPIEG  212 (213)
T ss_dssp             E-EEEEEEECSSCE---EEEEEEEEEEC-----
T ss_pred             E-EEEEEEecCCCc---EEEEEEEEEecccccC
Confidence            5 999999998754   4678999999887664

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.46  E-value=5.2e-14  Score=97.26  Aligned_cols=86  Identities=14%  Similarity=0.229  Sum_probs=68.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEee-cCCCCCCeeeEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRD-TGMEDSYIRYYCQ   86 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~-v~~~D~gg~Y~C~   86 (114)
                      ...+.+..+.+|.++.|.|.+.+++.+  .++|+|++..+     ..+.||.+..   ++.|.|.+ ++.+|+| .|+|.
T Consensus       108 ~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~  179 (197)
T 2j8h_A          108 LEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLI-----DNNGHYQVIVTRSFTSLVFPNGVERKDAG-FYVVC  179 (197)
T ss_dssp             BTTBEEEEEETTCCCEEEEEEEEESCC--EEEEEESSCEE-----CSSSSCEEEECSSEEEEECTTCCCGGGCE-EEEEE
T ss_pred             ccccCeEEEeCCCEEEEEEEEEecCCC--cEEEEECCEEe-----ecCCCEEEEEcCCceEEEEeCCCCcccCE-eEEEE
Confidence            334567789999999999999765544  89999999853     4667887753   46899999 9999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEec
Q psy9140          87 TTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|.++.   .+..+.|.|.|
T Consensus       180 a~N~~g~---~~~~~~l~V~d  197 (197)
T 2j8h_A          180 AKNRFGI---DQKTVELDVAD  197 (197)
T ss_dssp             EEETTEE---EEEEEEEEEEC
T ss_pred             EEeCCCc---EeEEEEEEEeC
Confidence            9998764   45677888864

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.46  E-value=6e-13  Score=91.58  Aligned_cols=90  Identities=13%  Similarity=0.197  Sum_probs=68.6

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      |..++..+.+....+.+|.++.|.|.+.+...+ ..+.|+|++..+.         . ...++.|.|.+++.+|+| .|+
T Consensus        86 V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~k~g~~~~---------~-~~~~~~L~i~~v~~~d~G-~Y~  153 (175)
T 1fnl_A           86 VHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRK---------Y-FHHNSDFHIPKATLKDSG-SYF  153 (175)
T ss_dssp             EECSSEEEECSCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEE---------E-EEECCCEEESSCCGGGCE-EEE
T ss_pred             EeCCCceeeCCCceecCCCCEEEEEEcCCCCCc-eEEEEEECCeEcc---------C-CCCCCEEEEcccChhhCe-EEE
Confidence            334455666667789999999999999764332 2899999998641         1 123689999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.|.|..+.  ..|....|.|.+|
T Consensus       154 C~a~n~~~~--~~s~~~~l~V~~~  175 (175)
T 1fnl_A          154 CRGLVGSKN--VSSETVNITITQA  175 (175)
T ss_dssp             EEEEETTEE--EECCCEEEEEECC
T ss_pred             EEEEcCCCC--ccCccEEEEEeCC
Confidence            999997433  4677999999875

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.46  E-value=1.9e-13  Score=95.17  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-CcEEEeecCCCCCCeeeEEEEeeccCCcEEe
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-GALHIRDTGMEDSYIRYYCQTTHKLTGERKI   97 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~   97 (114)
                      +.+|.++.|.|.+.+.+ +  .++|+|++..+     ..+.|+.+..+ +.|.|.+++.+|+| .|+|.|.|.++.  ..
T Consensus       122 ~~~g~~v~l~C~~~~~p-p--~i~W~~~g~~l-----~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g~--~~  190 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-A--NIQWLFNSQSL-----QLTERMTLSQNNSILRIDPIKREDAG-EYQCEISNPVSV--RR  190 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-C--EEEEEETTEEC-----CCCSSEEEETTTTEEEESSCCGGGCE-EEEEEEECTTCC--EE
T ss_pred             EeeCCCEEEEEECCCCC-C--ceEEEECCEeC-----CCCCCeEEcCCCCEEEEeccCHHhCe-EEEEEEecCCCc--cc
Confidence            88999999999997632 2  89999999853     45678888754 78999999999995 999999999876  36


Q ss_pred             CCCeEEEEeccccc
Q psy9140          98 SPPSQVMVSEIALP  111 (114)
Q Consensus        98 s~~a~L~V~~~~~~  111 (114)
                      |.+.+|.|..|...
T Consensus       191 s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          191 SNSIKLDIIFDPHH  204 (208)
T ss_dssp             CCCEEECCC-----
T ss_pred             CCceeeeEEeCCcc
Confidence            88999999887654

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.45  E-value=2e-13  Score=88.07  Aligned_cols=93  Identities=17%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCc--ceEEEeeCCe-------eeee-e--------eeccCCcEEEccC------C
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNL--LLIAWLREGV-------SEAR-S--------IIHSGGRYSITTA------G   67 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~--~~vsW~kd~~-------~~~~-~--------~~~~~~r~~v~~~------G   67 (114)
                      ..|....+.+|++|.|.|.+.+...+.  ..+.|+|++.       .++. .        .....+|+.+..+      +
T Consensus        10 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   89 (126)
T 1eaj_A           10 TPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDA   89 (126)
T ss_dssp             SSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBC
T ss_pred             CCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeE
Confidence            456677899999999999985433221  2699999752       2211 0        0122578888765      7


Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.|++|+.+|+| .|.|.+.|..+   ..+...+|.|.+|
T Consensus        90 sL~I~~v~~~D~G-~Y~C~v~~~~~---~~~~~~~L~V~~p  126 (126)
T 1eaj_A           90 SINVTNLQLSDIG-TYQCKVKKAPG---VANKKIHLVVLVK  126 (126)
T ss_dssp             CEEECSCCGGGCE-EEEEEEEETTE---EEEEEEEEEEEC-
T ss_pred             EEEECcCChHHCe-EEEEEEEcCCc---cCCcEEEEEEEcC
Confidence            8999999999995 99999999643   3455778888765

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.45  E-value=2.9e-14  Score=98.88  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=66.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      .+...+.+..+.+|.++.|.|.+ .+++.+  .++|+|++...    .....++....+|.|.|.+++.+|+| .|+|.|
T Consensus       123 ~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~--~v~W~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a  195 (214)
T 3jz7_A          123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPL--QFEWQKLSDSQ----TMPTPWLAEMTSPVISVKNASSEYSG-TYSCTV  195 (214)
T ss_dssp             BSCEEEEESCCBTTCCEEEEEECSBCCSSC--EEEEEECSTTC----CCCGGGGGGTTSSEEEECSCCGGGCE-EEEEEE
T ss_pred             CCceeeeecceecCCcEEEEecCCCCCCCC--EEEEEECCCCC----ccCccceeccCCCEEEEecCCHHHCE-EEEEEE
Confidence            34444555568899999999999 565443  89999965432    12233444456789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|.++.   .+..+.|.|.+|+
T Consensus       196 ~N~~g~---~~~~~~l~V~~P~  214 (214)
T 3jz7_A          196 QNRVGS---DQCMLRLDVVPPS  214 (214)
T ss_dssp             ECSSCE---EEEEEEECCBCCC
T ss_pred             EcCCCc---EEEEEEEEEeCCC
Confidence            999864   4667888888763

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.45  E-value=4.6e-13  Score=94.32  Aligned_cols=91  Identities=21%  Similarity=0.238  Sum_probs=67.4

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeee---------cc----CCcEEEccCCcEEEeecCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSII---------HS----GGRYSITTAGALHIRDTGME   77 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~---------~~----~~r~~v~~~G~L~I~~v~~~   77 (114)
                      -.|+...+.+|.+|.|+|.+.+.  ++. .+.|+|++..+.....         ..    .+|+.+..+|+|.|++|+.+
T Consensus         3 ~~p~~v~~~~G~~v~L~C~~~~~--~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~   80 (193)
T 2if7_A            3 LTPLMVNGILGESVTLPLEFPAG--EKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKME   80 (193)
T ss_dssp             CCCEEEEEETTSCEEECCCCCCC--SCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGG
T ss_pred             CCCeEEEEEecCeEEEeccCCCc--ccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcc
Confidence            35788899999999999998542  223 8999999765421000         01    25888888999999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |+| .|+|.+.|..+.   ......|.|.++
T Consensus        81 D~G-~Y~C~~~~~~~~---~~~~~~L~V~~~  107 (193)
T 2if7_A           81 DTG-SYRAQISTKTSA---KLSSYTLRILRQ  107 (193)
T ss_dssp             GCE-EEEEEEECSSCE---EEEEEEEEEECC
T ss_pred             cCc-eEEEEEEecCCC---eEEEEEEEEEcc
Confidence            995 999999997543   223677888754

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.45  E-value=5.2e-13  Score=89.60  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             ceee--ccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCee--e-eeee---------eccCCcEEEccC------C
Q psy9140           9 DYEI--NTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVS--E-ARSI---------IHSGGRYSITTA------G   67 (114)
Q Consensus         9 ~~~v--~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~--~-~~~~---------~~~~~r~~v~~~------G   67 (114)
                      .|.+  .++...+.+|++|.|.|.+.+...... .+.|+|++..  + ++..         ..-.+|+.+..+      +
T Consensus         6 ~~~V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   85 (139)
T 1pko_A            6 QFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKV   85 (139)
T ss_dssp             CCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEE
T ss_pred             EEEEECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeE
Confidence            4544  344678999999999999844322112 8999998742  1 1100         011478887643      4


Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      +|.|++|+.+|+| .|+|.+.|..+   ..+..++|.|.+|...+
T Consensus        86 sL~I~~v~~~D~G-~Y~C~v~~~~~---~~~~~~~L~V~~P~~~~  126 (139)
T 1pko_A           86 ALRIQNVRFSDEG-GYTCFFRDHSY---QEEAAVELKVEDPFYWI  126 (139)
T ss_dssp             EEEESSCCGGGCE-EEEEEEEETTE---EEEEEEEEEEECTTTTS
T ss_pred             EEEEccCCHHHCE-EEEEEEEcCCC---ceEEEEEEEEecCcCcc
Confidence            7999999999995 99999999753   34567899999776554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.45  E-value=3.1e-13  Score=98.27  Aligned_cols=97  Identities=16%  Similarity=0.204  Sum_probs=74.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|...+.+..+.+|.++.|.|.+.+++.+  .+.|+|++..+   ....+.||.+..++.|.|.+++.+|+| .|+|.|
T Consensus        99 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~  172 (291)
T 2wim_A           99 LTFREVVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEV---TTISDNRFAMLANNNLQILNINKSDEG-IYRCEG  172 (291)
T ss_dssp             CBCCSCCCSEEEETTSCEEECCCCBCSSCC--EEEEECC-------CBCCCSSEEECTTSCEEETTCCGGGCE-EEEEEE
T ss_pred             cceEeCCCChhhcCCCCEEEEEEEccCCCC--EEEEEECCccc---cccCCceEEEccCCCEEEEecchhhCE-EEEEEE
Confidence            346677888899999999999999775444  89999999864   233578999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|..++. ..+....|.|..++.+
T Consensus       173 ~n~~~~~-~~~~~~~~~v~~~p~~  195 (291)
T 2wim_A          173 RVEARGE-IDFRDIIVIVNVPPAI  195 (291)
T ss_dssp             EETTTTE-EEEEEEEEEEEBCCCC
T ss_pred             EECCCCe-eEEeeEEEEeccCCcc
Confidence            9987553 2333567777776654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.44  E-value=3.2e-13  Score=92.88  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             ccee-eccceeEEEeCCeEEEEee-cCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           8 SDYE-INTGNTFVLRGNIAVLQCN-IPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         8 ~~~~-v~~~d~~v~~G~~AvL~C~-~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ++|. ..+++..+.+|+++.|.|. +.+.+.+ ..+.|+|++..+..  .....++....++.|.|.+++.+|+| .|+|
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~-~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C   83 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDD-LSYRWLLNEFPVFI--TMDKRRFVSQTNGNLYIANVEASDKG-NYSC   83 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSC-CEEEEEESSTTCBC--CCSSSEEECTTTCCEEESSCCGGGCE-EEEE
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCc-eEEEEEECCceeee--eeCCCeEEEcCCCeEEECcCCcccCe-EEEE
Confidence            3444 4558889999999999999 6555441 28999999986521  12334555567899999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEE
Q psy9140          86 QTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .+.|..+.....+....|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~  103 (201)
T 3s97_C           84 FVSSPSITKSVFSKFIPLIP  103 (201)
T ss_dssp             EEEEGGGTEEEECCCEEEEE
T ss_pred             EEEecCCCcchhhcccceee
Confidence            99998766544445555544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.44  E-value=1.1e-12  Score=90.96  Aligned_cols=96  Identities=21%  Similarity=0.307  Sum_probs=71.2

Q ss_pred             ceeeccceeEEEeCCeEEEEee-cCCCCCCcceEEEeeCCe-eeeeee----eccCCcEEEc-cCCcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCN-IPAYNHNLLLIAWLREGV-SEARSI----IHSGGRYSIT-TAGALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~-~~~~~~~~~~vsW~kd~~-~~~~~~----~~~~~r~~v~-~~G~L~I~~v~~~D~gg   81 (114)
                      .+...+.+..+.+|.++.|.|. +.+++.+  .++|+|++. .+....    .....+|.+. .++.|.|.+++.+|+| 
T Consensus       106 ~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-  182 (212)
T 1f97_A          106 SKPTISVPSSVTIGNRAVLTCSEHDGSPPS--EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG-  182 (212)
T ss_dssp             CCCEEECCSEEETTSCEEEEEECSCCBSCC--EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCE-
T ss_pred             CCcccCCccccCCCCeEEEEEEcccCcCCC--EEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCc-
Confidence            3445556678999999999999 5665444  899999998 652110    0112567764 4789999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|+|.|.|..+.. ..|...+|.|++.
T Consensus       183 ~Y~C~a~n~~g~~-~~s~~~~l~V~~~  208 (212)
T 1f97_A          183 EYYCQAQNGYGTA-MRSEAAHMDAVEL  208 (212)
T ss_dssp             EEEEEEECSSSCC-EECCCEEEEEESS
T ss_pred             EEEEEEccccCCc-cccceEEEEEEEe
Confidence            9999999998642 4577889999874

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.44  E-value=1.6e-13  Score=103.74  Aligned_cols=94  Identities=19%  Similarity=0.286  Sum_probs=74.9

Q ss_pred             ccceeeccceeEE---EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCC-CCCCee
Q psy9140           7 SSDYEINTGNTFV---LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM-EDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v---~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~-~D~gg~   82 (114)
                      .|.|..+|++..+   .+|+++.|.|.+.+.+.+  .+.|+||+..+   ....+.||.+. +|.|.|.++.. +|+| .
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~k~g~~~---~~~~~~~~~~~-~~~L~i~~~~~~~D~G-~   76 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA--TYRWKMNGTEL---KMGPDSRYRLV-AGDLVISNPVKAKDAG-S   76 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCC--EEEEEETTEEC---CCSTTSSEEEE-TTEEEEESCCHHHHCE-E
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCC--EEEEEECCEEC---CcCCCccEEee-CCeEEEecccccccCE-E
Confidence            4679999999887   799999999999765433  89999999865   22346788775 79999999997 9995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |+|.|.|..+.  ..+..+.|.|..+.
T Consensus        77 Y~C~a~n~~g~--~~s~~~~l~v~~~~  101 (382)
T 1cs6_A           77 YQCVATNARGT--VVSREASLRFGFLQ  101 (382)
T ss_dssp             EEEEEEETTEE--EECCCEEEEEEEEC
T ss_pred             EEEEEEcCCcE--EEecceEEEeeccc
Confidence            99999997643  35667888887544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.44  E-value=1.2e-12  Score=91.76  Aligned_cols=93  Identities=18%  Similarity=0.262  Sum_probs=66.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee-------eccCCcEEEcc---CCcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI-------IHSGGRYSITT---AGALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~-------~~~~~r~~v~~---~G~L~I~~v~~~   77 (114)
                      +...| +..+.+|++|.|.|.+.+.+.+  .+.|+|.  +.......       ....+||.+..   ++.|.|.+|+.+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDV--YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTS--CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCc--eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            34455 8899999999999999754333  8999993  22211000       01356888543   457999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|+|.|.|..++....+..+.|.|.
T Consensus        81 D~G-~Y~C~~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           81 DEA-DYYCQSWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             GCE-EEEEEEEETTTTEEEEBCCEEEEEE
T ss_pred             hCE-EEEEEeccCCcceeEEcCceEEEEe
Confidence            995 9999999987643456778899998

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.44  E-value=1.4e-13  Score=94.70  Aligned_cols=91  Identities=19%  Similarity=0.333  Sum_probs=68.6

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCC--cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAG--ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G--~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...|++..+.+|.++.|.|.+.+.+.+  .+.|+|++..+.   .....++.+. .+|  .|.|.+++.+|+| .|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y   78 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVP--EVSWFRDGQVIS---TSTLPGVQISFSDGRAKLTIPAVTKANSG-RY   78 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEESSSBCC---TTTSTTCEEEEETTEEEEEESSCCGGGCE-EE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCC--EEEEEECCEEcc---cccCCceEEEeCCCEEEEEECCCCcccCE-EE
Confidence            4668899999999999999999999665443  899999998641   1122344443 233  7999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEe
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|.|.|..+.   .+..+.|.|.
T Consensus        79 ~C~~~n~~~~---~~~~~~l~v~   98 (194)
T 2a38_A           79 SLKATNGSGQ---ATSTAELLVK   98 (194)
T ss_dssp             EEEEEETTEE---EEEEEEEEEE
T ss_pred             EEEEEcCCce---EeEEEEEEEc
Confidence            9999997643   3445677776

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.44  E-value=1.7e-13  Score=103.64  Aligned_cols=85  Identities=22%  Similarity=0.352  Sum_probs=69.1

Q ss_pred             cceeeccce-eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGN-TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d-~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +.|...|.+ ..+.+|.++.|.|.+.+++.+  .++|+||+..+      .++||.+. ++.|.|.+++.+|+| .|+|.
T Consensus       309 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~------~~~~~~~~-~~~L~i~~~~~~d~G-~Y~C~  378 (395)
T 1bih_A          309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP--NVVWSHNAKPL------SGGRATVT-DSGLVIKGVKNGDKG-YYGCR  378 (395)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCC--CCEEEETTEEC------CSSSEEEE-TTEEEESSCCSTTCE-EEEEE
T ss_pred             CccccCCCcceEecCCCeEEEEEEECcccCC--eeEEEECCEEC------CCCceEEE-CCEEEEeeCCcccCE-EEEEE
Confidence            457777877 789999999999999776554  79999999853      34588876 679999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEE
Q psy9140          87 TTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V  105 (114)
                      |.|.++.   .+..+.|.|
T Consensus       379 a~N~~G~---~~~~~~l~V  394 (395)
T 1bih_A          379 ATNEHGD---KYFETLVQV  394 (395)
T ss_dssp             EEETTEE---EEEEEEEEE
T ss_pred             EEccCCC---ceEEEEEEE
Confidence            9999864   455667766

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.43  E-value=4e-14  Score=103.56  Aligned_cols=98  Identities=14%  Similarity=0.273  Sum_probs=68.8

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeee---eeee--eccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSE---ARSI--IHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~---~~~~--~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      .+.+...|.+..+.+|.++.|.|.+.+++.+. .++|+|++..+   +...  ....+++....++.|.|.+++.+|+| 
T Consensus       188 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G-  265 (290)
T 2o26_X          188 IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSV-NSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSG-  265 (290)
T ss_dssp             CCEEECSCSBCCCCTTCCEEEEEEEEESSTTC-EEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCE-
T ss_pred             CCccccCCCcceEecCCcEEEEEEEecCCcce-eEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCe-
Confidence            34577788888999999999999997654431 49999998862   1000  00112333445689999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|+|.|.|.++.   .+..+.|.|.+++
T Consensus       266 ~Y~C~a~N~~g~---~~~~~~l~V~~~P  290 (290)
T 2o26_X          266 VFMCYANNTFGS---ANVTTTLKVVEKG  290 (290)
T ss_dssp             EEEEEEECSSCE---EEEEEEECC----
T ss_pred             EEEEEEeCCCCc---EEEEEEEEEEeCC
Confidence            999999999864   4667888887653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.43  E-value=5.8e-13  Score=98.17  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=73.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|.++.|.|.+.+.+.+  .++|+|++..+.  ......|+....+|.|.|.+++.+|+| .|+|.|
T Consensus       109 p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~k~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a  183 (304)
T 2yd9_A          109 PNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVD--PSASNGRIKQLRSGALQIESSEETDQG-KYECVA  183 (304)
T ss_dssp             CEEEECCCCEEEETTSCEEECCEEECSSCC--EEEEEETTEECC--GGGGTTSEEECTTSCEEECSCCGGGCE-EEEEEE
T ss_pred             CeeecCCccEEEeCCCeEEEEEECccCCCC--eEEEEECCEECc--CCCCcceEEeCCCeEEEEccCCcccCE-EEEEEE
Confidence            457788888899999999999999776444  899999998652  122345888888999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|..+.  ..+..+.|.|.
T Consensus       184 ~n~~g~--~~~~~~~l~v~  200 (304)
T 2yd9_A          184 TNSAGV--RYSSPANLYVR  200 (304)
T ss_dssp             EETTEE--EECCCEEEEEE
T ss_pred             EeCCCC--EEeccEEEEEE
Confidence            998653  24445788775

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.43  E-value=5.4e-13  Score=92.67  Aligned_cols=98  Identities=16%  Similarity=0.255  Sum_probs=71.4

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEe-----ecCCCCCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR-----DTGMEDSY   80 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~-----~v~~~D~g   80 (114)
                      ..+.|...|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+.........+.....+|.|.+.     +++.+|+|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCC--EEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCC--EEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            45678899999999999999999999665433  899999998652111111234556667876654     56999995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                       .|+|.|.|..+.  ..+..+.|.|..+
T Consensus        86 -~Y~C~~~n~~g~--~~~~~~~l~V~~~  110 (212)
T 2v9r_A           86 -VYVCVARNYLGE--AVSHDASLEVAIL  110 (212)
T ss_dssp             -EEEEEEEETTEE--EECCCEEEEECEE
T ss_pred             -EEEEEEECCCCc--eeecceEEEEEec
Confidence             999999997643  2466788888753

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.43  E-value=1.5e-12  Score=92.89  Aligned_cols=95  Identities=19%  Similarity=0.277  Sum_probs=70.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeee----eeccCCcEEEcc-----CCcEEEeec
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARS----IIHSGGRYSITT-----AGALHIRDT   74 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~----~~~~~~r~~v~~-----~G~L~I~~v   74 (114)
                      .+...|.+..+.+|++|.|.|.+.+.+.+  .+.|+|++.     .++..    ....++||.+..     ++.|.|.++
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~--~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  206 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADS  206 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCCTTCC--EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTC
T ss_pred             eEEccCceEEEeCCCeEEEEEEEecCCCC--cEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCC
Confidence            45666888899999999999999776444  899999742     11110    012367898852     358999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +.+|+| .|+|.|.|...+.......++|.|.
T Consensus       207 ~~~D~G-~Y~C~a~n~~~~~~~~g~gt~l~V~  237 (238)
T 2p1y_A          207 QPGDSA-TYFCAAIDTNAYKVIFGKGTHLHVL  237 (238)
T ss_dssp             CGGGCE-EEEEEEEETTTTEEEECCCEEEEEE
T ss_pred             CHHHCE-EEEEEEeeCCCCeEEECCCEEEEEe
Confidence            999995 9999999975455556778888885

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=97.18  Aligned_cols=99  Identities=18%  Similarity=0.225  Sum_probs=71.9

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeeeeeeee----ccCCcEEEc--------cCCcEEEeecC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSEARSII----HSGGRYSIT--------TAGALHIRDTG   75 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~~~~----~~~~r~~v~--------~~G~L~I~~v~   75 (114)
                      .|...|++..+.+|+++.|.|.+.+. +.+  .+.|+|++..+.....    ....|+.+.        .++.|.|.+++
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~--~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVG--PIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCC--CEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCc--eEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            46677899999999999999999765 333  7999999864210011    123488763        35689999999


Q ss_pred             CCCCCeeeEEEEeeccCCc--EEeCCCeEEEEecccc
Q psy9140          76 MEDSYIRYYCQTTHKLTGE--RKISPPSQVMVSEIAL  110 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~~~~~  110 (114)
                      .+|+| .|+|.|.|..+..  ...+..+.|.|..++.
T Consensus        83 ~~D~G-~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~  118 (327)
T 2wng_A           83 PADAG-TYYCVKFRKGSPDTEFKSGAGTELSVRAKPS  118 (327)
T ss_dssp             GGGCE-EEEEEEEESSTTCEEEEECCCEEEEEEBCCC
T ss_pred             cccCe-EEEEEeecCCCcceeEeecCcEEEEEEecCC
Confidence            99995 9999999975432  2345678999986543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.42  E-value=2.7e-13  Score=102.52  Aligned_cols=91  Identities=15%  Similarity=0.239  Sum_probs=70.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|...|.+..+.+|.++.|.|.+.+++.+  .++|+|++..+..  .....++.. .++.|.|.+++.+|+| .|+|.|
T Consensus       313 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~~~--~~~~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~a  386 (404)
T 3p3y_A          313 PYWLDEPKNLILAPGEDGRLVCRANGNPKP--TVQWMVNGEPLQS--APPNPNREV-AGDTIIFRDTQISSRA-VYQCNT  386 (404)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCC--EEEEEETTEEGGG--SCCCTTEEE-ETTEEEESSCCSSCCC-EEEEEE
T ss_pred             CeeeccCCcceeecCCcEEEEEEccccCCC--ceEEEECCEecCC--CCCCceEEe-cCCEEEEeecCHHHCE-EEEEEE
Confidence            457778888999999999999999776544  8999999986521  111234444 4789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|.++.   .+..+.|.|.+
T Consensus       387 ~N~~G~---~~~~~~l~V~d  403 (404)
T 3p3y_A          387 SNEHGY---LLANAFVSVLD  403 (404)
T ss_dssp             EETTEE---EEEEEEEEEC-
T ss_pred             EeCCCc---EEEEEEEEEEe
Confidence            999864   45577887764

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.42  E-value=7.6e-13  Score=92.55  Aligned_cols=83  Identities=14%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc----CCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----AGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      +..+.+|.++.|.|.+.+. .+  .++|+|++..+.    ..+.++.+..    ++.|.|.+|+.+|+| .|+|.|.|..
T Consensus       109 ~~~v~~G~~v~L~C~~~~~-~~--~v~W~k~g~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~  180 (198)
T 1ugn_A          109 SPVVNSGGNVTLQCDSQVA-FD--GFILCKEGEDEH----PQCLNSQPHARGSSRAIFSVGPVSPSRRW-WYRCYAYDSN  180 (198)
T ss_dssp             CSEEETTCCEEEEEECSSC-CS--EEEEEEC----------CEEEC------CCEEEEEECCCCTTSCE-EEEEEEECTT
T ss_pred             ccccCCCCcEEEEEecCCC-Cc--EEEEEECCCccC----CccccccccCCCcceeEEEecccCcccCe-EEEEEEEeCC
Confidence            4789999999999999775 33  899999998642    1223333333    378999999999995 9999999986


Q ss_pred             CCcE--EeCCCeEEEEe
Q psy9140          92 TGER--KISPPSQVMVS  106 (114)
Q Consensus        92 ~~~~--~~s~~a~L~V~  106 (114)
                      ....  ..|....|.|+
T Consensus       181 ~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          181 SPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             STTEECCCCCCEEEEEE
T ss_pred             CCccccCcCceEEEEec
Confidence            5321  23668888875

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.42  E-value=1.4e-12  Score=84.55  Aligned_cols=92  Identities=13%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee----eccCCcEEEccC---CcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI----IHSGGRYSITTA---GALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~----~~~~~r~~v~~~---G~L~I~~v~~~   77 (114)
                      ....|.+..+.+|.+|.|.|.+.+...+  .+.|+|...     .++...    ....+||.+..+   ..|.|++++.+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDS--FVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAE   81 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCS--CEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTT
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCc--EEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            4556888899999999999998654322  789998641     121110    012579988643   37999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|.|.+.|.  ....-...++|.|+
T Consensus        82 DsG-~Y~C~~~~~--~~~~fg~gT~l~V~  107 (108)
T 1qfw_M           82 DFA-DYHCGQTYN--HPYTFGGGTKLEIK  107 (108)
T ss_dssp             CCS-EEEEEECSS--SSCEECCCEEEECC
T ss_pred             hCE-EEEEEEccC--CceEECCCEEEEEc
Confidence            996 999999985  23345668888874

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.42  E-value=3.1e-13  Score=94.42  Aligned_cols=89  Identities=12%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--ccCCcEEEeecCCCCCCeeeEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--TTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      +.+...|.. .|.+|++++|.|.+.+ ..+  .+.|.|++..+.     .+.+...  ..++.|.|.+++.+|+| .|+|
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~--~~~w~k~g~~~~-----~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   75 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTL-EAR--EYRLDKEESPAP-----WDRQNPLEPKNKARFSIPSMTEDYAG-RYRC   75 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-TCC--EEEEEETTSCSC-----SEEECCCSSSSEEEEEESSCCGGGCE-EEEE
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCC-CCC--EEEEEECCCCCc-----ccccccccCCceEEEEeccCCcccCc-eEEE
Confidence            457788877 8999999999999976 222  789999998541     1111111  34578999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEec
Q psy9140          86 QTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|.|..+ ....|....|.|..
T Consensus        76 ~a~n~~g-~~~~s~~~~l~V~~   96 (196)
T 3p2t_A           76 YYRSPVG-WSQPSDPLELVMTG   96 (196)
T ss_dssp             EEEETTE-EBCCCCCEEEEEEC
T ss_pred             EEeCCCc-ccCCCccEEEEecC
Confidence            9999864 12356688888864

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.42  E-value=2.2e-13  Score=100.97  Aligned_cols=89  Identities=18%  Similarity=0.178  Sum_probs=66.4

Q ss_pred             cceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |.+.+.+.+. .+.+|..+.|.|.+.++++|. .++|+|++..+     ..  . ....++.|.|.+++.+|+| .|+|.
T Consensus       217 P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~-~v~W~~~~~~l-----~~--~-~~~~~~~L~i~~v~~~d~G-~Y~C~  286 (313)
T 4fqp_A          217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPT-GYNWSTTMGPL-----PP--F-AVAQGAQLLIRPVDKPINT-TLICN  286 (313)
T ss_dssp             EEEEEECCCSCEETTCCCEEEEEEEEEESCCC-EEEEEETTBSC-----CT--T-EEEETTEEEECCCSSCCEE-EEEEE
T ss_pred             CccccccccceeecCCCeEEEEEEecCCCCCc-EEEEEECCEEC-----CC--c-eEEeCCEEEECcCChhhCE-EEEEE
Confidence            3455555444 466788999999997765442 68999999854     11  1 2334689999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEeccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |.|.++.   .+..+.|.|++++
T Consensus       287 a~N~~G~---~~~~~~l~V~~~P  306 (313)
T 4fqp_A          287 VTNALGA---RQAELTVQVKEGP  306 (313)
T ss_dssp             EECSSCE---EEEEEEEEEECCC
T ss_pred             EEeCCCc---EEEEEEEEEEeCC
Confidence            9999864   4667899998664

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.41  E-value=7.9e-13  Score=95.98  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=70.6

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeee-------eccCCcEEEccCC---cEEEeec
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSI-------IHSGGRYSITTAG---ALHIRDT   74 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v   74 (114)
                      .+.+...|.+..+.+|.++.|.|.+.+.+.+  .+.|+|++  ..+....       ....+||.+..++   .|.|.++
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  215 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRASQDIGS--NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSL  215 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSC
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEEecCCCc--EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCC
Confidence            4456777888999999999999999775443  79999952  2211000       0124788886544   4999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      +.+|+| .|+|.|.|.  .....+..++|.|++++.
T Consensus       216 ~~~D~G-~Y~C~~~~~--~~~~fg~gt~L~V~~~~~  248 (256)
T 3umt_A          216 ESEDFV-DYYCLQYAS--SPPTFGGGTKLEIKRAAA  248 (256)
T ss_dssp             CGGGCS-EEEEEECSS--SSCEECCCEEEEEC----
T ss_pred             ChhHCE-EEEEEEeeC--CCcEECCCEEEEEECCCc
Confidence            999996 999999995  344567799999998765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.41  E-value=2.2e-13  Score=94.20  Aligned_cols=89  Identities=18%  Similarity=0.266  Sum_probs=66.4

Q ss_pred             eccceeEEEe-CCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          12 INTGNTFVLR-GNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        12 v~~~d~~v~~-G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..+.+..+.+ |+++.|.|.+.+.+.+...+.|+|++..+     ..+.++ . .++.|.|.+++.+|+| .|+|.|.|.
T Consensus         7 ~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~-----~~~~~~-~-~~~~L~i~~~~~~d~G-~Y~C~~~n~   78 (190)
T 2wv3_A            7 VTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL-----TATRKN-A-SNMEYRINKPRAEDSG-EYHCVYHFV   78 (190)
T ss_dssp             EECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEEC-----TTCCBC-C-SEEEEEESSCCGGGCE-EEEEEEEET
T ss_pred             cccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEEC-----cccceE-e-ccEEEEEecCCcccCE-EEEEEEEeC
Confidence            3456667777 99999999997654422289999999854     233333 2 5789999999999995 999999997


Q ss_pred             cCCcEEeCCCeEEEEecccccc
Q psy9140          91 LTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                       +.   .+..+.|.|..++.+.
T Consensus        79 -~~---~~~~~~l~V~~~p~~~   96 (190)
T 2wv3_A           79 -SA---PKANATIEVKAAPDIT   96 (190)
T ss_dssp             -TE---EEEEEEEEEECCCEEE
T ss_pred             -Cc---ccccEEEEEecCCccc
Confidence             32   4567888888776553

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.41  E-value=8.7e-13  Score=85.70  Aligned_cols=92  Identities=14%  Similarity=0.192  Sum_probs=65.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee----eccCCcEEEcc---CCcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI----IHSGGRYSITT---AGALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~---~G~L~I~~v~~~   77 (114)
                      +...|++..+.+|.+|.|.|.+.+.+.+  .+.|+|++  .   .++...    ....+||.+..   +..|.|++++.+
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (109)
T 2q20_A            6 MTQSPSSLSASVGDRVTITCQASQDISN--YLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPE   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCEEEecCCCcEEEEEeeccCCCC--cEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChh
Confidence            4556888999999999999998654322  78999964  2   121100    01257998863   347999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|.|.+.|.  +...-...++|.|+
T Consensus        84 DsG-~Y~C~~~~~--~~~~fg~gT~L~V~  109 (109)
T 2q20_A           84 DIA-TYYCQQYDN--LPYTFGQGTKLEIK  109 (109)
T ss_dssp             GCE-EEEEEECSS--SSCCBCCCEEEEEC
T ss_pred             hCE-EEEEEEeeC--CcceECCCEEEEEC
Confidence            995 999999985  22234568888874

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=99.27  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=61.8

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC-CcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA-GALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~-G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +.+..+.+|.++.|.|.+.+.+.+. .++|+||+..+     ..+.||.+..+ +.|.|.+++.+|+| .|+|.|.|.++
T Consensus       228 ~~~~~v~~G~~~~l~C~~~~~p~~~-~v~W~~~g~~~-----~~~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~N~~G  300 (312)
T 2y23_A          228 YLSWEVTGECNVLLKCKVANIKKET-HIVWYKDEREI-----SVDEKHDFKDGICTLLITEFSKKDAG-IYEVILKDDRG  300 (312)
T ss_dssp             EEEEEEETTTEEEEEEEEESCCSSC-EEEEEETTEEE-----EEECCC----CEEEEEECSCSGGGCE-EEEEEEESTTC
T ss_pred             cceEEEeCCCEEEEEEEEcCCCCCC-EEEEeeCCEEC-----CCCCcEEEECCEEEEEECcCCHHHCE-EEEEEEEcCCC
Confidence            3357899999999999997754332 79999999864     34677777643 58999999999995 99999999987


Q ss_pred             CcEEeCCCeEEEEe
Q psy9140          93 GERKISPPSQVMVS  106 (114)
Q Consensus        93 ~~~~~s~~a~L~V~  106 (114)
                      .   .+..+.|.|+
T Consensus       301 ~---~~~~~~l~i~  311 (312)
T 2y23_A          301 K---DKSRLKLVDE  311 (312)
T ss_dssp             C---EEEEEEECSC
T ss_pred             c---eeeeeEEEec
Confidence            5   3445666553

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.41  E-value=2.9e-13  Score=93.68  Aligned_cols=98  Identities=11%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      .+...|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+...       .....+|+.+.. +.|.|.+++.+|+| 
T Consensus         6 ~i~~~~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G-   81 (209)
T 1nbq_A            6 TVHSSEPEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTG-   81 (209)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSE--EEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCS-
T ss_pred             EEEcCCCceEEEcCCCEEEEEEEeCCCCc--EEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCc-
Confidence            46678888899999999999999765332  89999988753210       123357887774 99999999999996 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|+|.|.|..+ ....+....|.|..++.+
T Consensus        82 ~Y~C~~~~~~g-~~~~~~~~~l~V~~~p~~  110 (209)
T 1nbq_A           82 TYTCMVSEEGG-NSYGEVKVKLIVLVPPSK  110 (209)
T ss_dssp             EEEEEEEETTS-SCEECCEEECCEEBCCCC
T ss_pred             EEEEEEecCCC-CccceEEEEEEEecCCcC
Confidence            99999999754 223455778888766654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.41  E-value=8.3e-13  Score=91.39  Aligned_cols=85  Identities=13%  Similarity=0.209  Sum_probs=66.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|..+.|.|.+.+++.+. .++|+|++..+     ....++  ..++.|.|.+++  |+ |.|+|.|
T Consensus       107 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~~~~-----~~~~~~--~~~~~L~i~~~~--d~-G~Y~C~a  175 (195)
T 2c5d_C          107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPV-DLLWLQDAVPL-----ATAPGH--GPQRSLHVPGLN--KT-SSFSCEA  175 (195)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSCCC-EEEEEESSCBS-----SSSTTS--SCCEEEEECCCS--SC-EEEEEEE
T ss_pred             CeEEcCCCcEEEcCCCEEEEEeECCCCCCCC-EEEEEECCEec-----cCCCCc--CCCCeEEEcccc--cC-ceEEEEE
Confidence            4577888899999999999999997764331 79999999854     223333  567899999998  78 5999999


Q ss_pred             eeccCCcEEeCCCeEEEE
Q psy9140          88 THKLTGERKISPPSQVMV  105 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V  105 (114)
                      .|.++.  ..|..+.|.|
T Consensus       176 ~N~~g~--~~s~~~~l~V  191 (195)
T 2c5d_C          176 HNAKGV--TTSRTATITV  191 (195)
T ss_dssp             EETTEE--EECCCEEEEE
T ss_pred             EcCCCc--eEEEEEEEEE
Confidence            998764  2467889999

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.41  E-value=1.4e-13  Score=110.77  Aligned_cols=94  Identities=17%  Similarity=0.297  Sum_probs=75.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--c-CCcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--T-AGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~-~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...|.+..+.+|.++.|.|.+.+.+.+  .++|+||+..+     ..+++|.+.  . .+.|.|.+++.+|+| .|+
T Consensus       198 p~~~~~p~~~~v~~G~~~~l~C~~~g~p~p--~i~W~k~g~~i-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~  269 (570)
T 3b43_A          198 PFFDLKPVSVDLALGESGTFKCHVTGTAPI--KITWAKDNREI-----RPGGNYKMTLVENTATLTVLKVTKGDAG-QYT  269 (570)
T ss_dssp             CEEEECCCCBCCBSBSCEEEEEEEESSSCC--EEEEEETTEEC-----CTTSSEEEEEETTEEEEEESSBCGGGCE-EEE
T ss_pred             CccccCCceeEecCCCeEEEEEEEEECCCC--EEEEEECCEEC-----cCCCcEEEEEECCEEEEEEcccCcccCE-EEE
Confidence            457788999999999999999999775443  89999999854     445666553  2 368999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |.|.|..+.   .+..+.|.|.+++.++
T Consensus       270 C~a~N~~g~---~~~~~~l~V~~~p~~~  294 (570)
T 3b43_A          270 CYASNVAGK---DSCSAQLGVQEPPRFI  294 (570)
T ss_dssp             EEEEETTEE---EEEEEEECCBCCCEEE
T ss_pred             EEEECCCCc---EEEEEEEEeecCCccc
Confidence            999998653   4667889888877653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.41  E-value=9.4e-13  Score=91.14  Aligned_cols=97  Identities=15%  Similarity=0.160  Sum_probs=68.5

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCC--cceEEEeeCC----------------eeeeeeeeccCCcEEEcc------C
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHN--LLLIAWLREG----------------VSEARSIIHSGGRYSITT------A   66 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~--~~~vsW~kd~----------------~~~~~~~~~~~~r~~v~~------~   66 (114)
                      ...++...+.+|++|.|.|.+.+....  .+.+.|+|++                ..+........+|+.+..      +
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence            345677789999999999999665422  1289999943                211000012267888864      6


Q ss_pred             CcEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          67 GALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        67 G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +.|.|.+++.+|+| .|+|.|.|..+.   .+..+.|.|..++.+
T Consensus        84 ~~L~i~~v~~~D~G-~Y~C~~~~~~~~---~~~~~~l~V~~~p~~  124 (214)
T 3jz7_A           84 ASINVTNLQLSDIG-TYQCKVKKAPGV---ANKKFLLTVLVKPSG  124 (214)
T ss_dssp             CCEEECSCCGGGCE-EEEEEEEETTEE---EEEEEEEEEECCCBS
T ss_pred             ccEEEccCChhhCe-EEEEEEEeCCCc---cccEEEEEEEcCCCC
Confidence            78999999999995 999999997542   456788999877654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.41  E-value=5.5e-13  Score=96.94  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=74.2

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIR   82 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~   82 (114)
                      .+.|.+.|++..+.+|+++.|.|.+.+.+  . .+.|+| ++..     +..+.|+.+..+|   .|.|.+++.+|+| .
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p--~-~v~W~~~~g~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~   74 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEP--E-SIDWYNPQGEK-----IISTQRVVVQKEGVRSRLTIYNANIEDAG-I   74 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCC--S-EEECBCTTCCB-----CCCBTTEEEEEETTEEEEEECSCCGGGCE-E
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCC--C-ceEEECCCCcC-----ccCCCcEEEecCCCEEEEEEccCCcccCE-E
Confidence            46789999999999999999999997642  2 799999 5553     3456789887766   8999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.|.|..+..  .+....|.|..+..+
T Consensus        75 Y~C~~~n~~g~~--~~~~~~l~v~~~~~~  101 (291)
T 2wim_A           75 YRCQATDAKGQT--QEATVVLEIYQKLTF  101 (291)
T ss_dssp             EEEEEECSSSCE--EEEEEEEEEECCCBC
T ss_pred             EEEEEecccCce--EEEEEEEEecCCcce
Confidence            999999986542  344667777766544

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.41  E-value=3.2e-13  Score=86.30  Aligned_cols=62  Identities=23%  Similarity=0.348  Sum_probs=51.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-CCCCCCeeeEEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-GMEDSYIRYYCQTTH   89 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-~~~D~gg~Y~C~a~n   89 (114)
                      .+|+...+++|.+++|.|.+.+.+    .|+|+||+..+     ..+      .++.|.|.+| +.+|+| .|+|.|.+
T Consensus         4 ~~p~~~v~~~G~~v~L~C~~~g~P----~i~W~kdg~~l-----~~~------~~~~L~I~~v~~~~DsG-~Y~C~A~t   66 (82)
T 3r08_E            4 ENIEYKVSISGTSVELTCPLDSDE----NLKWEKNGQEL-----PQK------HDKHLVLQDFSEVEDSG-YYVCYTPA   66 (82)
T ss_dssp             CCCCCEEEEETTEEEEECSSCCCS----SCEEEETTEEC-----TTC------CSSCCBCCSCCTTTTCS-CEEEECSS
T ss_pred             CCCceeEEEcCCeEEEEEECCCCC----cEEEEECCEEC-----cCC------CCCEEEECccCccCcCE-EEEEEEcc
Confidence            468889999999999999997753    38999999864     212      5789999996 889996 99999987

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.41  E-value=8.1e-13  Score=96.33  Aligned_cols=96  Identities=18%  Similarity=0.272  Sum_probs=67.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEE----EccCCcEEEeecCCCCCCeee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYS----ITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~----v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      +.+.+.|.+..+.+|.++.|.|.+.+.+.+  .++|++++..+-.. .....++.    ....+.|.|.+++.+|+| .|
T Consensus       182 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y  257 (289)
T 3mjg_X          182 INVSVNAVQTVVRQGENITLMCIVIGNEVV--NFEWTYPRKESGRL-VEPVTDFLLDMPYHIRSILHIPSAELEDSG-TY  257 (289)
T ss_dssp             CCCEEEESCSEEETTSCEEEEEEEESCSSB--EEEEECTTSSSSCC-CCCEEEESCTTTTEEEEEEEESSCCSSCCE-EE
T ss_pred             CCcEEeCCcceeEcCCCEEEEEEECCCCCc--ceEEEcCCccCCCc-ccccccccCCcceEEEEEEEEcccChhhCc-EE
Confidence            457778888899999999999999775433  89999876532100 00001110    112468999999999994 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      +|.|.|.++.   .+..+.|.|.....
T Consensus       258 ~C~a~N~~G~---~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          258 TCNVTESVND---HQDEKAINITVVES  281 (289)
T ss_dssp             EEEEEETTTT---EEEEEEEEEEEEC-
T ss_pred             EEEeecCCCC---ceeEEEEEEEEEec
Confidence            9999999876   45577888876543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.41  E-value=1.3e-12  Score=91.58  Aligned_cols=92  Identities=15%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC---ee--eeee----eeccCCcEEEcc---CCcEEEeecCC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG---VS--EARS----IIHSGGRYSITT---AGALHIRDTGM   76 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~---~~--~~~~----~~~~~~r~~v~~---~G~L~I~~v~~   76 (114)
                      .+...|++..+.+|++|.|.|.+.+.+.+  .+.|+|++   ..  ++..    ....++||.+..   ++.|.|.+++.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISN--YLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES   80 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCc--eEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence            34556888999999999999999775322  89999843   11  1000    011357998874   33899999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      +|+| .|+|.|.|..+.  ..+..+.|.|
T Consensus        81 ~D~G-~Y~C~~~~~~~~--~~~~~~~l~V  106 (213)
T 3r06_A           81 EDIG-SYYCQQYYNYPW--TFGPGTKLEI  106 (213)
T ss_dssp             GGCS-EEEEEECSSSSC--EECCCEEEEE
T ss_pred             ccCE-EEEEecccCCce--EEcCCceEEE
Confidence            9996 999999986432  3556778888

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=91.99  Aligned_cols=85  Identities=22%  Similarity=0.331  Sum_probs=69.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      ..|.+.|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+     ..+      .++.|.|.+++.+|+| .|+|.|
T Consensus        19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~-----~~~------~~~~L~i~~v~~~d~G-~Y~C~~   84 (218)
T 3k0w_A           19 SKITVNPESKAVLAGQFVKLCCRATGHPFV--QYQWFKMNKEI-----PNG------NTSELIFNAVHVKDAG-FYVCRV   84 (218)
T ss_dssp             CCEEECCCCEEEETTSBEEEECEETTTTSS--EEEEEETTEEC-----TTC------CSSEEEETTCCGGGCE-EEEEEE
T ss_pred             CEEEECCCCeEEeCCCcEEEEeeecCCCCC--EEEEEECCEEC-----CCC------CCCEEEEccCChhhCe-EeEEEE
Confidence            468899999999999999999999775433  89999999853     111      3578999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEecc
Q psy9140          88 THKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|..+.  ..+..+.|.|..+
T Consensus        85 ~n~~~~--~~s~~~~l~V~~~  103 (218)
T 3k0w_A           85 NNNFTF--EFSQWSQLDVCDI  103 (218)
T ss_dssp             ECTTCC--EECCCEEEEEECC
T ss_pred             EcCCCC--ceeeEEEEEEEcc
Confidence            998654  2567889998865

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.40  E-value=5.6e-13  Score=92.20  Aligned_cols=94  Identities=19%  Similarity=0.275  Sum_probs=68.5

Q ss_pred             eeeccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeee----eccCCcEEEc-cCCcEEEeecCCCCCCeee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSI----IHSGGRYSIT-TAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~----~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y   83 (114)
                      +...+.+..+.+|.++.|.|.+ .+++.+  .++|+|++..+....    ...+.+|.+. .++.|.|.+++.+|+| .|
T Consensus       110 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y  186 (209)
T 1nbq_A          110 KPTVNIPSSATIGNRAVLTCSEQDGSPPS--EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG-EY  186 (209)
T ss_dssp             CCCCCCBSEEETTSCEEECCCCCSCBSCC--EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC-CE
T ss_pred             CCCcccccceecCCEEEEEEeCCCCCCCc--eeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCe-EE
Confidence            4444556679999999999997 665444  899999998652110    0112466654 4679999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEec
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|.|.|..+.. ..|...+|.|++
T Consensus       187 ~C~a~n~~g~~-~~s~~v~l~V~d  209 (209)
T 1nbq_A          187 SCEARNGYGTP-MTSNAVRMEAVE  209 (209)
T ss_dssp             EEEEECSSSCC-EECCCBCCEEEC
T ss_pred             EEEEeCCcCcc-cccccEEEEEeC
Confidence            99999998653 446677887764

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.40  E-value=3.5e-13  Score=94.30  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|.+.|+ ..|.+|+++.|.|.+.+.  +. .+.|+|++..+..   ....+.....++.|.|.+|+.+|+| .|+|.|
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~--~~-~~~W~k~g~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a   77 (196)
T 2d3v_A            6 ATLWAEPG-SVISRGNSVTIRCQGTLE--AQ-EYRLVKEGSPEPW---DTQNPLEPKNKARFSIPSMTEHHAG-RYRCYY   77 (196)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTT--CC-EEEEEETTCSSCS---EEECCCSSTTEEEEEESSCCGGGCE-EEEEEE
T ss_pred             CEEEeCCC-CcccCCCeEEEEEeCCCC--Cc-EEEEEECCCCCCc---ccccccCCccccEEEeccCChhHCe-EEEEEE
Confidence            45788887 489999999999999763  22 7999999985421   0111111234678999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|..+. ...|..+.|.|.+
T Consensus        78 ~n~~g~-~~~s~~~~l~V~~   96 (196)
T 2d3v_A           78 YSPAGW-SEPSDPLELVVTG   96 (196)
T ss_dssp             EETTEE-CBCCCCEEEEEEC
T ss_pred             eCCCCc-CCcCccEEEEecC
Confidence            987432 2245678899886

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.40  E-value=8.9e-13  Score=95.35  Aligned_cols=100  Identities=17%  Similarity=0.204  Sum_probs=69.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eee----eeccCCcEEEccCC---cEEEeecCC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARS----IIHSGGRYSITTAG---ALHIRDTGM   76 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~~   76 (114)
                      ....+|.+..|.+|++|+|.|.+.+...+...+.|+|++  ...   +..    .....+||.+..++   .|.|++++.
T Consensus         4 ~~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   83 (256)
T 3ux9_B            4 IVLTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQS   83 (256)
T ss_dssp             CCCBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCG
T ss_pred             ceEecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCCh
Confidence            344567788999999999999996642121279999953  111   100    00135799887544   699999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|+| .|+|.+.|..++....+..+.|.|.++.
T Consensus        84 ~DsG-~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           84 EDEA-DYYCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             GGCE-EEEEEEEETTTTEEEECCCEEEEEC---
T ss_pred             hhCE-EEEEEEEECCCCceEECCCEEEEEECCC
Confidence            9995 9999999976555566778899998764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.40  E-value=5.3e-13  Score=100.83  Aligned_cols=90  Identities=16%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCcEE-EccCCcEEEeecCCCCCCeeeEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYS-ITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r~~-v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      |.|...|++..+.+|+++.|.|.+.+ .+.+  .++|+||+..+.    ....++. ...+|.|.|.+++.+|+| .|+|
T Consensus         7 P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~k~g~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C   79 (395)
T 1bih_A            7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGV--KYSWKKDGKSYN----WQEHNAALRKDEGSLVFLRPQASDEG-HYQC   79 (395)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSSC--EEEEEESSSBCC----TTTTTEEECTTSCCEEESSCCGGGCE-EEEE
T ss_pred             CEeecCCCceEEeCCCEEEEEEEEecCCCCc--eEEEEECCcCcc----cccceEEEecCCceEEEecCCCCCCc-EEEE
Confidence            56889999999999999999999966 3222  899999998641    1222443 456889999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEe
Q psy9140          86 QTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.|..+.  ..+..+.|.|.
T Consensus        80 ~a~n~~g~--~~s~~~~l~v~   98 (395)
T 1bih_A           80 FAETPAGV--ASSRVISFRKT   98 (395)
T ss_dssp             EEEETTEE--EECCCEEEEEE
T ss_pred             EEEeCCCe--EEeEEEEEEEE
Confidence            99997643  24556777665

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.40  E-value=2.7e-13  Score=101.11  Aligned_cols=95  Identities=19%  Similarity=0.141  Sum_probs=74.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecC-------CCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIP-------AYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~-------~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~g   80 (114)
                      +.|...|++..|.+|+++.|.|.+.       +.+.+  .+.|+|++..+.. ....+.|+. ..+|.|.|.+++.+|+|
T Consensus        19 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~--~v~W~k~~~~~~~-~~~~~~~~~-~~~~~L~i~~v~~~D~G   94 (339)
T 3o4o_C           19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI--NLTWHKNDSARTV-PGEEETRMW-AQDGALWLLPALQEDSG   94 (339)
T ss_dssp             EEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCC--BCCCEESSCCSCC-SCCSSSCEE-EETTEEEESSBCTTCCE
T ss_pred             HhhCcCceEEEEECCccEEEEeccccccccccCCCCc--eEEEEECCCCccc-CccccccEE-eeCCeEEECCCCcccCE
Confidence            6688999999999999999999996       43332  8999999986421 112255775 45899999999999995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                       .|+|.|.|..+   ..+..+.|.|.++..
T Consensus        95 -~Y~C~~~n~~g---~~~~~~~l~V~~~~~  120 (339)
T 3o4o_C           95 -TYVCTTRNASY---CDKMSIELRVFENTD  120 (339)
T ss_dssp             -EEECCEEETTE---EEEEEEEEEEECSCG
T ss_pred             -EEEEEEECCcc---eEEEEEEEEEEcCCC
Confidence             99999999754   245677888887654

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=87.13  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=61.7

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeee----ee---e------eeccCCcEEEcc------CCcEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSE----AR---S------IIHSGGRYSITT------AGALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~----~~---~------~~~~~~r~~v~~------~G~L~I~   72 (114)
                      .|....|.+|++|.|+|.+.+...... .|.|+|.+...    +.   +      ...-.+|+.+..      +.+|.|+
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   85 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   85 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEEC
Confidence            466778999999999999865444434 78999965321    00   0      001135776642      3579999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      ||+.+|+| .|.|.+.+.-.+.  .+..++|.|.|+.
T Consensus        86 ~v~~~DsG-~Y~C~v~t~~~g~--~~~~~~L~VlE~~  119 (123)
T 4gjt_B           86 NAVQADEG-EYECRVSTFPAGS--FQARLRLRVLEHH  119 (123)
T ss_dssp             SCCSSSCS-EEEEEEEESSSCE--EEEEEEEEC----
T ss_pred             CCChHHCE-EEEEEEEECCCCe--EEeEEEEEEEECc
Confidence            99999996 9999988743332  4557889988753

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.40  E-value=1.1e-12  Score=91.92  Aligned_cols=93  Identities=22%  Similarity=0.321  Sum_probs=67.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--eee---e----eeeccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SEA---R----SIIHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~~---~----~~~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      +...|.+..+.+|.+|.|.|.+.+.+.+  .+.|+|++.  .+.   +    ......+||.+..++   .|.|.+++.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGN--NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCC--CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChh
Confidence            3455888899999999999999775433  799998542  110   0    001123799887544   8999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+| .|+|.|.|..+.  ..+..+.|.|..
T Consensus        82 D~G-~Y~C~~~~~~~~--~~~~~~~l~V~~  108 (213)
T 3d9a_L           82 DFG-MYFCQQSNSWPY--TFGGGTKLEIKR  108 (213)
T ss_dssp             GCE-EEEEEECSSSSC--EECCCEEEEECC
T ss_pred             hCE-EEEEeeecCCcc--eeCCCEEEEEec
Confidence            995 999999997542  345567888875

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.40  E-value=7.8e-13  Score=92.19  Aligned_cols=88  Identities=15%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCC--Cc-ceEEEeeCCeeeeeeeeccCCcEEEccC------CcEEEeecCCCCCCeee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNH--NL-LLIAWLREGVSEARSIIHSGGRYSITTA------GALHIRDTGMEDSYIRY   83 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~--~~-~~vsW~kd~~~~~~~~~~~~~r~~v~~~------G~L~I~~v~~~D~gg~Y   83 (114)
                      .++...+.+|+++.|.|.+.+.+.  .. +.+.|+|++..    .....+|+.+..+      +.|.|.+|+.+|+| .|
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~----~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y   82 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVEND----TSLQSERATLLEEQLPLGKALFHIPSVQVRDSG-QY   82 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC------CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCE-EE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCc----ccccCCceEEeeccccCCeeEEEECCCCHHHCc-EE
Confidence            445678999999999999976542  11 28999994443    2345678887754      68999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.|.|..+.   .+....|.|..+
T Consensus        83 ~C~~~~~~~~---~~~~~~l~V~~~  104 (202)
T 3bp6_B           83 RCLVICGAAW---DYKYLTVKVKAS  104 (202)
T ss_dssp             EEEEEETTEE---EEEEEEEEEEBC
T ss_pred             EEEEEeCCCc---ceEEEEEEecCC
Confidence            9999997542   355778888764

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.40  E-value=3.4e-13  Score=94.31  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=67.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|.+.|+ ..|.+|+++.|.|.+.+.+.   .+.|+|++..+.   .....+.....++.|.|.+|+.+|+| .|+|.|
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~~---~~~W~k~g~~~~---~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a   77 (198)
T 1ugn_A            6 PTLWAEPG-SVITQGSPVTLRCQGGQETQ---EYRLYREKKTAP---WITRIPQELVKKGQFPIPSITWEHTG-RYRCYY   77 (198)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTTCC---CEEEEESSSCCH---HHHTSCHHHHTTTEEEESSCCGGGCE-EEEEEE
T ss_pred             CeEeccCC-CcccCCCcEEEEEEecCCCc---EEEEEECCcccc---ccccccccCCcccEEEECCCCHHHCe-EEEEEE
Confidence            45778886 58999999999999976432   689999998541   11112222345789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|..++....|..+.|.|..
T Consensus        78 ~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           78 GSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             EETTTEECCCCCCEEEEEEC
T ss_pred             ECCCCCcccCCccEEEEEcc
Confidence            99752211246688899986

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.40  E-value=1.3e-12  Score=91.62  Aligned_cols=95  Identities=17%  Similarity=0.319  Sum_probs=70.2

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcE----EEeecCCCCCCe
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGAL----HIRDTGMEDSYI   81 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L----~I~~v~~~D~gg   81 (114)
                      ..+.|...|++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+.. ......|+ ...+|.|    .|.+++.+|+| 
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~--~v~W~~~g~~~~~-~~~~~~~~-~~~~~~~~~~l~i~~v~~~d~G-   82 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVST-NEKKSHRV-QFKDGALFFYRTMQGKKEQDGG-   82 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCC--EEEEEETTEECCC-SSSSSSEE-ECTTSCEEESSCCBSSSCBCCE-
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCC--eEEEEECCcCccC-CCccceeE-EecCCceEEEEEeccCCcccCc-
Confidence            44668899999999999999999999765443  8999999986521 11112333 3456766    68999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|+|.|.|..+.  ..+..+.|.|..
T Consensus        83 ~Y~C~~~n~~g~--~~~~~~~l~v~~  106 (217)
T 2vr9_A           83 EYWCVAKNRVGQ--AVSRHASLQIAV  106 (217)
T ss_dssp             EEEEEEEETTEE--EECCCEEEEECE
T ss_pred             eEEEEEecCCCc--cccccceEEEEE
Confidence            999999997643  245577887775

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.40  E-value=8e-13  Score=99.85  Aligned_cols=95  Identities=19%  Similarity=0.240  Sum_probs=71.8

Q ss_pred             ccceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEee-CCeeeeeeeeccCCcEEEccCCcEEEeecCCCC------
Q psy9140           7 SSDYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLR-EGVSEARSIIHSGGRYSITTAGALHIRDTGMED------   78 (114)
Q Consensus         7 ~~~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~k-d~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D------   78 (114)
                      .|.|..+|.+. .+.+|..+.|.|.+.+.+.+  .++|+| |+..+    ....+.+.+..+|.|.|.+++.+|      
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p--~v~W~k~~g~~~----~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d   76 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMP--EIIWIRSDGTAV----GDVPGLRQISSDGKLVFPPFRAEDYRQEVH   76 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCC--EEEEEETTSCBC----CCBTTTBEECSTTEEEECCCCGGGCCHHHH
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCC--EEEEEcCCCCcc----ccCCCceEEcCCceEEecccChhhcccccc
Confidence            36788999885 47789999999999765444  899999 66643    122344556789999999999998      


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      + |.|+|.|.|..+.  ..|....|.|..+..
T Consensus        77 ~-G~Y~C~a~n~~g~--~~s~~~~v~v~~~p~  105 (388)
T 2v5m_A           77 A-QVYACLARNQFGS--IISRDVHVRAVVAQY  105 (388)
T ss_dssp             E-EEEEEEEEETTEE--EECCCEEEEEECCCC
T ss_pred             C-ceEEEEEEccCCe--EEecceEEEEccccc
Confidence            8 5999999998653  346677888775543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.39  E-value=1.4e-12  Score=92.82  Aligned_cols=85  Identities=22%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+.+.|.+..+.+|+++.|.|.+.+.+.+. .+.|+||+..+     ..+       .+.|.|.+++.+|+| .|+|.|
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~-~v~W~k~g~~l-----~~~-------~~~L~i~~v~~~D~G-~Y~C~a   73 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQ-STQWFHNESLI-----SSQ-------ASSYFIDAATVDDSG-EYRCQT   73 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCC-CEEEEETTEEE-----SCC-------SSEEEESSCCGGGCE-EEEEEE
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCc-EEEEEECCEEc-----ccC-------ccEEEEecccccCCE-EEEEEe
Confidence            4477889889999999999999997754331 59999999854     111       289999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|..     .+..+.|.|..+..+
T Consensus        74 ~n~~-----~s~~~~l~V~~~p~~   92 (204)
T 3sgj_C           74 QLST-----LSDPVQLEVHIGWLL   92 (204)
T ss_dssp             TTSB-----CCCCEEEEEECSSEE
T ss_pred             CCCc-----ccccEEEEEecCceE
Confidence            9842     466889999876543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.39  E-value=7.4e-13  Score=94.95  Aligned_cols=73  Identities=11%  Similarity=0.139  Sum_probs=57.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---C--cEEEeecCCCCCCee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---G--ALHIRDTGMEDSYIR   82 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G--~L~I~~v~~~D~gg~   82 (114)
                      ||-..+.+..|++|+.+.|.|.+.+ .+.+  .++|+||+..+     ..+.||.+..+   |  .|.|.+++.+|+| .
T Consensus         4 p~~~~~~~~~v~eg~~v~l~c~~~~~~P~p--~i~W~kng~~l-----~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G-~   75 (207)
T 3rbs_A            4 PFTKSELAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEI-----FEGPKYKMHIDRNTGIIEMFMEKLQDEDEG-T   75 (207)
T ss_dssp             --CCEEEEEEECGGGCEEEEEECSCCCSCC--EEEEEETTEEE-----CSSSSCEEEECTTTCEEEEEESCCCGGGCE-E
T ss_pred             CeeecCCceEEEeCCeEEEEEEEecCCCCC--EEEEEECCEEC-----ccCCCEEEEEeCCCCEEEEEECCCChhhCE-E
Confidence            4445577899999999999999854 3333  89999999964     45667766533   3  5999999999995 9


Q ss_pred             eEEEEee
Q psy9140          83 YYCQTTH   89 (114)
Q Consensus        83 Y~C~a~n   89 (114)
                      |+|.|.|
T Consensus        76 Y~C~a~N   82 (207)
T 3rbs_A           76 YTFQLQD   82 (207)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9999998

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.39  E-value=7.8e-13  Score=92.30  Aligned_cols=92  Identities=13%  Similarity=-0.030  Sum_probs=66.0

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .+.+.+.|+. .|.+|++++|.|.+++.  + ..+.|+|++..+.   .....+.....++.|.|.+|+.+|+| .|+|.
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~--~-~~~~w~k~g~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~   75 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYG--A-VEYQLHFEGSLFA---VDRPKPPERINKVKFYIPDMNSRMAG-QYSCI   75 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT--C-CEEEEEETTEEEE---EECCSSCTTCCEEEEEESSCCGGGCE-EEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCC--C-CEEEEEECCCccc---ccccccCCCcceeEEEeCcCCcccCe-EEEEE
Confidence            3557788887 89999999999998642  1 2789999998642   11111222234678999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEec
Q psy9140          87 TTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|..+ ....|....|.|.+
T Consensus        76 ~~~~~~-~~~~s~~~~l~V~~   95 (188)
T 1oll_A           76 YRVGEL-WSEPSNLLDLVVTE   95 (188)
T ss_dssp             EEETTE-ECCCCCCEEEEEES
T ss_pred             ecCCCC-CCCCCCceEEEecc
Confidence            988532 11246678888874

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.39  E-value=6.2e-13  Score=93.28  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             cceeecc----ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140           8 SDYEINT----GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~----~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      +.|...+    ++..+.+|+++.|.|.+.+.+.+  .+.|+|++..+... ...........++.|.|.+++.+|+| .|
T Consensus        16 P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y   91 (231)
T 3ojm_B           16 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQE-HRIGGYKVRNQHWSLIMESVVPSDKG-NY   91 (231)
T ss_dssp             EEESCGGGGCCSCEEEETTSCEEEECCEEEESCC--EEEEEETTEECCGG-GSTTCCEEEGGGTEEEECSCCGGGCE-EE
T ss_pred             CccccccccCceeEEEccCCCEEEEEecccCCCC--eEEEEECCcccccc-ccccceeeecCcceEEEecCCcccCE-EE
Confidence            3454444    78899999999999999765443  89999999864210 01111133344668999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.|.|..+.   .+..+.|.|..+
T Consensus        92 ~C~~~n~~~~---~~~~~~l~V~~~  113 (231)
T 3ojm_B           92 TCVVENEYGS---INHTYHLDVVER  113 (231)
T ss_dssp             EEEEEETTEE---EEEEEEEEEECC
T ss_pred             EEEEecccCc---ccccEEEEEEcC
Confidence            9999997653   455678888753

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.39  E-value=2.9e-13  Score=98.29  Aligned_cols=96  Identities=14%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeeeeec--cCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARSIIH--SGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~~~~--~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      .+.+...|.+..+.+|.++.|.|.+.+ .+.+  .+.|+|++..+......  ....+  ..++.|.|.+++.+|+| .|
T Consensus       186 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G-~Y  260 (289)
T 3ejj_X          186 PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGF--NVILKRGDTKLEIPLNSDFQDNYY--KKVRALSLNAVDFQDAG-IY  260 (289)
T ss_dssp             CCEEEEESSSEECCSSSCEEEEEEEEESSSCC--EEEEEETTEECCCCEEEEECSSSE--EEEEEEEESSCCSSSCE-EE
T ss_pred             CCeEEecCCceEEEeCCcEEEEEEeCCCCCce--EEEEEECCEEeeccCCcccccceE--EeeEEEEEEeecccCCE-EE
Confidence            355778888888889999999999965 3332  89999999865211100  12222  23578999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      +|.|.|.++.   .+..+.|.+.+++.
T Consensus       261 ~C~a~N~~G~---~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          261 SCVASNDVGT---RTATMNFQVVESHH  284 (289)
T ss_dssp             EEEEECSSCE---EEEEEEEECC----
T ss_pred             EEEEEcCCCC---ccccEEEEEEeccc
Confidence            9999999864   56688888887654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.39  E-value=1.5e-12  Score=89.43  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      |..+++.+.+....+.+|.++.|.|.+.+.. +.+.++|+||+..+.     ..     ..++.|.|.+++.+|+| .|+
T Consensus        83 V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~~~~-----~~-----~~~~~L~i~~v~~~d~G-~Y~  150 (176)
T 1f2q_A           83 VFSDWLLLQASAEVVMEGQPLFLRCHGWRNW-DVYKVIYYKDGEALK-----YW-----YENHNISITNATVEDSG-TYY  150 (176)
T ss_dssp             EECSSEEEEESCSEEETTSCEEEEEEEGGGC-CEEEEEEEETTEECC-----SC-----CCSSEEEESSCCGGGCE-EEE
T ss_pred             EeCcceeecCCcceeeCCCCEEEEEEecCCC-CceEEEEEECCEEEe-----ee-----cCCCeEEECCCCcccCE-EEE
Confidence            3345566667778899999999999985321 112899999998541     11     13679999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.|..++  ..|....|.|.+++.
T Consensus       151 C~a~n~~~~--~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          151 CTGKVWQLD--YESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEETTEE--EECCCEEEEEECSCC
T ss_pred             EEEEeCCcc--eEecCEEEEEecCCC
Confidence            999997332  467789999998865

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.39  E-value=2e-12  Score=86.69  Aligned_cols=91  Identities=18%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeee-ee-----------eeccCCcEEEccC------CcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEA-RS-----------IIHSGGRYSITTA------GALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~-~~-----------~~~~~~r~~v~~~------G~L~I   71 (114)
                      .+.+....+..|++|+|+|.+.+...+.. .|.|+|++.... +.           ...-.+|+.+..+      .+|.|
T Consensus         9 t~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I   88 (125)
T 4gos_A            9 TVTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRL   88 (125)
T ss_dssp             CEEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEE
T ss_pred             EccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEE
Confidence            45566678889999999999854332223 799999764211 00           0112457776532      47999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      +||+.+|+| .|+|.+.|..+.   .+....|.|
T Consensus        89 ~~v~~~D~G-~Y~C~v~~~~g~---~~~~v~LkV  118 (125)
T 4gos_A           89 KNVQLTDAG-TYKCYIITSKGK---GNANLEYKT  118 (125)
T ss_dssp             SSCCGGGCE-EEEEEEEETTEE---EEEEEEEEE
T ss_pred             CCCChHHCE-EEEEEEEeCCCe---EEEEEEEEE
Confidence            999999995 999999997542   344555555

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.38  E-value=2.1e-12  Score=91.56  Aligned_cols=86  Identities=14%  Similarity=0.140  Sum_probs=62.1

Q ss_pred             eccceeEEEeC--CeEEEEeecCCCCCCcceEEEeeC--CeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          12 INTGNTFVLRG--NIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        12 v~~~d~~v~~G--~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      .+|++..+.+|  ++|+|.|.+.+ +.+  .++|.|+  ++.+    +..+.++...+++.|.|.+++.+|+| .|+|.|
T Consensus        12 ~~p~~v~v~eG~~~~v~L~C~~~~-p~~--~v~w~~~~~~g~~----~~~~~~~~~~~~~~l~I~~v~~~D~G-~Y~C~a   83 (213)
T 2x1w_L           12 DQHGVVYITENKNKTVVIPCLGSI-SNL--NVSLCARYPEKRF----VPDGNRISWDSKKGFTIPSYMISYAG-MVFCEA   83 (213)
T ss_dssp             --CEEEEECCSTTCEEEECCCBSS-TTC--CEEEEEETTTEEE----CCCSSSCEEETTTEEEEEGGGTTTCS-EEEEEE
T ss_pred             CCceEEEEecCCCccEEEeeccCC-CCc--EEEEEhhcCCCcc----ccCCCcccccCCccEEEccCChhcCc-eEEEEE
Confidence            35689999999  99999999864 222  7899885  3432    23456777778899999999999996 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|.  +....|....|.|..
T Consensus        84 ~n~--~~~~~s~~~~l~v~~  101 (213)
T 2x1w_L           84 KIN--DESYQSIMYIVVVVG  101 (213)
T ss_dssp             C------CEECCCEEEEECB
T ss_pred             EEC--CeeEEEEEEEEEEeC
Confidence            984  333456567887753

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.38  E-value=9.4e-13  Score=91.90  Aligned_cols=87  Identities=15%  Similarity=0.198  Sum_probs=63.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .+...| +..|.+|.++.|.|.+.+.  + ..+.|+||+..+.     . .+.....++.|.|.+|+.+|+| .|+|.|.
T Consensus       101 ~i~~~p-~~~v~~G~~v~L~C~~~~~--~-~~~~w~k~g~~~~-----~-~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~  169 (188)
T 1oll_A          101 TLSVHP-GPEVISGEKVTFYCRLDTA--T-SMFLLLKEGRSSH-----V-QRGYGKVQAEFPLGPVTTAHRG-TYRCFGS  169 (188)
T ss_dssp             EEEEES-CSEEETTCEEEEEEECSSS--C-SEEEEEEESSSCE-----E-EEEECSSEEEEEEEECCGGGCE-EEEEECE
T ss_pred             eEEECC-CCccccCCEEEEEEEcCCC--C-CEEEEEECCcccc-----c-cccCCCceeEEEECCCCcCCCc-EEEEEEE
Confidence            344455 5679999999999998542  1 2789999997541     1 1223345789999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEe
Q psy9140          89 HKLTGERKISPPSQVMVS  106 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~  106 (114)
                      |........|.+..|.|+
T Consensus       170 n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          170 YNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EETTEECCCCCCEEEEEE
T ss_pred             cCCCcCCCCCCcEEEEec
Confidence            874211235778888886

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.38  E-value=1.4e-12  Score=92.53  Aligned_cols=88  Identities=14%  Similarity=0.243  Sum_probs=68.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|.++.|.|.+.+.+.+  .++|+|++..+     ..+      .++.|.|.+++.+|+| .|+|.|
T Consensus       119 p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~--~v~W~~~~~~~-----~~~------~~~~L~i~~v~~~d~G-~Y~C~a  184 (218)
T 3k0w_A          119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPL-----THE------TKKLYMVPYVDLEHQG-TYWCHV  184 (218)
T ss_dssp             CEEEECCCCEEECTTCCEEEECEEEBSSCC--EEEEEETTEEC-----TTC------CSSEEEESSCCGGGCE-EEEEEE
T ss_pred             ceEEECCCceeecCCCcEEEEEEecccCCC--eEEEEECCEEC-----CCC------CCCEEEEeecChhcCE-EEEEEE
Confidence            467788888999999999999999665444  89999999854     222      2468999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|..+.  ..|....|.|.+...+
T Consensus       185 ~n~~g~--~~s~~~~l~V~~~~~~  206 (218)
T 3k0w_A          185 YNDRDS--QDSKKVEIIIDELNNL  206 (218)
T ss_dssp             ECSSCE--EECCCEEEEECC----
T ss_pred             EcCCCC--ceeeeEEEEEeCCccC
Confidence            998654  3677999999875543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.38  E-value=1.7e-12  Score=91.18  Aligned_cols=90  Identities=14%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eee----eeccCCcEEEccCC---cEEEeecCCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARS----IIHSGGRYSITTAG---ALHIRDTGMEDSY   80 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~~~D~g   80 (114)
                      +|++..+.+|.+|.|.|.+.+.+.+  .+.|+|++  ..+   ++.    .....+||.+..++   .|.|.+++.+|+ 
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-   82 (210)
T 1lk3_L            6 QPPALTVSPGEKLTISCKASESVTS--RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT-   82 (210)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CCCcEEEcCCCCEEEEeeCCCccCC--CEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC-
Confidence            3889999999999999999775433  79999853  221   100    00124799887544   899999999999 


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|+|.|.|..+.  ..+..+.|.|..
T Consensus        83 G~Y~C~~~~~~~~--~~~~~~~l~V~~  107 (210)
T 1lk3_L           83 AIYFCQQSWNGPL--TFGAGTKLELKR  107 (210)
T ss_dssp             EEEEEEECSSSSC--EECCCEEEEECC
T ss_pred             eEEEEEEEcCCCc--eeCCCEEEEEcC
Confidence            5999999997542  244566888875

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.38  E-value=5.7e-13  Score=95.83  Aligned_cols=91  Identities=13%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             ceeEEEeCCeEEEEeec---CCCCCCcceEEEeeCCeeeee------------eeeccCCcEEEcc---CCcEEEeecCC
Q psy9140          15 GNTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEAR------------SIIHSGGRYSITT---AGALHIRDTGM   76 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~---~~~~~~~~~vsW~kd~~~~~~------------~~~~~~~r~~v~~---~G~L~I~~v~~   76 (114)
                      |+..+..|++|+|.|..   .+.+.+  .|+|+|++..+..            ......++|.+..   ++.|.|.+|+.
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~--~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   78 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEI--EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI   78 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTS--EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCG
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCc--EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCH
Confidence            46789999999999964   333222  8999998753210            0011234565543   34699999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|+| .|+|.|.|..+.   .+..+.|.|..|+.+
T Consensus        79 ~D~G-~Y~C~a~n~~g~---~~~~~~l~V~~p~~~  109 (203)
T 4fa8_A           79 SHDG-NYLCRMKLGETE---VTKQEHLSVVKPLTL  109 (203)
T ss_dssp             GGCE-EEEEEEEETTEE---EEEEEEEEEEEEEEE
T ss_pred             HHCe-EEEEEEEcCCCc---EEEEEEEEecCCcee
Confidence            9995 999999997543   566789999877654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=95.41  Aligned_cols=91  Identities=14%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +|...+.+..+.+|.++.|.|.+.+ +.+...++|.+++..    ....+.++.+.+++.|.|.+++.+|+| .|+|.|.
T Consensus        91 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~  164 (292)
T 4dkd_C           91 PWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGR----PLMRHTNYSFSPWHGFTIHRAKFIQSQ-DYQCSAL  164 (292)
T ss_dssp             CEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGC----CCCSSCCEECCSSSCCEETTCCGGGCS-EEEEEEC
T ss_pred             cccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCC----ccccCCcccccCCceEEECCCCHHHCe-EEEEEEE
Confidence            4678888999999999999999965 221127999998553    235677998888899999999999996 9999999


Q ss_pred             eccCCcEEeCCCeEEEEec
Q psy9140          89 HKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~~  107 (114)
                      |..+.  ..+....|.|..
T Consensus       165 n~~~~--~~s~~~~l~V~~  181 (292)
T 4dkd_C          165 MGGRK--VMSISIRLKVQK  181 (292)
T ss_dssp             STTSC--EECCCEEEEEEC
T ss_pred             eCCCc--eeEEEEEEEEeC
Confidence            87543  356688999986

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.38  E-value=2.5e-12  Score=91.52  Aligned_cols=89  Identities=12%  Similarity=0.137  Sum_probs=65.5

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      ..+....+....+.+|.++.|.|.+.+.... ..+.|+||+..+..          ...++.|.|.+++.+|+| .|+|.
T Consensus        88 ~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~-~~v~W~k~g~~~~~----------~~~~~~L~i~~v~~~D~G-~Y~C~  155 (204)
T 3sgj_C           88 IGWLLLQAPRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKGRKY----------FHHNSDFYIPKATLKDSG-SYFCR  155 (204)
T ss_dssp             CSSEEEECSCSEEETTCCEEEEEEEGGGCCC-EEEEEEETTEEEEE----------EEECCCEEESSCCGGGCE-EEEEE
T ss_pred             cCceEecCCceeEeCCCcEEEEEEecCCCCC-ceEEEEECCcEeec----------ccCCceEEECcCCcccCE-EEEEE
Confidence            3444455556789999999999999543221 28999999986411          113689999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEeccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |.|...+  ..|....|.|.++.
T Consensus       156 a~n~~~~--~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          156 GLVGSKN--VSSETVQITITQGL  176 (204)
T ss_dssp             EEETTEE--EECCCEEEEEEC--
T ss_pred             EEeCCCc--eecCcEEEEEeCcC
Confidence            9995332  47889999998765

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.38  E-value=2e-12  Score=92.32  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCC--CcceEEEeeCC--eeeeeee-------eccCCcEEEccCC---cEEEeec
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNH--NLLLIAWLREG--VSEARSI-------IHSGGRYSITTAG---ALHIRDT   74 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~--~~~~vsW~kd~--~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v   74 (114)
                      .+...|++..+.+|++|.|.|.+.+.+.  +...+.|+|++  ..+....       ....+||.+..++   .|.|.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            3566788999999999999999976531  01289999963  2110000       1125799887544   7999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +.+|+| .|+|.|.|..+.  ..+..+.|.|..+.
T Consensus        83 ~~~D~G-~Y~C~~~n~~~~--~~~~~~~l~V~~~~  114 (240)
T 1moe_A           83 EADDVA-TYYCQQTNEDPY--TFGGGTKLEIKGGG  114 (240)
T ss_dssp             CGGGCE-EEEEEECSSSSC--CBCCCEEEEECCCS
T ss_pred             ChhhCE-EEEEEEccCCce--eecCCEEEEEecCC
Confidence            999995 999999997432  24567889888753

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.38  E-value=5.3e-13  Score=91.20  Aligned_cols=80  Identities=21%  Similarity=0.337  Sum_probs=62.5

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      +..+.+|..+.|.|.+.+++.+  .+.|+|++..+     ..+.+|.+.. ++.|.|.+++.+|+| .|+|.|.|..+. 
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~g~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~-  177 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEP--AISWFRNGKLI-----EENEKYILKGSNTELTVRNIINSDGG-PYVCRATNKAGE-  177 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCC--EEEEEETTEEC-----CCSSSEEEETTTTEEEECSCCGGGCE-EEEEEEEETTEE-
T ss_pred             cccccCCCcEEEEEEEccCCCC--eEEEEECCEEC-----cCCCcEEEecCCCEEEEcCCChhhCe-eEEEEEEeCCCc-
Confidence            4467789999999999765444  89999999853     4567787764 568999999999995 999999998764 


Q ss_pred             EEeCCCeEEEEe
Q psy9140          95 RKISPPSQVMVS  106 (114)
Q Consensus        95 ~~~s~~a~L~V~  106 (114)
                        .+..+.|.|.
T Consensus       178 --~~~~~~l~V~  187 (189)
T 2v5t_A          178 --DEKQAFLQVF  187 (189)
T ss_dssp             --EEEEEEEEEE
T ss_pred             --eeEEEEEEEE
Confidence              3445666664

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.37  E-value=7.2e-13  Score=90.86  Aligned_cols=83  Identities=10%  Similarity=0.135  Sum_probs=65.9

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCC-CCCCeeeEEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGM-EDSYIRYYCQTTH   89 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~-~D~gg~Y~C~a~n   89 (114)
                      +....+.+|.++.|.|.+.+++.+  .++|+|++..+     ..+.++.+..+   +.|.|.+++. +|+ |.|+|.|.|
T Consensus       110 ~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~~d~-G~Y~C~a~n  181 (197)
T 3lcy_A          110 KEKYYGAVGSTLRLHVMYIGRPVP--AMTWFHGQKLL-----QNSENITIENTEHYTHLVMKNVQRKTHA-GKYKVQLSN  181 (197)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCC--EEEEEETTEEC-----CCCSSEEEEECSSEEEEEESSCCHHHHC-EEEEEEEEC
T ss_pred             CcceeecCCCeEEEEEEEeeeeCC--eeEEeECCEEC-----CCCCceEEEEcCCEEEEEEccccchhhC-ceEEEEEEc
Confidence            355678899999999999776544  89999999853     45678877654   6799999995 898 599999999


Q ss_pred             ccCCcEEeCCCeEEEEec
Q psy9140          90 KLTGERKISPPSQVMVSE  107 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~  107 (114)
                      .++.   .+..+.|.|.+
T Consensus       182 ~~g~---~~~~~~l~V~~  196 (197)
T 3lcy_A          182 VFGT---VDAILDVEIQD  196 (197)
T ss_dssp             SSCE---EEEEEEEEEEC
T ss_pred             CcCc---eEEEEEEEEec
Confidence            9864   45577788765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.37  E-value=3.1e-12  Score=90.31  Aligned_cols=95  Identities=16%  Similarity=0.307  Sum_probs=67.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-e-----------eccCCcEEEcc-----CCcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-I-----------IHSGGRYSITT-----AGALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-~-----------~~~~~r~~v~~-----~G~L~I~   72 (114)
                      .+|+...+.+|++|.|.|.+.+...+...+.|+|++  ..+.+. .           ....+||.+..     ++.|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            567788999999999999996543111289999973  322100 0           01257998864     3589999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCc-EEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGE-RKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~-~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|+|.|.|..+.. ...+..++|.|..
T Consensus        85 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           85 NLKNEDMA-TYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             SCCGGGCE-EEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CCCcccCE-EEEEEEeccCcccceeecCceEEEEec
Confidence            99999995 9999999975322 1345577888876

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.37  E-value=2.2e-12  Score=92.81  Aligned_cols=98  Identities=17%  Similarity=0.259  Sum_probs=67.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee------------eeccCCcEEEccCC-----c
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS------------IIHSGGRYSITTAG-----A   68 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~------------~~~~~~r~~v~~~G-----~   68 (114)
                      +.+...|.+..+.+|.+|.|.|.+.+.+.+...+.|+|+  +..+...            .....+||.+..++     .
T Consensus       132 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  211 (250)
T 3esu_F          132 EVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAY  211 (250)
T ss_dssp             ---CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEE
T ss_pred             ceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEE
Confidence            346677788899999999999999664322228999997  4432111            01224799987554     6


Q ss_pred             EEEeecCCCCCCeeeEEEEeecc-CCcEEeCCCeEEEEe
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHKL-TGERKISPPSQVMVS  106 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~l-~~~~~~s~~a~L~V~  106 (114)
                      |.|.+++.+|+| .|+|.|.|.. ......+..++|.|.
T Consensus       212 L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~~g~gt~L~V~  249 (250)
T 3esu_F          212 MQLSSLTSVDSA-VYFCARSGLLRYAMDYWGQGTSVTVS  249 (250)
T ss_dssp             EEECSCCGGGCE-EEEEEEECSSTTCCCEECCCEEEEEC
T ss_pred             EEECCCCcccCE-EEEEEEecCCCccHhhcCCCcceEec
Confidence            999999999995 9999999721 123345668888885

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.37  E-value=2.4e-12  Score=93.08  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeee----eeccCCcEEEccC---CcEEEeecCC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARS----IIHSGGRYSITTA---GALHIRDTGM   76 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~----~~~~~~r~~v~~~---G~L~I~~v~~   76 (114)
                      .+...|.+..+.+|++|.|.|.+.+.+.+  .+.|+|++  ..   ++..    ....++||.+..+   +.|.|.+++.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGN--NLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET   80 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCc--eEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCCh
Confidence            46678899999999999999999765433  79999963  11   1100    0012579988643   3799999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|+| .|.|.|.|...  ...+..+.|.|..+.
T Consensus        81 ~D~G-~Y~C~~~n~~~--~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           81 EDFG-MYFCQQSNSXP--YTFGGGTKLEITGGG  110 (242)
T ss_dssp             GGCE-EEEEEECSSSS--CEECCCEEEEEC---
T ss_pred             HHCE-EEEEeEecCCc--eEECCCEEEEEcCCC
Confidence            9995 99999999742  234567789888754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.37  E-value=4.5e-14  Score=115.27  Aligned_cols=93  Identities=16%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      .+.|...+.+..+.+|.++.|.|.+.+.+.+  .++|+||+..+     ..+.|+.+.. ++.|.|.+++.+|+| .|+|
T Consensus       666 ~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C  737 (772)
T 3v2a_R          666 APTITGNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETL-----VEDSGIVLKDGNRNLTIRRVRKEDEG-LYTC  737 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEeecCCCceEEeCCCCEEEEEEeCccCCC--eEEEEECCeEC-----cCCCCeEEcCCCcEEEECcCCHHHCE-EEEE
Confidence            4668888889999999999999999776544  89999999854     3455776654 789999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEecccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .|.|.++.   .+..+.|.|++++.
T Consensus       738 ~a~N~~G~---~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          738 QACSVLGC---AKVEAFFIIEGAQE  759 (772)
T ss_dssp             -------------------------
T ss_pred             EEEeCCcc---eeEEEEEEEECCCC
Confidence            99999875   46689999998764

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.37  E-value=2e-12  Score=83.73  Aligned_cols=92  Identities=15%  Similarity=0.233  Sum_probs=64.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee----eccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI----IHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~----~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      ....|.+..+.+|.+|.|.|.+.+...+  .+.|+|..  ..   ++...    ....+||.+..++   .|.|++++.+
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTSTDIDD--DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSE   81 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEeCCCeEEecCCCCEEEEEEECCCCCC--cEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHH
Confidence            3456788899999999999998654323  78999963  21   21100    0125799886433   7999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|.|.+.+.  +...-+..++|.|+
T Consensus        82 DsG-~Y~C~~~~~--~~~~fg~gt~l~V~  107 (107)
T 1i8k_A           82 DVG-DYYCLQSFN--VPLTFGCGTKLEIK  107 (107)
T ss_dssp             GCE-EEEEEECSS--SSCEECCCEEEEC-
T ss_pred             HCE-EEEEEEeeC--CCcEECCCeEEEeC
Confidence            995 999999985  23345667788764

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.37  E-value=4.3e-12  Score=92.43  Aligned_cols=96  Identities=20%  Similarity=0.288  Sum_probs=67.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee--------eccCCcEEEccC-----CcEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI--------IHSGGRYSITTA-----GALHIRD   73 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~--------~~~~~r~~v~~~-----G~L~I~~   73 (114)
                      .+|....+.+|.+|.|.|.+.+.+.+...+.|+|++  ..+   +...        ...++||.+..+     +.|.|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS   84 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred             ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            466778899999999999996653111279999962  211   1000        012579988642     4899999


Q ss_pred             cCCCCCCeeeEEEEeeccC------CcEEeCCCeEEEEecc
Q psy9140          74 TGMEDSYIRYYCQTTHKLT------GERKISPPSQVMVSEI  108 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~------~~~~~s~~a~L~V~~~  108 (114)
                      ++.+|+| .|+|.|.|..+      .....+..+.|.|..+
T Consensus        85 v~~~DsG-~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~  124 (257)
T 1f3r_B           85 LQTDDTG-TYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSG  124 (257)
T ss_dssp             CCTTCCE-EEEEEEESSSSCCSSCCCEEEECCCEEEEECSS
T ss_pred             CCcccCE-EEEEEEcccccCccccccccccCCceEEEEEeC
Confidence            9999995 99999999753      2223456778999865

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.37  E-value=7e-13  Score=94.58  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=55.8

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeec-CCCCCCeeeEEEEeeccCCcEEe
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDT-GMEDSYIRYYCQTTHKLTGERKI   97 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v-~~~D~gg~Y~C~a~n~l~~~~~~   97 (114)
                      .++|.++.|+|.  +.+.+  .++|+|++..+   ....+.++....+|.|.|.+| +.+|+| .|+|.|.|..+.    
T Consensus       125 ~~~G~~v~L~C~--g~p~p--~i~W~k~~~~l---~~~~~~~~~~~~~~~L~I~~v~~~~D~G-~Y~C~A~N~~g~----  192 (204)
T 1sy6_A          125 SISGTTVILTCP--QYPGS--EILWQHNDKNI---GGDEDDKNIGSDEDHLSLKEFSELEQSG-YYVCYPRGSKPE----  192 (204)
T ss_dssp             EEETTEEEEECS--CCCSS--CEEEEETTEEE---SCCTTCTTEEEETTEEEETTCCHHHHCE-EEEEEETTSCGG----
T ss_pred             eecCCcEEEEcC--CCCCC--ceEEEECCEEC---CCccCCceEecCCCEEEEeeCCccccCE-EEEEEeccCCCC----
Confidence            349999999998  34333  78999999864   222234454446899999999 999995 999999998763    


Q ss_pred             CCCeEEEEe
Q psy9140          98 SPPSQVMVS  106 (114)
Q Consensus        98 s~~a~L~V~  106 (114)
                      ...+.|.++
T Consensus       193 ~~s~~l~l~  201 (204)
T 1sy6_A          193 DANFYLYLR  201 (204)
T ss_dssp             GSSCEEEEE
T ss_pred             ceeEEEEEE
Confidence            334455544

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.37  E-value=4.2e-13  Score=95.61  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee-------------------eccCCcEEEccCCcEEEeec
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI-------------------IHSGGRYSITTAGALHIRDT   74 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~-------------------~~~~~r~~v~~~G~L~I~~v   74 (114)
                      +++..+.+|.++.|.|.+.+.+.+  .++|+|++..+....                   ..-..+.....++.|.|.++
T Consensus       143 ~~~~~v~~g~~v~L~C~~~g~p~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  220 (250)
T 2fbo_J          143 AEVVQVDEGNDITMTCPCTDCANA--NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAA  220 (250)
T ss_dssp             CSEEECCTTCCEEECCCEESCTTC--EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSC
T ss_pred             CceEEecCCCcEEEEEEecCCCCC--eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecC
Confidence            445677789999999999776555  899999987541100                   00013343335689999999


Q ss_pred             CCCCCCeeeEEEEeeccCC
Q psy9140          75 GMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.+|+| .|+|.|.|..+.
T Consensus       221 ~~~D~G-~Y~C~a~N~~g~  238 (250)
T 2fbo_J          221 KITDAG-RVWCELATGQGE  238 (250)
T ss_dssp             CGGGCE-EEEEEEESSSSG
T ss_pred             CcccCE-EEEEEecCCccc
Confidence            999995 999999996653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.36  E-value=6.7e-13  Score=93.52  Aligned_cols=93  Identities=17%  Similarity=0.265  Sum_probs=67.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeee----ee----eeccCCcEE----------EccCCcEEEeec
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA----RS----IIHSGGRYS----------ITTAGALHIRDT   74 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~----~~----~~~~~~r~~----------v~~~G~L~I~~v   74 (114)
                      .|++..+.+|+++.|.|.+.+... ...+.|+|++....    ..    .....+|+.          +..+|.|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v   84 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHD-HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA   84 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCS-EEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCC-ceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence            578889999999999999976532 12899998755311    00    000134555          888899999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +.+|+| .|+|.|.|...+  ..+..+.|.|..++
T Consensus        85 ~~~D~G-~Y~C~~~~~~~~--~~~~~~~l~V~~~p  116 (231)
T 2pet_A           85 QVGDER-DYVCVVRAGAAG--TAEATARLNVFAKP  116 (231)
T ss_dssp             CGGGCE-EEEEEEECGGGC--EEEEEEEEEEEBCC
T ss_pred             CcccCc-eEEEEEEecCCC--ceEEEEEEEEEecC
Confidence            999995 999999998633  24567788888664

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.36  E-value=4.1e-12  Score=82.19  Aligned_cols=87  Identities=22%  Similarity=0.252  Sum_probs=62.2

Q ss_pred             ceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCee-eeee-------ee--ccCCcEEEc-cCCcEEEeecCCCCCCee
Q psy9140          15 GNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVS-EARS-------II--HSGGRYSIT-TAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~-~~~~-------~~--~~~~r~~v~-~~G~L~I~~v~~~D~gg~   82 (114)
                      ....+.+|++|.|+|.. .+...+  .+.|+|+... +...       ..  .-.+||.+. .++.|.|+|++.+|+| .
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~~~~~--~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG-~   87 (110)
T 2ptt_A           11 PDINAYTGSNVTLKIHKDPLGPYR--RITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKG-T   87 (110)
T ss_dssp             CSEEEETTSCEEECSCSSCCCSCS--EEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCE-E
T ss_pred             CCEEEecCCcEEEeCCccCCCCcC--EEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCe-E
Confidence            45689999999999998 443222  8999995332 2110       00  112699887 5789999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.|.+.+...    .+...+|.|.+|
T Consensus        88 Y~C~v~~~~~----~~~~~~L~V~dp  109 (110)
T 2ptt_A           88 YYMRVLRETE----NELKITLEVFDP  109 (110)
T ss_dssp             EEEEEESSSB----CCEEEEEEEECC
T ss_pred             EEEEEEcCCC----cEEEEEEEEEcc
Confidence            9999987532    233788988876

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.36  E-value=2.5e-12  Score=82.03  Aligned_cols=88  Identities=17%  Similarity=0.233  Sum_probs=58.8

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCee-------eeee-----eeccCCcEEEcc-----CCcEEEeecCC
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVS-------EARS-----IIHSGGRYSITT-----AGALHIRDTGM   76 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~-------~~~~-----~~~~~~r~~v~~-----~G~L~I~~v~~   76 (114)
                      ++..+.+|.+|.|+|.+.+...+.. .+.|.|++..       +++.     .....+||.+..     +++|.|++++.
T Consensus         2 ~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   81 (109)
T 2oyp_A            2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTL   81 (109)
T ss_dssp             EEEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCG
T ss_pred             CCEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCC
Confidence            3567889999999999855332222 5899996531       1111     112367888753     36899999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|+| .|.|.+.|..+.   .+..+.|.|.
T Consensus        82 ~D~G-~Y~C~v~~~~~~---~~~~~~l~V~  107 (109)
T 2oyp_A           82 DDHG-TYCCRIQFPGLM---NDKKLELKLD  107 (109)
T ss_dssp             GGCE-EEEEEECCSSTT---CCEEEEEEEE
T ss_pred             hhCe-EEEEEEEcCCcc---cceEEEEEEE
Confidence            9995 999999987432   1224555553

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.36  E-value=2.4e-12  Score=88.55  Aligned_cols=84  Identities=21%  Similarity=0.220  Sum_probs=66.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+.+.|.+..+.+|+++.|.|.+.+.+.+. .+.|+|++..+     .       ..++.|.|.+++.+|+| .|+|.+
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~-~~~W~~~~~~~-----~-------~~~~~L~i~~~~~~d~G-~Y~C~~   73 (175)
T 1fnl_A            8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLI-----S-------SQASSYFIDAATVNDSG-EYRCQT   73 (175)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTTBC-CCEEEETTEEE-----E-------SSCSEEEESSCCGGGCE-EEEEEC
T ss_pred             CEEEEcCCceeeeCCCcEEEEeeCCCCCCCc-ceEEEECCEEc-----c-------CCceEEEEeCCCcccCE-EEEEEe
Confidence            4577889888999999999999997754332 58999998853     1       13679999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEecccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .|..     .+...+|.|..+..
T Consensus        74 ~n~~-----~s~~~~l~V~~~~~   91 (175)
T 1fnl_A           74 NLST-----LSDPVQLEVHIGWL   91 (175)
T ss_dssp             SSSC-----CCCCEEEEEECSSE
T ss_pred             eCCc-----ccccEEEEEeCCCc
Confidence            9842     36688888885543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.36  E-value=2.7e-12  Score=89.23  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+.+.|+. .|.+|+++.|.|.+.+ ..+  .+.|+|++..            ....++.|.|.+++.+|+| .|+|.|
T Consensus         9 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~--~~~W~k~g~~------------~~~~~~~L~i~~v~~~D~G-~Y~C~a   71 (184)
T 2gi7_A            9 PSLQALPSS-LVPLEKPVTLRCQGPP-GVD--LYRLEKLSSS------------RYQDQAVLFIPAMKRSLAG-RYRCSY   71 (184)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECST-TCS--EEEEEETTTC------------CEESSSEEEESSCCGGGCE-EEEEEE
T ss_pred             CeEEeCCCc-cccCCCcEEEEEeCCC-CCC--EEEEEECCcc------------ccCcccEEEECcCChhhCc-eEEEEE
Confidence            346777764 8999999999999865 222  8999999862            1235789999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|..+ ....|....|.|.+
T Consensus        72 ~n~~g-~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           72 QNGSL-WSLPSDQLELVATG   90 (184)
T ss_dssp             EETTE-EBCCCCCEEEEEES
T ss_pred             EcCCC-ccCCCCCEEEEecC
Confidence            99753 12346678888854

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.36  E-value=4.2e-12  Score=95.94  Aligned_cols=89  Identities=24%  Similarity=0.347  Sum_probs=70.3

Q ss_pred             eccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          12 INTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..+.+..+.+|+++.|.|.+ .+.+.+  .+.|+|++..    ....+.|+.+..+|.|.|.+++.+|.+|.|+|.|.|.
T Consensus       121 ~~~~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~~~~----~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~  194 (404)
T 3p3y_A          121 ENLDPVVVQEGAPLTLQCNPPPGLPSP--VIFWMSSSME----PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFH  194 (404)
T ss_dssp             CCCCCEEEETTSCEEECCCCCCCSSCC--EEEEECTTSC----BCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECT
T ss_pred             CCCCCeEEccCCcEEEEeCCCCCCCCC--eEEEeCCCcc----ccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEec
Confidence            44556789999999999998 444333  8999999864    3356789999999999999999999535999999998


Q ss_pred             cCCcEEeCCCeEEEEe
Q psy9140          91 LTGERKISPPSQVMVS  106 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~  106 (114)
                      .+.....+....|.|.
T Consensus       195 ~~~~~~~~~~~~l~v~  210 (404)
T 3p3y_A          195 FTHTIQQKNPFTLKVL  210 (404)
T ss_dssp             TTCCEEECCCBCEEEE
T ss_pred             cccceeccCceeEEEe
Confidence            8765555666677775

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.36  E-value=3.5e-12  Score=92.59  Aligned_cols=90  Identities=24%  Similarity=0.333  Sum_probs=71.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +|...+++..+.+|.++.|.|.+.+.  +.. .++|++.+..    .+..+.||.+.+++.|.|.+++.+|+| .|+|.|
T Consensus        91 ~~~~~~~~~~v~~g~~v~L~C~~~~~--~~~~~v~W~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a  163 (289)
T 3ejj_X           91 SWNLLAQEVTVVEGQEAVLPCLITDP--ALKDSVSLMREGGR----QVLRKTVYFFSPWRGFIIRKAKVLDSN-TYVCKT  163 (289)
T ss_dssp             SEEESCSEEEEETTSCEEECEEESCG--GGGGSEEEEEGGGE----ECCTTCCEEEETTTEEEESSCCGGGCE-EEEEEE
T ss_pred             ceecccceEEEecCCceEeEEEccCC--CcceEEEEEecCCe----ecCCCccEEECCCCCEEEeecccccCE-EEEEEE
Confidence            37888899999999999999999763  222 4999874443    235678999999999999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|.  +....+....|.|.+
T Consensus       164 ~~~--~~~~~~~~~~l~V~~  181 (289)
T 3ejj_X          164 MVN--GRESTSTGIWLKVNR  181 (289)
T ss_dssp             EET--TEEEECCCEEEEEES
T ss_pred             EeC--CCccccccEEEEEEE
Confidence            953  233467788999983

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.36  E-value=2.1e-12  Score=94.87  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=68.7

Q ss_pred             cceeecccee--EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNT--FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~--~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      .+|+++|.+.  .|.+|.++.|.|.+ +.+.|...|+|.+.+..+        +|... ..++.|.|+||+.+|+| .|.
T Consensus         6 ~~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--------~~~~~~~~~~~L~I~~v~~~d~G-~Y~   75 (210)
T 1gsm_A            6 KPLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--------GAVQSDTGRSVLTVRNASLSAAG-TRV   75 (210)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--------CCEEEESSEEEEEECSCCGGGCE-EEE
T ss_pred             CCEEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--------CcEEecCCccEEEECccCcccCc-eEE
Confidence            4788888876  89999999999999 654432189999966421        33333 33457999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |.|.|..+   +.+..++|.|..++..
T Consensus        76 C~a~n~~~---~~~~~~~ltV~~~P~~   99 (210)
T 1gsm_A           76 CVGSCGGR---TFQHTVQLLVYAFPNQ   99 (210)
T ss_dssp             EEEEETTE---EEEEEEEEEEEBCCSE
T ss_pred             EEEEeCCC---ceEEEEEEEEEecCCC
Confidence            99999643   3556889999877653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.36  E-value=4.1e-12  Score=92.97  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=68.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eee---------eeccCCcEEEccC-----CcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARS---------IIHSGGRYSITTA-----GALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~---------~~~~~~r~~v~~~-----G~L~I   71 (114)
                      ..+|++..|.+|.+|.|.|.+.+.+.+...+.|+|++  ..+   +..         ....++||.+..+     +.|.|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL   83 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence            4568888999999999999997653211289999952  221   110         0012579988642     47999


Q ss_pred             eecCCCCCCeeeEEEEeeccCC--cEEeCCCeEEEEecccc
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTG--ERKISPPSQVMVSEIAL  110 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~~~~  110 (114)
                      .+++.+|+| .|+|.|.|..+.  ....+..+.|.|..++.
T Consensus        84 ~~v~~~DsG-~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~  123 (256)
T 1nqb_A           84 SSLTSEDSA-VYYCARYDYYGSSYFDYWGQGTTVTVSSDIE  123 (256)
T ss_dssp             CSCCGGGCE-EEEEEECCTTSSSSCSEECCCEEEEECCCCC
T ss_pred             CcCChhhCE-EEEEEEeeccCccceeEEcCceeeeeccccc
Confidence            999999995 999999997541  12234567888876544

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.36  E-value=5.8e-12  Score=82.25  Aligned_cols=95  Identities=22%  Similarity=0.300  Sum_probs=64.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeeeeccCCcEEEc-----cCCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSIT-----TAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~~~~~~r~~v~-----~~G~L~I~~v~~~D~gg~   82 (114)
                      +...|++..+.+|++|.|.|.+.+...+...+.|+|+.  .... ..+..++||.+.     .+..|.|++++.+|+| .
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG-~   80 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNE-KTISIGGRYDETVDKGSKSFSLRISDLRVEDSG-T   80 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCC-EECCSBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             eEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCce-EeeEeCCCEEEEEeCCCCEEEEEECCCChhcCE-E
Confidence            34568889999999999999985432111279999963  2110 012346799763     1347999999999995 9


Q ss_pred             eEEEEeeccC---C----cEEeCCCeEEEEe
Q psy9140          83 YYCQTTHKLT---G----ERKISPPSQVMVS  106 (114)
Q Consensus        83 Y~C~a~n~l~---~----~~~~s~~a~L~V~  106 (114)
                      |.|.+.|..+   .    ...-...++|.|+
T Consensus        81 Y~C~~~~~~~~~~~~~~~~~~fg~GT~l~V~  111 (111)
T 2ywz_A           81 YKCQADYSPSCYSYPSLESAVEGAGTVLTVK  111 (111)
T ss_dssp             EEEEEEECTTTTCSSSCCEEEECCCEEEEEC
T ss_pred             EEEEEEcCCccceecCchheEEcCceEEEeC
Confidence            9999998332   1    2334557777774

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.35  E-value=7e-12  Score=89.97  Aligned_cols=92  Identities=22%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCeeeeeee-------eccCCcEEEccC---CcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVSEARSI-------IHSGGRYSITTA---GALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~~~~~~-------~~~~~r~~v~~~---G~L~I~~v~~~   77 (114)
                      +...|.+..+.+|.+|.|.|.+.+.+.+  .+.|+|  ++..+....       ....+||.+..+   +.|.|.+++.+
T Consensus       138 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  215 (247)
T 2ghw_B          138 LTQSPATLSLSPGERATLSCRASQSVRS--NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPE  215 (247)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGG
T ss_pred             EEccCCEEEecCCCcEEEEEEeCCCccc--eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHH
Confidence            4556778889999999999999776444  799999  555321100       122578987643   35999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|+|.|.|.  +....+..++|.|+
T Consensus       216 D~G-~Y~C~a~~~--~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          216 DFA-VYYCQQRSN--WPPTFGQGTKVEVK  241 (247)
T ss_dssp             GCE-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             HCE-EEEEEEccC--CCceEcCCEEEEEC
Confidence            995 999999985  34456778999997

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.35  E-value=3.7e-12  Score=89.45  Aligned_cols=89  Identities=21%  Similarity=0.240  Sum_probs=64.1

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeC-Ceeeeee-------eeccC--CcEEE-ccCCcEEEeecCCCCCCee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE-GVSEARS-------IIHSG--GRYSI-TTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd-~~~~~~~-------~~~~~--~r~~v-~~~G~L~I~~v~~~D~gg~   82 (114)
                      ++...+.+|++|.|+|.+.+ ..+...|.|+|+ +..+...       .....  +|+.+ ..+|+|.|++++.+|+| .
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~-~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G-~   83 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHP-LASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRG-D   83 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSC-CCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCE-E
T ss_pred             cceEEEEeCCCEEEeCCCCC-CCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCe-E
Confidence            45678999999999999743 122228999995 4332210       01122  79999 68999999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |+|.+.+..    ..+....|.|.++
T Consensus        84 Y~C~v~~~~----~~~~~~~L~V~~~  105 (180)
T 2dru_A           84 YYMRMLHET----EDQWKITMEVYEM  105 (180)
T ss_dssp             EEEEEESSS----EEEEEEEEEEECC
T ss_pred             EEEEEEcCC----eEEEEEEEEEECC
Confidence            999998753    3455778888765

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.35  E-value=3.4e-12  Score=82.88  Aligned_cols=95  Identities=24%  Similarity=0.343  Sum_probs=64.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeeeeccCCcEEEc-----cCCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSIT-----TAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~~~~~~r~~v~-----~~G~L~I~~v~~~D~gg~   82 (114)
                      +...|.+..+.+|.+|.|.|.+.+...+...+.|+|+.  .... .....++||.+.     .+..|.|++++.+|+| .
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG-~   80 (108)
T 2coq_A            3 VDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKE-QTISIGGRYSETVDEGSNSASLTIRDLRVEDSG-T   80 (108)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCE-EECCCBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             eEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcE-EEEEeCCceEEEEcCCCCEEEEEECCCCcccCE-E
Confidence            34568889999999999999985532111279999973  2110 012346899863     2347999999999995 9


Q ss_pred             eEEEEeeccC--C--cEEeCCCeEEEEe
Q psy9140          83 YYCQTTHKLT--G--ERKISPPSQVMVS  106 (114)
Q Consensus        83 Y~C~a~n~l~--~--~~~~s~~a~L~V~  106 (114)
                      |.|.+.|..+  .  ...-...++|.|+
T Consensus        81 Y~C~~~~~~~~~~~~~~~fg~GT~l~V~  108 (108)
T 2coq_A           81 YKCKAYRRCAFNTGVGYKEGAGTVLTVK  108 (108)
T ss_dssp             EEEEEEEEESSCSCSCCEECCCEEEEEC
T ss_pred             EEEEEEeCCCCCCCceeeeCCcEEEEeC
Confidence            9999998321  1  2234557778774

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.35  E-value=9.3e-13  Score=97.11  Aligned_cols=92  Identities=14%  Similarity=0.113  Sum_probs=63.6

Q ss_pred             ceeeccce-eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeee-ccCCcEEEcc---------CCcEEEeecCCC
Q psy9140           9 DYEINTGN-TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSII-HSGGRYSITT---------AGALHIRDTGME   77 (114)
Q Consensus         9 ~~~v~~~d-~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~-~~~~r~~v~~---------~G~L~I~~v~~~   77 (114)
                      .+...+.+ ..+.+|.++.|.|.+.+.+.+  .+.|+||+..+..... ..+.++.+..         .+.|.|.+++.+
T Consensus       210 ~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p--~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  287 (315)
T 1itb_B          210 VIVSPANETMEVDLGSQIQLICNVTGQLSD--IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR  287 (315)
T ss_dssp             EECSCCSEEEECCSSSCEEEEEEEEECTTS--EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             EEecCCCCcEEEeCCCcEEEEEEEecCCCC--eeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHH
Confidence            34444444 478999999999999776554  7999999986521100 0012333321         238999999999


Q ss_pred             C-CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 D-SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D-~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      | +| .|+|.|.|.++.   .+..+.|.|+
T Consensus       288 d~~G-~Y~C~a~N~~G~---~~~~~~l~v~  313 (315)
T 1itb_B          288 FYKH-PFTCFAKNTHGI---DAAYIQLIYP  313 (315)
T ss_dssp             GGTS-CEEEEEECTTCC---EEEEEEEECC
T ss_pred             HcCC-ceEEEEecCCCc---eeEEEEEEec
Confidence            9 95 999999999875   3456677665

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.35  E-value=1.7e-12  Score=96.46  Aligned_cols=89  Identities=15%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEee----CCeeeeeeeeccCCcEEEccCC----------cEEEeecCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR----EGVSEARSIIHSGGRYSITTAG----------ALHIRDTGMED   78 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k----d~~~~~~~~~~~~~r~~v~~~G----------~L~I~~v~~~D   78 (114)
                      .|.+..+.+|.++.|.|.+.+++.+  .++|+|    ++..+   ......++.+..++          .|.|.+++.+|
T Consensus       228 ~~~~~~~~~G~~v~l~C~~~g~p~p--~v~W~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  302 (334)
T 1ry7_B          228 LPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKV---GPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED  302 (334)
T ss_dssp             CSCCEEEESSCCEEECCCCBCSSCE--EEEEEECCCGGGCSB---CTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTS
T ss_pred             CCCceEEeCCCCEEEEEEEecCCCC--eEEEEECCcCCCccc---cCCCCeeEEEeecCccccccccccEEEEccCCHHH
Confidence            3578889999999999999775444  899999    55532   11112223333322          79999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      +| .|+|.|.|.++.   .+..+.|.|.+...
T Consensus       303 ~G-~Y~C~a~N~~G~---~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          303 AG-EYTCLAGNSIGF---SHHSAWLVVLPAEE  330 (334)
T ss_dssp             CS-EEEEEEEESSCC---EEEEEEEEEECSCC
T ss_pred             CE-EEEEEEeCCCCe---EEEEEEEEEEECCC
Confidence            96 999999999875   45578999987654

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.35  E-value=5.1e-12  Score=83.92  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee----eccCCcEEEcc---CCcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI----IHSGGRYSITT---AGALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~----~~~~~r~~v~~---~G~L~I~~v~~~   77 (114)
                      +...|++..+.+|.+|.|.|.+.+.+.+  .+.|+|..  ..   ++...    ....+||.+..   +..|.|++++.+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   81 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRASENIYS--YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE   81 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEecCCeEEEcCCCcEEEEEEeCCCCCc--eEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHH
Confidence            3456888999999999999998654322  78999953  21   11100    01257998863   347999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |+| .|.|.+.|... .......++|.|..+.
T Consensus        82 DsG-~Y~C~~~~~~~-~~~fg~gt~L~V~~~~  111 (120)
T 1mqk_L           82 DFG-SYYCQHHYGTP-PLTFGGGTKLEIKREQ  111 (120)
T ss_dssp             GCE-EEEEEECSSSS-SCCBCCCEEEEEC---
T ss_pred             HCE-EEEEEEEeCCC-ceEECCCeEEEEecCC
Confidence            995 99999998520 2234668899998653

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.35  E-value=1.6e-12  Score=97.44  Aligned_cols=90  Identities=16%  Similarity=0.073  Sum_probs=65.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCC--CCcceEEEeeCCeeeeeeeeccCCcEEEc-------cCCcEEEeecCCCCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYN--HNLLLIAWLREGVSEARSIIHSGGRYSIT-------TAGALHIRDTGMEDSY   80 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~--~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-------~~G~L~I~~v~~~D~g   80 (114)
                      ..+.|++..+.+|.++.|.|.+.+.+  .+++.+.|+|++..++    ..+.+....       .++.|.|.+|+.+|+|
T Consensus       231 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~----~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  306 (329)
T 3oq3_B          231 KLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWII----GLDFGVYSILTSSGGITEATLYFENVTEEYIG  306 (329)
T ss_dssp             EEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBC----CBCSSEEEEEEEETTEEEEEEEESSCCGGGTT
T ss_pred             ceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeee----ccCCceeeeecccCceeEeEEEEEeccHHHCC
Confidence            33477888999999999999997764  2222789999998642    222332222       4678999999999993


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +.|+|.|.|.++.   .+..++|.|+
T Consensus       307 ~~Y~C~a~N~~G~---~~~~~~l~v~  329 (329)
T 3oq3_B          307 NTYTCRGHNYYFD---KTLTTTVVLE  329 (329)
T ss_dssp             CEEEEEEECSSCE---EEEEEEEEEC
T ss_pred             CcEEEEEEecCCc---eEEEEEEEeC
Confidence            3999999999864   3445677663

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.35  E-value=7e-12  Score=83.27  Aligned_cols=95  Identities=15%  Similarity=0.172  Sum_probs=67.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee----eccCCcEEEcc---CCcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI----IHSGGRYSITT---AGALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~---~G~L~I~~v~~~   77 (114)
                      ....|++..+.+|.+|.|.|.+.+...+  .+.|+|..  .   .++...    ....+||.+..   +..|.|.+++.+
T Consensus         6 v~q~p~~v~v~~G~~vtL~C~~~~~~~~--~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (119)
T 2e27_L            6 MTQSPSSLSASLGGKVTITCKANQDIKK--KIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPE   83 (119)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGG
T ss_pred             eEecCCeEEEeCCCCEEEEEEeCCCCCc--eEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChH
Confidence            4456888899999999999998654333  78999953  1   121100    01257998854   337999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |+| .|.|.+.|.  +...-...++|.|.+..
T Consensus        84 DsG-~Y~C~~~~~--~~~~fg~GT~l~v~~~~  112 (119)
T 2e27_L           84 DAA-TYYCLQYDN--FTWTFGGGTKLEIKRAA  112 (119)
T ss_dssp             GCE-EEEEEECGG--GCCEECCCEEEEEEC--
T ss_pred             HCE-EEEEEEccC--CceEECCCEEEEEeCCC
Confidence            995 999999986  23345668899998643

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.35  E-value=4.8e-12  Score=89.89  Aligned_cols=83  Identities=19%  Similarity=0.324  Sum_probs=56.0

Q ss_pred             ceee-ccce-eEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeee------------eccCCcEEEcc------CC
Q psy9140           9 DYEI-NTGN-TFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSI------------IHSGGRYSITT------AG   67 (114)
Q Consensus         9 ~~~v-~~~d-~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~------------~~~~~r~~v~~------~G   67 (114)
                      +|.| .|.+ ..|.+|++|+|.|.+.+...+.. .|.|+|++.......            ..-.+|+....      ++
T Consensus         4 Qf~V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~   83 (226)
T 4f80_A            4 QFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKA   83 (226)
T ss_dssp             CCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEE
T ss_pred             eEEEECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeE
Confidence            5665 4555 57899999999999854333333 799999875321100            01123554432      34


Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .|.|.+|+.+|+| .|+|.|.|..+
T Consensus        84 ~L~I~~v~~~D~G-~Y~C~a~n~~~  107 (226)
T 4f80_A           84 ALRIHNVTASDSG-KYLCYFQDGDF  107 (226)
T ss_dssp             EEEESSCCGGGCE-EEEEEEEETTE
T ss_pred             EEEEeeCchHHCe-eEEEEEECCCc
Confidence            7999999999995 99999999643

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.35  E-value=2.6e-12  Score=90.17  Aligned_cols=90  Identities=21%  Similarity=0.301  Sum_probs=64.6

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeee-------eccCCcEEEccCC---cEEEeecCCCCCCe
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSI-------IHSGGRYSITTAG---ALHIRDTGMEDSYI   81 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~~~D~gg   81 (114)
                      |++..+.+|++|.|.|.+.+.+.+  .+.|+|++  ..+....       ....+||.+..++   .|.|.+++.+|+| 
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G-   82 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKN--FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA-   82 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGS--CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS-
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCC--eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCE-
Confidence            888999999999999998664433  78999853  2211000       0125799886433   7999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|+|.|.|...+....+..+.|.|.
T Consensus        83 ~Y~C~~~n~~~~~~~~~~~~~l~V~  107 (212)
T 1nfd_E           83 AYYCLSSYGDNNDLVFGSGTQLTVL  107 (212)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEE
T ss_pred             EEEEEEEcccCcccccCCceEEEEc
Confidence            9999999843344345667788884

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.35  E-value=2.2e-12  Score=88.82  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=64.1

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .+.+..+.+|+++.|.|.+.+.+.+  .+.|++++..+            ...++.|.|.+++.+|+| .|+|.|.|..+
T Consensus       103 ~~~~~~v~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~------------~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~~  167 (184)
T 2ny1_B          103 ANSDTHLLQGQSLTLTLESPPGSSP--SVQCRSPRGKN------------IQGGKTLSVSQLELQDSG-TWTCTVLQNQK  167 (184)
T ss_dssp             ESSCSEEETTCCEEEEEECCTTCCC--EEEEECTTSCE------------EEESSEEEESSCCGGGCE-EEEEEEEETTE
T ss_pred             CCCCceeecCCCEEEEEEcCCCCCC--EEEEEeCCCcc------------ccCceEEEEecCCcCCCe-EEEEEEEECCc
Confidence            4667789999999999999775433  89999997642            234789999999999995 99999999643


Q ss_pred             CcEEeCCCeEEEEecccc
Q psy9140          93 GERKISPPSQVMVSEIAL  110 (114)
Q Consensus        93 ~~~~~s~~a~L~V~~~~~  110 (114)
                         ..+..+.|.|.+.++
T Consensus       168 ---~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          168 ---KVEFKIDIVVLAFQK  182 (184)
T ss_dssp             ---EEEEEEEEEEECCCC
T ss_pred             ---eEEEEEEEEEEecCC
Confidence               356688999987654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.35  E-value=7e-12  Score=88.75  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeee----eeccCCcEEEc---cCCcEEEeecCC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARS----IIHSGGRYSIT---TAGALHIRDTGM   76 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~----~~~~~~r~~v~---~~G~L~I~~v~~   76 (114)
                      .+...|++..+.+|++|.|.|.+.+.+.+  .+.|+|++  ..   +++.    ....++||.+.   .++.|.|++|+.
T Consensus        26 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           26 QMTQSPSSLSASVGDRVTITCRASQDVST--AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEeCCCeEEEeCCCcEEEEEecCCCCCc--eEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            35566888999999999999999765322  89999843  11   1100    01235799886   345799999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|+| .|+|.+.|..+.  ..+..+.|.|..
T Consensus       104 ~D~G-~Y~C~~~~~~~~--~~~~~~~l~V~~  131 (237)
T 3sob_L          104 EDFA-TYYCQQSYTTPP--TFGQGTKVEIKR  131 (237)
T ss_dssp             GGCE-EEEEEECSSSSC--EECCCEEEEEEC
T ss_pred             hhCe-EEEEeeccCCce--EEcCcEEEEEec
Confidence            9995 999999986432  345577888854

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.35  E-value=3.1e-12  Score=89.21  Aligned_cols=87  Identities=13%  Similarity=0.115  Sum_probs=64.2

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee---e----ccCCcEEEc-cCCcEEEeecCCCCCCeeeEE
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI---I----HSGGRYSIT-TAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~---~----~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ++...+.+|++|+|+|.+.+   +...|.|+|++..+....   .    .-.+|+.+. .+|+|.|++++.+|+| .|+|
T Consensus         2 ~~~v~~~~G~~VtL~c~~~~---~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG-~Y~C   77 (171)
T 1ccz_A            2 SQQIYGVVYGNVTFHVPSNV---PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED-EYEM   77 (171)
T ss_dssp             EEEEEEETTCCEEECCCCSS---CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCE-EEEE
T ss_pred             ccEEEEEcCCCEEEcCCCCC---CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCc-eEEE
Confidence            45678999999999998832   212899999987542110   0    123577775 6899999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEeccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|.|..+     +....|.|.++.
T Consensus        78 ~~~n~~~-----~~~~~L~V~~~~   96 (171)
T 1ccz_A           78 ESPNITD-----TMKFFLYVLEMV   96 (171)
T ss_dssp             ECTTCCS-----CEEEEEEEECCC
T ss_pred             EEeCCCC-----cEEEEEEEECcC
Confidence            9998743     446788887653

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.34  E-value=5.2e-12  Score=90.99  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=68.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCC---cceEEEeeCC--eee---ee----eeeccCCcEEEccCC---cEEEe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHN---LLLIAWLREG--VSE---AR----SIIHSGGRYSITTAG---ALHIR   72 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~---~~~vsW~kd~--~~~---~~----~~~~~~~r~~v~~~G---~L~I~   72 (114)
                      +.+...|.+..+.+|++|.|.|.+.+.+..   ...+.|+|++  ..+   ++    ......+||.+..++   .|.|.
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  118 (254)
T 2c1o_A           39 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKIS  118 (254)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEEC
Confidence            345666889999999999999999765421   1279999853  211   00    011124799887544   79999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +++.+|+| .|+|.|.|....  ..+..+.|.|..
T Consensus       119 ~v~~~D~G-~Y~C~a~n~~~~--~~~~~~~l~V~~  150 (254)
T 2c1o_A          119 RVEAEDLG-IYYCVQGSHFPP--TFGAGTKLELKR  150 (254)
T ss_dssp             SCCGGGCS-EEEEEECSSSSC--EEBCCEEEEECC
T ss_pred             cCCcccCE-EEEEEEEcCcce--EecCCEEEEECC
Confidence            99999995 999999997432  345566788864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.34  E-value=2.5e-12  Score=88.37  Aligned_cols=83  Identities=23%  Similarity=0.308  Sum_probs=65.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+.+.|.+..+.+|+++.|.|.+.+.+.+. .++|+|++..+     ..       .++.|.|.+++.+|+| .|+|.+
T Consensus         5 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~-----~~-------~~~~L~i~~v~~~d~G-~Y~C~~   70 (176)
T 1f2q_A            5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLS-----EE-------TNSSLNIVNAKFEDSG-EYKCQH   70 (176)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC-----CCEEEETTEEC-----SC-------CSSEEEECSCCGGGCE-EEEEEC
T ss_pred             CEEEcCCCCcceecCCcEEEEEeCCCCCCcc-eEEEEECCeEC-----CC-------CceEEEEeccceecCE-EEEEEc
Confidence            5578899999999999999999997754321 68999999853     11       2689999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|..     .+....|.|..+.
T Consensus        71 ~~~~-----~s~~~~l~V~~~~   87 (176)
T 1f2q_A           71 QQVN-----ESEPVYLEVFSDW   87 (176)
T ss_dssp             TTSS-----CCCCEEEEEECSS
T ss_pred             CCcc-----ccccEEEEEeCcc
Confidence            9853     3667888888544

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.34  E-value=2.3e-12  Score=96.66  Aligned_cols=85  Identities=24%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec--cCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK--LTG   93 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~--l~~   93 (114)
                      ..+.+|.++.|.|.+.+.+ .+  .++|+|++..+    ...+.||... ++.|.|.+++.+|+| .|+|.|.|.  +++
T Consensus       138 ~~~~~G~~v~L~C~~~g~p~~~--~i~W~k~~~~l----~~~~~~~~~~-~~~L~I~~v~~~D~G-~Y~C~a~n~~~~g~  209 (329)
T 3oq3_B          138 LGTHDKYGIDLYCGILYAKHYN--NITWYKNNQEL----IIDGTKYSQS-GQNLIIHNPELEDSG-RYDCYVHYDDVRIK  209 (329)
T ss_dssp             TTSSTTTCEEEECCCCSCCCCC--EEEEEETTEEC----CCSSSSEEEE-TTEEEECSCCGGGCE-EEEEEEEECCTTSS
T ss_pred             eEEeCCCcEEEEeccCCCCCCc--eEEEEECCccC----CCCCceEecC-CCEEEEeecChhhCE-EEEEEEEecccCCC
Confidence            3466799999999998765 33  89999999864    2356788877 799999999999995 999999997  654


Q ss_pred             cE-EeCCCeEEEEeccc
Q psy9140          94 ER-KISPPSQVMVSEIA  109 (114)
Q Consensus        94 ~~-~~s~~a~L~V~~~~  109 (114)
                      .. ..+..+.|.|.+++
T Consensus       210 ~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          210 NDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             SCEEEEEEEEEEEECCC
T ss_pred             ceeEEEeeEEEEEECCC
Confidence            32 22335788888665

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.34  E-value=9.6e-12  Score=87.18  Aligned_cols=94  Identities=17%  Similarity=0.186  Sum_probs=65.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCC---ee--eeee--------eeccCCcEEEcc---CCcEEEe
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREG---VS--EARS--------IIHSGGRYSITT---AGALHIR   72 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~---~~--~~~~--------~~~~~~r~~v~~---~G~L~I~   72 (114)
                      +...| +..|.+|.+|.|.|.+.+. +.+  .+.|+|++   ..  ++..        .....+||.+..   ++.|.|.
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTY--TIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTC--CEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCc--EEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            34445 8899999999999999765 222  89999932   11  1000        001125888754   3469999


Q ss_pred             ecCCCCCCeeeEEEEeeccCC--cEEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTG--ERKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|+|.|.|..+.  ....+..+.|.|..
T Consensus        81 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  116 (218)
T 3s96_B           81 NIQPEDEA-IYICGVGDTIKEQFVYVFGGGTKVTVLG  116 (218)
T ss_dssp             SCCGGGCE-EEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             cCCcccCE-EEEEEEecCCCCceeEEEcCcEEEEEec
Confidence            99999995 999999997641  22456678999984

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.34  E-value=4.4e-12  Score=91.23  Aligned_cols=97  Identities=18%  Similarity=0.170  Sum_probs=67.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCC---CcceEEEeeCC--eeeeeee-------eccCCcEEEccCC---cEEEee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNH---NLLLIAWLREG--VSEARSI-------IHSGGRYSITTAG---ALHIRD   73 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~---~~~~vsW~kd~--~~~~~~~-------~~~~~r~~v~~~G---~L~I~~   73 (114)
                      .+...|++..+.+|++|.|.|.+.+.+.   ....+.|+|++  ..+....       ....+||.+..++   .|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            3556788999999999999999966541   01279999953  2110000       0125799886533   799999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      ++.+|+| .|.|.|.|....  ..+..+.|.|..+
T Consensus        83 v~~~D~G-~Y~C~~~n~~~~--~~~~~~~l~V~~~  114 (247)
T 1svz_A           83 VEAEDLG-IYYCFQGSHFPP--TFGGGTKLEIKGG  114 (247)
T ss_dssp             CCGGGCE-EEEEEECSSSSC--EECCCEEEEEC--
T ss_pred             CCHHHCE-EEEEEEccCCcc--EECCCEEEEEECC
Confidence            9999995 999999997432  3455788988875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.34  E-value=5.3e-12  Score=92.21  Aligned_cols=85  Identities=12%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEE-eeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCe-eeEEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAW-LREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYI-RYYCQTTH   89 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW-~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg-~Y~C~a~n   89 (114)
                      +.+.+..+.+|.++.|.|.+.+ +. .+.++| .+|+..     +..+.||.+.+++.|.|.+++.+|+ | .|+|.|.|
T Consensus        96 ~~~~~~~~~~g~~v~l~C~~~~-p~-~~~v~W~~~~g~~-----l~~~~~~~~~~~~~L~i~~v~~~d~-G~~Y~C~a~n  167 (290)
T 2o26_X           96 LVGLPLFGKEDSDALVRCPLTD-PQ-VSQYSLIECDGKS-----LPTDLTFVPNPKAGITIKNVKRAYH-RLCVRCAAQR  167 (290)
T ss_dssp             CCCCCEEEETTSCEEECCCBSC-CS-CEEEEEEETTSCC-----CCTTCEEEEETTTEEEEESCCGGGT-TCEEEEEEEE
T ss_pred             ccccceEEecCCeEEEeCcCCC-CC-CceEEEEeCCCcC-----CCCCCceeeCCCCCEEEecccHHHC-CCEEEEEEEE
Confidence            6777889999999999999974 22 128999 567764     3457899998899999999999999 8 99999999


Q ss_pred             ccCCcEEeCCCeEEEEe
Q psy9140          90 KLTGERKISPPSQVMVS  106 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~  106 (114)
                      .  +....+....|.|.
T Consensus       168 ~--~~~~~s~~~~l~V~  182 (290)
T 2o26_X          168 D--GTWLHSDKFTLKVR  182 (290)
T ss_dssp             T--TEEEECCCEEEEEE
T ss_pred             C--CceEEeEEEEEEEE
Confidence            7  33345668899887

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.34  E-value=5e-12  Score=90.35  Aligned_cols=83  Identities=17%  Similarity=0.261  Sum_probs=66.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.|.+.|.+..+.+|+++.|.|.+.+.+.+. .++|+|++..+     ..       .++.|.|.+++.+|+| .|+|.|
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~-~~~W~~~g~~~-----~~-------~~~~l~i~~~~~~d~G-~Y~C~~   67 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSS-STQWFLNGTAT-----QT-------STPSYRITSASVNDSG-EYRCQR   67 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTT-CEEEEETTEEC-----SC-------CSSEEEESSCCGGGCE-EEEEEE
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCc-eEEEEECCEEe-----ec-------cCCeEEEecCCcccCe-EEEEEE
Confidence            5688999999999999999999997654331 79999999853     11       1678999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|..     .+....|.|..+.
T Consensus        68 ~~~~-----~s~~~~l~v~~~~   84 (262)
T 3rjd_A           68 GLSG-----RSDPIQLEIHRGW   84 (262)
T ss_dssp             SSSC-----CCCCEEEEEECSS
T ss_pred             ecCC-----ccccEEEEEeccc
Confidence            9853     3557888887654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.34  E-value=5e-12  Score=86.36  Aligned_cols=84  Identities=13%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+...|.+..+.+|.++.|.|.+.+++.+. .++|+|++..+.     . ...   .++.|.|.++  +|+ |.|+|.|
T Consensus        99 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~~~~~-----~-~~~---~~~~L~i~~~--~d~-G~Y~C~a  165 (182)
T 1rhf_A           99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV-TIVWWRGTTKIG-----G-PAP---SPSVLNVTGV--TQS-TMFSCEA  165 (182)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCC-EEEEEETTEECS-----C-SEE---SSEEEEECCC--SSC-EEEEEEE
T ss_pred             CeEEecCcceEecCCCEEEEEeEecCCCCCC-EEEEEcCCeECC-----C-CCC---CceEEEEecc--ccC-eEEEEEE
Confidence            4577888888999999999999997754331 799999998641     1 111   5789999999  588 5999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.++.  ..|..+.|.|+
T Consensus       166 ~N~~g~--~~s~~~~l~Vk  182 (182)
T 1rhf_A          166 HNLKGL--ASSRTATVHLQ  182 (182)
T ss_dssp             EETTEE--EECCCEEEEEC
T ss_pred             ECCCCC--cccceEEEEeC
Confidence            999764  24558888875

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.33  E-value=6.3e-12  Score=88.15  Aligned_cols=93  Identities=18%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeeeee----------eccCCcEEEccC------CcEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEARSI----------IHSGGRYSITTA------GALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~~~----------~~~~~r~~v~~~------G~L~I~~   73 (114)
                      .++...+.+|++|.|.|.+.+.+..  .. .+.|+|++..+....          ....+|+.+..+      +.|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            3455689999999999998544321  12 899999874432100          111378888654      3899999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+.+|+| .|+|.|.|  .+.  .+..+.|.|..+..
T Consensus        87 v~~~D~G-~Y~C~~~~--~~~--~~~~~~l~V~~~~~  118 (222)
T 3sbw_C           87 VKLQDAG-VYRCMISY--GGA--DYKRITVKVNAPYN  118 (222)
T ss_dssp             CCGGGCE-EEEEEEES--SSE--EEEEEEEEEEBCCC
T ss_pred             cccccCe-EEEEEEEe--CCC--ceeEEEEEEECCCC
Confidence            9999995 99999999  232  34467888886654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.33  E-value=5.8e-12  Score=90.55  Aligned_cols=94  Identities=17%  Similarity=0.230  Sum_probs=67.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeee----eeccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARS----IIHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~----~~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      +...|++..+.+|++|.|.|.+.+.+.+  .+.|+|++.     .++..    .....+||.+..++   .|.|++++.+
T Consensus         7 v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            7 LIQSTSSLSASLGDRVTISCRASQDIRN--YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             EECSCSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEecCCEEEeeCCCcEEEEEEecccCCc--eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            4456888899999999999999775544  799999641     11100    01235789876544   7999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |+| .|.|.|.|..+.  ..+..+.|.|..+
T Consensus        85 D~G-~Y~C~~~n~~~~--~~~~~~~l~V~~~  112 (250)
T 3esu_F           85 DIG-TYFCQQGNTLPW--TFGGGTKLEIRRG  112 (250)
T ss_dssp             GCE-EEEEEECSSSSC--EECCCEEEEEC--
T ss_pred             hCE-EEEEEEeeCCCc--eECCCEEEEEECC
Confidence            995 999999997543  3566778988864

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.33  E-value=7.9e-13  Score=96.94  Aligned_cols=79  Identities=11%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      .+|.-+.|.+..+.+|+++.|.|.+.+..+. ..+.|+|++..+     ..+.||.+.. ++.|.|.+++.+|+| .|+|
T Consensus         6 ~~P~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C   78 (317)
T 2y25_A            6 TGPHFVEYLSWEVTGECNVLLKCKVANIKKE-THIVWYKDEREI-----SVDEKHDFKDGICTLLITEFSKKDAG-IYEV   78 (317)
T ss_dssp             SCCEEEEEEEEEEETTTEEEEEEEEESCCTT-CEEEEEETTEEE-----CCSCC-----CCEEEEETTCCSTTCS-CEEE
T ss_pred             CCCcEeeeeeEEECCCCeEEEEEEEcCCCCC-CEEEEEECCeEc-----CCCCcEEEECCeEEEEEccCCcccCe-EEEE
Confidence            3443347778999999999999998654211 189999999854     4566776653 358999999999996 9999


Q ss_pred             EEeeccC
Q psy9140          86 QTTHKLT   92 (114)
Q Consensus        86 ~a~n~l~   92 (114)
                      .|.|..+
T Consensus        79 ~~~n~~g   85 (317)
T 2y25_A           79 ILKDDRG   85 (317)
T ss_dssp             EEESSSC
T ss_pred             EEECCCC
Confidence            9999765

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.33  E-value=7.5e-12  Score=92.60  Aligned_cols=100  Identities=22%  Similarity=0.264  Sum_probs=70.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee---------eccCCcEEEcc-----CCc
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI---------IHSGGRYSITT-----AGA   68 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~---------~~~~~r~~v~~-----~G~   68 (114)
                      +....+|++..+.+|++|.|.|.+.+...+...+.|+|++.  .   ++...         ...++||.+..     ++.
T Consensus        27 ~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s  106 (282)
T 1qok_A           27 QVKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAY  106 (282)
T ss_dssp             CCEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEE
T ss_pred             eEEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEE
Confidence            44567899999999999999999866431112799999641  1   11100         11257998864     257


Q ss_pred             EEEeecCCCCCCeeeEEEEeeccC--CcEEeCCCeEEEEecc
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHKLT--GERKISPPSQVMVSEI  108 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~l~--~~~~~s~~a~L~V~~~  108 (114)
                      |.|.+++.+|+| .|.|.+.|..+  .....+..++|.|..+
T Consensus       107 L~I~~v~~~DsG-~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~  147 (282)
T 1qok_A          107 LQLSSLTSEDTA-VYYCNEGTPTGPYYFDYWGQGTTVTVSSG  147 (282)
T ss_dssp             EEECSCCGGGCE-EEEEEEECSSSSCCCEEECCCEEEEEEC-
T ss_pred             EEECcCChhhCE-EEEEEeccCCCccceeeeCCCEEEEEecC
Confidence            999999999995 99999999754  1233456778998865

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.33  E-value=1.4e-11  Score=79.41  Aligned_cols=90  Identities=17%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCc--c-eEEEeeCCeeeeeeee-----------ccCCcEEEc-cCCcEEEeecCCCCCC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNL--L-LIAWLREGVSEARSII-----------HSGGRYSIT-TAGALHIRDTGMEDSY   80 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~--~-~vsW~kd~~~~~~~~~-----------~~~~r~~v~-~~G~L~I~~v~~~D~g   80 (114)
                      +..+.+|++|.|.|.+.+.+.+.  . .+.|+|++...++...           .-.+|+.+. .+++|.|+||+.+|+|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCE
Confidence            46789999999999985432221  1 5999998653211000           113577664 4689999999999995


Q ss_pred             eeeEEEEeeccCCcEEe--CCCeEEEEe
Q psy9140          81 IRYYCQTTHKLTGERKI--SPPSQVMVS  106 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~--s~~a~L~V~  106 (114)
                       .|.|.+.+..+...+.  -...+|.|.
T Consensus        83 -~Y~C~v~~~~~~~~~~~~~~~~~L~V~  109 (110)
T 1ncn_A           83 -LYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             -EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             -EEEEEEEcCCCCceEEEEEEEEEEEEe
Confidence             9999999876543221  115566664

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.33  E-value=4.4e-12  Score=85.97  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=65.2

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      |..++....+.+..+.+|.++.|.|.+.+... ...+.|+||+..+..          ...++.|.|.+++.+|+| .|+
T Consensus        83 v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~----------~~~~~~L~i~~v~~~d~G-~Y~  150 (170)
T 3ry4_A           83 VLFEWLVLQTPHLEFQEGETIMLRCHSWKDKP-LVKVTFFQNGKSQKF----------SHLDPTFSIPQANHSHSG-DYH  150 (170)
T ss_dssp             EECCSEEEECSCSEECTTCCEEEEEEEGGGCC-EEEEEEEETTEEEEE----------ESSCCEEEESSCCGGGCE-EEE
T ss_pred             EECCceEecCCCceeecCCeEEEEEECCCCCC-CceEEEEECCeEccc----------cCCCCeEEEEeccccCCE-EEE
Confidence            33344556666778999999999999843211 128999999986411          123678999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEe
Q psy9140          85 CQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |.|.|..+.  ..|....|.|+
T Consensus       151 C~a~n~~g~--~~s~~~~l~V~  170 (170)
T 3ry4_A          151 CTGNIGYTL--FSSKPVTITVQ  170 (170)
T ss_dssp             EEEEETTEE--EECCCEEEEEC
T ss_pred             EEEEeCcCc--cccccEEEEEC
Confidence            999998753  46778888774

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.33  E-value=3.7e-12  Score=84.38  Aligned_cols=99  Identities=18%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeee----eeee-------------------eccC--CcEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSE----ARSI-------------------IHSG--GRYSI   63 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~----~~~~-------------------~~~~--~r~~v   63 (114)
                      +...|+...+.+|.+|.|+|.+.+ ...+...+.|+|++...    ++..                   ...+  +|+.+
T Consensus         7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   86 (135)
T 1xt5_A            7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   86 (135)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred             EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence            344577889999999999999732 11121289999976431    1100                   0022  78988


Q ss_pred             cc--CCcEEEeecCCCCCCeeeEEEEeeccCC--cEEeCCCeEEEEeccc
Q psy9140          64 TT--AGALHIRDTGMEDSYIRYYCQTTHKLTG--ERKISPPSQVMVSEIA  109 (114)
Q Consensus        64 ~~--~G~L~I~~v~~~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~~~  109 (114)
                      ..  +++|.|++|+.+|+| .|.|.+.|.-..  ....+....|.|+.++
T Consensus        87 ~~~~~~sL~I~~v~~~D~G-~Y~C~v~~~~~~~~~g~~~~~~~L~V~g~~  135 (135)
T 1xt5_A           87 ANLAAPTLRLTHVHPQDGG-RYWCQVAQWSIRTEFGLDAKSVVLKVTGHT  135 (135)
T ss_dssp             SCTTSCCEEECSCCGGGCE-EEEEEEECSSCCSGGGEEEEEEEEEEETTC
T ss_pred             ecCCCCeEEECCCChhhCc-EEEEEEEcCCccccccccceeEEEEEecCC
Confidence            64  478999999999995 999999985321  0122346788887653

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.33  E-value=3.3e-12  Score=92.05  Aligned_cols=89  Identities=12%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +...| +..|.+|.++.|.|...+.+.+  .+.|+||+..+.     . .+.....++.|.|.+|+.+|+| .|+|.|.|
T Consensus       109 i~~~p-~~~v~~G~~v~L~C~~~~~~~~--~~~W~k~g~~~~-----~-~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n  178 (218)
T 1uct_A          109 LSADR-GLVLMPGENISLTCSSAHIPFD--RFSLAKEGELSL-----P-QHQSGEHPANFSLGPVDLNVSG-IYRCYGWY  178 (218)
T ss_dssp             EEESS-CSEECTTCCCEEEEECSSSCCS--EEEEEETTCSSC-----C-SEEECSSSEEEECCSCCGGGCE-EEEEEEEC
T ss_pred             EEeCC-CCccCCCCCEEEEEeCCCCCCC--EEEEEECCCccc-----c-cccCCCccCEEEEccCCcccCE-EEEEEEEc
Confidence            44555 6789999999999955332222  899999998541     1 2333445789999999999995 99999998


Q ss_pred             ccCCc--EEeCCCeEEEEecc
Q psy9140          90 KLTGE--RKISPPSQVMVSEI  108 (114)
Q Consensus        90 ~l~~~--~~~s~~a~L~V~~~  108 (114)
                      .....  ...|.+..|.|+..
T Consensus       179 ~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          179 NRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             TTSTTEECCCCCCEEEEEC--
T ss_pred             CCCCCcCCCCCCcEEEEEecC
Confidence            63211  23567889999854

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.33  E-value=8.6e-12  Score=89.45  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=66.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC----------------CeeeeeeeeccCCcEEEcc----CCc
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE----------------GVSEARSIIHSGGRYSITT----AGA   68 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd----------------~~~~~~~~~~~~~r~~v~~----~G~   68 (114)
                      .+...|++..+.+|.+|.|.|.+.+...+  .+.|+|.                +..+.  .....+||.+..    ++.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~   78 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQAT--TMFWYRQFPKQSLMLMATSNEGSKATYE--QGVEKDKFLINHASLTLST   78 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCC--SEEEEEECTTSCCEEEEEECTTSCCEEC--TTCCGGGEEEEEEETTEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCce--EEEEEEECCCCCcEEEEEEccCCCceec--CcccCCcEEEEecCCCEEE
Confidence            35667888999999999999998765333  7999992                22110  001127998864    237


Q ss_pred             EEEeecCCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEec
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSE  107 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~  107 (114)
                      |.|.+|+.+|+| .|+|.+.|..++ ....+..+.|.|..
T Consensus        79 L~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           79 LTVTSAHPEDSS-FYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             EEECSCCGGGCE-EEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             EEECCCCHHHCE-EEEEEEecCCCCcceEEcCCEEEEEec
Confidence            999999999995 999999976321 22345677888874

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.33  E-value=4.4e-12  Score=87.31  Aligned_cols=80  Identities=21%  Similarity=0.307  Sum_probs=58.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeee-------------eccCCcEEEcc------CCcEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSI-------------IHSGGRYSITT------AGALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~-------------~~~~~r~~v~~------~G~L~I~   72 (114)
                      .|++..|.+|++|.|.|.+.+.+.+.. .|+|+|++..+....             ....+|+....      +++|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            466789999999999999977655544 699999876532100             11234555432      4679999


Q ss_pred             ecCCCCCCeeeEEEEeeccCC
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +++.+|+| .|.|.+.|..++
T Consensus        85 ~v~~~D~G-~Y~C~~~~~~~~  104 (218)
T 4frw_A           85 NAVQADEG-EYECRVSTFPAG  104 (218)
T ss_dssp             SCCGGGCE-EEEEEEEEETTE
T ss_pred             eccHHHCC-ceeEEEEeccCc
Confidence            99999995 999999987543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.32  E-value=5e-12  Score=91.09  Aligned_cols=90  Identities=14%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEE-EccCC--cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYS-ITTAG--ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~-v~~~G--~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+.+.|. ..|.+|++++|.|.+.+ ..+  .+.|+||+..+.   . ...++. ...++  .|.|.+|+.+|+| .|+
T Consensus        10 P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~--~~~W~k~g~~~~---~-~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   80 (218)
T 1uct_A           10 PFISAKSS-PVIPLDGSVKIQCQAIR-EAY--LTQLMIIKNSTY---R-EIGRRLKFWNETDPEFVIDHMDANKAG-RYQ   80 (218)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECCCT-TCS--EEEEEEEETTEE---E-ECSEECC----CCCEEEECSCCGGGCE-EEE
T ss_pred             CEEEecCC-CccCCCCCEEEEEEcCC-CCC--EEEEEECCCccc---c-cccccCCCCcceeeEEEEcccccccCE-EEE
Confidence            45778887 68999999999999865 222  899999987541   1 111221 12345  8999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEec
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|.|..+ ....|....|.|.+
T Consensus        81 C~a~n~~~-~~~~s~~~~l~V~~  102 (218)
T 1uct_A           81 CQYRIGHY-RFRYSDTLELVVTG  102 (218)
T ss_dssp             EEEEETTT-EEEECCCEEEEEEC
T ss_pred             EEEEcCCC-ceeecCCEEEEEcC
Confidence            99999743 33457788898875

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=99.32  E-value=2.5e-12  Score=84.94  Aligned_cols=90  Identities=19%  Similarity=0.251  Sum_probs=60.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCC-cc-eEEEeeCCe-----ee-ee-----eeec----cCCcEEEccCC--------
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHN-LL-LIAWLREGV-----SE-AR-----SIIH----SGGRYSITTAG--------   67 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd~~-----~~-~~-----~~~~----~~~r~~v~~~G--------   67 (114)
                      .|....+.+|.+|.|.|.+.+...+ .. .+.|+|++.     .+ ++     ....    -.+|+.+..++        
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~   87 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTE   87 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCC
T ss_pred             cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccc
Confidence            4667789999999999998543322 23 789999631     01 11     0111    23788887654        


Q ss_pred             ------cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          68 ------ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        68 ------~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                            +|.|+|++.+|+| .|+|.+.+.-.+  ..+..+.|.|
T Consensus        88 ~~~~~~sL~I~~v~~~D~G-~Y~C~v~~~~~g--~~~~~~~L~V  128 (128)
T 3r0n_A           88 AELQDATLALHGLTVEDEG-NYTCEFATFPKG--SVRGMTWLRV  128 (128)
T ss_dssp             CBCSBCCEEECSCCGGGCE-EEEEEEEEETTE--EEEEEEEEEC
T ss_pred             cCCCCeEEEEccCCchhCe-EEEEEEEeCCCC--CcccEEEEEC
Confidence                  8999999999995 999998765434  2444566654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.32  E-value=5.2e-12  Score=99.73  Aligned_cols=94  Identities=17%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--eeeeee-------eccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SEARSI-------IHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      ...+|++..|.+|++|.|.|.+.+.+.+  .++|+|++.  .+....       ...++||.+..++   .|.|.+|+.+
T Consensus         3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (523)
T 2rcj_C            3 VLTQPPSASGTPGQRVTISCTGTSSGSI--TVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAE   80 (523)
T ss_pred             ccccCCceEEecCCcEEEEEEEeccCCc--eEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChh
Confidence            3456889999999999999999765333  899999852  110000       1124799875433   7999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|+|.|.|..++....+..++|.|.
T Consensus        81 D~G-~Y~C~a~n~~g~~~~~~~~~~l~V~  108 (523)
T 2rcj_C           81 DES-DYYCASWNSSDNSYVFGTGTKVTVL  108 (523)
T ss_pred             hCE-EEEEEEccCCCccccccCceEEEec
Confidence            995 9999999986544344567888884

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.32  E-value=2.9e-12  Score=91.03  Aligned_cols=92  Identities=9%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcE---EEeecCCCCCCeee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSEARSIIHSGGRYSITTAGAL---HIRDTGMEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L---~I~~v~~~D~gg~Y   83 (114)
                      +++...+....+.+|..+.|.|.+.+. +.+  .++|+|++..++.   ....++....+|.+   .|-+++.+|+| .|
T Consensus       119 ~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p--~i~W~k~~~~~~~---~~~~~~~~~~~g~~~v~s~l~v~~~d~G-~Y  192 (226)
T 4f80_A          119 ALGSDLHVDVKGYKDGGIHLECRSTGWYPQP--QIQWSNNKGENIP---TVEAPVVADGVGLYAVAASVIMRGSSGE-GV  192 (226)
T ss_dssp             BCCCCCEEEEEEEETTEEEEEEEEEEEBSCC--EEEEECTTSCBCC---CEECCCEECTTSCEEEEEEEEECC-----CE
T ss_pred             cceecccceeeeccCCceeeEEEeccCCCCC--EEEEEECCceEcC---CCceEEEECCCCcEEEEEEEEechhcCc-EE
Confidence            345556667789999999999998653 333  8999998765421   22234444556654   34578999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.|.|.++++   +..+.|.|.+|
T Consensus       193 tC~a~N~~g~~---~~~~~v~v~ep  214 (226)
T 4f80_A          193 SCTIRSSLLGL---EKTASISIADP  214 (226)
T ss_dssp             EEEEEETTTTE---EEEEEECCCTT
T ss_pred             EEEEEeCCCCe---EEEEEEEECCC
Confidence            99999998764   45678888775

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.32  E-value=8.4e-12  Score=88.94  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eee-------eeccCCcEEEcc----CCcEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARS-------IIHSGGRYSITT----AGALHIRD   73 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~-------~~~~~~r~~v~~----~G~L~I~~   73 (114)
                      +...|++..+.+|++|.|.|. .+.+.+  .+.|+|++  ..+   ++.       .....+||.+..    ++.|.|.+
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~--~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   79 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHN--NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILEL   79 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCS--EEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESS
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCc--cEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEec
Confidence            456788999999999999999 443333  89999962  211   000       011256888863    34799999


Q ss_pred             cCCCCCCeeeEEEEeeccCC--cEEeCCCeEEEEeccc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTG--ERKISPPSQVMVSEIA  109 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~~~  109 (114)
                      |+.+|+| .|+|.|.|..+.  ....+..+.|.|..+.
T Consensus        80 v~~~DsG-~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  116 (238)
T 2p1y_A           80 ATPSQTS-VYFCASGDLGQTNERLFFGHGTKLSVLGSA  116 (238)
T ss_dssp             CCGGGCE-EEEEEEEC------CEEECCCEEEEEECCC
T ss_pred             CCcccCe-eEEEEEEeCCCccccceeCCCeEEEEeccC
Confidence            9999995 999999997531  2233456788887543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.32  E-value=4.4e-12  Score=92.39  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=69.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCeeeeeee-------eccCCcEEEccC---CcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVSEARSI-------IHSGGRYSITTA---GALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~~~~~~-------~~~~~r~~v~~~---G~L~I~~v~~~   77 (114)
                      +...|.+..+.+|.+|.|.|.+.+.+.+  .+.|+|  ++..+....       ....+||.+..+   +.|.|.+++.+
T Consensus       142 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  219 (257)
T 1f3r_B          142 LTQSPSLLSASVGDRVTLSCKGSQNINN--YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPE  219 (257)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGG
T ss_pred             EEccCCEEEEcCCCCEEEEEEECCcCCC--cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChh
Confidence            3445667789999999999999765433  799999  555321100       012578987543   37999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |+| .|.|.|.|..   ...+..++|.|+++..
T Consensus       220 D~G-~Y~C~a~n~~---~~~g~gt~l~V~~~~~  248 (257)
T 1f3r_B          220 DVA-TYFCYQYNNG---YTFGAGTKLELKAAEQ  248 (257)
T ss_dssp             GCS-EEEEEEESSS---EEECCCCEECCSSSCC
T ss_pred             hCE-EEEEEEeCCC---CeECCCEEEEEeCCCc
Confidence            995 9999999964   3567788999986543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.32  E-value=3.7e-12  Score=93.84  Aligned_cols=96  Identities=18%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeee----eeccCCcEEEccCC---cEEEeecC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARS----IIHSGGRYSITTAG---ALHIRDTG   75 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~----~~~~~~r~~v~~~G---~L~I~~v~   75 (114)
                      ..+...|++..+.+|++|.|.|.+.+.+.+  .+.|+|++.     .++..    ....++||.+..++   .|.|++++
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~--~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   90 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVST--AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ   90 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCC--cEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence            457778999999999999999999765433  799998652     11110    00125799887655   79999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+| .|+|.|.|..+.  ..+..+.|.|..+
T Consensus        91 ~~DsG-~Y~C~~~n~~~~--~~~~~~~l~V~~~  120 (276)
T 3auv_A           91 PEDFA-TYYCQQHYTTPP--TFGCGTKVEIKGG  120 (276)
T ss_dssp             GGGCE-EEEEEECSSSSC--CCCCCEEEEC---
T ss_pred             hhhCE-EEEEEEecCCcc--cccCCEEEEEecC
Confidence            99995 999999997432  2344678888765

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.32  E-value=8.9e-12  Score=90.23  Aligned_cols=95  Identities=20%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee------------eeccCCcEEEccCCc-----EE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS------------IIHSGGRYSITTAGA-----LH   70 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~------------~~~~~~r~~v~~~G~-----L~   70 (114)
                      +.+.|.+..|.+|++|.|.|.+.++..+...+.|+|.  +..+...            .....+||.+..++.     |.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            4577889999999999999998764322228999992  2211100            012247998875443     99


Q ss_pred             EeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.+|+.+|+| .|.|.|.|....  ..+..+.|.|.+
T Consensus        84 I~~v~~~DsG-~Y~C~~~~~~~~--~~~~~~~l~V~~  117 (253)
T 3uzq_A           84 LSSLTSGDTA-VYYCSRGWEGFA--YWGQGTLVTVSA  117 (253)
T ss_dssp             ECSCCGGGCE-EEEEEECSSSCC--EECCCEEEEECS
T ss_pred             eCCCCcccCE-EEEEEEeeCCcc--EECCCcEEEEec
Confidence            9999999995 999999995332  345688898885

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.32  E-value=9.8e-12  Score=90.49  Aligned_cols=97  Identities=15%  Similarity=0.221  Sum_probs=69.8

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeee-----eeccCCcEEEc-----cCCcEEEe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARS-----IIHSGGRYSIT-----TAGALHIR   72 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~-----~~~~~~r~~v~-----~~G~L~I~   72 (114)
                      +.+...|++..+.+|++|.|.|.+.+.+.+  .+.|+|..  ..   ++..     ....++||.+.     .++.|.|+
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   81 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATP--YLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKA   81 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEES
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCc--eEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEEC
Confidence            456778889999999999999999665333  89999842  11   1100     01236788882     24469999


Q ss_pred             ecCCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|.|.|.|..++ ....+..+.|.|.+
T Consensus        82 ~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           82 SVHRSDSA-VYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             SCCGGGCS-EEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             CCCcccCE-EEEEEEecCCCccceEECCCeEEEEeC
Confidence            99999996 999999997542 23455678899886

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-11  Score=82.62  Aligned_cols=99  Identities=18%  Similarity=0.153  Sum_probs=66.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee---eeeeee-ccCCcEEEcc--------CCcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS---EARSII-HSGGRYSITT--------AGALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~---~~~~~~-~~~~r~~v~~--------~G~L~I~~v~~~   77 (114)
                      +...|+...+.+|.+|.|.|.+.+.... ..+.|+|++..   +++... ...+||....        +..|.|++++.+
T Consensus        11 v~q~p~~~~v~~G~~v~L~C~~~~~~~~-~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   89 (136)
T 2d9c_A           11 VIQPEKSVSVAAGESATLRCAMTSLIPV-GPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA   89 (136)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSC-CCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTT
T ss_pred             EEecCcEEEEcCCCCEEEEEEEcCCCCC-ceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHH
Confidence            3445678899999999999998654211 17899998631   221110 0114665421        468999999999


Q ss_pred             CCCeeeEEEEeeccC---CcEEeCCCeEEEEecccc
Q psy9140          78 DSYIRYYCQTTHKLT---GERKISPPSQVMVSEIAL  110 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~---~~~~~s~~a~L~V~~~~~  110 (114)
                      |+| .|.|.+.+...   .+...+..++|.|..+..
T Consensus        90 DsG-~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s  124 (136)
T 2d9c_A           90 DAG-TYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS  124 (136)
T ss_dssp             TCE-EEEEEEEECCSSSCEEEEECCCEEEEEECCCC
T ss_pred             HCE-EEEEEEEeCCCCcccceeeCCCeEEEEEeCCC
Confidence            995 99999998532   122345688999987653

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.31  E-value=3.9e-13  Score=100.25  Aligned_cols=95  Identities=12%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             ceeeccceeEEEeCCeEEEEeec---CCCCCCcceEEEeeCCeeeeee----eeccCCcEEEccCC------cEEEeecC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARS----IIHSGGRYSITTAG------ALHIRDTG   75 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~---~~~~~~~~~vsW~kd~~~~~~~----~~~~~~r~~v~~~G------~L~I~~v~   75 (114)
                      .+...+++..+.+|.++.|.|.+   .+.+.++ .+.|++++..+...    ....+.|+.+..+|      .|.|.+++
T Consensus       228 ~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~  306 (339)
T 3o4o_C          228 VIISPLKTISASLGSRLTIPCKVFLGTGTPLTT-MLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVT  306 (339)
T ss_dssp             EECCCSCCCCCCCCSCCCCCCCEEESSSCCSSC-EEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSC
T ss_pred             EEecCCceeEeccCCCEEEEEEEECCCCCCCCc-eEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEec
Confidence            45555667789999999999999   6654222 89999998764210    13456778777788      89999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+|+||.|+|.|.|.++.   .+..+.|.+..
T Consensus       307 ~~d~~G~Y~C~a~N~~G~---~~~~~~~~~~~  335 (339)
T 3o4o_C          307 REDLHMDFKCVVHNTLSF---QTLRTTVKEHH  335 (339)
T ss_dssp             CCSCCCCCEEEEEETTEE---ECCBCCCCC--
T ss_pred             hhhcCccEEEEEEeccCc---eEEEEEhhHhc
Confidence            999845999999999874   46666665543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.31  E-value=7.4e-12  Score=99.72  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=72.8

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeec--------cCCcEEEccCC------cEEEee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIH--------SGGRYSITTAG------ALHIRD   73 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~--------~~~r~~v~~~G------~L~I~~   73 (114)
                      +.|...+++..+.+|.++.|.|.+.+..+++ .+.|+|++.........        ..+|+.+..+|      .|.|.+
T Consensus       113 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~  191 (585)
T 2ocw_A          113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQK-RKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ  191 (585)
T ss_pred             ccccCCCccEEEEcCCCEEEEEEecCCCCCc-cEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEcc
Confidence            4577888999999999999999997543222 78999998642111111        24788887766      699999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      ++.+|+| .|+|.|.|..+.   .+..+.|.|..+
T Consensus       192 v~~~D~G-~Y~C~a~n~~g~---~~~~~~l~V~~~  222 (585)
T 2ocw_A          192 LRLSDAG-QYLCQAGDDSNS---NKKNADLQVLKP  222 (585)
T ss_pred             CChhHCe-EEEEEeccCCcc---ccceEEEEEccC
Confidence            9999995 999999998654   466888988864

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.31  E-value=5e-12  Score=91.84  Aligned_cols=99  Identities=20%  Similarity=0.267  Sum_probs=59.3

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC---Cee--eeeee-------e---ccCCcEEEc----cCC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE---GVS--EARSI-------I---HSGGRYSIT----TAG   67 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd---~~~--~~~~~-------~---~~~~r~~v~----~~G   67 (114)
                      .+.++..|++..+.+|++|.|.|.+.+.+.+  .+.|+|.   ...  ++...       .   ..+.++...    .+.
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   79 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTG--YIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL   79 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----C--EEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCc--EEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE
Confidence            3456778899999999999999999765433  8999982   221  11100       0   011333321    234


Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|.|++|+.+|+| .|.|.+.|..+.....+..+.|.|.++
T Consensus        80 ~L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           80 RMILRNLIENDSG-VYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             EEEESSCCGGGCE-EEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             EEEECCCCcccCE-EEEEEEeeCCccccEECCCCEEEEecC
Confidence            6999999999995 999999997654445677889999874

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.31  E-value=9.6e-12  Score=90.01  Aligned_cols=95  Identities=17%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCC---cceEEEeeCCe--e---eeee----eeccCCcEEEccCC---cEEEeec
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHN---LLLIAWLREGV--S---EARS----IIHSGGRYSITTAG---ALHIRDT   74 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~---~~~vsW~kd~~--~---~~~~----~~~~~~r~~v~~~G---~L~I~~v   74 (114)
                      +...|++..+.+|++|.|.|.+.+.+..   ...+.|+|++.  .   +++.    .....+||.+..++   .|.|.++
T Consensus        37 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  116 (252)
T 3bkj_L           37 MTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRV  116 (252)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCC
Confidence            4455889999999999999999765410   12899999652  1   1110    01124799887555   8999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +.+|+ |.|+|.|.|....  ..+..++|.|..
T Consensus       117 ~~~D~-G~Y~C~~~~~~~~--~~~~~~~l~V~~  146 (252)
T 3bkj_L          117 EAEDL-GVYYCFQASLVPL--TFGAGTKLELKR  146 (252)
T ss_dssp             CGGGC-EEEEEEECSBSSC--EECCCEEEEECC
T ss_pred             CcccC-EEEEEEEEcCCcc--EECCCEEEEEeC
Confidence            99999 5999999997432  344567888864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.31  E-value=1.4e-11  Score=89.34  Aligned_cols=95  Identities=20%  Similarity=0.270  Sum_probs=69.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee-------eccCCcEEEccCC---cEEEeecC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI-------IHSGGRYSITTAG---ALHIRDTG   75 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~   75 (114)
                      +.+...|.+..+.+|.+|.|.|.+.+.+.++ .+.|+|.  +..+....       ...++||.+..++   .|.|.+++
T Consensus       150 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  228 (256)
T 3juy_B          150 IVLTQAPGTLSLSPGERATFSCRSSHSIRSR-RVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE  228 (256)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCTTC-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEEEecCCeEEEeCCCCEEEEEEECCCcCCe-eEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence            3567788899999999999999997644312 7999983  22211000       0135788886545   49999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .+|+| .|.|.|.|.  +....+..++|.|+
T Consensus       229 ~~DsG-~Y~C~~~~~--~~~~~g~gt~l~V~  256 (256)
T 3juy_B          229 PEDFA-LYYCQVYGA--SSYTFGQGTKLERK  256 (256)
T ss_dssp             GGGCS-EEEEEECCS--SCCEECCCEEEEEC
T ss_pred             HhHCE-EEEEEEeeC--CCceEcCCEEEEEC
Confidence            99996 999999995  34456778899885

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.31  E-value=3.9e-12  Score=88.75  Aligned_cols=88  Identities=15%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcE---EEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRY---SITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~---~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +...|. ..+.+|.++.|.|.+.+.   +..+.|.|++..+.    ....+.   ....++.|.|.+|+.+|+| .|+|.
T Consensus       103 ~~~~~~-~~v~~G~~v~L~C~~~~~---~~~~~w~k~g~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~  173 (196)
T 3p2t_A          103 LSALPS-PLVTSGKSVTLLCQSRSP---MDTFLLCKERAAHP----LLCLRSEHGAQQHQAEFPMSPVTSVHGG-TYRCF  173 (196)
T ss_dssp             EEEESC-SEECTTCCEEEEEEEEEE---EEEEEEEETTCCCG----GGSEEEEEEEEEEEEEEEECSCCGGGCE-EEEEE
T ss_pred             EEeCCc-ceecCCCeEEEEEecCCC---CCEEEEEeCCCccc----ceeecccccccCcceEEEeCCCcccCCC-eEEEE
Confidence            444443 378899999999998541   22789999998541    111111   2234689999999999995 99999


Q ss_pred             EeeccCCc--EEeCCCeEEEEe
Q psy9140          87 TTHKLTGE--RKISPPSQVMVS  106 (114)
Q Consensus        87 a~n~l~~~--~~~s~~a~L~V~  106 (114)
                      |.|..+..  ...|.+..|.|+
T Consensus       174 a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          174 SSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EECGGGTTEECCCCCCEEEEEC
T ss_pred             EEcCCCCcccCCCCCCEEEEeC
Confidence            99987522  235668888875

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.31  E-value=1.8e-12  Score=102.43  Aligned_cols=87  Identities=15%  Similarity=0.126  Sum_probs=69.4

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcce-EEEeeCCeeeeeeeeccCCcEEEccCC-------cEEEeecCCCCCCeeeEEEE
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLL-IAWLREGVSEARSIIHSGGRYSITTAG-------ALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~-vsW~kd~~~~~~~~~~~~~r~~v~~~G-------~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +..+.+|.++.|.|.+.+++.+  . ++|+|++..+.    ....||....++       .|.|.+++.+|+| .|+|.|
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p--~~v~W~k~g~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a  394 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKP--EHQQWIYMNRTFT----DKWEDYPKSENESNIRYVSELHLTRLKGTEGG-TYTFLV  394 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCC--CEEEEESSSCBCS----SSBCCEESCCSSSCCEEEEEEEECSCCGGGCE-EEEEEE
T ss_pred             eEEEcCCCcEEEEEEEeecCCC--cEEEEEECCeecc----CCccceeEEccCCCceeEEEEEEeecCcccCe-EEEEEE
Confidence            6889999999999999776544  5 99999998641    222377766544       8999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEecccccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      .|..+.   .+..+.|.|..++.+.
T Consensus       395 ~N~~g~---~~~~~~l~V~~~P~i~  416 (524)
T 2ec8_A          395 SNSDVN---AAIAFNVYVNTKPEIL  416 (524)
T ss_dssp             ECSSCE---EEEEEEEEECEEEEEE
T ss_pred             EecCce---EEEEEEEEEecCCeEe
Confidence            998764   4557899998887664

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.30  E-value=1.2e-11  Score=86.46  Aligned_cols=98  Identities=18%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             eeec-cceeEEEeCCeEEEEeecCCCC----CCcc-eEEEeeCCee-----eeeee-------eccCCcEEEcc-----C
Q psy9140          10 YEIN-TGNTFVLRGNIAVLQCNIPAYN----HNLL-LIAWLREGVS-----EARSI-------IHSGGRYSITT-----A   66 (114)
Q Consensus        10 ~~v~-~~d~~v~~G~~AvL~C~~~~~~----~~~~-~vsW~kd~~~-----~~~~~-------~~~~~r~~v~~-----~   66 (114)
                      |.++ |++..+.+|.+|+|.|.+.+..    ..+. .+.|+|++..     +++..       ....+||.+..     +
T Consensus         2 ~~~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   81 (214)
T 2zg1_A            2 YELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKN   81 (214)
T ss_dssp             CEEECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTB
T ss_pred             ceeeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCe
Confidence            4444 7888999999999999985320    0123 8999998753     11100       12347999864     3


Q ss_pred             CcEEEeecCCCCCCeeeEEEEeeccCCcEE-eCCCeEEEEecc
Q psy9140          67 GALHIRDTGMEDSYIRYYCQTTHKLTGERK-ISPPSQVMVSEI  108 (114)
Q Consensus        67 G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~-~s~~a~L~V~~~  108 (114)
                      ++|.|++++.+|+| .|.|.+.|..+.... .+....|.|.++
T Consensus        82 ~sL~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~l~V~~~  123 (214)
T 2zg1_A           82 CSLSIGDARMEDTG-SYFFRVERGRDVKYSYQQNKLNLEVTAL  123 (214)
T ss_dssp             CCEEECSCCGGGCE-EEEEEEEETTTEEEECCSSCEEEEEECC
T ss_pred             EEEEEccCCHhhCc-eEEEEEEcCCCceeeecCCceEEEEecC
Confidence            47999999999995 999999986422111 235788988864

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.30  E-value=3.3e-11  Score=86.30  Aligned_cols=96  Identities=23%  Similarity=0.397  Sum_probs=64.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee--e-ee-----eecc---CCcEEEccCC----cEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE--A-RS-----IIHS---GGRYSITTAG----ALH   70 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~--~-~~-----~~~~---~~r~~v~~~G----~L~   70 (114)
                      ..+...|++..+.+|++|+|.| ..+...+  .+.|+|.  +...  + ..     ....   ++||.+..++    .|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~--~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~   79 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHL--YFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLK   79 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCC--EEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEE
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCC--EEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEE
Confidence            3466778899999999999999 4443222  8999982  1110  0 00     0011   2899987532    799


Q ss_pred             EeecCCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEec
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSE  107 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~  107 (114)
                      |++|+.+|+| .|+|.+.+...+ ....+..+.|.|..
T Consensus        80 I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (245)
T 4ei6_B           80 IQPTALEDSA-VYFCASSFWGAYAEQFFGPGTRLTVLE  116 (245)
T ss_dssp             ECSCCGGGCE-EEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred             ECCCCHhHCE-EEEEEEccCCCcceEEEcCCcEEEEec
Confidence            9999999995 999999964211 22356677888874

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.30  E-value=1e-11  Score=87.03  Aligned_cols=90  Identities=19%  Similarity=0.203  Sum_probs=64.2

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCC-cceEEEeeCC--eeeeeee-------eccCCcEEEccCC---cEEEeecCCCCCC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHN-LLLIAWLREG--VSEARSI-------IHSGGRYSITTAG---ALHIRDTGMEDSY   80 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~-~~~vsW~kd~--~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~~~D~g   80 (114)
                      |++..+.+|.+|.|.|.+.+.+.+ ...+.|+|++  ..+....       ....+||.+..++   .|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            889999999999999998665421 1279999963  2210000       0225799876543   8999999999994


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                       .|+|.|.|..+  ...+..+.|.|.
T Consensus        87 -~Y~C~~~~~~~--~~~~~~~~l~V~  109 (212)
T 1q0x_L           87 -IYFCALWSNNK--LVFGGGTKLTVL  109 (212)
T ss_dssp             -EEEEEEECSSC--EEECCCEEEEEC
T ss_pred             -EEEEEEecCch--hhcCCCeEEEEe
Confidence             99999999743  234556788884

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.30  E-value=8.8e-12  Score=89.46  Aligned_cols=96  Identities=21%  Similarity=0.308  Sum_probs=67.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eee---------eeccCCcEEEccC-----CcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARS---------IIHSGGRYSITTA-----GALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~---------~~~~~~r~~v~~~-----G~L~I   71 (114)
                      ..+|....|.+|.+|.|.|.+.+.+.+...+.|+|++  ..+   ++.         .....+||.+..+     +.|.|
T Consensus         6 v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (247)
T 2ghw_B            6 LVQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM   85 (247)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence            3566778999999999999997653211279999953  111   100         0123579988653     36999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+.+|+| .|+|.|.|.. +....+..+.|.|.++
T Consensus        86 ~~v~~~D~G-~Y~C~~~n~~-~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           86 NSLRAEDTA-VYYCARDRSY-YLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             CSCCGGGCE-EEEEEEEETT-EEEEECCCEEEEECSC
T ss_pred             CcCCHHHCE-EEEEeeeccC-CccccCCceEEEEecc
Confidence            999999995 9999999962 2333556778988864

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.30  E-value=2.5e-11  Score=78.69  Aligned_cols=90  Identities=16%  Similarity=0.268  Sum_probs=63.7

Q ss_pred             ccceeEEEeCCeEEEEee-cCCCCCCcceEEEeeCCeeeeeee-------eccCCcEEEc--cC---CcEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCN-IPAYNHNLLLIAWLREGVSEARSI-------IHSGGRYSIT--TA---GALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~-~~~~~~~~~~vsW~kd~~~~~~~~-------~~~~~r~~v~--~~---G~L~I~~v~~~D~   79 (114)
                      +|+...+.+|.+|.|.|. +.+.... ..+.|+|.+.......       ....+||.+.  ++   ..|.|++++.+|+
T Consensus         6 qp~~~~v~~G~~v~L~C~v~~~~~~~-~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   84 (109)
T 1pew_A            6 QPHSVSESPGKTVTISCTRSSGNIAS-NYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   84 (109)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGG-SCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCCCEEEcCCCCEEEEEEeCCCCCCC-ccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhC
Confidence            478889999999999999 7544311 2789999873211100       0125799886  32   3699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      | .|.|.+.+.  +...-...++|.|.
T Consensus        85 G-~Y~C~~~~~--~~~~fg~GT~l~V~  108 (109)
T 1pew_A           85 A-DYYCQSYDA--RNVVFGGGTRLTVL  108 (109)
T ss_dssp             E-EEEEEEEET--TEEEECCCEEEEEC
T ss_pred             E-EEEEEEEeC--CceEECCCEEEEEe
Confidence            5 999999984  34455668888885

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.30  E-value=8.7e-12  Score=81.00  Aligned_cols=93  Identities=17%  Similarity=0.239  Sum_probs=63.7

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCC--CcceEEEeeCC--ee---eeeee----eccCCcEEEccCC---cEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNH--NLLLIAWLREG--VS---EARSI----IHSGGRYSITTAG---ALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~--~~~~vsW~kd~--~~---~~~~~----~~~~~r~~v~~~G---~L~I~~v~~   76 (114)
                      ...|.+..+.+|.+|.|.|.+.+...  ....+.|+|..  ..   ++...    ....+||.+..++   .|.|++++.
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~   84 (111)
T 1j05_L            5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCc
Confidence            44578889999999999999865431  11278999963  21   11100    0125799886433   799999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|+| .|.|.+.|.  +...-...++|.|+
T Consensus        85 ~DsG-~Y~C~~~~~--~~~~fg~gT~l~V~  111 (111)
T 1j05_L           85 DDVA-TYYCQQTNE--DPYTFGGGTKLEIK  111 (111)
T ss_dssp             GGCE-EEEEEECSS--SSCEECCCEEEEC-
T ss_pred             ccCE-EEEEEEecC--CCCEECCCEEEEEC
Confidence            9995 999999985  23345667787764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.30  E-value=4.5e-12  Score=91.79  Aligned_cols=101  Identities=13%  Similarity=0.200  Sum_probs=70.4

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCc--ceEEEeeCC--eeee---ee----eeccCCcEEEccCC---cEEEee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNL--LLIAWLREG--VSEA---RS----IIHSGGRYSITTAG---ALHIRD   73 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~--~~vsW~kd~--~~~~---~~----~~~~~~r~~v~~~G---~L~I~~   73 (114)
                      +.+...|.+..+.+|.+|.|.|.+.+.+.+.  ..+.|+|++  ..+.   ..    .....+||.+..++   .|.|.+
T Consensus       134 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~  213 (253)
T 3uzq_A          134 LVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINP  213 (253)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             ceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECC
Confidence            4566778889999999999999997644320  168999952  2211   00    00124788876543   599999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      ++.+|+| .|.|.|.|..  ....+..++|.|++...+
T Consensus       214 v~~~DsG-~Y~C~~~n~~--~~~fg~gt~l~v~~~~~~  248 (253)
T 3uzq_A          214 VEADDVA-TYFCQRSNEV--PWTFGGGTKLEIKRPLEH  248 (253)
T ss_dssp             CCGGGCE-EEEEEECSSS--SCCBCCCEEEEECCC---
T ss_pred             CCHHHCE-EEEEEEccCC--CcEECCCEEEEEcCCCCC
Confidence            9999995 9999999963  334677999999987654

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=99.30  E-value=9.7e-12  Score=82.08  Aligned_cols=96  Identities=20%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeCC----eeeeeeeeccCCcEEEccC--------CcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLREG----VSEARSIIHSGGRYSITTA--------GALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd~----~~~~~~~~~~~~r~~v~~~--------G~L~I~~v~   75 (114)
                      +..+|+...+.+|.+|.|.|.+.+... ... .+.|+|..    ..+........+||.+..+        ..|.|++++
T Consensus        10 ~v~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~   89 (120)
T 3noi_A           10 WVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVR   89 (120)
T ss_dssp             CEECCSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCC
T ss_pred             EEcCCCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCC
Confidence            456788889999999999999854321 112 79999975    2211001223579887532        379999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+|+| .|.|.+...-. ...-...++|.|+.
T Consensus        90 ~~DsG-~Y~C~v~~~~~-~~~fg~GT~l~V~~  119 (120)
T 3noi_A           90 GHDAS-IYVCRVEVLGL-GVGTGNGTRLVVEK  119 (120)
T ss_dssp             GGGCE-EEEEEEEETTT-EEEECCCEEEEEEC
T ss_pred             hhhCE-EEEEEEEECCc-cceeCCCeEEEEec
Confidence            99995 99999986422 23456688898875

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.30  E-value=9.3e-12  Score=87.69  Aligned_cols=91  Identities=15%  Similarity=0.224  Sum_probs=63.2

Q ss_pred             ccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCe--eeeeee-------eccCCcEEEccCC---cEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGV--SEARSI-------IHSGGRYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~--~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      +|++..+.+|++|.|.|.+ .+.. +...+.|+|++.  .+....       ....+||.+..++   .|.|.+++.+|+
T Consensus         6 qp~~~~v~~G~~v~L~C~v~~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   84 (216)
T 2xzc_L            6 QPPSVSAAPGQKVTISCSGSSSNI-GNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDE   84 (216)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTG-GGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCcEEecCCCeEEEEEEeecCCC-CCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccC
Confidence            3788999999999999995 3321 112899999642  110000       1125699887544   799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                       |.|+|.|.|..+ ....+..+.|.|.
T Consensus        85 -G~Y~C~~~~~~~-~~~~~~~~~l~V~  109 (216)
T 2xzc_L           85 -ADYYCGTWDSSL-NPVFGGGTKLEIK  109 (216)
T ss_dssp             -EEEEEEEECTTS-CEEEBCCEEEEEC
T ss_pred             -EEEEEEEEeCCC-cceECCCEEEEEc
Confidence             599999999754 1234556788886

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.29  E-value=7.3e-12  Score=88.85  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eee----eeccCCcEEEcc---CCcEEEeecCCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARS----IIHSGGRYSITT---AGALHIRDTGMEDS   79 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~----~~~~~~r~~v~~---~G~L~I~~v~~~D~   79 (114)
                      .+|++..+.+|++|.|.|.+.+...++..+.|+|++  ..+   ++.    .....+||.+..   ++.|.|.+++.+|+
T Consensus        24 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  103 (234)
T 2j6e_L           24 TQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDE  103 (234)
T ss_dssp             BCCSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTC
T ss_pred             eCCCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHC
Confidence            348888999999999999986543221158999974  211   100    011247898764   34899999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      | .|+|.|.|..+.....+..++|.|.
T Consensus       104 G-~Y~C~~~~~~~~~~~~~~~~~l~V~  129 (234)
T 2j6e_L          104 A-DYYCATWDDSLSAVIFGGGTKLTVL  129 (234)
T ss_dssp             S-EEEEEEEETTTTEEEECCCBCCCBC
T ss_pred             E-EEEEEEEcCCcceeEecCCEEEEEe
Confidence            5 9999999986532334556677773

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.29  E-value=1.9e-11  Score=89.38  Aligned_cols=98  Identities=18%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCc---ceEEEee--CCeeeeeee-------eccCCcEEEcc---CCcEEEeec
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNL---LLIAWLR--EGVSEARSI-------IHSGGRYSITT---AGALHIRDT   74 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~---~~vsW~k--d~~~~~~~~-------~~~~~r~~v~~---~G~L~I~~v   74 (114)
                      +...|.+..+.+|.+|.|.|.+.+.+.+.   ..+.|+|  ++..+....       ....+||.+..   .+.|.|.++
T Consensus       124 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  203 (256)
T 1nqb_A          124 LTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV  203 (256)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCC
Confidence            45567888899999999999997654330   2689999  555331100       01257888753   347999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      +.+|+| .|+|.|.|.  +....+..++|.|.++..
T Consensus       204 ~~~DsG-~Y~C~a~~~--~~~~fg~gt~l~V~~~~~  236 (256)
T 1nqb_A          204 EAEDLG-VYYCFQGSH--VPYTFGGGTKLEIKRAAA  236 (256)
T ss_dssp             CGGGCE-EEEEEECSS--SSCEECCCEEEEECC---
T ss_pred             ChHHCE-EEEEEEccC--CceEECCCEEEEEECCCC
Confidence            999995 999999985  334567789999986654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.29  E-value=6.3e-12  Score=94.93  Aligned_cols=92  Identities=17%  Similarity=0.283  Sum_probs=67.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|...+....+.+|+++.|.|.+.+.+.+  .++|.||+..+   ......|+.+..+|   .|.|.+++.+|+| .|+
T Consensus       101 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~i~W~~~g~~l---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~  174 (389)
T 2jll_A          101 PKFISNQTIYYSWEGNPINISCDVKSNPPA--SIHWRRDKLVL---PAKNTTNLKTYSTGRKMILEIAPTSDNDFG-RYN  174 (389)
T ss_dssp             EEECCSCCEEEECTTCCEEEEECEEEESCC--EEEEEETTEES---SCTTCTTEEEEECSSCEEEEECCCSTTSSE-EEE
T ss_pred             CEEecCcceEEeccCCEEEEEEEEEecCCC--eEEEEECCccC---CcccCceEEEeccCCEEEEEECCCChhhCE-EEE
Confidence            345555555678999999999999776443  89999999864   22233577776544   5999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.|.|..+.   .+..+.|.|.++
T Consensus       175 C~a~N~~G~---~~~~~~l~v~~~  195 (389)
T 2jll_A          175 CTATNHIGT---RFQEYILALADV  195 (389)
T ss_dssp             EEEEETTEE---EEEEEEEEECCC
T ss_pred             EEEEcCCCc---EEEEEEEEecCC
Confidence            999998764   333456665443

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.29  E-value=1.4e-11  Score=80.26  Aligned_cols=92  Identities=13%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee----eccCCcEEEcc---CCcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI----IHSGGRYSITT---AGALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~----~~~~~r~~v~~---~G~L~I~~v~~~   77 (114)
                      ....|.+..+.+|.+|.|.|.+.+...+  .+.|+|...     .++...    ....+||.+..   +..|.|++++.+
T Consensus         7 v~q~p~~~~~~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   84 (111)
T 1i3g_L            7 LTQSHKFMSTSVGDRVSITCKASQDVGT--AVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSE   84 (111)
T ss_dssp             EEESCSEEECCTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEEeCCEEEEcCCCCEEEEEEeCCCCCC--CEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHH
Confidence            4456788899999999999998654322  799998642     122100    01257998863   236999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+| .|.|.+.+.  ....-...++|.|+
T Consensus        85 DsG-~Y~C~~~~~--~~~~fg~GT~l~V~  110 (111)
T 1i3g_L           85 DLA-DYFCQQYSS--YPLTFGAGTKLELK  110 (111)
T ss_dssp             GCS-EEEEEECSS--SSCEECCCEEEEC-
T ss_pred             HCE-EEEEEEecC--CceEECCCeEEEEe
Confidence            996 999999986  23345667788775

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.29  E-value=4e-12  Score=100.06  Aligned_cols=89  Identities=15%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             ccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .+.+..+.+|+++.|.|.+.+ .+.+  .++|+|++..+...     ....+.|+ ...++.|.|.+|+.+|+| .|+|.
T Consensus       233 ~~~~~~v~~G~~v~L~C~~~g~~p~p--~i~W~k~g~~l~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G-~Y~C~  308 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGF--GLTWELENKALEEGNYFEMSTYSTNRT-MIRILFAFVSSVARNDTG-YYTCS  308 (423)
T ss_dssp             STTEEEEETTSCEEEEEEEEESSSCC--CEEEEESSSBCCGGGEEEEEEEETTTE-EEEEEEEEESSCCTTTCE-EEEEE
T ss_pred             CCCceEEeCCCeEEEEEEEEcCCCCc--EEEEEECCEEccccceeecccccCCce-eEEEEEEEEeecCHHHCE-EEEEE
Confidence            566888999999999999976 2223  79999999864210     00112222 333578999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEeccccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |.|.      .+..+.|.|.+++.+
T Consensus       309 A~N~------~~~~~~L~V~~~p~i  327 (423)
T 3qs7_E          309 SSKH------PSQSALVTIVEKGFI  327 (423)
T ss_dssp             ETTE------EEEEEEEEEESSCEE
T ss_pred             EecC------CCceEEEEEEeCCcc
Confidence            9997      356788888876543

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.29  E-value=1.1e-11  Score=80.86  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcc-eEEEeeCCe----e--eeeee---------eccCCcEEEc-----cCCcEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLL-LIAWLREGV----S--EARSI---------IHSGGRYSIT-----TAGALH   70 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~-~vsW~kd~~----~--~~~~~---------~~~~~r~~v~-----~~G~L~   70 (114)
                      .|....+.+|.+|.|.|.+.... .... .+.|.|++.    .  ++...         ..-.+|+.+.     .+++|.
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEE
Confidence            45677899999999999973221 1122 899998653    1  11100         0115788875     257899


Q ss_pred             EeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |++++.+|+| .|.|.+.+..+.. ..+...+|.|.+++.
T Consensus        85 I~~v~~~D~G-~Y~C~v~~~~~~~-~~~~~v~L~V~~~p~  122 (124)
T 1neu_A           85 IHNLDYSDNG-TFTCDVKNPPDIV-GKTSQVTLYVFEKVP  122 (124)
T ss_dssp             ECSCCGGGCE-EEEEEEEC----C-CEEEEEEEEEEC---
T ss_pred             EccCChhhCE-EEEEEEEcCCCCc-CcEeeEEEEEecCCC
Confidence            9999999995 9999999875431 124467888887653

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.29  E-value=2.1e-11  Score=88.77  Aligned_cols=98  Identities=17%  Similarity=0.268  Sum_probs=70.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeee----------eccCCcEEEcc----CCcEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSI----------IHSGGRYSITT----AGALHI   71 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~----------~~~~~r~~v~~----~G~L~I   71 (114)
                      +.+...|++..+.+|.+|.|.|.+.+. .+  .+.|+|.+  .......          ....+||.+..    ++.|.|
T Consensus       138 ~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I  214 (256)
T 3tf7_C          138 AAVTQSPRNKVTVTGENVTLSCRQTNS-HN--YMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTL  214 (256)
T ss_dssp             CCEEESCSEEEEETTCCEEECEEECSC-CS--EEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEE
T ss_pred             cEEEecCCEEEEeCCCcEEEEEEcCCC-ce--EEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEE
Confidence            356777888899999999999999654 23  79999843  1110000          01246777753    347999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .+++.+|+| .|+|.|.|.. ++..-...++|.|++...
T Consensus       215 ~~v~~~DsG-~Y~C~a~n~~-g~~~fG~gt~l~v~~~~~  251 (256)
T 3tf7_C          215 ESASPSQTS-LYFCASSDAP-GQLYFGEGSKLTVLELEH  251 (256)
T ss_dssp             SSCCGGGCE-EEEEEEEEET-TEEEECCCEEEEEECGGG
T ss_pred             CCCCHHHCE-EEEEEecCCC-CccEECCCeEEEEEcccc
Confidence            999999995 9999999975 455567799999997643

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.29  E-value=1.2e-11  Score=86.58  Aligned_cols=87  Identities=16%  Similarity=0.273  Sum_probs=62.1

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee-------eccCCcEEEcc---CCcEEEeecCCCCCCe
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI-------IHSGGRYSITT---AGALHIRDTGMEDSYI   81 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~-------~~~~~r~~v~~---~G~L~I~~v~~~D~gg   81 (114)
                      |.+..+.+|.+|.|.|.+.  +.+  .+.|+|+  +..+....       ....+||.+..   ++.|.|++|+.+|+| 
T Consensus         7 ~~~~~v~~G~~v~L~C~~~--~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G-   81 (211)
T 3tv3_L            7 PPSASGSPGQSITISCTGT--SNN--FVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA-   81 (211)
T ss_dssp             CSEEEECTTCEEEEEEECC--CSS--CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE-
T ss_pred             CceEEEcCCCCEEEEEEEC--CCC--eEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE-
Confidence            3378899999999999986  222  8999994  22211000       01347888643   447999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|+|.|.|..+. ...+..+.|.|.
T Consensus        82 ~Y~C~~~~~~~~-~~~~~~~~l~V~  105 (211)
T 3tv3_L           82 VYYCGSLVGNWD-VIFGGGTKLTVL  105 (211)
T ss_dssp             EEEEEEEETTTE-EEECCCEEEEEC
T ss_pred             EEEEEEecCCCc-eeECCCceEEEe
Confidence            999999997542 245668889988

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.29  E-value=1e-11  Score=88.05  Aligned_cols=87  Identities=20%  Similarity=0.211  Sum_probs=63.8

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +....+.+|+++.|.|.+.+.+.+  .+.|+|++..+... ...........++.|.|.+++.+|+| .|+|.|.|..+.
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~--~v~W~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~~~~   97 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGE-HRIGGIKLRHQQWSLVMESVVPSDRG-NYTCVVENKFGS   97 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCC--EEEEEETTEECCGG-GSTTCCEEEGGGTEEEECSCCGGGCE-EEEEEEEETTEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCc--eeEEEECCcccCCC-CcccceeeeccceEEEEEeCCcccCE-EEEEEEeecCCc
Confidence            346789999999999999775443  89999999865211 11112233455779999999999995 999999997543


Q ss_pred             cEEeCCCeEEEEec
Q psy9140          94 ERKISPPSQVMVSE  107 (114)
Q Consensus        94 ~~~~s~~a~L~V~~  107 (114)
                         .+....|.|..
T Consensus        98 ---~~~~~~l~V~~  108 (241)
T 3grw_A           98 ---IRQTYTLDVLE  108 (241)
T ss_dssp             ---EEEEEEEEEEC
T ss_pred             ---eEEEEEEEEec
Confidence               34457777765

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=105.89  Aligned_cols=85  Identities=7%  Similarity=-0.060  Sum_probs=66.4

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcE
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGER   95 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~   95 (114)
                      +..+.+|.++.|.|.+.+++.+  .++|+||+..+     ..+.++.. .++.|.|.+++.+|+| .|+|.|.|..+.  
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~p--~i~W~k~g~~l-----~~~~~~~~-~~~~L~I~~v~~~D~G-~YtC~A~N~~g~--  403 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRKSF-----PCEQKGLD-NGYSISKFCNHKHQPG-EYIFHAENDDAQ--  403 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESCC--EEEEEETTEEE-----ECBCCBCS-SSSEEEEECCCTTCCS-CEEEEEEETTEE--
T ss_pred             cEEEcCCCeEEEEEEEEecCCC--EEEEEECCEEC-----cCCccccc-CCcEEEEecCCcccCE-EEEEEEEeCCCc--
Confidence            4678899999999999876555  89999999864     33444433 5779999999999996 999999998764  


Q ss_pred             EeCCCeEEEEecccccc
Q psy9140          96 KISPPSQVMVSEIALPL  112 (114)
Q Consensus        96 ~~s~~a~L~V~~~~~~~  112 (114)
                       .+..+.|.|..++.+.
T Consensus       404 -~~~~~~L~V~~~P~i~  419 (527)
T 3qs9_E          404 -FTKMFTLNIRRKPQVL  419 (527)
T ss_dssp             -EEEEEEEC--CCCEEE
T ss_pred             -EEEEEEEEEecCCeEE
Confidence             3447899999888764

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.29  E-value=1.2e-11  Score=98.55  Aligned_cols=95  Identities=16%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeCCeeeeeeeecc-CCcEEEcc-C---CcEEEeecCCCCCCeeeE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLREGVSEARSIIHS-GGRYSITT-A---GALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd~~~~~~~~~~~-~~r~~v~~-~---G~L~I~~v~~~D~gg~Y~   84 (114)
                      ..|.+..+.+|.++.|.|.+.+... .+. .++|+||+..+....... ..+|.... +   +.|.|.+|+.+|+| .|+
T Consensus       447 ~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~  525 (585)
T 2ocw_A          447 KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG-WYW  525 (585)
T ss_pred             ccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCe-EEE
Confidence            3478889999999999999863221 222 899999998753211111 12244432 2   48999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |.|.|.++..  .+..++|.|++++
T Consensus       526 C~a~N~~G~~--~~~~~~l~V~~~p  548 (585)
T 2ocw_A          526 CGVKQGHFYG--ETAAVYVAVEERK  548 (585)
T ss_pred             EEeEeCCCcc--EEEEEEEEEEeee
Confidence            9999998642  3345899999876

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.28  E-value=5e-11  Score=80.12  Aligned_cols=98  Identities=17%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Cee---eeeee-----eccCCcEEEc--cC---CcEEEeec
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVS---EARSI-----IHSGGRYSIT--TA---GALHIRDT   74 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~---~~~~~-----~~~~~r~~v~--~~---G~L~I~~v   74 (114)
                      +...|+...+.+|.+|.|.|........ ..+.|+|.  +..   ++...     ....+||.+.  ++   ..|.|+++
T Consensus         4 ~~Q~P~~~~v~~G~~vtL~C~~s~~~~~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   82 (129)
T 3rrq_A            4 PTFSPALLVVTEGDNATFTCSFSNTSES-FVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRA   82 (129)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCCCC-C-EEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSC
T ss_pred             cEECCCEEEEeCCCCEEEEeEecCCCCC-cEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCC
Confidence            4567889999999999999998654222 27899974  211   21100     0124699886  22   36999999


Q ss_pred             CCCCCCeeeEEEEeeccCCc-EEeCCCeEEEEeccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGE-RKISPPSQVMVSEIA  109 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~-~~~s~~a~L~V~~~~  109 (114)
                      +.+|+| .|.|.+.|..... ...+..++|.|.+..
T Consensus        83 ~~~Dsg-~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           83 RRNDSG-TYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             CGGGCE-EEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             ChhHCE-EEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            999995 9999999976543 234678999998653

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.28  E-value=2.7e-11  Score=88.18  Aligned_cols=95  Identities=21%  Similarity=0.342  Sum_probs=65.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee-e------cc----CCcEEEcc----CCcEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI-I------HS----GGRYSITT----AGALH   70 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~-~------~~----~~r~~v~~----~G~L~   70 (114)
                      ..+...|++..+.+|++|+|.|.+..   +...+.|+|.  +....... .      ..    ++||.+..    ++.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~~---~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPIS---GHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLK  103 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCBT---TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeCC---CCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEE
Confidence            34556788889999999999999742   2228999992  22211000 0      01    28999875    56799


Q ss_pred             EeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |++|+.+|+| .|+|.+.|.. .....+..+.|.|.+
T Consensus       104 I~~v~~~D~G-~Y~C~~~~~~-~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D          104 IQRTERGDSA-VYLCATSALG-DTQYFGPGTRLTVLE  138 (268)
T ss_dssp             ECSCCGGGCE-EEEEEEESSS-SSCEECCCEEEEEES
T ss_pred             ECCCCcccCE-EEEEEEecCC-CceeeCCcEEEEEec
Confidence            9999999995 9999999842 122345677888875

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.28  E-value=2e-11  Score=88.21  Aligned_cols=97  Identities=21%  Similarity=0.396  Sum_probs=66.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-ee-----------ccCCcEEEccCCc-----EEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-II-----------HSGGRYSITTAGA-----LHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-~~-----------~~~~r~~v~~~G~-----L~I   71 (114)
                      ...+....+.+|.+|.|.|.+.+...+...+.|+|++  ..+... ..           ...+||.+..++.     |.|
T Consensus       138 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  217 (256)
T 3ux9_B          138 LVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQM  217 (256)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEE
Confidence            3445556799999999999996543212289999973  221100 01           2245998875444     999


Q ss_pred             eecCCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEecc
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSEI  108 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~~  108 (114)
                      .+++.+|+| .|+|.|.|.-.. .......++|.|+.+
T Consensus       218 ~~v~~~DsG-~Y~C~~~~~~~~~~~~~g~gt~l~V~~~  254 (256)
T 3ux9_B          218 NSLRAEDTA-VYYCARYIDFGDHMDFWGQGTLVTVSSL  254 (256)
T ss_dssp             CSCCGGGCE-EEEEEEEETTTTEEEEECCCEEEEECCC
T ss_pred             CCCChhhCE-EEEEEEEcCCCcceEEECCCeEEEEecC
Confidence            999999995 999999995211 223456889999865

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.28  E-value=8.1e-12  Score=87.77  Aligned_cols=93  Identities=15%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      .+.+.|. ..|.+|+++.|.|.+.+ ..+  .+.|+||+..+..  .....++.. ..++.|.|.+|+.+|+| .|+|.|
T Consensus        10 ~i~~~p~-~~v~~G~~v~L~C~~~~-~~~--~~~w~k~g~~~~~--~~~~~~~~~~~~~~~l~I~~v~~~D~G-~Y~C~a   82 (201)
T 1nkr_A           10 SLLAHPG-PLVKSEETVILQCWSDV-MFE--HFLLHREGMFNDT--LRLIGEHHDGVSKANFSISRMTQDLAG-TYRCYG   82 (201)
T ss_dssp             EEEEESC-SEEETTCCEEEEEEESS-CCS--EEEEEEESSSCEE--EEEECEEETTEEEEEEEESSCCGGGCE-EEEEEE
T ss_pred             eEEEEcC-CccCCCCcEEEEEeccC-CCC--EEEEEECCCcCCc--ceeeeecCCCCceEEEEeccCCcccCe-EEEEeE
Confidence            3667775 78999999999999853 222  8999999885421  111112221 24688999999999995 999999


Q ss_pred             eeccCC--cEEeCCCeEEEEecc
Q psy9140          88 THKLTG--ERKISPPSQVMVSEI  108 (114)
Q Consensus        88 ~n~l~~--~~~~s~~a~L~V~~~  108 (114)
                      .|...+  ....|..+.|.|.++
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~~~  105 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVIIGL  105 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEECS
T ss_pred             ecCCCCccccCCCCCEEEEeecc
Confidence            875321  112466788888753

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.28  E-value=2.3e-11  Score=82.39  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+.+.|.+..+.+|+++.|.|.+.+.+.+. .+.|+|++..+     ..       ..+.|.|.+++.+|+| .|+|.+
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~-~~~W~~~g~~~-----~~-------~~~~~~~~~~~~~d~G-~Y~C~~   70 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLI-----PT-------HTQPSYRFKANNNDSG-EYTCQT   70 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSS-CEEEEETTEEC-----TT-------CCSSEEEEECCGGGCE-EEEEEE
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcc-eEEEEECCeEc-----cc-------CccceEEEecccccCe-EEEEEE
Confidence            3467788888999999999999997753222 79999999853     21       1467899999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEecccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .|..     .+...+|.|..+..
T Consensus        71 ~~~~-----~s~~~~l~v~~~~~   88 (170)
T 3ry4_A           71 GQTS-----LSDPVHLTVLFEWL   88 (170)
T ss_dssp             TTSB-----CCCCEEEEEECCSE
T ss_pred             eCCC-----ceEeEEEEEECCce
Confidence            9742     35678888886543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.28  E-value=5.1e-11  Score=85.26  Aligned_cols=95  Identities=17%  Similarity=0.303  Sum_probs=64.9

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee--e-e-------eeeccCCcEEEcc----CCcEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE--A-R-------SIIHSGGRYSITT----AGALHIR   72 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~--~-~-------~~~~~~~r~~v~~----~G~L~I~   72 (114)
                      .+...|++..+.+|.+|.|.|.+.+   +...+.|+|..  ...  + .       ......+||.+..    ++.|.|+
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   80 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS---GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS   80 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT---TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEEC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC---CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEEC
Confidence            4556788899999999999999853   21289999921  100  0 0       0112247998864    3369999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|+|.+.+........+..+.|.|..
T Consensus        81 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~l~V~~  114 (240)
T 3q5y_A           81 ALELEDSA-MYFCASSLRWGDEQYFGPGTRLTVLE  114 (240)
T ss_dssp             SCCGGGCE-EEEEEEESSTTBCCEECCCEEEEEES
T ss_pred             cCChhHCE-EEEEEEccCCCcceEEcCCEEEEEec
Confidence            99999995 99999984322233456677888874

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.28  E-value=1.1e-11  Score=97.63  Aligned_cols=90  Identities=12%  Similarity=-0.029  Sum_probs=58.3

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      ....|.+..|.+|+++.|+|.+.+++.+  .+.|++++..+.. .....+.|+.    ..|.|.+|+.+|+| .|+|.|.
T Consensus        51 ~~~~~~~v~V~~G~~v~L~C~v~g~P~p--~i~W~~~~~~l~~~~~~~~~~~~~----~sL~I~~v~~~D~G-~Y~C~a~  123 (423)
T 3qs7_E           51 TVYEAAAVEVDVSASITLQVLVDAPGNI--SCLWVFKHSSLNCQPHFDLQNRGV----VSMVILKMTETQAG-EYLLFIQ  123 (423)
T ss_dssp             -----CEEEECSSCCEEEEEECSCCSSC--EEEEEETTEEECCCCBC-----CE----EEEEESSCCSSSCS-EEEEEEE
T ss_pred             ceeccccEEEecCCcEEEEEEEEcCCCC--eEEEEECCCccCccceeccccceE----EEEEEeecCcccCE-EEEEEEE
Confidence            3455668899999999999999875443  8999999875411 0111133332    35999999999996 9999999


Q ss_pred             eccCCcEEeCCCeEEEEeccc
Q psy9140          89 HKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |..+.   .+..+.|.|+.+.
T Consensus       124 N~~g~---~~~~~~l~V~~~p  141 (423)
T 3qs7_E          124 SEATN---YTILFTVSIRNTL  141 (423)
T ss_dssp             C--CE---EEEEEEEEEC---
T ss_pred             cCCCc---EEEEEEEEEecCc
Confidence            98653   4456788887543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.28  E-value=6.7e-12  Score=97.01  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=67.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +...|++..+.+|+++.|.|.+.+.+.++. .++|+||+..+..     +.++....++.|.|.+++.+|+| .|+|.|.
T Consensus        89 ~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~-----~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~  162 (450)
T 1z7z_I           89 VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR-----EPAVGEPAEVTTTVLVRRDHHGA-NFSCRTE  162 (450)
T ss_dssp             EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE-----EECCTTTEEEEEEEECCSSCSSC-EEEEEEE
T ss_pred             ceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeec-----ccccccccceEEEEEeeccccCc-eEEEEEE
Confidence            447888899999999999999977654432 7899999986521     11222223579999999999995 9999999


Q ss_pred             eccCCc-----EEeCCCeEEEEecc
Q psy9140          89 HKLTGE-----RKISPPSQVMVSEI  108 (114)
Q Consensus        89 n~l~~~-----~~~s~~a~L~V~~~  108 (114)
                      |..+..     ...+....|.|...
T Consensus       163 n~~g~~~~~~~~~~s~~~~l~v~~~  187 (450)
T 1z7z_I          163 LDLRPQGLELFENTSAPYQLQTFVL  187 (450)
T ss_dssp             EECGGGTSCEEEEECCCEECEECCC
T ss_pred             cccCCCCceEEeeccCccceeeecc
Confidence            986532     23345667777643

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.28  E-value=3.6e-12  Score=93.35  Aligned_cols=85  Identities=14%  Similarity=0.264  Sum_probs=66.7

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEee-cCCCCCCeeeEEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRD-TGMEDSYIRYYCQTTH   89 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~-v~~~D~gg~Y~C~a~n   89 (114)
                      +.+..+.+|..+.|.|.+.+.+.+  .++|+|++..+     ..+.||.+..   .+.|.|.+ ++.+|+| .|+|.|.|
T Consensus       111 ~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~~d~G-~Y~C~a~N  182 (305)
T 2nzi_A          111 MGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLI-----DNNGHYQVIVTRSFTSLVFPNGVERKDAG-FYVVCAKN  182 (305)
T ss_dssp             SCCEEEETTCCEEEEEEEEEESCC--EEEEEESSSBC-----CSSSSCEEEECSSEEEEEETTCCCSTTCE-EEEEEEEE
T ss_pred             cccEEecCCCEEEEEEEECCCCCC--EEEEEECCEEC-----CCCCcEEEEEcCCceEEEEecCCccCccE-EEEEEEEe
Confidence            356788999999999999776444  89999998853     4567887753   46899999 9999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEEeccc
Q psy9140          90 KLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~~  109 (114)
                      ..+.   .+..+.|.|.+++
T Consensus       183 ~~G~---~~~~~~l~v~~~P  199 (305)
T 2nzi_A          183 RFGI---DQKTVELDVADVP  199 (305)
T ss_dssp             TTEE---EEEEEEEEEEBCC
T ss_pred             CCCc---eeeEEEEEEecCC
Confidence            8764   3446777777544

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.28  E-value=7.5e-12  Score=102.93  Aligned_cols=90  Identities=16%  Similarity=0.211  Sum_probs=74.9

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~   82 (114)
                      ..+.|...+.+..+.+|++|.|.|.+.+.+.|  .|.|+|++..|     ..+.||.+..+|   .|.|.++..+|+| .
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P--~v~W~k~~~el-----~~s~~~~i~~~~~~~~L~I~~~~~~D~G-~  552 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPP--VVTWHKDDREL-----KQSVKYMKRYNGNDYGLTINRVKGDDKG-E  552 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCC--EEEEEETTEEC-----CSSSSEEEEEETTEEEEEECSCCGGGCE-E
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCC--eEEEEECCEEc-----ccCCcEEEEEcCCEEEEEEcCCCcccCc-E
Confidence            34668889999999999999999999876655  89999999854     567899886544   5999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+|+|.|.+|.   .+..++|.|+
T Consensus       553 Yt~~A~N~~G~---~~~~v~l~Vt  573 (573)
T 3uto_A          553 YTVRAKNSYGT---KEEIVFLNVT  573 (573)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEC
T ss_pred             EEEEEEeCCCc---EEEEEEEEEC
Confidence            99999999864   4667777774

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.28  E-value=3.8e-12  Score=90.29  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEee----CCeeeeeeeeccCCcEEE----------ccCCcEEEeecCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR----EGVSEARSIIHSGGRYSI----------TTAGALHIRDTGMED   78 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k----d~~~~~~~~~~~~~r~~v----------~~~G~L~I~~v~~~D   78 (114)
                      .+.+..+.+|.++.|.|.+.+.+.+  .+.|+|    ++..+    ...+.++..          ..++.|.|.+++.+|
T Consensus       120 ~~~~~~~~~g~~v~L~C~~~~~p~p--~v~W~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  193 (241)
T 3grw_A          120 LPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKV----GPDGTPYVTVLKSWISESVEADVRLRLANVSERD  193 (241)
T ss_dssp             TTCSEECCTTCCEEEEEEEECSSCC--EEEEEEECCSSSCSS----CTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGG
T ss_pred             CCccceecCCCEEEEEEEEecCCCC--EEEEEEcccCCCccc----CCCCceeeeeeeEeeeeecCCceEEEECcCCccc
Confidence            4667788999999999999776544  899999    66643    112222221          135679999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +| .|+|.|.|..+.   .+....|.|++++.+
T Consensus       194 ~G-~Y~C~a~N~~g~---~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          194 GG-EYLCRATNFIGV---AEKAFWLSVHGPRAA  222 (241)
T ss_dssp             CE-EEEEEEECSSCE---EEEEEEEEC------
T ss_pred             Cc-EEEEEEecCcce---EEEEEEEEecCCCCC
Confidence            95 999999998764   355789999877654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.27  E-value=9.1e-12  Score=93.15  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=68.5

Q ss_pred             cceeec-cceeEEEeCCeEEEEeecCCCCC---------CcceEEEeeCCeeeeee-ee---ccCCcEEEccCCcEEEee
Q psy9140           8 SDYEIN-TGNTFVLRGNIAVLQCNIPAYNH---------NLLLIAWLREGVSEARS-II---HSGGRYSITTAGALHIRD   73 (114)
Q Consensus         8 ~~~~v~-~~d~~v~~G~~AvL~C~~~~~~~---------~~~~vsW~kd~~~~~~~-~~---~~~~r~~v~~~G~L~I~~   73 (114)
                      +.|.++ .++..|.+|+++.|.|.+.+.+.         +...+.|+|++...... ..   ..+.|+... ++.|.|.+
T Consensus         7 ~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~   85 (349)
T 4dep_C            7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRP   85 (349)
T ss_dssp             EEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE-TTEEEESS
T ss_pred             cccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec-CCEEEEcc
Confidence            345555 45667999999999999976532         11289999998421100 11   235566554 78999999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      ++.+|+| .|+|.|.|..+.   .+..+.|.|.++..
T Consensus        86 ~~~~D~G-~Y~C~a~n~~~~---~~~~~~l~V~~~~~  118 (349)
T 4dep_C           86 TLLNDTG-NYTCMLRNTTYC---SKVAFPLEVVQKDS  118 (349)
T ss_dssp             CCGGGCE-EEEEEEECSSCE---EEEEEEEEEECCCT
T ss_pred             CChhhCE-EEEEEEecCCce---EEEEEEEEEecCCc
Confidence            9999995 999999997542   34467888886544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.27  E-value=1.4e-11  Score=89.25  Aligned_cols=97  Identities=20%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee--e-ee--------eeccCCcEEEccCC-----cEEEe
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE--A-RS--------IIHSGGRYSITTAG-----ALHIR   72 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~--~-~~--------~~~~~~r~~v~~~G-----~L~I~   72 (114)
                      ...|.+..|.+|++|+|.|.+.+...+...+.|+|..  ...  + ..        .....+||.+..++     .|.|+
T Consensus        12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   91 (257)
T 3gkz_A           12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK   91 (257)
T ss_dssp             EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence            3567788899999999999986532222289999943  111  1 00        01234799887543     59999


Q ss_pred             ecCCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEecc
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSEI  108 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~~  108 (114)
                      +|+.+|+| .|+|.|.|..+. ....+..+.|.|.++
T Consensus        92 ~v~~~DsG-~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           92 SVSSEDTA-TYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             SCCGGGCE-EEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             CCChhhCE-EEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            99999995 999999996211 233466788999876

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.27  E-value=5.8e-13  Score=98.12  Aligned_cols=91  Identities=15%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             cceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +.+.+.+.+. .+.+|.++.|.|.+.+.++| ..+.|+|++..+     . ++ .....+..|.|.+++.+|+| .|+|.
T Consensus       212 P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~~v~W~k~~~~~-----~-~~-~~~~~~~~l~i~~v~~~d~G-~Y~C~  282 (308)
T 4fom_A          212 PEVSVTGYDGNWFVGRKGVNLKCNADANPPP-FKSVWSRLDGQW-----P-DG-LLASDNTLHFVHPLTFNYSG-VYICK  282 (308)
T ss_dssp             EEECCBCCCSCEETTCCSCEEECCEEEESCE-EEEECCBSSSCC-----C-SS-CBCSTTEEECCSCCCSCCCS-EEEEE
T ss_pred             CeeEEcccceeeeeccccEEEEEEEecCCCC-cEEEEEECCeEC-----C-Cc-EEEcCCeEEEECCCChhhCE-EEEEE
Confidence            3345555444 56678899999999775433 168999998854     1 11 22222345678999999996 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.++.   .+..+.|.|++|+-
T Consensus       283 A~N~~G~---~~~~~~l~V~~~P~  303 (308)
T 4fom_A          283 VTNSLGQ---RSDQKVIYISDPPH  303 (308)
T ss_dssp             EEETTEE---EEEEEECCEECCC-
T ss_pred             EEeCCCc---EEEEEEEEEEcCCC
Confidence            9999864   46688999998864

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.93  E-value=3.7e-13  Score=87.73  Aligned_cols=93  Identities=19%  Similarity=0.354  Sum_probs=64.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee----eccCCcEEEcc-----CCcEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI----IHSGGRYSITT-----AGALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~----~~~~~r~~v~~-----~G~L~I~~v~~   76 (114)
                      +..|++..+.+|.+|.|.|.+.+...+  .+.|+|.+.  .   ++...    ...++||.+..     +..|.|++++.
T Consensus         3 ~Q~p~~v~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   80 (110)
T 1u3h_A            3 RQSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP   80 (110)
Confidence            345888899999999999998554222  789999642  1   11100    12467998853     35899999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|+| .|.|.+.|..+....-...++|.|.
T Consensus        81 ~DsG-~Y~C~~~~~~~~~~~fg~gT~l~V~  109 (110)
T 1u3h_A           81 GDSA-TYFCAASANSGTYQRFGTGTKLQVV  109 (110)
Confidence            9995 9999999853222233446666654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.27  E-value=2.3e-11  Score=89.52  Aligned_cols=98  Identities=15%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCC----cceEEEeeCC--eee---eeee----eccCCcEEEccC---CcEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHN----LLLIAWLREG--VSE---ARSI----IHSGGRYSITTA---GALHI   71 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~----~~~vsW~kd~--~~~---~~~~----~~~~~r~~v~~~---G~L~I   71 (114)
                      ..+...|.+..+.+|.+|.|.|.+.+.+..    ...+.|+|++  ..+   ++..    ...++||.+..+   +.|.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            346678899999999999999998654310    1289999953  211   1100    012579988643   48999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+.+|+| .|.|.+.|...  ...+..+.|.|..+
T Consensus        86 ~~v~~~DsG-~Y~C~~~~~~~--~~~~~~~~L~V~~~  119 (264)
T 2gjj_A           86 GSVKAEDLA-VYYCQQYSNYP--WTFGGGTRLEIKRG  119 (264)
T ss_dssp             SSCCGGGCE-EEEEEECSSSS--CEECCCEEEEEECC
T ss_pred             CCCCHHHCE-EEEEEEecCCc--cEecCCEEEEEEcC
Confidence            999999995 99999998642  23455778999876

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.27  E-value=1.8e-11  Score=98.79  Aligned_cols=80  Identities=16%  Similarity=0.239  Sum_probs=66.3

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      .+.+.|.+..+.+|..+.|.|.+.+++.+  .++|+||+..+     .        .++.|.|.+++.+|+| .|+|.|.
T Consensus       561 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~g~~i-----~--------~~~~L~i~~~~~~d~G-~Y~C~a~  624 (642)
T 1e07_A          561 TPIISPPDSSYLSGANLNLSCHSASNPSP--QYSWRINGIPQ-----Q--------HTQVLFIAKITPNNNG-TYACFVS  624 (642)
T ss_pred             cceecCCceeEEcCCcEEEEEEeccCCCC--eEEEEECCEEC-----c--------cCceEEECcccccCCe-EEEEEEE
Confidence            47788899999999999999999876544  89999998853     1        2468999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEec
Q psy9140          89 HKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.++.   .+..+.|.|+.
T Consensus       625 N~~G~---~~~s~~l~V~v  640 (642)
T 1e07_A          625 NLATG---RNNSIVKSITV  640 (642)
T ss_pred             ecccC---cceeEEEEEEE
Confidence            99876   45677787764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=2.2e-12  Score=97.83  Aligned_cols=81  Identities=9%  Similarity=0.077  Sum_probs=61.4

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEE--E--------ccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYS--I--------TTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~--v--------~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      .+.+|.++.|.|.+.+++.+  .++|.|++..+     ..+.+..  +        ..+|.|.|.+++.+|+| .|+|.|
T Consensus       257 ~~~~g~~v~l~C~~~g~P~p--~i~W~~~g~~l-----~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a  328 (347)
T 2ifg_A          257 TAVEMHHWCIPFSVDGQPAP--SLRWLFNGSVL-----NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG-NYTLLA  328 (347)
T ss_dssp             CCEESSSEEEEEEEEEESCC--EEEEEETTEEC-----CCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCE-EEEEEE
T ss_pred             cCccCceEEEEEEeeecCCC--cEEEEeCCEEC-----CCCcceeeEEEeecCCCcccceEEEECCCCcccCc-eEEEEE
Confidence            45689999999999887555  89999999864     2222222  1        12677999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEeccc
Q psy9140          88 THKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .|.++.   .+..+.|.|.+++
T Consensus       329 ~N~~G~---~~~~~~l~V~~~P  347 (347)
T 2ifg_A          329 ANPFGQ---ASASIMAAFMDNP  347 (347)
T ss_dssp             EETTEE---EEEEEEECSCCCC
T ss_pred             ecCCCc---eeeEEEEEecCCC
Confidence            999764   4567788877653

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.27  E-value=7.6e-12  Score=98.81  Aligned_cols=100  Identities=13%  Similarity=0.272  Sum_probs=72.0

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeee--eeee-eccCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSE--ARSI-IHSGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~--~~~~-~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|...|.+..+.+|+++.|.|.+.+.+.+. .++|+|++..+  .... ....+++....++.|.|.+++.+|+| .|
T Consensus       211 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y  288 (524)
T 2ec8_A          211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG-VF  288 (524)
T ss_dssp             CCEEECSCSEEEEETTSCEEEEEEEEESSTTC-EEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCE-EE
T ss_pred             CCcEEecCCcceEEcCCcEEEEEEEecCCCcE-EEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCE-EE
Confidence            35688889999999999999999997654331 59999999862  1100 01111112334689999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|.|.|..+.   .+..+.|.|.+++.+
T Consensus       289 ~C~a~n~~g~---~~~~~~l~V~~~p~~  313 (524)
T 2ec8_A          289 MCYANNTFGS---ANVTTTLEVVDKGFI  313 (524)
T ss_dssp             EEEEECSSCE---EEEEEEEEEESSCEE
T ss_pred             EEEEEecCCc---eEEEEEEEEeccCce
Confidence            9999998654   344788999877654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.27  E-value=6.4e-11  Score=85.99  Aligned_cols=93  Identities=19%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee-------eccCC-cEEEccCCc--EEEeecCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI-------IHSGG-RYSITTAGA--LHIRDTGM   76 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~-------~~~~~-r~~v~~~G~--L~I~~v~~   76 (114)
                      ..|+...+.+|.+|.|.|.+++...+  .+.|+|..  ..   ++...       ....+ ||.+..++.  |.|++|+.
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~~--~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~   83 (253)
T 3to4_D            6 QNPRWRLVPRGQAVNLRCILKNSQYP--WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (253)
T ss_dssp             EECSEEEEESSCCEEEEEECSCTTCC--CEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESC
T ss_pred             eCCCeEEEeCCCcEEEEEEeCCCCcc--eEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCCh
Confidence            45778899999999999998654333  78998831  11   11000       00123 999876555  99999999


Q ss_pred             CCCCeeeEEEEeeccC---CcEEeCCCeEEEEec
Q psy9140          77 EDSYIRYYCQTTHKLT---GERKISPPSQVMVSE  107 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~---~~~~~s~~a~L~V~~  107 (114)
                      +|+| .|.|.+.+..+   .....+..+.|.|..
T Consensus        84 ~DsG-~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~  116 (253)
T 3to4_D           84 SQGR-TLYCTSSADHWTNTGQLYFGEGSKLTVLE  116 (253)
T ss_dssp             SSCE-EEEEEEECSCCSTTCCEEECCCEEEEEES
T ss_pred             hhCe-EEEEEEecCCCCcccceEECCCEEEEEec
Confidence            9995 99999997643   233445677888863

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.27  E-value=4.8e-12  Score=90.05  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             eccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeCCeee----eee---------------------eeccCCcEEEcc
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLREGVSE----ARS---------------------IIHSGGRYSITT   65 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~~~~----~~~---------------------~~~~~~r~~v~~   65 (114)
                      ..+++..|.+|++|.|.|.+.+.. .+.+.+.|+|++...    ++.                     .....+|+.+..
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            445578899999999999985411 122289999997532    111                     012357887765


Q ss_pred             --CCcEEEeecCCCCCCeeeEEEEeeccCCcE--EeCCCeEEEEecc
Q psy9140          66 --AGALHIRDTGMEDSYIRYYCQTTHKLTGER--KISPPSQVMVSEI  108 (114)
Q Consensus        66 --~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~--~~s~~a~L~V~~~  108 (114)
                        ++.|.|.+|+.+|+| .|+|.|.|......  ..+....|.|..+
T Consensus        87 ~~~~~L~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGG-RYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             TTSCCEEECSCCGGGCE-EEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             CCcceEEEeeCChhhCe-EEEEEeccCccCCcccccceeEEEEEecc
Confidence              468999999999995 99999999754310  1133677888764

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=99.27  E-value=3e-11  Score=80.50  Aligned_cols=100  Identities=19%  Similarity=0.304  Sum_probs=66.1

Q ss_pred             ccee-eccceeEEEeCCeEEEEeecCCC-----CCCcceEEEeeCCee-----eeeee-------eccCCcEEEccC---
Q psy9140           8 SDYE-INTGNTFVLRGNIAVLQCNIPAY-----NHNLLLIAWLREGVS-----EARSI-------IHSGGRYSITTA---   66 (114)
Q Consensus         8 ~~~~-v~~~d~~v~~G~~AvL~C~~~~~-----~~~~~~vsW~kd~~~-----~~~~~-------~~~~~r~~v~~~---   66 (114)
                      +.|. ..|+...+.+|.+|.|.|.+...     ......+.|+|....     ++...       ....+||.+..+   
T Consensus         6 ~~~~~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~   85 (132)
T 1nko_A            6 KDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQT   85 (132)
T ss_dssp             GGCEEEECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGG
T ss_pred             CCeEEeCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCC
Confidence            4454 45888899999999999998421     111128999997642     22111       112489998642   


Q ss_pred             --CcEEEeecCCCCCCeeeEEEEeeccCCcEEe-CCCeEEEEeccc
Q psy9140          67 --GALHIRDTGMEDSYIRYYCQTTHKLTGERKI-SPPSQVMVSEIA  109 (114)
Q Consensus        67 --G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~-s~~a~L~V~~~~  109 (114)
                        .+|.|++|+.+|+| .|.|.+.+.-. .... ....+|.|.+++
T Consensus        86 ~~~sL~I~~v~~~DsG-~Y~C~v~~~~~-~~~~~~~~~~l~V~~~~  129 (132)
T 1nko_A           86 KNCTLSIRDARMSDAG-RYFFRMEKGNI-KWNYKYDQLSVNVTALT  129 (132)
T ss_dssp             TBCCEEECSCCGGGCE-EEEEEEEETTE-EEECTTSCEEEEEECCC
T ss_pred             CceEEEEcccCcccCe-eEEEEEEcCCC-cccccCCceEEEecccC
Confidence              37999999999995 99999998521 1112 347888888765

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.26  E-value=2.1e-11  Score=81.32  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCC--CcceEEEeeCC--e---eeeeee----eccCCcEEEccC---CcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNH--NLLLIAWLREG--V---SEARSI----IHSGGRYSITTA---GALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~--~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~~---G~L~I~~v~   75 (114)
                      ....|+...|.+|.+|.|.|.+.+...  ....+.|+|..  .   .++...    ....+||.+..+   ..|.|++++
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~   83 (126)
T 4ffy_L            4 LTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVE   83 (126)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             EEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCC
Confidence            345677889999999999999865431  01278999953  1   111100    112578988643   369999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .+|+| .|.|.+.|..  ....+..++|.|++..
T Consensus        84 ~~DsG-~Y~C~~~~~~--~~~fg~gT~L~V~~~g  114 (126)
T 4ffy_L           84 TDDAA-TYYCQQNNED--PYTFGGGTKLEIKGGG  114 (126)
T ss_dssp             GGGCE-EEEEEECSSS--SCEECCCEEEEEEC--
T ss_pred             HHHCE-EEEEEEecCC--CcEECCCEEEEEecCC
Confidence            99995 9999999863  3346778999999764

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.26  E-value=2.3e-11  Score=78.72  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee-------eeeee-----eccCCcEEEcc-----CCcEEEeecC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-------EARSI-----IHSGGRYSITT-----AGALHIRDTG   75 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-------~~~~~-----~~~~~r~~v~~-----~G~L~I~~v~   75 (114)
                      .|....+.+|.+|.|.|.+.+.... ..+.|+|.+..       +++..     ...++||.+..     +++|.|++++
T Consensus         3 ~~~~v~~~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   81 (116)
T 2or8_A            3 SYVEVKGVVGHPVTLPCTYSTYRGI-TTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSV   81 (116)
T ss_dssp             CCEEEEEETTSCEEECCBCCCTTCC-CCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCC
T ss_pred             CcceEEEEeCCcEEEEEEeeCCCCC-cEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCC
Confidence            4567889999999999998542111 17899998621       11110     23468998742     3689999999


Q ss_pred             CCCCCeeeEEEEeecc
Q psy9140          76 MEDSYIRYYCQTTHKL   91 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l   91 (114)
                      .+|+| .|.|.+.+..
T Consensus        82 ~~DsG-~Y~C~v~~~~   96 (116)
T 2or8_A           82 ESDSG-LYCCRVEIPG   96 (116)
T ss_dssp             GGGCE-EEEEEECCSS
T ss_pred             cccCE-EEEEEEEcCC
Confidence            99995 9999999864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.26  E-value=2.7e-11  Score=87.84  Aligned_cols=101  Identities=16%  Similarity=0.244  Sum_probs=69.9

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeee---------eeccCCcEEEccCC-----
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARS---------IIHSGGRYSITTAG-----   67 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~---------~~~~~~r~~v~~~G-----   67 (114)
                      .+.|...+.+..|.+|++|.|.|.+.+...+...+.|+|..  ..   ++..         .....+||.+..++     
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            35678889999999999999999986532121279999743  11   1100         01124699987433     


Q ss_pred             cEEEeecCCCCCCeeeEEEEeecc---------CCcEEeCCCeEEEEecc
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKL---------TGERKISPPSQVMVSEI  108 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l---------~~~~~~s~~a~L~V~~~  108 (114)
                      .|.|++++.+|+| .|.|.+.|..         ......+..+.|.|.++
T Consensus        86 ~L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~  134 (256)
T 3juy_B           86 YMELRSLRSADTA-VYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSG  134 (256)
T ss_dssp             EEEECSCCGGGCE-EEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSC
T ss_pred             EEEECCCCcccCE-EEEEeEEeccccccccccccceeEECCceEEeecCC
Confidence            4999999999995 9999999961         12334566788999875

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.26  E-value=3.5e-11  Score=85.92  Aligned_cols=85  Identities=20%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCC-Ccc--eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNH-NLL--LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~-~~~--~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +...+ +..+.+|.++.|.|.+.+.+. +..  .++|++++..+.     .     -..++.|.|.+++.+|+| .|+|.
T Consensus       174 ~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~-----~-----~~~~~~L~i~~v~~~d~G-~Y~C~  241 (262)
T 3rjd_A          174 LNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLR-----G-----RNTSSEYQILTARREDSG-LYWCE  241 (262)
T ss_dssp             EEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEE-----E-----EESCCEEEESSCCGGGCE-EEEEE
T ss_pred             EeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEec-----c-----cCCCceEEEEEechhhCe-EEEEE
Confidence            44444 667999999999999977654 322  579999998641     1     123578999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEe
Q psy9140          87 TTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |.|..+...+.|....|.|+
T Consensus       242 a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          242 AATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             EEETTSSCEEECCCEEECEE
T ss_pred             EEcccCceEEecCCeEEEEe
Confidence            99999877777888888775

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.26  E-value=2.2e-11  Score=79.54  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCC----CcceEEEeeCC--e---eeeeee----eccCCcEEEccCC---cEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNH----NLLLIAWLREG--V---SEARSI----IHSGGRYSITTAG---ALHIRDT   74 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~----~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~~G---~L~I~~v   74 (114)
                      ...|++..+.+|.+|.|.|.+.+...    ....+.|+|..  .   .++...    ....+||.+..++   .|.|+++
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   84 (114)
T 1eeq_A            5 TQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSL   84 (114)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCC
Confidence            44578889999999999999855431    11278999964  2   121100    0125799886433   7999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +.+|+| .|.|.+.+.  +...-...++|.|+
T Consensus        85 ~~~DsG-~Y~C~~~~~--~~~~fg~GT~l~V~  113 (114)
T 1eeq_A           85 QAEDVA-VYYCQQYYS--HPYSFGQGTKLEIK  113 (114)
T ss_dssp             CGGGCE-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             CcccCE-EEEEEEeeC--CeEEECCCEEEEEe
Confidence            999995 999999985  33345668888885

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.26  E-value=1.6e-11  Score=86.29  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=63.4

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee--------eccCCcEEEccC-----CcEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI--------IHSGGRYSITTA-----GALHIRD   73 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~--------~~~~~r~~v~~~-----G~L~I~~   73 (114)
                      .+|++..+.+|.+|.|.|.+.+...+...+.|+|++  ...   +...        ....+||.+..+     +.|.|++
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   84 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNS   84 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECC
Confidence            457888999999999999996643211289999863  221   1100        012579988642     2899999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+.+|+| .|+|.|.|..    ..+..+.|.|..
T Consensus        85 v~~~D~G-~Y~C~~~~~~----~~~~~~~l~V~~  113 (210)
T 3d9a_H           85 VTTEDTA-TYYCANWDGD----YWGQGTLVTVSA  113 (210)
T ss_dssp             CCGGGCE-EEEEEETTSS----CBCCCEEEEECC
T ss_pred             CCcccCE-EEEEEEecCc----ccccceEEEecc
Confidence            9999995 9999999963    134456787763

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.26  E-value=8.1e-12  Score=86.93  Aligned_cols=92  Identities=15%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             eeEEEeCCeEEEEeecCCCCCC-cc-eEEEeeCCeeeeeee-------eccCCcEEE--ccCCcEEEeecCCCCCCeeeE
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHN-LL-LIAWLREGVSEARSI-------IHSGGRYSI--TTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd~~~~~~~~-------~~~~~r~~v--~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      ...|.+|++|.|.|.+.+.... +. .+.|.|++..+....       ..-.+|..+  ..++.|.|.+|+.+|+| .|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G-~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEG-TYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCE-EEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCe-EEE
Confidence            4678999999999998543211 22 899999988652100       011345544  34679999999999995 999


Q ss_pred             EEEeeccCCcEEe--CCCeEEEEecc
Q psy9140          85 CQTTHKLTGERKI--SPPSQVMVSEI  108 (114)
Q Consensus        85 C~a~n~l~~~~~~--s~~a~L~V~~~  108 (114)
                      |.|.|..+.....  +....|.|..+
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             EEEEcCCCCccccccccEEEEEEcCC
Confidence            9999976543221  33567777664

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.26  E-value=3.4e-11  Score=86.07  Aligned_cols=96  Identities=20%  Similarity=0.340  Sum_probs=66.1

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee--e-eee---------eccCCcEEEcc-----CCcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE--A-RSI---------IHSGGRYSITT-----AGALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~--~-~~~---------~~~~~r~~v~~-----~G~L~I   71 (114)
                      ..+|+...+.+|.+|.|.|.+.++......+.|+|++  ..+  + ...         ....+||.+..     ++.|.|
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (225)
T 1op3_H            4 LVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQM   83 (225)
T ss_dssp             EEEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEE
Confidence            3467788999999999999986543111279999864  221  1 000         01257998864     358999


Q ss_pred             eecCCCCCCeeeEEEEeeccC-----CcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLT-----GERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~-----~~~~~s~~a~L~V~~  107 (114)
                      ++++.+|+| .|.|.+.|..+     .....+..+.|.|..
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           84 HKMRVEDTA-IYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             CSCCGGGCE-EEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             CCCChhhCE-EEEEEEecCCCccccccceeecCCEEEeccc
Confidence            999999995 99999999753     111234567888885

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.26  E-value=4.8e-12  Score=88.00  Aligned_cols=85  Identities=18%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +...| +..+.+|.++.|.|.+.+.  + ..+.|.|++..+.     ...+ ....++.|.|.+|+.+|+| .|+|.|.|
T Consensus        97 i~~~p-~~~v~~G~~v~l~C~~~~~--~-~~~~w~k~g~~~~-----~~~~-~~~~~~~L~i~~v~~~D~G-~Y~C~a~n  165 (184)
T 2gi7_A           97 LSAQP-GPAVSSGGDVTLQCQTRYG--F-DQFALYKEGDPAP-----YKNP-ERWYRASFPIITVTAAHSG-TYRCYSFS  165 (184)
T ss_dssp             EEEEC-CCSSCCTTCEEEEEECSSC--C-CEEEEEECCCCTT-----SCCC-CEEEEESSSEEEETTCCSE-EEEEEEEC
T ss_pred             EEeCC-CceecCCCcEEEEEEcCCC--C-cEEEEEECCCcCc-----ceec-CCCceEEEEEccCCccCCe-EEEEEEEe
Confidence            55555 5678899999999998542  2 2789999998541     1222 2334789999999999995 99999999


Q ss_pred             ccCCc--EEeCCCeEEEE
Q psy9140          90 KLTGE--RKISPPSQVMV  105 (114)
Q Consensus        90 ~l~~~--~~~s~~a~L~V  105 (114)
                      .....  ...|....|.|
T Consensus       166 ~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          166 SRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             TTSTTBCCCCCCCEEEEC
T ss_pred             CCCCcccCCCCCcEEEEe
Confidence            75321  12344666655

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.26  E-value=2.2e-11  Score=79.96  Aligned_cols=95  Identities=21%  Similarity=0.265  Sum_probs=63.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeeeeccCCcEEEcc-----CCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSIIHSGGRYSITT-----AGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~~~~~~r~~v~~-----~G~L~I~~v~~~D~gg~   82 (114)
                      ....|.+..+.+|.+|.|.|.+.+...+...+.|+|+.  ..... ....++||.+..     +..|.|++++.+|+| .
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~-~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG-~   80 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEE-SISKGGRYVETVNSGSKSFSLRINDLTVEDGG-T   80 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCE-ECCCBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceE-eEEeCCCEEEEEeCCCCEEEEEECCCChhhCE-E
Confidence            34568888999999999999985533111278999963  22100 123467998742     347999999999995 9


Q ss_pred             eEEEEeecc---C------CcEEeCCCeEEEEe
Q psy9140          83 YYCQTTHKL---T------GERKISPPSQVMVS  106 (114)
Q Consensus        83 Y~C~a~n~l---~------~~~~~s~~a~L~V~  106 (114)
                      |.|.+.|..   +      ....-...++|.|+
T Consensus        81 Y~C~~~~~~~~~~~~~~~~~~~~fg~GT~L~V~  113 (113)
T 1sq2_N           81 YRCGLGVAGGYCDYALCSSRYAECGDGTAVTVN  113 (113)
T ss_dssp             EEEEECBTTTBCCGGGGGSTTCCBCCCEEEEEC
T ss_pred             EEEEEEeCCCccceeEeehhhhhcCCceEEEeC
Confidence            999999831   0      11223447777764

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.26  E-value=1.9e-11  Score=88.14  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee----e---------eccCCcEEEc-----cCCc
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS----I---------IHSGGRYSIT-----TAGA   68 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~----~---------~~~~~r~~v~-----~~G~   68 (114)
                      +.+.+.+.+..+.+|.++.|.|.+......+. .+.|+|++......    .         ..-.+|+.+.     .++.
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            45778889999999999999999852212233 89999976532100    0         0113777774     3489


Q ss_pred             EEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |.|.+|+.+|+| .|+|.|.|..... ..+....|.|.
T Consensus        86 L~I~~v~~~D~G-~Y~C~~~~~~~~~-~~~~~~~l~V~  121 (268)
T 3mj6_A           86 LLLQDVQKADEG-IYTCEIRLKNESM-VMKKPVELWVL  121 (268)
T ss_dssp             EEECSCCGGGCE-EEEEEEEETTCCC-EEEEEEEEEEE
T ss_pred             EEECCCCHhHCE-EEEEEEEecCCcc-eEEEEEEEEEe
Confidence            999999999995 9999999864332 23335566664

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.26  E-value=2.8e-11  Score=86.92  Aligned_cols=94  Identities=18%  Similarity=0.278  Sum_probs=65.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee---------eccCCcEEEcc-----CCcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI---------IHSGGRYSITT-----AGALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~---------~~~~~r~~v~~-----~G~L~I   71 (114)
                      ..+|++..+.+|.+|.|.|.+.+.......+.|+|++  ..+   +...         ....+||.+..     ++.|.|
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (227)
T 1mju_H            4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (227)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence            4568888999999999999986543111279999964  221   1000         01257998863     358999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ++|+.+|+| .|.|.+.|..  ....+..++|.|..
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~--~~~~~~~~~L~V~~  116 (227)
T 1mju_H           84 SSLTSDDSA-VYYCANKLGW--FPYWGQGTLVTVSA  116 (227)
T ss_dssp             CSCCGGGCE-EEEEEEEETT--EEEECCCEEEEECS
T ss_pred             CCCCcccCE-EEEEEECCCC--ceEEcCcEEEEEcC
Confidence            999999995 9999999852  22344567888875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.26  E-value=5.6e-13  Score=101.18  Aligned_cols=94  Identities=14%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCe-eeEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYI-RYYC   85 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg-~Y~C   85 (114)
                      .+.+.+.|++..+.+|+++.|.|.+.+.+.+  .+.|++++..+.    ....++....+|.|.|.+++.+|+ | .|+|
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~i~W~~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~-G~~Y~C  230 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLE--QAGWILTELEQS----ATVMKSGGLPSLGLTLANVTSDLN-RKNVTC  230 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCC--CCCEEESCCCSS----EEECCCCCSSEEEEEEESCCSTTT-TCCEEE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCC--EEEEEcCCceee----cccccceecccceEEEeeCChHHC-CCeEEE
Confidence            4668889999999999999999999776544  789999987642    122344456688999999999999 7 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEecccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .|.|..+.   .+..+.|.|..++.
T Consensus       231 ~a~n~~g~---~~~~~~l~V~~~P~  252 (347)
T 2ifg_A          231 WAENDVGR---AEVSVQVNVSFPAS  252 (347)
T ss_dssp             CCEETTEE---CCEEECCCCBEEEE
T ss_pred             EEEcCCCC---EEEEEEEEEcCCCe
Confidence            99998643   34466777766655

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.26  E-value=1.3e-11  Score=86.38  Aligned_cols=88  Identities=15%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEee----CCeeeeeeeeccCC-cE--------EEccCCcEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR----EGVSEARSIIHSGG-RY--------SITTAGALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k----d~~~~~~~~~~~~~-r~--------~v~~~G~L~I~~v~~~D~   79 (114)
                      .+.+..+.+|.++.|.|.+.+++.+  .+.|+|    ++..+.    ..+. +.        ....++.|.|.+++.+|+
T Consensus       124 ~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  197 (231)
T 3ojm_B          124 LPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYG----PDGLPYLKVLKHSGINSSNAEVLALFNVTEADA  197 (231)
T ss_dssp             CSCCEEEETTCCEEEECCEECSSCC--EEEEEEECCBTTBSBC----TTSCBCEEEEEECSTTCSCTTEEEECSCCGGGC
T ss_pred             cCCceEEEeCCcEEEEEEEecCCCC--EEEEEECCCCCCcccc----CCCcceEeEecccccccCCccEEEEecCCHHHC
Confidence            3677889999999999999776544  899999    665431    1111 11        122346799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                       |.|+|.|.|..+.   .+..+.|.|.+++.
T Consensus       198 -G~Y~C~a~n~~g~---~~~~~~l~V~~~p~  224 (231)
T 3ojm_B          198 -GEYICKVSNYIGQ---ANQSAWLTVLPKQQ  224 (231)
T ss_dssp             -EEEEEEEEETTEE---EEEEEEEEEECCC-
T ss_pred             -eEEEEEEEeccce---EeeEEEEEEecCCC
Confidence             5999999998754   46678899987654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.26  E-value=5.2e-13  Score=99.20  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=0.0

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      +..++...|++..+.+|+++.|.|.+.+.... ..+.|+||+..+     ..+.|+.+ .++.|.|.+++.+|+| .|+|
T Consensus         7 ~p~p~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~k~g~~~-----~~~~~~~~-~~~~L~i~~v~~~D~G-~Y~C   78 (334)
T 1ry7_B            7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPM-GPTVWVKDGTGL-----VPSERVLV-GPQRLQVLNASHEDSG-AYSC   78 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCcCcEEEecCCcEEEEeeCCCCCCC-cceEEEECCeeC-----CCcccEEe-ccceEEEeecccccCE-EEEE
Confidence            33455567999999999999999999764211 189999999853     45678876 4789999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEecc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|.|. +.   .+....|.|.++
T Consensus        79 ~a~n~-~~---~~~~~~l~V~~~   97 (334)
T 1ry7_B           79 RQRLT-QR---VLCHFSVRVTDA   97 (334)
T ss_dssp             -----------------------
T ss_pred             EEEeC-Ce---EEEEEEEEEecc
Confidence            99997 32   455677777654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.25  E-value=2e-12  Score=93.93  Aligned_cols=96  Identities=16%  Similarity=0.197  Sum_probs=67.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee--eeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS--IIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~--~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      .+.+...|.+..+.+|.++.|.|.+.+.+.+ ..+.|.+++..+...  .....+++.  .++.|.|.+++.+|+ |.|+
T Consensus       186 ~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~-G~Y~  261 (292)
T 4dkd_C          186 PPALTLVPAELVRIRGEAAQIVCSASSVDVN-FDVFLQHNNTKLAIPQQSDFHNNRYQ--KVLTLNLDQVDFQHA-GNYS  261 (292)
T ss_dssp             SCEEEEESSCBCCCSSSCEEEEEEEEESSSC-CEEECCBSSCCCCCCBEEEEETTEEE--EEEEEEESSCCTTSC-EEEE
T ss_pred             CCeEEccCCceeEecCCCEEEEEEecCCCCc-eEEEEeCCCcccccCccceeccceee--eEEEEEECccChhcC-eEEE
Confidence            4557788888888899999999999654322 278999998754211  011123332  346899999999999 5999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |.|.|.++.   .+..+.|.|+...
T Consensus       262 C~a~N~~g~---~~~~~~l~V~~~~  283 (292)
T 4dkd_C          262 CVASNVQGK---HSTSMFFRVVESA  283 (292)
T ss_dssp             EEEECSSCE---EEEEEEECC----
T ss_pred             EEEecCCCC---ceeEEEEEEeeCC
Confidence            999999864   4567788877543

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=99.25  E-value=4.2e-11  Score=78.46  Aligned_cols=96  Identities=21%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee---eeeee-eccCCcEEEc--------cCCcEEEeecCC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS---EARSI-IHSGGRYSIT--------TAGALHIRDTGM   76 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~---~~~~~-~~~~~r~~v~--------~~G~L~I~~v~~   76 (114)
                      .+...|....+.+|.+|.|.|.+.+....+ .+.|+|++..   +++.. ....+||...        .+..|.|++++.
T Consensus         9 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~-~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   87 (120)
T 2yz1_A            9 KVTQPEKSVSVAAGDSTVLNCTLTSLLPVG-PIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTP   87 (120)
T ss_dssp             CEECCSSEEEECTTCCEEECCEESCCCSCC-CEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCG
T ss_pred             EEECCCceEEEeCCCCEEEEeEECCCCCCc-EEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCH
Confidence            344567888999999999999986532111 7999998632   22211 1112355321        125799999999


Q ss_pred             CCCCeeeEEEEeeccC--C--cEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLT--G--ERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~--~--~~~~s~~a~L~V~  106 (114)
                      +|+| .|.|.+.+.-.  +  ...-...++|.|+
T Consensus        88 ~DsG-~Y~C~~~~~~~~~~~~~~~fg~GT~L~V~  120 (120)
T 2yz1_A           88 EDAG-TYYCVKFQKGPSEPDTEIQSGGGTEVYVL  120 (120)
T ss_dssp             GGCE-EEEEEEEECCSSSSCEEEEECCCEEEEEC
T ss_pred             HHCE-EEEEEEEcCCCCCCcceEEeCCcEEEEEC
Confidence            9995 99999998531  1  2234557777763

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.25  E-value=2.9e-11  Score=85.91  Aligned_cols=95  Identities=20%  Similarity=0.291  Sum_probs=64.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee--------eccCCcEEEcc--C---CcEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI--------IHSGGRYSITT--A---GALHIRD   73 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~--------~~~~~r~~v~~--~---G~L~I~~   73 (114)
                      .+|++..+.+|.+|.|.|.+.+...+...+.|+|++  ..   +++..        ....+||.+..  +   ..|.|++
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (215)
T 1c5d_H            5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS   84 (215)
T ss_dssp             EEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESS
T ss_pred             EcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECC
Confidence            467888999999999999986643211279999863  21   11100        01247998863  2   3899999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ++.+|+| .|.|.+.|..+.....+..++|.|..
T Consensus        85 v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           85 LQTEDTA-IYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             CCGGGCE-EEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             CCcccCE-EEEEEEecCCcccceEcCCEEEEecC
Confidence            9999995 99999998642111234467888874

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=99.25  E-value=1.1e-10  Score=76.12  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCC-----eeeeeee------e--ccCCcEEEcc---CC--cEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREG-----VSEARSI------I--HSGGRYSITT---AG--ALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~-----~~~~~~~------~--~~~~r~~v~~---~G--~L~I~~   73 (114)
                      +|....+.+|.+|.|.|.......... .+.|+|..     ..++...      .  ...+||.+..   ++  .|.|++
T Consensus         4 q~~~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   83 (116)
T 3bj9_1            4 QPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISE   83 (116)
T ss_dssp             CCSEEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCcEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECC
Confidence            466788999999999999854211112 79999853     1222210      0  1247998753   35  899999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      ++.+|+| .|.|.+.+.-  ...-...++|.|.+.
T Consensus        84 ~~~~DsG-~Y~C~~~~~~--~~~fg~gT~L~V~~~  115 (116)
T 3bj9_1           84 LQPEDEA-MYYCAMGARS--THVFGSGTQLTVLSA  115 (116)
T ss_dssp             CCGGGCE-EEEEEECCSS--CCEECCCEEEEEESC
T ss_pred             CChhHCE-EEEEEEeCCC--CcEECCCEEEEEecC
Confidence            9999995 9999999852  224566889999875

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.25  E-value=5.5e-11  Score=84.05  Aligned_cols=96  Identities=21%  Similarity=0.371  Sum_probs=65.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeeee-----------ccCCcEEEcc---CC--cE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSII-----------HSGGRYSITT---AG--AL   69 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~~-----------~~~~r~~v~~---~G--~L   69 (114)
                      ..+|+...+.+|.+|.|.|.+.+...+...+.|+|++  ..   ++....           .-.+||.+..   +|  .|
T Consensus         4 v~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   83 (220)
T 1pz5_B            4 VEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYL   83 (220)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             EeccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEE
Confidence            3567888999999999999986542111289999964  21   111000           0147998863   23  89


Q ss_pred             EEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|.+++.+|+| .|.|.+.|..+.....+..+.|.|..
T Consensus        84 ~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~l~V~~  120 (220)
T 1pz5_B           84 QMNNLRAEDTG-IYYCTRGGAVGAMDYWGQGTSVTVSS  120 (220)
T ss_dssp             EECSCCGGGCE-EEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             EEccCCHHHCE-EEEEEEecCCcccceECCCEEEEEcc
Confidence            99999999995 99999999643222334577888873

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.25  E-value=9.3e-11  Score=78.12  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=64.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee---eeeee-eccCCcEEEc--------cCCcEEEeecCCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS---EARSI-IHSGGRYSIT--------TAGALHIRDTGMEDS   79 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~---~~~~~-~~~~~r~~v~--------~~G~L~I~~v~~~D~   79 (114)
                      ..|+...+.+|.+|.|.|.+.+.... ..+.|+|++..   ++... ....+||...        .+..|.|.+++.+|+
T Consensus         8 q~p~~~~v~~G~~vtL~C~~~~~~~~-~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   86 (127)
T 2jju_A            8 QPEKSVSVAAGESATLRCAMTSLIPV-GPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA   86 (127)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCSC-CCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGC
T ss_pred             eeCCeEEEeCCCCEEEEEEEeCCCCC-CEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHC
Confidence            35678899999999999998654211 17999997632   22211 0112477642        256899999999999


Q ss_pred             CeeeEEEEeeccCC---cEEeCCCeEEEEecc
Q psy9140          80 YIRYYCQTTHKLTG---ERKISPPSQVMVSEI  108 (114)
Q Consensus        80 gg~Y~C~a~n~l~~---~~~~s~~a~L~V~~~  108 (114)
                      | .|.|.+.|.-..   ...-...++|.|.+.
T Consensus        87 G-~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~  117 (127)
T 2jju_A           87 G-TYYCVKFRKGSPDDVEFKSGAGTELSVRAK  117 (127)
T ss_dssp             E-EEEEEEEECCSSSCEEEEECCCEEEEEEC-
T ss_pred             E-EEEEEEEcCCCCccceEEeCCCeEEEEeec
Confidence            5 999999985221   223456789999854

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=99.25  E-value=1.3e-10  Score=79.52  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC---CeeeeeeeeccCCcEEEccCC---cEEEeecCCCCC
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE---GVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd---~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      ..+.....|....+.+|++|.|.|...+. ..  .+.|+|.   +..+.. .....+||.+..++   .|.|++++.+|+
T Consensus        17 ~~~~v~Q~p~~~~v~~G~svtL~C~~s~~-~~--~v~Wyrq~~~g~~~~~-l~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   92 (134)
T 3kg5_A           17 ACSRIWQSPRFIARKRGFTVKMHCYMNSA-SG--NVSWLWKQEMDENPQQ-LKLEKGRMEESQNESLATLTIQGIRFEDN   92 (134)
T ss_dssp             -CCCCEEECSEEEEETTCCEEEEEECCCT-TC--CCEEEEESSSSSCCEE-CCCCTTTEEEEECSSEEEEEECSCCTTTC
T ss_pred             ccCEEEEeCCEEEEeCCCCEEEEEEECCC-Cc--eEEEEEECCCCCCcEE-EEEECCeEEEEccCCEEEEEECCCCcCcC
Confidence            34556677889999999999999998653 22  6899997   332211 11246899876443   699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                       |.|.|.+.+...........++|.|...+.+
T Consensus        93 -g~Y~C~~~~~~~~~~~fg~GT~L~V~~~p~~  123 (134)
T 3kg5_A           93 -GIYFCQQKCNNTSEVYQGCGTELRVMGFSTL  123 (134)
T ss_dssp             -EEEEEEEECTTTCCEEECCCEEEEEECC---
T ss_pred             -EEEEEEEEcCCCCceEECCCEEEEEecCCCH
Confidence             5999999986323444577899999976544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.24  E-value=3.3e-11  Score=89.14  Aligned_cols=94  Identities=18%  Similarity=0.273  Sum_probs=67.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCeeeeeee-------eccCCcEEEcc---CCcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVSEARSI-------IHSGGRYSITT---AGALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~~~~~~-------~~~~~r~~v~~---~G~L~I~~v~~~   77 (114)
                      +...|.+..+.+|.++.|.|.+.+.+ +  .+.|+|  ++..+....       ...++||.+..   ++.|.|.+++.+
T Consensus       165 ~~~~p~~~~v~~G~~v~L~C~~~~~~-~--~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  241 (282)
T 1qok_A          165 LTQSPAIMSASPGEKVTITCSASSSV-S--YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAE  241 (282)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCC-S--CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EecCCCEEEEcCCCcEEEEEEecCCC-c--eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChh
Confidence            45567788899999999999997765 4  789999  555321100       01257898753   347999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |+| .|+|.|.|.  +....+..++|.|+.+.
T Consensus       242 DsG-~Y~C~a~~~--~~~~fg~gt~l~V~~~~  270 (282)
T 1qok_A          242 DAA-TYYCQQRSS--YPLTFGAGTKLELKRAA  270 (282)
T ss_dssp             GCE-EEEEEECSS--SSCEECCCEEEEEC---
T ss_pred             HCE-EEEEEEeeC--CCceEeCCEEEEEeccc
Confidence            995 999999985  33356778999998543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.24  E-value=3.2e-11  Score=90.18  Aligned_cols=86  Identities=14%  Similarity=0.130  Sum_probs=62.1

Q ss_pred             ccceeEEEeCCeEEEEeec-----CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNI-----PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~-----~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      .|.+..+.+|.++.|.|.+     .+.+.+  .+.|+||+..+     ....++... +..|.|.+++.+|+| .|+|.|
T Consensus       126 ~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~--~v~W~k~~~~l-----~~~~~~~~~-~~~L~i~~v~~~d~G-~Y~C~a  196 (349)
T 4dep_C          126 LPVHKLYIEYGIQRITCPNVDGYFPSSVKP--TITWYMGCYKI-----QNFNNVIPE-GMNLSFLIALISNNG-NYTCVV  196 (349)
T ss_dssp             CCEEEEETTCSEEEEECCSCTTSSCTTSCC--EEEEEETTEEC-----CSCSSEEEE-TTEEEEESCCGGGCE-EEEEEE
T ss_pred             cCcceeeecCccEEEEcCCCcccccCCCCc--eEEEeeCCEEC-----CCccceeec-CCEEEEeeeeecCCc-EEEEEE
Confidence            3567788999999999975     332222  89999999853     223444433 356999999999995 999999


Q ss_pred             eeccCCcE-EeCCCeEEEEec
Q psy9140          88 THKLTGER-KISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~-~~s~~a~L~V~~  107 (114)
                      .|..++.. ..+....|.|.+
T Consensus       197 ~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          197 TYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             EEEETTEEEEEEEEEEEEEEC
T ss_pred             EEeeCCEEEEEEEEEEEEEEc
Confidence            99885542 234566777765

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.24  E-value=3.6e-11  Score=89.00  Aligned_cols=99  Identities=17%  Similarity=0.260  Sum_probs=68.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-ee-----------ccCCcEEEcc-----CCc
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-II-----------HSGGRYSITT-----AGA   68 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-~~-----------~~~~r~~v~~-----~G~   68 (114)
                      +....+|.+..+.+|.+|.|.|.+.++......+.|+|++  ..+... ..           ...+||.+..     ++.
T Consensus         7 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   86 (261)
T 2xqy_G            7 QVQLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVY   86 (261)
T ss_dssp             CCEEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred             ceeEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEE
Confidence            4445678889999999999999986543111279999874  221100 00           1257998864     358


Q ss_pred             EEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|++|+.+|+| .|.|.+.|........+..+.|.|..
T Consensus        87 L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           87 IQLSSLTSEDSA-VYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             EEECSCCGGGCE-EEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             EEEcCCCcccCe-EEEEEEecCCCcceEECCCEEEEEcc
Confidence            999999999995 99999998532222344567888875

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=99.24  E-value=3.5e-11  Score=80.07  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee-e--------eccCCcEEEc-cCCcEEEeecCCCCCCeeeE
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS-I--------IHSGGRYSIT-TAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~-~--------~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      ...+.+|.+|+|+|....  .... .+.|++....++.. .        ..-.+|+.+. .+|+|.|+|++.+|+| .|.
T Consensus        13 pv~~~~G~~VtL~c~~~~--~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG-~Y~   89 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESL--PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNS-TYI   89 (121)
T ss_dssp             CCEEETTSCEEECCSSCC--CSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCS-EEE
T ss_pred             EEEEEeCCCEEEeCCCCC--CCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCe-EEE
Confidence            357999999999998721  1223 89999976422210 0        1113577887 7899999999999996 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      |.+.+.-+  ...+...+|.|.++.
T Consensus        90 c~v~~~~~--~~~~~~~~L~V~~~~  112 (121)
T 2edo_A           90 MRVLKKTG--NEQEWKIKLQVLDPV  112 (121)
T ss_dssp             EEEEETTT--EEEECCEECEEECCS
T ss_pred             EEEEcCCC--cEEEEEEEEEEECCC
Confidence            99997632  234567788888653

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.24  E-value=6.7e-11  Score=85.53  Aligned_cols=99  Identities=15%  Similarity=0.302  Sum_probs=68.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeeee------c---cCCcEEEcc-----CCc
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSII------H---SGGRYSITT-----AGA   68 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~~------~---~~~r~~v~~-----~G~   68 (114)
                      +.+...|++..+.+|.+|.|.|.+.+...+...+.|+|++  ..   +++...      .   .++||.+..     ++.
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            3456678899999999999999985531111289999853  21   211100      0   468998863     347


Q ss_pred             EEEeecCCCCCCeeeEEEEeeccCC----cEEeCCCeEEEEec
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHKLTG----ERKISPPSQVMVSE  107 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~l~~----~~~~s~~a~L~V~~  107 (114)
                      |.|++++.+|+| .|.|.+.|.-.+    ....+..+.|.|..
T Consensus        82 L~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (242)
T 1hxm_B           82 LTIHNVEKQDIA-TYYCALWEAQQELGKKIKVFGPGTKLIITD  123 (242)
T ss_dssp             EEECSCCGGGCE-EEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred             EEECCCCcccCE-EEEEeeecCCccccccceeEcCcEEEEEcc
Confidence            999999999994 999999986311    22345578999986

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.24  E-value=3.7e-11  Score=85.92  Aligned_cols=96  Identities=21%  Similarity=0.317  Sum_probs=65.2

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEccC-----CcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITTA-----GALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~~-----G~L~I   71 (114)
                      ..+|.+..+.+|.+|.|.|.+.+.......+.|+|++  ..   ++...         ....+||.+..+     ..|.|
T Consensus         4 v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (223)
T 1dee_B            4 LVESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQM   83 (223)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEE
Confidence            3567788999999999999986542111279999854  21   11100         012579998642     37999


Q ss_pred             eecCCCCCCeeeEEEEeeccC---CcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLT---GERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~---~~~~~s~~a~L~V~~  107 (114)
                      ++|+.+|+| .|.|.+.|..+   .....+..+.|.|..
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  121 (223)
T 1dee_B           84 NSLRAEDTA-VYYCAKVKFYDPTAPNDYWGQGTLVTVSS  121 (223)
T ss_dssp             CSCCGGGCE-EEEEEEESSSSTTCCEEEECCCEEEEECS
T ss_pred             CCCCHHHCE-EEEEEEeccccCcccceeecCcEEEEEcc
Confidence            999999995 99999998642   111234567888874

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.24  E-value=2.9e-11  Score=87.66  Aligned_cols=96  Identities=21%  Similarity=0.303  Sum_probs=65.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee------------eeccCCcEEEccCCc-----EEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS------------IIHSGGRYSITTAGA-----LHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~------------~~~~~~r~~v~~~G~-----L~I   71 (114)
                      ..+|....+.+|++|.|.|.+.++..+...+.|+|..  ..+...            .....+||.+..++.     |.|
T Consensus         6 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (256)
T 3umt_A            6 LQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLEL   85 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEE
Confidence            3456677899999999999986543111289998742  211000            012357999875444     999


Q ss_pred             eecCCCCCCeeeEEEEeeccC-CcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLT-GERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~-~~~~~s~~a~L~V~~  107 (114)
                      ++++.+|+| .|.|.+.|... .....+..+.|.|.+
T Consensus        86 ~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           86 RSLTSEDSA-VYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             CSCCGGGCE-EEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             CCCCcccCE-EEEEEEccCCCccccEECCCEEEEEcC
Confidence            999999995 99999998622 122346678899986

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.23  E-value=5.9e-11  Score=82.27  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=66.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee----eccCCcEEEccC---CcEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI----IHSGGRYSITTA---GALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~----~~~~~r~~v~~~---G~L~I~~v~~~   77 (114)
                      ....|+...+.+|.+|.|.|.+.+...+  .+.|+|...     .|++..    ....+||.+..+   ..|.|++++.+
T Consensus        19 v~q~p~~v~v~~G~sVtL~C~~s~~~~~--~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~   96 (146)
T 2yc1_B           19 LTQSPATLSVSPGERATLSCRASQSVRS--YLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPE   96 (146)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEEeCCEEEEecCCCEEEEEEECCCCCC--EEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHH
Confidence            4455788899999999999998654322  789999641     222110    012579988542   36999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+| .|.|.+.|..  .......++|.|.++..-
T Consensus        97 DsG-~Y~C~~~~~~--~~~fg~GT~L~V~~~~~~  127 (146)
T 2yc1_B           97 DFA-IYYCQQYRYS--PRTFGQGTKVEIKRAAAE  127 (146)
T ss_dssp             GCS-EEEEEECSSS--SCEECCCEEEEEC-----
T ss_pred             HCE-EEEEEEecCC--CCeECCCEEEEEeCCccc
Confidence            995 9999999852  234566889999876643

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.23  E-value=4.6e-11  Score=85.24  Aligned_cols=96  Identities=19%  Similarity=0.316  Sum_probs=65.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEccC-----CcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITTA-----GALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~~-----G~L~I   71 (114)
                      ..+|+...+.+|.+|.|.|.+.++......+.|+|++  ..   ++...         ....+||.+..+     ..|.|
T Consensus         4 ~~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (220)
T 2fbj_H            4 LLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQM   83 (220)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEE
T ss_pred             EecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEE
Confidence            3567788999999999999986543111279999853  21   11100         012479998743     38999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ++++.+|+| .|.|.+.|..+.....+..++|.|.+
T Consensus        84 ~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           84 SKVRSEDTA-LYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             CSCCGGGCE-EEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             CCCChhhCE-EEEEEEeccccccceecCCEEEEecC
Confidence            999999995 99999998632111245567888875

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=99.23  E-value=6.9e-11  Score=77.23  Aligned_cols=94  Identities=26%  Similarity=0.281  Sum_probs=63.9

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee-------eccCCcEEEcc---C--CcEEEee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI-------IHSGGRYSITT---A--GALHIRD   73 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~-------~~~~~r~~v~~---~--G~L~I~~   73 (114)
                      ...|....+.+|.+|.|.|.+.+..... .+.|+|..  ..   ++...       ....+||.+..   +  ..|.|++
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   82 (116)
T 1tvd_A            4 TQSSPDQTVASGSEVVLLCTYDTVYSNP-DLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSC-CEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             ecCCCcEEEecCCeEEEEeEeEcCCCCc-EEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEcc
Confidence            4568888999999999999984321111 78999864  11   21100       11268998752   2  3799999


Q ss_pred             cCCCCCCeeeEEEEeecc-CCcEEeCCCeEEEEe
Q psy9140          74 TGMEDSYIRYYCQTTHKL-TGERKISPPSQVMVS  106 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l-~~~~~~s~~a~L~V~  106 (114)
                      ++.+|+| .|.|.+.+.. .....-...++|.|+
T Consensus        83 ~~~~DsG-~Y~C~~~~~~~~~~~~fg~GT~l~V~  115 (116)
T 1tvd_A           83 VRTEDSA-TYYCAFTLPPPTDKLIFGKGTRVTVE  115 (116)
T ss_dssp             CCGGGCE-EEEEEEECTTTTCCEEECCCEEEEEE
T ss_pred             CChHHCE-EEEEEEeCCCCccceEECCCeEEEEe
Confidence            9999995 9999999842 123344557788875

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.23  E-value=7.1e-12  Score=87.57  Aligned_cols=82  Identities=13%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc----CCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----AGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      +..+.+|.++.|.|.+.+.+ +  .+.|+||+..+...    ..+.....    .+.|.|.+|+.+|+| .|+|.|.|..
T Consensus       108 ~~~v~~G~~v~L~C~~~~~p-~--~~~W~k~g~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~  179 (196)
T 2d3v_A          108 SPVVTSGENVTLQCGSRLRF-D--RFILTEEGDHKLSW----TLDSQLTPSGQFQALFPVGPVTPSHRW-MLRCYGSRRH  179 (196)
T ss_dssp             ---------CEEEEEESSCC-S--EEEEEEC---CCEE----EEECEECTTSCEEEEEECCCCBTTBCE-EEEEEEEETT
T ss_pred             CccccCCCcEEEEEEcCCCC-C--EEEEEccCCccccc----ccccccccCCCceeEEEeeecCcccCe-eEEEEEEccC
Confidence            45799999999999997754 3  79999999864211    11111222    378999999999995 9999999974


Q ss_pred             CCc--EEeCCCeEEEE
Q psy9140          92 TGE--RKISPPSQVMV  105 (114)
Q Consensus        92 ~~~--~~~s~~a~L~V  105 (114)
                      ...  ...|.+..|.|
T Consensus       180 ~~~~~s~~S~~~~l~V  195 (196)
T 2d3v_A          180 ILQVWSEPSDLLEIPV  195 (196)
T ss_dssp             EEEEECCCCCCEEECC
T ss_pred             CCCccCCCCccEEEEe
Confidence            321  12344555554

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.23  E-value=1.1e-10  Score=85.97  Aligned_cols=97  Identities=19%  Similarity=0.263  Sum_probs=67.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee---------eccCCcEEEcc----CCcE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI---------IHSGGRYSITT----AGAL   69 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~---------~~~~~r~~v~~----~G~L   69 (114)
                      ..+...|++..+.+|.+|.|.|.+.+.  +...+.|+|++.  .   +++..         ....+||.+..    ++.|
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~--~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL  102 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDF--QATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL  102 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSS--CEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCC--CCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEE
Confidence            456777889999999999999998653  222899999741  1   11100         01257998864    2379


Q ss_pred             EEeecCCCCCCeeeEEEEeeccC---CcEEeCCCeEEEEec
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLT---GERKISPPSQVMVSE  107 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~---~~~~~s~~a~L~V~~  107 (114)
                      .|.+|+.+|+| .|+|.+.|..+   .....+..++|.|..
T Consensus       103 ~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  142 (279)
T 2wbj_D          103 TVTSAHPEDSS-FYICSARDLTSGANNEQFFGPGTRLTVTE  142 (279)
T ss_dssp             EESSCCGGGCE-EEEEEEEETTCBTSCCEEECCCEEEEEES
T ss_pred             EEccCCccCCE-EEEEEEcccccCCccceeeCCCEEEEEec
Confidence            99999999995 99999999431   112335567888875

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.23  E-value=2.3e-12  Score=91.64  Aligned_cols=93  Identities=14%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--ee---eee----eeccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SE---ARS----IIHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      +...|++..+.+|++|.|.|.+.+.+.+  .+.|+|++.  .+   ++.    .....+||.+..++   .|.|.+++.+
T Consensus        26 v~~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           26 VTQSPASLSMSIGEKVTIRCITSTDIDD--DMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             EEEECSBC-------CCEEEEEEEEESS--CEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             EEEcCCeEEEecCCCEEEEEecCCcCCC--eEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            3445888899999999999998664333  799998642  11   000    01124688776444   7999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+| .|+|.|.|..+.  ..+..+.|.|..
T Consensus       104 D~G-~Y~C~~~~~~~~--~~~~~~~l~V~~  130 (233)
T 3bqu_C          104 DVA-DYYCLQSDNLPY--TFGGGTNLEIKR  130 (233)
T ss_dssp             CCS-EEEEEECSSSSC--CBCCCCBC---C
T ss_pred             HCE-EEEEEEecCCce--eecCCEEEEEeC
Confidence            995 999999986532  133345666664

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.23  E-value=2.1e-11  Score=100.96  Aligned_cols=97  Identities=15%  Similarity=0.255  Sum_probs=75.4

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeee
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRY   83 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y   83 (114)
                      |...++...+.+..+.+|.++.|.|.+.+++.+  .+.|+||+..+     ..+.++.+.++|.|.|.+++ .+|+ |.|
T Consensus       524 V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~--~i~W~k~~~~l-----~~~~~~~~~~~~~l~i~~v~~~~d~-G~Y  595 (816)
T 3dmk_A          524 VYGLPYIRQMEKKAIVAGETLIVTCPVAGYPID--SIVWERDNRAL-----PINRKQKVFPNGTLIIENVERNSDQ-ATY  595 (816)
T ss_dssp             ECSSCEECCCCCEEEETTCCEEEECCEECSSEE--EEEEEETTEES-----CCSTTEEECTTSEEEESSCCHHHHC-EEE
T ss_pred             EecCCeeEccCCeEEecCCeEEEEEEecCCCCC--EEEEEECCeEc-----ccCCceEEecCCeEEEEecCccccC-EEE
Confidence            445566667778899999999999999775333  89999999854     45778889999999999998 6898 599


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|.|.|..+..  .+....|.|..++.+
T Consensus       596 ~C~a~n~~g~~--~~~~~~v~v~~~p~~  621 (816)
T 3dmk_A          596 TCVAKNQEGYS--ARGSLEVQVMVLPRI  621 (816)
T ss_dssp             EEEEEESSSCE--EEEEEEEEEECCCCC
T ss_pred             EEEEEECCCce--eeeeEEEEEecCCcc
Confidence            99999986542  333556666665544

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.23  E-value=5e-11  Score=87.74  Aligned_cols=98  Identities=21%  Similarity=0.320  Sum_probs=66.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee---------eccCCcEEEccCC-----cEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI---------IHSGGRYSITTAG-----ALH   70 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~---------~~~~~r~~v~~~G-----~L~   70 (114)
                      +...|++..+.+|.++.|.|.+.+.+.+...+.|+|++  ..+   +...         ...++||.+..++     .|.
T Consensus       137 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  216 (276)
T 3auv_A          137 QLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQ  216 (276)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             EEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEE
Confidence            34567788999999999999996543211289999963  211   1000         1235799887543     899


Q ss_pred             EeecCCCCCCeeeEEEEeeccC--CcEEeCCCeEEEEecc
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLT--GERKISPPSQVMVSEI  108 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~--~~~~~s~~a~L~V~~~  108 (114)
                      |.+++.+|+| .|+|.|.|..+  +.......++|.|+..
T Consensus       217 I~~v~~~DsG-~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~  255 (276)
T 3auv_A          217 MNSLRAEDTA-VYYCARFVFFLPYAMDYWGQGTLVTVSSA  255 (276)
T ss_dssp             ECSCCGGGCE-EEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred             ECCCChhHCE-EEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence            9999999995 99999999731  2223455789998743

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.22  E-value=8.2e-11  Score=83.94  Aligned_cols=95  Identities=24%  Similarity=0.376  Sum_probs=67.4

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeeee-----eccCCcEEEccC------CcEEEeecC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARSI-----IHSGGRYSITTA------GALHIRDTG   75 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~~-----~~~~~r~~v~~~------G~L~I~~v~   75 (114)
                      .....|++..+.+|.+|.|.|.+.+.. +  .+.|+|.+  .......     ...++||.+..+      +.|.|++++
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~-~--~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~   79 (207)
T 1ypz_E            3 QVEQSPSALSLHEGTDSALRCNFTTTM-R--SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQ   79 (207)
T ss_dssp             SEEESCSEEEEETTCCEEEEEEESSCC-S--EEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCC
T ss_pred             ccEECCCeEEEccCCcEEEEEEEeCCC-e--EEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCC
Confidence            455678889999999999999986432 2  79999853  2111100     124689998754      479999999


Q ss_pred             CCCCCeeeEEEEeeccC--------CcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLT--------GERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~--------~~~~~s~~a~L~V~~  107 (114)
                      .+|+| .|.|.+.+..+        .+......++|.|..
T Consensus        80 ~~D~G-~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~  118 (207)
T 1ypz_E           80 LEDSG-TYFCAADTWHISEGYELGTDKLVFGQGTQVTVEP  118 (207)
T ss_dssp             GGGCE-EEEEEEECBCCCTTCCCCCCCCEECCCEEEEEEC
T ss_pred             HHHCE-EEEEEEecCCcccccccccceeeecCccEEEEcc
Confidence            99995 99999998632        122334578999985

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.22  E-value=3.6e-11  Score=85.70  Aligned_cols=96  Identities=20%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-e-----------eccCCcEEEccC-----CcEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-I-----------IHSGGRYSITTA-----GALH   70 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-~-----------~~~~~r~~v~~~-----G~L~   70 (114)
                      +...|.+..+.+|.++.|.|.+.+++.+...+.|+|++  ..+... .           ....+||.+..+     +.|.
T Consensus       122 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  201 (240)
T 1moe_A          122 QLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQ  201 (240)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             EEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEE
Confidence            55667888999999999999997654322279999962  221000 0           013568988643     4799


Q ss_pred             EeecCCCCCCeeeEEEEeecc--CC-cEEeCCCeEEEEe
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKL--TG-ERKISPPSQVMVS  106 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l--~~-~~~~s~~a~L~V~  106 (114)
                      |.+++.+|+| .|+|.|.+..  +. .......++|.|.
T Consensus       202 I~~v~~~D~G-~Y~C~a~~~~~~~~~~~~fg~gt~l~V~  239 (240)
T 1moe_A          202 LTSLTSEDTA-VYYCAPFGYYVSDYAMAYWGQGTSVTVS  239 (240)
T ss_dssp             ECSCCGGGCE-EEEEEECSTTSCTTSCCCCCCCEEEEEC
T ss_pred             ECcCCHHHCE-EEEEEEEecCCCCcCeEEECCCeEEEeC
Confidence            9999999995 9999999532  11 1223457788875

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.22  E-value=2.4e-11  Score=89.90  Aligned_cols=100  Identities=15%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCC-cc-eEEEeeCCee--eee----------eeeccCCcEEEc----cCCcEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHN-LL-LIAWLREGVS--EAR----------SIIHSGGRYSIT----TAGALH   70 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd~~~--~~~----------~~~~~~~r~~v~----~~G~L~   70 (114)
                      .|...|++..+.+|+++.|.|.+.+...+ +. .+.|+|++..  ...          ......+|+.+.    .++.|.
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   95 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR   95 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence            35566777899999999999998653222 23 8999996421  000          011345788875    468899


Q ss_pred             EeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |.+++.+|+| .|+|.+.+...+  ..+..+.|.|..++.+
T Consensus        96 I~~v~~~D~G-~Y~C~~~~~~~~--~~~~~~~l~V~~~p~~  133 (331)
T 3u83_A           96 LSRLELEDEG-VYICEFATFPTG--NRESQLNLTVMAKPTN  133 (331)
T ss_dssp             ECSCCGGGCE-EEEEEEEEETTE--EEEEEEEEEEEBCCEE
T ss_pred             EcccCcccCc-EEEEEEEecCCC--ccEEEEEEEEecCCcc
Confidence            9999999995 999985543333  2555788888876544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.22  E-value=2.1e-11  Score=89.21  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCC---CcceEEEeeCC--ee---eeeee----eccCCcEEEccC---CcEEEee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNH---NLLLIAWLREG--VS---EARSI----IHSGGRYSITTA---GALHIRD   73 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~---~~~~vsW~kd~--~~---~~~~~----~~~~~r~~v~~~---G~L~I~~   73 (114)
                      .+...|.+..|.+|.+|.|.|.+.+...   ....+.|+|++  ..   +++..    ...++||.+..+   +.|.|.+
T Consensus        17 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   96 (268)
T 1x9q_A           17 VMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINR   96 (268)
T ss_dssp             CEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             eEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECC
Confidence            3666788999999999999999866431   01279999863  21   11100    012579988643   3799999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      ++.+|+| .|.|.+.|...  ...+..++|.|..+
T Consensus        97 v~~~DsG-~Y~C~~~~~~~--~~~~~~~~L~V~~~  128 (268)
T 1x9q_A           97 VEAEDLG-VYFCSQSTHVP--WTFGGGTKLEIKSS  128 (268)
T ss_dssp             CCGGGCE-EEEEEECSSSS--CEECCCEEEC----
T ss_pred             CChhHCE-EEEEEEecCCC--ceEcCCEEEEEccC
Confidence            9999995 99999998742  12455677887754

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.22  E-value=2.3e-11  Score=89.38  Aligned_cols=91  Identities=13%  Similarity=-0.034  Sum_probs=64.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+.+.|.. .|.+|++++|.|.+++.   ...+.|+|++..+.   .....+.....++.|.|.+|+.+|+| .|+|.+
T Consensus         8 P~i~~~P~~-~v~~G~~VtL~C~~~~~---~~~~~w~k~g~~~~---~~~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~~   79 (242)
T 1p6f_A            8 PFIWAEPHF-MVPKEKQVTICCQGNYG---AVEYQLHFEGSLFA---VDRPKPPERINKVKFYIPDMNSRMAG-QYSCIY   79 (242)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT---CCEEEEEETTEEEE---EECCSSCTTCCEEEEEECSCCGGGCE-EEEEEE
T ss_pred             CEEEeeCCC-ccCCCCcEEEEEeeCCC---CcEEEEEECCCccc---cccccccCCcceeEEEecCCCcccCe-EEEEEE
Confidence            447788877 89999999999998642   12789999998642   11111111234678999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|... ....|....|.|.+
T Consensus        80 ~~~~~-~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           80 RVGEL-WSEPSNLLDLVVTE   98 (242)
T ss_dssp             EETTE-ECCCCCCEEEEEEC
T ss_pred             ecCCc-cccCCcceEEEeec
Confidence            87532 11246688898874

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.22  E-value=4.2e-11  Score=86.67  Aligned_cols=97  Identities=16%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee-------eccCCcEEEccCC---cEEEeecCC
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI-------IHSGGRYSITTAG---ALHIRDTGM   76 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~~   76 (114)
                      .+...|.+..+.+|++|.|.|.+.+.+.++ .+.|+|.  +..+....       ....+||.+..++   .|.|.+++.
T Consensus       143 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  221 (257)
T 3gkz_A          143 VLTQSPAIMSASPGEKVTLTCSASSSVSSS-HLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA  221 (257)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCCGG-GEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEEcCCceEEEeCCCcEEEEEEEccCccce-EEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh
Confidence            456667888999999999999997643322 7899984  33211000       0114788876433   599999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|+| .|+|.|.|.  +....+..++|.|+...
T Consensus       222 ~D~G-~Y~C~~~~~--~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          222 EDAA-SYFCHQWSS--FPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             GGCE-EEEEEECSS--SSCEECCCEEEEECCC-
T ss_pred             HHCE-EEEEEEccC--CceEEcCCEEEEEEeCC
Confidence            9995 999999985  34456779999998543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.22  E-value=3.1e-11  Score=91.10  Aligned_cols=92  Identities=17%  Similarity=0.327  Sum_probs=65.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeee---eee---------eccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEA---RSI---------IHSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~---~~~---------~~~~~r~~v~~~-----G~L~I~   72 (114)
                      .+|.+..+.+|++|.|.|.+.+...+...+.|+|++  ..+.   +..         ...++||.+..+     +.|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            456778999999999999996542111289999973  3221   000         012579998643     489999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|+|.|.|...   ..+..++|.|.+
T Consensus        85 ~v~~~D~G-~Y~C~~~n~~~---~~~~~~~l~V~~  115 (344)
T 1za6_B           85 SLRSEDTA-VYFCTRSLNMA---YWGQGTLVTVSS  115 (344)
T ss_dssp             SCCGGGCE-EEEEEETTTTC---EECCCEEEEECS
T ss_pred             CCCcccCE-EEEEEEecCcc---eecCcEEEEEec
Confidence            99999995 99999999432   345677888873

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.22  E-value=4.5e-11  Score=77.55  Aligned_cols=92  Identities=14%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee-----eeeee----eccCCcEEEcc---C--CcEEEeecCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-----EARSI----IHSGGRYSITT---A--GALHIRDTGMED   78 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-----~~~~~----~~~~~r~~v~~---~--G~L~I~~v~~~D   78 (114)
                      .|....+.+|++|.|.|...+....+ .+.|+|.+..     ++...    ...++||.+..   +  ..|.|++++.+|
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   85 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWKDY-KKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSD   85 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGTTS-CEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcccc-eEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHH
Confidence            46778999999999999985432222 6999997531     21110    12357998852   2  379999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +| .|.|.+.+...   ..+...+|.|..++
T Consensus        86 sG-~Y~C~v~~~~~---~~~~~v~L~V~~~p  112 (113)
T 1zox_A           86 AG-IYWCGITKGGL---DPMFKVTVNIGPVP  112 (113)
T ss_dssp             CE-EEEEEECCSSS---CCEEEEEEEEECC-
T ss_pred             CE-EEEEeeEcCCC---CccEEEEEEEEcCC
Confidence            95 99999998631   13446678877543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.22  E-value=6.6e-11  Score=88.12  Aligned_cols=98  Identities=16%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCc----ceEEEeeCC--eeeeeeee-------ccCCcEEEccC---CcEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNL----LLIAWLREG--VSEARSII-------HSGGRYSITTA---GALHIRD   73 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~----~~vsW~kd~--~~~~~~~~-------~~~~r~~v~~~---G~L~I~~   73 (114)
                      +...|.+..+.+|+++.|.|.+.+.+.+.    ..+.|+|++  ..+.....       ..++||.+..+   +.|.|.+
T Consensus       162 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~  241 (291)
T 2gki_A          162 MSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISS  241 (291)
T ss_dssp             EECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             EEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECC
Confidence            34456778899999999999996654320    168999963  21100000       11579987543   3799999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      ++.+|+| .|+|.|.|.  +.......++|.|+....
T Consensus       242 v~~~DsG-~Y~C~a~~~--~~~~fg~gt~l~v~~~~~  275 (291)
T 2gki_A          242 VQAEDLA-VYYCKQSYY--HMYTFGSGTKLEIKHHHH  275 (291)
T ss_dssp             CCGGGCE-EEEEEEEET--TEEEECCCEEEEEECC--
T ss_pred             CCHHHCE-EEEEEEccC--CceEEcCCEEEEEEeeEc
Confidence            9999995 999999995  444567788999987653

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.22  E-value=1.4e-11  Score=98.50  Aligned_cols=91  Identities=19%  Similarity=0.223  Sum_probs=68.3

Q ss_pred             ccceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeee-------eccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140          13 NTGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSI-------IHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~-------~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      ..++..+.+|++++|.|.+ .+.+.+  .++|+|++..+....       ..-.+|+.+.++|+|.|.+|+.+|+| .|+
T Consensus       372 l~~~~~~~~G~~v~L~C~~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G-~Y~  448 (581)
T 3o3u_N          372 SAQNITARIGEPLVLKCKGAPKKPPQ--RLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEG-IFR  448 (581)
T ss_dssp             CCEEEEEETTSCEEECCTTCCSSSSC--EEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCE-EEE
T ss_pred             HhcccceecCCcEEEeeeecCCCCCc--eEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCe-EEE
Confidence            4556789999999999998 554333  899999876321100       01256899999999999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.+.|..+..  .+..++|.|..+
T Consensus       449 C~~~n~~~~~--~~~~~~l~V~~~  470 (581)
T 3o3u_N          449 CQAMNRNGKE--TKSNYRVRVYQI  470 (581)
T ss_dssp             EEEECTTSCE--EEEEEEEEEEBC
T ss_pred             EEEEcCCCce--eEEEEEEEEEcC
Confidence            9999986542  244778888763

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.22  E-value=2.5e-11  Score=89.30  Aligned_cols=87  Identities=18%  Similarity=0.324  Sum_probs=59.3

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeee------------eeccCCcEEEc----cCCcEEEeecCCCC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARS------------IIHSGGRYSIT----TAGALHIRDTGMED   78 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~------------~~~~~~r~~v~----~~G~L~I~~v~~~D   78 (114)
                      +..|.+|++|.|.|.+.+.  ++. .++|+|++......            .....+|+.+.    .++.|.|.+|+.+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~--~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVN--ETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             SCEEETTSCEEECCBCCCS--SCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             EeEEEcCCcEEEEEEecCC--CCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            6789999999999998543  233 79999976432100            01124566653    35689999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +| .|+|.|.|...+.  .+..+.+.+..
T Consensus        86 ~G-~Y~C~a~n~~~~~--~~~~~~~~v~~  111 (308)
T 4fom_A           86 SG-KYICKAVTFPLGN--AQSSTTVTVLV  111 (308)
T ss_dssp             CE-EEEEEEEETTTEE--EEEEEEEEEEB
T ss_pred             CE-EEEEEEeeCCCcc--eeeeeEEEeee
Confidence            95 9999999864443  34445555553

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.22  E-value=1.9e-11  Score=90.79  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             eccc-cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140           4 GDMS-SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus         4 avv~-~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      .++. +.|...|. ..|.+|+++.|.|.+.+. .+  .+.|+||+..+..      .+.....++.|.|.+|+.+|+| .
T Consensus        20 ~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~--~~~W~k~g~~~~~------~~~~~~~~~~L~I~~v~~~D~G-~   88 (316)
T 3vh8_G           20 GGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FN--NFMLYKEDRIHIP------IFHGRIFQESFNMSPVTTAHAG-N   88 (316)
T ss_dssp             ----CCEEEEESC-SEEETTSCEEEEEEBTTB-CC--SEEEEESSCSSSC------HHHHCCBSSCEEECSCCGGGCE-E
T ss_pred             CCCCCCEeeccCC-CccCCCCCEEEEEEccCC-Cc--eEEEEeCCCccce------eecCCcceEEEEECCCCcccCe-E
Confidence            3444 44778887 789999999999999775 22  7899999985311      1111234789999999999995 9


Q ss_pred             eEEEEeeccCC--cEEeCCCeEEEEec
Q psy9140          83 YYCQTTHKLTG--ERKISPPSQVMVSE  107 (114)
Q Consensus        83 Y~C~a~n~l~~--~~~~s~~a~L~V~~  107 (114)
                      |+|.|.|..+.  ....|....|.|..
T Consensus        89 Y~C~a~~~~~~~~~~~~s~~~~l~V~~  115 (316)
T 3vh8_G           89 YTCRGSHPHSPTGWSAPSNPVVIMVTG  115 (316)
T ss_dssp             EEEEEBCSSSSSSBCCCCCCEEEEEEC
T ss_pred             EEEEEEcCCCCcceecCCCcEEEEEec
Confidence            99999875332  12345678888865

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.22  E-value=2.5e-11  Score=87.47  Aligned_cols=88  Identities=16%  Similarity=0.242  Sum_probs=61.1

Q ss_pred             ccceeEEEeCCeEEEEeec---CCCCCCcceEEEeeCCeeeeeee-------------eccCC----cEEE-----ccCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNI---PAYNHNLLLIAWLREGVSEARSI-------------IHSGG----RYSI-----TTAG   67 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~---~~~~~~~~~vsW~kd~~~~~~~~-------------~~~~~----r~~v-----~~~G   67 (114)
                      .|.+..+.+|.++.|.|.+   .+.+.+  .+.|+|++.......             ...++    |+.+     ..++
T Consensus       124 ~p~~~~v~~G~~v~L~C~~~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  201 (268)
T 3mj6_A          124 EPRDLRVRVGDTTQMRCSIQSTEEKRVT--KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDG  201 (268)
T ss_dssp             CCSEEEEETTCCEEECCBCEESSSSCCC--EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBC
T ss_pred             CCCccccccCCcEEEEEEecCCCCCCcc--ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeE
Confidence            5667889999999999999   443333  899999533110000             11222    4444     3478


Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.|.+++.+|+| .|+|.|.|..+.   .+..+.|.|.
T Consensus       202 ~L~i~~v~~~D~G-~Y~C~a~n~~g~---~~~~~~l~V~  236 (268)
T 3mj6_A          202 SIKLQTVKESDQG-IYTCSIYVGKLE---SRKTIVLHVV  236 (268)
T ss_dssp             CEEECSCCGGGCE-EEEEEEEETTEE---EEEEEEEEEE
T ss_pred             EEEECcCChhhCe-EEEEEEEcCCce---EEEEEEEEEE
Confidence            9999999999995 999999996542   4557788883

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.22  E-value=5.4e-12  Score=93.38  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             ceeecc-ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEe-ecCCCCCCeeeEEE
Q psy9140           9 DYEINT-GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIR-DTGMEDSYIRYYCQ   86 (114)
Q Consensus         9 ~~~v~~-~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~-~v~~~D~gg~Y~C~   86 (114)
                      .+.+.+ ....+.+|.++.|.|.+.+++.+. .++|+|++..+     ..+  .. ..++.|.|. +++.+|+| .|+|.
T Consensus       233 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~i~W~~~~~~~-----~~~--~~-~~~~~L~i~~~v~~~d~G-~Y~C~  302 (331)
T 3u83_A          233 EVTIEGFDGNWYLQRMDVKLTCKADANPPAT-EYHWTTLNGSL-----PKG--VE-AQNRTLFFKGPINYSLAG-TYICE  302 (331)
T ss_dssp             EEEEECCCSCCBTTCCCEEEEEEEEEESCCC-EEEEEETTBSC-----CTT--EE-EETTEEEECSCCCGGGCE-EEEEE
T ss_pred             eEEEecCCCceEeCCCeEEEEEeCcCCCCCC-EEEEEECCCcc-----ccc--ce-ecCcEEEEeCCCccccCe-EEEEE
Confidence            344344 344588999999999997764441 39999999853     222  22 257899999 99999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.++.   .+..+.|.|++...
T Consensus       303 a~N~~G~---~~~~~~l~V~~~~~  323 (331)
T 3u83_A          303 ATNPIGT---RSGQVEVNITEAAA  323 (331)
T ss_dssp             EEETTEE---EEEEEEECCBC---
T ss_pred             EEecccc---ceEEEEEEEeccch
Confidence            9999864   46678888886543

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.21  E-value=1.7e-10  Score=83.80  Aligned_cols=96  Identities=19%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeeee-------eccCCcEEEcc----CCcEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARSI-------IHSGGRYSITT----AGALHI   71 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~~-------~~~~~r~~v~~----~G~L~I   71 (114)
                      ..+...|++..+.+|.+|.|.|.+.. ..  ..+.|+|++.  .   +++..       ....+||.+..    ++.|.|
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~~-~~--~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I   80 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQNL-NH--DAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTV   80 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEECS-CC--SEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEE
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeCC-CC--CEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEE
Confidence            34566788999999999999999842 12  2899998631  1   11110       01247999863    468999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ++++.+|+| .|.|.+.|........+..+.|.|..
T Consensus        81 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~l~V~~  115 (252)
T 1oga_E           81 TSAQKNPTA-FYLCASSSRSSYEQYFGPGTRLTVTE  115 (252)
T ss_dssp             CSCCSCCCE-EEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             CcCChhhCE-EEEEEEecCCccceeECCCEEEEEec
Confidence            999999995 99999998521112234566788764

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.21  E-value=3.3e-11  Score=78.73  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ...+.|. ..|.+|+.++|.|.+...+..  .. .+.|.||+..+.     .     ...++.|.|.+|+.+|+| .|+|
T Consensus        10 ~l~~~p~-~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~-----~-----~~~~~~l~i~~v~~~dsG-~Y~C   77 (108)
T 4hwn_A           10 ILRAVPS-AEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQ-----S-----RGLSSEFQIPTASEDHSG-SYWC   77 (108)
T ss_dssp             EEEEESC-SSCBTTCCEEEEEEC---------CCEEEEEETTEEEE-----E-----EESCCEEEESSCCGGGCE-EEEE
T ss_pred             EEEecCC-CcCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCcc-----C-----CCcccEEEeCccCcccCe-EEEE
Confidence            3556664 458899999999998643221  01 389999998541     0     124688999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEecccc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .+.|..+.....|.+..|.|+.+..
T Consensus        78 ~~~~~~~~~~~~S~~l~L~V~g~~~  102 (108)
T 4hwn_A           78 EAATEDNQVWKQSPQLEIRVQGASA  102 (108)
T ss_dssp             EEECTTSSSEEECCCEEECCBC---
T ss_pred             EEEeCCCceeccCCCEEEEEEecch
Confidence            9998754445678899999987643

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.21  E-value=8.1e-12  Score=90.68  Aligned_cols=74  Identities=14%  Similarity=0.087  Sum_probs=59.2

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      |.+..+.+|.++.|.|.+.+++.+  .+.|+|++.             .+.++|.|.+  ++.+|+| .|+|.|.|.++.
T Consensus       192 p~~~~v~~g~~~~l~C~~~g~P~p--~i~W~~~~~-------------~~~~~g~~~~--v~~~d~G-~Y~C~a~N~~G~  253 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWGNPLP--ELKCLKDGT-------------FPLPIGESVT--VTRDLEG-TYLCRARSTQGE  253 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCC--EEEEEETTT-------------EECCTTSCEE--CCGGGCE-EEEEEEEETTEE
T ss_pred             CCccEEcCCCeEEEEeECccCCCC--eEEEEECCc-------------ccCCCCcEEE--eehhhCe-EEEEEEECCCCc
Confidence            567889999999999999776554  899999986             2345677754  8999995 999999998753


Q ss_pred             cEEeCCCeEEEEecc
Q psy9140          94 ERKISPPSQVMVSEI  108 (114)
Q Consensus        94 ~~~~s~~a~L~V~~~  108 (114)
                         .+..+.|.|..|
T Consensus       254 ---~~~~~~l~V~~p  265 (265)
T 2oz4_A          254 ---VTREVTVNVLSP  265 (265)
T ss_dssp             ---EEEEEEEEEECC
T ss_pred             ---EEEEEEEEEecC
Confidence               566788988764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.21  E-value=3.8e-11  Score=84.33  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc----CCcEEEeecCCCCCCeeeE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----AGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~   84 (114)
                      .+.+.|. ..|.+|.++.|+|.+.+.  + ..+.|+||+..+..     +.++....    ++.|.|.+|+  |+ |.|+
T Consensus       110 ~i~~~p~-~~v~~G~~v~L~C~~~~~--~-~~~~w~k~g~~~~~-----~~~~~~~~~~~~~~~L~i~~v~--d~-G~Y~  177 (201)
T 1nkr_A          110 SLSAQPG-PTVLAGENVTLSCSSRSS--Y-DMYHLSREGEAHER-----RLPAGPKVNGTFQADFPLGPAT--HG-GTYR  177 (201)
T ss_dssp             EEEEESC-SEECTTCEEEEEEEESSC--C-SEEEEEETTCSSCE-----EEECEEEETTEEEEEEEEEECC--SC-EEEE
T ss_pred             ceecCCC-CccCCCCeEEEEEeCCCC--C-ceEEEEECCcccCc-----ccccccccCCceEEEEEeCCcC--CC-eeEE
Confidence            3555564 578999999999998642  1 27899999985421     11122221    5789999999  98 5999


Q ss_pred             EEEeeccCC--cEEeCCCeEEEEe
Q psy9140          85 CQTTHKLTG--ERKISPPSQVMVS  106 (114)
Q Consensus        85 C~a~n~l~~--~~~~s~~a~L~V~  106 (114)
                      |.|.+....  ....|.+..|.|+
T Consensus       178 C~a~~~~~~~~~s~~S~~~~l~V~  201 (201)
T 1nkr_A          178 CFGSFHDSPYEWSKSSDPLLVSVT  201 (201)
T ss_dssp             EEEEETTEEEEECCCCCCEEEEEC
T ss_pred             EEEEcCCCCCcCCCCCCCEEEEeC
Confidence            999975211  1123567777764

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=99.21  E-value=1.7e-10  Score=75.26  Aligned_cols=90  Identities=22%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--------eeeeee---------eccCCcEEEcc--C---CcE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--------SEARSI---------IHSGGRYSITT--A---GAL   69 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--------~~~~~~---------~~~~~r~~v~~--~---G~L   69 (114)
                      ..|....+.+|.+|.|.|...+..... .+.|+|...        .++...         ....+||.+..  +   ..|
T Consensus         3 Q~p~~~~~~~G~~vtL~C~~~~~~~~~-~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (115)
T 2atp_B            3 QTPSSLLVQTNHTAKMSCEVKSISKLT-SIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSS-EEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             cCCCCEEEcCCCcEEEEEEecCCCCcc-cEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEE
Confidence            457888999999999999985432122 799998642        121110         01257998864  2   379


Q ss_pred             EEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|++++.+|+| .|.|.+.+.  +...-...++|.|
T Consensus        82 ~I~~~~~~DsG-~Y~C~~~~~--~~~~fg~GT~l~V  114 (115)
T 2atp_B           82 SIMNVKPEDSD-FYFCATVGS--PKMVFGTGTKLTV  114 (115)
T ss_dssp             EECSCCGGGCE-EEEEEEECS--SCEEECCCEEEEE
T ss_pred             EECCCCHHHCE-EEEEeEccC--CcccCCCCEEEEE
Confidence            99999999995 999999863  3444566778876

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.21  E-value=2.7e-11  Score=91.51  Aligned_cols=89  Identities=9%  Similarity=0.007  Sum_probs=64.3

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeeee---eeccCCcEEEc-----------cC--CcEEEeec
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEARS---IIHSGGRYSIT-----------TA--GALHIRDT   74 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~~---~~~~~~r~~v~-----------~~--G~L~I~~v   74 (114)
                      +....+.+|..+.|.|.+.+....  +. .++|.|++..+...   ....+++|.+.           .+  +.|.|.++
T Consensus       183 ~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  262 (363)
T 1wio_A          183 SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA  262 (363)
T ss_dssp             EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSB
T ss_pred             CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccC
Confidence            366778999999999988653211  12 89999999864210   00126777773           33  49999999


Q ss_pred             CCCCCCeeeEEEEeec--cCCcEEeCCCeEEEEe
Q psy9140          75 GMEDSYIRYYCQTTHK--LTGERKISPPSQVMVS  106 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~--l~~~~~~s~~a~L~V~  106 (114)
                      +.+|+| .|+|.|.|.  .+.   .+..++|.|.
T Consensus       263 ~~~d~G-~Y~C~a~n~~~~g~---~~~~~~l~V~  292 (363)
T 1wio_A          263 LPQYAG-SGNLTLALEAKTGK---LHQEVNLVVM  292 (363)
T ss_dssp             CGGGCE-EEEEEECBTTTTCC---EEEEEEEEEE
T ss_pred             CcCcCc-EEEEEEEEhhhcCe---EEEEEeEEEE
Confidence            999995 999999998  653   4557777776

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.20  E-value=3.6e-11  Score=82.70  Aligned_cols=79  Identities=10%  Similarity=0.047  Sum_probs=56.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee-eccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI-IHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~-~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +...+....+.+|..+.|.|.+.+.+.+  .++|+|++..+.... ...++.+..  .+.|.|.+++.+|+| .|+|.|.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~c~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g-~YtC~a~  195 (218)
T 4frw_A          121 SLNPGPALEEGQGLTLAASCTAEGSPAP--SVTWDTEVKGTTSSRSFKHSRSAAV--TSEFHLVPSRSMNGQ-PLTCVVS  195 (218)
T ss_dssp             EEEECSCEETTCCSEEEEEEEEEEBSCC--EEEEEESSCCEEEEEEEECSSSEEE--EEEEEECCCGGGTTC-EEEEEEE
T ss_pred             eeeeeeeeeeeeccccceeeeccCCcCc--eEEEEECCcccccCceEecCCcEEE--EEEEEEeeCCHHhCe-EEEEEEE
Confidence            3445556677889999999999776544  899999988653211 111222322  357999999999995 9999999


Q ss_pred             eccCC
Q psy9140          89 HKLTG   93 (114)
Q Consensus        89 n~l~~   93 (114)
                      |..+.
T Consensus       196 N~~g~  200 (218)
T 4frw_A          196 HPGLL  200 (218)
T ss_dssp             CTTCS
T ss_pred             eCCCC
Confidence            98654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.20  E-value=5e-12  Score=88.52  Aligned_cols=81  Identities=19%  Similarity=0.315  Sum_probs=59.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      +.+.+.+.+..+.+|..+.|.|.+.++.++++.++|+||+..+...     ....+++|.+.  +.|.|.+++.+|+| .
T Consensus       115 P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~G-~  191 (213)
T 3mj8_L          115 PSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMAT--SYLTMTADAWKSRN-T  191 (213)
T ss_dssp             CEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEE--EEEEEESHHHHSCS-C
T ss_pred             CeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEE--EEEEEeHHHcCCCC-E
Confidence            4456666666666899999999997643332389999999875210     01145667663  67999999999995 9


Q ss_pred             eEEEEeecc
Q psy9140          83 YYCQTTHKL   91 (114)
Q Consensus        83 Y~C~a~n~l   91 (114)
                      |+|.|.|..
T Consensus       192 Y~C~a~n~~  200 (213)
T 3mj8_L          192 FICKVTHGG  200 (213)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999999974

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.20  E-value=4.2e-11  Score=84.10  Aligned_cols=85  Identities=13%  Similarity=0.193  Sum_probs=55.9

Q ss_pred             eeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCc--EEEccCCc---EEEeecCCCCCCeeeEEEEee
Q psy9140          16 NTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGR--YSITTAGA---LHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r--~~v~~~G~---L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +..+.+|.++.|.|.+ .+++.+  .+.|.+++...+    ..+.+  .....+|.   |.|.+++.+|+| .|+|.|.|
T Consensus       119 ~~~v~~G~~~~l~C~~~~g~P~~--~v~W~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n  191 (222)
T 4i0k_A          119 NKDLRPGNMVTITCSSYQGYPEA--EVFWKDGQGVPL----TGNVTTSQMANERGLFDVHSVLRVVLGANG-TYSCLVRN  191 (222)
T ss_dssp             -----CCSEEEEEEEEEEEBSCC--EEEEECTTSCBC----CSEEEEEEEECTTSCEEEEEEEEEECCTTC-EEEEEEEE
T ss_pred             CceecCCceEEEEEecccccCCC--eEEEEcCCCccC----CCCcceeEEcCCCCeEEEEEEEEEEeCCCC-EEEEEEEC
Confidence            4578899999999998 555444  899999554322    11112  22234554   899999999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEEecccc
Q psy9140          90 KLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .++.   .+..+.|.|.+++-
T Consensus       192 ~~g~---~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          192 PVLQ---QDAHGSVTITGQPL  209 (222)
T ss_dssp             TTTT---EEEEEEEECCC---
T ss_pred             CCCC---CceEEEEEEeCCcc
Confidence            9876   35577888887653

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.20  E-value=2.3e-11  Score=90.54  Aligned_cols=81  Identities=17%  Similarity=0.319  Sum_probs=49.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC------cEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG------ALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G------~L~I~~v~~~D~gg   81 (114)
                      +.+.+.+..  +.+|.++.|.|.+.++.++++.+.|+|||..+..   ....++....+|      .|.|.+++.+|+| 
T Consensus       223 P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~---~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G-  296 (327)
T 2wng_A          223 PTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT---ETASTVTENKDGTYNWMSWLLVNVSAHRDDV-  296 (327)
T ss_dssp             CEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEE---EECCSCEECTTSCEEEEEEEEC-------CC-
T ss_pred             CEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccC---cccCceEECCCCcEEEEEEEEEccccccCCC-
Confidence            335555444  7799999999999764433237999999997531   112233333333      4899999999995 


Q ss_pred             eeEEEEeeccCCc
Q psy9140          82 RYYCQTTHKLTGE   94 (114)
Q Consensus        82 ~Y~C~a~n~l~~~   94 (114)
                      .|+|.|.|..+.+
T Consensus       297 ~Y~C~a~N~~~~~  309 (327)
T 2wng_A          297 KLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEEEEEETTCCC
T ss_pred             EEEEEEEeCCCCC
Confidence            9999999986543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.20  E-value=1.2e-10  Score=93.98  Aligned_cols=85  Identities=16%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +.+..+.+|.++.|.|.+.+   +.+.+.|+|++..+     ..+.|+.+.. ++.|.|.+++.+|+| .|+|.|.|..+
T Consensus       474 ~~~~~v~~g~~v~l~C~~~~---~~~~i~W~~~g~~l-----~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g  544 (642)
T 1e07_A          474 NNSKPVEDKDAVAFTCEPEA---QNTTYLWWVNGQSL-----PVSPRLQLSNGNRTLTLFNVTRNDAR-AYVCGIQNSVS  544 (642)
T ss_pred             CCceeecCCCeEEEEEECCC---CCcEEEEEECCEeC-----CCCCcEEEcCCCcEEEEeecChhcCc-eEEEEeEcCCC
Confidence            44667889999999999963   22289999999854     4567888765 569999999999996 99999999876


Q ss_pred             CcEEeCCCeEEEEeccc
Q psy9140          93 GERKISPPSQVMVSEIA  109 (114)
Q Consensus        93 ~~~~~s~~a~L~V~~~~  109 (114)
                      ..  .|..+.|.|..++
T Consensus       545 ~~--~s~~~~l~V~~~p  559 (642)
T 1e07_A          545 AN--RSDPVTLDVLYGP  559 (642)
T ss_pred             Cc--cCCCEEEEEEeCC
Confidence            42  4557899998543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.20  E-value=5.4e-11  Score=87.37  Aligned_cols=88  Identities=15%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +.+.| +..|.+|+++.|.|.+.+.  + ..+.|+||+..+..      .+.....++.|.|.+|+.+|+| .|+|.|.|
T Consensus       105 i~~~p-~~~v~~G~~vtL~C~~~~~--~-~~~~w~k~g~~~~~------~~~~~~~~~~l~I~~v~~~d~G-~Y~C~a~n  173 (242)
T 1p6f_A          105 LSVHP-GPEVISGEKVTFYCRLDTA--T-SMFLLLKEGRSSHV------QRGYGKVQAEFPLGPVTTAHRG-TYRCFGSY  173 (242)
T ss_dssp             EEEES-CSEEETTCEEEEEEECTTS--C-SEEEEEECSSSCEE------EEEECSSEEEEEEEECCGGGCE-EEEEEEEE
T ss_pred             eEccC-CCccCCCCcEEEEEecCCC--C-CEEEEEECCCccCc------cccCCCceEEEEeCCCccccCE-EEEEEEEC
Confidence            44455 5678999999999998642  1 27899999985411      1112234679999999999995 99999998


Q ss_pred             ccCCcEEeCCCeEEEEecc
Q psy9140          90 KLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~  108 (114)
                      ........|....|.|+++
T Consensus       174 ~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          174 NNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             ETTEECCCCCCEEEEEEC-
T ss_pred             CCCcccCCCCCEEEEEecc
Confidence            6311123577899999864

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.20  E-value=8.9e-11  Score=84.32  Aligned_cols=95  Identities=19%  Similarity=0.319  Sum_probs=63.9

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee---------eccCCcEEEcc-----CCcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI---------IHSGGRYSITT-----AGALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~---------~~~~~r~~v~~-----~G~L~I   71 (114)
                      ...+....+.+|.+|.|.|.+.+...+...+.|+|++  ..+   +...         ...++||.+..     ++.|.|
T Consensus       131 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  210 (247)
T 1svz_A          131 LQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQI  210 (247)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEE
T ss_pred             EeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEE
Confidence            3444556799999999999996653211279999963  211   1000         01257888753     248999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCc--EEeCCCeEEEEe
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGE--RKISPPSQVMVS  106 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~  106 (114)
                      ++++.+|+| .|.|.|.|...++  ......++|.|+
T Consensus       211 ~~v~~~DsG-~Y~C~a~n~~~~~~~~~fg~gt~L~V~  246 (247)
T 1svz_A          211 NNLKNEDTA-TYFCVRDRHDYGEIFTYWGQGTTVTVS  246 (247)
T ss_dssp             CSCCGGGCE-EEEEEEEEGGGTEEEEEECCCEEEEEC
T ss_pred             CCCChhHCE-EEEEEEeccCCccceeEEcCCEEEEEe
Confidence            999999995 9999999963222  234568888875

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.20  E-value=4.3e-11  Score=84.74  Aligned_cols=95  Identities=23%  Similarity=0.360  Sum_probs=63.9

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee-----------eccCCcEEEcc-----CCcEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI-----------IHSGGRYSITT-----AGALH   70 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~-----------~~~~~r~~v~~-----~G~L~   70 (114)
                      .+|++..+.+|.+|.|.|.+.+...+...+.|+|++  ..   ++...           ....+||.+..     ++.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQ   84 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEE
Confidence            467778999999999999986542111279999853  21   11000           01247998874     34899


Q ss_pred             EeecCCCCCCeeeEEEEeeccCCc--EEeCCCeEEEEec
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTGE--RKISPPSQVMVSE  107 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~~  107 (114)
                      |++|+.+|+| .|.|.+.|..+..  ...+..+.|.|..
T Consensus        85 I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           85 MNTLRAEDSA-TYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             ECSCCGGGCE-EEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             ECcCCcccCe-EEEEEEeccCCcccceEeCCceEEEecc
Confidence            9999999995 9999999964210  0133466888874

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.19  E-value=3.4e-11  Score=89.15  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeee--------eeeccCCcEEEc--------cCCcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEAR--------SIIHSGGRYSIT--------TAGALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~--------~~~~~~~r~~v~--------~~G~L~I   71 (114)
                      ...|.+..+..|++|.|.|.+.+...+  .. .|+|+|++.....        +......|+.+.        .+++|.|
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I   83 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM   83 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEE
Confidence            457888899999999999998443222  22 5899999864210        122345677653        2468999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      .+++.+|+| .|+|.+.+...+.  .+..+.|.|..++
T Consensus        84 ~~v~~~D~G-~Y~C~v~~~~~~~--~~~~~~l~v~~~P  118 (313)
T 4fqp_A           84 FGLRVEDEG-NYTCLFVTFPQGS--RSVDIWLRVLAKP  118 (313)
T ss_dssp             CSCCGGGCE-EEEEEEECSSSCE--EEEEEEECCBBCC
T ss_pred             CcCChhhCE-EEEEEEeeccCcc--eeeeeeeeeccCC
Confidence            999999995 9999987543332  4445666665443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.19  E-value=2e-10  Score=83.75  Aligned_cols=95  Identities=17%  Similarity=0.267  Sum_probs=64.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee-ec----------cCCcEEEcc----CCcEEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI-IH----------SGGRYSITT----AGALHI   71 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~-~~----------~~~r~~v~~----~G~L~I   71 (114)
                      .+...|++..+.+|.+|+|.|.+.+   +...+.|+|.  +....... ..          .++||.+..    ++.|.|
T Consensus        29 ~v~~~p~~v~v~~G~~v~L~C~~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I  105 (270)
T 3qib_D           29 KVIQTPRYLVKGQGQKAKMRCIPEK---GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI  105 (270)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCT---TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred             eEEeCCCeEEEcCCCCEEEEEEecC---CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence            4556788899999999999999743   2128999982  21110000 00          012888763    457999


Q ss_pred             eecCCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~  107 (114)
                      ++|+.+|+| .|.|.+.+...+ ....+..+.|.|.+
T Consensus       106 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~l~V~~  141 (270)
T 3qib_D          106 QSSEAGDSA-LYLCASSLNWSQDTQYFGPGTRLLVLE  141 (270)
T ss_dssp             SSCCGGGCE-EEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred             CCCCHhHCe-EEEEEEecCCCccceEECCcEEEEEcc
Confidence            999999995 999999974221 22345577888876

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.19  E-value=6.8e-11  Score=91.72  Aligned_cols=96  Identities=20%  Similarity=0.299  Sum_probs=67.2

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-e-----------eccCCcEEEcc-----CCcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-I-----------IHSGGRYSITT-----AGALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-~-----------~~~~~r~~v~~-----~G~L~I   71 (114)
                      ..+|+...+.+|++|+|.|.+.+...+...+.|+|++  ..+... .           ....+||.+..     ++.|.|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (444)
T 1igt_B            4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQM   83 (444)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEE
Confidence            3567788999999999999996543111279999863  221100 0           01347998864     358999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+|+.+|+| .|+|.|.|..+.....+..++|.|.+
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (444)
T 1igt_B           84 SRLKSEDTA-MYYCARHGGYYAMDYWGQGTTVTVSS  118 (444)
T ss_dssp             CSCCGGGCE-EEEEEEECSSSCEEEEBCCEEEEECS
T ss_pred             CCCCHHHCE-EEEEEEecCCcccccccCcEEEEecC
Confidence            999999995 99999999754322455677888874

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.19  E-value=1.8e-10  Score=82.88  Aligned_cols=94  Identities=17%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee-------eccCCcEEEcc----CCcEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI-------IHSGGRYSITT----AGALHIRD   73 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~-------~~~~~r~~v~~----~G~L~I~~   73 (114)
                      +...|++..+.+|.+|.|.|.+.. . . ..+.|+|++  ..   ++...       ....+||.+..    ++.|.|++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~~-~-~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   78 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQTN-N-H-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILEL   78 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-C-C-SEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESS
T ss_pred             cccCCCeeEEeCCCcEEEEEEeCC-C-C-ceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEec
Confidence            345688899999999999999842 1 2 289999964  21   11100       01257998853    34899999


Q ss_pred             cCCCCCCeeeEEEEeeccC--CcEEeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKLT--GERKISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~--~~~~~s~~a~L~V~~  107 (114)
                      |+.+|+| .|.|.+.|..+  .....+..++|.|..
T Consensus        79 v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  113 (238)
T 1bec_A           79 ATPSQTS-VYFCASGGGRGSYAEQFFGPGTRLTVLE  113 (238)
T ss_dssp             CCGGGCE-EEEEEEESCTTCGGGCEECCCEEEEEES
T ss_pred             CCcccCE-EEEEEEecCCCCccccccCCCEEEEEec
Confidence            9999995 99999998632  111234566788875

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=99.19  E-value=2.4e-10  Score=74.87  Aligned_cols=94  Identities=17%  Similarity=0.267  Sum_probs=64.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee-----eccCCcEEEc--cC---CcEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI-----IHSGGRYSIT--TA---GALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~-----~~~~~r~~v~--~~---G~L~I~~v~   75 (114)
                      ...|....+.+|.+|.|.|...+....+ .+.|+|..  .   .++...     ....+||.+.  ++   ..|.|++++
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~~~-~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   82 (116)
T 1fo0_A            4 TQTQTSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   82 (116)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSC-EEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             CcCCCcEEEecCCcEEEEeEecCCCCCe-EEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            4457888999999999999986542111 79999853  2   121111     0125799883  22   269999999


Q ss_pred             CCCCCeeeEEEEeecc---CCcEEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKL---TGERKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l---~~~~~~s~~a~L~V~  106 (114)
                      .+|+| .|.|.+.+..   .....-...++|.|+
T Consensus        83 ~~DsG-~Y~C~~~~~~~~~~~~~~fg~GT~l~V~  115 (116)
T 1fo0_A           83 IEDSA-VYFCAMRGDYGGSGNKLIFGTGTLLSVK  115 (116)
T ss_dssp             GGGCE-EEEEEEECCCTTCSSCEEECCCEEEEEE
T ss_pred             hhhCE-EEEEEEEcCcCCCCceEEECCCcEEEEe
Confidence            99995 9999999731   223345567888886

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.19  E-value=5.8e-11  Score=87.41  Aligned_cols=83  Identities=11%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             eeEEEeCCeEEEEeec------CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe-
Q psy9140          16 NTFVLRGNIAVLQCNI------PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT-   88 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~------~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~-   88 (114)
                      +..+.+|.++.|.|.+      .+.+.+  .++|+|++..+.    ..+.|+.. .++.|.|.+++.+|+| .|+|.|. 
T Consensus       112 ~~~~~~g~~v~l~C~~~~~~~~~g~p~~--~i~W~k~~~~l~----~~~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~a~~  183 (315)
T 1itb_B          112 KQKLPVAGDGGLVCPYMEFFKNENNELP--KLQWYKDCKPLL----LDNIHFSG-VKDRLIVMNVAEKHRG-NYTCHASY  183 (315)
T ss_dssp             EEEEETTSCEEEECSSCTTTCTTTTCCC--CCEEEETTEECC----CCSSSEEE-ETTEEEESSCCGGGCE-EEEEEEEE
T ss_pred             ceEEecCCCeEEEEecccccccCCCCCC--EEEEEECCEECC----CccceEee-cCceEEEEeceehhCc-EEEEEEEc
Confidence            4678999999999998      554333  899999998642    23456644 4789999999999995 9999999 


Q ss_pred             eccCCcEEeCCCeEEEEe
Q psy9140          89 HKLTGERKISPPSQVMVS  106 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~  106 (114)
                      |..+.....+....|.+.
T Consensus       184 n~~g~~~~~~~~~~~~~~  201 (315)
T 1itb_B          184 TYLGKQYPITRVIEFITL  201 (315)
T ss_dssp             EETTEEEEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEEEEe
Confidence            666543222333444343

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.18  E-value=6.9e-11  Score=90.66  Aligned_cols=95  Identities=15%  Similarity=0.234  Sum_probs=67.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCC--cceEEEeeCC--eee---eee----eeccCCcEEEccC---CcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHN--LLLIAWLREG--VSE---ARS----IIHSGGRYSITTA---GALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~--~~~vsW~kd~--~~~---~~~----~~~~~~r~~v~~~---G~L~I~~v~   75 (114)
                      +...|.+..+.+|+++.|.|.+.+.+.+  ...+.|+|++  ..+   ++.    .....+||.+..+   +.|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            5566889999999999999998665432  0279999974  221   000    0112578987643   369999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+|+| .|+|.|.|..+.  ..+..++|.|..
T Consensus        84 ~~D~G-~Y~C~a~n~~~~--~~~~~~~l~V~~  112 (438)
T 1qgc_4           84 ADDVA-TYYCQQSNEVPL--TFGAGTKLDLKR  112 (438)
T ss_dssp             GGGCE-EEEEEECSSTTC--CBCCCEEEEECC
T ss_pred             CcCCe-eEEEEEecCCCc--cccCceeEEecC
Confidence            99995 999999997642  235577888864

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=99.18  E-value=1.7e-10  Score=76.02  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCC-CcceEEEeeCC--ee---eeeee----eccCCcEEEccCC---cEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNH-NLLLIAWLREG--VS---EARSI----IHSGGRYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~-~~~~vsW~kd~--~~---~~~~~----~~~~~r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      +|....+.+|++|.|.|...+... ....+.|+|..  ..   ++...    ....+||.+..++   .|.|++++.+|+
T Consensus         6 q~~~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~Ds   85 (120)
T 1oaq_L            6 QESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDE   85 (120)
T ss_dssp             ECSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             cCCcEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhC
Confidence            344588999999999999865431 11278998853  21   11100    0125799876433   699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      | .|.|.+.+.  +.......++|.|.+..
T Consensus        86 G-~Y~C~~~~~--~~~~fg~gt~L~V~~~~  112 (120)
T 1oaq_L           86 A-IYFCALWYS--NHLVFGGGTKLTVLGQP  112 (120)
T ss_dssp             E-EEEEEEEET--TEEEECCCEEEEECC--
T ss_pred             e-EEEEEEccC--CCcEECCCEEEEEcCCC
Confidence            5 999999985  23445668899998654

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=99.18  E-value=1.4e-10  Score=75.60  Aligned_cols=93  Identities=16%  Similarity=0.211  Sum_probs=64.2

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCC---CcceEEEeeCC--e---eeeeee----eccCCcEEEccCC---cEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNH---NLLLIAWLREG--V---SEARSI----IHSGGRYSITTAG---ALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~---~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~~G---~L~I~~v~   75 (114)
                      ...|+...+.+|.+|.|.|.+.+...   ....+.|+|..  .   .++...    ....+||.+..++   .|.|++++
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~   84 (113)
T 1dlf_L            5 TQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   84 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCC
T ss_pred             EEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCC
Confidence            34578889999999999999855431   11278999853  2   121100    0125799875432   69999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .+|+| .|.|.+.+..  ...-...++|.|+
T Consensus        85 ~~DsG-~Y~C~~~~~~--~~~fg~gT~l~V~  112 (113)
T 1dlf_L           85 AEDLG-VYFCSQSTHV--PFTFGSGTKLEIK  112 (113)
T ss_dssp             GGGCE-EEEEEECSSS--SCEECCCEEEEEC
T ss_pred             hHHCE-EEEEEEecCC--CcEECCCEEEEEc
Confidence            99995 9999999852  2235668888885

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=99.18  E-value=4.6e-10  Score=72.96  Aligned_cols=94  Identities=15%  Similarity=0.213  Sum_probs=64.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee----eccCCcEEEc--c---CCcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI----IHSGGRYSIT--T---AGALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~----~~~~~r~~v~--~---~G~L~I~~v~   75 (114)
                      ....|....+.+|.+|.|.|.+.+...+  .+.|+|...     .++...    ....+||.+.  +   +..|.|++++
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~--~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~   80 (112)
T 2z35_A            3 VTQTGGQVALSEEDFLTIHCNYSASGYP--ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ   80 (112)
T ss_dssp             EECSCSEEEEETTCCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCC
T ss_pred             eEeCCCcEEEcCCCCEEEEEEECCCCCC--eEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCC
Confidence            3456888899999999999998554222  799998542     121110    1125799884  2   3479999999


Q ss_pred             CCCCCeeeEEEEeecc-CCcEEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKL-TGERKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l-~~~~~~s~~a~L~V~  106 (114)
                      .+|+| .|.|.+.... .....-...++|.|+
T Consensus        81 ~~DsG-~Y~C~~~~~~~~~~~~fg~GT~l~V~  111 (112)
T 2z35_A           81 ESDSA-VYYCALSENYGNEKITFGAGTKLTIK  111 (112)
T ss_dssp             STTCS-EEEEEEECTTTTCCEEECCCEEEEEE
T ss_pred             hhhCE-EEEEEEEcCCCCceeEECCCEEEEEe
Confidence            99996 9999998311 123344567788876

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.18  E-value=2.2e-11  Score=88.67  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC----CcEEEeecCCCCCCeeeEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA----GALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~----G~L~I~~v~~~D~gg~Y~C   85 (114)
                      +.....+..|.+|+++.|.|.+.+      .++|+|++..+       +.|+....+    +.|.|.+++.+|+| .|+|
T Consensus         3 i~~~~~~~~v~~G~~v~L~C~~~~------~v~W~~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C   68 (289)
T 3mjg_X            3 VTPPGPELVLNVSSTFVLTCSGSA------PVVWERMSQEP-------PQEMAKAQDGTFSSVLTLTNLTGLDTG-EYFC   68 (289)
T ss_dssp             BCSSCSEEECCTTCCEEEEEEESS------CCEEEBTTBCC-------SEEEEECTTSCEEEEEEECSCCGGGCE-EEEE
T ss_pred             ecCCCCeEEEeCCCcEEEEEeccc------eEEEECCCCCc-------ccceeccCCCceeEEEEEccCChhhCE-EEEE
Confidence            344556677889999999999865      27999999853       245555443    47999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEecc
Q psy9140          86 QTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|.|..+.....+....|.|.+|
T Consensus        69 ~a~n~~g~~~~~~~~~~v~v~~p   91 (289)
T 3mjg_X           69 THNDSRGLETDERKRLYIFVPDP   91 (289)
T ss_dssp             ECCC------CCCEEEEEECCCT
T ss_pred             EEcccCCCCcCcEEeEEEEEECC
Confidence            99998743222233445555543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.18  E-value=7.7e-11  Score=84.36  Aligned_cols=95  Identities=16%  Similarity=0.279  Sum_probs=65.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCc--ceEEEeeCC--ee---eeeee--------eccCCcEEEcc-----CCcEEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNL--LLIAWLREG--VS---EARSI--------IHSGGRYSITT-----AGALHI   71 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~--~~vsW~kd~--~~---~~~~~--------~~~~~r~~v~~-----~G~L~I   71 (114)
                      .+|++..+.+|.+|.|.|.+.+.+...  ..+.|+|++  ..   ++...        ....+||.+..     ++.|.|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            457888999999999999996543211  279999853  22   11100        01247998863     368999


Q ss_pred             eecCCCCCCeeeEEEEeeccCC-----c-EEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTG-----E-RKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~-----~-~~~s~~a~L~V~~  107 (114)
                      ++|+.+|+| .|.|.+.|..++     . ...+..++|.|..
T Consensus        85 ~~v~~~D~G-~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~  125 (228)
T 3bae_H           85 TSVDTADTA-TYYCARRGFYGRKYEVNHFDYWGQGTTLTVSS  125 (228)
T ss_dssp             CSCCGGGCE-EEEEEEEEESTTCTTSEEEEEECCCEEEEECS
T ss_pred             cCCCcccCE-EEEEEEecCCCccccccceeeeCCcEEEEecC
Confidence            999999995 999999996431     1 1234568888874

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.17  E-value=6.5e-11  Score=86.50  Aligned_cols=76  Identities=9%  Similarity=0.100  Sum_probs=59.6

Q ss_pred             ccceeeccc-eeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCc-----EEEeecCCCCC
Q psy9140           7 SSDYEINTG-NTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA-----LHIRDTGMEDS   79 (114)
Q Consensus         7 ~~~~~v~~~-d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~-----L~I~~v~~~D~   79 (114)
                      .+.+...+. +..+.+|.++.|.|.+. +.+.+  .++|+|++..+     ..+.||.+..++.     |.|.+++.+|+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~--~v~W~~~~~~i-----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  178 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEI-----FEGPKYKMHIDRNTGIIEMFMEKLQDEDE  178 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSC--EEEEEETTEEE-----CSSSSCEEEEETTTTEEEEEESCCCGGGC
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCC--EEEEEECCEEC-----eeCCcEEEEEccCCCEEEEEEccCCcccC
Confidence            344555554 88899999999999997 54433  89999999854     4567888775443     99999999999


Q ss_pred             CeeeEEEEeec
Q psy9140          80 YIRYYCQTTHK   90 (114)
Q Consensus        80 gg~Y~C~a~n~   90 (114)
                      | .|+|.|.|.
T Consensus       179 G-~Y~C~~~~~  188 (312)
T 2y23_A          179 G-TYTFQLQDG  188 (312)
T ss_dssp             E-EEEEEEESS
T ss_pred             E-eEEEEEEeC
Confidence            5 999999874

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.17  E-value=8.9e-11  Score=87.44  Aligned_cols=100  Identities=18%  Similarity=0.287  Sum_probs=68.3

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEcc-----CC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITT-----AG   67 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~-----~G   67 (114)
                      .+....+|....+.+|++|.|.|.+.+.......+.|+|++  ..   ++...         ....+||.+..     ++
T Consensus        22 ~~~~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~  101 (291)
T 2gki_A           22 REVQLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTA  101 (291)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEE
T ss_pred             ccEEEEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEE
Confidence            34556678889999999999999986543111279999963  21   11100         11247888753     35


Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccCC--cEEeCCCeEEEEec
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLTG--ERKISPPSQVMVSE  107 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~  107 (114)
                      .|.|.+++.+|+| .|.|.+.|...+  ....+..++|.|..
T Consensus       102 sL~I~~v~~~DsG-~Y~C~~~~~~~g~~~~~~~~~~~L~V~~  142 (291)
T 2gki_A          102 YMELSSLTSEDSA-VYYCARGAYKRGYAMDYWGQGTSVTVSS  142 (291)
T ss_dssp             EEEECSCCGGGCE-EEEEEEECGGGTTCEEEECCCEEEEECC
T ss_pred             EEEECcCCHHHCE-EEEEEEeccccccccceeCCCcEEEEec
Confidence            7999999999995 999999997422  22334577888887

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.17  E-value=4.9e-11  Score=85.56  Aligned_cols=96  Identities=15%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCC--cc-eEEEeeCCeeeee---eeeccCCcEEEc-------------cCCcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHN--LL-LIAWLREGVSEAR---SIIHSGGRYSIT-------------TAGALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~--~~-~vsW~kd~~~~~~---~~~~~~~r~~v~-------------~~G~L~I~   72 (114)
                      ..|.+..+.+|++|.|.|.+.+.+.+  .. .+.|+|++.....   .....+++....             .++.|.|.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            45667789999999999998543322  11 5999997432100   000011111111             23459999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +|+.+|+| .|+|.+.|..+   ..+..+.|.|..++.+
T Consensus        88 ~v~~~D~G-~Y~C~~~~~~~---~~~~~~~L~V~~~P~v  122 (248)
T 3pv7_A           88 GIQLEEAG-EYRCEVVVTPL---KAQGTVQLEVVASPAS  122 (248)
T ss_dssp             SCCGGGCE-EEEEEEEETTE---EEEEEEEEEEEBCCEE
T ss_pred             CCCHHHCe-EEEEEEEeCCc---cceeEEEEEEecCCce
Confidence            99999995 99999999643   2455778888876543

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=99.17  E-value=2.5e-10  Score=76.59  Aligned_cols=100  Identities=16%  Similarity=0.132  Sum_probs=68.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee----eccCCcEEEcc---CCcEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI----IHSGGRYSITT---AGALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~---~G~L~I~~v~~~D   78 (114)
                      ..+|....+.+|.+|.|.|...+.......+.|+|..  .   .++...    ....+||.+..   +..|.|++++.+|
T Consensus         4 v~Qp~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~D   83 (123)
T 3t0v_A            4 LTQSPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRSED   83 (123)
T ss_dssp             BEECCCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             cCccCeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCCHHH
Confidence            3457788999999999999985532111278999842  2   122110    01247998753   3479999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +| .|.|.+.+.......-...++|.|++..+.
T Consensus        84 sG-~Y~C~~~~~~~~~~~fG~GT~l~V~~~~~~  115 (123)
T 3t0v_A           84 EA-DYYCLSWDDSLNGWVFGGGTKVTVLDAASG  115 (123)
T ss_dssp             CE-EEEEEEEETTTTEEEEBCCEEEEECCCC--
T ss_pred             CE-EEEEEEEcCCCCceEECCCEEEEEccCCCC
Confidence            95 999999985322345677899999987653

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.17  E-value=1.4e-10  Score=84.12  Aligned_cols=99  Identities=20%  Similarity=0.262  Sum_probs=67.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--eeeeee-------eccCCcEEEcc-----CCcEEEeec
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SEARSI-------IHSGGRYSITT-----AGALHIRDT   74 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~~~~~-------~~~~~r~~v~~-----~G~L~I~~v   74 (114)
                      .+...|.+..+.+|++|.|.|.+.+.... ..+.|+|++.  .+....       ....+||.+..     ++.|.|.++
T Consensus       138 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  216 (259)
T 3omz_A          138 KVTQAQSSVSMPVRKAVTLNCLYETSWWS-YYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISAL  216 (259)
T ss_dssp             EEECCCCCEEEETTCCEEECCEEECCCSS-CEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSC
T ss_pred             eeEEeCCEEEEcCCCCEEEEEECCCccCC-ceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCC
Confidence            45667788899999999999987542112 2899998532  111000       01257998873     345999999


Q ss_pred             CCCCCCeeeEEEEeecc--CCcEEeCCCeEEEEeccc
Q psy9140          75 GMEDSYIRYYCQTTHKL--TGERKISPPSQVMVSEIA  109 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l--~~~~~~s~~a~L~V~~~~  109 (114)
                      +.+|+| .|.|.+.+..  .++......++|.|++..
T Consensus       217 ~~~DsG-~Y~C~~~~~~~~~~~~~fg~GT~l~v~~~~  252 (259)
T 3omz_A          217 QLEDSA-KYFCALGESLTRADKLIFGKGTRVTVEPRS  252 (259)
T ss_dssp             CGGGCS-EEEEEEESCSSTTCCCEECCCEEEEEEC--
T ss_pred             ChhHCE-EEEEEEeCccCCCCceEECCCCEEEEeeCc
Confidence            999996 9999998531  234456678899998654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.17  E-value=1.7e-11  Score=79.58  Aligned_cols=90  Identities=16%  Similarity=0.237  Sum_probs=62.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +.+.+.|.. .|.+|++++|.|.+++.  + ....|+|++..+.      .+|+... .+..|.|.+|+.+|+| .|+|.
T Consensus         6 P~i~~~p~~-~v~~G~~VtL~C~~~~~--~-~~~~w~k~g~~~~------~~~~~~~~~~~~l~I~~v~~~dsG-~Y~C~   74 (105)
T 2vsd_A            6 PSLSLHPSQ-GVSLGDTVTLRCHLPRM--A-AWVQLWLNGTLRF------DKEKDKEQDAAEFSFAVTNLEDAG-TYQCR   74 (105)
T ss_dssp             CEEEEESCS-SCCTTCEEEEEEECCSS--C-EEEEEEETTEEEE------EEEECTTCSEEEEEEECCSGGGCE-EEEEE
T ss_pred             CEEEeCCCC-CcCcCCCEEEEEEcCCC--C-cEEEEEECCccce------eeeccCCCCEEEEEECCCCHHHCe-EEEEE
Confidence            446677766 78999999999998653  1 2678999987531      1222211 2347999999999995 99999


Q ss_pred             EeeccCC-cEEeCCCeEEEEecc
Q psy9140          87 TTHKLTG-ERKISPPSQVMVSEI  108 (114)
Q Consensus        87 a~n~l~~-~~~~s~~a~L~V~~~  108 (114)
                      +.|.... ....|.+..|.|...
T Consensus        75 ~~n~~~~~~s~~Sdpl~L~V~~~   97 (105)
T 2vsd_A           75 YQVSEPLWTSNQSDPVELVLTIE   97 (105)
T ss_dssp             EEEETTEEECCCCCCEEECCC--
T ss_pred             EEcCCCCcccCCCCCEEEEEEEe
Confidence            9996310 113577888888753

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.16  E-value=1e-10  Score=89.68  Aligned_cols=97  Identities=20%  Similarity=0.289  Sum_probs=66.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee------------eccCCcEEEccC-----CcEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI------------IHSGGRYSITTA-----GALH   70 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~------------~~~~~r~~v~~~-----G~L~   70 (114)
                      +...|.+..+.+|.+|.|.|.+.+.+.+...+.|+|+  +..+....            ....+||.+..+     +.|.
T Consensus       221 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  300 (438)
T 1qgc_4          221 MLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQ  300 (438)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred             EEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEE
Confidence            4456778889999999999999765421227999997  44321100            013579988753     3899


Q ss_pred             EeecCCCCCCeeeEEEEeeccCC--cEEeCCCeEEEEec
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTG--ERKISPPSQVMVSE  107 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~  107 (114)
                      |.+++.+|+| .|+|.|.|..++  ....+..+.|.|..
T Consensus       301 I~~v~~~D~G-~Y~C~a~n~~~~~~~~~~~~~~~l~V~~  338 (438)
T 1qgc_4          301 MSSLRSADTA-MYYCVRREDGGDEGFAYWGQGTVVTVSA  338 (438)
T ss_dssp             ECSCCGGGCC-EEEEEECCSSSCCCCCSBCCCEEEEECS
T ss_pred             ECCCChhhCE-EEEEEEEccCCCccceeeCCCEEEEEec
Confidence            9999999995 999999995431  11133467888873

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.16  E-value=5.3e-11  Score=82.66  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=50.9

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCc---EEEeecCCCCCCeeeEEEEeeccC
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA---LHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~---L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +|..+.|.|.+.++.++ +.+.|+|++..+     ..++||.+..+|.   |.|.+++.+|+| .|+|.|.|..+
T Consensus        16 ~~~~~~l~C~~~~~~p~-~~i~W~~~g~~i-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~n~~~   83 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVED-LKVNWSHNGSAI-----RYSDRVKTGVTGEQIWLQINEPTPNDKG-KYVMELFDGKT   83 (212)
T ss_dssp             CSSEEEEEEEBSSCCSS-CEEEEEETTEEC-----CCCSSEEEEEETTEEEEEEESCCGGGCE-EEEEEEECSSC
T ss_pred             cCceEEEEEEEeccCCC-ceEEEEECCEEc-----cCCCeEEEEEeCCEEEEEECCCCcccCE-EEEEEEecCCc
Confidence            67788888888765322 289999999854     4568888765554   999999999995 99999999654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.16  E-value=4.2e-11  Score=84.07  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=62.5

Q ss_pred             ceeEEEeCCeEEEEeecCCCCC--Cc-ceEEEeeCCeeeeee--------eeccCCcEEEcc------CCcEEEeecCCC
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNH--NL-LLIAWLREGVSEARS--------IIHSGGRYSITT------AGALHIRDTGME   77 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~--~~-~~vsW~kd~~~~~~~--------~~~~~~r~~v~~------~G~L~I~~v~~~   77 (114)
                      +...+.+|+++.|.|.+.+.+.  .. ..+.|+|++......        .....+|+.+..      ++.|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3456789999999999865431  11 289999987543110        112357888876      688999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |+| .|+|.+.|.-.    .+....|.|..+
T Consensus        83 D~G-~Y~C~~~~~~~----~~~~~~l~V~~~  108 (222)
T 4i0k_A           83 DEG-SYTCFVSIQDF----DSAAVSLQVAAP  108 (222)
T ss_dssp             GCS-CEEEEEEECCC----CCCCCCCCCCBC
T ss_pred             cCE-EEEEEEEeCCC----ceEEEEEEEEcC
Confidence            996 99999998521    344566666644

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=99.16  E-value=6.2e-11  Score=77.16  Aligned_cols=88  Identities=20%  Similarity=0.364  Sum_probs=59.0

Q ss_pred             ccceeEEEeCCeEEEEeecC-CCCCCcceEEEeeCC--e---eeeeee--e-------cc-CCcEEEccCC---cEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREG--V---SEARSI--I-------HS-GGRYSITTAG---ALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~--~---~~~~~~--~-------~~-~~r~~v~~~G---~L~I~~   73 (114)
                      .|....+.+|.+|.|.|.+. +...+  .+.|+|..  .   .++...  .       .. .+||.+..++   .|.|++
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~~~~~--~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~   82 (111)
T 2qhl_A            5 ELHVKTVKRGENVTMECSMSKVKDKD--KLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIG   82 (111)
T ss_dssp             BCEEEECCTTCCEEECCBCTTCSCGG--GEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESS
T ss_pred             CCceEEEeCCCCEEEEEEccCCcccc--eEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECC
Confidence            46778899999999999985 44222  79999853  1   222100  0       01 6899886433   699999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      ++.+|+| .|.|.+.+.  ....-...++|.|
T Consensus        83 ~~~~DsG-~Y~C~~~~~--~~~~fg~GT~l~V  111 (111)
T 2qhl_A           83 TREDDGG-EYFCGEVEG--NTIKFTSGTRLQF  111 (111)
T ss_dssp             CCGGGCE-EEEEEEEET--TEEEEEEEEEEEC
T ss_pred             CChhHCE-EEEEEEccC--CeeEEcCceEEeC
Confidence            9999995 999999984  2222333445543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.16  E-value=8.8e-11  Score=82.09  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=48.7

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEee-cCCCCCCeeeEEEEeeccCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRD-TGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~-v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      ..+.+|+++.|.|.+.+  .+  .+.|+||+..+     ..+      .++.|.|.+ ++.+|+| .|+|.|.|..+.
T Consensus         9 ~v~~~G~~v~L~C~~~~--~~--~i~W~k~g~~l-----~~~------~~~~L~I~~~~~~~D~G-~Y~C~a~n~~g~   70 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS--DE--NLKWEKNGQEL-----PQK------HDKHLVLQDFSEVEDSG-YYVCYTPASNKN   70 (186)
T ss_dssp             EEEEETTEEEEECSSCC--CT--TCEEEETTEEE-----CSC------CCSEEEEESCCTTTSCE-EEEEECSSCCCC
T ss_pred             EEEeCCcEEEEEEeCCC--CC--ceEEEECCEEC-----CCC------CCCEEEECCCCccccCE-EEEEEEEeCCCc
Confidence            34578999999999965  23  48999999864     111      367899999 9999995 999999998654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.16  E-value=2.2e-11  Score=98.63  Aligned_cols=88  Identities=15%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             ccceeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeeee-----ccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSII-----HSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~~-----~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .|.+..+.+|.++.|.|.+. +.+.+  .++|+|++..+.....     ..+.+. ...++.|.|.+|+.+|+| .|+|.
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p--~i~W~k~g~~l~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~DsG-~Y~C~  308 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGF--GLTWELENKALEEGNYFEMSTYSTNRT-MIRILFAFVSSVARNDTG-YYTCS  308 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCC--CEEEECSSSCCCGGGEEEEEEEETTTE-EEEEEEEEESSCCGGGCE-EEEEE
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCe--EEEEEECCEECCCCceeeeeeeccCcc-eeeEEEEEEccCCcccCe-EEEEE
Confidence            67788999999999999995 54333  8999999986421100     001121 223577999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEecccc
Q psy9140          87 TTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.      .+..+.|.|.+++.
T Consensus       309 a~N~------~~~~~~L~V~~~p~  326 (527)
T 3qs9_E          309 SSKH------PSQSALVTIVEKGF  326 (527)
T ss_dssp             ETTE------EEEEEEEEEC--CE
T ss_pred             EEeC------CCceEEEEEEccCc
Confidence            9997      35567888876553

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.16  E-value=8.1e-11  Score=80.91  Aligned_cols=73  Identities=18%  Similarity=0.282  Sum_probs=53.6

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee---------eccCCcEEEc----cCCc--EEEeecCCCCCC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI---------IHSGGRYSIT----TAGA--LHIRDTGMEDSY   80 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~---------~~~~~r~~v~----~~G~--L~I~~v~~~D~g   80 (114)
                      ...+.+|.++.|.|.+.+.+.+  .+.|+|++..++...         ....+|+.+.    .+|.  |.|.+++.+|+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G   81 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSI--QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   81 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCC--CEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             cEEEeCCCCEEEEEEEcCCCce--EEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCE
Confidence            4578899999999998754333  899999987432110         1125677765    3454  999999999995


Q ss_pred             eeeEEEEeecc
Q psy9140          81 IRYYCQTTHKL   91 (114)
Q Consensus        81 g~Y~C~a~n~l   91 (114)
                       .|+|.+.|..
T Consensus        82 -~Y~C~~~~~~   91 (184)
T 2ny1_B           82 -TYICEVEDQK   91 (184)
T ss_dssp             -EEEEEETTEE
T ss_pred             -EEEEEEEcCC
Confidence             9999999863

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.16  E-value=1.8e-11  Score=94.58  Aligned_cols=74  Identities=14%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      |++..+.+|.++.|.|.+.+.+.+  .++|+||+..             ++++|.+.  +++.+|+| .|+|.|.|.++.
T Consensus       377 p~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~g~~-------------~~~~g~~~--~v~~~d~G-~Y~C~a~N~~G~  438 (450)
T 1z7z_I          377 PGNWTWPENSQQTPMCQAWGNPLP--ELKCLKDGTF-------------PLPIGESV--TVTRDLEG-TYLCRARSTQGE  438 (450)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCC--EEEEEETTTE-------------ECCTTSCE--ECCGGGCE-EEEEEEEETTEE
T ss_pred             CCceeEcCCCeEEEEEecccCCCC--cEEEEECCcc-------------cCCCCCeE--eEehhhCe-EEEEEEEeCCCc
Confidence            378899999999999999776555  8999999873             23456655  79999995 999999999764


Q ss_pred             cEEeCCCeEEEEecc
Q psy9140          94 ERKISPPSQVMVSEI  108 (114)
Q Consensus        94 ~~~~s~~a~L~V~~~  108 (114)
                         .+..+.|.|..|
T Consensus       439 ---~~~~~~l~V~~~  450 (450)
T 1z7z_I          439 ---VTREVTVNVLSP  450 (450)
T ss_dssp             ---EEEEEEEEEECC
T ss_pred             ---eeEEEEEEEEcC
Confidence               566889998764

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.15  E-value=4.2e-11  Score=83.72  Aligned_cols=60  Identities=17%  Similarity=0.368  Sum_probs=48.0

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      +.+|.++.|.|.+|   .+  .++|+||+..+     ....+    .++.|.|.+++.+|+| .|+|.|.|..+.
T Consensus       119 ~~~G~~v~l~C~~p---~p--~i~W~k~g~~i-----~~~~~----~~~~L~i~~v~~~D~G-~Y~C~a~N~~g~  178 (186)
T 1jbj_A          119 SRGDGSVLLTCGLT---DK--TIKWLKDGSII-----SPLNA----TKNTWNLGNNAKDPRG-TYQCQGAKETSN  178 (186)
T ss_dssp             CSSSCEEEEECSSS---CS--CEEEEETTEEC-----CCSSC----CSSCCEEEETTSCCEE-EEEEEESSCEEE
T ss_pred             cCCCCeEEEEeeCC---CC--eEEEEECCEEC-----cccCC----CcceEEECCCCcCcCE-EEEEEEEcCcCC
Confidence            34999999999983   23  79999999864     12222    4789999999999995 999999998753

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.15  E-value=1.4e-10  Score=83.67  Aligned_cols=94  Identities=19%  Similarity=0.174  Sum_probs=63.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-ee----------ccCCcEEEcc-----CCcEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-II----------HSGGRYSITT-----AGALHI   71 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-~~----------~~~~r~~v~~-----~G~L~I   71 (114)
                      +...+.+..+.+|.+|.|.|.+.+.+.+...+.|+|++  ..+... ..          ..++||.+..     .+.|.|
T Consensus       125 ~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I  204 (242)
T 2znx_A          125 QLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDL  204 (242)
T ss_dssp             EEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEE
T ss_pred             eeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEE
Confidence            34455566799999999999996543111279999953  221100 00          1267898863     248999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+++.+|+| .|+|.|.|.+.    ....++|.|...
T Consensus       205 ~~v~~~D~G-~Y~C~a~~~~~----fG~gt~l~v~~~  236 (242)
T 2znx_A          205 NSVTTEDTA-TYYCANXDGDY----XGQGTLVTVSAA  236 (242)
T ss_dssp             CSCCGGGCE-EEEEEETTSSC----BCCCEEEEECCC
T ss_pred             CCCCcCcCE-EEEEeccCCcc----cCCCeEEEEEec
Confidence            999999995 99999998531    355778887653

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=99.14  E-value=2.9e-10  Score=76.04  Aligned_cols=97  Identities=22%  Similarity=0.287  Sum_probs=64.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--eeeeeeeccCCcEEEc-----cCCcEEEeecCCCCCCeee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SEARSIIHSGGRYSIT-----TAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~~~~~~~~~~r~~v~-----~~G~L~I~~v~~~D~gg~Y   83 (114)
                      ...|....+.+|.+|.|.|.+.+...+...+.|+|...  .... ....++||.+.     .+..|.|++++.+|+| .|
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~-~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG-~Y   81 (121)
T 2i24_N            4 DQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEE-SISDGGRYVETVNRGSKSFSLRINDLTVKDSG-TY   81 (121)
T ss_dssp             EEECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCE-EECSBTTEEEEEETTTTEEEEEECSCCGGGCE-EE
T ss_pred             EECCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCcee-eEecCCCeEEEecCCCCEEEEEECCCChhhCE-EE
Confidence            45588889999999999999854321212789998642  1100 12346899763     1347999999999995 99


Q ss_pred             EEEEeeccC--------CcEEeCCCeEEEEeccc
Q psy9140          84 YCQTTHKLT--------GERKISPPSQVMVSEIA  109 (114)
Q Consensus        84 ~C~a~n~l~--------~~~~~s~~a~L~V~~~~  109 (114)
                      .|.+....+        ....-...++|.|++..
T Consensus        82 ~C~~~~~~~~~~~~~~~~~~~fG~GT~l~v~~~~  115 (121)
T 2i24_N           82 RCKPESRYGSYDAVCAALNDQYGGGTVVTVNAAA  115 (121)
T ss_dssp             EEEEEESSGGGCHHHHHHTTCCCCCEEEEEECC-
T ss_pred             EEEEecCCccccccccceeeEECCCeEEEEcccc
Confidence            999985211        01123457889888654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.14  E-value=6.3e-11  Score=83.01  Aligned_cols=82  Identities=10%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcE--EEccCCcEEEe---ecCCCCCCeeeEEEEeeccC
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRY--SITTAGALHIR---DTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~--~v~~~G~L~I~---~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .+.+|..+.|.|.+.+++.+  .++|.++++..+    ....+.  ....+|.+.+.   .++.+|.| .|+|.|.|.++
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p--~i~W~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g-~Y~C~a~n~~g  199 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKA--EVIWTSSDHQVL----SGKTTTTNSKREEKLFNVTSTLRINTTTNE-IFYCTFRRLDP  199 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCC--EEEEEETTCCEE----CCEEEEEECC----CEEEEEEEEEECCTTC-EEEEEEEETTT
T ss_pred             eecCCCcEEEEEEecCCCCC--eEEEEECCCcee----cCccceEEEcCCCCCEEEEEEEEEeccCCc-EEEEEEEeCcc
Confidence            57789999999999776544  899999944322    122222  22334554444   56778985 99999999987


Q ss_pred             CcEEeCCCeEEEEeccc
Q psy9140          93 GERKISPPSQVMVSEIA  109 (114)
Q Consensus        93 ~~~~~s~~a~L~V~~~~  109 (114)
                      .   .+..+.|.|.+++
T Consensus       200 ~---~~~~~~l~v~~~p  213 (222)
T 3sbw_C          200 E---ENHTAELVIPELP  213 (222)
T ss_dssp             T---EEEEEEEECCCC-
T ss_pred             c---eeeEEEEEecCCc
Confidence            5   3557788887544

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.14  E-value=1.4e-11  Score=86.39  Aligned_cols=81  Identities=19%  Similarity=0.299  Sum_probs=55.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~g   80 (114)
                      +.+.+.+....+.+|+++.|.|.+.++.++++.++|+||+..+...       ....++.|.+.  ..|.|.+++.+|+|
T Consensus       112 P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~G  189 (210)
T 1lk3_L          112 PTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMS--STLSLTKADYESHN  189 (210)
T ss_dssp             CEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCC
T ss_pred             CeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEE--EEEEEChHHhccCC
Confidence            3445545444456899999999996543222279999999865211       01123444433  47999999999995


Q ss_pred             eeeEEEEeecc
Q psy9140          81 IRYYCQTTHKL   91 (114)
Q Consensus        81 g~Y~C~a~n~l   91 (114)
                       .|+|.|.|..
T Consensus       190 -~Y~C~a~n~~  199 (210)
T 1lk3_L          190 -LYTCEVVHKT  199 (210)
T ss_dssp             -EEEEEEECTT
T ss_pred             -cEEEEEEecC
Confidence             9999999974

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=99.14  E-value=5.5e-11  Score=77.46  Aligned_cols=92  Identities=16%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC-------eeeeee-----eeccCCcEEEcc-----CCcEEEeecC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG-------VSEARS-----IIHSGGRYSITT-----AGALHIRDTG   75 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~-------~~~~~~-----~~~~~~r~~v~~-----~G~L~I~~v~   75 (114)
                      .|....+.+|.+|.|.|...........+.|.|..       ..+++.     .....+||.+..     +.+|.|+|++
T Consensus         3 sp~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   82 (115)
T 2or7_A            3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTV   82 (115)
T ss_dssp             ---CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCC
T ss_pred             CccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCC
Confidence            46778899999999999984321111178999985       233221     112467998642     3579999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+| .|.|.+.+....   .....+|.|..+
T Consensus        83 ~~DsG-~Y~C~v~~~~~~---~~~~v~L~V~~~  111 (115)
T 2or7_A           83 VGDGG-PYCCVVEIPGAF---HFVDYMLEVKPE  111 (115)
T ss_dssp             GGGCE-EEEEEECCTTSC---EEEEEEEEEESC
T ss_pred             HHHCE-EEEEEEECCCce---eEEEEEEEEcCC
Confidence            99995 999999975322   133556666543

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=99.14  E-value=4.8e-10  Score=73.20  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC----CCcceEEEeeCCee---eeeee-------eccCCcEEEcc-----CCcEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN----HNLLLIAWLREGVS---EARSI-------IHSGGRYSITT-----AGALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~----~~~~~vsW~kd~~~---~~~~~-------~~~~~r~~v~~-----~G~L~I~~   73 (114)
                      .|+...+.+|.+|.|.|......    .....+.|+|....   ++...       ....+||.+..     +.+|.|++
T Consensus         6 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~v~W~~~~~g~~~~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (119)
T 1qfo_A            6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             cCCEEEEecCCcEEEEEEeeCCCccCCCCCeEEEEEEcCCCCCCEEEECCCCcccCccceeeEEEeCCCCCCEEEEEEcc
Confidence            56777899999999999973211    11127899997531   22111       11247998853     34799999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ++.+|+| .|.|.+.+.-..........+|.|.+
T Consensus        86 v~~~Dsg-~Y~C~v~~~~~~~~~~~~~~~L~V~~  118 (119)
T 1qfo_A           86 LKPEDSG-TYNFRFEISDSNRWLDVKGTTVTVTT  118 (119)
T ss_dssp             CCGGGCE-EEEEEEECC-CCEEECSSCEEEEEEC
T ss_pred             CCcccCc-eEEEEEEeCCCceecccCCeEEEEec
Confidence            9999995 99999987532222233467888864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.14  E-value=1.3e-10  Score=86.01  Aligned_cols=94  Identities=20%  Similarity=0.315  Sum_probs=65.1

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeee---------eeccCCcEEEccCC-----cEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARS---------IIHSGGRYSITTAG-----ALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~---------~~~~~~r~~v~~~G-----~L~I~~   73 (114)
                      +|.+..+.+|++|+|.|.+.+...+...+.|+|...  .   ++..         .....+||.+..++     .|.|++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            6 QSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            388899999999999999866422212799998431  1   1100         01124699887443     699999


Q ss_pred             cCCCCCCeeeEEEEeecc------CCcEEeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKL------TGERKISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l------~~~~~~s~~a~L~V~~  107 (114)
                      ++.+|+| .|.|.+.|..      ......+..++|.|.+
T Consensus        86 v~~~DsG-~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~  124 (280)
T 3fku_X           86 LRSEDTA-VYYCARSPSYICSGGTCVFDHWGQGTLVTVSS  124 (280)
T ss_dssp             CCSTTCE-ECCEEECSSSSSSSTTCCCCEECCCCEEEECC
T ss_pred             CChhhCE-EEEEEEecCCccccccccccEECCCEEEEEcC
Confidence            9999995 9999999861      1122355678899987

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.14  E-value=8.6e-11  Score=87.34  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=64.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcE-EEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRY-SITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~-~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +.+...|. ..|.+|++++|.|.+.+. .  ..+.|+||+..+...  ....++ ....++.|.|.+|+.+|+| .|+|.
T Consensus         8 P~i~~~P~-~~V~~G~~VtL~C~~~~~-~--~~~~W~k~g~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~   80 (257)
T 1b6u_A            8 PSLLAHPG-PLVKSEETVILQCWSDVR-F--QHFLLHREGKFKDTL--HLIGEHHDGVSKANFSIGPMMQDLAG-TYRCY   80 (257)
T ss_dssp             CEECCBSC-SEEESSCCEEEEEEESSC-C--SEEEEEEESTTCEEE--EEECBCCTTCEEEEEEECSCCTTTCE-EEEEE
T ss_pred             CEEEEcCC-CEecCCCCEEEEEecCCC-C--cEEEEEECCCCCCcc--eeeeeccCCCceEEEEeecCCcccCE-EEEEe
Confidence            34666775 789999999999998531 1  278999998754211  111111 1124678999999999995 99999


Q ss_pred             EeeccCC--cEEeCCCeEEEEecc
Q psy9140          87 TTHKLTG--ERKISPPSQVMVSEI  108 (114)
Q Consensus        87 a~n~l~~--~~~~s~~a~L~V~~~  108 (114)
                      +.|...+  ....|..+.|.|.+.
T Consensus        81 a~~~~~~~~~s~~S~~~~L~V~~~  104 (257)
T 1b6u_A           81 GSVTHSPYQLSAPSDPLDIVITGL  104 (257)
T ss_dssp             EECSSCTTSCCCCCCCEEEEEECS
T ss_pred             EeccCCCccccccCCCEEEecccC
Confidence            9875332  123466889999853

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=99.14  E-value=2.7e-10  Score=77.59  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCC-CcceEEEeeCCe--e---eeee--e--eccCCcEEEccCC---cEEEeec
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNH-NLLLIAWLREGV--S---EARS--I--IHSGGRYSITTAG---ALHIRDT   74 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~-~~~~vsW~kd~~--~---~~~~--~--~~~~~r~~v~~~G---~L~I~~v   74 (114)
                      +.-..+|....+.+|.+|.|.|.+..... ....+.|+|...  .   |+..  .  ....+||.+..+.   .|.|+++
T Consensus         6 ~~~v~q~~~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v   85 (135)
T 1p4b_L            6 DAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGA   85 (135)
T ss_dssp             CCCEECCSEEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESC
T ss_pred             ceeEEECCcEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCC
Confidence            34445566689999999999999854321 112789998532  1   1110  0  0125799886433   7999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +.+|+| .|.|.+.+.  ........++|.|++..
T Consensus        86 ~~~DsG-~Y~C~~~~~--~~~~fg~GT~L~V~~~~  117 (135)
T 1p4b_L           86 QTEDEA-IYFCALWYS--NHWVFGGGTKLTVLGGG  117 (135)
T ss_dssp             CGGGCE-EEEEEEECS--SCEEECCCEEEEEC---
T ss_pred             ChhHCE-EEEEEEecC--CCCEECCCEEEEEEcCC
Confidence            999995 999999975  23445678899998654

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=74.90  Aligned_cols=94  Identities=19%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCee-----eeeeee---ccCCcEEEcc---C--CcEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVS-----EARSII---HSGGRYSITT---A--GALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~-----~~~~~~---~~~~r~~v~~---~--G~L~I~~v~~~D~   79 (114)
                      .|+...+.+|.+|.|.|...+....+ .+.|+|....     ++....   ...+||.+..   +  ..|.|++++.+|+
T Consensus         2 ~p~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds   80 (110)
T 2q87_A            2 KARTVAGPVGGSLSVQCPYEKEHRTL-NKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDA   80 (110)
T ss_dssp             EEEEEEECTTSCEEEEEECCGGGTTS-EEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CCcEEEEeCCCcEEEEeEecCCcCCc-eEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHC
Confidence            46778899999999999985432212 7999997521     111000   1357998852   2  3799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      | .|.|.+.+...+. ......+|.|..++
T Consensus        81 G-~Y~C~~~~~~~g~-~~~~~~~v~v~V~p  108 (110)
T 2q87_A           81 G-TYWCGVDTPWLQD-FHDPVVEVEVSVFP  108 (110)
T ss_dssp             E-EEEEEEECTTSCC-BCCCSEEEEEEEC-
T ss_pred             E-EEEEEEecCccCc-cCCccEEEEEEEec
Confidence            5 9999999875220 01335566665443

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.13  E-value=2.6e-10  Score=80.79  Aligned_cols=93  Identities=22%  Similarity=0.388  Sum_probs=62.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--ee--e-eee-----------eccCCcEEEccCC-----cEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SE--A-RSI-----------IHSGGRYSITTAG-----ALH   70 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~--~-~~~-----------~~~~~r~~v~~~G-----~L~   70 (114)
                      .+|....|.+|.+|.|.|.+.+...+...+.|+|...  ..  + ...           ....+||.+..++     .|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQ   84 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEE
T ss_pred             EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEE
Confidence            4567788999999999999865321112899997431  11  1 000           0124899987554     499


Q ss_pred             EeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |++|+.+|+| .|.|.+.|... ....+..+.|.|.
T Consensus        85 I~~v~~~DsG-~Y~C~~~~~~~-~~~~~~~~~l~V~  118 (221)
T 3m8o_H           85 MNSLKSDDTA-MYYCVIRGDVY-NRQWGQGTLVTVS  118 (221)
T ss_dssp             ECSCCGGGCE-EEEEEEESCTT-CCCBBCCEEEEEC
T ss_pred             ECCCCHHHCE-EEEEEEECCCh-hheECCCEEEEEe
Confidence            9999999995 99999998621 1123456678886

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.13  E-value=1.4e-10  Score=84.46  Aligned_cols=94  Identities=21%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--ee--e-eee---------eccCCcEEEccCCc-----EEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SE--A-RSI---------IHSGGRYSITTAGA-----LHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~--~-~~~---------~~~~~r~~v~~~G~-----L~I~   72 (114)
                      .+|+...|.+|++|.|.|.+.++..+...+.|+|...  ..  + ...         ....+||.+..++.     |.|+
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMS   84 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEEC
T ss_pred             EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            4577889999999999999854322222789998431  11  1 000         01247998875443     9999


Q ss_pred             ecCCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.|.... ....+..++|.|.
T Consensus        85 ~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~l~V~  118 (253)
T 3liz_H           85 SLKSEDTA-MYYCTRDPAGRAWFAYWGQGTLVTVS  118 (253)
T ss_dssp             SCCGGGCE-EEEEEECCBTTTBCCEECCCEEEEEC
T ss_pred             CCChhhCE-EEEEEEecCCcceeeEECCCEEEEEe
Confidence            99999995 999999986311 2234556788886

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.13  E-value=2.5e-10  Score=77.25  Aligned_cols=82  Identities=26%  Similarity=0.380  Sum_probs=58.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--CeeeeeeeeccCCcEEEc-----cCCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSIIHSGGRYSIT-----TAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~~~~~~r~~v~-----~~G~L~I~~v~~~D~gg~   82 (114)
                      .+..|+...+.+|+++.|.|...+...+...+.|+|.  +..... ....++||.+.     .+..|.|++++.+|+| .
T Consensus         3 V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~-li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG-~   80 (126)
T 3moq_A            3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ-SISIGGRYVETVNKGSKSFSLRISDLRVEDSG-T   80 (126)
T ss_dssp             EEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE-ECCCBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             eEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceE-EEEeCCcEEEEEeCCCCEEEEEECcCChHhCE-E
Confidence            3556888999999999999998543211127899994  222100 12356899874     2346999999999995 9


Q ss_pred             eEEEEeeccCC
Q psy9140          83 YYCQTTHKLTG   93 (114)
Q Consensus        83 Y~C~a~n~l~~   93 (114)
                      |.|.+.|....
T Consensus        81 Y~C~~~~~~~~   91 (126)
T 3moq_A           81 YKCQAFYVFFA   91 (126)
T ss_dssp             EEEEEEEEEET
T ss_pred             EEEEEEEcCCC
Confidence            99999987543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.13  E-value=1.4e-11  Score=86.17  Aligned_cols=81  Identities=19%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~g   80 (114)
                      +.+.+.+....+.+|..+.|.|.+.++.++++.++|+||+..+...       ....+++|.+  .+.|.|.+++.+|+|
T Consensus       113 p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G  190 (213)
T 3d9a_L          113 PTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERHN  190 (213)
T ss_dssp             CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEE--EEEEEEEHHHHHHCC
T ss_pred             ceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEE--EEEEEEeccccCCCC
Confidence            3344444444456899999999996533222279999999865211       0123445543  358999999999995


Q ss_pred             eeeEEEEeecc
Q psy9140          81 IRYYCQTTHKL   91 (114)
Q Consensus        81 g~Y~C~a~n~l   91 (114)
                       .|+|.|.|..
T Consensus       191 -~Y~C~a~n~~  200 (213)
T 3d9a_L          191 -SYTCEATHKT  200 (213)
T ss_dssp             -EEEEEEECTT
T ss_pred             -EEEEEEEEcc
Confidence             9999999974

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.12  E-value=4.6e-11  Score=89.40  Aligned_cols=89  Identities=13%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             eccceeEEEeCCeEEEEeecCCC--CCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCC----cEEEeecCCCCCCeeeE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAY--NHNLL-LIAWLREGVSEARSIIHSGGRYSITTAG----ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~--~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G----~L~I~~v~~~D~gg~Y~   84 (114)
                      +.|++..|..|.+|.|.|.+.+.  +..+. .+.|.+|+..+      .++|+....+|    .|.|.+++.+|+ |.|+
T Consensus         5 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l------~~~~~~~~~~~~~~~~L~i~~~~~~d~-g~y~   77 (313)
T 2d9q_B            5 ISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQ------PGGRQQRLSDGTQESIITLPHLNHTQA-FLSC   77 (313)
T ss_dssp             EEESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBC------TTCEECCCSSSCCCEEEEESCCCSSEE-EEEE
T ss_pred             EECCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEEC------CccceEEEecCeEEEEEEEeccCCCcc-ceEE
Confidence            57889999999999999999764  21112 78999998853      23455444454    599999999999 5999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.+.+..+   ..+..+.|.|..++.
T Consensus        78 c~~~~~~~---~~~~~~~l~v~~~P~  100 (313)
T 2d9q_B           78 SLNWGNSL---QILDQVELRAGYPPA  100 (313)
T ss_dssp             EEESSSSE---EEEEEEEEEECCCCC
T ss_pred             eeecCCCc---eeEEEEEEccCCCCC
Confidence            99976422   345567777776543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.12  E-value=2.8e-10  Score=84.32  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee-------eeccCCcEEEccCCc---EEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS-------IIHSGGRYSITTAGA---LHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~-------~~~~~~r~~v~~~G~---L~I~~v~~~   77 (114)
                      +...|. ..+.+|++|.|.|.+.++..+...+.|+|.  +..+...       .....+||.+..++.   |.|.+++.+
T Consensus       143 v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  221 (280)
T 3fku_X          143 LTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPE  221 (280)
T ss_dssp             BBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGG
T ss_pred             EEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHH
Confidence            334444 889999999999999663211127899883  2221100       001257898875543   999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |+| .|.|.+.|..+.....+..++|.|...
T Consensus       222 DsG-~Y~C~~~~~~~~~~~~g~~t~l~V~~~  251 (280)
T 3fku_X          222 DEA-DYYCSTWDSSLSAVVFGGGTKLTVLGQ  251 (280)
T ss_dssp             GCS-EEEEEEEETTTTEEEEBCCCEEEEC--
T ss_pred             HCE-EEEEEEecCCCCceEECCCEEEEECCC
Confidence            995 999999997533445667889999643

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.12  E-value=3.1e-10  Score=83.00  Aligned_cols=93  Identities=23%  Similarity=0.404  Sum_probs=64.9

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee--eeee------------eccCCcEEEcc-----CCcE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE--ARSI------------IHSGGRYSITT-----AGAL   69 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~--~~~~------------~~~~~r~~v~~-----~G~L   69 (114)
                      ...|.+..+.+|+++.|.|.+.+.......+.|+|++  ..+  +...            ....+||.+..     .+.|
T Consensus       155 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L  234 (268)
T 1x9q_A          155 LDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYL  234 (268)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             EECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEE
Confidence            3456678899999999999996543211289999852  221  1000            02357998863     2579


Q ss_pred             EEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.+++.+|+| .|.|.|.|.  +...-...++|.|.
T Consensus       235 ~I~~v~~~DsG-~Y~C~a~~~--~~~~fg~Gt~L~V~  268 (268)
T 1x9q_A          235 QMNNLRVEDTG-IYYCTGASY--GMEYLGQGTSVTVS  268 (268)
T ss_dssp             EECSCCGGGCE-EEEEEEEET--TEEEECCCEEEEEC
T ss_pred             EECCCCHHHCE-EEEEEEccC--CccEECCCEEEEeC
Confidence            99999999995 999999984  34445668888773

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=99.12  E-value=2.1e-10  Score=75.05  Aligned_cols=94  Identities=15%  Similarity=0.236  Sum_probs=63.4

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee-------eccCCcEEEcc---CC--cEEEeec
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI-------IHSGGRYSITT---AG--ALHIRDT   74 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~-------~~~~~r~~v~~---~G--~L~I~~v   74 (114)
                      ..|....+.+|.+|.|.|...+...+...+.|.|..  ..   ++...       ...++||.+..   ++  .|.|+++
T Consensus         4 q~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (114)
T 1u9k_A            4 LEEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDL   83 (114)
T ss_dssp             -CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCccEEEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCC
Confidence            356778899999999999985321111178999953  21   21110       01148998853   22  6999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +.+|+| .|.|.+.+..+.........+|.|.
T Consensus        84 ~~~Dsg-~Y~C~~~~~~~~~~~~~~~i~L~V~  114 (114)
T 1u9k_A           84 QVTDSG-LYRCVIYHPPNDPVVLFHPVRLVVT  114 (114)
T ss_dssp             CGGGCE-EEEEEEECTTSCCEECSCCEEEEEC
T ss_pred             ChHHCE-EEEEEEecCCCCceeeeceEEEEEC
Confidence            999995 9999999875444445667788773

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=99.12  E-value=5.4e-10  Score=72.97  Aligned_cols=78  Identities=19%  Similarity=0.314  Sum_probs=54.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee----c----cCCcEEEccCC--cEEEeec
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII----H----SGGRYSITTAG--ALHIRDT   74 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~----~----~~~r~~v~~~G--~L~I~~v   74 (114)
                      .+..|....+.+|.+|.|.|.......+  .+.|+|..  .   .++....    .    .++||.+..++  .|.|+++
T Consensus         4 v~q~p~~~~v~~G~~vtL~C~~~~~~~~--~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~L~I~~~   81 (112)
T 1fo0_B            4 LEQNPRWRLVPRGQAVNLRCILKNSQYP--WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVA   81 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCC--EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCeEEEecCCcEEEEEEeCCCCCc--eEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCCeEEEcCC
Confidence            4556888899999999999998543222  78999853  2   1211100    0    13799875321  8999999


Q ss_pred             CCCCCCeeeEEEEeec
Q psy9140          75 GMEDSYIRYYCQTTHK   90 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~   90 (114)
                      +.+|+| .|.|.+.+.
T Consensus        82 ~~~Dsg-~Y~C~~~~~   96 (112)
T 1fo0_B           82 NMSQGR-TLYCTCSAD   96 (112)
T ss_dssp             SCCSCE-EEEEEEESS
T ss_pred             CHhHCE-EEEEEEEcC
Confidence            999995 999999874

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.11  E-value=2e-11  Score=85.53  Aligned_cols=81  Identities=20%  Similarity=0.324  Sum_probs=59.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      +.+.+.+.+..+.+|.++.|.|.+.++.++.+.++|+||+..+..      .....+++|.+.  ..|.|.+++.+|+| 
T Consensus       112 P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g-  188 (211)
T 3tv3_L          112 PSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWKSHR-  188 (211)
T ss_dssp             CEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEE--EEEEECHHHHHHSS-
T ss_pred             CeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEE--EEEEEcHHHhCCCC-
Confidence            446666666666689999999999764332238999999987521      012345667664  57999999999995 


Q ss_pred             eeEEEEeecc
Q psy9140          82 RYYCQTTHKL   91 (114)
Q Consensus        82 ~Y~C~a~n~l   91 (114)
                      .|+|.|.|..
T Consensus       189 ~Y~C~v~~~~  198 (211)
T 3tv3_L          189 SYSCQVTHEG  198 (211)
T ss_dssp             CEEEEEEETT
T ss_pred             eEEEEEEECC
Confidence            9999999974

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=99.11  E-value=2.1e-09  Score=72.74  Aligned_cols=98  Identities=21%  Similarity=0.319  Sum_probs=67.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee-----eccCCcEEEc--cCC---cEEEeec
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI-----IHSGGRYSIT--TAG---ALHIRDT   74 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~-----~~~~~r~~v~--~~G---~L~I~~v   74 (114)
                      .+..|....+.+|.+|.|.|........+ .+.|+|..  .   .++...     ....+||.+.  +++   .|.|+++
T Consensus        12 v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~   90 (134)
T 3bik_B           12 LTFYPAWLTVSEGANATFTCSLSNWSEDL-MLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT   90 (134)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCTTC-EEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSC
T ss_pred             EEECCCeEEEeCCCCEEEEEEeCCCCCCc-EEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCC
Confidence            44568888999999999999985432112 79999852  2   121111     1236899884  233   6999999


Q ss_pred             CCCCCCeeeEEEEeeccCCc-EEeCCCeEEEEeccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGE-RKISPPSQVMVSEIA  109 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~-~~~s~~a~L~V~~~~  109 (114)
                      +.+|+| .|.|.+.+.-.+. ...+..++|.|.+..
T Consensus        91 ~~~Dsg-~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~  125 (134)
T 3bik_B           91 RRNDSG-IYLCGAISLHPKAKIEESPGAELVVTERI  125 (134)
T ss_dssp             CGGGCE-EEEEEEEECSSSCEEEECCCEEEEEECCC
T ss_pred             ChHHCE-EEEEEEEeCCCCceEEEcCCEEEEEeCCC
Confidence            999995 9999998753222 234668999998654

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=99.10  E-value=6.7e-10  Score=72.69  Aligned_cols=93  Identities=17%  Similarity=0.260  Sum_probs=62.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee--------ccCCcEEEcc---C--CcEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII--------HSGGRYSITT---A--GALHIRD   73 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~--------~~~~r~~v~~---~--G~L~I~~   73 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .++....        .-.+||.+..   +  ..|.|++
T Consensus         5 ~q~~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (116)
T 1a2y_B            5 QESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNS   84 (116)
T ss_dssp             EEECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             EcCCCEEEeCCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            346667899999999999985432111279999853  1   1221100        1147998863   2  3699999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++.+|+| .|.|.+.+.. ....-...++|.|.
T Consensus        85 ~~~~Dsg-~Y~C~~~~~~-~~~~fg~GT~l~V~  115 (116)
T 1a2y_B           85 LHTDDTA-RYYCARERDY-RLDYWGQGTTLTVS  115 (116)
T ss_dssp             CCGGGCE-EEEEEEESSS-SEEEECCCEEEEEC
T ss_pred             CCHHHCE-EEEEEEecCC-CceEECCCEEEEEe
Confidence            9999995 9999999752 23344567788874

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=99.10  E-value=4.9e-10  Score=73.74  Aligned_cols=96  Identities=15%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee---------eccCCcEEEcc---C--CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI---------IHSGGRYSITT---A--GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~---------~~~~~r~~v~~---~--G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .++...         ....+||.+..   +  ..|.|+
T Consensus         5 ~qp~~~~~~~G~~v~L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (120)
T 1mfa_H            5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEeCCCCEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEEC
Confidence            457778899999999999985322111179999842  2   122111         01247998863   2  269999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +++.+|+| .|.|.+.+.......-...++|.|...
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~~~~~~fg~GT~l~V~~~  119 (120)
T 1mfa_H           85 SLTSEDSA-VYYCTRGGHGYYGDYWGQGASLTVSSA  119 (120)
T ss_dssp             SCCGGGCE-EEEEEEEETTEEEEEECCCEEEEEC--
T ss_pred             CCCHHHCE-EEEEEEecCCCceeEECCCEEEEEEcC
Confidence            99999995 999999975211234466888988754

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.09  E-value=2.4e-11  Score=86.79  Aligned_cols=82  Identities=12%  Similarity=0.168  Sum_probs=58.6

Q ss_pred             cceeeccceeE--EEeCCeEEEEeecCCCC--CCcceEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCC
Q psy9140           8 SDYEINTGNTF--VLRGNIAVLQCNIPAYN--HNLLLIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMED   78 (114)
Q Consensus         8 ~~~~v~~~d~~--v~~G~~AvL~C~~~~~~--~~~~~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D   78 (114)
                      +.+.++|....  +.+|++|.|.|.+.++.  .+.+.|+|+|++..+...     ....+++|..  ++.|.|.+++.+|
T Consensus        10 p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D   87 (218)
T 2rgs_A           10 PSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRV--VSTLPIQHQDWMS   87 (218)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEE--EEEEECCHHHHHT
T ss_pred             CEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEE--EEEEEEcHHHcCC
Confidence            34555565555  88999999999997652  121289999999764210     1123456655  3689999999999


Q ss_pred             CCeeeEEEEeeccC
Q psy9140          79 SYIRYYCQTTHKLT   92 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~   92 (114)
                      +| .|+|.|.|...
T Consensus        88 ~g-~Y~C~~~~~~~  100 (218)
T 2rgs_A           88 GK-EFKCKVNNKDL  100 (218)
T ss_dssp             TC-CEEEEEEETTC
T ss_pred             CC-eEEEEEECCcC
Confidence            95 99999999754

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.09  E-value=2.2e-10  Score=94.76  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEE-Ee--eCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIA-WL--REGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vs-W~--kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg   81 (114)
                      +.|. .+++..|.+|.+|.|.|.+.+.+.+  .+. |+  +|+..+.     .+.+..+..   ++.|.|.+++.+|+| 
T Consensus       166 p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p--~i~~W~~~~~g~~l~-----~~~~~~~~~~~~~~~l~I~~~~~~d~g-  236 (731)
T 2v5y_A          166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVA--GDRLWLQGIDVRDAP-----LKEIKVTSSRRFIASFNVVNTTKRDAG-  236 (731)
T ss_dssp             CEEC-CCCCEEEETTSCEEEEEEEESCCCT--TCEEEEEESSSCCEE-----EEEEEECCSSEEEEEEEECSCCTTTCE-
T ss_pred             cccc-cccceEEeCCCcEEEEEEeCCCCCC--ceeEEEecCCCcccc-----ccceEEeccccceEEEEEcccccccCe-
Confidence            3344 7889999999999999999776555  455 88  6776542     111111211   379999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      .|+|.|.|..+.  ..+..+.|.|..++..
T Consensus       237 ~Y~c~A~n~~G~--~~s~~~~l~V~~~P~~  264 (731)
T 2v5y_A          237 KYRCMIRTEGGV--GISNYAELVVKEPPVP  264 (731)
T ss_dssp             EEEEEEEETTEE--EECCCEEEEEECCCCB
T ss_pred             EEEEEEECCCCC--cceeeEEEEEecCCCC
Confidence            999999998763  2577889999987764

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.09  E-value=4.7e-10  Score=77.36  Aligned_cols=92  Identities=18%  Similarity=0.236  Sum_probs=64.9

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee----eccCCcEEEcc---CCcEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI----IHSGGRYSITT---AGALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~---~G~L~I~~v~~~D   78 (114)
                      +..|....+.+|.+|.|.|.+......  .+.|+|..  .   .+++..    ....+||.+..   +..|.|++++.+|
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~~~--~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~D   81 (143)
T 3u6r_L            4 TQSPATLSLSPGERATLSCRASQSVNK--YLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPED   81 (143)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             EECCCEEEEeCCCCEEEEEEECCCCce--eeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccC
Confidence            446778899999999999998654322  78999853  2   222110    01257998853   3369999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +| .|.|.+.+..   ......++|.|+.+
T Consensus        82 sG-~Y~C~~~~~~---~~fg~gt~L~V~~~  107 (143)
T 3u6r_L           82 FA-VYYCQQRSDW---VTFGGGTKVEIKAA  107 (143)
T ss_dssp             CE-EEEEEECSSB---CEECCCEEEEEC--
T ss_pred             CE-EEEEEEecCC---CEECCCEEEEECCC
Confidence            95 9999999863   24566889999753

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=99.09  E-value=6.6e-10  Score=74.37  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCC--e---eeeeeeec--------cCCcEEEc--cC---CcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREG--V---SEARSIIH--------SGGRYSIT--TA---GALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~--~---~~~~~~~~--------~~~r~~v~--~~---G~L~I   71 (114)
                      ..+|....+.+|.+|.|.|...+...... .+.|+|..  .   .|+.....        ..+||.+.  ++   ..|.|
T Consensus         4 ~~qp~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I   83 (126)
T 2h32_A            4 LHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSI   83 (126)
T ss_dssp             EECCSEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEE
T ss_pred             eECCCCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEE
Confidence            34567788999999999999854311112 79999853  1   22221110        14699886  22   36999


Q ss_pred             eecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ++++.+|+| .|.|.+.+....   .+...+|.|.+
T Consensus        84 ~~~~~~DsG-~Y~C~~~~~~~~---~~~~t~l~v~~  115 (126)
T 2h32_A           84 SELQPEDEA-MYYCAMGARSSE---KEEREREWEEE  115 (126)
T ss_dssp             CSCCGGGCE-EEEEEEECSCCC---CCCTTCC----
T ss_pred             CCCChhHCE-EEEEEEEcCCCC---cceeEEEeecc
Confidence            999999995 999999986543   35677888864

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.09  E-value=9e-10  Score=79.24  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee--------eccCCcEEEccC-C----cEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI--------IHSGGRYSITTA-G----ALHI   71 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~--------~~~~~r~~v~~~-G----~L~I   71 (114)
                      ....|++..+.+|.+|.|.|.+.+...+...+.|+|..  .   .+++..        ....+||.+..+ +    .|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            44568888999999999999986531111279999853  2   121110        013689988632 2    7999


Q ss_pred             eecCCCCCCeeeEEEEeecc-CCcEEeCCCeEEEEe
Q psy9140          72 RDTGMEDSYIRYYCQTTHKL-TGERKISPPSQVMVS  106 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l-~~~~~~s~~a~L~V~  106 (114)
                      ++++.+|+| .|.|.+.|.- ......+..++|.|.
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~L~V~  118 (230)
T 1ypz_F           84 YSLEEEDEA-IYYCSYGEGSSGFHKVFAEGTKLIVI  118 (230)
T ss_dssp             CSCCGGGCS-EEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred             CcCChhhCE-EEEEEEECCCCCcccccCCCEEEEEe
Confidence            999999995 9999999841 011123456789987

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.09  E-value=2.2e-11  Score=86.24  Aligned_cols=80  Identities=8%  Similarity=0.098  Sum_probs=56.7

Q ss_pred             eeccceeE-EEeCCeEEEEeecCCCC-CCcc-eEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140          11 EINTGNTF-VLRGNIAVLQCNIPAYN-HNLL-LIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        11 ~v~~~d~~-v~~G~~AvL~C~~~~~~-~~~~-~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      ...|.... +.+|++|.|.|.+.++. .+.. .++|+|++..+...     ....+++|..  ++.|.|.+++.+|+| .
T Consensus         6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G-~   82 (207)
T 2vol_A            6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRS--VSELPIMHQDWLNGK-E   82 (207)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEE--EEEEECCHHHHHTTC-C
T ss_pred             EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEE--EEEEEEehhHcCCCC-E
Confidence            34455455 88999999999996653 1222 89999999764210     0123456644  368999999999995 9


Q ss_pred             eEEEEeeccCC
Q psy9140          83 YYCQTTHKLTG   93 (114)
Q Consensus        83 Y~C~a~n~l~~   93 (114)
                      |+|.|.|..+.
T Consensus        83 Y~C~a~~~~~~   93 (207)
T 2vol_A           83 FKCRVNSAAFP   93 (207)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEccCCC
Confidence            99999997653

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.09  E-value=3.5e-10  Score=89.23  Aligned_cols=82  Identities=21%  Similarity=0.349  Sum_probs=60.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      +.+.+.|.+..+.+|+.+.|.|.+.+++.++..++|+||+..+...      ....+++|.+.  ..|.|.+++.+|+| 
T Consensus       115 P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~G-  191 (523)
T 2rcj_C          115 PTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAAS--SYLSLTPEQWKSHR-  191 (523)
T ss_pred             CeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEE--EEEEEechhcCCCc-
Confidence            4467788888889999999999998765432389999999864210      01123344332  46999999999995 


Q ss_pred             eeEEEEeeccC
Q psy9140          82 RYYCQTTHKLT   92 (114)
Q Consensus        82 ~Y~C~a~n~l~   92 (114)
                      .|+|.|.|..+
T Consensus       192 ~Y~C~a~n~~~  202 (523)
T 2rcj_C          192 SYSCQVTHEGS  202 (523)
T ss_pred             eEEEEEEecCc
Confidence            99999999854

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=99.09  E-value=1.6e-09  Score=71.58  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=62.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeeee---------ccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSII---------HSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~~---------~~~~r~~v~~~-----G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|...     .++....         ...+||.+..+     ..|.|+
T Consensus         5 ~qp~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (123)
T 2wzp_D            5 QESGGGLVQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMN   84 (123)
T ss_dssp             EEEECEEEETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEEC
T ss_pred             ECCCCEEEcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEEC
Confidence            4577789999999999999854221112799998642     1221100         12479988632     379999


Q ss_pred             ecCCCCCCeeeEEEEeecc-----CCcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKL-----TGERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l-----~~~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.+..     +....-...++|.|.
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~~~~~~~~~~~fg~GT~l~V~  122 (123)
T 2wzp_D           85 SLKPEDTA-IYYCAARSGGFSSNRELYDGWGQGTQVTVS  122 (123)
T ss_dssp             SCCGGGCE-EEEEEEEESSBCSCGGGCSEECCCEEEEEE
T ss_pred             CCCHHHCE-EEEEEEecCcccccccccceECCCEEEEEc
Confidence            99999995 9999999852     122234557777775

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.09  E-value=3.4e-11  Score=86.70  Aligned_cols=81  Identities=19%  Similarity=0.313  Sum_probs=55.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~g   80 (114)
                      +.+.+.+....+.+|.++.|.|.+.++.++.+.++|+||+..+...       ....+++|.+.  +.|.|.+++.+|+|
T Consensus       155 P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~--~~L~i~~~~~~d~G  232 (254)
T 2c1o_A          155 PTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERHN  232 (254)
T ss_dssp             CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCC
T ss_pred             CeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEE--EEEEeccccccCCC
Confidence            3445544444455799999999996643222269999999865211       01224556543  58999999999995


Q ss_pred             eeeEEEEeecc
Q psy9140          81 IRYYCQTTHKL   91 (114)
Q Consensus        81 g~Y~C~a~n~l   91 (114)
                       .|+|.|.|..
T Consensus       233 -~Y~C~a~n~~  242 (254)
T 2c1o_A          233 -SYTCEATHKT  242 (254)
T ss_dssp             -EEEEEEECTT
T ss_pred             -eEEEEEEcCC
Confidence             9999999974

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=99.08  E-value=7.6e-10  Score=73.85  Aligned_cols=99  Identities=20%  Similarity=0.287  Sum_probs=66.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee---------ccCCcEEEcc---C--CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII---------HSGGRYSITT---A--GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~---------~~~~r~~v~~---~--G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .++....         ...+||.+..   +  -.|.|+
T Consensus         5 ~q~~~~~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (127)
T 1mqk_H            5 QESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMS   84 (127)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCCccCCcEEEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEEEEEC
Confidence            456678899999999999984321111178999853  1   1211100         1247998863   2  269999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +++.+|+| .|.|.+.+.......-...++|.|.+.+..
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~~~~~~fg~gT~L~V~~~~~~  122 (127)
T 1mqk_H           85 SLKSEDTA-MYYCVRHEYYYAMDYWGQGTTVTVSSAWRH  122 (127)
T ss_dssp             SCCGGGCE-EEEEEEEETTTEEEEECCCEEEEECSSCCC
T ss_pred             CCCHHHCE-EEEEEEecCCcCcceECCCEEEEEeCCccc
Confidence            99999995 999999875212334466889999987654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.08  E-value=1.7e-10  Score=81.85  Aligned_cols=97  Identities=8%  Similarity=-0.032  Sum_probs=62.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccC----CcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSG----GRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~----~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      ..+.+. ..+.+|..+.|.|.+.+...... .++|+||+..+.......+    ..+..  +..|.|..+..+|. |.|+
T Consensus        95 ~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~d~~-g~yt  170 (202)
T 1vca_A           95 PEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETK--SLEVTFTPVIEDIG-KVLV  170 (202)
T ss_dssp             CEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEE--EEEEEECCCGGGTT-CEEE
T ss_pred             CEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEE--EEEEEEEeeeccCC-CeEE
Confidence            345554 67999999999999965422222 7899999986522111111    01211  24578888887776 5999


Q ss_pred             EEEeeccCCcE----EeCCCeEEEEecccc
Q psy9140          85 CQTTHKLTGER----KISPPSQVMVSEIAL  110 (114)
Q Consensus        85 C~a~n~l~~~~----~~s~~a~L~V~~~~~  110 (114)
                      |.|.|.+++..    ..+....|.|..|+.
T Consensus       171 C~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          171 CRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            99999987521    123367888887764

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.08  E-value=5.6e-11  Score=83.65  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=53.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      +.+.+....+++|+++.|.|.+.++.++++.++|+||+..+...       ....++.|.+.  ..|.|..++.+|+| .
T Consensus       117 v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g-~  193 (216)
T 2xzc_L          117 VFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEKHK-V  193 (216)
T ss_dssp             EEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTTCC-E
T ss_pred             eEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEE--EEEEECHHHhCCCC-c
Confidence            34433333345799999999997643222279999999865211       01123445443  47999999999995 9


Q ss_pred             eEEEEeecc
Q psy9140          83 YYCQTTHKL   91 (114)
Q Consensus        83 Y~C~a~n~l   91 (114)
                      |+|.|.|..
T Consensus       194 Y~C~a~n~~  202 (216)
T 2xzc_L          194 YACEVTHQG  202 (216)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEcCC
Confidence            999999974

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.08  E-value=1.4e-10  Score=86.12  Aligned_cols=89  Identities=17%  Similarity=0.143  Sum_probs=61.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc----cCCcEEEeecCCCCCCeeeEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT----TAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~----~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      +.+.|. ..|.+|+++.|+|.+.+.  + ..+.|+||+..+.     .+.++...    .+++|.|.+|+  |+ |.|+|
T Consensus       110 l~~~p~-~~V~~G~~vtL~C~~~~~--~-~~~~w~k~g~~~~-----~~~~~~~~~~~~~~~~l~I~~v~--D~-G~Y~C  177 (257)
T 1b6u_A          110 LSAQPG-PTVLAGESVTLSCSSRSS--Y-DMYHLSREGEAHE-----RRFSAGPKVNGTFQADFPLGPAT--HG-GTYRC  177 (257)
T ss_dssp             EECSSC-TTCBTTCEEEEEEECSSC--C-SEEEEEETTSSCE-----ECCBCBCCSSSCCBEEEEEEECC--SC-EEEEE
T ss_pred             eEccCC-CccCCCCEEEEEEeCCCC--C-cEEEEEECCcccC-----cccccccccCCceeEEEEecccc--cC-EEEEE
Confidence            444553 468899999999998653  2 2789999998642     12222222    26789999999  98 59999


Q ss_pred             EEeeccCC--cEEeCCCeEEEEecccc
Q psy9140          86 QTTHKLTG--ERKISPPSQVMVSEIAL  110 (114)
Q Consensus        86 ~a~n~l~~--~~~~s~~a~L~V~~~~~  110 (114)
                      .|.|....  -...|.+..|.|+.++.
T Consensus       178 ~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          178 FGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             EEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             EEEcCCCCcccccCCCCEEEEEeccCC
Confidence            99975221  11356788999987643

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.08  E-value=3.4e-10  Score=84.15  Aligned_cols=90  Identities=12%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCC-----CCCcceEEEeeCCeeeeeeeeccCCcEEEccC--CcEEEeecCCCCCCeee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAY-----NHNLLLIAWLREGVSEARSIIHSGGRYSITTA--GALHIRDTGMEDSYIRY   83 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~-----~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~--G~L~I~~v~~~D~gg~Y   83 (114)
                      .+.|+|..+.+|.+|.|.|.+.+.     ..+.+.|.|.||+..|      ..+||.+...  +.|.|.+++.+|  |.|
T Consensus         8 ~i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i------~~~~~~~~~~~~~~L~i~~~~~~~--g~Y   79 (303)
T 1i1r_A            8 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI------PKEQYTIINRTASSVTFTDIASLN--IQL   79 (303)
T ss_dssp             EEESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEEC------CGGGCEEEETTEEEEEECSCCCSE--EEE
T ss_pred             eEccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEEC------ChhheeeeCCcEEEEEEcCcCCCc--eEE
Confidence            478999999999999999999642     0121289999999853      2347766532  479999999985  499


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|.|.|. +........+.|.+..++
T Consensus        80 ~C~a~~~-g~~~~~~~~~~l~v~~~P  104 (303)
T 1i1r_A           80 TCNILTF-GQLEQNVYGITIISGLPP  104 (303)
T ss_dssp             EEEEEET-TTEEEEEEEEEEEEECCC
T ss_pred             EEecccC-CCcceEEEEEEEeccCCC
Confidence            9999884 221111224555565443

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=99.07  E-value=1e-09  Score=72.11  Aligned_cols=94  Identities=17%  Similarity=0.273  Sum_probs=62.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee---------eccCCcEEEcc---C--CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI---------IHSGGRYSITT---A--GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~---------~~~~~r~~v~~---~--G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|...     .++...         ....+||.+..   +  ..|.|+
T Consensus         5 ~qp~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (120)
T 1n4x_H            5 QQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQIN   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            4567788999999999999853211111789998541     121111         01247998862   2  269999


Q ss_pred             ecCCCCCCeeeEEEEeecc--CCcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKL--TGERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l--~~~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.+..  .....-...++|.|+
T Consensus        85 ~~~~~DsG-~Y~C~~~~~~~~~~~~~fg~GT~l~V~  119 (120)
T 1n4x_H           85 NLKNEDTA-TYFCVRDRHDYGEIFTYWGQGTTVTVS  119 (120)
T ss_dssp             SCCGGGCE-EEEEEEESSSSSSCEEEECCCEEEEEC
T ss_pred             CCCHHHCE-EEEEEEEccccccccceECCCEEEEEe
Confidence            99999995 9999999751  123334557777774

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.07  E-value=1.9e-10  Score=86.84  Aligned_cols=71  Identities=17%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee---------eccCCcEEEcc------CCcEEEeecCCCCCCe
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI---------IHSGGRYSITT------AGALHIRDTGMEDSYI   81 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~---------~~~~~r~~v~~------~G~L~I~~v~~~D~gg   81 (114)
                      ..+.+|+++.|.|.+.+.+.+  .+.|+|++..++...         ....+||.+..      ++.|.|.+++.+|+| 
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G-   80 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSI--QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD-   80 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSC--CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCE-
T ss_pred             EEEeCCCeEEEEEEecCCCce--EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCE-
Confidence            468899999999998754333  899999987532110         12357887753      567999999999995 


Q ss_pred             eeEEEEeec
Q psy9140          82 RYYCQTTHK   90 (114)
Q Consensus        82 ~Y~C~a~n~   90 (114)
                      .|+|.|.|.
T Consensus        81 ~Y~C~~~n~   89 (363)
T 1wio_A           81 TYICEVEDQ   89 (363)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEEEEC
Confidence            999999996

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=99.07  E-value=8.9e-10  Score=72.60  Aligned_cols=95  Identities=21%  Similarity=0.299  Sum_probs=62.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEcc-----CCcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITT-----AGALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~-----~G~L~I   71 (114)
                      ..+|....+.+|.+|.|.|...+.......+.|+|..  ..   ++...         ....+||.+..     +..|.|
T Consensus         4 v~qp~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (121)
T 1j05_H            4 LQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQL   83 (121)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEE
T ss_pred             EECCCCEEEeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEE
Confidence            3457778899999999999985422111279998853  21   11110         01246998852     237999


Q ss_pred             eecCCCCCCeeeEEEEeecc---CCcEEeCCCeEEEEe
Q psy9140          72 RDTGMEDSYIRYYCQTTHKL---TGERKISPPSQVMVS  106 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l---~~~~~~s~~a~L~V~  106 (114)
                      ++++.+|+| .|.|.+.+..   +....-...++|.|.
T Consensus        84 ~~~~~~Dsg-~Y~C~~~~~~~~~~~~~~fg~GT~l~V~  120 (121)
T 1j05_H           84 TSLTSEDTA-VYYCAPFGYYVSDYAMAYWGQGTSVTVS  120 (121)
T ss_dssp             CSCCGGGCE-EEEEEEEBTTTBCSSCCCCCCCEEEEEC
T ss_pred             CCCCHHHCE-EEEEEEEcCCCCccccceECCCEEEEec
Confidence            999999995 9999999862   112223447777774

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.07  E-value=4.6e-10  Score=83.22  Aligned_cols=91  Identities=20%  Similarity=0.207  Sum_probs=61.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +...|... +.+|.++.|.|.+.+.   +..+.|.|++..+...  ....+... ..++.|.|.+|+.+|+| .|+|.|.
T Consensus       122 ~~~~~~~~-v~~G~~v~L~C~~~~~---~~~~~w~k~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~  194 (316)
T 3vh8_G          122 LLAHPGPL-VKSGERVILQCWSDIM---FEHFFLHKEGISKDPS--RLVGQIHDGVSKANFSIGPMMLALAG-TYRCYGS  194 (316)
T ss_dssp             EEEESCSE-EETTCCEEEEEEESSC---CSEEEEEETTCCSCCE--EEECEEETTEEEEEEEECSCCGGGCE-EEEEEEE
T ss_pred             EEecCCCc-cCCCCeEEEEEcCCCC---CcEEEEEECCCccccc--eeeeeecCCCceEEEEECCCChhhCc-eEEEEEe
Confidence            44555444 8999999999999532   1278999999864211  11111111 23578999999999995 9999999


Q ss_pred             eccCCc--EEeCCCeEEEEec
Q psy9140          89 HKLTGE--RKISPPSQVMVSE  107 (114)
Q Consensus        89 n~l~~~--~~~s~~a~L~V~~  107 (114)
                      |..+..  ...|....|.|.+
T Consensus       195 n~~g~~~~s~~s~~~~l~V~~  215 (316)
T 3vh8_G          195 VTHTPYQLSAPSDPLDIVVTG  215 (316)
T ss_dssp             CTTCTTBCCCCCCCEEEEEEC
T ss_pred             cCCCCccccCCCCCEEEEecC
Confidence            987531  1225577788864

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=99.07  E-value=1.2e-09  Score=72.60  Aligned_cols=93  Identities=26%  Similarity=0.337  Sum_probs=62.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee---------eccCCcEEEcc-----CCcEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI---------IHSGGRYSITT-----AGALH   70 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~---------~~~~~r~~v~~-----~G~L~   70 (114)
                      ...+|....+.+|.+|.|.|...+.......+.|+|..  .   .++...         ....+||.+..     +..|.
T Consensus         5 ~v~qp~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (121)
T 2xt1_B            5 QLVESGGGLVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQ   84 (121)
T ss_dssp             EEEEECCEEEETTCCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEEcCCCEEEeCCCCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEE
Confidence            34567788999999999999985422111179999943  2   122111         01247998853     23799


Q ss_pred             EeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |++++.+|+| .|.|.+. .+    .-...++|.|+..
T Consensus        85 I~~v~~~DsG-~Y~C~~~-~~----~fg~Gt~l~v~~~  116 (121)
T 2xt1_B           85 MNDLKPEDTA-MYYCKAS-GS----SWGQGTQVTVSSH  116 (121)
T ss_dssp             ECSCCGGGCE-EEEEEET-TC----CCCCCEEEEEEC-
T ss_pred             ECCCCHHHCE-EEEEEEE-eC----EECCCEEEEEecc
Confidence            9999999995 9999997 22    1355778888754

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.07  E-value=7.5e-10  Score=79.77  Aligned_cols=96  Identities=17%  Similarity=0.198  Sum_probs=63.5

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee--------eccCCcEEEcc---CC--cEEEe
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI--------IHSGGRYSITT---AG--ALHIR   72 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~--------~~~~~r~~v~~---~G--~L~I~   72 (114)
                      ..+|....+.+|.+|.|.|.+.+.......+.|+|.+  ..   +++..        ....+||.+..   ++  .|.|+
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (232)
T 1dn0_B            4 LQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLS   83 (232)
T ss_dssp             EEEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEEC
Confidence            3467778999999999999986542111279999853  21   11100        01257998863   22  79999


Q ss_pred             ecCCCCCCeeeEEEEeeccC--C-cEEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLT--G-ERKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~--~-~~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|.|.+.+.-+  . ....+..++|.|..
T Consensus        84 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  120 (232)
T 1dn0_B           84 SVTAADTA-VYYCARPPHDTSGHYWNYWGQGTLVTVSS  120 (232)
T ss_dssp             SCCGGGCE-EEEEEECSSTTSCSCCSEECCCEEEEECS
T ss_pred             CCCcccCE-EEEEEEecCCcCCchhhhcccceEEEEcc
Confidence            99999995 99999994211  1 11234567888875

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.07  E-value=9.5e-10  Score=81.45  Aligned_cols=96  Identities=20%  Similarity=0.323  Sum_probs=65.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee---------eccCCcEEEcc-----CCcEEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI---------IHSGGRYSITT-----AGALHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~---------~~~~~r~~v~~-----~G~L~I   71 (114)
                      ..+|+...+.+|.+|.|.|.+.++......+.|+|.+  ..+   ++..         ....+||.+..     +..|.|
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (257)
T 3bn9_D            4 LVQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQM   83 (257)
T ss_dssp             EEEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EEccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEE
Confidence            3567788899999999999986542111279999864  111   1100         01257998864     247999


Q ss_pred             eecCCCCCCeeeEEEEeeccC----------CcEEeCCCeEEEEec
Q psy9140          72 RDTGMEDSYIRYYCQTTHKLT----------GERKISPPSQVMVSE  107 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l~----------~~~~~s~~a~L~V~~  107 (114)
                      ++|+.+|+| .|.|.+.|..+          .....+..+.|.|..
T Consensus        84 ~~v~~~DsG-~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~  128 (257)
T 3bn9_D           84 SSLRAEDTA-VYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSS  128 (257)
T ss_dssp             ESCCGGGCE-EEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECS
T ss_pred             CCCChhhCE-EEEEEEecCCCcccccccccceeeeeCCcEEEEecC
Confidence            999999995 99999998653          111344567899975

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=99.07  E-value=1.3e-09  Score=71.09  Aligned_cols=93  Identities=22%  Similarity=0.340  Sum_probs=62.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeeee---------ccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSII---------HSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~~---------~~~~r~~v~~~-----G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  ..   ++....         ...+||.+..+     ..|.|+
T Consensus         5 ~qp~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (117)
T 2yc1_A            5 VESGGGLVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMN   84 (117)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCEEEcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEEC
Confidence            457778899999999999985321111178999853  21   111110         12479988632     279999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.+.. ....-...++|.|.
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~-~~~~fg~GT~l~V~  116 (117)
T 2yc1_A           85 SLRAEDTA-VYYCARGGVG-SFDTWGQGTMVTVS  116 (117)
T ss_dssp             SCCGGGCE-EEEEEEEETT-EEEEECCCEEEEEC
T ss_pred             CCCHHHCE-EEEEEEEeCC-CceEECCCEEEEEc
Confidence            99999995 9999999751 22334567788774

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=99.06  E-value=1.1e-09  Score=71.52  Aligned_cols=91  Identities=18%  Similarity=0.239  Sum_probs=59.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee------ec--cCCcEEEccC---CcEEEeecCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI------IH--SGGRYSITTA---GALHIRDTGM   76 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~------~~--~~~r~~v~~~---G~L~I~~v~~   76 (114)
                      +|....+.+|.+|.|.|...+.. +...+.|+|..  .   .++...      ..  -.+||.+..+   ..|.|++++.
T Consensus         7 qp~~~~~~~G~~v~L~C~~~~~~-~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~   85 (115)
T 2otu_A            7 QSSSASFSLGASAKLTCTLSSQH-STYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQP   85 (115)
T ss_dssp             ECCCEECCTTCCEEEEEEECGGG-TTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCCEEECCCCCEEEEEEecCCC-CCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCCh
Confidence            37788899999999999985431 11178999842  1   222110      01  1469988642   3699999999


Q ss_pred             CCCCeeeEEEEeeccCC--cEEeCCCeEEEE
Q psy9140          77 EDSYIRYYCQTTHKLTG--ERKISPPSQVMV  105 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V  105 (114)
                      +|+| .|.|.+.+...+  ...-...++|.|
T Consensus        86 ~Dsg-~Y~C~~~~~~~~~~~~~fg~GT~l~V  115 (115)
T 2otu_A           86 EDEA-IYICGVGDTIKEQFVYVFGGGTKVTV  115 (115)
T ss_dssp             GGCE-EEEEEEEECCTTSCEEEECCCEEEEC
T ss_pred             hHCE-EEEEEEecCCCCcceeEECCCEEecC
Confidence            9995 999999975321  123344555543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.06  E-value=1e-10  Score=81.90  Aligned_cols=81  Identities=20%  Similarity=0.336  Sum_probs=54.4

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      +.+.+.+.+..+.+|..+.|.|.+.++.++++.++|+||+..+...      ....++.|.+.  ..|.|..++.+|+| 
T Consensus       116 P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g-  192 (212)
T 1q0x_L          116 PTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMAS--SYLTLTARAWERHS-  192 (212)
T ss_dssp             CEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEEEEHHHHTTCC-
T ss_pred             CeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEE--EEEEEcHHHccCCC-
Confidence            3344544444556799999999997644332379999999865210      01122333332  46999999999995 


Q ss_pred             eeEEEEeecc
Q psy9140          82 RYYCQTTHKL   91 (114)
Q Consensus        82 ~Y~C~a~n~l   91 (114)
                      .|+|.|.|..
T Consensus       193 ~Y~C~a~n~~  202 (212)
T 1q0x_L          193 SYSCQVTHEG  202 (212)
T ss_dssp             EEEEEEEETT
T ss_pred             cEEEEEEeCC
Confidence            9999999963

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=99.06  E-value=1.7e-09  Score=71.36  Aligned_cols=94  Identities=20%  Similarity=0.314  Sum_probs=62.4

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee--------ccCCcEEEccC-----CcEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII--------HSGGRYSITTA-----GALHIRD   73 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~--------~~~~r~~v~~~-----G~L~I~~   73 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .++....        ...+||.+..+     ..|.|++
T Consensus         5 ~q~~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (121)
T 1kxv_C            5 VESGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDS   84 (121)
T ss_dssp             EEECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECS
T ss_pred             EcCCCEEEcCCCcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            456678899999999999985432111279999863  1   1221110        12479988632     2699999


Q ss_pred             cCCCCCCeeeEEEEeecc----CCcEEeCCCeEEEEe
Q psy9140          74 TGMEDSYIRYYCQTTHKL----TGERKISPPSQVMVS  106 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l----~~~~~~s~~a~L~V~  106 (114)
                      ++.+|+| .|.|.+.+..    .....-...++|.|+
T Consensus        85 ~~~~Dsg-~Y~C~~~~~~~~~~~~~~~fg~GT~L~V~  120 (121)
T 1kxv_C           85 LKPDDTA-MYYCKPSLRYGLPGCPIIPWGQGTQVTVS  120 (121)
T ss_dssp             CCGGGCE-EEEEEEEESSCCTTCCCCCCCCCEEEEEC
T ss_pred             CCHHHCE-EEEEEEEecCCccccccceECCCEEEEec
Confidence            9999995 9999999852    122233457788774

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=99.05  E-value=2e-09  Score=71.11  Aligned_cols=94  Identities=23%  Similarity=0.373  Sum_probs=61.9

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee---------ccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII---------HSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~---------~~~~r~~v~~~-----G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .++....         ...+||.+..+     ..|.|+
T Consensus         7 ~q~~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (123)
T 2p45_B            7 VESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMD   86 (123)
T ss_dssp             EEECCEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEES
T ss_pred             EccCCEEEeCCCCEEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEEC
Confidence            456678899999999999985422111279999853  2   1221110         12479998632     269999


Q ss_pred             ecCCCCCCeeeEEEEeecc---CCcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKL---TGERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l---~~~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.+..   +....-...++|.|.
T Consensus        87 ~~~~~Dsg-~Y~C~~~~~~~~~~~~~~fg~GT~l~V~  122 (123)
T 2p45_B           87 SLKPEDTA-TYYCAAGGYELRDRTYGQWGQGTQVTVS  122 (123)
T ss_dssp             SCCGGGCE-EEEEEESSCTTCGGGCCEECCCEEEEEE
T ss_pred             CCCHHHCE-EEEEEEEecCCCccccceeCCCEEEEec
Confidence            99999995 9999998741   122234557788775

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.05  E-value=5.7e-10  Score=84.22  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=62.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +...+....+.+|.+|.|.|.+.+...+ ..|.|++++..+   . ....|+.. .+|+|.|.+|+.+|+| .|+|.+  
T Consensus         9 ~~~p~~~v~~~~G~~v~l~C~~~~~~~~-~~i~W~~~~~~~---~-~~~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~~--   79 (325)
T 1n26_A            9 QEVARGVLTSLPGDSVTLTCPGVEPEDN-ATVHWVLRKPAA---G-SHPSRWAG-MGRRLLLRSVQLHDSG-NYSCYR--   79 (325)
T ss_dssp             CCCCTTEEEECTTCCEEEECTTSCTTCC-SEEEEEEECSSS---S-CCCEEEEE-ESSEEEECSCCGGGCE-EEEEES--
T ss_pred             cccCCCcEECCCCCcEEEEeCCCCCCCC-ceEEEEECCccC---C-cccccccc-ccceEEecccchhhCe-EeEEEe--
Confidence            4444444555799999999998653211 289999988753   1 12345654 4799999999999995 999993  


Q ss_pred             ccCCcEEeCCCeEEEEecccc
Q psy9140          90 KLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~~~  110 (114)
                       . +.  .+..+.|.|.+|+.
T Consensus        80 -~-g~--~~~~~~L~V~~pP~   96 (325)
T 1n26_A           80 -A-GR--PAGTVHLLVDVPPE   96 (325)
T ss_dssp             -S-SS--CSCEEEEEECCCCC
T ss_pred             -C-CE--EeeeEEEEeccCCC
Confidence             2 32  56679999987654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.05  E-value=3.1e-10  Score=77.60  Aligned_cols=81  Identities=12%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      ....|.+|+++.|.|.+.+.+.+...+.|+|++..+     ..+.++.  .+..|.|.  +.+|+ |.|+|.|.|.    
T Consensus         6 ~~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l-----~~~~~~~--~~~~l~i~--~~~d~-G~Y~C~~~n~----   71 (184)
T 3b5h_A            6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVL-----KEDALPG--QKTEFKVD--SDDQW-GEYSCVFLPE----   71 (184)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEE-----ECTTCCC--SEEEEEEC--GGGCC-EEEEEEEEST----
T ss_pred             EEEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEe-----ecccccC--CcEEEEEe--chhhC-eEEEEEEECC----
Confidence            456789999999999986654432289999999864     2222221  13467777  68999 5999999983    


Q ss_pred             EEeCCCeEEEEeccccc
Q psy9140          95 RKISPPSQVMVSEIALP  111 (114)
Q Consensus        95 ~~~s~~a~L~V~~~~~~  111 (114)
                        .+..+.|.|..++.+
T Consensus        72 --~~~~~~l~V~~~P~~   86 (184)
T 3b5h_A           72 --PMGTANIQLHGPPRV   86 (184)
T ss_dssp             --TSCEEEEEECCSCCC
T ss_pred             --cCcEEEEEEecCCce
Confidence              245678888876655

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=99.05  E-value=9.3e-10  Score=72.28  Aligned_cols=94  Identities=23%  Similarity=0.346  Sum_probs=61.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee---------ccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII---------HSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~---------~~~~r~~v~~~-----G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|.+.+.......+.|+|..  .   .++....         ...+||.+..+     ..|.|+
T Consensus         5 ~qp~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (120)
T 3b9v_A            5 VESGGGLVQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMN   84 (120)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            457778899999999999985321111179999853  2   1221110         12469988632     379999


Q ss_pred             ecCCCCCCeeeEEEEeecc--CCcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKL--TGERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l--~~~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.+..  ++...-...++|.|+
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~~~~~~~~fg~GT~l~V~  119 (120)
T 3b9v_A           85 SLRAEDTA-VYYCARWGGDGFYAMDYWGQGTLVTVS  119 (120)
T ss_dssp             SCCGGGCE-EEEEEEECTTSSBCCSSCCCCEEEEEC
T ss_pred             CCCHHHCE-EEEEEEEcCCCccccceECCCEEEEec
Confidence            99999995 9999998752  112123457777774

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=99.05  E-value=9.3e-10  Score=72.32  Aligned_cols=81  Identities=21%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeC--Cee--ee-e-eee------ccCCcEEEcc----CCcEEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLRE--GVS--EA-R-SII------HSGGRYSITT----AGALHI   71 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd--~~~--~~-~-~~~------~~~~r~~v~~----~G~L~I   71 (114)
                      +....|....+.+|.+|.|+|...+...... .+.|.|.  +..  ++ . ...      .-.+|+.+..    +.+|.|
T Consensus         3 ~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I   82 (119)
T 2pnd_A            3 PTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQI   82 (119)
T ss_dssp             CCCBCCSEEEEETTSCEEECCBCCCCTTCEEEEEEEEEEETTEEEEEEEEETTEEECCSGGGTTTEEECCSSTTBCCEEE
T ss_pred             ccccCCceEEEEcCCcEEEEEEEcCCCCCCceEEEEEEeCCCCceEEEEEcCCCceeecccccCcEEEccCCCCCEEEEE
Confidence            3344677889999999999999754222222 5799985  211  11 1 000      1146777642    457999


Q ss_pred             eecCCCCCCeeeEEEEeec
Q psy9140          72 RDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ++++.+|+| .|.|.+.+.
T Consensus        83 ~~v~~~D~G-~Y~C~v~~~  100 (119)
T 2pnd_A           83 NTLQMDDRN-HYTCEVTWQ  100 (119)
T ss_dssp             SSCCGGGCE-EEEEEEEEE
T ss_pred             ccCCcccCE-EEEEEEEEC
Confidence            999999995 999999874

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.05  E-value=5.3e-11  Score=84.49  Aligned_cols=80  Identities=19%  Similarity=0.315  Sum_probs=51.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      .+.+.+.+..+.+|+++.|.|.+.++.++++.++|+||+..+...       ....++.|.+.  ..|.|..++.+|+| 
T Consensus       136 ~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g-  212 (233)
T 3bqu_C          136 TVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERHN-  212 (233)
T ss_dssp             EEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCC-
T ss_pred             EEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEE--EEEEECHHHhCCCC-
Confidence            344444444455799999999997643222279999999864211       01234455443  57999999999995 


Q ss_pred             eeEEEEeecc
Q psy9140          82 RYYCQTTHKL   91 (114)
Q Consensus        82 ~Y~C~a~n~l   91 (114)
                      .|+|.|.|..
T Consensus       213 ~Y~C~a~n~~  222 (233)
T 3bqu_C          213 SYTCEATHKT  222 (233)
T ss_dssp             CEEEEEEEC-
T ss_pred             CEEEEEEeCC
Confidence            9999999963

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.05  E-value=6.1e-11  Score=84.03  Aligned_cols=82  Identities=21%  Similarity=0.367  Sum_probs=54.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee------eccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI------IHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~------~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      +.+.+.+.+..+.+|+++.|.|.+.++.++++.++|+||+..+....      ...++.|.+  .+.|.|.+++.+|+| 
T Consensus       136 p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G-  212 (234)
T 2j6e_L          136 PSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAA--SSYLSLTPEQWKSHR-  212 (234)
T ss_dssp             CCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBC--CEEECCCGGGTTTSC-
T ss_pred             CcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEE--EEEEEECHHHcCCCC-
Confidence            33444444444567999999999976543323899999998652100      012233322  246999999999995 


Q ss_pred             eeEEEEeeccC
Q psy9140          82 RYYCQTTHKLT   92 (114)
Q Consensus        82 ~Y~C~a~n~l~   92 (114)
                      .|+|.|.|...
T Consensus       213 ~Y~C~a~n~~~  223 (234)
T 2j6e_L          213 SYSCQVTHEGS  223 (234)
T ss_dssp             CEEEEEEBTTB
T ss_pred             eEEEEEEeCCC
Confidence            99999999743

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.04  E-value=7.9e-10  Score=81.20  Aligned_cols=94  Identities=19%  Similarity=0.307  Sum_probs=61.5

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeeee---------ccCCcEEEcc-----CCcEEEeec
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSII---------HSGGRYSITT-----AGALHIRDT   74 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~~---------~~~~r~~v~~-----~G~L~I~~v   74 (114)
                      +....+.+|++|.|.|.+.+.......+.|+|++  ..   ++....         ..++||.+..     ++.|.|.++
T Consensus       145 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  224 (264)
T 2gjj_A          145 SGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSL  224 (264)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcC
Confidence            3445799999999999996543211289999973  21   111000         1156887642     458999999


Q ss_pred             CCCCCCeeeEEEEeec--cCCcEEeCCCeEEEEecc
Q psy9140          75 GMEDSYIRYYCQTTHK--LTGERKISPPSQVMVSEI  108 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~--l~~~~~~s~~a~L~V~~~  108 (114)
                      +.+|+| .|.|.|.|.  +.....-...+.|.|+.+
T Consensus       225 ~~~DsG-~Y~C~a~n~~~~~~~~~fg~gt~l~v~~~  259 (264)
T 2gjj_A          225 TSEDSA-DYYCVRSGNYEEYAMDYWGQGTSVTVSSH  259 (264)
T ss_dssp             CGGGCE-EEEEEEECSGGGCSCCCBCCCEEEEEC--
T ss_pred             CcccCE-EEEEEEecCCCCcceEEECCCEEEEEecc
Confidence            999995 999999995  122112356789998864

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.04  E-value=1.1e-09  Score=78.48  Aligned_cols=94  Identities=18%  Similarity=0.326  Sum_probs=62.7

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEccCCc-----EEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITTAGA-----LHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~~G~-----L~I~   72 (114)
                      .+|....|.+|.+|.|.|.+.++..+...+.|+|..  ..   ++...         ....+||.+..++.     |.|+
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (230)
T 3n9g_H            5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS   84 (230)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            456678899999999999985422121278999742  11   11100         11247999875554     9999


Q ss_pred             ecCCCCCCeeeEEEEeecc-----CCcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKL-----TGERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l-----~~~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.+..     +.....+..+.|.|.
T Consensus        85 ~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~  122 (230)
T 3n9g_H           85 SLRSEDTA-VYYCARDWGSNYVWGSYPKYWGQGTLVTVS  122 (230)
T ss_dssp             SCCGGGCE-EEEEEEECCCSSSTTCCEEEECCCEEEEEC
T ss_pred             CCChhhCE-EEEEEEccCCCCcccccccccCCCEEEEEE
Confidence            99999995 9999999853     112234557788885

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=99.04  E-value=2.3e-09  Score=71.57  Aligned_cols=96  Identities=22%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee--------eccCCcEEEcc-----CCcEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI--------IHSGGRYSITT-----AGALHIRD   73 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~--------~~~~~r~~v~~-----~G~L~I~~   73 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .|+...        ....+||.+..     +..|.|++
T Consensus         5 ~qp~~~~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~   84 (124)
T 1yc7_A            5 VESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNS   84 (124)
T ss_dssp             EEECCEEECTTCCEEEEEEEESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCCCEEEecCCCEEEEEEEeCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            456778899999999999985322111279999853  1   111111        01146998863     22699999


Q ss_pred             cCCCCCCeeeEEEEeec-cCCcEEeCCCeEEEEecc
Q psy9140          74 TGMEDSYIRYYCQTTHK-LTGERKISPPSQVMVSEI  108 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~-l~~~~~~s~~a~L~V~~~  108 (114)
                      ++.+|+| .|.|.+.+. .+....-...++|.|+.+
T Consensus        85 ~~~~Dsg-~Y~C~~~~~~~~~~~~fG~GT~l~v~~~  119 (124)
T 1yc7_A           85 LQREDTG-MYYCQIQCGVRSIREYWGQGTQVTVSSH  119 (124)
T ss_dssp             CCGGGCE-EEEEEEEECSSSCEEEECCCEEEEEC--
T ss_pred             CCHHHCE-EEEEEEEeCCCcccceECCCEEEEEecc
Confidence            9999995 999999975 112334466889988854

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.04  E-value=6.8e-11  Score=82.78  Aligned_cols=80  Identities=20%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+.+....+..|+.+.|.|.+.++.++++.++|+||+..+..     .....+++|.+.  ..|.|..++.+|+| .|+
T Consensus       124 ~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--s~l~i~~~~~~d~g-~Y~  200 (218)
T 3s96_B          124 LTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMAS--SFLHLTSDQWRSHN-SFT  200 (218)
T ss_dssp             EEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEE--EEEEEEHHHHHTCS-CEE
T ss_pred             EEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEE--EEEEEeHHHccCCC-eEE
Confidence            4455555566789999999999663222227999999987521     011125667664  56999999999995 999


Q ss_pred             EEEeeccC
Q psy9140          85 CQTTHKLT   92 (114)
Q Consensus        85 C~a~n~l~   92 (114)
                      |.|.|..+
T Consensus       201 C~a~n~~~  208 (218)
T 3s96_B          201 CQVTHEGD  208 (218)
T ss_dssp             EEEEETTE
T ss_pred             EEEEeCCC
Confidence            99999753

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.04  E-value=2.4e-10  Score=80.28  Aligned_cols=92  Identities=17%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             eeeccceeEEEeCCeE-EEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccC------------CcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIA-VLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTA------------GALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~A-vL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~------------G~L~I~~v~   75 (114)
                      +...+.+..+.+|..+ .|.|.+ .+++.+  .++|+|++..+... .....|+.+..+            +.|.|....
T Consensus       121 ~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p--~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~  197 (231)
T 2pet_A          121 VSPNKGTLSVMEDSAQEIATCNSRNGNPAP--KITWYRNGQRLEVP-VEMNPEGYMTSRTVREASGLLSLTSTLYLRLRK  197 (231)
T ss_dssp             EEECCSSCCTTCCSEEEEEEEEEEEEBSCC--EEEEEETTEECCCC-SSCCSSEEEEEEEEECTTSCEEEEEEEEEECCG
T ss_pred             EecCCcceeecCCCceEEEEEEeECcccCC--EEEEEECCccCccc-cccccceeecceeEecCCCeEEEEEEEEEecch
Confidence            4556666678899988 999998 665444  89999999865211 111246655431            568887555


Q ss_pred             CCCCCeeeEEEEeeccCC--cEE-eCCCeEEEE
Q psy9140          76 MEDSYIRYYCQTTHKLTG--ERK-ISPPSQVMV  105 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~--~~~-~s~~a~L~V  105 (114)
                      .+|. |.|+|.|.|.+..  ... .|...+|.|
T Consensus       198 ~dd~-g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          198 DDRD-ASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             GGGG-CEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             hhCC-ceEEEEEEcCCcccccccccccceEEEE
Confidence            5557 5999999996321  112 444555554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.04  E-value=5e-10  Score=77.72  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=47.9

Q ss_pred             EeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcE-E---EeecCCCCCCeeeEEEEeeccCC
Q psy9140          20 LRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGAL-H---IRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        20 ~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L-~---I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      ..|+.+.|.|.+. +++.|  .++|+||+..+.    ..+.++...++|.| .   +..++.+|. |.|+|.|.|..+.
T Consensus       119 ~~g~~~~l~C~~~~g~P~p--~i~W~k~g~~l~----~~~~~~~~~~~~~~~~~~~~~~v~~~d~-g~Y~C~a~n~~~~  190 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEP--HLSWLENGEELN----AINTTVSQDPETELYAVSSKLDFNMTTN-HSFMCLIKYGHLR  190 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCE--EEEEEESSCEEC----CSEEEEEECTTTCCEEEEEEEEEETTSC-EEEEEEEEETTCC
T ss_pred             CCCCeEEEEEecCCccCCC--EEEEEECCEECc----cccceEEecCCCcEEEEEEEEEEEecCC-CEEEEEEecCcce
Confidence            4588999999994 66554  899999988641    22345656555444 2   346678898 5999999998653

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.04  E-value=2.8e-11  Score=84.83  Aligned_cols=79  Identities=19%  Similarity=0.296  Sum_probs=55.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee------eccCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI------IHSGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~------~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      +.+.+....+.+|.++.|.|.+.++.++.+.++|+||+..+....      ...++ |.+.  +.|.|.+++.+|+| .|
T Consensus       116 v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~~--s~L~i~~~~~~d~G-~Y  191 (212)
T 1nfd_E          116 VTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQN-YMTS--SYLSLTADQWKSHN-RV  191 (212)
T ss_dssp             EECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSC-EEEE--EBCCEEHHHHHTCS-CE
T ss_pred             EEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCC-ceEE--EEEEEchhhcCCCC-eE
Confidence            444444445668999999999976532212899999998652110      01233 5443  67999999999995 99


Q ss_pred             EEEEeeccC
Q psy9140          84 YCQTTHKLT   92 (114)
Q Consensus        84 ~C~a~n~l~   92 (114)
                      +|.|.|...
T Consensus       192 ~C~a~n~~~  200 (212)
T 1nfd_E          192 SCQVTHEGE  200 (212)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEeCCc
Confidence            999999754

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.03  E-value=3.5e-10  Score=80.00  Aligned_cols=72  Identities=11%  Similarity=0.329  Sum_probs=52.6

Q ss_pred             eEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeeeee---eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          17 TFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSEAR---SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~---~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      ..+.+|..+.|.|.+.++ +++ +.++|.|++..+..   +....++.|.+.  +.|.|.+++.+| | .|+|.|.|..+
T Consensus       137 ~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d-g-~y~C~a~n~~~  211 (222)
T 1q9r_B          137 SAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVPSSTWPS-E-TVTCNVAHPAS  211 (222)
T ss_dssp             SCCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEEEEEEEETTEEEEE--EEEEEETTTTTT-S-CCEEEEEEGGG
T ss_pred             ccccCCCcEEEEEEEccEECCC-CEEEEecCCeEcceEeccccccCCcEEEE--EEEEECchhcCC-C-eEEEEEEccCC
Confidence            346689999999999764 332 27999999875421   111134466553  689999999999 6 99999999876


Q ss_pred             C
Q psy9140          93 G   93 (114)
Q Consensus        93 ~   93 (114)
                      .
T Consensus       212 ~  212 (222)
T 1q9r_B          212 S  212 (222)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=99.03  E-value=4.4e-09  Score=72.00  Aligned_cols=96  Identities=17%  Similarity=0.258  Sum_probs=65.5

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee-----eccCCcEEEc--c---CCcEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI-----IHSGGRYSIT--T---AGALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~-----~~~~~r~~v~--~---~G~L~I~~v~   75 (114)
                      +..|....+.+|.+|.|.|........+ .+.|+|..  ..   |+...     ....+||.+.  +   +..|.|++++
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~   82 (142)
T 2ol3_A            4 TQTQTSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   82 (142)
T ss_dssp             BCCCSEEEEETTCCEEECCBCCCCCSSC-EEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCC
T ss_pred             EecCCeEEEecCCCEEEEEEecCCcCCc-eEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCC
Confidence            4457788999999999999985432122 68999853  21   22111     0125799984  2   3379999999


Q ss_pred             CCCCCeeeEEEEeecc---CCcEEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKL---TGERKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l---~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+| .|.|.+.+..   .....-...++|.|...
T Consensus        83 ~~Dsg-~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~  117 (142)
T 2ol3_A           83 IEDSA-VYFCAMRGDYGGSGNKLIFGTGTLLSVKPG  117 (142)
T ss_dssp             TTTCE-EEEEEEECSSSSCSSCEEECCCEEEEEECC
T ss_pred             hhhCE-EEEEEEEcCcCCcccccEECCCEEEEEecC
Confidence            99995 9999998732   12334566889999853

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=99.03  E-value=2.8e-10  Score=74.23  Aligned_cols=90  Identities=23%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee--------ccCCcEEEccC-----CcEEEee
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII--------HSGGRYSITTA-----GALHIRD   73 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~--------~~~~r~~v~~~-----G~L~I~~   73 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .++....        ...+||.+..+     ..|.|++
T Consensus         5 ~q~~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (114)
T 1sjv_A            5 QESGGGLVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNS   84 (114)
T ss_dssp             ---CCCCCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECS
T ss_pred             ECCCCEEEcCCCCEEEEEEEcCccccCCeEEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEEEEECC
Confidence            456677899999999999985432111178999853  1   1211000        12479988632     3699999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      ++.+|+| .|.|.+.+.   ...-...++|.|
T Consensus        85 ~~~~DsG-~Y~C~~~~~---~~~fg~GT~l~V  112 (114)
T 1sjv_A           85 LEPEDTA-VYYCYTHYF---RSYWGQGTQVTV  112 (114)
T ss_dssp             CCGGGCS-EEEEEECCC---CCCCCCCCCCCC
T ss_pred             CCHHHCE-EEEEeEEcC---cceECCCEEEEe
Confidence            9999996 999999872   212233555554

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.02  E-value=3.4e-09  Score=76.77  Aligned_cols=97  Identities=25%  Similarity=0.414  Sum_probs=66.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeee-ee---eccCCcEEEcc-----CCcEEEee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEAR-SI---IHSGGRYSITT-----AGALHIRD   73 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~-~~---~~~~~r~~v~~-----~G~L~I~~   73 (114)
                      +..+..|....+.+|.+|.|.|.+.+...+  .+.|+|..  .   .+++ ..   ....+||.+..     +..|.|++
T Consensus         4 ~~v~Q~p~~~~v~~G~svtL~C~~s~~~~~--~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~   81 (210)
T 2eys_A            4 NQVEQSPQSLIILEGKNCTLQCNYTVSPFS--NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITA   81 (210)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEECCSSCC--EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESS
T ss_pred             CeEEEeCCEEEEecCCCEEEEEEECCCCCC--eEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEcc
Confidence            344555888999999999999998554333  78998853  2   2221 00   11268999852     23799999


Q ss_pred             cCCCCCCeeeEEEEeecc--CCcEEeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKL--TGERKISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l--~~~~~~s~~a~L~V~~  107 (114)
                      ++.+|+| .|.|.+.+..  .........++|.|..
T Consensus        82 ~~~~Dsg-~Y~C~~~~~~~~~~~~~fg~gt~L~V~~  116 (210)
T 2eys_A           82 SQLSDSA-SYICVVSDRGSTLGRLYFGRGTQLTVWP  116 (210)
T ss_dssp             CCGGGCE-EEEEEEESCSSTTCCEEECCCEEEEEEC
T ss_pred             CCcccCc-eEEEEEEccCCCcccceECCCEEEEEEC
Confidence            9999994 9999998742  1222344567888874

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=99.02  E-value=5.6e-09  Score=69.33  Aligned_cols=93  Identities=16%  Similarity=0.229  Sum_probs=63.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee-------ccCCcEEEcc--C--CcEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII-------HSGGRYSITT--A--GALHIRDT   74 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~-------~~~~r~~v~~--~--G~L~I~~v   74 (114)
                      ...|....+.+|.+|.|.|....  .. ..+.|+|..  .   .++....       ...+||.+..  +  ..|.|+++
T Consensus         5 ~q~p~~v~v~~G~~vtL~C~~~~--~~-~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v   81 (121)
T 2oi9_C            5 TQSPRNKVAVTGEKVTLSCNQTN--NH-NNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESA   81 (121)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS--CC-SEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSC
T ss_pred             EeCCCeEEecCCCcEEEEEEecC--CC-CeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCC
Confidence            44578889999999999999632  11 279999853  1   1211100       1147998752  2  36999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +.+|+| .|.|.+.+.  +...-...++|.|.+..
T Consensus        82 ~~~DsG-~Y~C~~~~~--~~~~fg~GT~l~v~~~~  113 (121)
T 2oi9_C           82 TPSQTS-VYFCASGGG--GTLYFGAGTRLSVLSSA  113 (121)
T ss_dssp             CGGGCE-EEEEEEESS--SCEEECCCEEEEEEC--
T ss_pred             CHHHCE-EEEEEEccC--CccEECCCeEEEEechh
Confidence            999995 999999875  34455678899998643

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.02  E-value=6e-10  Score=86.79  Aligned_cols=95  Identities=18%  Similarity=0.333  Sum_probs=64.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee---------eccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI---------IHSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~---------~~~~~r~~v~~~-----G~L~I~   72 (114)
                      ++|....+.+|++|+|.|.+.+.......+.|+|++  ..   ++...         ....+||.+..+     +.|.|.
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (457)
T 1hzh_H            5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (457)
T ss_dssp             EECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEEC
Confidence            456678899999999999986543111179999852  21   11100         012579988643     379999


Q ss_pred             ecCCCCCCeeeEEEEeeccC------C-c--EEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLT------G-E--RKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~------~-~--~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|+|.|.|..+      + .  ...+..+.|.|..
T Consensus        85 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~  127 (457)
T 1hzh_H           85 SLRSADTA-VYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS  127 (457)
T ss_dssp             SCCGGGCE-EEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECS
T ss_pred             CCCcccCE-EEEEEEecCCccccccccccccceECCcEEEEecC
Confidence            99999995 99999999753      0 0  0234567888875

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=99.02  E-value=8.5e-10  Score=72.44  Aligned_cols=80  Identities=19%  Similarity=0.284  Sum_probs=56.9

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ce---e--eeeeee-----cc---CCcEEEccCC---cEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GV---S--EARSII-----HS---GGRYSITTAG---ALH   70 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~---~--~~~~~~-----~~---~~r~~v~~~G---~L~   70 (114)
                      .++..|....+.+|.+|.|.|...+..... .+.|+|.  +.   .  ++....     ..   .+||.+..++   .|.
T Consensus         2 ~~~q~p~~v~v~~G~~vtL~C~~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~   80 (114)
T 2hp4_A            2 QFRVSPLDRTWNLGETVELKCQVLLSNPTS-GASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVLT   80 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCS-CEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEEE
T ss_pred             ccEeCCCEEEEcCCCCEEEEEEeecCCCCc-eEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEEE
Confidence            467788899999999999999985432112 7899873  33   1  221110     11   4789875433   699


Q ss_pred             EeecCCCCCCeeeEEEEeec
Q psy9140          71 IRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      |++++.+|+| .|.|.+.+.
T Consensus        81 I~~~~~~Dsg-~Y~C~~~~~   99 (114)
T 2hp4_A           81 LSDFRRENEG-YYFCSALSN   99 (114)
T ss_dssp             ESSCCGGGCE-EEEEEEEET
T ss_pred             ECCCCHHHCE-EEEEEEecC
Confidence            9999999995 999999974

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=99.02  E-value=1.9e-09  Score=71.15  Aligned_cols=91  Identities=18%  Similarity=0.120  Sum_probs=61.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeee--ee--------e----ccCCcEEEcc-CCcEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEAR--SI--------I----HSGGRYSITT-AGALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~--~~--------~----~~~~r~~v~~-~G~L~I~~v~   75 (114)
                      ..|+...+.+|.++.|+|.++..  ... .|.|.++. .++.  +.        .    .-.+|..+.. +|+|.|+|++
T Consensus         4 ~~p~~V~~~~G~sVtL~c~~~~~--~~~~~i~W~~~~-~ia~~~~~~~~~~~~~~~~~~~f~~Rl~l~~~~~SL~I~nl~   80 (111)
T 2pkd_A            4 SEIFTVNGILGESVTFPVNIQEP--RQVKIIAWTSKT-SVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLR   80 (111)
T ss_dssp             -CCEEEEEETTSCEEECCCCCTT--CCEEEEEEESSS-EEEEEECCCSSSCCEEEECSGGGTTCEEECTTTCCEEECSCC
T ss_pred             CCceEEEEEeCCCEEEeCccCCC--CeeeEEEEecCC-EEEEEECCCCCCcceeEEeCCCcCCcEEEeCCCEEEEECCCC
Confidence            46778889999999999998532  234 89999643 2221  00        0    1136777764 7999999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+|+| .|+|.+...-. .......-.|.|.+
T Consensus        81 ~~DsG-~Y~c~i~~~~~-~~~~~~~~~L~V~~  110 (111)
T 2pkd_A           81 MEDAG-DYKADINTQAD-PYTTTKRYNLQIYR  110 (111)
T ss_dssp             GGGCE-EEEEEEEESST-TSEEEEEEEEEEEC
T ss_pred             HHHCE-EEEEEEEeCCC-CceEEEEEEEEEEc
Confidence            99995 99999987532 11122355677654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.02  E-value=1e-09  Score=76.46  Aligned_cols=65  Identities=17%  Similarity=0.293  Sum_probs=48.3

Q ss_pred             EEeCCeEEEEeecCCCCC--CcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          19 VLRGNIAVLQCNIPAYNH--NLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~--~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +.+|..+.|.|.+.+...  |.+.++|.|++..+      .+.++  ..++.|.|..+..+|.| .|+|.|.|..+
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~------~~~~~--~~~~~L~i~~~~~~~~g-~Y~C~a~n~~~  201 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSP------LDPET--TRSSELTLTPRPEDHGT-NLTCQMKRQGA  201 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSS------SCSSC--CCSSEEEECCCTTCCSC-EEEEEEECC--
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCcc------CCCCc--eeEEEEEEecccHHcCc-EEEEEEEeCCC
Confidence            678999999999966411  22289999998742      12333  45789999999988884 99999999753

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.02  E-value=2.4e-10  Score=88.53  Aligned_cols=92  Identities=17%  Similarity=0.332  Sum_probs=64.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee---------eccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI---------IHSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~---------~~~~~r~~v~~~-----G~L~I~   72 (114)
                      .+|....|.+|++|.|.|.+.+...+...+.|+|++  ..+   +...         ...++||.+..+     +.|.|.
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS   83 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence            456778899999999999997642111279999974  221   1000         012579988653     479999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|+.+|+| .|+|.|.|...   ..+..++|.|..
T Consensus        84 ~v~~~D~G-~Y~C~~~~~~~---~~~~~~~l~V~~  114 (434)
T 1igy_B           84 SLTSDDSA-VYYCVREGEVP---YWGQGTTVTVSS  114 (434)
T ss_dssp             SBCGGGCS-EECCCCSSSSC---CCCCCEECEECC
T ss_pred             CCChHHCE-EEEEEEEcccc---ccCCceEEEEcc
Confidence            99999996 99999998421   234567888863

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=99.01  E-value=5.6e-10  Score=93.86  Aligned_cols=93  Identities=17%  Similarity=0.262  Sum_probs=66.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .+++..+.+|+++.|.|.+.+ +.+  .+.|++++..+   . ....++.+..+|.|.|.+++.+|+| .|.|.|.|...
T Consensus       539 ~~~~v~v~~g~~~~L~C~~~s-p~a--~v~W~~~~~~l---~-~~~~~~~~~~~~~LlI~~v~~~DsG-~Y~C~A~e~~~  610 (663)
T 1olz_A          539 SYRQHFFKHGGTAELKCSQKS-NLA--RVFWKFQNGVL---K-AESPKYGLMGRKNLLIFNLSEGDSG-VYQCLSEERVK  610 (663)
T ss_dssp             EEEEEEEETTSCEEECCCCSC-TTC--EEEEEESSSBC---C-CCSSSBCCTTTTCEEECSCCGGGCE-EEEEEEEEECS
T ss_pred             cceEEEEecCCcEEEEccCCC-CCC--cEEEEECCeec---c-ccCcceEEecCCeEEEEecCcccCe-EEEEEEEECcc
Confidence            356778999999999998765 333  89999999853   1 1233444445799999999999995 99999999843


Q ss_pred             Cc--EEeCCCeEEEEeccccccc
Q psy9140          93 GE--RKISPPSQVMVSEIALPLK  113 (114)
Q Consensus        93 ~~--~~~s~~a~L~V~~~~~~~~  113 (114)
                      +.  .+......|.|..|+.+.+
T Consensus       611 ~~~~~~~~~~~~l~V~v~P~~~~  633 (663)
T 1olz_A          611 NKTVFQVVAKHVLEVKVVPKPVV  633 (663)
T ss_dssp             SSEEEEEEEEEEEEEEC------
T ss_pred             CCCceEEEEEEEEEEEeCCccCC
Confidence            32  3445678899998887754

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.01  E-value=4.1e-10  Score=80.68  Aligned_cols=93  Identities=13%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             eeeccceeEEEeCCeEEEEeecCC-CCCCcceEEEeeCCeeee------------eeeeccCCcEEEccCCcEEEeecCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPA-YNHNLLLIAWLREGVSEA------------RSIIHSGGRYSITTAGALHIRDTGM   76 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~-~~~~~~~vsW~kd~~~~~------------~~~~~~~~r~~v~~~G~L~I~~v~~   76 (114)
                      +.+.+. ..+.+|..+.|.|.+.+ ++.+ +.++|+||+..+.            ......++.|.+.  ..|.|..++.
T Consensus       122 v~~~~~-~~~~~~~~~~L~C~~~g~~P~p-i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~  197 (248)
T 3pv7_A          122 SRLLLD-QVGMKENEDKYMCESSGFYPEA-INITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVT--SCLKLNSSQE  197 (248)
T ss_dssp             EEEECC---------CEEEEEEEEEBSSC-CEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEE--EEEECC--CC
T ss_pred             eEEecC-CccccCCCcEEEEEEccEECCC-eEEEEEECCccCCCccccccceeecccEECCCCCEEEE--EEEEEcCccc
Confidence            444443 44667888999999976 3332 2799999986321            0122345666553  5799999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      +|.| .|+|.|.|..... ..+....|.|..|
T Consensus       198 ~d~g-~YtC~a~n~~~~~-~~~~~v~l~V~~p  227 (248)
T 3pv7_A          198 DPGT-VYQCVVRHASLHT-PLRSNFTLTAARH  227 (248)
T ss_dssp             CTTC-EEEEEEECTTCSS-CEEEEECC-----
T ss_pred             cCCC-EEEEEEECCCCCC-CcEEEEEEEEcCC
Confidence            9984 9999999986542 2333556666444

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.01  E-value=2.2e-09  Score=84.26  Aligned_cols=95  Identities=19%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee---eeee---------eccCCcEEEccC-----CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE---ARSI---------IHSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~---~~~~---------~~~~~r~~v~~~-----G~L~I~   72 (114)
                      +.|++..+.+|++|.|.|.+.+...+...+.|+|+.  ...   +...         ....+||.+..+     +.|.|+
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence            567888999999999999986543111279999963  211   1100         012579988643     479999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCc---EEeCCCeEEEEec
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGE---RKISPPSQVMVSE  107 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~---~~~s~~a~L~V~~  107 (114)
                      +++.+|+| .|.|.+.|..++.   ...+..++|.|.+
T Consensus        86 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  122 (475)
T 1iga_A           86 SLRPEDTA-VYYCARDPYGGGKSEFDYWGQGTLVTVSS  122 (475)
T ss_pred             CCChhhCE-EEEEEEeccCCCccceeeecCceEEEecc
Confidence            99999995 9999999975421   1244577888874

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.00  E-value=3e-10  Score=78.96  Aligned_cols=58  Identities=9%  Similarity=0.059  Sum_probs=44.9

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      ..+.++.|.|.+.+.+.+  .++|+||+..+     ..+        ..|.|++++.+|+| .|+|.|.|.++.
T Consensus       108 ~~~~~v~L~C~~~g~p~p--~i~W~~~g~~l-----~~~--------~~~~i~~~~~~d~G-~Y~C~a~N~~g~  165 (176)
T 1hng_A          108 WECSNATLTCEVLEGTDV--ELKLYQGKEHL-----RSL--------RQKTMSYQWTNLRA-PFKCKAVNRVSQ  165 (176)
T ss_dssp             EETTTTEEEEECSSCSSC--EEEEEETTEEE-----EEE--------SSSEEEEECSCCSS-CEEEEEEETTEE
T ss_pred             ecCCcEEEEEEecCCCCc--EEEEEECCEEC-----CCC--------CcEEEEEEEccCCe-EEEEEEEecCCC
Confidence            345579999999876543  89999999854     222        23677799999995 999999999864

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.99  E-value=5.9e-09  Score=71.96  Aligned_cols=95  Identities=21%  Similarity=0.253  Sum_probs=66.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC-----ee---eeeeee---------ccCCcEEEc--c---CC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG-----VS---EARSII---------HSGGRYSIT--T---AG   67 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~-----~~---~~~~~~---------~~~~r~~v~--~---~G   67 (114)
                      .+..|....+.+|++|.|.|......... .+.|+|..     ..   |+....         ...+||.+.  +   +-
T Consensus         4 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~-~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~   82 (150)
T 3dmm_D            4 LIQTPSSLLVQTNHTAKMSCEVKSISKLT-SIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRP   82 (150)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCCSSCCC-EEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTTSSSC
T ss_pred             cEECCCeEEEeCCCcEEEEEEecCCCCCc-eEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCCCCEE
Confidence            34568888999999999999985431122 78999852     21   221100         125899886  3   33


Q ss_pred             cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          68 ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        68 ~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .|.|++++.+|+| .|.|.+.+.  +...-...++|.|.+.
T Consensus        83 sL~I~~l~~~Dsg-~Y~C~~~~~--~~~~fG~GT~L~V~~~  120 (150)
T 3dmm_D           83 FLSIMNVKPEDSD-FYFCATVGS--PKMVFGTGTKLTVVDV  120 (150)
T ss_dssp             EEEESSCCGGGCE-EEEEEEECS--SCEEECCCEEEEEESC
T ss_pred             EEEECCCChhhCE-EEEEEEecC--CcceECCCEEEEEeCC
Confidence            6999999999994 999999864  3444567889999863

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.99  E-value=1.7e-10  Score=80.61  Aligned_cols=81  Identities=20%  Similarity=0.327  Sum_probs=58.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSY   80 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~g   80 (114)
                      +.+.+.+.+..+.+|+.+.|.|.+.++.++.+.++|+||+..+...       ....++.|.+.  ..|.|..++.+|+|
T Consensus       113 p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~--s~l~i~~~~~~d~g  190 (213)
T 3r06_A          113 PTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLS--STLSLTKADYERHN  190 (213)
T ss_dssp             CEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCC
T ss_pred             ceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEE--EEEEeCHHHhccCC
Confidence            4456666677777899999999997654322389999999875210       01234555553  47999999999995


Q ss_pred             eeeEEEEeecc
Q psy9140          81 IRYYCQTTHKL   91 (114)
Q Consensus        81 g~Y~C~a~n~l   91 (114)
                       .|+|.|.|..
T Consensus       191 -~YtC~v~n~~  200 (213)
T 3r06_A          191 -LYTCEVTHKT  200 (213)
T ss_dssp             -EEEEEEEETT
T ss_pred             -eEEEEEEecc
Confidence             9999999974

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.99  E-value=2.4e-10  Score=80.75  Aligned_cols=81  Identities=15%  Similarity=0.294  Sum_probs=51.6

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      .+.+.+.....++|+.+.|.|.+.++.++++.++|+||+..+...     ....++.|.+.  ..|.|...+++|.| .|
T Consensus       111 ~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~--s~l~i~~~~~~~~g-~y  187 (207)
T 2vol_A          111 QVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVY--SKLNVQKSNWEAGN-TF  187 (207)
T ss_dssp             EEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEE--EEEEEEHHHHSSCC-EE
T ss_pred             eEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEE--EEEEECHHHcCCCC-EE
Confidence            344555444445799999999997653332389999999865210     01223333332  24667777777875 99


Q ss_pred             EEEEeeccC
Q psy9140          84 YCQTTHKLT   92 (114)
Q Consensus        84 ~C~a~n~l~   92 (114)
                      +|.|.|...
T Consensus       188 tC~a~n~~l  196 (207)
T 2vol_A          188 TCSVLHEGL  196 (207)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEECCCC
Confidence            999999743

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=98.98  E-value=1.8e-09  Score=73.06  Aligned_cols=97  Identities=23%  Similarity=0.384  Sum_probs=62.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee---------ccCCcEEEccC---C--cEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII---------HSGGRYSITTA---G--ALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~---------~~~~r~~v~~~---G--~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .|+....         ...+||.+..+   +  .|.|+
T Consensus         5 ~qp~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~   84 (134)
T 1zvh_A            5 VESGGGSVQAGGSLRLSCAASGYIASINYLGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDNAENTVYLQMN   84 (134)
T ss_dssp             EEECCEEECTTCCEEEEEEEEESGGGEEEEEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEETTTTEEEEEEC
T ss_pred             EcCCCEEEccCCCEEEEEEeCCCCcCCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcCCCCEEEEEEC
Confidence            346678899999999999984321111179999853  1   1221110         11469988632   2  69999


Q ss_pred             ecCCCCCCeeeEEEEeecc-------CCcEEeCCCeEEEEeccc
Q psy9140          73 DTGMEDSYIRYYCQTTHKL-------TGERKISPPSQVMVSEIA  109 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l-------~~~~~~s~~a~L~V~~~~  109 (114)
                      +++.+|+| .|.|.+.+..       .....-...++|.|.+..
T Consensus        85 ~~~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~fG~GT~l~V~~~~  127 (134)
T 1zvh_A           85 SLKPEDTA-LYYCAAARQGWYIPLNSYGYNYWGQGTQVTVSSRG  127 (134)
T ss_dssp             SCCGGGCE-EEEEEEEESSCCCTTCGGGEEEECCCEEEEEC---
T ss_pred             CCCHHHCE-EEEEEEecCcccccccccCccEECCCEEEEEcccc
Confidence            99999995 9999998751       123334568889888654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.98  E-value=5.2e-09  Score=76.34  Aligned_cols=98  Identities=17%  Similarity=0.181  Sum_probs=65.9

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee----eccCCcEEEcc---C--CcEEEeec
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI----IHSGGRYSITT---A--GALHIRDT   74 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~----~~~~~r~~v~~---~--G~L~I~~v   74 (114)
                      .....|....+.+|.+|.|.|.+.+.......+.|+|..  ..   ++...    ....+||.+..   .  ..|.|+++
T Consensus         3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   82 (229)
T 1hxm_A            3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (229)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence            455678889999999999999986432111179998853  21   11100    11258999863   2  27999999


Q ss_pred             CCCCCCeeeEEEEeeccC-----CcEEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLT-----GERKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~-----~~~~~s~~a~L~V~~  107 (114)
                      +.+|+| .|.|.+.+...     ........++|.|..
T Consensus        83 ~~~Dsg-~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~  119 (229)
T 1hxm_A           83 SERDEG-SYYCACDTLGMGGEYTDKLIFGKGTRVTVEP  119 (229)
T ss_dssp             CGGGCE-EEEEEEECCCCSSSCCCCCEEBCCEEEEEEC
T ss_pred             CHhHCe-EEEEEEecCCCcccccchhhcCccEEEEEec
Confidence            999995 99999998521     222234567888885

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.98  E-value=3.4e-09  Score=70.70  Aligned_cols=82  Identities=20%  Similarity=0.313  Sum_probs=56.3

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeeee----eccCCcEEEc--c-CC--cEEEeec
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARSI----IHSGGRYSIT--T-AG--ALHIRDT   74 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~~----~~~~~r~~v~--~-~G--~L~I~~v   74 (114)
                      +++..|....+.+|.+|.|.|...+.......+.|.|...     .++...    ....+||.+.  + ++  .|.|+++
T Consensus        12 ~~~~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l   91 (122)
T 1hkf_A           12 QAQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDL   91 (122)
T ss_dssp             ---CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSC
T ss_pred             hhccCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCC
Confidence            4667788889999999999999854221112789999642     222111    1235899883  2 23  5999999


Q ss_pred             CCCCCCeeeEEEEeecc
Q psy9140          75 GMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l   91 (114)
                      +.+|+| .|.|.+....
T Consensus        92 ~~~Dsg-~Y~C~v~~~~  107 (122)
T 1hkf_A           92 REEDSG-HYWCRIYRPS  107 (122)
T ss_dssp             CGGGCE-EEEEEEECTT
T ss_pred             CHHHCE-EEEEEEEcCC
Confidence            999995 9999999864

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=98.98  E-value=1.6e-09  Score=72.25  Aligned_cols=97  Identities=21%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeCC--e---eeeeee-----e---ccCCcEEEcc---C--CcEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLREG--V---SEARSI-----I---HSGGRYSITT---A--GALHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~---~~~~~~-----~---~~~~r~~v~~---~--G~L~I~   72 (114)
                      .+|....+.+|.+|.|.|...+.. ..+..+.|+|..  .   .|+...     .   ...+||.+..   +  ..|.|+
T Consensus         5 ~qp~~~~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (127)
T 3cx5_J            5 QESGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLN   84 (127)
T ss_dssp             EEEECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEEeCcccCCCcEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEEC
Confidence            456677899999999999985432 121278998842  2   222111     0   1146887752   2  269999


Q ss_pred             ecCCCCCCeeeEEEEeecc----CCcEEeCCCeEEEEeccc
Q psy9140          73 DTGMEDSYIRYYCQTTHKL----TGERKISPPSQVMVSEIA  109 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l----~~~~~~s~~a~L~V~~~~  109 (114)
                      +++.+|+| .|.|.+.+..    .....-...++|.|+...
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~~~~~~~~~~fg~GT~L~V~~~~  124 (127)
T 3cx5_J           85 SVTTEDTA-TYYCARSEYYSVTGYAMDYWGQGTTVTVSSAW  124 (127)
T ss_dssp             SCCGGGCE-EEEEEEEEEETTTEEEEEEECCCEEEEECSCC
T ss_pred             CCCHHHCE-EEEEEEEeCccccccccceeCCCEEEEEeccc
Confidence            99999995 9999998742    122234568899998654

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.98  E-value=2.8e-09  Score=77.06  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=62.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCC--cceEEEeeCC--ee---eeeee--------------eccCCcEEEccCC---
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHN--LLLIAWLREG--VS---EARSI--------------IHSGGRYSITTAG---   67 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~--~~~vsW~kd~--~~---~~~~~--------------~~~~~r~~v~~~G---   67 (114)
                      .+|....|.+|.+|.|.|.+.+...+  ...+.|+|..  ..   ++...              ....+||.+..++   
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            45677889999999999998554322  2279999842  11   11101              0124799886433   


Q ss_pred             --cEEEeecCCCCCCeeeEEEEeeccCC----------cEEeCCCeEEEEe
Q psy9140          68 --ALHIRDTGMEDSYIRYYCQTTHKLTG----------ERKISPPSQVMVS  106 (114)
Q Consensus        68 --~L~I~~v~~~D~gg~Y~C~a~n~l~~----------~~~~s~~a~L~V~  106 (114)
                        .|.|++++.+|+| .|.|.+.+..++          ....+..+.|.|.
T Consensus        85 ~~~L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~  134 (239)
T 3tv3_H           85 LVFLKLNSVTAADTA-TYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVS  134 (239)
T ss_dssp             EEEEEECSCCGGGCE-EEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEEC
T ss_pred             EEEEEECCCChhhCE-EEEEEEecCccccccccccccceeeeCCCcEEeec
Confidence              3999999999994 999999875310          1233556677775

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=98.98  E-value=3.8e-09  Score=71.94  Aligned_cols=97  Identities=22%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeeee---------ccCCcEEEccC---C--cEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSII---------HSGGRYSITTA---G--ALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~~---------~~~~r~~v~~~---G--~L~I~~   73 (114)
                      +|....+.+|.+|.|.|...+.......+.|+|..  .   .|+....         ...+||.+..+   +  .|.|++
T Consensus         6 qp~~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~   85 (137)
T 1rjc_A            6 ASGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNS   85 (137)
T ss_dssp             CBCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECS
T ss_pred             ecCCEEEecCCCEEEEEEecCCcCCCcEEEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEcCCCCEEEEEECC
Confidence            46677899999999999985422111179999853  1   1221110         12479988632   2  699999


Q ss_pred             cCCCCCCeeeEEEEeecc----------CCcEEeCCCeEEEEecccc
Q psy9140          74 TGMEDSYIRYYCQTTHKL----------TGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l----------~~~~~~s~~a~L~V~~~~~  110 (114)
                      ++.+|+| .|.|.+.+..          .....-...++|.|.++.+
T Consensus        86 ~~~~Dsg-~Y~C~~~~~~~~~~~~~~~~~~~~~fG~GT~l~V~~~~~  131 (137)
T 1rjc_A           86 LKPEDTA-MYYCAADTSTWYRGYCGTNPNYFSYWGQGTQVTVSSRGR  131 (137)
T ss_dssp             CCGGGCE-EEEEEECCTTSCCSSCCCCGGGCCEECCCEEEEEC----
T ss_pred             CCHHHCE-EEEEEEEcCCccccccccccccccEECCCEEEEEccCcc
Confidence            9999995 9999998751          1222345688899886543

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.98  E-value=3.9e-09  Score=75.62  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee----eccCCcEEEcc-----CCcEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI----IHSGGRYSITT-----AGALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~----~~~~~r~~v~~-----~G~L~I~~v~~   76 (114)
                      +..|+...+.+|.+|.|.|.+.+....  .+.|+|..  .   .++...    ....+||.+..     +..|.|++++.
T Consensus         4 ~q~p~~v~v~~G~~v~L~C~~s~~~~~--~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   81 (203)
T 2bnu_A            4 TQIPAALSVPEGENLVLNCSFTDSAIY--NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (203)
T ss_dssp             EEECSEEEEETTCCEEEEEEESCCCEE--EEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EEcCCEEEEeCCCCEEEEEEECCCCcc--eEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCc
Confidence            345788899999999999998543222  78998853  2   122111    12358998852     23799999999


Q ss_pred             CCCCeeeEEEEeecc--CCcEEeCCCeEEEEec
Q psy9140          77 EDSYIRYYCQTTHKL--TGERKISPPSQVMVSE  107 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l--~~~~~~s~~a~L~V~~  107 (114)
                      +|+| .|.|.+.+..  .........++|.|+.
T Consensus        82 ~Dsg-~Y~C~~~~~~~~~~~~~~g~gt~L~V~~  113 (203)
T 2bnu_A           82 GDSA-TYLCAVRPTSGGSYIPTFGRGTSLIVHP  113 (203)
T ss_dssp             GGCE-EEEEEEEECSSSTTCCEECCCEEEEEEC
T ss_pred             ccCe-EEEEEEEcCcCcceeeeeCCCEEEEEeC
Confidence            9995 9999998742  1111234567888875

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.97  E-value=5.7e-10  Score=75.80  Aligned_cols=92  Identities=21%  Similarity=0.314  Sum_probs=63.8

Q ss_pred             ccceeEEEeCCeEEEEeecC-CCCCCcceEEEeeCC--e---eeeeee--e-------cc-CCcEEEccCC---cEEEee
Q psy9140          13 NTGNTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREG--V---SEARSI--I-------HS-GGRYSITTAG---ALHIRD   73 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~--~---~~~~~~--~-------~~-~~r~~v~~~G---~L~I~~   73 (114)
                      .|+...+.+|.+|.|.|... +....  .+.|+|..  .   .++...  .       .. .+||.+..++   .|.|++
T Consensus         5 ~p~~v~v~~G~~vtL~C~~s~~~~~~--~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~L~I~~   82 (137)
T 3bdb_A            5 ELHVKTVKRGENVTMECSMSKVTNKN--NLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIG   82 (137)
T ss_dssp             BCEECCCCTTCEECCCCBCTTCCCGG--GBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEES
T ss_pred             CCCeEEEcCCCCEEEEeecCCCcCcc--eEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEecCCEEEEEECC
Confidence            46677899999999999985 43222  78999853  2   222100  0       01 5899886443   699999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      ++.+|+| .|.|.+.+.  ....-...++|.|.+..
T Consensus        83 ~~~~Dsg-~Y~C~~~~~--~~~~fg~GT~L~V~~~~  115 (137)
T 3bdb_A           83 AREDDGG-EYFCGEVEG--IIIKFTSGTRLQFEGSN  115 (137)
T ss_dssp             CCSTTCE-EEEEEEECS--SCEEEEEEEEECCCCCC
T ss_pred             CCHHHCE-EEEEEEccC--CeEEECCCEEEEEECCC
Confidence            9999995 999999975  23334557788887643

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.97  E-value=6.6e-10  Score=78.45  Aligned_cols=77  Identities=16%  Similarity=0.276  Sum_probs=54.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCC-CCCcceEEEeeCCeee---eeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAY-NHNLLLIAWLREGVSE---ARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~---~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.+....+.+|.++.|.|.+.++ +.+ +.++|.|++..+   ..+.....++|.+  ++.|.|.+++.+| | .|+|.|
T Consensus       130 ~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~-g-~Y~C~a  204 (220)
T 1pz5_B          130 PLVPGCSDTSGSSVTLGCLVKGYFPEP-VTVKWNYGALSSGVRTVSSVLQSGFYSL--SSLVTVPSSTWPS-Q-TVICNV  204 (220)
T ss_dssp             EECCCSCCSCSSSEEEEEEEEEEBSSC-CEEEEGGGTCCTTEEECCCEEETTEEEE--EEEEEECGGGTTT-S-CCEEEE
T ss_pred             EcccccccCCCCcEEEEEEEEEEeCCC-eEEEEecCCcccceEEcCCcccCCeEEE--EEEEEEcchhcCC-c-eEEEEE
Confidence            33334456789999999999765 332 279999998731   1111112267766  4789999999866 5 999999


Q ss_pred             eeccCC
Q psy9140          88 THKLTG   93 (114)
Q Consensus        88 ~n~l~~   93 (114)
                      .|..+.
T Consensus       205 ~n~~~~  210 (220)
T 1pz5_B          205 AHPASK  210 (220)
T ss_dssp             EEGGGT
T ss_pred             EECCcc
Confidence            998764

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.97  E-value=3e-09  Score=76.29  Aligned_cols=94  Identities=16%  Similarity=0.257  Sum_probs=61.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee---------eccCCcEEEccCCc-----EEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI---------IHSGGRYSITTAGA-----LHIR   72 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~---------~~~~~r~~v~~~G~-----L~I~   72 (114)
                      .+|....|.+|.+|.|.|.+.++..+...+.|+|..  .   .++...         ....+||.+..++.     |.|+
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (226)
T 3mlr_H            5 VESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWT   84 (226)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEES
T ss_pred             EcCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEEC
Confidence            456678899999999999985432121278999842  1   111100         01247998865443     9999


Q ss_pred             ecCCCCCCeeeEEEEeeccC------CcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKLT------GERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~------~~~~~s~~a~L~V~  106 (114)
                      +++.+|+| .|.|.+.+...      .....+..+.|.|.
T Consensus        85 ~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~  123 (226)
T 3mlr_H           85 TLQASDTG-KYFCTRLYLFEGAQSSNAFDLWGQGTMILVS  123 (226)
T ss_dssp             SCCGGGCE-EEEEEEEEEEESSSEEEEEEEECCCEEEEEC
T ss_pred             CCCcccCE-EEEEeEccCCCcccccchhhhhCCccEEeec
Confidence            99999995 99999987521      01223456677775

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.97  E-value=1.7e-09  Score=76.88  Aligned_cols=66  Identities=17%  Similarity=0.305  Sum_probs=48.5

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcEEeCC
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGERKISP   99 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~   99 (114)
                      .+|++++|.|.+|   .+  .++|+||+..+.     ..    ...++.|.|.+++.+|+| .|+|.+.+.      .|.
T Consensus        16 ~~G~~v~L~C~~p---~~--~i~W~k~g~~l~-----~~----~~~~~~L~i~~v~~~DsG-~Y~C~~~~~------~s~   74 (204)
T 1sy6_A           16 QEDGSVLLTCDAE---AK--NITWFKDGKMIG-----FL----TEDKKKWNLGSNAKDPRG-MYQCKGSQN------KSK   74 (204)
T ss_dssp             CSSSEEEEEECSC---SS--EEEEEETTEEEE-----EE----ESSCCCEEEEEGGGCCEE-EEEEESSSS------CCC
T ss_pred             cCCCeEEEEEcCC---CC--EEEEEECCEECC-----CC----CCCCCeEEeCCCCcCCCE-EEEEEecCC------CCe
Confidence            5899999999982   23  899999998642     11    124689999999999995 999998653      233


Q ss_pred             CeEEEEe
Q psy9140         100 PSQVMVS  106 (114)
Q Consensus       100 ~a~L~V~  106 (114)
                      ...|.|.
T Consensus        75 ~~~v~v~   81 (204)
T 1sy6_A           75 PLQVYYR   81 (204)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            4555554

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.97  E-value=7e-10  Score=77.80  Aligned_cols=78  Identities=10%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee---eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR---SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~---~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +.+....+.+|.++.|.|.+.++.+.++.++|.|++..+..   +....+++|.+.  +.|.|.+++.+| | .|+|.|.
T Consensus       123 ~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~~-g-~Y~C~a~  198 (210)
T 3d9a_H          123 PLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVPSSTWPS-E-TVTCNVA  198 (210)
T ss_dssp             EECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE--EEEEEEGGGTTT-S-CCEEEEE
T ss_pred             EecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEE--EEEEEcHHHcCC-C-cEEEEEE
Confidence            33334456799999999999765222227999999875311   111123566553  679999999866 5 9999999


Q ss_pred             eccCC
Q psy9140          89 HKLTG   93 (114)
Q Consensus        89 n~l~~   93 (114)
                      |..+.
T Consensus       199 n~~~~  203 (210)
T 3d9a_H          199 HPASS  203 (210)
T ss_dssp             EGGGT
T ss_pred             eCCCC
Confidence            98764

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.96  E-value=2.6e-10  Score=80.53  Aligned_cols=80  Identities=16%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      .+.+.+.+..+.+|+.+.|.|.+.+..++.+.++|+||+..+...       ....++.|.+.  ..|.|..++.+|+| 
T Consensus       137 ~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g-  213 (237)
T 3sob_L          137 SVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEKHK-  213 (237)
T ss_dssp             EEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTTCC-
T ss_pred             ceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEE--EEEEEcHHHccCCC-
Confidence            344555555566799999999996643211289999999875310       11235566554  57999999999995 


Q ss_pred             eeEEEEeecc
Q psy9140          82 RYYCQTTHKL   91 (114)
Q Consensus        82 ~Y~C~a~n~l   91 (114)
                      .|+|.|.|..
T Consensus       214 ~Y~C~a~n~~  223 (237)
T 3sob_L          214 VYACEVTHQG  223 (237)
T ss_dssp             EEEEEEECTT
T ss_pred             cEEEEEeeCC
Confidence            9999999974

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.96  E-value=3.2e-10  Score=84.68  Aligned_cols=81  Identities=14%  Similarity=0.260  Sum_probs=55.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      +.+.+.....++|+.+.|.|.+.++..+.+.++|+||+..+...       ....++.|.+.  +.|.|.+++.+|+| .
T Consensus       222 v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g-~  298 (323)
T 2wqr_A          222 VYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF--SRLEVTRAEWEQKD-E  298 (323)
T ss_dssp             EEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEE--EEEEEEHHHHHHCC-C
T ss_pred             EEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEE--EEEEEChHHccCCC-E
Confidence            44444333334599999999996643332279999999865210       01224455543  57999999999995 9


Q ss_pred             eEEEEeeccCC
Q psy9140          83 YYCQTTHKLTG   93 (114)
Q Consensus        83 Y~C~a~n~l~~   93 (114)
                      |+|.|.|....
T Consensus       299 Y~C~a~n~~~~  309 (323)
T 2wqr_A          299 FICRAVHEAAS  309 (323)
T ss_dssp             EEEEEECTTST
T ss_pred             EEEEEEeCCCC
Confidence            99999997543

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.95  E-value=6.5e-09  Score=74.18  Aligned_cols=95  Identities=15%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeeee----eccCCcEEEcc-----CCcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARSI----IHSGGRYSITT-----AGALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~~----~~~~~r~~v~~-----~G~L~I~~v~   75 (114)
                      .+..|....+.+|.+|.|.|.+.+....  .+.|+|..  ..   ++...    ....+||.+..     +..|.|++++
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~s~~~~~--~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~   81 (194)
T 1lp9_E            4 VTQTEGLVTLTEGLPVMLNCTYQSTYSP--FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQ   81 (194)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSC--CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCC
T ss_pred             cEecCCEEEEecCCCEEEEEEeCCCCCc--eEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccC
Confidence            3445888899999999999998543222  68998853  21   22110    12268999852     3589999999


Q ss_pred             CCCCCeeeEEEEeecc--CCcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKL--TGERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l--~~~~~~s~~a~L~V~~  107 (114)
                      .+|+| .|.|.+.+..  .........++|.|+.
T Consensus        82 ~~Dsg-~Y~C~~~~~~~~~~~~~~g~gt~L~V~~  114 (194)
T 1lp9_E           82 LSDSA-LYYCALFLASSSFSKLVFGQGTSLSVVP  114 (194)
T ss_dssp             GGGCE-EEEEEEEECSSSSCEEEECCCEEEEEEC
T ss_pred             cccCe-eEEEEEecccCCcceeeeccCceEEecC
Confidence            99995 9999998731  1222334577888874

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.95  E-value=2.8e-10  Score=81.38  Aligned_cols=77  Identities=16%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |.+..+.+|+.+.|.|.+.++.++++.++|+||+..+...       ....++.|.+.  ..|.|..++.+|.||.|+|.
T Consensus       129 ~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~~g~YtC~  206 (240)
T 3q5y_A          129 PSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLS--SRLRVSATFWHNPRNHFRCQ  206 (240)
T ss_dssp             CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEE--EEEEEEHHHHSCTTCEEEEE
T ss_pred             CchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEE--EEEEECHHHhccCCCEEEEE
Confidence            3444556799999999997643332378999999875210       11224555553  46999999999966799999


Q ss_pred             EeeccC
Q psy9140          87 TTHKLT   92 (114)
Q Consensus        87 a~n~l~   92 (114)
                      |.|...
T Consensus       207 v~~~~~  212 (240)
T 3q5y_A          207 VQFHGL  212 (240)
T ss_dssp             EEECCB
T ss_pred             EEcCCC
Confidence            998743

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.95  E-value=3.3e-09  Score=77.27  Aligned_cols=95  Identities=21%  Similarity=0.325  Sum_probs=62.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeeee---------eccCCcEEEccCCc-----EEE
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARSI---------IHSGGRYSITTAGA-----LHI   71 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~~---------~~~~~r~~v~~~G~-----L~I   71 (114)
                      ..+|....+.+|++|.|.|.+.++..+...+.|+|..  .   .++...         ....+||.+..++.     |.|
T Consensus        27 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  106 (256)
T 3sob_H           27 LVESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQM  106 (256)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEE
Confidence            3455667899999999999985432121278999742  1   111100         01247999865443     999


Q ss_pred             eecCCCCCCeeeEEEEeecc--------CCcEEeCCCeEEEEe
Q psy9140          72 RDTGMEDSYIRYYCQTTHKL--------TGERKISPPSQVMVS  106 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~l--------~~~~~~s~~a~L~V~  106 (114)
                      ++++.+|+| .|.|.+.+.-        ......+..+.|.|.
T Consensus       107 ~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~  148 (256)
T 3sob_H          107 NSLRAEDTA-VYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVS  148 (256)
T ss_dssp             CSCCGGGCE-EEEEEEESSCTTCSSCCTTSEEEECCCEEEEEC
T ss_pred             CCCCcccCE-EEEEEEecCCCccccccccceeEECCCEEEEEe
Confidence            999999995 9999998742        012234557788886

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.95  E-value=1.1e-10  Score=84.44  Aligned_cols=80  Identities=19%  Similarity=0.315  Sum_probs=53.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      .+.+.+.+..+.+|+++.|.|.+.++.++++.++|+||+..+...       ....++.|.+.  ..|.|.+++.+|+| 
T Consensus       152 ~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g-  228 (252)
T 3bkj_L          152 TVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERHN-  228 (252)
T ss_dssp             EEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHHHCC-
T ss_pred             EEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEE--EEEEEcchhccCCC-
Confidence            344444444456899999999996643222279999999864211       00123344332  45999999999995 


Q ss_pred             eeEEEEeecc
Q psy9140          82 RYYCQTTHKL   91 (114)
Q Consensus        82 ~Y~C~a~n~l   91 (114)
                      .|+|.|.|..
T Consensus       229 ~Y~C~a~n~~  238 (252)
T 3bkj_L          229 SYTCEATHKT  238 (252)
T ss_dssp             EEEEEEECTT
T ss_pred             eEEEEEEeCC
Confidence            9999999963

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.95  E-value=3.2e-09  Score=75.91  Aligned_cols=94  Identities=20%  Similarity=0.311  Sum_probs=60.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeCCe--e---eeeee-----------eccCCcEEEccCC-----c
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLREGV--S---EARSI-----------IHSGGRYSITTAG-----A   68 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd~~--~---~~~~~-----------~~~~~r~~v~~~G-----~   68 (114)
                      .+|....+.+|.+|.|.|.+.+... ... .|.|+|...  .   ++...           ....+||.+..++     .
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   84 (232)
T 3qhz_H            5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVV   84 (232)
T ss_dssp             EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEE
T ss_pred             EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEE
Confidence            3566678999999999999854321 122 459998421  1   11000           0113699887443     5


Q ss_pred             EEEeecCCCCCCeeeEEEEeeccCC-----cEEeCCCeEEEEe
Q psy9140          69 LHIRDTGMEDSYIRYYCQTTHKLTG-----ERKISPPSQVMVS  106 (114)
Q Consensus        69 L~I~~v~~~D~gg~Y~C~a~n~l~~-----~~~~s~~a~L~V~  106 (114)
                      |.|++++.+|+| .|.|.+.|..++     ....+..+.|.|.
T Consensus        85 L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~  126 (232)
T 3qhz_H           85 LTMTNMDPVDTA-TYYCARTLRVSGDYVRDFDLWGRGTLVTVS  126 (232)
T ss_dssp             EEECSCCGGGCE-EEEEEEECCC---CCCCCCEECCCEEEEEC
T ss_pred             EEECcCChhhCE-EEEEEEeeccCccccccceeeCCCeEEEEe
Confidence            999999999995 999999975211     0124556778876

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=98.95  E-value=4.6e-09  Score=69.60  Aligned_cols=97  Identities=21%  Similarity=0.277  Sum_probs=61.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeee---e--------eccCCcEEEcc---CC--cEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARS---I--------IHSGGRYSITT---AG--ALH   70 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~---~--------~~~~~r~~v~~---~G--~L~   70 (114)
                      .+|....+.+|.+|.|.|...+.......+.|+|..  .   .|+..   .        ....+||.+..   ++  .|.
T Consensus         5 ~q~~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~   84 (124)
T 1dlf_H            5 EESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQ   84 (124)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EccCCEEEcCCCCEEEEeECCCccCCCCeEEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcCCCCEEEEE
Confidence            345677899999999999984321111279998843  1   12211   0        01247998863   22  699


Q ss_pred             EeecCCCCCCeeeEEEEeecc-CCcEEeCCCeEEEEeccc
Q psy9140          71 IRDTGMEDSYIRYYCQTTHKL-TGERKISPPSQVMVSEIA  109 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~l-~~~~~~s~~a~L~V~~~~  109 (114)
                      |++++.+|+| .|.|.+.+.. .....-...++|.|...+
T Consensus        85 I~~~~~~Dsg-~Y~C~~~~~~~~~~~~fg~GT~L~V~~~~  123 (124)
T 1dlf_H           85 MNTLRAEDTG-IYYCTGIYYHYPWFAYWGQGTLVTVSAEP  123 (124)
T ss_dssp             ECSCCGGGCE-EEEEEEEBTTBSSCCCCCCCEEEEEC---
T ss_pred             ECCCCHHHCE-EEEEEEEeCCCcccceECCCEEEEEecCC
Confidence            9999999995 9999998741 112123457789987653

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.94  E-value=2.1e-10  Score=85.61  Aligned_cols=78  Identities=12%  Similarity=0.204  Sum_probs=54.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCC-CCc-ceEEEeeCCeeeeeee-----eccCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYN-HNL-LLIAWLREGVSEARSI-----IHSGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~-~~~-~~vsW~kd~~~~~~~~-----~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      ...|....+.+|.+|.|.|.+.++. .+. ..++|+|++...+...     ...+++|.  .++.|.|.+++.+|+| .|
T Consensus       117 ~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~--~~~~L~I~~~~~~D~G-~Y  193 (323)
T 2wqr_A          117 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT--VTSTLPVGTRDWIEGE-TY  193 (323)
T ss_dssp             ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE--EEEEEECCHHHHHTTC-CE
T ss_pred             EcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE--EEEEEEECHHHccCCC-CE
Confidence            3445555678999999999986543 221 2799999764322100     12345665  3568999999999995 99


Q ss_pred             EEEEeecc
Q psy9140          84 YCQTTHKL   91 (114)
Q Consensus        84 ~C~a~n~l   91 (114)
                      +|.|.|..
T Consensus       194 ~C~a~n~~  201 (323)
T 2wqr_A          194 QCRVTHPH  201 (323)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            99999975

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.92  E-value=7.7e-10  Score=79.32  Aligned_cols=73  Identities=12%  Similarity=0.281  Sum_probs=46.8

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeee---eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~---~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      ..+.+|..+.|.|.+.++.+.++.++|.|++..+-   .+....+++|.+  ++.|.|.+++.+| | .|+|.|.|...+
T Consensus       131 ~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-g-~Y~C~a~n~~~~  206 (227)
T 1mju_H          131 CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVTSSTWPS-Q-SITCNVAHPASS  206 (227)
T ss_dssp             C------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE--EEEEEECTTTTTT-S-CCEEEEEEGGGT
T ss_pred             ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEE--EEEEEEchhhcCC-C-eEEEEEEECCCC
Confidence            45678999999999976422222899999987531   111112266655  3689999999977 6 999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.8
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.79
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.76
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.76
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.75
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.74
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.73
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.73
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.71
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.71
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.71
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.7
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.7
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.69
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.69
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.69
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.69
d2avga1	110	Cardiac myosin binding protein C, different domain	99.69
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.68
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.68
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.67
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.67
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.66
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.65
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.65
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.65
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.64
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.63
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.62
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.62
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.61
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.61
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.59
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.58
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.56
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.56
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.56
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.55
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.54
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.54
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.53
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.52
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.49
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.48
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.47
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.42
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.4
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.4
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.38
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.37
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.34
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.32
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.31
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	99.2
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	99.14
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	99.12
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	99.07
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.03
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	99.01
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.96
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.96
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.93
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.91
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.9
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.9
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.88
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.86
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.86
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.84
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.84
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.84
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.83
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.83
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.83
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.82
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.82
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.82
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.81
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.8
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.79
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.79
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.78
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.78
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.76
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.76
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.76
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.76
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.75
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.75
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.75
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.74
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.74
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.73
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.73
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.72
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.71
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.71
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.7
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.7
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.69
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.69
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.67
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.67
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.67
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.66
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.65
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.64
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.64
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.64
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.63
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.63
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.62
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.62
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.6
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.58
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.57
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.56
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.54
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.54
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.53
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.52
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.51
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.51
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.5
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.5
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.49
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.48
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.46
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.44
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.44
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.4
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.4
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.39
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.39
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.38
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.35
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.33
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.31
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.3
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.3
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.27
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.27
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.25
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.23
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.23
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.22
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.22
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.22
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.2
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	98.19
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.19
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.18
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.16
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.15
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	98.15
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.15
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.14
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.13
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.12
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.11
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.11
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.1
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.09
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.09
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	98.08
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.07
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.07
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.07
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.04
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.03
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.02
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.99
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.99
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.99
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.92
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.91
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.9
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.88
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.84
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.77
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.74
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.72
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.7
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.65
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.64
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.61
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	97.55
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.52
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.51
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.41
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.4
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.36
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.34
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.3
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.25
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.15
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.14
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.1
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	97.06
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.04
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.0
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.95
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.95
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.94
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.94
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.9
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.9
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.89
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.89
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.89
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.88
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.86
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.83
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.82
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.82
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.79
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.77
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.74
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.73
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.73
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.73
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.72
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.69
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.67
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.64
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.62
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.6
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.52
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.38
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.2
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.06
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	95.64
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.38
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.46
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	90.39
d2oz4a1	84	Intercellular cell adhesion molecule-1 (ICAM-1) {H	89.72
d1iama2	82	Intercellular adhesion molecule-1, ICAM-1 {Human (	87.08
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	86.53
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	86.16
d2j88h1	68	Immunoglobulin heavy chain gamma constant domain 1	86.14

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=4.6e-20  Score=116.74  Aligned_cols=88  Identities=22%  Similarity=0.309  Sum_probs=75.1

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .|.|...|+|..+.+|+++.|.|.+.+.+.+  .++|+||+..+     ..+.||.+. ++.|.|.+++.+|+| .|+|.
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p--~v~W~k~g~~i-----~~~~~~~~~-~~~L~i~~v~~~D~G-~Y~C~   71 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRP--AVRWLRDGQPL-----ASQNRIEVS-GGELRFSKLVLEDSG-MYQCV   71 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCC--EEEEEETTEEC-----CCCSSEEEE-TTEEEESSCCGGGCE-EEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCC--EEEEEEeeccc-----cccceeeee-eeeEEEEeecccCCE-EEEEE
Confidence            3679999999999999999999999776554  89999999854     456788775 789999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEe
Q psy9140          87 TTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |.|..+.   .+..++|.|+
T Consensus        72 a~N~~G~---~~~~~~l~V~   88 (89)
T d1cs6a4          72 AENKHGT---VYASAELTVQ   88 (89)
T ss_dssp             EEETTEE---EEEEEEEEEE
T ss_pred             EEeCCCE---EEEEEEEEEE
Confidence            9999763   4557899886

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=8.2e-20  Score=116.47  Aligned_cols=92  Identities=15%  Similarity=0.207  Sum_probs=76.8

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      .|.|...|++..+.+|.+|.|.|.+.+.+.+  .++|+||+..|     ..+.||.+..+|   .|.|.+++.+|+| .|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p--~v~W~~~~~~l-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y   72 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPP--VVTWHKDDREL-----KQSVKYMKRYNGNDYGLTINRVKGDDKG-EY   72 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCC--EEEEEETTEEC-----CSBTTBBCCCSTTEEEEEESCCCSGGGS-CE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCC--EEEEEEeeecc-----ceeeEEEEEecCCeeEEEeCCCceecCE-EE
Confidence            3789999999999999999999999876544  89999999854     456788776555   5999999999996 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|.|.|..+.   .+..++|.|.+..
T Consensus        73 ~C~a~N~~G~---~~~~~~l~V~~~~   95 (97)
T d1koaa1          73 TVRAKNSYGT---KEEIVFLNVTRHS   95 (97)
T ss_dssp             EEEEEETTEE---EEEEECCEEECSC
T ss_pred             EEEEEECCCE---EEEEEEEEEeecC
Confidence            9999998764   4567889888654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.76  E-value=8.4e-19  Score=110.80  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |.|..+|++..+.+|++|.|.|.+.+.+.+. .+.|+||+..+    ...+.++.. ..+|.|.|.+++.+|+| .|+|.
T Consensus         3 P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~-~v~W~~~g~~l----~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~   76 (94)
T d1biha1           3 PVLKDQPAEVLFRENNPTVLECIIEGNDQGV-KYSWKKDGKSY----NWQEHNAALRKDEGSLVFLRPQASDEG-HYQCF   76 (94)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSSC-EEEEEESSSBC----CTTTTTEEECTTSCCEEESSCCGGGCE-EEEEE
T ss_pred             CEEEecCCcEEEeCCCeEEEEEEecCCCCee-EEEEEeeeeee----eeecceeeecccceEEEEeccChhcCe-EEEEE
Confidence            5688999999999999999999997764432 79999999864    122334433 45789999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEE
Q psy9140          87 TTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V  105 (114)
                      |.|..+..  .|....|..
T Consensus        77 a~N~~G~~--~s~~v~l~~   93 (94)
T d1biha1          77 AETPAGVA--SSRVISFRK   93 (94)
T ss_dssp             EEETTEEE--ECCCEEEEE
T ss_pred             EEeCCCEE--EEEEEEEEE
Confidence            99997642  455555543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.76  E-value=1e-18  Score=112.21  Aligned_cols=91  Identities=15%  Similarity=0.383  Sum_probs=74.9

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc--cC--CcEEEeecCCCCCCe
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT--TA--GALHIRDTGMEDSYI   81 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~--~~--G~L~I~~v~~~D~gg   81 (114)
                      +.|.|...|+|..+.+|+++.|.|.+.+.+.+  .+.|+||+..|     ..+.||.+.  .+  ..|.|.+++.+|+| 
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p--~v~W~k~~~~i-----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-   78 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDA-   78 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEEC-----CCSSSEEEEECTTCEEEEEESSCCGGGCE-
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCC--eEEEEeeeccc-----cceeeEeEEEecCceeeeEecCCCHHhCE-
Confidence            56789999999999999999999999776544  89999999864     456777764  23  35999999999995 


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|+|.|.|..+.   .+..++|.|+.
T Consensus        79 ~Y~C~a~N~~G~---~~~~~~L~V~s  101 (102)
T d1fhga_          79 KYTCKAVNSLGE---ATCTAELLVET  101 (102)
T ss_dssp             EEEEEEEETTEE---EEEEEEEEEEC
T ss_pred             EEEEEEEECCcE---EEEEEEEEEEE
Confidence            999999999864   46678898864

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=9.6e-19  Score=111.60  Aligned_cols=93  Identities=17%  Similarity=0.132  Sum_probs=75.0

Q ss_pred             eccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-c-cCC--cEEEeecCCCCC
Q psy9140           4 GDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-T-TAG--ALHIRDTGMEDS   79 (114)
Q Consensus         4 avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~-~~G--~L~I~~v~~~D~   79 (114)
                      |+-.|.|...+++..+.+|+.|.|.|.+.+.+.+  .++|+||+..|     ..+.|+.+ . .+|  .|.|.+++.+|+
T Consensus         1 s~eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p--~v~W~k~~~~i-----~~~~~~~~~~~~~~~~~L~I~~~~~~D~   73 (98)
T d1g1ca_           1 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKI-----ERSDRIYWYWPEDNVCELVIRDVTGEDS   73 (98)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC--EEEEEETTEEC-----CCCSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCcCCeEecCCCcEEEcCCCcEEEEEEEEEecCC--eEEEEeCceEE-----eeeeeeEEEeccceEEEEEeccCccccC
Confidence            3556889999999999999999999999776544  89999999864     34455443 3 234  699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      | .|+|.|.|..+.   .+..++|.|+.
T Consensus        74 G-~Y~c~a~N~~G~---~~~~~~L~V~~   97 (98)
T d1g1ca_          74 A-SIMVKAINIAGE---TSSHAFLLVQA   97 (98)
T ss_dssp             E-EEEEEEEETTEE---EEEEEEEEEEC
T ss_pred             E-EEEEEEEECCcE---EEEEEEEEEEE
Confidence            5 999999998764   56689999875

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.3e-18  Score=109.72  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=75.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc--CC-cEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT--AG-ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~--~G-~L~I~~v~~~D~gg~Y~   84 (114)
                      |.|...|++..+.+|+++.|.|.+.+.+.+  .+.|+||+..+     ..++||.+..  ++ .|.|.+++.+|+| .|+
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p--~v~W~k~~~~l-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~   72 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQI-----QESEHMKVENSENGSKLTILAARQEHCG-CYT   72 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSC--EEEEEESSSBC-----CCSSSEEEEECSSEEEEEETTCCTTTCE-EEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCC--EEEEEeCceee-----ccCCcEEEEEecceeEEEEeeCCcccCE-EEE
Confidence            467778999999999999999999776544  89999999854     5667777643  33 5999999999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                      |.|.|..+.   .+..++|.|.+++.
T Consensus        73 C~a~N~~G~---~~~~~~l~V~~~P~   95 (101)
T d2cqva1          73 LLVENKLGS---RQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEEECSSCE---EECCEEEEEECSCS
T ss_pred             EEEEECCCE---EEEEEEEEEEecCC
Confidence            999999864   57789999997553

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=9.8e-19  Score=110.83  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=68.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      -|...|+++.+.+|+++.|.|.+.+.+.|  .++|+|++..+   ......++.+.++|.|.|.+++.+|+| .|+|.|.
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p~p--~v~W~~~~~~i---~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~   76 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDV---ILKKDVRFIVLSNNYLQIRGIKKTDEG-TYRCEGR   76 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSSCC--EEEEEETTEEG---GGGCCTTEEECTTSCEEETTCCGGGCE-EEEEEEE
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecCCC--eEEEEEcCccc---ccccceeeeeeeeeeEEECCCCHHhCE-EEEEEEE
Confidence            48889999999999999999999876554  89999999875   334567888888999999999999995 9999999


Q ss_pred             eccCCc
Q psy9140          89 HKLTGE   94 (114)
Q Consensus        89 n~l~~~   94 (114)
                      |..+++
T Consensus        77 n~~~~~   82 (92)
T d1epfa2          77 ILARGE   82 (92)
T ss_dssp             EGGGTE
T ss_pred             ECcCCE
Confidence            976553

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=5.4e-19  Score=111.55  Aligned_cols=87  Identities=15%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc---cCCcEEEeecCCCCCCeeeEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT---TAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~---~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |...|++..+.+|++|.|.|.+.+++.|  .+.|+||+..+     ..+.|+.+.   .++.|.|.+++.+|+| .|+|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p--~v~W~~~g~~l-----~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~   73 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVP--TVTWLRKGQVL-----STSARHQVTTTKYKSTFEISSVQASDEG-NYSVV   73 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCC--CCEEESSSSTT-----CSSSSCEEEECSSEEEEECSSCCSCCCE-EEEEE
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCC--eEEEEEeeccc-----ccccceeeeeecceeEEeecCCCHHHCE-EEEEE
Confidence            5678999999999999999999887655  79999999854     345565553   3568999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEec
Q psy9140          87 TTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|..+.   .+..++|.|++
T Consensus        74 a~N~~G~---~~~~~~l~V~e   91 (91)
T d1tnna_          74 VENSEGK---QEAEFTLTIQK   91 (91)
T ss_dssp             CBCSSCB---CCEEEEEECCC
T ss_pred             EEECCCE---EEEEEEEEEEC
Confidence            9999864   45578888864

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=3.5e-18  Score=110.72  Aligned_cols=94  Identities=23%  Similarity=0.335  Sum_probs=70.7

Q ss_pred             cceeeccce-eEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           8 SDYEINTGN-TFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         8 ~~~~v~~~d-~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      ++|..+|.+ ..|.+|++|+|.|.+ .+.+.+  .++|+||+..+.  ......++....+|.|.|.+++.+|+| .|+|
T Consensus         4 ~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~--~v~W~k~g~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   78 (105)
T d1cs6a2           4 QEFSAEERDPVKITEGWGVMFTCSPPPHYPAL--SYRWLLNEFPNF--IPADGRRFVSQTTGNLYIAKTEASDLG-NYSC   78 (105)
T ss_dssp             CCCCSSCCCCEEEETTSCEEECCCCCSEESCC--EEEEEESSTTCB--CCCCSSEEECTTTCCEEESSCCGGGCE-EEEE
T ss_pred             CcccCCCCCCEEEeCCCeEEEEEEccCCCCCC--EEEEEEeecccc--ccccceeeeecCCCEEeecccccccCc-EEEE
Confidence            578877766 589999999999997 343333  899999988652  122344566678999999999999995 9999


Q ss_pred             EEeeccCCcEE--eCCCeEEEEe
Q psy9140          86 QTTHKLTGERK--ISPPSQVMVS  106 (114)
Q Consensus        86 ~a~n~l~~~~~--~s~~a~L~V~  106 (114)
                      .|.|..+..++  .+..++|.|.
T Consensus        79 ~a~N~~g~~~~~v~~~~~~l~v~  101 (105)
T d1cs6a2          79 FATSHIDFITKSVFSKFSQLSLA  101 (105)
T ss_dssp             EEEEEETTEEEEEECCCEEEEEE
T ss_pred             EEEECCCCEEEEEEeccEEEEEc
Confidence            99998875432  2556777664

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.73  E-value=2.7e-18  Score=108.32  Aligned_cols=86  Identities=22%  Similarity=0.355  Sum_probs=69.8

Q ss_pred             ccceeecccee-EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           7 SSDYEINTGNT-FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         7 ~~~~~v~~~d~-~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      .|.|...|++. .|.+|+++.|.|.+.+.++|  .++|+||+..+      .++|+.+. ++.|.|.+++.+|+| .|+|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p--~v~W~~~~~~i------~~~~~~~~-~~~L~i~~v~~~d~G-~Y~C   71 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP--NVVWSHNAKPL------SGGRATVT-DSGLVIKGVKNGDKG-YYGC   71 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCC--CCEEEETTEEC------CSSSEEEE-TTEEEESSCCSTTCE-EEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCC--EEEEEeCCccC------ccccEEEe-eeeEEECCCChhhCE-EEEE
Confidence            36788888765 67889999999999776555  78999999864      46788886 567999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEE
Q psy9140          86 QTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|.|.++.   .+..+.|.|
T Consensus        72 ~a~N~~G~---~~~~~~l~V   88 (89)
T d1biha4          72 RATNEHGD---KYFETLVQV   88 (89)
T ss_dssp             EEEETTEE---EEEEEEEEE
T ss_pred             EEEECCCE---EEEEEEEEE
Confidence            99999864   344667766

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=3.4e-18  Score=107.95  Aligned_cols=86  Identities=17%  Similarity=0.379  Sum_probs=67.6

Q ss_pred             ccceeec-cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEE
Q psy9140           7 SSDYEIN-TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         7 ~~~~~v~-~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      .|.+.+. |++..+.+|+++.|.|.+.+.+.+  .++|+|++...       ..++ ...++.|.|.+++.+|+| .|+|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p--~i~W~k~~~~~-------~~~~-~~~~~~L~I~~v~~~D~G-~Y~C   72 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVP--QIKWRKLDGSQ-------TSKW-LSSEPLLHIQNVDFEDEG-TYEC   72 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCC--EEEEEECCSCC-------SCCC-SBSSSEEEECSCCGGGCE-EEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCC--EEEEEeccccc-------ceEe-eeeeeEEEeCCCCccCCE-EEEE
Confidence            3566665 799999999999999999876554  89999987632       1222 345789999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEe
Q psy9140          86 QTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.|.++.   .+..++|.|.
T Consensus        73 ~a~N~~G~---~~~~~~l~V~   90 (91)
T d1cs6a3          73 EAENIKGR---DTYQGRIIIH   90 (91)
T ss_dssp             EEEETTEE---EEEEEEEEEE
T ss_pred             EEEECCCE---EEEEEEEEEE
Confidence            99999864   4556788775

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=108.48  Aligned_cols=97  Identities=14%  Similarity=0.069  Sum_probs=72.8

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEcc---------CCcEEEeecCCCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITT---------AGALHIRDTGMEDS   79 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~---------~G~L~I~~v~~~D~   79 (114)
                      |...|++..|.+|.+|.|.|.+.+.+.... .|.|+|++...+  ......++.+..         ...|.|.+++.+|+
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDL--ASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   80 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCH--HHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeecccc--ccccceeeeeccceeeEeecCEEEEEEccCCHHHC
Confidence            788999999999999999999976542212 899999976432  122334443321         13599999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      | .|+|.|.|..+.   .+..++|.|.+++...
T Consensus        81 G-~Y~C~a~N~~G~---~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          81 G-NYRCEVTYKDKF---DSCSFDLEVHESTGTT  109 (113)
T ss_dssp             E-EEEEEEECSSCE---EEECCEEEEECCCCSC
T ss_pred             e-EEEEEEEeCCCE---EEEEEEEEEEcCCCcC
Confidence            5 999999998764   5668999999887653

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.3e-17  Score=103.44  Aligned_cols=84  Identities=23%  Similarity=0.402  Sum_probs=66.2

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--cc---CCcEEEeecCCCCCCeeeEEEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--TT---AGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~~---~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      .|.+..|.+|++|.|.|.+.+.+.+  .+.|.||+..+     ..+.++.+  ..   .+.|.|.+++.+|+| .|+|.|
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p--~v~W~k~g~~l-----~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a   73 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEP--DIQWVKDGAVV-----QNLDQLYIPVSEQHWIGFLSLKSVERSDAG-RYWCQV   73 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSC--CEEEEETTEEC-----CSSEEEEEEEETTEEEEEEEESSCCGGGCE-EEEEEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCc--eEEEEEeeccc-----ccceeeeeeecccCceeeEEECCCCcccCE-EEEEEE
Confidence            5899999999999999999776544  89999999864     23333333  22   246999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|..+.  ..|..++|.|+
T Consensus        74 ~N~~G~--~~S~~~~l~V~   90 (91)
T d1rhfa1          74 EDGGET--EISQPVWLTVE   90 (91)
T ss_dssp             SSCTTC--EECCCEEEEEE
T ss_pred             EECCCC--EEEEEEEEEEE
Confidence            998764  36778999986

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.71  E-value=4.2e-18  Score=107.64  Aligned_cols=90  Identities=10%  Similarity=0.092  Sum_probs=73.1

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCee
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIR   82 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~   82 (114)
                      |.|.|...+++..+.+|+++.|.|.+.+.+.|  .++|+||+..+     ..+.|+.+..   ++.|.|.+++.+|+| .
T Consensus         1 l~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p--~v~W~~~~~~i-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~   72 (93)
T d1wiua_           1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGA-----ALAPELLVDAKSSTTSIFFPSAKRADSG-N   72 (93)
T ss_dssp             CCCEECCCCCEEEECSSBCCEEEEEEECCSSC--EEEEECSSSSC-----BCSTTSEEEEETTEEEEECTTBCGGGCE-E
T ss_pred             CCCeEEeCCCcEEEeCCCeEEEEEEEEEecCC--eEEEEeeeeec-----eeeeeeeecccccceeeccccccccccE-E
Confidence            45778889999999999999999999887655  89999999854     4556666543   337999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+|.|.|..+.   .+..++|.|+
T Consensus        73 Y~c~a~N~~G~---~~~~~~l~V~   93 (93)
T d1wiua_          73 YKLKVKNELGE---DEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEETTEE---EEEEEEEEEC
T ss_pred             EEEEEEECCCE---EEEEEEEEEC
Confidence            99999999864   4567777774

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.1e-19  Score=111.50  Aligned_cols=89  Identities=12%  Similarity=0.171  Sum_probs=70.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.|.+.+++..+.+|+.+.|.|.+.+.+.|  .++|+|++..+.    ....++....++.|.|.+++.+|.|+.|+|.|
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a   76 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLE--QAGWILTELEQS----ATVMKSGGLPSLGLTLANVTSDLNRKNVTCWA   76 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEEECSSCC--CCCEEESCCCSS----EEECCCCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeeccCCCCc--EEEEEECCceee----eeeeeeeeccceeEEEccccccccceEEEEEE
Confidence            678999999999999999999999886555  799999987642    22334444556789999999999975799999


Q ss_pred             eeccCCcEEeCCCeEEEE
Q psy9140          88 THKLTGERKISPPSQVMV  105 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V  105 (114)
                      .|.++.   .+..++|.|
T Consensus        77 ~N~~G~---~~~s~~l~V   91 (92)
T d2ifga1          77 ENDVGR---AEVSVQVNV   91 (92)
T ss_dssp             EETTEE---CCEEECCCC
T ss_pred             EcCCCE---EEEEEEEEE
Confidence            999864   344555554

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-17  Score=106.22  Aligned_cols=90  Identities=16%  Similarity=0.101  Sum_probs=64.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEcc---CCcEEEeecCCCCCCeee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITT---AGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~---~G~L~I~~v~~~D~gg~Y   83 (114)
                      |.|. +++|..|.+|++|.|+|.+.+.+.|.. .+.|.+++..+     ....++.+..   .+.|.|.+|+.+|+| .|
T Consensus         3 P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y   75 (96)
T d2c9aa1           3 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA-----PLKEIKVTSSRRFIASFNVVNTTKRDAG-KY   75 (96)
T ss_dssp             CEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCC-----CEEEEEEEETTEEEEEEEECSCCGGGCS-EE
T ss_pred             Ceec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeee-----cCCceeEEEeecCceEEEECCCCHHHCe-EE
Confidence            5674 799999999999999999987665533 23333333321     1222222322   357999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEe
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|.|.|..+..  .|+.|.|.|+
T Consensus        76 ~C~a~N~~G~~--~s~~a~L~Vk   96 (96)
T d2c9aa1          76 RCMIRTEGGVG--ISNYAELVVK   96 (96)
T ss_dssp             EEEEEETTEEE--EEEEEEEEEC
T ss_pred             EEEEEeCCCeE--EEEEEEEEEC
Confidence            99999987642  5667999986

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=105.79  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .|.+++.+++..+.+|+++.|.|.+.+.+.+. .++|+||+..+     ..+.|+....++.|.|.+|+.+|+| .|+|.
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~-~i~W~k~~~~l-----~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~   78 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNA-TVHWVLRKPAA-----GSHPSRWAGMGRRLLLRSVQLHDSG-NYSCY   78 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCS-EEEEEEECSSS-----SCCCEEEEEESSEEEECSCCGGGCE-EEEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCc-eEEEEEccccc-----cceeeEEecCCCEEEECCCChhcCE-EEEEE
Confidence            36789999999999999999999997643322 89999999854     3456777777899999999999995 99999


Q ss_pred             EeeccC
Q psy9140          87 TTHKLT   92 (114)
Q Consensus        87 a~n~l~   92 (114)
                      |.|...
T Consensus        79 a~n~~~   84 (93)
T d1n26a1          79 RAGRPA   84 (93)
T ss_dssp             SSSSCS
T ss_pred             ECCccc
Confidence            998643

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.6e-17  Score=103.88  Aligned_cols=94  Identities=15%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC-----cEEEeecCCCCCCee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG-----ALHIRDTGMEDSYIR   82 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G-----~L~I~~v~~~D~gg~   82 (114)
                      |-|...+++..|.+|+++.|.|.+.+.+..+ .++|+|+++.+..  .....+....+++     .|+|.+++.+|+| .
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P-~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~   79 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRP-HVTWCKLNGTTCV--KLEDRQTSWKEEKNISFFILHFEPVLPNDNG-S   79 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCC-EEEEEEECSSCEE--ECCSSCEEEEECSSCEEEEEEESSCCGGGCE-E
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCC-EEEEEecCccccc--ccceeeeeEEecCCceEEEEEEccccHHHCC-e
Confidence            5577889999999999999999998765322 8999999886532  1222222222222     3999999999995 9


Q ss_pred             eEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          83 YYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        83 Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |+|.|.|..+.  ..|..+.|.|.|
T Consensus        80 Y~C~A~N~~G~--~~s~~~~l~V~e  102 (104)
T d2aw2a1          80 YRCSANFQSNL--IESHSTTLYVTD  102 (104)
T ss_dssp             EEEEEEETTEE--EECCCEEEEEEC
T ss_pred             EEEEEEcCCCe--EEEEEEEEEEEE
Confidence            99999998653  245689999976

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=8.7e-17  Score=101.95  Aligned_cols=88  Identities=19%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc-CCcEEEeecCCCCCCeeeEEEEee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT-AGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~-~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      .+++.+..|.+|++++|.|.+.+.  + ..+.|+|++..+     ..+.|+.+.. ++.|.|.+++.+|+| .|+|.|.|
T Consensus         7 ~i~~~~~~v~~g~~v~l~C~~~~~--~-~~v~W~~~~~~l-----~~~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~N   77 (96)
T d1l6za2           7 FLQVTNTTVKELDSVTLTCLSNDI--G-ANIQWLFNSQSL-----QLTERMTLSQNNSILRIDPIKREDAG-EYQCEISN   77 (96)
T ss_dssp             CEECSCSEECTTSCEEEEECCCCS--S-CEEEEEETTEEC-----CCCTTEEEETTTTEEEECSCCGGGCE-EEEEEEES
T ss_pred             eEEcCceEEeCCCeEEEEEccCCC--C-CCEEEEEeeeec-----ccccceeccCCceEEEEeccchhhce-EEEEEEEe
Confidence            356889999999999999998542  2 278999999854     4567777754 568999999999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEEeccc
Q psy9140          90 KLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~~  109 (114)
                      ..+.  ..|..++|.|..++
T Consensus        78 ~~g~--~~S~~~~L~V~~~P   95 (96)
T d1l6za2          78 PVSV--RRSNSIKLDIIFDP   95 (96)
T ss_dssp             SSCC--EECCCCEEEECCSC
T ss_pred             CCCC--eEEEeEEEEEEcCC
Confidence            8764  35778999998765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.3e-17  Score=102.88  Aligned_cols=95  Identities=20%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-eeeccCCcEEEccCC---cEEEeecCC-CCCCe
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-SIIHSGGRYSITTAG---ALHIRDTGM-EDSYI   81 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-~~~~~~~r~~v~~~G---~L~I~~v~~-~D~gg   81 (114)
                      .|.|...+++..+.+|+.|.|.|.+.+.+++. .++|+|++..+.. .....+.||.+..++   .|.|.+++. +|+ |
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~-G   79 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVT-DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP-G   79 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCC-EEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS-E
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCee-EEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC-E
Confidence            35688899999999999999999998764332 7999997654321 122346788876544   799999985 688 5


Q ss_pred             eeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          82 RYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        82 ~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|+|.|.|.++.   .+..+.|.|+
T Consensus        80 ~Y~C~A~N~~G~---~~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGS---DQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEE---EEEEEEEEEC
T ss_pred             EEEEEEEECCCE---EEEEEEEEEC
Confidence            999999999864   4557788875

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.7e-17  Score=105.00  Aligned_cols=95  Identities=14%  Similarity=0.150  Sum_probs=70.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEcc---------CCcEEEeecCCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITT---------AGALHIRDTGME   77 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~---------~G~L~I~~v~~~   77 (114)
                      +.|...|++..+.+|++|.|.|.+.+.+.... .|.|+|++..++.  .....++.+..         .+.|.|.+|+.+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS--SKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCST--TTCSSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeec--ccCCceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            35889999999999999999999966542112 7999998864321  12223333321         246999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |+| .|+|.|.|..+.   .+..++|.|+++
T Consensus        83 D~G-~Y~C~a~N~~G~---~~~~~~L~V~~~  109 (110)
T d2avga1          83 FTG-GYRCEVSTKDKF---DCSNFNLTVHEA  109 (110)
T ss_dssp             CCE-EEEEEEEETTEE---EEEEEEEEEESC
T ss_pred             HCc-EEEEEEEECCCe---EEEEEEEEEEec
Confidence            995 999999998754   577899999886

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.68  E-value=2e-17  Score=105.14  Aligned_cols=89  Identities=17%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             cceeeccceeEEEeC---CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           8 SDYEINTGNTFVLRG---NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G---~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      |.|..+|++..+.+|   ++++|+|.+.+.+.+  .+.|+||+..+   ....+.++....+..|.|.+++.+|+| .|+
T Consensus         5 P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p--~v~W~~ng~~i---~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~   78 (97)
T d1cs6a1           5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA--TYRWKMNGTEL---KMGPDSRYRLVAGDLVISNPVKAKDAG-SYQ   78 (97)
T ss_dssp             EEEEECCCCEEEETTCSCCEEEECCEEEEESCC--EEEEEETTEEC---CCSTTSSEEEETTEEEEESCCHHHHCE-EEE
T ss_pred             CEEEEeCCCEEEECccCCCeEEEEEEEEEeCCC--EEEEEEeeeec---cCCCCceEEeeeeeEEEEecccccCCE-EEE
Confidence            668999999998887   689999999776544  89999999875   233456666665557888889999995 999


Q ss_pred             EEEeeccCCcEEeCCCeEEE
Q psy9140          85 CQTTHKLTGERKISPPSQVM  104 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~  104 (114)
                      |+|.|.++.  ..|..|+|.
T Consensus        79 C~a~N~~G~--~~S~~a~L~   96 (97)
T d1cs6a1          79 CVATNARGT--VVSREASLR   96 (97)
T ss_dssp             EEEEETTEE--EECCCEEEE
T ss_pred             EEEEECCCE--EEEEEEEEe
Confidence            999999864  256688875

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=100.21  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.|..+|+|..+.+|.++.|.|.+.+.+.|. .++|+||+..+     ...      ..+.+.|..+..+|+ |.|+|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~-~i~W~k~g~~i-----~~~------~~~~~~l~~~~~~d~-G~Y~C~A   68 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV-TIVWWRGTTKI-----GGP------APSPSVLNVTGVTQS-TMFSCEA   68 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCC-EEEEEETTEEC-----SCS------EESSEEEEECCCSSC-EEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcce-EEEEEECCEEC-----CCC------CCcceEEecCCcccc-EEEEEEE
Confidence            6799999999999999999999998765432 79999999864     111      124566777777899 5999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|..+.  ..|..++|.|+
T Consensus        69 ~N~~G~--~~S~~~~v~Vk   85 (85)
T d1rhfa2          69 HNLKGL--ASSRTATVHLQ   85 (85)
T ss_dssp             EETTEE--EECCCEEEEEC
T ss_pred             EcCCCc--EEEEEEEEEEC
Confidence            999753  46778999885

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.2e-17  Score=104.60  Aligned_cols=94  Identities=14%  Similarity=0.268  Sum_probs=67.9

Q ss_pred             ccceeeccce--eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeee
Q psy9140           7 SSDYEINTGN--TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus         7 ~~~~~v~~~d--~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y   83 (114)
                      .|.+..+++.  ..+.+|++|.|.|.+.+++.+  .++|+||+..+... .....++... .++.|.|.+++.+|+| .|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p--~i~W~~~g~~i~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y   78 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEP--TMSWTKDGEPIENE-EEDDEKHIFSDDSSELTIRNVDKNDEA-EY   78 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCC--EEEEEETTEECCCC---CCSSEEECTTSCEEEECSCCGGGCE-EE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCC--EEEEEeCCcccccc-cccceeEEeecCceEEEeCCCCcccCE-EE
Confidence            4556655554  355689999999999877655  89999999876321 1223344443 4678999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEec
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|.|.|..+.   .+..++|.|..
T Consensus        79 ~C~a~N~~G~---~~~~~~l~V~~   99 (100)
T d1qz1a3          79 VCIAENKAGE---QDASIHLKVFA   99 (100)
T ss_dssp             EEEEEETTEE---EEEEEEEEEEC
T ss_pred             EEEEEECCCE---EEEEEEEEEEE
Confidence            9999998764   45567888754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=100.64  Aligned_cols=84  Identities=20%  Similarity=0.317  Sum_probs=65.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeeeEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y~C~   86 (114)
                      +...++|..+.+|++|.|.|.+. .+.+  .+.|+||+..+.   .....+|.+..+|   .|.|.+++.+|+| .|+|.
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~--~v~W~k~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~   75 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDA--NVKWFKNGEEII---PGPKSRYRIRVEGKKHILIIEGATKADAA-EYSVM   75 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSC--CCEEEETTEECC---CSTTCSEEEEEETTEEEEEEEEECTTTCS-EEEEE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCc--eEEEEEeecccC---CCCCccEEEEEeCCccEEEECccccccCE-EEEEE
Confidence            34568999999999999999983 2222  789999998652   2334567776655   7999999999996 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEec
Q psy9140          87 TTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      |.|.       +..|+|.|++
T Consensus        76 a~n~-------~~~a~l~V~~   89 (90)
T d1x44a1          76 TTGG-------QSSAKLSVDL   89 (90)
T ss_dssp             ETTE-------EEEEEEEEEC
T ss_pred             Eecc-------eEEEEEEEEE
Confidence            9883       3468999986

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=7.5e-17  Score=100.54  Aligned_cols=83  Identities=17%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             eeccceeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      ...|++..+.+|+++.|.|.+. +.+.+  .++|+|++..+      ..++... .+|.|+|.+++.+|+| .|+|.|.|
T Consensus         6 ~~~p~~~~v~~G~~~~l~C~~~~~~p~~--~v~W~k~~~~~------~~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~a~N   75 (89)
T d1gl4b_           6 VEEQRSQSVRPGADVTFICTAKSKSPAY--TLVWTRLHNGK------LPSRAMD-FNGILTIRNVQPSDAG-TYVCTGSN   75 (89)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSSCC--EEEEEEGGGBC------CCTTEEE-ETTEEEECSCCGGGCE-EEEEEEEC
T ss_pred             EcCCCeEEEeCCCcEEEEEEccCCCCCC--EEEEecCCcee------eccccEe-eceEEEEecCCcccCE-EEEEEEEE
Confidence            3457788999999999999996 33222  89999998753      2334443 4799999999999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEEe
Q psy9140          90 KLTGERKISPPSQVMVS  106 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~  106 (114)
                      ..+.   .+..++|.|+
T Consensus        76 ~~G~---~~~~~~l~V~   89 (89)
T d1gl4b_          76 MFAM---DQGTATLHVQ   89 (89)
T ss_dssp             SSCE---EEEEEEEEEC
T ss_pred             CCCE---EEEEEEEEEC
Confidence            9763   4557788875

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.5e-16  Score=100.97  Aligned_cols=90  Identities=16%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc----CCcEEEeecCCCCCCeeeEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----AGALHIRDTGMEDSYIRYYC   85 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~----~G~L~I~~v~~~D~gg~Y~C   85 (114)
                      .++.|.+..|.+|+++.|.|.+.+.++.+ .+.|+|++...   ....+.||.+..    .+.|.|.+++.+|+| .|+|
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~-~v~W~~~~g~~---~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C   77 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEK---LSPNQQRISVVWNDDDSSTLTIYNANIDDAG-IYKC   77 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCC-EEEEECTTSCE---ECCBSSSEEEEEEETTEEEEEECSCCGGGCE-EEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCC-EEEEEEeeeee---eeeccccEEEEeecCcceEEEcccCchhhce-EEEE
Confidence            46789999999999999999997764322 89999965432   223456777643    346999999999995 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEe
Q psy9140          86 QTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|.|..+.  ..++.+.|.|.
T Consensus        78 ~a~N~~G~--~~~~tv~l~V~   96 (97)
T d1epfa1          78 VVTAEDGT--QSEATVNVKIF   96 (97)
T ss_dssp             EEEETTTE--EEEEEEEEEEE
T ss_pred             EEEeCCCc--EEEEEEEEEEE
Confidence            99998753  23446777765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.66  E-value=4.7e-16  Score=98.18  Aligned_cols=85  Identities=13%  Similarity=0.213  Sum_probs=66.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      ..++|.+..|.+|+++.|+|.+++..++ ..+.|+||+..+.+          ...++.|.|.+|+.+|+| .|+|.|.|
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~-~~~~W~kng~~~~~----------~~~~~~l~I~~v~~~dsG-~Y~C~a~n   72 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRKY----------FHHNSDFHIPKATLKDSG-SYFCRGLV   72 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEEE----------EEECCCEEESSCCGGGCE-EEEEEEEE
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCC-cEEEEEEcccccce----------eccccccEECccceeccc-eEEEEEEe
Confidence            4567888889999999999998643222 28999999986421          113678999999999995 99999999


Q ss_pred             ccCCcEEeCCCeEEEEecc
Q psy9140          90 KLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~~  108 (114)
                      ..+  .+.|..++|.|+|+
T Consensus        73 ~~~--~~~S~~v~itV~Ea   89 (89)
T d1fnla2          73 GSK--NVSSETVNITITQA   89 (89)
T ss_dssp             TTE--EEECCCEEEEEECC
T ss_pred             CCC--CeEEeeEEEEEEeC
Confidence            753  35688999999984

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=100.28  Aligned_cols=85  Identities=19%  Similarity=0.202  Sum_probs=65.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+++....|.+|+++.|+|.+.+..++ ..+.|+||+..+.     .     ...++.|.|.+|+.+|+| .|+|.|.|.
T Consensus         4 ilq~p~~~v~eG~~v~L~C~~~~~~p~-~~~~W~k~g~~~~-----~-----~~~~~~l~i~~v~~~dsG-~Y~C~a~n~   71 (88)
T d2fcba2           4 VLQTPHLEFQEGETIVLRCHSWKDKPL-VKVTFFQNGKSKK-----F-----SRSDPNFSIPQANHSHSG-DYHCTGNIG   71 (88)
T ss_dssp             EEECSCSEECTTCCEEEEEEEGGGCCC-EEEEEEETTEEEE-----E-----ESSCCEEEETTCCGGGCE-EEEEEEEET
T ss_pred             EEeCCCCeEecCCeEEEEEEecCCCCC-cEEEEEeeccccc-----c-----cccccccccCccCHHHCC-eEEEEEEeC
Confidence            355667789999999999998543222 2899999998541     1     113678999999999995 999999997


Q ss_pred             cCCcEEeCCCeEEEEeccc
Q psy9140          91 LTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~~~~  109 (114)
                      .+.  ..|...+|.|+.|+
T Consensus        72 ~g~--~~S~~v~l~V~~Ps   88 (88)
T d2fcba2          72 YTL--YSSKPVTITVQAPA   88 (88)
T ss_dssp             TEE--EECCCEEEEECCCC
T ss_pred             CCC--EEeeeEEEEEeCCC
Confidence            643  46779999999885

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-16  Score=101.06  Aligned_cols=72  Identities=19%  Similarity=0.302  Sum_probs=61.0

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      ++..+.+|++|.|+|.+.+ +.+  .+.|.+++..+    ...+.||.+..+|+|.|.|++.+|+| .|+|.|.|..+++
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~--~v~W~~~g~~l----~~~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~A~n~~g~~   76 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLA--RVFWKFQNGVL----KAESPKYGLMGRKNLLIFNLSEGDSG-VYQCLSEERVKNK   76 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTC--EEEEEESSSBC----CCCSSSBCCTTTTCEEECSCCGGGCE-EEEEEEEEECSSS
T ss_pred             hheeEeCCCEEEEEEEeec-cCC--ceeeecCcccc----eeeeeeeecceeeEEEECCCCHHHCc-EEEEEEEEcCCCE
Confidence            4678999999999999976 222  78999999865    24578999999999999999999995 9999999987764

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.3e-16  Score=99.00  Aligned_cols=86  Identities=16%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             eeeccceeEE-EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          10 YEINTGNTFV-LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        10 ~~v~~~d~~v-~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      +++.|.+..+ .+|.++.|.|.+.+.+.+  .++|.+++..+     ..+..+....++.|.|.+++.+|+| .|+|.|.
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p--~i~W~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~   74 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESP--FFSWRTQIDSP-----LNGKVTNEGTTSTLTMNPVSFGNEH-SYLCTAT   74 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSC--EEEEEETTCCC-----CSSEEEEETTEEEEEESSCCGGGCS-EEEEEEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCc--eEEEEecCccc-----eeeeeeeecCCcEEEEecccccccc-eEEEEEE
Confidence            5677877654 579999999999876554  89999988753     2333444555678999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEe
Q psy9140          89 HKLTGERKISPPSQVMVS  106 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~  106 (114)
                      |..+.   .+..++|.|.
T Consensus        75 N~~g~---~~~~~~v~V~   89 (90)
T d1vcaa2          75 CESRK---LEKGIQVEIY   89 (90)
T ss_dssp             ETTEE---EEEEEEEEEE
T ss_pred             eCCCE---EEEEEEEEEE
Confidence            98653   5657777764

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.64  E-value=4.9e-17  Score=102.62  Aligned_cols=83  Identities=14%  Similarity=0.144  Sum_probs=67.8

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCc---EEEeecCCCCCCeeeEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGA---LHIRDTGMEDSYIRYYC   85 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~---L~I~~v~~~D~gg~Y~C   85 (114)
                      .|...++|..|.+|++|.|.|.+ +.+.+  .+.|+||+..+     ..++||.+..+|.   |.|.+++.+|+| .|+|
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~v-s~p~~--~v~W~k~g~~i-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~c   73 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIEL-SEPDV--HGQWKLKGQPL-----TASPDCEIIEDGKKHILILHNCQLGMTG-EVSF   73 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBC-SSSSC--CCBCCSSSCCC-----CSSSSCEEEECSSCEEEECCSCCSCCCS-EECC
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEE-CCCCc--EEEEEEeeeec-----ccceeEEEEeeceeEEEEEcCCChhcCE-EEEE
Confidence            35567899999999999999997 33222  78999999854     5678898877774   999999999996 9999


Q ss_pred             EEeeccCCcEEeCCCeEEEEec
Q psy9140          86 QTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        86 ~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|.|.       +..|+|.|++
T Consensus        74 ~a~n~-------~~sa~l~V~e   88 (89)
T d1tiua_          74 QAANA-------KSAANLKVKE   88 (89)
T ss_dssp             BCSSC-------BCCEEEEEEC
T ss_pred             EECce-------EEEEEEEEEE
Confidence            99873       4468999976

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=3.3e-16  Score=99.65  Aligned_cols=84  Identities=13%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc---cCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT---TAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~---~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ++|..+.+|+++.|+|.+.+++.+  .+.|+||+..+.   .....++...   ..+.|.|.+++.+|+| .|+|.|.|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~--~v~W~k~g~~i~---~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~   83 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMG--YPNYFKNGKDVN---GNPEDRITRHNRTSGKRLLFKTTLPEDEG-VYTCEVDNG   83 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCC--CCEEEETTEECC---CCTTSSEESCSSSTTSEEEESSCCGGGCE-EEEEEECCS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCC--EEEEEEeeeecc---ccceeeeeeeeecCCCEEEEEeccccccE-EEEEEEEEC
Confidence            679999999999999999776544  789999999752   2233444432   3457999999999995 999999999


Q ss_pred             cCCcEEeCCCeEEEE
Q psy9140          91 LTGERKISPPSQVMV  105 (114)
Q Consensus        91 l~~~~~~s~~a~L~V  105 (114)
                      ++..  .+...+|.|
T Consensus        84 ~G~~--~s~s~~L~V   96 (97)
T d1biha3          84 VGKP--QKHSLKLTV   96 (97)
T ss_dssp             SSSC--EEEEEEEEE
T ss_pred             CCcE--EEEEEEEEE
Confidence            8753  344566766

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.2e-15  Score=96.85  Aligned_cols=89  Identities=24%  Similarity=0.358  Sum_probs=64.8

Q ss_pred             eeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeee-----eccCCcEEEc-cCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          16 NTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSI-----IHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~-----~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      ...|.+|++|.|.|.+. +++.+  .++|+||+..+....     ...+.++... .++.|.|.+++.+|+| .|+|.|.
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G-~Y~C~a~   87 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPS--EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG-EYYCQAQ   87 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCC--EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCE-EEEEEEE
T ss_pred             CCEEecCCeEEEEEEeecCCCCC--EEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCE-EEEEEEE
Confidence            34688999999999984 44433  899999998763211     1123344443 3678999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEecc
Q psy9140          89 HKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.++.. ..|...+|.|.+-
T Consensus        88 N~~G~~-~~s~~v~l~V~~l  106 (110)
T d1f97a2          88 NGYGTA-MRSEAAHMDAVEL  106 (110)
T ss_dssp             CSSSCC-EECCCEEEEEESS
T ss_pred             ECCCcE-EEEEEEEEEEEec
Confidence            998654 4466888888763

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.62  E-value=2.3e-16  Score=100.97  Aligned_cols=92  Identities=15%  Similarity=0.207  Sum_probs=62.4

Q ss_pred             cceee-ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccC-------CcEEE----ccCCcEEEeecC
Q psy9140           8 SDYEI-NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSG-------GRYSI----TTAGALHIRDTG   75 (114)
Q Consensus         8 ~~~~v-~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~-------~r~~v----~~~G~L~I~~v~   75 (114)
                      |.|.. .|++..|.+|++|.|.|.+.+.+.+  .|.|+|++..+.......+       .....    ...+.|.|.+++
T Consensus         5 P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           5 PILQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             CEECTTCSCCEEECTTCCEEEEEEEECSSCC--EEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CEEcCCCCCCEEEecCCcEEEEEEEEEcCCC--eEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            44444 3899999999999999999886555  8999998654311000000       01111    124679999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .+|+| .|+|.|.|.++.   .+..+.|.|
T Consensus        83 ~~D~G-~Y~C~a~N~~G~---~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAG-EYTCLAGNSIGI---SFHSAWLTV  108 (109)
T ss_dssp             GGGCE-EEEEEEECSSCE---EEEEEEEEE
T ss_pred             HHHCe-EEEEEEEECCCE---EEEEEEEEE
Confidence            99995 999999999864   455678876

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.3e-16  Score=96.70  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+++....|.+|++++|.|.+.+.. ++..+.|+||+..+     ...     ..++.|.|.+++.+|+| .|+|.|.|.
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~-~~~~~~w~k~g~~~-----~~~-----~~~~~l~i~~~~~~dsG-~Y~C~a~n~   71 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNW-DVYKVIYYKDGEAL-----KYW-----YENHNISITNATVEDSG-TYYCTGKVW   71 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGC-CEEEEEEEETTEEC-----CSC-----CCSSEEEESSCCGGGCE-EEEEEEEET
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCC-CCeEEEEEEeeecc-----ccc-----cccceEEEeeeeeecCc-EEEEEEEeC
Confidence            4677888899999999999985432 22289999999854     111     12578999999999995 999999997


Q ss_pred             cCCcEEeCCCeEEEEecccc
Q psy9140          91 LTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~~~~~  110 (114)
                      .+  ...|.+++|.|+++++
T Consensus        72 ~~--~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          72 QL--DYESEPLNITVIKAPR   89 (89)
T ss_dssp             TE--EEECCCEEEEEECSCC
T ss_pred             CC--CeEeeeEEEEEEeCCC
Confidence            43  3578899999999874

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.61  E-value=3.3e-16  Score=99.67  Aligned_cols=84  Identities=18%  Similarity=0.235  Sum_probs=61.9

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEE-EccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYS-ITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~-v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      +....|.+|+++.|.|.+.+++.+  .++|+||+..+..  .....++. ....+.|.|.+++.+|+| .|+|.|.|.++
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~P~p--~i~W~kng~~l~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G   86 (97)
T d3dara1          12 KRLHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEYG   86 (97)
T ss_dssp             CCEEEECTTCCEEEECCEEEESCC--EEEEEETTEECCG--GGSTTCCEEEGGGTEEEECSCCGGGCE-EEEEEEEETTE
T ss_pred             cccEEECCCCcEEEEEEEeEECCC--EEEEEECCEeccc--cCceeeEEEcCCcEEEEECCCCcccCE-EEEEEEEECCC
Confidence            334567899999999999776555  8999999987521  11112233 334679999999999995 99999999976


Q ss_pred             CcEEeCCCeEEEE
Q psy9140          93 GERKISPPSQVMV  105 (114)
Q Consensus        93 ~~~~~s~~a~L~V  105 (114)
                      .   .+..+.|.|
T Consensus        87 ~---~~~~~~l~V   96 (97)
T d3dara1          87 S---INHTYHLDV   96 (97)
T ss_dssp             E---EEEEEEEEE
T ss_pred             E---EEEEEEEEE
Confidence            3   455677766

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.2e-16  Score=95.93  Aligned_cols=76  Identities=14%  Similarity=0.209  Sum_probs=60.9

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCcE
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGER   95 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~~   95 (114)
                      +..|++|+++.|.|.+.+.+.|  .++|.+++..+            +..++.|.|.+++.+|+| .|+|.|.|..+.  
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P--~i~W~~~~~~~------------~~~~~~l~i~~v~~~DsG-~Y~C~a~N~~g~--   70 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSP--SVQCRSPRGKN------------IQGGKTLSVSQLELQDSG-TWTCTVLQNQKK--   70 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCC--EEEEECTTCCE------------EEESSEEEESSCCGGGCE-EEEEEEEETTEE--
T ss_pred             CeEEECCCeEEEEEEeEcCCch--heEEEeecccc------------eeeeeeeeeeeccccccc-EEEEEEEeCCCE--
Confidence            6789999999999999887655  89999987642            223568999999999995 999999998653  


Q ss_pred             EeCCCeEEEEeccc
Q psy9140          96 KISPPSQVMVSEIA  109 (114)
Q Consensus        96 ~~s~~a~L~V~~~~  109 (114)
                       .+...+|.|...+
T Consensus        71 -~~~~~~v~V~~~~   83 (84)
T d2nxyb2          71 -VEFKIDIVVLAFQ   83 (84)
T ss_dssp             -EEEEEEECEECCC
T ss_pred             -EEEEEEEEEEecC
Confidence             4556777776543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=7.5e-16  Score=101.05  Aligned_cols=78  Identities=21%  Similarity=0.329  Sum_probs=61.1

Q ss_pred             cceeEEEeCCeEEEEeec-CCCCCCcceEEEeeCCeeeeee--eeccCCcEEEccCCcEEEeecCCCCCC--eeeEEEEe
Q psy9140          14 TGNTFVLRGNIAVLQCNI-PAYNHNLLLIAWLREGVSEARS--IIHSGGRYSITTAGALHIRDTGMEDSY--IRYYCQTT   88 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~-~~~~~~~~~vsW~kd~~~~~~~--~~~~~~r~~v~~~G~L~I~~v~~~D~g--g~Y~C~a~   88 (114)
                      +++..+++|+++.|.|.+ .+++.|  .+.|.|++..+...  ......++.+.++|.|.|.+|+.+|+|  |.|+|.|.
T Consensus         9 ~~~~t~~EG~~~~L~C~v~~G~P~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~   86 (111)
T d1biha2           9 THEKTPIEGRPFQLDCVLPNAYPKP--LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK   86 (111)
T ss_dssp             EEEECCBTTEEEEECCCCCEEESCC--EEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEE
T ss_pred             cccccccCCCeEEEEEEcccCCCCC--EEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEE
Confidence            446678899999999997 566555  89999997764321  122346788999999999999999985  36999999


Q ss_pred             eccCC
Q psy9140          89 HKLTG   93 (114)
Q Consensus        89 n~l~~   93 (114)
                      |..+.
T Consensus        87 N~~g~   91 (111)
T d1biha2          87 NAAVD   91 (111)
T ss_dssp             CTTCS
T ss_pred             eCCCC
Confidence            98764

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=96.31  Aligned_cols=97  Identities=19%  Similarity=0.271  Sum_probs=67.4

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeee----eccCCcEEE-ccCCcEEEeecCCCCCC
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSI----IHSGGRYSI-TTAGALHIRDTGMEDSY   80 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~----~~~~~r~~v-~~~G~L~I~~v~~~D~g   80 (114)
                      .|.+.+......|.+|+++.|.|.+. +.+.+  .+.|+|++..+....    ...+.++.. ..++.|.|.+++.+|+|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p--~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G   79 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS--EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG   79 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCC--EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCC--EEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCc
Confidence            34444455567789999999999984 54433  899999998753110    111222222 23678999999999996


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                       .|+|.|.|.++.. ..|...+|.|.|
T Consensus        80 -~Y~C~a~N~~G~~-~~s~~v~v~v~e  104 (104)
T d1nbqa2          80 -EYSCEARNGYGTP-MTSNAVRMEAVE  104 (104)
T ss_dssp             -CEEEEEECSSSCC-EECCCBCCEEEC
T ss_pred             -EEEEEEEECCCce-EEEEEEEEEEEC
Confidence             9999999998643 446677777754

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.1e-17  Score=105.83  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             ccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEcc----CC---cEEEeecCCC
Q psy9140           5 DMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITT----AG---ALHIRDTGME   77 (114)
Q Consensus         5 vv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~----~G---~L~I~~v~~~   77 (114)
                      |-.|++-..+++..+.+|..|.|+|.+.+..++. .+.|++++..+.   .....||.+..    +|   .|.|.+++.+
T Consensus         4 V~~Pp~i~~~~~~~~~~G~~~~l~C~v~~~~p~~-~v~W~~~~~~i~---~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~   79 (115)
T d2crya1           4 VNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLE---SGTSGRYTVETISTEEGVISTLTISNIVRA   79 (115)
T ss_dssp             CCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCS-EEEEESSSCEEC---SEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             EecCCEEecCCCEEEecCCEEEEEEEeecCCCee-EEEEeeeeeeEe---eeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence            4456777788899999999999999997643222 789999998752   22345666542    22   5999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      |.+|.|+|.|.|.++.   .+..++|.|+.+
T Consensus        80 D~~G~Y~C~A~N~~G~---~~~~~~L~V~~~  107 (115)
T d2crya1          80 DFQTIYNCTAWNSFGS---DTEIIRLKEQGS  107 (115)
T ss_dssp             HHHSCEEEEEECSSCE---EEEEECCCCSCS
T ss_pred             cCCeEEEEEEEECCCe---EEEEEEEEEECC
Confidence            9435999999999874   466778887643

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-15  Score=98.64  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------------------------eeccCCcEEEccCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------------------------IIHSGGRYSITTAG   67 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------------------------~~~~~~r~~v~~~G   67 (114)
                      -.|++..|.+|+++.|.|.+.+++.+  .+.|+|++..+...                        ....++|+.+..++
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v~G~P~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   91 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPISGDPAP--TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK   91 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEECCSBSCC--EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET
T ss_pred             CCCCCEEEEcCCeEEEEEEEEEecCC--eEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC
Confidence            45678899999999999999887555  89999988654210                        01224567665422


Q ss_pred             ---cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          68 ---ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        68 ---~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                         .|.|.+++.+|+| .|+|.|.|.++.   .+..++|.|.|
T Consensus        92 ~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~---~~~~~~l~V~d  130 (130)
T d1gxea_          92 DRSIFTVEGAEKEDEG-VYTVTVKNPVGE---DQVNLTVKVID  130 (130)
T ss_dssp             TEEEEECSCCCTTTCE-EEEEEEECSSCE---EEEEEEEEECC
T ss_pred             CEEEEEECcCChhcCE-EEEEEEEECCCE---EEEEEEEEEEC
Confidence               5999999999995 999999999864   45577887754

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.9e-15  Score=96.92  Aligned_cols=97  Identities=11%  Similarity=0.036  Sum_probs=70.5

Q ss_pred             cccceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeE
Q psy9140           6 MSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYY   84 (114)
Q Consensus         6 v~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~   84 (114)
                      +.+.+++.|....+.+|..+.|.|.+.+..+.+. .++|.|++..+-.     +.+.....+..|.|+.++.+|. |.|+
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~-----~~~~~~~~~s~l~i~~~~~dd~-g~yt   76 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR-----EPAVGEPAEVTTTVLVRRDHHG-AQFS   76 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE-----EECCTTTEEEEEEEECCSSCSS-CEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccc-----cccccccceEEEEEeeehhHCC-CEEE
Confidence            3467889999999999999999999976432233 7899999986521     1111112245799999998888 4999


Q ss_pred             EEEeeccCCcEEeCCCeEEEEeccccc
Q psy9140          85 CQTTHKLTGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        85 C~a~n~l~~~~~~s~~a~L~V~~~~~~  111 (114)
                      |+|.|.++.   .+....+.+.+|..+
T Consensus        77 C~A~n~~g~---~~~~~~~~~s~p~~L  100 (103)
T d1iama1          77 CRTELDLRP---QGLELFENTSAPYQL  100 (103)
T ss_dssp             EEEEEECGG---GTSCEEEEECCCEEC
T ss_pred             EEEEeCCCC---ccCeEeeeEcCCCEE
Confidence            999999875   355667777766654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7e-15  Score=93.08  Aligned_cols=85  Identities=20%  Similarity=0.405  Sum_probs=63.2

Q ss_pred             cceeeccce-eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCC---cEEEeecCCCCCCeee
Q psy9140           8 SDYEINTGN-TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAG---ALHIRDTGMEDSYIRY   83 (114)
Q Consensus         8 ~~~~v~~~d-~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G---~L~I~~v~~~D~gg~Y   83 (114)
                      +.|.-...+ ..|.+|.+|.|.|.+.+ +.  +.+.|+||+..|.    ..+.+|.+...|   .|.|.+++.+|+| .|
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~--~~v~W~k~g~~i~----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y   77 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVELAD-HD--AEVKWLKNGQEIQ----MSGSKYIFESIGAKRTLTISQCSLADDA-AY   77 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEECSS-SS--SCCEEEESSSEEC----CCSSSSEEEEETTEEEEEECSCSSSSCE-EE
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEECC-CC--ceEEEEEcCccce----eeeeeEeeeccCCeEEeecCCCCceecE-EE
Confidence            445555544 47999999999999832 22  2789999999652    345667665433   5999999999995 99


Q ss_pred             EEEEeeccCCcEEeCCCeEEEEec
Q psy9140          84 YCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        84 ~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|.|.|.       +..++|.|+|
T Consensus        78 ~c~a~n~-------~~s~~l~V~E   94 (94)
T d1pd6a_          78 QCVVGGE-------KCSTELFVKE   94 (94)
T ss_dssp             EEEETTE-------EECCEEEEEC
T ss_pred             EEEEeeE-------EEEEEEEEEC
Confidence            9999873       4467999875

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.1e-15  Score=95.15  Aligned_cols=81  Identities=12%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee-------eccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI-------IHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~-------~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      .+..+.+..|.+|+++.|+|.+.+++.|  .+.|+|++..+....       ....+|+.. .++.|.|.+++.+|+| .
T Consensus         7 V~~~~~~v~v~~g~~v~L~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G-~   82 (105)
T d1nbqa1           7 VHSSEPEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPTGITFKSVTREDTG-T   82 (105)
T ss_dssp             EECSCSBCCEETTCCCEEECEEESCSSE--EEEEEEEETTEEEESEETTEECTTTTTTCEE-ETTEEECSCCCTTSCS-E
T ss_pred             EECCCCeEEEeCCCeEEEEEEeCCCCCC--eeEEEeeeeceeeeeeccceeeccccceeee-cCceEEEeccccccee-e
Confidence            4456677889999999999999776544  899999877653211       111344444 3689999999999996 9


Q ss_pred             eEEEEeeccCCc
Q psy9140          83 YYCQTTHKLTGE   94 (114)
Q Consensus        83 Y~C~a~n~l~~~   94 (114)
                      |+|.|.|..+..
T Consensus        83 Y~C~a~n~~G~~   94 (105)
T d1nbqa1          83 YTCMVSEEGGNS   94 (105)
T ss_dssp             EEEEEEETTSSC
T ss_pred             EEEEEEECCCCE
Confidence            999999998653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-15  Score=92.54  Aligned_cols=77  Identities=19%  Similarity=0.224  Sum_probs=58.3

Q ss_pred             eeEEEeCCeEEEEeecC-CCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCCc
Q psy9140          16 NTFVLRGNIAVLQCNIP-AYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTGE   94 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~-~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~~   94 (114)
                      +..+.+|+++.|.|.+. +.+.+  .++|.+++..+       +.+.....++.|.|.+++.+|+| .|+|+|.|..+  
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p--~v~W~~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~Asn~~g--   79 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGA--SVQWRGLDTSL-------GAVQSDTGRSVLTVRNASLSAAG-TRVCVGSCGGR--   79 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTC--EEEEESSTTTT-------CCEEEESSEEEEEECSCCGGGCE-EEEEEEEETTE--
T ss_pred             eEEEEeCCcEEEEEEecCCCCcc--EEEEEEeeeee-------eeeeccCceeeEEcCccChhhCC-cEEEEEEeCCC--
Confidence            45677999999999874 43333  89999988743       33444555678999999999995 99999999653  


Q ss_pred             EEeCCCeEEEE
Q psy9140          95 RKISPPSQVMV  105 (114)
Q Consensus        95 ~~~s~~a~L~V  105 (114)
                       ..+..++|.|
T Consensus        80 -~~~~s~~l~V   89 (90)
T d1gsma1          80 -TFQHTVQLLV   89 (90)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -cEEEEEEEEE
Confidence             3555777776

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=94.31  Aligned_cols=84  Identities=11%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             eEEEeCCeEEEEe------ecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          17 TFVLRGNIAVLQC------NIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        17 ~~v~~G~~AvL~C------~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +.+..|..+.|.|      .+.+.+.|  .++|+||+..|     ..++++.+..+|.|.|.+++.+|+| .|+|.|.|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P--~i~W~kdg~~l-----~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~   80 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELP--KLQWYKDCKPL-----LLDNIHFSGVKDRLIVMNVAEKHRG-NYTCHASYT   80 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCC--CCEEEETTEEC-----CCCSSSEEEETTEEEESSCCGGGCE-EEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCC--EEEEEECCccc-----cCCCcEEEecCCEEEEcccccccCc-EEEEEEEEC
Confidence            6788999999999      34444333  89999999964     2344445556899999999999995 999999998


Q ss_pred             cCCcEE-eCCCeEEEEecc
Q psy9140          91 LTGERK-ISPPSQVMVSEI  108 (114)
Q Consensus        91 l~~~~~-~s~~a~L~V~~~  108 (114)
                      .++... .+....|.|.+.
T Consensus        81 ~~g~~~~vt~~i~~~v~~~   99 (103)
T d1iray2          81 YLGKQYPITRVIEFITLEE   99 (103)
T ss_dssp             ETTEEEEEEEEEEEEEECC
T ss_pred             cCCEEEEEEEEEEEEECCC
Confidence            876421 123445555444

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.2e-14  Score=92.27  Aligned_cols=79  Identities=11%  Similarity=0.182  Sum_probs=59.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      ...+.+..|.+|++|.|.|.+.+.+.+  .+.|+|++......       ......|+... +++|+|.+|+.+|+| .|
T Consensus         5 ~t~~~~v~v~~G~~v~l~C~~~g~p~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~tL~I~~v~~~D~G-~Y   80 (102)
T d1f97a1           5 YTAQSDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNG-EY   80 (102)
T ss_dssp             ECSCSEEEEETTCCEEEECEEESCSSE--EEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCE-EE
T ss_pred             EccCCcEEEeCCCEEEEEEEcCCCCCC--eEEEEeccccceeeeccccccccceeeEEEec-CCEEEEeECCccCCE-EE
Confidence            455677889999999999999775443  89999976654321       11223455443 789999999999995 99


Q ss_pred             EEEEeeccCC
Q psy9140          84 YCQTTHKLTG   93 (114)
Q Consensus        84 ~C~a~n~l~~   93 (114)
                      +|.|.|..+.
T Consensus        81 ~C~a~n~~g~   90 (102)
T d1f97a1          81 TCMVSEEGGQ   90 (102)
T ss_dssp             EEEEEETTSS
T ss_pred             EEEEEECCCC
Confidence            9999999764

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=2.7e-14  Score=88.91  Aligned_cols=79  Identities=20%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      ...++|++..|.+|+++.|.|.+.+.+.+. .+.|+||+..+     ..       .++.|.|.+++.+|+| .|+|.|.
T Consensus         6 ~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~-~~~w~~~g~~~-----~~-------~~~~l~i~~v~~~dsG-~Y~C~a~   71 (85)
T d2fcba1           6 VLKLEPQWINVLQEDSVTLTCRGTHSPESD-SIQWFHNGNLI-----PT-------HTQPSYRFKANNNDSG-EYTCQTG   71 (85)
T ss_dssp             EEEEESCCSEEETTCEEEEEEECSSCCCTT-CCEEEETTEEC-----TT-------CCSSEEEEECCGGGCE-EEEEECT
T ss_pred             EEEECCCCeEEcCCCeEEEEEEEeecccee-EEEeecccccc-----cc-------cccceEEeeccccCCc-EEEEECC
Confidence            367889999999999999999997754332 67999999853     11       2578999999999995 9999999


Q ss_pred             eccCCcEEeCCCeEEEEe
Q psy9140          89 HKLTGERKISPPSQVMVS  106 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V~  106 (114)
                      |..     .|.+++|.|.
T Consensus        72 ns~-----~S~~v~l~V~   84 (85)
T d2fcba1          72 QTS-----LSDPVHLTVL   84 (85)
T ss_dssp             TSB-----CCCCEEEEEE
T ss_pred             CCc-----ccccEEEEEE
Confidence            852     4778999885

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=4.8e-14  Score=90.28  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      -.....|+++.|+|...+.. +.+ .|.|.|++..+..     .....++|+.+.++|+|+|+|++.+|+| .|+|.+.|
T Consensus         4 tV~G~~G~sV~L~~~~~~~~-~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG-~Y~c~v~~   81 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMT-DDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG-TYNVTVYS   81 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCC-TTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCE-EEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCc-cchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCE-EEEEEEEe
Confidence            34678899999999642222 234 8999999887642     2234578999999999999999999995 99999998


Q ss_pred             ccCCcEEeCCCeEEEEec
Q psy9140          90 KLTGERKISPPSQVMVSE  107 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V~~  107 (114)
                      .-+ ....+...+|.|.|
T Consensus        82 ~~g-~~~~~~~~~L~V~E   98 (98)
T d1hnga1          82 TNG-TRILNKALDLRILE   98 (98)
T ss_dssp             TTC-CEEEEEEEEEEEEC
T ss_pred             CCC-CEEEEEEEEEEEEC
Confidence            744 33445577787764

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.52  E-value=2.8e-14  Score=88.75  Aligned_cols=77  Identities=22%  Similarity=0.277  Sum_probs=61.7

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      ..++|.+..|.+|++++|.|.+.+.+.+. .+.|.||+..+     .       ..+..|.|.+++.+|+| .|+|.|.|
T Consensus         8 i~~~P~~~~v~~G~~vtL~C~~~~~~~~~-~~~~~~~~~~~-----~-------~~~~~l~i~~~~~~d~G-~Y~C~a~~   73 (84)
T d1fnla1           8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLI-----S-------SQASSYFIDAATVNDSG-EYRCQTNL   73 (84)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCCBTTBC-CCEEEETTEEE-----E-------SSCSEEEESSCCGGGCE-EEEEECSS
T ss_pred             EEECCCCcEEeCCCeEEEEEEeccCCCCe-EEEEeeeceee-----e-------ecceeeEecCCcccCCE-EEEEEccC
Confidence            56889999999999999999998765432 67888888743     1       12468999999999995 99999987


Q ss_pred             ccCCcEEeCCCeEEEE
Q psy9140          90 KLTGERKISPPSQVMV  105 (114)
Q Consensus        90 ~l~~~~~~s~~a~L~V  105 (114)
                      ..     .|.+++|.|
T Consensus        74 s~-----~S~~v~L~V   84 (84)
T d1fnla1          74 ST-----LSDPVQLEV   84 (84)
T ss_dssp             SC-----CCCCEEEEE
T ss_pred             CC-----ccccEEEEC
Confidence            52     477899887

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=88.39  Aligned_cols=80  Identities=24%  Similarity=0.348  Sum_probs=63.1

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.+.++|....|.+|+++.|.|.+.+.+.+. ...|+||+..+     .       ..++.|.|.+++.+|+| .|+|.|
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~-~~~~~~~~~~~-----~-------~~~~~l~i~~v~~~d~G-~Y~C~a   67 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLS-----E-------ETNSSLNIVNAKFEDSG-EYKCQH   67 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC-----CCEEEETTEEC-----S-------CCSSEEEECSCCGGGCE-EEEEEC
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeec-ceeeeeeeeee-----e-------cccceeEECCCChhhCC-cEEEEe
Confidence            5678899999999999999999997764432 66899998753     1       13567999999999995 999999


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      .|..     .|.++.|.|.
T Consensus        68 ~~s~-----~S~~v~l~V~   81 (82)
T d1f2qa1          68 QQVN-----ESEPVYLEVF   81 (82)
T ss_dssp             TTSS-----CCCCEEEEEE
T ss_pred             cCCC-----CcccEEEEEE
Confidence            8852     4778999885

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.7e-14  Score=91.28  Aligned_cols=90  Identities=17%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .|-...+.+|++++|+|.+....+++ .+.|+|++..+.. ......|+.. .++.|.|.+++.+|+| .|+|.|.|..+
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~-~i~W~k~~~~~~~-~~~~~~~~~~-~~~~L~I~~v~~~D~G-~Y~C~a~N~~g   83 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKG-TITWYKDDSKTPV-STEQASRIHQ-HKEKLWFVPAKVEDSG-HYYCVVRNSSY   83 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSS-EEEEECSSTTSBC-CCCTTSSEEE-ETTEEEETTCCGGGCE-EEEEEEEETTE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCc-eEEEEECCccccc-ccccceEEec-cCCEEEeccceecCCE-EEEEEEECCCC
Confidence            34445788999999999874321122 8999999875422 1233455544 4789999999999995 99999999865


Q ss_pred             CcEEeCCCeEEEEeccc
Q psy9140          93 GERKISPPSQVMVSEIA  109 (114)
Q Consensus        93 ~~~~~s~~a~L~V~~~~  109 (114)
                      .   ....+.|.|.+..
T Consensus        84 ~---~~~~~~L~V~~~~   97 (101)
T d1iray1          84 C---LRIKISAKFVENE   97 (101)
T ss_dssp             E---EEEEEEEEEECCC
T ss_pred             e---EEEEEEEEEEeCC
Confidence            3   3446889888754

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.8e-15  Score=92.27  Aligned_cols=75  Identities=12%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .|++..+.+|+.+.|.|.+.+.+.|  .++|+||+..+.             +.  +.|.+++.+|+| .|+|.|.|.++
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P--~v~W~k~g~~~~-------------~~--~~~~~v~~~d~G-~Y~C~A~N~~G   71 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLP--ELKCLKDGTFPL-------------PI--GESVTVTRDLEG-TYLCRARSTQG   71 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCC--EEEEEETTTEEC-------------CT--TSCEECCGGGCE-EEEEEEEETTE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCcc--EEEEEEeeccce-------------ee--eeeeccccCCCC-EEEEEEEcCCC
Confidence            4788899999999999999887655  899999987531             22  235678999995 99999999986


Q ss_pred             CcEEeCCCeEEEEecc
Q psy9140          93 GERKISPPSQVMVSEI  108 (114)
Q Consensus        93 ~~~~~s~~a~L~V~~~  108 (114)
                      .   .+..+.|.|..|
T Consensus        72 ~---~~~~~~l~V~~P   84 (84)
T d2oz4a3          72 E---VTREVTVNVLSP   84 (84)
T ss_dssp             E---EEEEEEEEEECC
T ss_pred             E---EEEEEEEEEECC
Confidence            3   466788988765

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2.5e-13  Score=88.29  Aligned_cols=88  Identities=19%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee--------------eeeccCCcEEEccCCcEEEeecCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR--------------SIIHSGGRYSITTAGALHIRDTGMED   78 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~--------------~~~~~~~r~~v~~~G~L~I~~v~~~D   78 (114)
                      .+.-..|.+|.+++|+|...+  .....+.|.|+......              +...-.+|..+.++|+|.|+||+.+|
T Consensus         5 ~~~P~~v~~G~~V~L~c~~~p--~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D   82 (107)
T d1l6za1           5 EAVPPQVAEDNNVLLLVHNLP--LALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKD   82 (107)
T ss_dssp             EEESSSCCTTCCEEEEEESCC--TTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGG
T ss_pred             EEcCCcccCCCCEEEEecCCC--CCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchh
Confidence            333345789999999998532  12228999997653210              00112479999999999999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      +| .|+|.+.+.-  ....+..+.|.|
T Consensus        83 ~G-~Y~c~v~~~~--~~~~~~~v~L~V  106 (107)
T d1l6za1          83 MG-VYTLDMTDEN--YRRTQATVRFHV  106 (107)
T ss_dssp             CE-EEEEEEEETT--EEECCCCEEECC
T ss_pred             CE-EEEEEEEECC--CCEEEEEEEEEE
Confidence            95 9999998752  223455666655

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-13  Score=87.00  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeec-cCCcEEEcc---------CCcEEEeecCCCCCCeeeEEE
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIH-SGGRYSITT---------AGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~-~~~r~~v~~---------~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      ..|..|.++.|.|.+.+.+.+  .+.|.+|+..+...... ...+.....         ...|.|.+++.+|.|+.|+|.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p--~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~   89 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSD--IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF   89 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTC--EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCC--eEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence            346689999999999776554  89999999865210000 000111110         246999999999996359999


Q ss_pred             EeeccCC
Q psy9140          87 TTHKLTG   93 (114)
Q Consensus        87 a~n~l~~   93 (114)
                      |.|.++.
T Consensus        90 A~N~~G~   96 (107)
T d1iray3          90 AKNTHGI   96 (107)
T ss_dssp             EECSSCE
T ss_pred             EEeCCCe
Confidence            9999863

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-13  Score=86.98  Aligned_cols=81  Identities=10%  Similarity=0.104  Sum_probs=58.7

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--cc-----CCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--TT-----AGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~~-----~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      .+..+.|.|.+.+++++  .++|+||+..+     ..+.++.+  ..     .+.|.|.+++.+|+| .|+|+|.|.++.
T Consensus        16 ~~~~~~i~~~v~G~P~P--~v~W~~n~~~i-----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~G~   87 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPP--TLHWLHNGQPL-----RESKIIHVEYYQEGEISEGCLLFNKPTHYNNG-NYTLIAKNPLGT   87 (105)
T ss_dssp             CCCEEEEEEEEECSSCC--EEEEEETTEEC-----CCSSSEEEEEEECSSEEEEEEEEESCCGGGCE-EEEEEEEETTEE
T ss_pred             EEEEEEEEEEEEEeCCC--eEEEEeCcccc-----CCCcceeeeEEeecccceEEEEEeecccccce-EEEEEEEcCCCE
Confidence            34445577788887665  89999999864     33444432  21     245999999999995 999999999764


Q ss_pred             cEEeCCCeEEEEecccccc
Q psy9140          94 ERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        94 ~~~~s~~a~L~V~~~~~~~  112 (114)
                         .+..++|.|.+++...
T Consensus        88 ---~~~~~~v~V~~~P~P~  103 (105)
T d1wwca_          88 ---ANQTINGHFLKEPFPV  103 (105)
T ss_dssp             ---EEEEEEECCSCCCCCS
T ss_pred             ---EEEEEEEEEEeCCCCC
Confidence               5667888888776544

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.6e-13  Score=86.42  Aligned_cols=81  Identities=6%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc----c----CCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT----T----AGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~----~----~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      ..+....|.|.+.|++.|  .+.|+||+..|     ..+.++.+.    .    .+.|.|.+++.+|+| .|+|.|.|.+
T Consensus        14 ~~~~~~~i~~~v~G~P~P--~i~W~~~g~~l-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~   85 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKP--ALQWFYNGAIL-----NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG-DYTLIAKNEY   85 (103)
T ss_dssp             CCCCEEEEEEEEECSSCC--EEEEEETTEEE-----CCCSSEEEEEEEECSSEEEEEEEEESCCGGGCE-EEEEEEECSS
T ss_pred             ccceeEEEEEEEEEeCCC--EEEEEECCEEe-----eeeeeeeeeecccccccceEEEEECCCCHHhCc-eEEEEEeccC
Confidence            378888999999887655  89999999864     334444432    1    236999999999995 9999999998


Q ss_pred             CCcEEeCCCeEEEEeccccc
Q psy9140          92 TGERKISPPSQVMVSEIALP  111 (114)
Q Consensus        92 ~~~~~~s~~a~L~V~~~~~~  111 (114)
                      +.   .+...+|.|.+++++
T Consensus        86 G~---~~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          86 GK---DEKQISAHFMGWPGI  102 (103)
T ss_dssp             CE---EEEEEEECCSCCCCC
T ss_pred             CE---EEEEEEEEEEeCCCC
Confidence            75   566788888887764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.7e-13  Score=82.84  Aligned_cols=82  Identities=12%  Similarity=0.088  Sum_probs=57.6

Q ss_pred             ceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee-------eccCCcEEEc-cCCcEEEeecCCCCCCeeeEEE
Q psy9140          15 GNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI-------IHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        15 ~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~-------~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      ++..+..|.+++|+|....   |...|.|.|++..++...       .....|..+. .+|+|.|+|++.+|+| .|+|.
T Consensus         3 ~~v~~~~G~sVtl~c~~~~---p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG-~Y~c~   78 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSNV---PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED-EYEME   78 (93)
T ss_dssp             EEEEEETTCCEEECCCCSS---CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCE-EEEEE
T ss_pred             cEEEEEECCCEEEEecCCC---CCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCE-EEEEE
Confidence            5678999999999997632   212899999998764210       1112455554 3789999999999995 99999


Q ss_pred             EeeccCCcEEeCCCeEEEE
Q psy9140          87 TTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V  105 (114)
                      |.|..+     +...+|.|
T Consensus        79 ~~n~~~-----t~~~~l~V   92 (93)
T d1ccza1          79 SPNITD-----TMKFFLYV   92 (93)
T ss_dssp             CTTCCS-----CEEEEEEE
T ss_pred             EECCCc-----EEEEEEEE
Confidence            988632     33455554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=3.4e-12  Score=82.94  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeee--------e----ccCCcEEEcc------CCcEEEeecCCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSI--------I----HSGGRYSITT------AGALHIRDTGME   77 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~--------~----~~~~r~~v~~------~G~L~I~~v~~~   77 (114)
                      ..+.+|++|+|.|.+.+...... .|.|+|++.......        .    .-..|..+..      +.+|.|+||+.+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            67889999999998732222222 789999764321000        0    1123444421      347999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEecccccc
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVSEIALPL  112 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~~~  112 (114)
                      |+| .|+|.+.+..+   ..+...+|.|++|...+
T Consensus        92 D~G-~Y~C~v~~~~~---~~~~~v~L~V~~P~~~~  122 (126)
T d1pkoa_          92 DEG-GYTCFFRDHSY---QEEAAVELKVEDPFYWI  122 (126)
T ss_dssp             GCE-EEEEEEEETTE---EEEEEEEEEEECTTTTS
T ss_pred             HCe-EEEEEEEECCC---EEEEEEEEEEeCCCEEe
Confidence            995 99999998633   24557799999987665

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.9e-13  Score=85.29  Aligned_cols=86  Identities=8%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             cceeEEEeCCeEE---EEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE--cc--------CCcEEEeecCCCCCC
Q psy9140          14 TGNTFVLRGNIAV---LQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI--TT--------AGALHIRDTGMEDSY   80 (114)
Q Consensus        14 ~~d~~v~~G~~Av---L~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v--~~--------~G~L~I~~v~~~D~g   80 (114)
                      |.+..+.+|..+.   |.|.+.+++.+  .++|+||+..|     ..+.++..  ..        .+.|.|.+++.+|+|
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P--~v~W~~ng~~l-----~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   76 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAP--SLRWLFNGSVL-----NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG   76 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCC--EEEEEETTEEC-----CCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCC--eEEEEEeeeEc-----cCccceeeeeeeeeeeeeccceEEEECcccHHHCc
Confidence            4555554555554   55678887655  89999999864     23333332  11        235999999999995


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEecccc
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVSEIAL  110 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~~~~~  110 (114)
                       .|+|+|.|.++.   .+...+|.|.+++.
T Consensus        77 -~Y~C~A~N~~G~---~~~~i~v~v~~~P~  102 (107)
T d1he7a_          77 -NYTLLAANPFGQ---ASASIMAAFMDNPF  102 (107)
T ss_dssp             -EEEEEEEETTEE---EEEEEEECCCSCTT
T ss_pred             -EEEEEEEeCCCE---EEEEEEEEEEcCCC
Confidence             999999999864   45577888877764

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-12  Score=82.97  Aligned_cols=78  Identities=12%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccC---CcEEEeecCCCCCCeeeEEEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTA---GALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~---G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +.++...+.+|..+.|.|.+.+.-+.+. .|+|+||+..+...   ...+......   -.|.|.....+| ||.|+|+|
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~---~~~~~~~~~~~~~s~l~~~~~~~d~-g~~ytC~A   82 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYE---TFGKAAPAPQEATATFNSTADREDG-HRNFSCLA   82 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEE---ECCSSTTCTTCEEEEEEEECCGGGG-GCEEEEEE
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeec---ccceEeecccceeEEEEEeeehhcC-CcEEEEEE
Confidence            5677788999999999999976432233 89999999976321   1111111111   135555555555 46999999


Q ss_pred             eeccCC
Q psy9140          88 THKLTG   93 (114)
Q Consensus        88 ~n~l~~   93 (114)
                      .|.++.
T Consensus        83 ~n~~~~   88 (106)
T d1zxqa1          83 VLDLMS   88 (106)
T ss_dssp             EEECGG
T ss_pred             EecCCC
Confidence            998753

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.1e-11  Score=76.92  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             eeEEEeCCeEEEEeecCCCCCCcc--eEEEeeCCeeeeeee-------eccCCcEEEccCC--cEEEeecCCCCCCeeeE
Q psy9140          16 NTFVLRGNIAVLQCNIPAYNHNLL--LIAWLREGVSEARSI-------IHSGGRYSITTAG--ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~~~~~--~vsW~kd~~~~~~~~-------~~~~~r~~v~~~G--~L~I~~v~~~D~gg~Y~   84 (114)
                      ...+..|++|+|+|.......+..  .+.|.+++..+....       ..-.+|.....+|  +|.|+|++.+|+| .|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G-~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEG-TYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCE-EEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCe-EEE
Confidence            356789999999998754322222  789999987653110       1114566665555  7999999999995 999


Q ss_pred             EEEeeccCCc
Q psy9140          85 CQTTHKLTGE   94 (114)
Q Consensus        85 C~a~n~l~~~   94 (114)
                      |.+.+..++.
T Consensus        82 C~V~~~~~~~   91 (105)
T d1dr9a1          82 CVVLKYEKDA   91 (105)
T ss_dssp             EEEEECCTTS
T ss_pred             EEEEeCCCCC
Confidence            9998765554

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=3.1e-10  Score=71.76  Aligned_cols=94  Identities=17%  Similarity=0.144  Sum_probs=60.8

Q ss_pred             eeec-cceeEEEeCCeEEEEeecC--CCCCC-cc-eEEEeeCCeee---eee-------eeccCCcEEEcc-----CCcE
Q psy9140          10 YEIN-TGNTFVLRGNIAVLQCNIP--AYNHN-LL-LIAWLREGVSE---ARS-------IIHSGGRYSITT-----AGAL   69 (114)
Q Consensus        10 ~~v~-~~d~~v~~G~~AvL~C~~~--~~~~~-~~-~vsW~kd~~~~---~~~-------~~~~~~r~~v~~-----~G~L   69 (114)
                      |+|+ |++..+.+|.++.|+|.+.  ..... .. .+.|.+.....   +..       .....+|+.+..     +.+|
T Consensus         2 w~V~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   81 (118)
T d1qfoa_           2 WGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNL   81 (118)
T ss_dssp             CEEECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCE
T ss_pred             cEEECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEE
Confidence            4444 8889999999999999862  22111 12 56788753321   110       012357888852     3469


Q ss_pred             EEeecCCCCCCeeeEEEEeeccCCcEEeC--CCeEEEEe
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLTGERKIS--PPSQVMVS  106 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s--~~a~L~V~  106 (114)
                      .|+||+.+|+| .|.|.+...-..  +.+  ...+|.|+
T Consensus        82 ~I~~v~~~DsG-~Y~C~v~~~~~~--~~~~~~~~~ltVt  117 (118)
T d1qfoa_          82 LLKDLKPEDSG-TYNFRFEISDSN--RWLDVKGTTVTVT  117 (118)
T ss_dssp             EECSCCGGGCE-EEEEEEECC-CC--EEECSSCEEEEEE
T ss_pred             EECCCChhHCE-EEEEEEEeCCCC--eEEcCCCEEEEEe
Confidence            99999999995 999999765322  333  37788875

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=2.1e-10  Score=73.61  Aligned_cols=94  Identities=13%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCC-Ccc-eEEEeeCCe--e---eeee------eec----cCCcEEEcc-----CCcE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNH-NLL-LIAWLREGV--S---EARS------IIH----SGGRYSITT-----AGAL   69 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~-~~~-~vsW~kd~~--~---~~~~------~~~----~~~r~~v~~-----~G~L   69 (114)
                      ..|.+..+..|.+|+|+|....... ... .+.|.|...  .   .+..      ...    -.+|+.+..     +.+|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            4678889999999999998632111 122 789987321  1   1110      001    125777632     3579


Q ss_pred             EEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .|+|++.+|+| .|.|.+.+.-+... .+...+|.|.|
T Consensus        84 ~I~~v~~~DsG-~Y~C~v~~~~~~~~-~~~~v~L~V~e  119 (119)
T d1neua_          84 VIHNLDYSDNG-TFTCDVKNPPDIVG-KTSQVTLYVFE  119 (119)
T ss_dssp             EECSCCGGGCE-EEEEEEEC----CC-EEEEEEEEEEC
T ss_pred             EECCCChHHCE-EEEEEEEECCCcCc-eEEEEEEEEEC
Confidence            99999999995 99999998643221 23356777754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=1.2e-09  Score=71.07  Aligned_cols=96  Identities=23%  Similarity=0.348  Sum_probs=66.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Cee---eee-----eeeccCCcEEEcc--CC---cEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVS---EAR-----SIIHSGGRYSITT--AG---ALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~---~~~-----~~~~~~~r~~v~~--~G---~L~I~~v~   75 (114)
                      ...|....+.+|++|.|.|........+ .+.|+|-  ++.   ++.     .....++||.+..  ++   .|.|.+++
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~~~-~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSEDL-MLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCTTC-EEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCCcc-eEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            4678889999999999999875433232 6899983  221   111     1124467898753  33   39999999


Q ss_pred             CCCCCeeeEEEEeeccCC-cEEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~~  108 (114)
                      .+|+ |.|.|.+...-++ ...-...++|.|++.
T Consensus        82 ~~Ds-g~YyCa~~~~~~~~~~~FG~GT~L~V~~k  114 (114)
T d3bp5a1          82 RNDS-GIYLCGAISLHPKAKIEESPGAELVVTER  114 (114)
T ss_dssp             GGGC-EEEEEEEECSSSSCCCEECCCEEEEEECC
T ss_pred             cCCC-eEEEEEEEeCCCCcceEECcCeEEEEEEC
Confidence            9999 5999988754322 223467899999873

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.9e-10  Score=72.14  Aligned_cols=86  Identities=16%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             eEEEeCCeEEEEeecCCCCCC-cc-eEEEeeCCeee-------ee-------ee--eccCCcEEEcc------CCcEEEe
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHN-LL-LIAWLREGVSE-------AR-------SI--IHSGGRYSITT------AGALHIR   72 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd~~~~-------~~-------~~--~~~~~r~~v~~------~G~L~I~   72 (114)
                      ..+.+|++|.|.|.+.+...+ .. .+.|.+.....       +.       +.  ..-.+|+.+..      +.+|.|+
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            478999999999997432222 22 78998742211       00       00  01135777642      2479999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |++.+|+| .|.|.+.+..+   ..+...+|.|.
T Consensus        94 ~v~~~D~G-~Y~C~v~~~~~---~~~~~~~L~V~  123 (124)
T d1eaja_          94 NLQLSDIG-TYQCKVKKAPG---VANKKIHLVVL  123 (124)
T ss_dssp             SCCGGGCE-EEEEEEEETTE---EEEEEEEEEEE
T ss_pred             ccEEccCE-EEEEEEEECCC---eEEeEEEEEEE
Confidence            99999995 99999998643   24556677764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.7e-09  Score=68.75  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             eEEEeCCeEEEEeecCCCC--CCcc-eEEEeeCCeeeeeeee-------ccCC----cEEE-ccCCcEEEeecCCCCCCe
Q psy9140          17 TFVLRGNIAVLQCNIPAYN--HNLL-LIAWLREGVSEARSII-------HSGG----RYSI-TTAGALHIRDTGMEDSYI   81 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~--~~~~-~vsW~kd~~~~~~~~~-------~~~~----r~~v-~~~G~L~I~~v~~~D~gg   81 (114)
                      ..+..|++|.|+|......  .... .+.|.+++...+....       ..++    |... ..+.+|.|+||+.+|+| 
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G-   82 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG-   82 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE-
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE-
Confidence            4688999999999973221  1122 5677776665432110       1122    3333 23567999999999995 


Q ss_pred             eeEEEEeeccCCc-EE-eCCCeEEEEe
Q psy9140          82 RYYCQTTHKLTGE-RK-ISPPSQVMVS  106 (114)
Q Consensus        82 ~Y~C~a~n~l~~~-~~-~s~~a~L~V~  106 (114)
                      .|.|.+.+.-.+. .+ ......|.|.
T Consensus        83 ~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          83 LYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEcceEEEEEE
Confidence            9999997654322 11 2335566664

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.1e-10  Score=71.64  Aligned_cols=94  Identities=23%  Similarity=0.271  Sum_probs=60.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeee-----eee----eeccCCcEEEccC-----CcEEEeecCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSE-----ARS----IIHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~-----~~~----~~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..|++..+.+|.+|.|.|..+....... .+.|.|....-     +..    .....+|+.+..+     .+|.|++++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            4788999999999999999754222222 67898743221     100    0122467766422     3699999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      +|+| .|.|.+...-.+.   ....+|.|.++.
T Consensus        84 ~DsG-~Y~C~v~~~~~~~---~~~v~L~V~~~~  112 (116)
T d1xeda_          84 DDSG-RYKCGLGINSRGL---SFDVSLEVLEHH  112 (116)
T ss_dssp             GGCE-EEEEEESCGGGCC---EEEEEEEEECCC
T ss_pred             CCCE-EEEEEEEcCCCCc---eEeEEEEEECCC
Confidence            9995 9999987543322   225688887764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.9e-10  Score=69.40  Aligned_cols=71  Identities=17%  Similarity=0.274  Sum_probs=48.0

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeee---------eccCCcEEEc----c--CCcEEEeecCCCCCCe
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSI---------IHSGGRYSIT----T--AGALHIRDTGMEDSYI   81 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~---------~~~~~r~~v~----~--~G~L~I~~v~~~D~gg   81 (114)
                      ....+|.+|.|+|.....  ....+.|.+.....++..         ..-.+|+...    .  +.+|.|+|++.+|+| 
T Consensus         4 V~~~~G~svtL~C~~s~~--~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG-   80 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQK--KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD-   80 (97)
T ss_dssp             EEEETTSCEEECCBCSSS--SCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCE-
T ss_pred             EEEEcCCcEEEEEEEecC--CCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCE-
Confidence            356799999999997442  222789998755432111         1123566542    1  236999999999995 


Q ss_pred             eeEEEEeec
Q psy9140          82 RYYCQTTHK   90 (114)
Q Consensus        82 ~Y~C~a~n~   90 (114)
                      .|.|.+.+.
T Consensus        81 ~Y~C~v~~~   89 (97)
T d2nxyb1          81 TYICEVEDQ   89 (97)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEEecC
Confidence            999999874

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.93  E-value=8.3e-09  Score=66.44  Aligned_cols=94  Identities=18%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eee----eeccCCcEEEccCC---cEEEeecCCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARS----IIHSGGRYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      .+|.+..|.+|++|.|.|......... .+.|+|-  ++..   +..    ......|+.+..++   .|.|++++.+|+
T Consensus         3 tQP~svsv~~G~~vtl~C~~s~~~~~~-~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   81 (110)
T d2esvd1           3 TQPPSMDCAEGRAANLPCNHSTISGNE-YVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDT   81 (110)
T ss_dssp             BCCSEEEEETTSCEEEEEECTTCCTTE-EEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGC
T ss_pred             CcCCEEEECCCCCEEEEEEEcCCCCCC-eEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCc
Confidence            457789999999999999864322111 5899983  3321   111    01223455554433   599999999999


Q ss_pred             CeeeEEEEeeccC-CcEEeCCCeEEEEec
Q psy9140          80 YIRYYCQTTHKLT-GERKISPPSQVMVSE  107 (114)
Q Consensus        80 gg~Y~C~a~n~l~-~~~~~s~~a~L~V~~  107 (114)
                       |.|.|.+...-. ....-...++|.|++
T Consensus        82 -a~YyCa~~~~~~~~~~~FG~GT~L~V~p  109 (110)
T d2esvd1          82 -AVYYCIVVRSSNTGKLIFGQGTTLQVKP  109 (110)
T ss_dssp             -EEEEEEEEESCSSCCCCCCCCEEEEEEC
T ss_pred             -eEEEEEEeCCCCCCccEECCCEEEEEEe
Confidence             599998864322 222224578999974

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.9e-09  Score=68.83  Aligned_cols=82  Identities=22%  Similarity=0.400  Sum_probs=52.1

Q ss_pred             cceeec-cceeEEEeCCeEEEEeec--CCCC--CCcc-eEEEeeCCeeee---eeee---------ccCCcEEEcc----
Q psy9140           8 SDYEIN-TGNTFVLRGNIAVLQCNI--PAYN--HNLL-LIAWLREGVSEA---RSII---------HSGGRYSITT----   65 (114)
Q Consensus         8 ~~~~v~-~~d~~v~~G~~AvL~C~~--~~~~--~~~~-~vsW~kd~~~~~---~~~~---------~~~~r~~v~~----   65 (114)
                      |+|+++ |++..|.+|.++.|+|..  +...  .... .+.|.+....-.   ....         .-.+|+.+..    
T Consensus         1 ~~~~~~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   80 (121)
T d2g5ra1           1 KDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQT   80 (121)
T ss_dssp             -CCEEECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGG
T ss_pred             CceEEEeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcC
Confidence            345544 456689999999999987  2211  1222 689998643221   0000         1146888753    


Q ss_pred             -CCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          66 -AGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        66 -~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                       +.+|.|++|+.+|+| .|.|.+...
T Consensus        81 ~~~sL~I~~v~~~DsG-~Y~C~v~~~  105 (121)
T d2g5ra1          81 KNCTLSIRDARMSDAG-RYFFRMEKG  105 (121)
T ss_dssp             TBCCEEECSCCGGGCE-EEEEEEEET
T ss_pred             CEEEEEECCCChHHCE-EEEEEEEeC
Confidence             346999999999995 999999763

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.90  E-value=7.7e-09  Score=66.66  Aligned_cols=91  Identities=16%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee--e-e----eeeccCCcEEEccC---CcEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE--A-R----SIIHSGGRYSITTA---GALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~--~-~----~~~~~~~r~~v~~~---G~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|........  .+.|+|-  +...  + .    ......+||.+..+   -.|.|++++.+|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~--~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYS--RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED   82 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCccc--ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence            456888899999999999987554333  5899983  2211  1 0    01123578988654   469999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++ .|.|.+.+.  +...-...++|+|+
T Consensus        83 sa-~YyCa~~~~--~~~~FG~GT~LtVk  107 (107)
T d1ospl1          83 VA-TYFCQQYWS--PPPTFGGGTKLEIK  107 (107)
T ss_dssp             CS-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             CC-cEEEeeccC--CCCeECCCEEEEEC
Confidence            95 999988754  23344668888885

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.90  E-value=7.8e-09  Score=66.64  Aligned_cols=96  Identities=15%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee---e-----eccCCcEEE--ccCC---cEEEee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS---I-----IHSGGRYSI--TTAG---ALHIRD   73 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~---~-----~~~~~r~~v--~~~G---~L~I~~   73 (114)
                      +.+..|.+..|.+|++|.|.|......... .+.|+|-  +....+.   .     ....+|+.+  ..++   .|.|++
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTY-YLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITA   80 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSC-EEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESS
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCc-cEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecc
Confidence            455678888999999999999853322222 5799882  3322110   0     112334444  3333   699999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcE-EeCCCeEEEEe
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGER-KISPPSQVMVS  106 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~-~~s~~a~L~V~  106 (114)
                      ++.+|+| .|.|.+....++.. .-...++|.|+
T Consensus        81 ~~~~Dsg-~YyCa~~~~~~~~~l~FG~GT~L~V~  113 (114)
T d2ak4d1          81 SQVVDSA-VYFCALSGFYNTDKLIFGTGTRLQVF  113 (114)
T ss_dssp             CCGGGCE-EEEEEEECSBTTSCCEECCCEEEEEE
T ss_pred             cccccCC-CceEeCCCCCCCCcCEECCCEEEEEE
Confidence            9999995 99998876544331 23557888885

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=5.9e-09  Score=66.91  Aligned_cols=90  Identities=17%  Similarity=0.320  Sum_probs=62.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Cee---eeee----eeccCCcEEEccCC---cEEEeecCCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVS---EARS----IIHSGGRYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~---~~~~----~~~~~~r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      .+|....+.+|++|.|.|....+...  .+.|+|-  +..   ++..    ......||.+..++   .|.|++++.+|+
T Consensus         5 tQp~s~~~~~G~svtL~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKASESVTS--RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eeCCeEEECCCCCEEEEEEeCCCCCc--cEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhC
Confidence            35667889999999999998554333  6899874  221   1110    01235688887654   699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                       |.|.|.+...  +...-...++|+||
T Consensus        83 -a~YyCa~~~~--~~~~FG~GT~LtVk  106 (106)
T d1lk3l1          83 -AIYFCQQSWN--GPLTFGAGTKLELK  106 (106)
T ss_dssp             -EEEEEEECSS--SSCEECCCEEEEEC
T ss_pred             -CCcccccccC--ccceECCCeEEEEC
Confidence             5999976643  33345668888885

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.86  E-value=9.4e-09  Score=66.75  Aligned_cols=95  Identities=24%  Similarity=0.305  Sum_probs=62.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCeeeeeee----------eccCCcEEEcc---CC--cEEEe
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVSEARSI----------IHSGGRYSITT---AG--ALHIR   72 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~~~~~~----------~~~~~r~~v~~---~G--~L~I~   72 (114)
                      .+..|....+.+|++|.|.|........+ .+.|+|  .+....+..          ....+||.+..   ++  .|.|.
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNP-DLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSC-CEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCC-cEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            34568888999999999999874332222 689987  233221100          12346998742   22  59999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCc-EEeCCCeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGE-RKISPPSQVMVS  106 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~-~~~s~~a~L~V~  106 (114)
                      +++.+|+ |.|.|.+....... ..-...++|.|+
T Consensus        82 ~~~~~Ds-g~YyCa~~~~~~~~~~~FG~GT~L~V~  115 (116)
T d1tvda_          82 PVRTEDS-ATYYCAFTLPPPTDKLIFGKGTRVTVE  115 (116)
T ss_dssp             SCCGGGC-EEEEEEEECTTTTCCEEECCCEEEEEE
T ss_pred             Ccccccc-ccceeeEecCCCCceeEECcCEEEEEE
Confidence            9999999 59999887643322 122557888885

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.86  E-value=1.8e-08  Score=65.04  Aligned_cols=94  Identities=16%  Similarity=0.240  Sum_probs=62.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCC-CcceEEEeeCC--eee---ee----eeeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNH-NLLLIAWLREG--VSE---AR----SIIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~-~~~~vsW~kd~--~~~---~~----~~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      .+|....+.+|.+|.|.|...++.. ....+.|+|..  +..   +.    ......+||....++   .|.|++++.+|
T Consensus         5 tQP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1           5 TQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAED   84 (112)
T ss_dssp             BCCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             cCCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcccc
Confidence            3588889999999999999755321 11158999832  221   11    011234677665433   59999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + |.|.|.+.+.-+....-...++|+|.
T Consensus        85 s-a~YyCa~~~~~~~~~~FG~GTkLtVl  111 (112)
T d1lgva1          85 E-ADYYCSSYDGSSTSVVFGGGTKLTVL  111 (112)
T ss_dssp             C-EEEEEEEECSSSSSEEEBCCEEEEEC
T ss_pred             C-EEEEEeeecCCCCCCEeCcCEEEEEC
Confidence            9 59999887654444344557788774

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.84  E-value=1e-08  Score=66.00  Aligned_cols=90  Identities=17%  Similarity=0.263  Sum_probs=60.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee-------eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS-------IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~-------~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +..|....|.+|++|.|.|........  .+.|+|-  ++...+.       ......||....++   .|.|++++.+|
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~--~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDD--DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCc--cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            355888889999999999987543333  6899863  3332110       11235688876444   49999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      + |.|.|.+.+.  ....-...++|.|
T Consensus        83 s-a~YyCa~~~~--~~~~FG~GT~LtV  106 (106)
T d1i8ka_          83 V-GDYYCLQSFN--VPLTFGCGTKLEI  106 (106)
T ss_dssp             C-EEEEEEECSS--SSCEECCCEEEEC
T ss_pred             C-EEEeEecCcc--ccCeECCCEEEEC
Confidence            9 5999987764  2223344666654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.6e-09  Score=64.81  Aligned_cols=91  Identities=13%  Similarity=0.035  Sum_probs=60.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |.+.+.| +..|..|.+++|.|..+..   .....|.|++....  ......+... ....++.|.+|+.+|+| .|+|.
T Consensus         8 PsLsa~P-~~~V~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~--~~~~~~~~~~~~~~a~F~l~~vt~~~~G-~Y~C~   80 (99)
T d1ucta1           8 PFISAKS-SPVIPLDGSVKIQCQAIRE---AYLTQLMIIKNSTY--REIGRRLKFWNETDPEFVIDHMDANKAG-RYQCQ   80 (99)
T ss_dssp             CCEEESS-CSEEETTCCEEEEECCCTT---CSEEEEEEEETTEE--EECSEECC----CCCEEEECSCCGGGCE-EEEEE
T ss_pred             CEEEecC-CCceeCCCeEEEEEcCCCC---CcEEEEEECCCcCc--eeccccccCCCCceEEEEecCCCHHHCc-eEEEE
Confidence            4466777 4679999999999998542   11678888765321  1111111111 12346999999999994 99999


Q ss_pred             EeeccCCcEEeCCCeEEEEe
Q psy9140          87 TTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        87 a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ..+... -...|.+..|.|+
T Consensus        81 y~~~~~-~S~~Sdpl~L~VT   99 (99)
T d1ucta1          81 YRIGHY-RFRYSDTLELVVT   99 (99)
T ss_dssp             EEETTT-EEEECCCEEEEEE
T ss_pred             EECCCc-ccCCCCCEEEEeC
Confidence            998643 3457889999885

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=2.9e-08  Score=64.41  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=60.2

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcc-eEEEee---CCeee--eeee----eccCCcEEEccC---CcEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLR---EGVSE--ARSI----IHSGGRYSITTA---GALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~k---d~~~~--~~~~----~~~~~r~~v~~~---G~L~I~~v~~~D~   79 (114)
                      +|....|.+|++|.|.|.........- .+.|+|   +..+.  +...    ....+||.+.-+   ..|.|++++.+|+
T Consensus         6 Q~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Ds   85 (110)
T d1oaql_           6 QESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDE   85 (110)
T ss_dssp             ECSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             eCCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCcccc
Confidence            345678999999999998754221111 489998   33321  1110    122468877533   3699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                       |.|.|.+...  +...-...++|+|.
T Consensus        86 -a~YyCa~~~~--~~~~FG~GT~LtVl  109 (110)
T d1oaql_          86 -AIYFCALWYS--NHLVFGGGTKLTVL  109 (110)
T ss_dssp             -EEEEEEEEET--TEEEECCCEEEEEC
T ss_pred             -EeEEEEcccC--CCCEECCCeEEEEC
Confidence             5999998763  34445667888875

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.1e-09  Score=66.11  Aligned_cols=91  Identities=13%  Similarity=-0.051  Sum_probs=60.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.+.++| +..|..|.++.|+|..+..   .....|.|++..... ......+.  ....++.|.+|+.+|+| .|+|..
T Consensus         5 PsLsa~P-~~~V~~G~~VTL~C~~~~~---~~~f~L~k~g~~~~~-~~~~~~~~--~~~a~F~i~~v~~~~~G-~Y~C~y   76 (95)
T d1olla1           5 PFIWAEP-HFMVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAV-DRPKPPER--INKVKFYIPDMNSRMAG-QYSCIY   76 (95)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEECCTT---CCEEEEEETTEEEEE-ECCSSCTT--CCEEEEEESSCCGGGCE-EEEEEE
T ss_pred             CEEEeeC-CCcccCCCcEEEEEecCCC---ccEEEEEECCCCcce-eEEccCCC--ccEEEEEEeeeecCCCc-eEEEEe
Confidence            4466777 5678999999999998542   116788999864210 00000000  01136999999999995 999998


Q ss_pred             eeccCCcEEeCCCeEEEEec
Q psy9140          88 THKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+... -...|.+..|.|+|
T Consensus        77 ~~~~~-~S~~Sd~leL~VTd   95 (95)
T d1olla1          77 RVGEL-WSEPSNLLDLVVTE   95 (95)
T ss_dssp             EETTE-ECCCCCCEEEEEES
T ss_pred             CCCCC-ccCCCCCEEEEEeC
Confidence            87532 23457788999976

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.83  E-value=3.9e-08  Score=63.41  Aligned_cols=95  Identities=24%  Similarity=0.371  Sum_probs=64.3

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe-----eeeee----eeccCCcEEEccC-----CcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV-----SEARS----IIHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~-----~~~~~----~~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      .+..|....+.+|++|.|.|..+.+...  .+.|+|-..     .|+..    .....+||.+.-+     -+|.|++++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~--~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~   80 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFS--NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ   80 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCS--EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCcc--CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccC
Confidence            4567889999999999999998654333  689997321     12211    1233567877432     249999999


Q ss_pred             CCCCCeeeEEEEeeccCCc--EEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGE--RKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~~  107 (114)
                      .+|+| .|.|.+...-.+.  ..-...++|.|.+
T Consensus        81 ~~Dsg-~Y~Ca~~~~~~~~~~~~FG~GT~L~V~p  113 (114)
T d2cdea1          81 LSDSA-SYICVVSDRGSTLGRLYFGRGTQLTVWP  113 (114)
T ss_dssp             GGGCS-EEEEEEECSCTTTCCEEECCCEEEEEEC
T ss_pred             hhhCc-ccceeeecCCCCcCEeEECCCCEEEEEC
Confidence            99995 9999998753322  1113467899874

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.83  E-value=2.5e-08  Score=64.02  Aligned_cols=91  Identities=14%  Similarity=0.245  Sum_probs=62.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC---Cee-ee-ee----eeccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE---GVS-EA-RS----IIHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd---~~~-~~-~~----~~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      .+..|....+.+|++|.|.|........  .+.|+|-   ... ++ ..    ......||.+..++   .|.|++++.+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~--~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~   80 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKK--YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPE   80 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCC--CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhccc
Confidence            3556888899999999999987543333  5899983   221 11 10    01224688886555   4999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |++ .|.|.+.+.   ...-...++|+|+
T Consensus        81 DsA-~YyCa~~~~---~~~FG~GT~LtVk  105 (106)
T d1a0ql1          81 DIA-TYYCLQYYN---LRTFGGGTKLEIK  105 (106)
T ss_dssp             GCS-EEEEEECSS---SCEECCCEEEEEC
T ss_pred             CCE-eEEEEEeCC---CCeECCCeEEEEc
Confidence            995 999998652   2234668889886

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.82  E-value=2.6e-08  Score=64.16  Aligned_cols=95  Identities=19%  Similarity=0.287  Sum_probs=62.4

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Cee---eeee----eeccCCcEEEc--c---CCcEEEeec
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVS---EARS----IIHSGGRYSIT--T---AGALHIRDT   74 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~---~~~~----~~~~~~r~~v~--~---~G~L~I~~v   74 (114)
                      .-...|.+..+.+|++|.|.|....+...  .+.|+|-  +..   ++..    .....+|+...  .   +-.|.|+++
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~--~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAIY--NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAAS   79 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCEE--EEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSC
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCccc--CCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecC
Confidence            45667999999999999999997553222  6899983  222   1110    01223455542  2   226999999


Q ss_pred             CCCCCCeeeEEEEeeccCCc--EEeCCCeEEEEe
Q psy9140          75 GMEDSYIRYYCQTTHKLTGE--RKISPPSQVMVS  106 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~  106 (114)
                      +.+|+ |.|.|.+....++.  ..-...++|+|+
T Consensus        80 ~~~Ds-g~YyCa~~~~~~~~~~~~FG~GT~l~V~  112 (113)
T d2bnqd1          80 QPGDS-ATYLCAVRPTSGGSYIPTFGRGTSLIVH  112 (113)
T ss_dssp             CGGGC-EEEEEEEEESSSSCCCCEECCCEEEEEE
T ss_pred             CCCCC-cEEeEeEecCCCCcccceECCCeEEEEE
Confidence            99999 59999998654332  112456788885

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.82  E-value=1.7e-08  Score=64.79  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-------eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-------IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-------~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|........  .+.|+|-.  +.....       ....+.||....++   .|.|++++.+|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGN--NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCc--ceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            356788889999999999987543333  68999843  222110       01235788886433   69999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + |.|.|.+.+.  ....-...++|+|+
T Consensus        83 s-a~YyCa~~~~--~~~~FG~GT~LtVk  107 (107)
T d1j1pl_          83 F-GMYFCQQANS--WPYTFGGGTKLEIK  107 (107)
T ss_dssp             C-EEEEEEECSS--SSCEECCCEEEEEC
T ss_pred             C-EEEEEEcCCC--CccEECCCeEEEEC
Confidence            9 5999987754  33344667888885

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1e-08  Score=65.28  Aligned_cols=77  Identities=21%  Similarity=0.350  Sum_probs=51.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--e---eeee----eeccCCcEEEc--c-CC--cEEEeecCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--S---EARS----IIHSGGRYSIT--T-AG--ALHIRDTGMED   78 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~---~~~~----~~~~~~r~~v~--~-~G--~L~I~~v~~~D   78 (114)
                      +++-..+.+|.+|.|+|..+........+.|.|...  .   ++..    .....+|+.+.  + +|  .|.|.|++.+|
T Consensus         2 ~~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           2 KAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREED   81 (108)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCC
Confidence            356678899999999999754332222678987422  1   1110    12234677763  2 33  59999999999


Q ss_pred             CCeeeEEEEeec
Q psy9140          79 SYIRYYCQTTHK   90 (114)
Q Consensus        79 ~gg~Y~C~a~n~   90 (114)
                      +| .|.|.+...
T Consensus        82 sG-~Y~C~v~~~   92 (108)
T d1hkfa_          82 SG-HYWCRIYRP   92 (108)
T ss_dssp             CE-EEEEEEECT
T ss_pred             CE-EEEEEEecC
Confidence            95 999998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.81  E-value=2.3e-08  Score=64.58  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=60.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCee---eeee-------eeccCCcEEEccC---CcEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVS---EARS-------IIHSGGRYSITTA---GALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~---~~~~-------~~~~~~r~~v~~~---G~L~I~~v~   75 (114)
                      ...|....|.+|++|.|.|....+..+  .+.|+|  .++.   ++..       ......++.+..+   ..|.|++++
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~--~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATP--YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH   81 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCC--CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc
Confidence            345667889999999999987544333  568987  2221   2110       0111234444433   369999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+ |.|.|.+... +....-...++|.|++.
T Consensus        82 ~~Ds-g~YyCa~~~~-~~~~~FG~GT~L~V~p~  112 (115)
T d1i9ea_          82 WSDS-AVYFCAVSGF-ASALTFGSGTKVIVLPY  112 (115)
T ss_dssp             GGGC-EEEEEEEEET-TEEEEECCCEEEEEECC
T ss_pred             cccc-ceecccccCC-CCCCEECCCEEEEEecC
Confidence            9999 5999987753 22223466899999853

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.80  E-value=6.8e-08  Score=61.91  Aligned_cols=96  Identities=17%  Similarity=0.348  Sum_probs=63.8

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eeee----eccCCcEEEc--c---CCcEEEee
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARSI----IHSGGRYSIT--T---AGALHIRD   73 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~~----~~~~~r~~v~--~---~G~L~I~~   73 (114)
                      |+.+..|....+.+|.+|.|.|....+..+  .+.|+|-  +...   +...    ....+||...  .   +-.|.|++
T Consensus         1 q~v~Q~p~s~~~~~G~svtl~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   78 (111)
T d1bd2d1           1 QQVKQNSPSLSVQEGRISILNCDYTNSMFD--YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVP   78 (111)
T ss_dssp             CCEECCCSEEEEETTSCEEEEEEECCTTCC--EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESS
T ss_pred             CceEccCCEEEEcCCCCEEEEEEeCCCCCC--eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECC
Confidence            345667888999999999999987554433  5788883  3222   1100    1124577653  2   23699999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ++.+|+ |.|.|.+... +....-...++|+|+.
T Consensus        79 ~~~~Ds-a~YyCa~~~~-~~~~~FG~GT~LtV~p  110 (111)
T d1bd2d1          79 SQPGDS-AVYFCAAMEG-AQKLVFGQGTRLTINP  110 (111)
T ss_dssp             CCGGGC-EEEEEEEESS-TTCEEECCCEEEEEEC
T ss_pred             Cccccc-EEEEeeccCC-CCCcEeCCCEEEEEEc
Confidence            999999 5999987743 2223345678999853

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=2.5e-08  Score=64.49  Aligned_cols=96  Identities=13%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeC--Cee--eeeee-------eccCCcEE-Ecc---CCcEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLRE--GVS--EARSI-------IHSGGRYS-ITT---AGALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd--~~~--~~~~~-------~~~~~r~~-v~~---~G~L~I~~v~   75 (114)
                      .+|....+.+|++|.|+|.........- .+.|+|.  ++.  ++...       ...+.++. ...   +-.|.|++++
T Consensus         4 tQP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   83 (117)
T d1dqta_           4 TQPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLR   83 (117)
T ss_dssp             ECCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCC
T ss_pred             ECCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCc
Confidence            4577778889999999999733222222 5889983  221  11100       11223332 222   2379999999


Q ss_pred             CCCCCeeeEEEEeeccCCc--EEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTGE--RKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~~~  108 (114)
                      .+|+ |.|.|.+.....+.  ..-...++|.|.||
T Consensus        84 ~~Ds-a~YyCa~~~~~~~~~~~~fG~GT~L~V~dp  117 (117)
T d1dqta_          84 AVDT-GLYLCKVELMYPPPYFVGMGNGTQIYVIDP  117 (117)
T ss_dssp             GGGC-EEEEEEEEEEESSSCEEEECSCEEEECCCC
T ss_pred             cccC-EeEEEEEecCcCCCceeEECCCEEEEEECC
Confidence            9999 59999887543332  23466899999987

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=4e-08  Score=63.39  Aligned_cols=91  Identities=16%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eee----eeccCCcEEEccC---CcEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARS----IIHSGGRYSITTA---GALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~----~~~~~~r~~v~~~---G~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|....+...  .+.|+|.  ++..   +..    ......|+....+   ..|.|++++.+|
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~--~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISG--YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESED   82 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCC--CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccC
Confidence            456888889999999999987544333  5899983  3321   110    1122456766543   479999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++ .|.|.+.+.  ....-...++|+|+
T Consensus        83 sa-~YyCa~~~~--~~~~FG~GT~LtVk  107 (107)
T d1c5cl1          83 FA-DYYCLQYAS--FPRTFGGGTKLEIK  107 (107)
T ss_dssp             CS-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             Ce-EEEEecCcC--CcCeECCCEEEEEC
Confidence            95 999987753  22234567888885

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=3e-08  Score=63.42  Aligned_cols=91  Identities=14%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee-------eeccCCcEEEcc---CCcEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS-------IIHSGGRYSITT---AGALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~-------~~~~~~r~~v~~---~G~L~I~~v~~~D   78 (114)
                      ...|....+.+|++|.|.|.......+  .+.|+|-  ++.....       ......||.+..   +..|.|++++.+|
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGT--YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD   82 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCC--ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence            356888889999999999997554333  5899973  2221110       112356887753   3469999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + |.|.|.+...  ....-...++|.|+
T Consensus        83 S-a~YyCa~~~~--~~~~FG~GT~L~Vk  107 (107)
T d1kcvl1          83 D-ADYYCGQSYS--SPLTFGGGTKLELK  107 (107)
T ss_dssp             C-EEEEEEECSS--SSCEECCCEEEEEE
T ss_pred             C-ceEEEEecCC--CceeECCCEEEEEC
Confidence            9 5999987653  33344668888886

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=2.6e-08  Score=64.04  Aligned_cols=91  Identities=15%  Similarity=0.278  Sum_probs=62.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eee----eeccCCcEEEccC---CcEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARS----IIHSGGRYSITTA---GALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~----~~~~~~r~~v~~~---G~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|........  .+.|+|-  +...   +..    .....+||....+   -.|.|++++.+|
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~~--~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   82 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDINS--YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED   82 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCCC--ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence            456888889999999999987554333  5799874  2221   110    0122468877543   369999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + |.|.|.+.+.  ....-...++|+|+
T Consensus        83 s-a~YyCa~~~~--~~~~FG~GTkLtVk  107 (107)
T d1d5il1          83 M-GIYYCLQYDE--FPYTFGSGTKLEIK  107 (107)
T ss_dssp             C-EEEEEEECSS--SSCEECCCEEEEEC
T ss_pred             C-EEEEeeeccC--CcceECCCEEEEEC
Confidence            9 5999987754  22234567888875

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.76  E-value=4.1e-08  Score=63.50  Aligned_cols=93  Identities=18%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCC-cc-eEEEeeC--Ceee---eee----eeccCCcEEEccCC---cEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHN-LL-LIAWLRE--GVSE---ARS----IIHSGGRYSITTAG---ALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd--~~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~~   76 (114)
                      +..|....+.+|++|.|.|........ .- .+.|+|.  ++..   +..    ......||....++   .|.|++++.
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            456888899999999999975322111 11 5899884  3322   110    01124688876443   599999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|+ |.|.|.+.+.  ....-...++|+|+
T Consensus        85 ~Ds-A~YyCa~~~~--~~~~FG~GT~LtVk  111 (111)
T d2gsia1          85 EDA-ATYYCSHIRE--LPRSSGGGTKLEIK  111 (111)
T ss_dssp             GGC-EEEEEEECSS--SSCEECCCEEEEEE
T ss_pred             cCC-ceEEEEECCC--CCCEECCCEEEEEC
Confidence            999 5999987654  23334567888886

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.76  E-value=6.1e-08  Score=62.35  Aligned_cols=90  Identities=21%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC-----Ceeeeee------------eeccCCcEEEc--c---CCcE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE-----GVSEARS------------IIHSGGRYSIT--T---AGAL   69 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd-----~~~~~~~------------~~~~~~r~~v~--~---~G~L   69 (114)
                      ..|....+.+|.+|.|.|........+ .+.|+|-     +..+.+.            ......||.+.  +   +..|
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLT-SIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSS-EEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCC-ceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            578888999999999999975422222 6899874     2222110            01124566542  2   2369


Q ss_pred             EEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          70 HIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        70 ~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .|.+++.+|+ |.|.|.+...  +...-...++|+|
T Consensus        82 ~I~~~~~~Ds-g~Y~Ca~~~~--~~~~fG~GT~L~V  114 (115)
T d2atpb1          82 SIMNVKPEDS-DFYFCATVGS--PKMVFGTGTKLTV  114 (115)
T ss_dssp             EECSCCGGGC-EEEEEEEECS--SCEEECCCEEEEE
T ss_pred             eecccCCCCC-cEEEEeEcCC--CCCEECcCEEEEE
Confidence            9999999999 5999988643  3434455777776

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.76  E-value=4.9e-08  Score=62.57  Aligned_cols=91  Identities=15%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--e---eeeee----eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--V---SEARS----IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~---~~~~~----~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|........  .+.|+|-.  +   .++..    ......||.+..++   .|.|++++.+|
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~--~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   81 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIET--WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDD   81 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCC--cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccC
Confidence            346888899999999999987543333  57999853  1   11111    01224588876433   59999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++ .|.|.+...  ....-...++|+|+
T Consensus        82 sa-~YyCa~~~~--~~~~FG~GT~LtVk  106 (106)
T d1op3k1          82 FA-TYHCQHYAG--YSATFGQGTRVEIK  106 (106)
T ss_dssp             CS-EEEEEEECS--SCEEECCCEEEEEC
T ss_pred             CC-cEeeeeCCC--CccEECCCEEEEEC
Confidence            95 999987753  33345668888885

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.76  E-value=5.2e-08  Score=62.74  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=60.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCC-CcceEEEeeC--Ceeeeee-------eeccCCcEEEccCC---cEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNH-NLLLIAWLRE--GVSEARS-------IIHSGGRYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~-~~~~vsW~kd--~~~~~~~-------~~~~~~r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      +|....|.+|.+|.|.|......- .. .+.|+|-  +......       .....+||....++   .|.|++++.+|+
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNN-DVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDE   84 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTS-CEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCC-cccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccC
Confidence            466788999999999998754321 11 5899974  2211100       11224678776543   699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + .|.|.+...-.....-...++|+|.
T Consensus        85 a-~YyCA~~~~~~~~~~FG~GT~ltVl  110 (111)
T d1rzfl1          85 A-DYYCGTWDSSLSAVVFGGGSKVTVL  110 (111)
T ss_dssp             S-EEEEEEEETTTTEEEEBCCEEEEET
T ss_pred             c-ceEEeecCCCCCCCEECCCeEEEEC
Confidence            5 9999887543333233456777774

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.75  E-value=6.4e-08  Score=62.17  Aligned_cols=94  Identities=18%  Similarity=0.296  Sum_probs=59.5

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eeee-----eccCCcEEEcc---C--CcEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARSI-----IHSGGRYSITT---A--GALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~~-----~~~~~r~~v~~---~--G~L~I~~v~   75 (114)
                      +..|....+.+|++|.|.|........+ .+.|+|-  +...   +...     ....+||.+..   +  ..|.|++++
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSC-EEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCC-CCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            3457788999999999999874332222 6899983  2221   1100     11235676642   2  259999999


Q ss_pred             CCCCCeeeEEEEeeccCCc---EEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKLTGE---RKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~---~~~s~~a~L~V~  106 (114)
                      .+|+ |.|.|.+....++.   ..-...++|.|+
T Consensus        82 ~~Ds-a~YyCa~~~~~~~~~~~~~FG~GT~L~V~  114 (115)
T d1fo0a_          82 IEDS-AVYFCAMRGDYGGSGNKLIFGTGTLLSVK  114 (115)
T ss_dssp             GGGC-EEEEEEEECCCTTCSSCEEECCCEEEEEE
T ss_pred             cccc-ccccceeecCCCCCcCeeEECCCEEEEEE
Confidence            9999 59999987543321   122346788885

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=3.5e-08  Score=64.59  Aligned_cols=95  Identities=15%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCee------eeeee-----------eccCCcEEEc-cCC
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVS------EARSI-----------IHSGGRYSIT-TAG   67 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~------~~~~~-----------~~~~~r~~v~-~~G   67 (114)
                      |...+.|++..+.+|++|.|.|.+.....+  .+.|+|  .+..      ++...           .....||... ++|
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQ--GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   79 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSS--CEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCC--CEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC
Confidence            567889999999999999999998554333  689987  1221      11100           0113467653 333


Q ss_pred             ---cEEEeecCCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          68 ---ALHIRDTGMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        68 ---~L~I~~v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                         .|.|.+++.+|+| .|.|.+.-.  ....-+....|.++.
T Consensus        80 ~~~~L~I~~~~~~Dsg-~YyCa~~~~--~~l~Fg~Gt~v~~~~  119 (122)
T d1nezg_          80 NKYVLTLNKFSKENEG-YYFCSVISN--SVMYFSSVVPVLQKV  119 (122)
T ss_dssp             TEEEEEESSCCGGGCE-EEEEEEEET--TEEEECCCEEEEECC
T ss_pred             CEeEEEEcccccCCCE-EEEeeEeCC--CCcEECCCeEEEEee
Confidence               5999999999995 999988642  333346677776654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.4e-08  Score=65.71  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=57.1

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---e--eee--------eeccCCcEEEccCC---cEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---E--ARS--------IIHSGGRYSITTAG---ALH   70 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~--~~~--------~~~~~~r~~v~~~G---~L~   70 (114)
                      ++++.|.+..+.+|++|.|.|......... .+.|+|-.  ..   +  ++.        ......||.+..++   .|.
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~-~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~   80 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTS-GCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLT   80 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCS-CEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCC-CEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcE
Confidence            578899999999999999999875432222 68999832  11   1  110        01224688876554   599


Q ss_pred             EeecCCCCCCeeeEEEEeec
Q psy9140          71 IRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        71 I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      |++++.+|+ |.|.|.+...
T Consensus        81 I~~l~~~Ds-g~YyCa~~~~   99 (114)
T d1akjd_          81 LSDFRRENE-GYYFCSALSN   99 (114)
T ss_dssp             ESSCCGGGC-EEEEEEEEET
T ss_pred             EccCCCCCC-EEEeEeEcCC
Confidence            999999999 5999998753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.75  E-value=1.3e-07  Score=60.61  Aligned_cols=92  Identities=21%  Similarity=0.309  Sum_probs=60.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ce---eeeee--------eeccCCcEEEcc-C---CcEEEeec
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GV---SEARS--------IIHSGGRYSITT-A---GALHIRDT   74 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~---~~~~~--------~~~~~~r~~v~~-~---G~L~I~~v   74 (114)
                      ..|....+.+|++|.|.|....   ....+.|+|-  ++   .++..        .....+||.... +   -.|+|+++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~---~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS---GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT---TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             ECCCeEEECCCCCEEEEEEECC---CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            4577888999999999998532   1127899882  22   11110        012245776642 2   25999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +.+|+ |.|.|.+...-..+..-...++|+|.|
T Consensus        81 ~~~Ds-a~YyCa~~~~~~~~~~FG~GT~LtV~d  112 (112)
T d1kgce1          81 QQEDS-AVYLCASSLGQAYEQYFGPGTRLTVTE  112 (112)
T ss_dssp             CGGGC-EEEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             CcCCC-EEEEEeeeCCCCCCcEECcCEEEEEeC
Confidence            99999 599998865322232335578899875

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.74  E-value=7e-08  Score=62.25  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=62.4

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeeee-------eccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSI-------IHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      ...|....+.+|++|.|.|....+..+  .+.|+|-  ++......       .....+|....++   .|.|++++.+|
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   82 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSISK--SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             EccCCeEEecCCCCEEEEEEccCCcCC--ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence            355788889999999999997543333  5788874  22211000       1124567776666   69999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++ .|.|.+.+.  ....-...++|+|+
T Consensus        83 sa-~YyCA~~~~--~~~~FG~GT~LtVk  107 (108)
T d1jhll_          83 FA-MYICQQHNE--YPWTFGGGTKLEIK  107 (108)
T ss_dssp             CS-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             ce-EEEEeeCCC--cccEECCCeEEEEc
Confidence            95 999977653  33345668888886

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.74  E-value=4.1e-08  Score=63.09  Aligned_cols=91  Identities=18%  Similarity=0.240  Sum_probs=61.7

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee--e-ee----eeccCCcEEEccC---CcEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE--A-RS----IIHSGGRYSITTA---GALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~--~-~~----~~~~~~r~~v~~~---G~L~I~~v~~~D   78 (114)
                      +..|....+-+|++|.|.|........  .+.|+|-  ++..  + ..    ......||....+   ..|.|++++.+|
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGT--NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED   82 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCC--ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence            445777889999999999987543333  5899984  2221  1 10    0122568887543   469999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++ .|.|.+...  ....-...++|+|+
T Consensus        83 sA-~YyCa~~~~--~~~~FG~GT~LtVk  107 (107)
T d1mexl1          83 LA-EYFCQQYNS--YPYTFGGGTKLEIK  107 (107)
T ss_dssp             CS-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             ce-eEEEeECCC--CCceECCCEEEEEC
Confidence            95 999987653  22234668888885

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.73  E-value=4.2e-08  Score=62.99  Aligned_cols=91  Identities=14%  Similarity=0.245  Sum_probs=62.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeee----eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARS----IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~----~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|........  .+.|+|-.  +.   ++..    ......||.+..++   .|.|++++.+|
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~--~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~D   84 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIK--YLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPED   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCC--cceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCc
Confidence            345888889999999999998543222  67899832  11   1110    01225688876554   59999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + |.|.|.+...  ....-...++|+|+
T Consensus        85 s-a~YyCA~~~~--~~~~FG~GT~LtVt  109 (109)
T d1bwwa_          85 I-ATYYCQQYQS--LPYTFGQGTKLQIT  109 (109)
T ss_dssp             C-EEEEEEECSS--SSCEECCCEEEEEC
T ss_pred             C-ceEEEeecCC--CccEECCCEEEEEC
Confidence            9 5999987753  33344567788774

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.73  E-value=8.7e-08  Score=62.40  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeCC--eeeeee-------eeccCCcEEEcc---CCcEEEeecCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLREG--VSEARS-------IIHSGGRYSITT---AGALHIRDTGMEDS   79 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~~~~~~-------~~~~~~r~~v~~---~G~L~I~~v~~~D~   79 (114)
                      +|....|.+|++|.|.|...+.. ..+ .+.|+|-.  +.....       .....+||.+..   +..|.|.+++.+|+
T Consensus         6 Q~ps~~v~~G~svtL~C~~s~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds   84 (114)
T d2rhea_           6 QPPSASGTPGQRVTISCTGSATDIGSN-SVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDE   84 (114)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTS-CEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCcEEeCCCCCEEEEEEECCccccCC-cccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccC
Confidence            44468899999999999875432 112 58899843  221100       012245787754   34799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                       +.|.|.+...-.....-...++|+|..
T Consensus        85 -A~YyCA~~~~~~~~~~FG~GT~LtVlg  111 (114)
T d2rhea_          85 -ADYYCAAWNDSLDEPGFGGGTKLTVLG  111 (114)
T ss_dssp             -EEEEEEEEETTTTEEEECCCEEEEECS
T ss_pred             -ceEEEeecCCCCCCCEECCCeEEEECC
Confidence             599998875433333445688999974

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.72  E-value=4.1e-08  Score=63.35  Aligned_cols=93  Identities=18%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Cee---eeee----eeccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVS---EARS----IIHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~---~~~~----~~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      .+..|....+.+|++|.|.|.......+  .+.|+|-  ++.   |+..    ......||....++   .|.|++++.+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~--~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   81 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYS--YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE   81 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCc--ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccccc
Confidence            3456888899999999999997543333  5899992  221   1110    01224688876443   5999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |+ |.|.|.+..... ...-...++|+|+
T Consensus        82 DS-a~YyCA~~~~~~-~~~FG~GT~LtVk  108 (109)
T d1mqkl_          82 DF-GSYYCQHHYGTP-PLTFGGGTKLEIK  108 (109)
T ss_dssp             GC-EEEEEEECSSSS-SCCBCCCEEEEEC
T ss_pred             CC-eeEEEeeeCCCC-CcEECCCEEEEEc
Confidence            99 599998875321 1123568889886

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.71  E-value=6.8e-08  Score=60.36  Aligned_cols=81  Identities=31%  Similarity=0.486  Sum_probs=52.8

Q ss_pred             CCeEEEEeecCCCCCCcceEEEeeC--Cee---eee---eeeccCCcEEEc--cCC---cEEEeecCCCCCCeeeEEEEe
Q psy9140          22 GNIAVLQCNIPAYNHNLLLIAWLRE--GVS---EAR---SIIHSGGRYSIT--TAG---ALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        22 G~~AvL~C~~~~~~~~~~~vsW~kd--~~~---~~~---~~~~~~~r~~v~--~~G---~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      |.+|.|.|.......+  .+.|+|-  +..   |+.   .....++||...  .++   +|.|++++.+|+ |.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~--~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Ds-g~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQ--SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDS-ATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCC--EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEE
T ss_pred             CccEEEEEEEccccCC--cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcC-ccceeeEe
Confidence            8899999997654333  7899872  221   111   112346788763  222   599999999999 59999987


Q ss_pred             eccCCcEEeCCCeEEEE
Q psy9140          89 HKLTGERKISPPSQVMV  105 (114)
Q Consensus        89 n~l~~~~~~s~~a~L~V  105 (114)
                      ..-.+...-...++|+|
T Consensus        78 ~~~~~~~~FG~GT~L~V   94 (94)
T d2gj6d1          78 TDSWGKLQFGAGTQVVV   94 (94)
T ss_dssp             SSTTSCCEECCCEEEEE
T ss_pred             cCCCCceEECcCEEEEc
Confidence            54333333455677765

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.71  E-value=8.6e-08  Score=60.92  Aligned_cols=94  Identities=20%  Similarity=0.405  Sum_probs=59.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eeee----eccCCcEEEc--cC---CcEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARSI----IHSGGRYSIT--TA---GALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~~----~~~~~r~~v~--~~---G~L~I~~v~~   76 (114)
                      +..|....+.+|.+|.|.|.......+  .+.|+|-  +...   +...    .....|+...  .+   -.|.|++++.
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~--~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP   80 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEE--EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCc--EEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC
Confidence            345888889999999999987543222  6899984  2221   1100    1123344442  22   2599999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +|++ .|.|.+...-+....-...++|.|..
T Consensus        81 ~Dsa-~YyCa~~~~~~~~~~FG~GT~L~V~P  110 (110)
T d1u3ha1          81 GDSA-TYFCAASANSGTYQRFGTGTKLQVVP  110 (110)
T ss_dssp             TSCS-EEEECCEESSSCCCCCCSCEEEEEEC
T ss_pred             CCce-eEeeeecCCCCCCCEECCCeEEEEEC
Confidence            9995 99998874322222235578888863

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.70  E-value=6.7e-08  Score=62.32  Aligned_cols=95  Identities=13%  Similarity=0.241  Sum_probs=61.5

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ce---eeeeee-----eccCCcEEEc--cC---CcEEEeec
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GV---SEARSI-----IHSGGRYSIT--TA---GALHIRDT   74 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~---~~~~~~-----~~~~~r~~v~--~~---G~L~I~~v   74 (114)
                      .+..|....+.+|++|.|.|........  .+.|+|-  ++   .|+...     .....||...  .+   -.|.|+++
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~--~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPP--YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSA   80 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSC
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCce--eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccc
Confidence            3456888899999999999997443222  6899983  11   122110     1123455552  12   25999999


Q ss_pred             CCCCCCeeeEEEEeeccCCc--EEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTGE--RKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~~  107 (114)
                      +.+|+ |.|.|.+.....+.  ..-...++|.|.+
T Consensus        81 ~~~Ds-a~YyCa~~~~~~~~~~~~FG~GT~L~V~p  114 (115)
T d1j8hd1          81 HMSDA-AEYFCAVSESPFGNEKLTFGTGTRLTIIP  114 (115)
T ss_dssp             CGGGC-EEEEEEEESSTTSCSCEEECCCEEEEEEC
T ss_pred             cccCC-ccceeeecCCCCCCcccEECCCEEEEEEe
Confidence            99999 59999997653322  2235578898874

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.70  E-value=4.7e-08  Score=62.56  Aligned_cols=91  Identities=24%  Similarity=0.336  Sum_probs=60.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eee----eeccCCcEEEccCC---cEEEeecCCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARS----IIHSGGRYSITTAG---ALHIRDTGMEDS   79 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~~~D~   79 (114)
                      ..|....+.+|.+|.|.|......... .+.|+|-  +...   +..    ......||....++   .|.|++++.+|+
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNN-KLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGG-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCc-cceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            457888899999999999864322111 5789985  2211   100    01224578776544   499999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + .|.|.+.+.  ....-...++|+|+
T Consensus        85 a-~YyCa~~~~--~~~~FG~GT~LtVk  108 (108)
T d2fx7l1          85 A-VYYCQQYGQ--SLSTFGQGTKVEVK  108 (108)
T ss_dssp             S-EEEEEECSS--SSCEECCCEEEEEC
T ss_pred             E-EEeeecCCC--CCCEECCCEEEEEC
Confidence            5 999988653  22234567888875

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.69  E-value=1.1e-07  Score=61.04  Aligned_cols=92  Identities=22%  Similarity=0.293  Sum_probs=62.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eee----eeccCCcEEEccCC---cEEEeecCCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARS----IIHSGGRYSITTAG---ALHIRDTGME   77 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~~~   77 (114)
                      .+..|.+..+.+|++|.|.|........  .+.|+|-  +...   ++.    ......||....++   .|+|++++.+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTS--ALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCc--cEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC
Confidence            4567899999999999999998543222  6788883  2221   110    11224588876444   5999999999


Q ss_pred             CCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          78 DSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |++ .|.|.+.+.  ....-...++|.|+
T Consensus        82 DsA-~YyCa~~~~--~~~~FG~GT~LtVk  107 (107)
T d1tjgl1          82 DFA-TYYCQQLHF--YPHTFGGGTRVDVR  107 (107)
T ss_dssp             GCS-EEEEEECSB--SSCEECCCEEEEEC
T ss_pred             cCc-eEEEEECcC--CcCeECCCEEEEEC
Confidence            995 999976653  22234557888885

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.69  E-value=5.2e-08  Score=63.03  Aligned_cols=93  Identities=15%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eee----eeccCCcEEEcc-----CCcEEEeecCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARS----IIHSGGRYSITT-----AGALHIRDTGME   77 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~----~~~~~~r~~v~~-----~G~L~I~~v~~~   77 (114)
                      ..|....+.+|++|.|.|.......+  .+.|+|.  +...   +..    ......||.+..     +-.|.|++++.+
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~--~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSP--FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSC--CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcC--CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            44667789999999999997544333  6899874  2211   110    112256777642     235999999999


Q ss_pred             CCCeeeEEEEeeccCC--cEEeCCCeEEEEec
Q psy9140          78 DSYIRYYCQTTHKLTG--ERKISPPSQVMVSE  107 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~  107 (114)
                      |+ |.|.|.+...-.+  ...-...++|.|++
T Consensus        84 Ds-g~YyCa~~~~~~~~~~~~FG~GT~L~V~p  114 (115)
T d1lp9e1          84 DS-ALYYCALFLASSSFSKLVFGQGTSLSVVP  114 (115)
T ss_dssp             GC-EEEEEEEEECSSSSCEEEECCCEEEEEEC
T ss_pred             cC-ccceEEEEcCCCCcCeeEECCCEEEEEEc
Confidence            99 5999987654222  12234578899874

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.5e-08  Score=63.42  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCee----eeeeee-------ccCCcE-EEccCC---cEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVS----EARSII-------HSGGRY-SITTAG---ALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~----~~~~~~-------~~~~r~-~v~~~G---~L~I~~v~   75 (114)
                      .+|.-..+.+|.+|.|+|.......... .+.|+|....    ++....       ..+.++ ....++   .|+|++++
T Consensus         4 tQP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   83 (118)
T d1i8lc_           4 AQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR   83 (118)
T ss_dssp             ECCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCC
T ss_pred             eCCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccc
Confidence            3566677889999999999733222212 5899995331    111100       011222 122333   69999999


Q ss_pred             CCCCCeeeEEEEeeccCCcE--EeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTGER--KISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~--~~s~~a~L~V~~~  108 (114)
                      .+|+ |.|.|.+.....+.-  .-...++|.|.||
T Consensus        84 ~~Ds-a~YyCa~~~~~~~~~~~~fG~GT~L~V~d~  117 (118)
T d1i8lc_          84 AMDT-GLYICKVELMYPPPYYLGIGNGAQIYVIDP  117 (118)
T ss_dssp             GGGC-EEEEEEEEEEESSSCEEEECCCEEEECCCC
T ss_pred             cCCC-EEEEEeEecccCCCceeEECCCEEEEEEcC
Confidence            9999 599998876544332  2366889999887

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.67  E-value=2.7e-07  Score=59.71  Aligned_cols=93  Identities=16%  Similarity=0.245  Sum_probs=61.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee--eee-----eeccCCcEEE--cc---CCcEEEeecC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE--ARS-----IIHSGGRYSI--TT---AGALHIRDTG   75 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~--~~~-----~~~~~~r~~v--~~---~G~L~I~~v~   75 (114)
                      .+..|....+.+|.+|.|.|...+. ..  .+.|+|-  ++..  +.-     .....+||.+  ..   +..|.|++++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~--~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   79 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FS--SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQ   79 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CS--CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-Cc--eEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCC
Confidence            4566888899999999999997442 12  6899882  2221  110     0122345443  32   3369999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      .+|+ |.|.|.+....+ ...-...++|+|++
T Consensus        80 ~~Ds-a~YyCa~~~~~~-~~~FG~GT~LtV~~  109 (115)
T d1ogad1          80 PGDT-GLYLCAGAGSQG-NLIFGKGTKLSVKP  109 (115)
T ss_dssp             GGGC-EEEEEEEECTTS-SEEECCCEEEEEEC
T ss_pred             ccce-eeEcccccCCCC-CcEECCCEEEEEec
Confidence            9999 599998875432 23446789999985

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.67  E-value=6.9e-08  Score=62.45  Aligned_cols=91  Identities=20%  Similarity=0.290  Sum_probs=60.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee-------eeccCCcEEEccCC---cEEEeecCCCCCC
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS-------IIHSGGRYSITTAG---ALHIRDTGMEDSY   80 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~-------~~~~~~r~~v~~~G---~L~I~~v~~~D~g   80 (114)
                      +|....+.+|++|.|.|........  .+.|+|.  ++.....       ......||....++   .|.|++++.+|+ 
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~--~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-   82 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSR--SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDE-   82 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGS--CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCc--ceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCC-
Confidence            4567889999999999996443222  5899974  3322110       01124577665444   699999999999 


Q ss_pred             eeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          81 IRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        81 g~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      |.|.|.+...-++...-...++|+|.
T Consensus        83 avYyCA~~~~~~~~~~FG~GTkLtVl  108 (109)
T d1w72l1          83 ADYYCQVWDSRTDHWVFGGGTDLTVL  108 (109)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC
T ss_pred             EEEEEEecCCCCCCcEECCCeEEEEC
Confidence            59999987654443334567788774

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.66  E-value=1.1e-07  Score=61.45  Aligned_cols=78  Identities=28%  Similarity=0.431  Sum_probs=52.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--CeeeeeeeeccCCcEEEcc---CC--cEEEeecCCCCCCeeeE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARSIIHSGGRYSITT---AG--ALHIRDTGMEDSYIRYY   84 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~~~~~~~r~~v~~---~G--~L~I~~v~~~D~gg~Y~   84 (114)
                      ..|....+.+|.+|.|.|......-+...+.|+|-  +..... .+..++||.+.-   +.  .|.|++++.+|+ |.|.
T Consensus         5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-a~Yy   82 (113)
T d1vesa_           5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ-SISIGGRYVETVNKGSKSFSLRISDLRVEDS-GTYK   82 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE-ECCCBTTEEEEEETTTTEEEEEECSCCGGGC-EEEE
T ss_pred             eeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeecccccee-eeeecccccceeECCCCceeeeecccccCCc-ceEe
Confidence            45888899999999999987432111116899873  222111 123467777642   22  699999999999 5999


Q ss_pred             EEEeecc
Q psy9140          85 CQTTHKL   91 (114)
Q Consensus        85 C~a~n~l   91 (114)
                      |.+....
T Consensus        83 Ca~~~~~   89 (113)
T d1vesa_          83 CQAFYSL   89 (113)
T ss_dssp             EEEEEEE
T ss_pred             eeeeccC
Confidence            9997543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.65  E-value=1.1e-07  Score=60.30  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=57.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeee--ee-----eeccCCcEEEccC---CcEEEeecCCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEA--RS-----IIHSGGRYSITTA---GALHIRDTGMEDS   79 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~--~~-----~~~~~~r~~v~~~---G~L~I~~v~~~D~   79 (114)
                      .+|....+.+|++|.|.|........  .+.|+|-.  ....  ..     ....+.||....+   -.|.|.+++.+|+
T Consensus         3 tQp~sl~~~~G~svtl~C~~~~~~~~--~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   80 (103)
T d8faba1           3 TQPPSVSVSPGQTARITCSANALPNQ--YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDE   80 (103)
T ss_dssp             BCCSEEEECTTSCEEEEEECTTGGGS--CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             CCCCeEEECCCCCEEEEEEeCCCCCC--CEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHC
Confidence            35668889999999999987543222  57999842  2211  00     0122457766543   3699999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                       |.|.|.+.+.  ....-...++|+|
T Consensus        81 -a~YyCA~~~~--~~~~FG~GT~LtV  103 (103)
T d8faba1          81 -ADYYCQAWDN--SASIFGGGTKLTV  103 (103)
T ss_dssp             -EEEEEEEEET--TEEEEBCCEEEEE
T ss_pred             -ceEEeeecCC--CCCEeCCCEEeEC
Confidence             5999987653  2222344556655

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.8e-08  Score=63.50  Aligned_cols=73  Identities=10%  Similarity=0.026  Sum_probs=49.7

Q ss_pred             EEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeee----eccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccC
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSI----IHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLT   92 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~----~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~   92 (114)
                      .+.+|..+.|.|.+.+...... .|+|.+++..+....    ...++.+.+.  ..|.+. ++.+|.|..|+|.|+|.++
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~--s~l~~~-~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS--LEVTFT-PVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEE--EEEEEC-CCGGGTTCEEEEEEEECSC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceee--EEEEcc-CChHHCCcEEEEEEEcCcC
Confidence            4789999999999965332222 799999988753211    1223445443  346654 6777887899999999876


Q ss_pred             C
Q psy9140          93 G   93 (114)
Q Consensus        93 ~   93 (114)
                      +
T Consensus        89 ~   89 (109)
T d1vcaa1          89 E   89 (109)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.64  E-value=7.1e-08  Score=62.20  Aligned_cols=93  Identities=18%  Similarity=0.269  Sum_probs=60.9

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCC-cc-eEEEeeC--Ceee---eeee----eccCCcEEEccCC---cEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHN-LL-LIAWLRE--GVSE---ARSI----IHSGGRYSITTAG---ALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~-~~-~vsW~kd--~~~~---~~~~----~~~~~r~~v~~~G---~L~I~~v~~   76 (114)
                      +..|....+.+|++|.|.|....+... .. .+.|+|-  ++..   +...    .....||....++   .|.|++++.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            345888889999999999976322111 11 5899984  3321   1110    1224588877655   699999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|+ |.|.|.+.+.  +...-...++|+|+
T Consensus        85 ~Ds-a~YyCa~~~~--~~~~FG~GT~L~Vk  111 (111)
T d1j05a_          85 DDV-ATYYCQQTNE--DPYTFGGGTKLEIK  111 (111)
T ss_dssp             GGC-EEEEEEECSS--SSCEECCCEEEEC-
T ss_pred             ccC-ccEEEeecCC--CccEECCCeEEEEC
Confidence            999 5999987753  33344567788775

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.64  E-value=2.7e-07  Score=59.04  Aligned_cols=92  Identities=16%  Similarity=0.267  Sum_probs=61.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eeee----eccCCcEEEc--c---CCcEEEeecCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARSI----IHSGGRYSIT--T---AGALHIRDTGM   76 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~~----~~~~~r~~v~--~---~G~L~I~~v~~   76 (114)
                      +..|....+.+|++|.|.|........  .+.|+|-  ++..   +...    .....||...  .   +-.|.|++++.
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~--~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~   81 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYP--ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE   81 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCC--EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCc--ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc
Confidence            445778899999999999987443323  6899982  2211   1110    1224577663  2   34699999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|+ |.|.|.+...- .+..-...++|.|+
T Consensus        82 ~Ds-a~YyCA~~~~~-~~~~FG~GT~L~V~  109 (110)
T d1ac6a_          82 SDS-AVYYCALSGGN-NKLTFGAGTKLTIK  109 (110)
T ss_dssp             GGC-EEEEEEEEETT-TEEEECCCEEEEEE
T ss_pred             CCC-cccceeecCCC-CCcEECCCeEEEEE
Confidence            999 59999887642 23333668889886

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.63  E-value=8.3e-08  Score=61.78  Aligned_cols=92  Identities=20%  Similarity=0.269  Sum_probs=62.2

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eeee----eccCCcEEEcc---CCcEEEeecCCCCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARSI----IHSGGRYSITT---AGALHIRDTGMEDS   79 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~~----~~~~~r~~v~~---~G~L~I~~v~~~D~   79 (114)
                      .+|....+.+|++|.|.|........  .+.|+|-  ++..   +...    ....+||.+..   +..|.|++++.+|+
T Consensus         4 tQP~s~~~~~G~svtl~C~~~~~~~~--~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Ds   81 (108)
T d1nfde1           4 IQPSSASVTVGETVKITCSGDQLPKN--FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE   81 (108)
T ss_dssp             ECCSEEEEETTSCCCEEEEETTGGGS--CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             ECCCeeEECCCCCEEEEEECCCCCCc--cEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCC
Confidence            45878889999999999987443222  5799883  3221   1110    11245888754   33799999999999


Q ss_pred             CeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + .|.|.+...-+....-...++|+|+
T Consensus        82 a-~YyCA~~~~~~~~~~FG~GT~L~Vl  107 (108)
T d1nfde1          82 A-AYYCLSSYGDNNDLVFGSGTQLTVL  107 (108)
T ss_dssp             S-EEEEEEEETTTTEEEECCCEEEEEE
T ss_pred             c-eEEEEeecCCCCCcEECCCeEEEEe
Confidence            5 9999887543343334568888886

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=2.1e-08  Score=64.45  Aligned_cols=91  Identities=16%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee-------eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS-------IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~-------~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|....+...  .+.|+|-  ++.....       ......||....++   .|.|++++.+|
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINN--FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED   82 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTT--CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCC--CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence            456888889999999999987544333  5899974  2321100       11224577665433   69999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      ++ .|.|.+...  ....-...++|.|+
T Consensus        83 sa-~YyCa~~~~--~~~~FG~GT~LtVk  107 (107)
T d3cx5k1          83 IA-TYFCQHHIK--FPWTFGAGTKLEIK  107 (107)
T ss_dssp             CS-EEEEEECSS--SSCEECCCCBCCBC
T ss_pred             CC-cEEeeeCCC--cccEECCCEEEEEC
Confidence            95 999976543  22233445566553

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.9e-08  Score=63.14  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=55.5

Q ss_pred             cccee-EEEeCCeEEEEeecCCC-CCCcceEEEeeC--Ceee--e-eee-------eccCCcEEEcc---CC--cEEEee
Q psy9140          13 NTGNT-FVLRGNIAVLQCNIPAY-NHNLLLIAWLRE--GVSE--A-RSI-------IHSGGRYSITT---AG--ALHIRD   73 (114)
Q Consensus        13 ~~~d~-~v~~G~~AvL~C~~~~~-~~~~~~vsW~kd--~~~~--~-~~~-------~~~~~r~~v~~---~G--~L~I~~   73 (114)
                      -|++. .|.+|+++.|.|...+. .... .+.|.|.  +...  + ...       ....+||.+..   .|  .|.|++
T Consensus         4 ~pe~~~~v~eG~svtl~C~~~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~   82 (113)
T d1smoa_           4 LTEEKYELKEGQTLDVKCDYTLEKFASS-QKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVN   82 (113)
T ss_dssp             ESEEEEECCTTCCEEEEEECCHHHHTTS-CEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECS
T ss_pred             eccCcEEEccCCCEEEEEEeCCCCCCCC-EEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEcc
Confidence            34554 46689999999986421 1122 6889984  2211  1 100       01235888742   33  499999


Q ss_pred             cCCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          74 TGMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      ++.+|+| .|.|.+.......-......+|.|
T Consensus        83 l~~~Dsg-~Y~Cav~~~~~~~~~~~~~~~L~V  113 (113)
T d1smoa_          83 LQVEDSG-LYQCVIYQPPKEPHMLFDRIRLVV  113 (113)
T ss_dssp             CCGGGCE-EEEEEECCTTSCCEECSCEEEEEC
T ss_pred             CCcccCc-eEEEEEECCCCCCEEEECCEEEEC
Confidence            9999995 999998765443333344666654

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.62  E-value=3.4e-07  Score=58.60  Aligned_cols=91  Identities=18%  Similarity=0.341  Sum_probs=60.8

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeee--------eeccCCcEEEccC----CcEEEeec
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARS--------IIHSGGRYSITTA----GALHIRDT   74 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~--------~~~~~~r~~v~~~----G~L~I~~v   74 (114)
                      ..|....+.+|++|.|.|..... ..  .+.|+|-.  ..   |+..        ....++||.....    -.|.|+++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HD--NLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CS--EEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-Cc--eEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            45888899999999999985332 12  78999742  21   1110        0122567877532    36999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +.+|+ |.|.|.+...- ....-...++|.|.|
T Consensus        81 ~~~Ds-a~YyCa~~~~~-~~~~FG~GT~LtVld  111 (111)
T d2esve1          81 ELEDS-GVYFCASSQDR-DTQYFGPGTRLTVLE  111 (111)
T ss_dssp             CGGGC-EEEEEEEESSS-SSCEECCCEEEEEES
T ss_pred             ccCCC-ceEEEeeeCCC-CccEECCCeEEEEeC
Confidence            99999 59999876432 222345678899875

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.60  E-value=3.3e-07  Score=58.74  Aligned_cols=95  Identities=14%  Similarity=0.186  Sum_probs=60.7

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeee--e-e----eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEA--R-S----IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~--~-~----~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +.+|....+.+|++|.|.|...+..... .+.|+|-  +..+.  . .    ......|+.+..++   .|+|++++.+|
T Consensus         2 t~qP~~~~~~~G~svtl~C~~s~~~~~~-~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           2 TTQPNSMESNEEEPVHLPCNHSTISGTD-YIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRD   80 (112)
T ss_dssp             EECCSEEEEETTSCEEEEEEESCCCTTC-CEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGG
T ss_pred             eECCCEEEECCCCCEEEEEEEeCCCccc-cEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccc
Confidence            3578889999999999999874432211 5899993  22221  1 0    01223577776544   59999999999


Q ss_pred             CCeeeEEEEeeccCCc---EEeCCCeEEEEec
Q psy9140          79 SYIRYYCQTTHKLTGE---RKISPPSQVMVSE  107 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~---~~~s~~a~L~V~~  107 (114)
                      + |.|.|.+....+..   ..-...++|+|+.
T Consensus        81 s-a~YyCa~~~~~~~~~~~~~FG~GT~LtV~p  111 (112)
T d1kgcd1          81 A-AVYYCILPLAGGTSYGKLTFGQGTILTVHP  111 (112)
T ss_dssp             C-EEEEEECCCCSTTCCCCCCCCCCEEEEEEC
T ss_pred             c-eeEeeeEecCCCCccccCEeCCCEEEEEEe
Confidence            9 59999875432211   1123467888853

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.58  E-value=4.2e-07  Score=58.87  Aligned_cols=92  Identities=20%  Similarity=0.255  Sum_probs=59.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee--e-ee---------eeccCCcEEEc-cCC---cEEEe
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE--A-RS---------IIHSGGRYSIT-TAG---ALHIR   72 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~--~-~~---------~~~~~~r~~v~-~~G---~L~I~   72 (114)
                      ...|....+.+|++|.|.|....+...  .+.|+|-  +..+  + ..         .....+||.+. .++   .|.|.
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   82 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNIH--TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT   82 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCCS--EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCccc--EEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence            345777889999999999987544223  7899983  3322  1 10         01125688875 233   59999


Q ss_pred             ecCCCCCCeeeEEEEeeccCCc---EEeCCCeEEEE
Q psy9140          73 DTGMEDSYIRYYCQTTHKLTGE---RKISPPSQVMV  105 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n~l~~~---~~~s~~a~L~V  105 (114)
                      +++.+|+ |.|.|.+...-+..   ..-...++|+|
T Consensus        83 ~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~GT~LtV  117 (118)
T d2ij0c1          83 SAHPEDS-GFYVCSALAGSGSSTDTQYFGPGTQLTV  117 (118)
T ss_dssp             SCCGGGC-EEEEEEEECSSCSSSCCCEECCCEEEEE
T ss_pred             ccccccC-ceEEEEEecCCCCCCcccEeCcCEEEEE
Confidence            9999999 59999986532211   11234567766

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.57  E-value=2.4e-07  Score=59.76  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCC--CCcc-eEEEeeCC--eee---eee----eeccCCcEEEccCC---cEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYN--HNLL-LIAWLREG--VSE---ARS----IIHSGGRYSITTAG---ALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~--~~~~-~vsW~kd~--~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~   75 (114)
                      +..|....+.+|++|.|.|...++.  ...- -+.|+|..  ...   +..    ......||....++   .|.|++++
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~   84 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE   84 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence            3457788899999999999864421  1111 68997743  321   110    01124577776544   59999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .+|+ +.|.|.....  ....-...++|.||
T Consensus        85 ~~Ds-AvYyCa~~~~--~~~~FG~GTkL~vK  112 (112)
T d1mjul1          85 AEDV-GVYYCLQHLE--YPFTFGAGTKLELK  112 (112)
T ss_dssp             GGGC-EEEEEEECSS--SSCEECCCEEEEEC
T ss_pred             ccCC-ceEEEEeCCC--CCcEECCCEEEEEC
Confidence            9999 5999954332  22233557788875

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.4e-07  Score=61.85  Aligned_cols=92  Identities=16%  Similarity=0.239  Sum_probs=63.7

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--ee---eeee----eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VS---EARS----IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~---~~~~----~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|....+...  .+.|+|-.  ..   ++..    ......||....++   .|.|++++.+|
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~--~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINN--YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPED   82 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBT--CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGG
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcc--eeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCC
Confidence            345777888999999999997554333  58999842  21   1110    11225688876555   59999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      ++ .|.|.+.+   +...-...++|+|+.+
T Consensus        83 sa-vYyCa~~~---~~~~FG~GT~LtV~~~  108 (119)
T d1f3rb2          83 VA-TYFCYQYN---NGYTFGAGTKLELKAA  108 (119)
T ss_dssp             CS-EEEEEEES---SSEEECCCCEECCSSS
T ss_pred             Ce-EEEeeccC---CCCeECCCeEEEEeCC
Confidence            95 99998764   2334566889998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.54  E-value=6.7e-07  Score=57.76  Aligned_cols=93  Identities=22%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCC--CCcc-eEEEeeC--Ceeeeeee-------eccCCcEEEccCC---cEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYN--HNLL-LIAWLRE--GVSEARSI-------IHSGGRYSITTAG---ALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~--~~~~-~vsW~kd--~~~~~~~~-------~~~~~r~~v~~~G---~L~I~~v~   75 (114)
                      +..|....+.+|++|.|.|.+....  .... -+.|++.  ++...+..       .....||....+|   .|.|++++
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE   84 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence            3458888999999999999853211  1111 5789874  33221110       1124678765433   49999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .+|+ |.|.|...+..  ...-...++|.|+
T Consensus        85 ~eDs-AvYYC~~~~~~--~~~FG~GTkLtVk  112 (112)
T d1ncwl1          85 AEDL-GVYYCWQGTHF--PYTFGGGTKLEIK  112 (112)
T ss_dssp             GGGC-EEEEEEECSSS--SCEECCCEEEEEE
T ss_pred             cCcC-EeEEEEcCCCc--ccEECCCeEEEEC
Confidence            9999 59999665432  2234557788885

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.54  E-value=5.5e-07  Score=57.77  Aligned_cols=93  Identities=19%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCe--ee--ee-e-------eeccCCcEEEcc----CCcEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGV--SE--AR-S-------IIHSGGRYSITT----AGALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~--~~--~~-~-------~~~~~~r~~v~~----~G~L~I~~v~   75 (114)
                      ..|....+.+|++|.|.|.... ...  .+.|+|-..  .+  +. .       .....++|....    +..|.|++++
T Consensus         4 QsP~~~~~~~G~svtl~C~~s~-~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQNL-NHD--AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEECS-CCS--EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             EcCCeEEEcCCCCEEEEEEEec-CCC--cEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            3577888999999999999742 112  789998422  11  11 0       001133454432    3469999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEecc
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVSEI  108 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~  108 (114)
                      .+|+ |.|.|.+...-+....-...++|+|.+.
T Consensus        81 ~~DS-a~YyCa~~~~~~~~~~FG~GT~LtV~~~  112 (114)
T d1ogae1          81 KNPT-AFYLCASSSRSSYEQYFGPGTRLTVTED  112 (114)
T ss_dssp             SCCC-EEEEEEEESSTTSCCEECCCEEEEEESC
T ss_pred             cCCc-eeEEEeeccCCCCccEECCCEEEEECCC
Confidence            9999 5999987754333333466889999854

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.53  E-value=1.3e-06  Score=55.75  Aligned_cols=92  Identities=18%  Similarity=0.250  Sum_probs=59.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEee--CCeeeeee----------eeccCCcEEEc-cCC---cEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLR--EGVSEARS----------IIHSGGRYSIT-TAG---ALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~k--d~~~~~~~----------~~~~~~r~~v~-~~G---~L~I~~v~   75 (114)
                      ..|....+.+|++|.|.|..... ..  .+.|+|  .++.....          ......||... +++   .|.|++++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~--~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HR--SVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE   80 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CC--EEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CC--EEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence            45778889999999999986432 12  789999  23322110          01224566553 322   59999999


Q ss_pred             CCCCCeeeEEEEeeccCC--cEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTG--ERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~--~~~~s~~a~L~V~~  107 (114)
                      .+|+ |.|.|.+...-.+  ...-...++|.|.|
T Consensus        81 ~~Ds-a~YyCA~~~~~~~~~~~~FG~GT~LtVld  113 (113)
T d2ntsp1          81 LGDS-ALYLCASSLADRVNTEAFFGQGTRLTVVE  113 (113)
T ss_dssp             GGGC-EEEEEEEESSSCSSCCCEECCCEEEEEES
T ss_pred             cccc-eeeeeeeeCCCCCCcEeEECCCeEEEEEC
Confidence            9999 5999988753221  11234577788864

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.52  E-value=3.2e-07  Score=58.96  Aligned_cols=95  Identities=22%  Similarity=0.355  Sum_probs=59.0

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee-e----ecc-CC-cEEE--cc--CCcEEEeecCC
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS-I----IHS-GG-RYSI--TT--AGALHIRDTGM   76 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~-~----~~~-~~-r~~v--~~--~G~L~I~~v~~   76 (114)
                      -+..|....+.+|++|.|.|.....  .. .+.|+|-  +...... .    ... +. +...  ..  +-.|.|++++.
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~--~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT--MR-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL   80 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC--CS-EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC--Cc-cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH
Confidence            4566889999999999999997532  12 6899882  2221110 0    011 11 1111  11  22599999999


Q ss_pred             CCCCeeeEEEEeeccCC-cEEeCCCeEEEEecc
Q psy9140          77 EDSYIRYYCQTTHKLTG-ERKISPPSQVMVSEI  108 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~~  108 (114)
                      +|+ |.|.|.+...-+. ...-...++|.|...
T Consensus        81 ~Ds-a~YyCa~~~~~~~~~~~FG~GT~L~V~p~  112 (113)
T d1h5ba_          81 EDS-GTYFCAAEASSGSWQLIFGSGTQLTVMPV  112 (113)
T ss_dssp             GGC-EEEEEEEECSSSSSSCEECCCEEEEEECC
T ss_pred             hHC-EEEEEEecCCCCCCeeEECcCEEEEEEeC
Confidence            999 5999988754222 123356889999754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.51  E-value=3.1e-07  Score=59.26  Aligned_cols=92  Identities=18%  Similarity=0.306  Sum_probs=60.2

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCC--C-cc-eEEEeeC--Ceee--e-e----eeeccCCcEEEccCC---cEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNH--N-LL-LIAWLRE--GVSE--A-R----SIIHSGGRYSITTAG---ALHIRDT   74 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~--~-~~-~vsW~kd--~~~~--~-~----~~~~~~~r~~v~~~G---~L~I~~v   74 (114)
                      +..|....+.+|++|.|.|...++..  . .- -+.|+|.  +...  + .    .....++||....++   .|.|+++
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l   84 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV   84 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence            34588888999999999997643210  1 11 4899984  2221  1 0    011224677765433   5999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +.+|+ |.|.|-+.+.   ...-...++|+|+
T Consensus        85 ~~~Ds-a~YyCA~~~~---~~~FG~GT~LtV~  112 (113)
T d1q9ra1          85 QAEDL-AVYYCKQSYN---LRTFGGGTKLEIK  112 (113)
T ss_dssp             CGGGC-EEEEEEECSS---SCEECCCEEEEEE
T ss_pred             ccCCC-eEEEecccCC---CCEECCCEEEEEe
Confidence            99999 5999987642   2234568888886

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.51  E-value=4.9e-07  Score=58.11  Aligned_cols=93  Identities=18%  Similarity=0.331  Sum_probs=61.6

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee--e-ee-------eeccCCcEEEc-c---CCcEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE--A-RS-------IIHSGGRYSIT-T---AGALHIRDT   74 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~--~-~~-------~~~~~~r~~v~-~---~G~L~I~~v   74 (114)
                      +..|....+.+|.+|.|.|..... ..  .+.|+|-.  ...  + ..       ......||.+. .   +..|.|+++
T Consensus         5 tQ~P~~~~~~~G~~v~l~C~~~~~-~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           5 VQSPRHIIKEKGGRSVLTCIPISG-HS--NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             EEECSEEEEETTCCCEEEEECCTT-CC--EEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             EEcCCEEEEeCCCCEEEEEEeCCC-CC--EEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            356888889999999999986432 22  68999853  211  1 10       01123577653 2   236999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      +.+|+ |.|.|.+....+....-...++|+|.|
T Consensus        82 ~~~Ds-a~YyCa~~~~~~~~~~FG~GT~LtV~e  113 (113)
T d1nfdb1          82 ELEDS-AMYFCASSLRWGDEQYFGPGTRLTVLE  113 (113)
T ss_dssp             CGGGC-EEECEEEESSSCSCCEECCCEEEEEES
T ss_pred             CcCCc-eeEEEEeecCCCCccEECCCeEEEEEC
Confidence            99999 599998875444443345688898875

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.50  E-value=3.9e-07  Score=57.78  Aligned_cols=89  Identities=19%  Similarity=0.316  Sum_probs=58.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eeeeee-------eeccCCcEEEccCC---cEEEeecCCCC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSEARS-------IIHSGGRYSITTAG---ALHIRDTGMED   78 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~~~~-------~~~~~~r~~v~~~G---~L~I~~v~~~D   78 (114)
                      +..|....+.+|++|.|.|..... ..  -+.|+|-.  +.....       ......+|....++   .|.|.+++.+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~~--~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   80 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-VN--YMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETED   80 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-CS--CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-CC--ccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCccc
Confidence            356888889999999999986432 22  46898843  211100       01124567665433   59999999999


Q ss_pred             CCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          79 SYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        79 ~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      + |.|.|.+...   ...-...++|+|+
T Consensus        81 s-a~YyCa~~~~---~~~FG~GT~LtVk  104 (104)
T d1yqvl1          81 A-ATYYCQQWGR---NPTFGGGTKLEIK  104 (104)
T ss_dssp             C-EEEEEEECSS---SCEECCCEEEEEC
T ss_pred             C-CeEEEEecCC---CCeECCCeEEEEC
Confidence            9 5999976542   2234568888885

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.50  E-value=7.2e-07  Score=58.49  Aligned_cols=92  Identities=16%  Similarity=0.320  Sum_probs=57.9

Q ss_pred             cceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Cee---eeee------e---eccCCcEEEcc--CC---cEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVS---EARS------I---IHSGGRYSITT--AG---ALHIRD   73 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~---~~~~------~---~~~~~r~~v~~--~G---~L~I~~   73 (114)
                      +....+.+|.+|.|.|.+.++. ..+ -+.|+|-  ++.   |+..      .   ....+||.+.-  +.   .|.|++
T Consensus         8 ~~s~t~~~g~t~~LsC~~sg~~~s~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~   86 (123)
T d1hxmb1           8 QISSTKTLSKTARLECVVSGITISAT-SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (123)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTS-CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCeEEeCCCCCEEEEEEEcCCCcccC-eEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccc
Confidence            3456677899999999985432 222 5789883  222   1110      0   01246998852  22   499999


Q ss_pred             cCCCCCCeeeEEEEeeccC---CcE-EeCCCeEEEEec
Q psy9140          74 TGMEDSYIRYYCQTTHKLT---GER-KISPPSQVMVSE  107 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n~l~---~~~-~~s~~a~L~V~~  107 (114)
                      ++.+|+ |.|.|.......   ... .-...++|+|.|
T Consensus        87 l~~~Ds-a~YyCA~~~~~~~~~~~~~~FG~GT~LtV~d  123 (123)
T d1hxmb1          87 VEKQDI-ATYYCALWEAQQELGKKIKVFGPGTKLIITD  123 (123)
T ss_dssp             CCGGGC-EEEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred             cccccC-cEEEEeeeCCCCCcCCccCEeCCCeEEEEEC
Confidence            999999 599998754321   111 125578888865

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=4.8e-07  Score=58.56  Aligned_cols=91  Identities=18%  Similarity=0.288  Sum_probs=58.1

Q ss_pred             cceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Cee---eeeee-------eccCCcEEEccC---C--cEEEeecC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVS---EARSI-------IHSGGRYSITTA---G--ALHIRDTG   75 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~---~~~~~-------~~~~~r~~v~~~---G--~L~I~~v~   75 (114)
                      .+...+.+|+++.|.|...++. ..+ ...|.|.  +..   ++...       ....+||.+..+   +  .|+|++++
T Consensus         2 e~~~~~~eG~svtl~C~ys~~~~~~~-~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~   80 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIMKYANS-QKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ   80 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHHHHTTS-EEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccCC-cEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccc
Confidence            3456788999999999985431 222 6789984  221   22111       011369998532   2  39999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      .+|+ |.|.|...+.-.+..-.-...+|.|.
T Consensus        81 ~eDs-a~YyCa~~~~~~~~~~~~~~~~L~Vs  110 (110)
T d1u9ka_          81 VTDS-GLYRCVIYHPPNDPVVLFHPVRLVVT  110 (110)
T ss_dssp             GGGC-EEEEEEEECTTSCCEECSCCEEEEEC
T ss_pred             cCCC-EEEEEEEeCCCCCCEEEECCEEEEEC
Confidence            9999 59999986654333233346777773

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.2e-07  Score=57.95  Aligned_cols=88  Identities=11%  Similarity=0.099  Sum_probs=58.9

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |.+.+.| +..|..|.+++|+|..+.....  ...|.||+....  .     +...- ...+..|.+|+.+|+| .|+|.
T Consensus         6 P~Lsa~P-~~~V~~G~~VTL~C~~~~~~~~--~f~L~k~g~~~~--~-----~~~~~~~~a~F~l~~v~~~~~G-~Y~C~   74 (96)
T d1ucta2           6 PFLSADR-GLVLMPGENISLTCSSAHIPFD--RFSLAKEGELSL--P-----QHQSGEHPANFSLGPVDLNVSG-IYRCY   74 (96)
T ss_dssp             CEEEESS-CSEECTTCCCEEEEECSSSCCS--EEEEEETTCSSC--C-----SEEECSSSEEEECCSCCGGGCE-EEEEE
T ss_pred             CEEEEeC-CCccCCCCeEEEEEeCCCCCce--EEEEEECCcccc--e-----EEcCCCcccEEEEeccccccCc-EEEEE
Confidence            3466778 5689999999999997432112  568999987421  1     11111 1357999999999995 99999


Q ss_pred             EeeccCCc--EEeCCCeEEEEe
Q psy9140          87 TTHKLTGE--RKISPPSQVMVS  106 (114)
Q Consensus        87 a~n~l~~~--~~~s~~a~L~V~  106 (114)
                      ........  ...|.+..|.|+
T Consensus        75 y~~~~~p~~~S~~Sd~leL~VT   96 (96)
T d1ucta2          75 GWYNRSPYLWSFPSNALELVVT   96 (96)
T ss_dssp             EECTTSTTEECCCCCCEEEEEC
T ss_pred             EEcCCCCCCccCCCCCEEEEEC
Confidence            87543211  234668888774

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.2e-07  Score=58.44  Aligned_cols=88  Identities=15%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.+.+.| +..|..|.+++|+|..+..   .....|.|||..-..  .....+    ...++.|.+|+.+|+| .|+|..
T Consensus         5 PsLsa~P-~~~V~~G~~VTL~C~~~~~---~~~f~L~Keg~~~~~--~~~~~~----~~a~F~i~~v~~~~~G-~Y~C~~   73 (93)
T d1olla2           5 PTLSVHP-GPEVISGEKVTFYCRLDTA---TSMFLLLKEGRSSHV--QRGYGK----VQAEFPLGPVTTAHRG-TYRCFG   73 (93)
T ss_dssp             CEEEEES-CSEEETTCEEEEEEECSSS---CSEEEEEEESSSCEE--EEEECS----SEEEEEEEECCGGGCE-EEEEEC
T ss_pred             CEEEEeC-CCcccCCCcEEEEECCCCC---CCEEEEEECCCccce--eecCCC----ceeEEEecccChhcCc-eEEEEe
Confidence            4466777 5779999999999998542   127789998874311  111111    1357999999999995 999976


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      ...-..-...|++-.|.|+
T Consensus        74 ~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          74 SYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             EEETTEECCCCCCEEEEEE
T ss_pred             ECCCCCcCCCCCCEEEEee
Confidence            5431111234668888875

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.44  E-value=9.1e-07  Score=57.06  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=59.2

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCC---CcceEEEeeCC--eee---eee----eeccCCcEEEccCC---cEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNH---NLLLIAWLREG--VSE---ARS----IIHSGGRYSITTAG---ALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~---~~~~vsW~kd~--~~~---~~~----~~~~~~r~~v~~~G---~L~I~~v~   75 (114)
                      +..|....+.+|++|.|.|.......   ....+.|+|-.  +..   +..    ......||....++   .|.|++++
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            45588889999999999998633211   11158998843  221   100    11225678775444   79999999


Q ss_pred             CCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          76 MEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      .+|+ |.|.|...+..  ...-...++|.|
T Consensus        86 ~~Ds-avYyCa~~~~~--~~~FG~GTkLtV  112 (113)
T d1n4xl_          86 AEDL-GIYYCFQGSHF--PPTFGGGTKLEI  112 (113)
T ss_dssp             GGGC-EEEEEEECSSS--SCEECCCEEEEE
T ss_pred             cccC-EEEEEEECCCC--CCEECCCEEEEE
Confidence            9999 59999665432  222355777776

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.44  E-value=4.5e-07  Score=58.60  Aligned_cols=77  Identities=25%  Similarity=0.402  Sum_probs=52.2

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--CeeeeeeeeccCCcEEEc-cCC----cEEEeecCCCCCCee
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEARSIIHSGGRYSIT-TAG----ALHIRDTGMEDSYIR   82 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~~~~~~~~~r~~v~-~~G----~L~I~~v~~~D~gg~   82 (114)
                      +..|....+.+|++|.|.|...... ... .+.|+|.  +..... ....++||... +++    .|.|++++.+|+ |.
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~-~i~WYrq~~g~~~~~-~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Ds-a~   79 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALG-STCWYRKKSGEGNEE-SISKGGRYVETVNSGSKSFSLRINDLTVEDG-GT   79 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCC-CEEEEEEETTSCCCE-ECCCBTTEEEEEETTTTEEEEEECSCCGGGC-EE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCC-ceEEEEeeccceeee-eeccCCcEeeEEecCCceeeeEecCCcCccC-EE
Confidence            4567788889999999999873321 111 6899983  121110 23356788764 222    699999999999 59


Q ss_pred             eEEEEeec
Q psy9140          83 YYCQTTHK   90 (114)
Q Consensus        83 Y~C~a~n~   90 (114)
                      |.|.+...
T Consensus        80 YyCA~~~~   87 (112)
T d1sq2n_          80 YRCGLGVA   87 (112)
T ss_dssp             EEEEECBT
T ss_pred             EeEEEecC
Confidence            99987754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.40  E-value=1.8e-06  Score=56.26  Aligned_cols=94  Identities=16%  Similarity=0.200  Sum_probs=57.0

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC-----eeeeeee--------eccCCcEEEc--cCC---cEEEeec
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG-----VSEARSI--------IHSGGRYSIT--TAG---ALHIRDT   74 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~-----~~~~~~~--------~~~~~r~~v~--~~G---~L~I~~v   74 (114)
                      .|....+.+|++|.|.|.+.+..-....+.|+|-.     +.|+...        ....+||.+.  ++.   .|.|+++
T Consensus         7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l   86 (120)
T d1ypzf1           7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (120)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence            34456677899999999874421111158999832     2222110        1123577764  333   3999999


Q ss_pred             CCCCCCeeeEEEEeeccCCc-EEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTGE-RKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~-~~~s~~a~L~V~~  107 (114)
                      +.+|++ .|.|.+....++. ..-...++|+|..
T Consensus        87 ~~~Dsa-~YyCA~~~~~~~~~~~FG~GT~LtV~p  119 (120)
T d1ypzf1          87 EEEDEA-IYYCSYGEGSSGFHKVFAEGTKLIVIP  119 (120)
T ss_dssp             CGGGCS-EEEEEECCTTTCCCCEECSCEEEEEEC
T ss_pred             ccccce-eEEEEEcCCCCCcccEECCCeEEEEEC
Confidence            999995 9999876432221 1224477888863

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.40  E-value=9.8e-08  Score=60.50  Aligned_cols=68  Identities=18%  Similarity=0.472  Sum_probs=49.5

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +.++++.|.|.+.+|-++.+.++|++||.....     +....++.|.+.  ..|.|..-+++.. ..|+|.+.|.
T Consensus        17 ~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~~-~~ytC~V~H~   89 (102)
T d1igtb4          17 MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMY--SKLRVEKKNWVER-NSYSCSVVHE   89 (102)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHTC-CCEEEEEECT
T ss_pred             hcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEE--EEEEECHHHcCCC-CEEEEEEEeC
Confidence            368899999999776544448999999876421     223567788775  5788876665554 5899999985

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.39  E-value=9.2e-07  Score=56.47  Aligned_cols=91  Identities=16%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             eccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeeeee-------eeccCCcEEEc--c---CCcEEEeecCC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEARS-------IIHSGGRYSIT--T---AGALHIRDTGM   76 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~~~-------~~~~~~r~~v~--~---~G~L~I~~v~~   76 (114)
                      .+|+...+.+|.+|.|.|...++. ... -+.|.|-  +......       .....+||...  .   +..|.|++++.
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~-~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~   83 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSN-YVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT   83 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCc-eEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc
Confidence            367788899999999999874421 111 4789884  3322110       01224677663  2   23699999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEe
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVS  106 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~  106 (114)
                      +|+ |.|.|.+.+.  ....-...++|+|.
T Consensus        84 ~Ds-a~YyCA~~~~--~~~~FG~GT~L~Vl  110 (111)
T d1cd0a_          84 EDE-ADYYCQSYDA--RNVVFGGGTRLTVL  110 (111)
T ss_dssp             GGC-EEEEEEEEET--TEEEEBCCEEEEEC
T ss_pred             ccC-cEEEEeeccC--CCCEECCCeEEEEC
Confidence            999 5999987653  22223557778774

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.39  E-value=2.3e-06  Score=54.44  Aligned_cols=89  Identities=18%  Similarity=0.293  Sum_probs=57.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eeee-------eccCCcEEE-c---cCCcEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARSI-------IHSGGRYSI-T---TAGALHIRDT   74 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~~-------~~~~~r~~v-~---~~G~L~I~~v   74 (114)
                      +..|....+.+|++|.|.|..... .+  .+.|+|-  +...   +...       .....||.. .   .+..|.|+++
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~~-~~--~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTNN-HN--NMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC-CS--EEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             EEeCCeEEEcCCCCEEEEEEECCC-cC--cEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            345888889999999999986431 22  6899993  2211   1100       001234443 2   2456999999


Q ss_pred             CCCCCCeeeEEEEeeccCCcEEeCCCeEEEE
Q psy9140          75 GMEDSYIRYYCQTTHKLTGERKISPPSQVMV  105 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V  105 (114)
                      +.+|+ |.|.|.+.+.  ....-...++|+|
T Consensus        82 ~~~Ds-a~YyCa~~~~--~~~~FG~GT~L~V  109 (110)
T d2aq2a1          82 TPSQT-SVYFCASGGG--GTLYFGAGTRLSV  109 (110)
T ss_dssp             CGGGC-EEEEEEEEET--TEEEECCCEEEEE
T ss_pred             CHhhC-EEEEEeeCCC--CCcEECCCEEEEE
Confidence            99999 5999988763  3333455777776

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.5e-07  Score=58.13  Aligned_cols=66  Identities=12%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +..|..++|.|.+.+|-++.+.++|+|||..+-.     .....|+-|.+.  -.|.   +..+|. +.|+|.+.|.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~--s~l~---v~~~~~-~~ytC~V~H~   86 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLL--YYTE---FTPTEK-DEYACRVNHV   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEE--EEEE---ECCCSS-CCEEEEEECT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEE--EEeE---ECCCCC-CEEEEEEEeC
Confidence            4579999999999887655458999999986520     112334444442  2333   345565 5999999995

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.7e-06  Score=54.63  Aligned_cols=89  Identities=11%  Similarity=0.072  Sum_probs=53.1

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCee---eeeee--------eccCCcEEE--ccCC---cEEEeecCCCCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVS---EARSI--------IHSGGRYSI--TTAG---ALHIRDTGMEDS   79 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~---~~~~~--------~~~~~r~~v--~~~G---~L~I~~v~~~D~   79 (114)
                      ..+.+|++|.|.|.......+.. .+.|++....   .+...        ....+||.+  .+++   .|+|++++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            35778999999999754332222 4567775331   11100        112344443  3333   699999999999


Q ss_pred             CeeeEEEEeeccCCcEE---eCCCeEEEEe
Q psy9140          80 YIRYYCQTTHKLTGERK---ISPPSQVMVS  106 (114)
Q Consensus        80 gg~Y~C~a~n~l~~~~~---~s~~a~L~V~  106 (114)
                       |.|.|.+.........   -...++|.|+
T Consensus        90 -avYyCa~~~~~~~~~~~~~fG~GT~L~V~  118 (118)
T d1yjdc1          90 -DIYFCKIEVMYPPPYLDNEKSNGTIIHVK  118 (118)
T ss_dssp             -EEEEEEEEEEESSSCEEBCCCCCEEEECC
T ss_pred             -eEEEEEEecccCCCcccccCCCCEEEEEC
Confidence             5999987765432211   2456777764

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.6e-07  Score=60.01  Aligned_cols=85  Identities=15%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             eeccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecC
Q psy9140           3 MGDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTG   75 (114)
Q Consensus         3 ~avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~   75 (114)
                      |+|..|.-.+.+.......+..|.|-|.+.+|.+..+.|+|++||..+...       ....|+.|.+.  ..|.|..-+
T Consensus         1 r~v~~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~   78 (107)
T d1c5cl2           1 RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKAD   78 (107)
T ss_dssp             CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHH
T ss_pred             CCCcCCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEE--EEEEECHHH
Confidence            455555544443222334578899999997765444489999999865210       11235677765  568887666


Q ss_pred             CCCCCeeeEEEEeec
Q psy9140          76 MEDSYIRYYCQTTHK   90 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~   90 (114)
                      ++. |..|+|.+.|.
T Consensus        79 W~~-~~~ytC~V~H~   92 (107)
T d1c5cl2          79 YEK-HKVYACEVTHQ   92 (107)
T ss_dssp             HTT-CCEEEEEEECT
T ss_pred             hCC-CCEEEEEEEEC
Confidence            544 35999999995

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.33  E-value=1.8e-06  Score=54.53  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.+.++| +..|..|.+++|+|..+..   .....|.|||....  ...... ..-.......|..+...|+ |.|+|..
T Consensus         7 PsLsa~P-~~~V~~G~~VTL~C~~~~~---~~~f~L~k~g~~~~--~~~~~~-~~~~~~~~f~~~~~~~~~~-G~Y~C~y   78 (99)
T d1nkra2           7 PSLSAQP-GPTVLAGENVTLSCSSRSS---YDMYHLSREGEAHE--RRLPAG-PKVNGTFQADFPLGPATHG-GTYRCFG   78 (99)
T ss_dssp             CEEEEES-CSEECTTCEEEEEEEESSC---CSEEEEEETTCSSC--EEEECE-EEETTEEEEEEEEEECCSC-EEEEEEE
T ss_pred             CEEEEeC-CCcccCCCeEEEEECCCCC---ccEEEEEECCCccc--cEEEcc-ccCCccEEEEEeccccccC-EEEEEEe
Confidence            4467888 6789999999999998542   11678999986421  111111 1111112468889999998 5999987


Q ss_pred             eeccCC--cEEeCCCeEEEEe
Q psy9140          88 THKLTG--ERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~--~~~~s~~a~L~V~  106 (114)
                      ...-..  -...|.+-.|.|+
T Consensus        79 ~~~~~p~~wS~~SdpLeL~VT   99 (99)
T d1nkra2          79 SFHDSPYEWSKSSDPLLVSVT   99 (99)
T ss_dssp             EETTEEEEECCCCCCEEEEEC
T ss_pred             ecCCCCCCccCCCCCEEEEEC
Confidence            653210  0123667777774

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.8e-07  Score=58.35  Aligned_cols=68  Identities=24%  Similarity=0.462  Sum_probs=48.8

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeee------eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA------RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~------~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +.++.+.|-|.+.+|-+..+.|+|++||..+.      .+....|+.|.+.  ..|.|..-++... ..|+|.+.|.
T Consensus        18 ~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~--S~L~v~~~~w~~~-~~ytC~V~H~   91 (102)
T d1q0xl2          18 LSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMAS--SYLTLTARAWERH-SSYSCQVTHE   91 (102)
T ss_dssp             HTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEEEEHHHHTTC-CEEEEEEEET
T ss_pred             hCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEE--EEEEECHHHhCCC-CEEEEEEEEC
Confidence            35778999999977754434899999988652      1223456778775  5688876665555 5999999995

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.9e-07  Score=56.94  Aligned_cols=91  Identities=19%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      |.+.++|. ..|..|.+++|+|..+-.   .......||+....  ....... .-....++.|.+|+.+|+| .|+|..
T Consensus         5 P~Lsa~Ps-~~V~~G~~VTL~C~~~~~---~~~f~L~keg~~~~--~~~~~~~-~~~~~a~F~i~~v~~~~~G-~Y~C~y   76 (96)
T d1ugna1           5 PTLWAEPG-SVITQGSPVTLRCQGGQE---TQEYRLYREKKTAP--WITRIPQ-ELVKKGQFPIPSITWEHTG-RYRCYY   76 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTT---CCCEEEEESSSCCH--HHHTSCH-HHHTTTEEEESSCCGGGCE-EEEEEE
T ss_pred             CEEEeECC-CccCCCCcEEEEEeCCCC---CCEEEEEECCCCcc--cEEEccC-CCCCEEEEEEEecCHHHCC-eEEEEE
Confidence            34567774 678999999999997431   11557778876310  0000000 0012358999999999995 999998


Q ss_pred             eeccCCcEEeCCCeEEEEe
Q psy9140          88 THKLTGERKISPPSQVMVS  106 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V~  106 (114)
                      ...-..-...|.+-.|.|+
T Consensus        77 ~~~~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          77 GSDTAGRSESSDPLELVVT   95 (96)
T ss_dssp             EETTTEECCCCCCEEEEEE
T ss_pred             eCCCCCccccCCCEEEEEe
Confidence            6542221235667788875

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.30  E-value=7.4e-07  Score=56.66  Aligned_cols=75  Identities=21%  Similarity=0.267  Sum_probs=48.7

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      ...+.|.. .+..|..+.|.|.+.+|-++.+.++|+|||..+..      +....|+.|.+.  ..|.|.   .+|. +.
T Consensus         5 ~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~--s~l~v~---~~~~-~~   77 (100)
T d1muja1           5 QATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKL--SYLTFI---PSDD-DI   77 (100)
T ss_dssp             EEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEE--EEEEEC---CCTT-CC
T ss_pred             EEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEE--EEeEEc---CCCC-CE
Confidence            34454443 34578999999999877554459999999987521      012334556554  245443   4555 49


Q ss_pred             eEEEEeec
Q psy9140          83 YYCQTTHK   90 (114)
Q Consensus        83 Y~C~a~n~   90 (114)
                      |+|++.|.
T Consensus        78 ytC~V~H~   85 (100)
T d1muja1          78 YDCKVEHW   85 (100)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999996

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-07  Score=59.66  Aligned_cols=69  Identities=23%  Similarity=0.415  Sum_probs=49.2

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+.|+.+.|-|.+.+|.++.+.++|++||..+..      +....|+.|.+.  ..|.|..-++... ..|+|.+.|.
T Consensus        17 ~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~~-~~ytC~V~H~   91 (102)
T d1rzfl2          17 ELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWKSH-RSYSCQVTHE   91 (102)
T ss_dssp             HHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEE--EEEEECHHHHHHS-SCEEEEEEET
T ss_pred             HhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEE--EEEEECHHHhCCC-CEEEEEEEEC
Confidence            3468889999999887554458999999986521      112346777775  4678776665544 4899999995

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.27  E-value=8.5e-06  Score=52.83  Aligned_cols=96  Identities=22%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee--e-ee----eeccCCcEEEc--cC---CcEEEeec
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE--A-RS----IIHSGGRYSIT--TA---GALHIRDT   74 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~--~-~~----~~~~~~r~~v~--~~---G~L~I~~v   74 (114)
                      ...+++...|.+|++|.|.|...+.. ..+ .+.|+|-  ++.+  + ..    .....+||.+.  .+   -.|.|+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~-~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~   82 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNY-YINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGS-EEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCC-cCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence            34567777899999999999985431 222 6899983  2211  1 10    01113688654  22   37999999


Q ss_pred             CCCCCCeeeEEEEeeccCC-----cEEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTG-----ERKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~-----~~~~s~~a~L~V~~  107 (114)
                      +.+|+ |.|.|.....-.+     ...-...++|+|..
T Consensus        83 ~~~Ds-a~YyCA~~~~~~~~~~~~~~~FG~GT~ltV~p  119 (120)
T d1hxma1          83 SERDE-GSYYCACDTLGMGGEYTDKLIFGKGTRVTVEP  119 (120)
T ss_dssp             CGGGC-EEEEEEEECCCCSSSCCCCCEEBCCEEEEEEC
T ss_pred             cccCC-ceeecCcccCCCCCcCccCCEECCCcEEEEEe
Confidence            99999 5999986653211     11123456777764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=5.7e-06  Score=52.69  Aligned_cols=92  Identities=18%  Similarity=0.307  Sum_probs=57.6

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeee---ee-------eccCCcEEEc-c---CCcEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEAR---SI-------IHSGGRYSIT-T---AGALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~---~~-------~~~~~r~~v~-~---~G~L~I~~v~   75 (114)
                      ..|....+.+|++|.|.|....  ... .+.|+|-  +....+   ..       ....+|+... .   +-.|.|.+++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~--~~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDM--NHE-YMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESS--CCS-EEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             ECCCeEEECCCCCEEEEEEEEC--Ccc-ceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            4577788999999999998632  122 7899983  322210   00       0112444443 2   2369999999


Q ss_pred             CCCCCeeeEEEEeeccC-CcEEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLT-GERKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~-~~~~~s~~a~L~V~~  107 (114)
                      .+|+ |.|.|.+...-+ ....-...++|+|.|
T Consensus        81 ~~Ds-avYyCA~~~~~~~~~~~FG~GT~LtVle  112 (112)
T d2bnub1          81 PSQT-SVYFCASSYVGNTGELFFGEGSRLTVLE  112 (112)
T ss_dssp             GGGC-EEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred             HHHC-EEEEEeecCCCCCCccEECCCEEEEEeC
Confidence            9999 599998763211 222235577888865

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.1e-06  Score=55.38  Aligned_cols=65  Identities=15%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..|..+.|.|.+.+|-++.+.|+|++||..+-.     .....|+.|.+.  ..|.|   ..++. +.|+|.+.|.
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~--s~l~v---~~~~~-~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYIL--AHTEF---TPTET-DTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEE--EEEEE---CCCSS-CCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEE--EEeEe---cCcCC-CEEEEEEEeC
Confidence            368889999999887554448999999986521     112345555553  34554   34554 5999999995

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.23  E-value=4.2e-06  Score=53.28  Aligned_cols=92  Identities=13%  Similarity=0.275  Sum_probs=58.1

Q ss_pred             eccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCC--eee--ee-e-------eeccCCcEEEc----cCCcEEEeecC
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREG--VSE--AR-S-------IIHSGGRYSIT----TAGALHIRDTG   75 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~--~~~--~~-~-------~~~~~~r~~v~----~~G~L~I~~v~   75 (114)
                      ..|....+.+|++|.|.|..... ..  .+.|+|-.  ..+  +. .       ......++...    .+..|.|.+++
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~~-~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTMG-HD--KMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR   79 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETTC-CS--EEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred             ECCCEEEECCCCCEEEEEEEeCC-cc--cEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence            45777889999999999986321 12  68999832  221  10 0       00112344442    24569999999


Q ss_pred             CCCCCeeeEEEEeeccCCc--EEeCCCeEEEEec
Q psy9140          76 MEDSYIRYYCQTTHKLTGE--RKISPPSQVMVSE  107 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~~--~~~s~~a~L~V~~  107 (114)
                      .+|++ .|.|.+...-++.  ..-...++|+|.|
T Consensus        80 ~~Dsa-~YyCA~~~~~~~~~~~~FG~GT~LtV~d  112 (112)
T d2cdeb1          80 PSHTS-QYLCASSENIGTAYEQYFGPGTRLTVTE  112 (112)
T ss_dssp             TTTCS-EEEEEEECSSSSCCBCCCCCCEEEEEES
T ss_pred             ccccc-cEEEEEecCCCCcCeeEECCCeEEEEcC
Confidence            99995 9999887543221  1224477888865

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.4e-06  Score=54.77  Aligned_cols=65  Identities=18%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..++.+.|.|.+.+|-++.+.|+|+|||..+...       ....++-|.+.     ..-.+..+|. ..|+|.+.|.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~-----s~l~v~~~~~-~~ytC~V~H~   84 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGW-----ITLAVPPGEE-QRYTCQVEHP   84 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEE-----EEEEECTTCG-GGEEEEEECT
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEE-----EEEEECCCCC-CEEEEEEEeC
Confidence            3577899999998875554599999999875210       01122333332     2223455665 5999999995

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.3e-07  Score=57.45  Aligned_cols=69  Identities=16%  Similarity=0.324  Sum_probs=48.4

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ...++.|.|-|.+.+|-...+.++|++||..+..       +....++.|.+.  ..|.|..-++... ..|+|.+.|.
T Consensus        16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~g-~~ytC~V~H~   91 (105)
T d1fp5a2          16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF--SRLEVTRAEWEQK-DEFICRAVHE   91 (105)
T ss_dssp             SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEE--EEEEECHHHHTTG-GGEEEEEECT
T ss_pred             HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEE--EEEEECHHHcCCC-CEEEEEEEEC
Confidence            3457789999999766443348999999986521       112346677765  4788876666554 5999999995

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.7e-07  Score=58.29  Aligned_cols=84  Identities=19%  Similarity=0.328  Sum_probs=53.5

Q ss_pred             eccccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------e-eeccCCcEEEccCCcEEEeecCC
Q psy9140           4 GDMSSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------S-IIHSGGRYSITTAGALHIRDTGM   76 (114)
Q Consensus         4 avv~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~-~~~~~~r~~v~~~G~L~I~~v~~   76 (114)
                      |-..|.-.+.|.....+.++.+.|-|.+.+|.+..+.|+|.+||..+..      + ....++.|.+.  ..|.|..-++
T Consensus         2 ~~~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W   79 (107)
T d1mjul2           2 ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEY   79 (107)
T ss_dssp             CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHH
T ss_pred             CCcCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEE--EEEEECHHHh
Confidence            3344444444333333457889999999776544348999999886521      0 11345677665  4677776665


Q ss_pred             CCCCeeeEEEEeec
Q psy9140          77 EDSYIRYYCQTTHK   90 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~   90 (114)
                      ... ..|+|.+.|.
T Consensus        80 ~~g-~~ytC~V~H~   92 (107)
T d1mjul2          80 ERH-NSYTCEATHK   92 (107)
T ss_dssp             HTC-CEEEEEEECT
T ss_pred             CCC-CEEEEEEEEC
Confidence            444 5999999985

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.22  E-value=1.9e-06  Score=54.69  Aligned_cols=76  Identities=17%  Similarity=0.296  Sum_probs=48.5

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      |.-.+.|... +..|..++|.|.+.+|-++.+.|+|++||..+-.      +....|+.|.+.  -.|.|..   ++. .
T Consensus         6 P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~--S~L~v~~---~~~-~   78 (101)
T d1fnga1           6 PEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKF--HYLTFLP---STD-D   78 (101)
T ss_dssp             CEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEE--EEEEECC---CTT-C
T ss_pred             CeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEE--EEeEEcC---CCC-C
Confidence            4444444332 3467889999999887554448999999986521      112345566654  2566543   444 4


Q ss_pred             eeEEEEeec
Q psy9140          82 RYYCQTTHK   90 (114)
Q Consensus        82 ~Y~C~a~n~   90 (114)
                      .|+|.+.|.
T Consensus        79 ~ytC~V~H~   87 (101)
T d1fnga1          79 FYDCEVDHW   87 (101)
T ss_dssp             CEEEEEECT
T ss_pred             EEEEEEEEC
Confidence            899999995

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=4.9e-07  Score=57.14  Aligned_cols=67  Identities=12%  Similarity=0.365  Sum_probs=47.8

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+++|.|.|.+.+|-...+.++|++|+.....     +....|+.|.+.  ..|.|..-++.. |..|+|.+.|.
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~--S~L~v~~~~w~~-~~~ytC~V~H~   89 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY--SKLNVKKETWQQ-GNTFTCSVLHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEE--EEEEECHHHhCC-CCEEEEEEEeC
Confidence            46789999999776544348999999986531     233456777765  567777766554 45899999995

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=3.2e-07  Score=60.24  Aligned_cols=70  Identities=17%  Similarity=0.321  Sum_probs=51.6

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee-----------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS-----------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~-----------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      ...+..+.|-|.+.+|....+.|+|++||..+...           ....++.|.+.  ..|.|..-+++|.|..|+|.+
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~s--S~L~v~~~~W~~~g~~ytC~V   94 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLS--SRLRVSATFWQNPRNHFRCQV   94 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEE--EEEEEEHHHHTCTTCEEEEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEE--EEEEECHHHhCCCCCEEEEEE
Confidence            34578899999998775444489999998865210           01246788775  579998888888665899999


Q ss_pred             eec
Q psy9140          88 THK   90 (114)
Q Consensus        88 ~n~   90 (114)
                      .|.
T Consensus        95 ~H~   97 (127)
T d1ogae2          95 QFY   97 (127)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            985

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.6e-06  Score=53.90  Aligned_cols=80  Identities=14%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             ceeeccceeEEEeCCeEEEEeecCCCCCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140           9 DYEINTGNTFVLRGNIAVLQCNIPAYNHNLL-LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus         9 ~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      +|.-.|+-..+.+|+.++++|.+..   |.. +..|.++++.+    ...+..+.-.+.--..|.+++..|+| .|.|.|
T Consensus         7 ~~~~~p~~V~v~eg~~~vIPC~vT~---P~~~VtL~~~~~~~~----~p~g~~v~~Dpk~Gf~I~~~~~~~~g-~y~C~a   78 (95)
T d1fltx_           7 MYSEIPEIIHMTEGRELVIPCRVTS---PNITVTLKKFPLDTL----IPDGKRIIWDSRKGFIISNATYKEIG-LLTCEA   78 (95)
T ss_dssp             CCCSSCEEEEECTTSCEEECCCBSC---TTSCCEEEETTTEEE----CCCSSSEEEETTTEEEESSCCGGGCE-EEEEEE
T ss_pred             CCCCCCCEEEEeCCCCEEEEccCCC---CCceeEEEeccCCcc----CCCCCEEEECCCCCEEEeCCCcccCe-EEEEEE
Confidence            4555566678999999999999842   233 66787787753    23455666678888999999999995 999999


Q ss_pred             eeccCCcEEeC
Q psy9140          88 THKLTGERKIS   98 (114)
Q Consensus        88 ~n~l~~~~~~s   98 (114)
                      .-.  |+...|
T Consensus        79 ~~~--g~~~~S   87 (95)
T d1fltx_          79 TVN--GHLYKT   87 (95)
T ss_dssp             EET--TEEEEE
T ss_pred             EEC--CEEEEE
Confidence            763  655555

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.19  E-value=1.2e-05  Score=51.07  Aligned_cols=93  Identities=15%  Similarity=0.234  Sum_probs=58.3

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee--eeee--------eccCCcEEEc-cC---CcEEEeec
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE--ARSI--------IHSGGRYSIT-TA---GALHIRDT   74 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~--~~~~--------~~~~~r~~v~-~~---G~L~I~~v   74 (114)
                      +..|....+.+|++|.|.|.... ...  .+.|+|-  +..+  +...        .....++.+. ++   ..|.|+++
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~-~~~--~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   80 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDM-DHE--NMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESA   80 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESS-CCS--EEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEEcC-Ccc--EEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccC
Confidence            34577888999999999998532 122  6789883  2211  1100        0112444443 22   36999999


Q ss_pred             CCCCCCeeeEEEEeeccCC-cEEeCCCeEEEEec
Q psy9140          75 GMEDSYIRYYCQTTHKLTG-ERKISPPSQVMVSE  107 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V~~  107 (114)
                      +.+|+ |.|.|.+...-.. ...-...++|.|.|
T Consensus        81 ~~~Ds-a~YyCa~~~~~~~~~~~FG~GT~L~V~d  113 (113)
T d1j8he1          81 STNQT-SMYLCASSSTGLPYGYTFGSGTRLTVVE  113 (113)
T ss_dssp             CGGGC-EEEEEEEECTTSSSCCEEBCCEEEEEES
T ss_pred             ccCCc-ccEEeeEccCCCCCcCEECCCEEEEEeC
Confidence            99999 5999998753221 11235578888875

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.1e-06  Score=55.85  Aligned_cols=67  Identities=22%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeee-----eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEA-----RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~-----~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+.++.|-|.+.+|.++.+.++|++||..+.     .+....++.|.+.  ..|.|..-++... ..|+|.+.|.
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~--S~L~v~~~~w~~~-~~ytC~V~H~   91 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQ--SELTLSQKHWLSD-RTYTCQVTYQ   91 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEE--EEEEEEHHHHHTT-CCEEEEEEET
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEE--EEEEECHHHcCCC-CEEEEEEEEC
Confidence            4568899999977654434899999998763     1223456667664  5688877665554 5899999996

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.16  E-value=1.3e-07  Score=60.12  Aligned_cols=68  Identities=24%  Similarity=0.402  Sum_probs=50.5

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +.++.|.|-|.+.+|-++.+.|+|++|+..+..     +....++.|.+.  ..|.|..-++++.. .|+|.+.|.
T Consensus        18 ~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~--S~l~v~~~~w~~~~-~ytC~V~H~   90 (104)
T d1nfde2          18 LRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTS--SYLSLTADQWKSHN-RVSCQVTHE   90 (104)
T ss_dssp             HHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEE--EBCCEEHHHHHTCS-CEEEEEECT
T ss_pred             HcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEE--EEEEEcHHHcCCCC-EEEEEEEEC
Confidence            457889999999776443348999999987631     123457778775  57888877777764 899999996

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.15  E-value=3e-06  Score=53.33  Aligned_cols=76  Identities=17%  Similarity=0.332  Sum_probs=43.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee------eeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS------IIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~------~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      |.-.+.|... .-.|..+.|.|.+.+|-++.+.|+|++||..+...      ....|+-|.+.     .+-.+..++. .
T Consensus         5 P~V~l~~~~~-~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~-----s~l~~~~~~~-~   77 (98)
T d1d5mb1           5 PEVTVYPAKT-QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTL-----VMLETVPRSG-E   77 (98)
T ss_dssp             CEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEE-----EEEECCCCTT-C
T ss_pred             CEEEEECCCc-cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEE-----EEeeEcCCCC-C
Confidence            3444444332 33467788999998876554599999998865210      11234455443     2234566665 5


Q ss_pred             eeEEEEeec
Q psy9140          82 RYYCQTTHK   90 (114)
Q Consensus        82 ~Y~C~a~n~   90 (114)
                      .|+|.+.|.
T Consensus        78 ~ytC~V~H~   86 (98)
T d1d5mb1          78 VYTCQVEHP   86 (98)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEEEC
Confidence            999999996

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7e-06  Score=52.26  Aligned_cols=83  Identities=18%  Similarity=0.288  Sum_probs=57.0

Q ss_pred             eCCeEEEEeecCCCC-CCcc-eEEEeeC--Ceeee-e----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          21 RGNIAVLQCNIPAYN-HNLL-LIAWLRE--GVSEA-R----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~-~~~~-~vsW~kd--~~~~~-~----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      .|...-|  -+|.|. .+.+ .|.|.|.  +..+. +    +.....+.|.|+.||+|.|..+..+|+| +|.-.+.|+-
T Consensus        10 L~~di~l--dIP~fq~~~~iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nGtLkIK~L~~~d~G-tYkv~vYd~~   86 (101)
T d1hnfa1          10 LGQDINL--DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD-IYKVSIYDTK   86 (101)
T ss_dssp             TTSCEEE--CCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCE-EEEEEEEETT
T ss_pred             ccCCccc--cCCCccccCCcceeEEEecCCCcceeeecccCCCCCCCceEEEccCCcEEeeeeeecCCC-cEEEEEEcCC
Confidence            3444444  456665 3445 8999994  33332 1    2345577899999999999999999995 9999999984


Q ss_pred             CCcEEeCCCeEEEEec
Q psy9140          92 TGERKISPPSQVMVSE  107 (114)
Q Consensus        92 ~~~~~~s~~a~L~V~~  107 (114)
                       |.....-...|.|.|
T Consensus        87 -Gk~vlektf~LkI~E  101 (101)
T d1hnfa1          87 -GKNVLEKIFDLKIQE  101 (101)
T ss_dssp             -SCEEEEEEEEEEEEC
T ss_pred             -CcEeeeeeEEEEeeC
Confidence             433444466666653

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.6e-06  Score=51.90  Aligned_cols=72  Identities=13%  Similarity=0.258  Sum_probs=46.4

Q ss_pred             EEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCC-CCeeeEEEEeecc
Q psy9140          18 FVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMED-SYIRYYCQTTHKL   91 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D-~gg~Y~C~a~n~l   91 (114)
                      .......+.|-|.+.+|.+..+.++|.+++.....     +....++.|.+.  ..|.|..-++.- .+..|+|.+.|.-
T Consensus        17 ~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~eW~~~~~~~ytC~V~H~~   94 (105)
T d1dn0b2          17 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAAT--SQVLLPSKDVMAGTDEHVVCKVQHPN   94 (105)
T ss_dssp             ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEE--EEEEECTTCC---CCCEEEEEEECTT
T ss_pred             ccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEE--EEEEEcHHHhccCCCCEEEEEEEECC
Confidence            33456789999999887655459999999876531     223456677654  467777666532 1137999999963

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.14  E-value=1.5e-05  Score=50.58  Aligned_cols=92  Identities=21%  Similarity=0.316  Sum_probs=58.8

Q ss_pred             eeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee-----------eeccCCcEEEc--cCCcEEEeecC
Q psy9140          11 EINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS-----------IIHSGGRYSIT--TAGALHIRDTG   75 (114)
Q Consensus        11 ~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~-----------~~~~~~r~~v~--~~G~L~I~~v~   75 (114)
                      +..|....+.+|++|.|.|..+....+  .+.|+|-  ++.+.+.           ......||...  .+..|.|+.++
T Consensus         5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           5 EQNPRWRLVPRGQAVNLRCILKNSQYP--WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCC--EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             EeCCCeEEECCCCCEEEEEEEecCCCC--cEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            346778888899999999987554333  6899985  3322110           01124577764  35679999999


Q ss_pred             CCCCCeeeEEEEeeccCC-cEEeCCCeEEEE
Q psy9140          76 MEDSYIRYYCQTTHKLTG-ERKISPPSQVMV  105 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~l~~-~~~~s~~a~L~V  105 (114)
                      .+|+ +.|.|...-...+ ...-...++|.|
T Consensus        83 ~~ds-a~Y~Ca~~~~~~~~~~~FG~GT~LtV  112 (112)
T d1fo0b_          83 MSQG-RTLYCTCSADRVGNTLYFGEGSRLIV  112 (112)
T ss_dssp             CCSC-EEEEEEEESSSSSCCCEECCCEEEEC
T ss_pred             ccCC-ccEEEEEecCCCCCeeEeCCCEEEEC
Confidence            9999 5999986533222 222244556654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.13  E-value=3e-06  Score=53.51  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=44.1

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +..|..+.|.|.+.+|-++.+.|+|++||..+..      .....|+-|.+.  ..|.|.   .+|. ..|+|++.|.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~--s~l~v~---~~~~-~~ytC~V~H~   87 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKI--SYLTFL---PSAD-EIYDCKVEHW   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEEEC---CCTT-CCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEE--EEEEEc---CCCC-CEEEEEEEeC
Confidence            3468899999999887655458999999986521      012334555543  235554   4554 4899999995

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.12  E-value=3.8e-06  Score=53.56  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=44.7

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..|..++|-|.+.+|-.+.+.|+|++||..+..     +....++.|.+.  ..|.|   ..+|. ..|+|.+.|.
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~--S~L~v---~~~~~-~~ytC~V~H~   85 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAF--SYLNF---TPEPS-DIFSCIVTHE   85 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEE--EEEEE---CCCTT-CCEEEEEEET
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEE--EEEEE---ecCCC-CEEEEEEEeC
Confidence            468999999999887655459999999986421     112345556554  34554   44554 4899999996

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6e-07  Score=57.11  Aligned_cols=74  Identities=14%  Similarity=0.295  Sum_probs=49.7

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeee----------eeccCCcEEEccCCcEEEeecCCCCCCeee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS----------IIHSGGRYSITTAGALHIRDTGMEDSYIRY   83 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~----------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y   83 (114)
                      |.......|..|.|-|.+.+|-+..+.|+|++||..+-..          ....++.|.+.  ..|.|..-++.. |..|
T Consensus        12 p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~--S~L~v~~~~w~~-g~~y   88 (108)
T d1ow0a2          12 PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVT--SILRVAAEDWKK-GDTF   88 (108)
T ss_dssp             CCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEE--EEEEEEHHHHHH-TCCE
T ss_pred             CCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEE--EEEEEcHHHhCC-CCEE
Confidence            3333445788999999997764433489999999865210          01236677665  467777655544 4599


Q ss_pred             EEEEeec
Q psy9140          84 YCQTTHK   90 (114)
Q Consensus        84 ~C~a~n~   90 (114)
                      +|.+.|.
T Consensus        89 tC~V~H~   95 (108)
T d1ow0a2          89 SCMVGHE   95 (108)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            9999995

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.11  E-value=3.6e-06  Score=52.87  Aligned_cols=76  Identities=17%  Similarity=0.326  Sum_probs=43.6

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCe
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYI   81 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg   81 (114)
                      |.-.+.|... ...|+.++|-|.+.+|-++.+.|+|++||..+..      +....|+-|.+..  .|.   +..++. .
T Consensus         3 P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s--~l~---v~~~~~-~   75 (97)
T d1uvqb1           3 PTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILV--MLE---MTPQRG-D   75 (97)
T ss_dssp             CEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEE--EEE---CCSCTT-C
T ss_pred             CEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEE--Eec---cCCCCC-C
Confidence            3334444333 2357788999999887655459999999976521      1123455565542  244   455554 5


Q ss_pred             eeEEEEeec
Q psy9140          82 RYYCQTTHK   90 (114)
Q Consensus        82 ~Y~C~a~n~   90 (114)
                      .|+|.+.|.
T Consensus        76 ~ytC~V~H~   84 (97)
T d1uvqb1          76 VYTCHVEHP   84 (97)
T ss_dssp             CEEEEEECT
T ss_pred             EEEEEEEeC
Confidence            999999996

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-06  Score=55.26  Aligned_cols=67  Identities=16%  Similarity=0.404  Sum_probs=47.4

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .++.|.|-|.+.+|....+.++|++|+....-     +....|+.|.+.  ..|.|..-++.. |..|+|.+.|.
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~-g~~ytC~V~H~   89 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY--SKLTVDKSRWQQ-GNVFSCSVMHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEE--EEEEECHHHcCC-CCEEEEEEEeC
Confidence            57889999999776543349999999986421     123446777664  568877765544 45899999995

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=5.4e-06  Score=51.51  Aligned_cols=65  Identities=18%  Similarity=0.396  Sum_probs=44.2

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..|+.+.|-|.+.+|-+..+.|+|++|+..+..     +....++.|.+..  .|.|   ..+|. ..|+|.+.|.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s--~l~~---~~~~~-~~ytC~V~H~   82 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWV--VVAV---PPQDT-APYSCHVQHS   82 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEE--EEEE---CTTCC-SCEEEEEEET
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEE--EeEe---CCCCC-CEEEEEEEEC
Confidence            358899999999887555458999999986521     1123345565542  3443   45565 4999999995

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.09  E-value=5.4e-06  Score=52.29  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +..|+.++|-|.+.+|-++.+.++|++||..+.-      .....|+-|.+.  -.|.|   ..++. ..|+|.+.|.
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~--s~L~v---~~~~~-~~ytC~V~H~   85 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTL--SHLAL---TPSYG-DTYTCVVEHI   85 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEE--EEEEE---CCCTT-CCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEE--EEeEc---CCCCC-CEEEEEEEeC
Confidence            3457889999999887655559999999986520      012335556553  23554   45554 5999999996

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.08  E-value=2e-06  Score=53.23  Aligned_cols=60  Identities=13%  Similarity=0.248  Sum_probs=38.5

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeeee---eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEAR---SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~---~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +.+.|-|.+.+|-++.+.++|.++|..+-.   +....++.|....     +..+   +.+..|+|.+.|.
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s-----~~~~---~~~~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVK-----LGKY---EDSNSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEE-----EEEE---TTTTTCEEEEEET
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEE-----EEec---CCCCEEEEEEEEC
Confidence            457899999887655458999999886421   1233455554431     1222   2334899999995

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.3e-06  Score=55.15  Aligned_cols=67  Identities=18%  Similarity=0.452  Sum_probs=46.8

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeee-----eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEA-----RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~-----~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..+.|.|-|.+.+|-...+.++|++||..+.     .+....|+.|.+.  ..|.|..-++.. |..|+|.+.|.
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~-~~~ytC~V~H~   88 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVY--SKLNVQKSNWEA-GNTFTCSVLHE   88 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEE--EEEEECHHHhCC-CCEEEEEEEEC
Confidence            4678999999977643334899999998652     1223456777664  467776555444 45899999995

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=4.8e-06  Score=51.75  Aligned_cols=64  Identities=22%  Similarity=0.427  Sum_probs=42.9

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeee----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .++.+.|.|.+.+|-+..+.++|++||.....    .....++.|.+..  .|.|.   .+|. ..|+|++.|.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S--~l~v~---~~~~-~~ytC~V~H~   81 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWS--LLEVK---RGDE-HHYQCQVEHE   81 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEE--EEEEE---TTCG-GGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEE--EEEEC---CCCC-CEEEEEEEeC
Confidence            45689999999887655459999999986421    1123455555542  35553   4454 5999999985

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=8.2e-06  Score=51.24  Aligned_cols=79  Identities=14%  Similarity=0.190  Sum_probs=47.2

Q ss_pred             ccceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140           7 SSDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         7 ~~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .|.+.++| +..|..|.+++|+|..+..   .......|++....................+..|.+|+.+|+| .|+|.
T Consensus         4 kPsLsa~P-~~~v~~G~~VTL~C~~~~~---~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G-~Y~C~   78 (98)
T d1ugna2           4 KPTLSAQP-SPVVNSGGNVTLQCDSQVA---FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRW-WYRCY   78 (98)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEECSSC---CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCE-EEEEE
T ss_pred             CCEEEeeC-CCccCCCCcEEEEeCCCCC---CCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCe-EEEEe
Confidence            45677888 5679999999999998532   1156777887642100000000000000136999999999995 99998


Q ss_pred             Eeec
Q psy9140          87 TTHK   90 (114)
Q Consensus        87 a~n~   90 (114)
                      -...
T Consensus        79 y~~~   82 (98)
T d1ugna2          79 AYDS   82 (98)
T ss_dssp             EECT
T ss_pred             eEcC
Confidence            8755

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=5.4e-07  Score=56.60  Aligned_cols=70  Identities=21%  Similarity=0.379  Sum_probs=46.9

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceee---eee----eeccCCcEEEcc-----CCcEEEeecCCCCCCee
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSE---ARS----IIHSGGRYSITT-----AGALHIRDTGMEDSYIR   82 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~---~~~----~~~~~~r~~v~~-----~G~L~I~~v~~~D~gg~   82 (114)
                      ..|.+|++|.|.|.....  .. .+.|+|-  ++..   +..    .....+||.+..     +-.|.|.+++.+|++ .
T Consensus         3 lsV~eG~~vtL~C~~~~~--~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa-~   78 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS--IN-NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTA-S   78 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC--EE-EEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCS-C
T ss_pred             ceECCCCCEEEEEEEeCC--cc-cEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCE-E
Confidence            356689999999987431  11 7899882  2221   110    112356777642     136999999999995 9


Q ss_pred             eEEEEeec
Q psy9140          83 YYCQTTHK   90 (114)
Q Consensus        83 Y~C~a~n~   90 (114)
                      |.|.+...
T Consensus        79 YyCA~~~~   86 (96)
T d1ymmd1          79 YFCATDTT   86 (96)
T ss_dssp             CEEEEEET
T ss_pred             EeEeEecC
Confidence            99988764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.2e-05  Score=49.62  Aligned_cols=65  Identities=12%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..++.+.|.|.+.+|-+..+.|+|++||..+..      +....++.|.+.  -.|.|.   .+|. ..|+|.+.|.
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~---~~~~-~~ytC~V~H~   83 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKW--ASVVVP---LGKE-QYYTCHVYHQ   83 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEE--EEEEEE---SSTT-TTCEEEEECS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEE--EEEEec---CcCC-CEEEEEEEEC
Confidence            356789999999887655558999999986521      112445566554  346654   3444 3899999985

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.03  E-value=5.1e-06  Score=52.08  Aligned_cols=64  Identities=13%  Similarity=0.359  Sum_probs=44.6

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .++.+.|-|.+.+|-+..+.++|++|+..+..     +....|+.|.+.  -.|.|..   +|. ..|+|.+.|.
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~--S~L~v~~---~~~-~~ytC~V~H~   83 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLR--ATLDVAD---GEA-AGLSCRVKHS   83 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEE--EEEEEEG---GGC-TTEEEEEEEG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEE--EEEEEeC---ccC-CEEEEEEEeC
Confidence            46689999999887655448999999886521     123446667665  3466654   454 4899999995

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.02  E-value=1.1e-05  Score=50.67  Aligned_cols=91  Identities=14%  Similarity=0.165  Sum_probs=56.3

Q ss_pred             cceeeccceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEc-cCCcEEEeecCCCCCCeeeEEE
Q psy9140           8 SDYEINTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSIT-TAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus         8 ~~~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~-~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      |.+..+| +..|..|.+++|+|..+..   .....++||+.....  ........-. ...++.|.+|+.+|+| .|+|.
T Consensus         3 PsLsa~P-~~~V~~G~~VTl~C~~~~~---~~~f~L~keg~~~~~--~~~~~~~~~~~~~a~F~l~~v~~~~~G-~Y~C~   75 (96)
T d1nkra1           3 PSLLAHP-GPLVKSEETVILQCWSDVM---FEHFLLHREGMFNDT--LRLIGEHHDGVSKANFSISRMTQDLAG-TYRCY   75 (96)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEEESSC---CSEEEEEEESSSCEE--EEEECEEETTEEEEEEEESSCCGGGCE-EEEEE
T ss_pred             CEEEeeC-CCccCCCCcEEEEECCCCC---CCEEEEEECCCcCCc--eeeeeeecCCceEEEEEEcccCcccCe-EEEEE
Confidence            4456777 7889999999999998532   116788898763210  0000111000 0135999999999995 99998


Q ss_pred             EeeccCC--cEEeCCCeEEEE
Q psy9140          87 TTHKLTG--ERKISPPSQVMV  105 (114)
Q Consensus        87 a~n~l~~--~~~~s~~a~L~V  105 (114)
                      -......  -..-|.+-.|.|
T Consensus        76 y~~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          76 GSVTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             EEBTTBTTCCCCCCCCEEEEE
T ss_pred             EEcCCCCCcccCCCCCEEEEC
Confidence            8755321  112455766665

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.99  E-value=2.9e-06  Score=53.99  Aligned_cols=73  Identities=10%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEe
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTT   88 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~   88 (114)
                      |.-.....+.++.|-|.+.+|....+.++|++||..+..     +....++.|.+.  ..|.|..-++   +..|+|.+.
T Consensus        16 Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~--S~L~v~~~~w---~~~ytC~V~   90 (107)
T d1hxmb2          16 PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKF--SWLTVPEKSL---DKEHRCIVR   90 (107)
T ss_dssp             CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEE--EEEEECTGGG---GSCEEEEEE
T ss_pred             CCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEE--EEEEEecccC---CCeEEEEEE
Confidence            333345568899999999777544448999999886531     123446677664  4576655443   347999999


Q ss_pred             ecc
Q psy9140          89 HKL   91 (114)
Q Consensus        89 n~l   91 (114)
                      |.-
T Consensus        91 H~s   93 (107)
T d1hxmb2          91 HEN   93 (107)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            963

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1.1e-05  Score=50.69  Aligned_cols=67  Identities=19%  Similarity=0.460  Sum_probs=49.1

Q ss_pred             eCCeEEEEeecCCCC-CCcceEEEeeCCeeeee----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYN-HNLLLIAWLREGVSEAR----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~-~~~~~vsW~kd~~~~~~----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .++.+.|-|.+.+|. .+.+.+.|.+|+...-.    +....++.|.+.  ..|.|..-++... ..|+|.+.|.
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~~-~~ytC~V~H~   89 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMS--NQLTLPAVECPEG-ESVKCSVQHD   89 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEE--EEEEECGGGSCTT-CEEEEEEEET
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEE--EEEEEeHHHccCC-CEEEEEEEEC
Confidence            478899999998864 33337899998876521    124567788775  5788888876654 5899999995

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=3.4e-06  Score=53.17  Aligned_cols=67  Identities=18%  Similarity=0.342  Sum_probs=47.9

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeee---eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~---~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..++++.|-|.+.+|-...+.++|.+++...-   ++....++.|.+.  ..|.|..-++ +. +.|+|.+.|.
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~--S~L~v~~~~w-~~-~~ytC~V~H~   87 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLS--SNTTVASGTW-PS-ASVTCLVAHP   87 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEE--EEEEEETTTT-TT-SCCEEEEEEG
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEE--EEEEEchhhc-CC-CeEEEEEEeC
Confidence            46889999999977654444899999886431   2334557777764  4688776555 45 4899999996

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.92  E-value=1.2e-05  Score=50.55  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=42.2

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeee----------eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARS----------IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~----------~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ....+.|.|.+.+|-+..+.|+|+||+..+...          ....++-|.+.  ..|.|   ..++. ..|+|.+.|.
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~--s~l~v---~~~~~-~~ytC~V~H~   86 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKH--IDVYV---DGGLE-HVYSCRVKGI   86 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEE--EEEEE---CTTCG-GGEEEEEEEG
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEE--EEEEE---CCCCC-CEEEEEEEeC
Confidence            345789999998876555599999998754210          01335566554  34555   34444 5899999985

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.5e-06  Score=54.84  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCc-c-eEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNL-L-LIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~-~-~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~   82 (114)
                      |-..|.-..+..+.+|.|-|.+.+|.+.. . .+.|.+++.....     +....++.|.+.  ..|.|.--++ +.|..
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~~w-~~g~~   80 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVT--STLPVGTRDW-IEGET   80 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEE--EEEECCHHHH-HTTCC
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEE--EEEEEcHHHh-CCCCe
Confidence            34455444455789999999997654332 3 7889988876531     223456777664  4666654443 44469


Q ss_pred             eEEEEeec
Q psy9140          83 YYCQTTHK   90 (114)
Q Consensus        83 Y~C~a~n~   90 (114)
                      |+|.+.|.
T Consensus        81 ~tC~V~H~   88 (103)
T d1fp5a1          81 YQCRVTHP   88 (103)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEEC
Confidence            99999996

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.7e-05  Score=48.36  Aligned_cols=65  Identities=17%  Similarity=0.391  Sum_probs=43.0

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeee------eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR------SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~------~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..++.+.|.|.+.+|-...+.|+|++||..+..      +....++.|.+.  -.|.|   ..++. ..|+|.+.|.
T Consensus        13 ~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~--s~l~v---~~~~~-~~ytC~V~H~   83 (95)
T d1k5na1          13 ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKW--AAVVV---PSGEE-QRYTCHVQHE   83 (95)
T ss_dssp             EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEE--EEEEE---ETTCG-GGEEEEEECT
T ss_pred             CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEE--EEEEE---EcCCC-CEEEEEEEEC
Confidence            346789999999887655558999999986521      112334555443  23444   34454 4899999995

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=9.3e-06  Score=51.16  Aligned_cols=67  Identities=15%  Similarity=0.354  Sum_probs=45.2

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeee---eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~---~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..++.+.|-|.+.+|....+.++|.+++...-   .+....++.|.+.  ..|.|..-++ +.+ .|+|.+.|.
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~--S~L~v~~~~w-~~~-~ytC~V~H~   87 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVTSSTW-PSQ-SITCNVAHP   87 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE--EEEEECTTTT-TTS-CCEEEEEEG
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEE--EEEEEehhHc-CCc-eEEEEEEEC
Confidence            46889999999987765545899988774321   2234557788764  4677777766 454 899999996

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.4e-06  Score=52.24  Aligned_cols=69  Identities=14%  Similarity=0.322  Sum_probs=48.3

Q ss_pred             EEeCCeEEEEeecCCCCCCc-c-eEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNL-L-LIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~-~-~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ...+.++.|-|.+.+|.... . .++|.+++..+..     +....++.|.+.  ..|.|..-++... ..|+|.+.|.
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~g-~~ytC~V~H~   90 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV--SVLTVLHQDWLNG-KEYKCKVSNK   90 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEE--EEEECCHHHHHTT-CCEEEEEECT
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEE--EEEEEcHHHcCCC-CEEEEEEEeC
Confidence            44688999999997654433 2 7899999986531     123456777765  4677766655554 5999999996

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=8.1e-06  Score=51.42  Aligned_cols=67  Identities=13%  Similarity=0.229  Sum_probs=44.5

Q ss_pred             eCCeEEEEeecCCCCCCc--ceEEEeeCCeeeee-----eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNL--LLIAWLREGVSEAR-----SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~--~~vsW~kd~~~~~~-----~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+.+|.|-|.+.+|....  +.++|++|+.....     +....++.|.+.  ..|.|.--++.. |..|+|.+.|.
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~-g~~~tC~V~H~   88 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSV--SELPIVERDWLN-GKTFKCKVNSG   88 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEE--EEEECCHHHHHT-TCCEEEEEECS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEE--EEEEECHHHhcC-CCEEEEEEEeC
Confidence            577899999996543322  28899999886531     123446667664  456655544444 45899999996

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5.1e-05  Score=47.07  Aligned_cols=62  Identities=16%  Similarity=0.306  Sum_probs=42.2

Q ss_pred             eCCeEEEEeecCCC-CCCcceEEEeeCCeeeeee-----eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAY-NHNLLLIAWLREGVSEARS-----IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~-~~~~~~vsW~kd~~~~~~~-----~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .|+.+.|.|.+.++ +++  .|+|++|+..+...     ....++-|.+.  ..|.|.   ..+. ..|+|.+.|.
T Consensus        15 s~~~~~L~C~~~g~~P~~--~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~--S~L~v~---~~~~-~~~tC~V~h~   82 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEP--HLSWLENGEELNAINTTVSQDPETELYAVS--SKLDFN---MTTN-HSFMCLIKYG   82 (95)
T ss_dssp             STTEEEEEEEEEEESSCE--EEEEEESSCEECCSEEEEEECTTTCCEEEE--EEEEEE---TTSC-EEEEEEEEET
T ss_pred             CCCEEEEEEEECcccCCC--EEEEecCCcEecccceeeEecCCCccEEEE--EEEEcc---CCcc-ceEEEEEEec
Confidence            57889999999764 433  89999999865211     11235667665  356664   3444 5999999996

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.72  E-value=2e-06  Score=55.20  Aligned_cols=68  Identities=15%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeee---eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~---~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      +.++.|.|-|.+.+|.+..+.|+|.+++....   .+....|+.|.+.  ..|.|..-++. .|..|+|.+.|.
T Consensus        25 ~~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~-~~~~ytC~V~H~   95 (111)
T d1pfca_          25 LSKKKVSLTCMITGFYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLY--SRLKVDTDAWN-NGESFTCSVMHE   95 (111)
T ss_dssp             CCTTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEE--EEECCCSSCCH-HHHCCEEEEEET
T ss_pred             hcCCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcccEECCCCcEEEE--EEEEECHHHhC-CCCEEEEEEEeC
Confidence            35778999999977754444899999875432   2334567777775  45666544433 345899999995

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.70  E-value=4.9e-05  Score=49.78  Aligned_cols=70  Identities=21%  Similarity=0.386  Sum_probs=45.1

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcc-eEEEeeC--Ceeeeeee-----------eccCCcEEEcc--C---CcEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLL-LIAWLRE--GVSEARSI-----------IHSGGRYSITT--A---GALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~-~vsW~kd--~~~~~~~~-----------~~~~~r~~v~~--~---G~L~I~~v~~~   77 (114)
                      .+.+|+++.|.|.+.++. .... -+.|.|-  ++.+....           ..-.+||.+.-  +   -.|+|++++.|
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            456799999999974432 2222 5789973  22221100           01157998853  2   24999999999


Q ss_pred             CCCeeeEEEEe
Q psy9140          78 DSYIRYYCQTT   88 (114)
Q Consensus        78 D~gg~Y~C~a~   88 (114)
                      |+ +.|.|...
T Consensus        91 Ds-AvYyCAr~  100 (120)
T d2agjh1          91 DT-ATYYCART  100 (120)
T ss_dssp             GC-EEEEEEEE
T ss_pred             cc-eEEeeEec
Confidence            99 59999644

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.65  E-value=8.2e-05  Score=45.93  Aligned_cols=64  Identities=19%  Similarity=0.380  Sum_probs=41.0

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeee-----e--eeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEAR-----S--IIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~-----~--~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .++.+.|-|.+.+|-++.+.++|.+||..+..     .  ....++-|.+.  ..|.|.   .+|. ..|+|.+.|.
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~--s~l~v~---~~~~-~~ytC~V~H~   84 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTW--VATRIC---QGEE-QRFTCYMEHS   84 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEE--EEEEEE---TTCG-GGEEEEEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEE--EEEEEc---CCCC-CEEEEEEEEC
Confidence            35678999999887555459999999986521     0  01224445443  234443   4454 4899999985

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.64  E-value=4.7e-05  Score=49.01  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=46.0

Q ss_pred             EeCCeEEEEeecCCCCCC-cc-eEEEeeCCeeee-----eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          20 LRGNIAVLQCNIPAYNHN-LL-LIAWLREGVSEA-----RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~-~~-~vsW~kd~~~~~-----~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ..+.++.|-|.+.+|... .. .++|.+|+..+.     .+....++.|.+.  ..|.|.--++. .|..|+|.+.|.
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~eW~-~g~~ytC~V~H~  104 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVV--SALPIQHQDWM-SGKEFKCKVNNK  104 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEE--EEEECCHHHHH-TTCEEEEEEECT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEE--EEEEEeHHHhC-CCCeEEEEEEEC
Confidence            468899999999665332 22 789999998652     1123446677664  45666554444 445899999996

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0001  Score=45.96  Aligned_cols=76  Identities=14%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCC-CCCCeeeEEEEeeccCCcEEeC
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM-EDSYIRYYCQTTHKLTGERKIS   98 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~-~D~gg~Y~C~a~n~l~~~~~~s   98 (114)
                      +-|.+++|.|-  ....+  .|.|.|++..+   ....+..-.-...-.|.+.+-.+ +++ |.|.|.+.....    ..
T Consensus         8 ISGTtV~LTCP--~~~~~--~i~W~~n~~~~---~~~~~~~~~~~~~~~l~L~dfSe~e~s-GyY~C~~~~~~~----~~   75 (91)
T d1xiwa_           8 ISGTTVILTCP--QYPGS--EILWQHNDKNI---GGDEDDKNIGSDEDHLSLKEFSELEQS-GYYVCYPRGSKP----ED   75 (91)
T ss_dssp             EETTEEEEECS--SCTTS--CEEEEETTEEE---SSSCSCTTEEEETTEEEETTCCHHHHC-EEEEEEETTSCG----GG
T ss_pred             EeCCEEEEECC--CCCCC--ceeeeeccccc---cCCCcccccccccceEEecccCccccC-ceEEEEcCCCCC----CC
Confidence            47999999994  33223  79999998754   11111111111134577777766 788 599999975311    23


Q ss_pred             CCeEEEEec
Q psy9140          99 PPSQVMVSE  107 (114)
Q Consensus        99 ~~a~L~V~~  107 (114)
                      ....|.++.
T Consensus        76 ~~~~LYLKA   84 (91)
T d1xiwa_          76 ANFYLYLRA   84 (91)
T ss_dssp             CCEEEEEEE
T ss_pred             cceEEEEEe
Confidence            344566553

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=4.4e-07  Score=57.34  Aligned_cols=74  Identities=16%  Similarity=0.207  Sum_probs=45.4

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCc-ceEEEeeCCeeee---eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNL-LLIAWLREGVSEA---RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~-~~vsW~kd~~~~~---~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      |....+..|.+|.|.|.+.+|..|. +.|+|++++....   .+....++.|.+.  ..|.|..-++ +.|..|+|.+.|
T Consensus        10 Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~~W-~~g~~ftC~V~H   86 (101)
T d1ow0a1          10 PALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVS--SVLPGCAEPW-NHGKTFTCTAAY   86 (101)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEE--EECTTTHHHH-HHTCEEEEEECC
T ss_pred             CCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEE--EEEEEcHHHc-CCCCeEEEEEEe
Confidence            3333455789999999998864333 3899999876432   1122334555443  2344443333 334699999998


Q ss_pred             c
Q psy9140          90 K   90 (114)
Q Consensus        90 ~   90 (114)
                      .
T Consensus        87 ~   87 (101)
T d1ow0a1          87 P   87 (101)
T ss_dssp             S
T ss_pred             C
Confidence            6

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=0.00013  Score=47.57  Aligned_cols=73  Identities=18%  Similarity=0.401  Sum_probs=48.9

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccCC-----cEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTAG-----ALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~G-----~L~I~~v~   75 (114)
                      -..+.+|+++.|.|.+.++. ..+ -++|.|-  ++.+     |.+.       ..-.+||.+..+-     .|+|++++
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y-~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTEL-PVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCC-CEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            34567899999999986642 222 6788873  2222     1110       1236799886422     39999999


Q ss_pred             CCCCCeeeEEEEeec
Q psy9140          76 MEDSYIRYYCQTTHK   90 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~   90 (114)
                      .||+ +.|.|...+.
T Consensus        88 ~eDt-AvYYCA~~~~  101 (117)
T d1iqdb1          88 SDDT-AVYYCAVPDP  101 (117)
T ss_dssp             GGGC-EEEEEEECSS
T ss_pred             cCcc-eEEEEeEcCC
Confidence            9999 5999987653

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.53  E-value=0.00047  Score=44.80  Aligned_cols=75  Identities=23%  Similarity=0.488  Sum_probs=49.1

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC--C---cEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA--G---ALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~--G---~L~I~   72 (114)
                      +..-..+.+|+++.|.|.+.++. ..+ -++|.|-  ++.+     |.+.       ..-.+||.+.-+  .   .|+|+
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~~y-~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLTSY-LFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCSCC-EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccccCCCC-cCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            33445677899999999997642 222 6899874  2222     1110       112479988432  2   39999


Q ss_pred             ecCCCCCCeeeEEEEee
Q psy9140          73 DTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n   89 (114)
                      +++.||+ +.|.|....
T Consensus        84 sL~~eDt-AvYYCAr~~   99 (117)
T d1um5h1          84 SLTSEDS-AVYYCARSS   99 (117)
T ss_dssp             SCCGGGC-EEEEEEEEE
T ss_pred             ccCCCcc-eEEEEeecc
Confidence            9999999 599996543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.8e-05  Score=47.21  Aligned_cols=66  Identities=21%  Similarity=0.543  Sum_probs=45.1

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeee---e-eeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEA---R-SIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~---~-~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      .+.++.|-|.+.+|.+..+.++|.+++..--   + +....++.|.+.  -.|.|..-++. . ..|+|.+.|.
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~--S~L~v~~~~w~-~-~~ytC~V~H~   88 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLG-T-QTYICNVNHK   88 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEE--EEEEEEGGGGG-T-CCCEEEEEEG
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEE--EEEEECccccC-C-CeEEEEEEeC
Confidence            5788999999977755445899988875421   1 123456667664  46777765553 3 4899999996

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.51  E-value=0.00012  Score=48.58  Aligned_cols=72  Identities=19%  Similarity=0.392  Sum_probs=46.7

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcc-eEEEeeC--Ceee---eeee--------eccCCcEEEcc--CC---cEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLL-LIAWLRE--GVSE---ARSI--------IHSGGRYSITT--AG---ALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~-~vsW~kd--~~~~---~~~~--------~~~~~r~~v~~--~G---~L~I~~v~~   76 (114)
                      ..|.+|+++.|.|.+.++. ..+. -+.|.|-  +..+   ....        ..-.+||.+..  +.   .|+|++++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            3577899999999975543 2322 5789863  2222   1100        01247998853  22   299999999


Q ss_pred             CCCCeeeEEEEee
Q psy9140          77 EDSYIRYYCQTTH   89 (114)
Q Consensus        77 ~D~gg~Y~C~a~n   89 (114)
                      ||+ +.|.|....
T Consensus        90 eDt-AvYYCAr~~  101 (132)
T d1tjgh1          90 VDT-ATYFCAHRR  101 (132)
T ss_dssp             GGC-EEEEEEEEC
T ss_pred             ccc-eEEEEEEec
Confidence            999 599997653

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.50  E-value=0.00041  Score=45.47  Aligned_cols=91  Identities=20%  Similarity=0.308  Sum_probs=55.8

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+     |.+.       ..-.+||.+..+     ..|+|++++.
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSY-TMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECcccCcCC-ceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            3577899999999986542 222 5788773  2221     1110       011469998632     2399999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEeccc
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSEIA  109 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~~~  109 (114)
                      ||+ +.|.|........----...+.|+|..++
T Consensus        89 eDt-AvYYCAr~~~~~~~d~WG~GT~VTVsSa~  120 (123)
T d1mqkh_          89 EDT-AMYYCVRHEYYYAMDYWGQGTTVTVSSAW  120 (123)
T ss_dssp             GGC-EEEEEEEEETTTEEEEECCCEEEEECSSC
T ss_pred             Ccc-cceeEEecCCCccccccCCCEEEEEeCCC
Confidence            999 59999765432210011446677777654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.44  E-value=0.00054  Score=44.55  Aligned_cols=71  Identities=23%  Similarity=0.453  Sum_probs=46.2

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEcc--CC---cEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITT--AG---ALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~--~G---~L~I~~v~   75 (114)
                      -..+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+.     .+.       ..-.+||.+..  +.   .|+|++++
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y-~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTY-PIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT   87 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSS-CEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred             CceECCCCCEEEEEEEeccCCCCC-CcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence            34567899999999985532 223 5788874  33321     110       01136898842  22   39999999


Q ss_pred             CCCCCeeeEEEEe
Q psy9140          76 MEDSYIRYYCQTT   88 (114)
Q Consensus        76 ~~D~gg~Y~C~a~   88 (114)
                      .||+ +.|.|...
T Consensus        88 ~eDs-AvYYCA~~   99 (119)
T d1qnzh_          88 SDDS-AVYYCAIH   99 (119)
T ss_dssp             GGGC-EEEEEEEC
T ss_pred             ccce-eEEEEEEe
Confidence            9999 59999544

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.41  E-value=0.00051  Score=44.81  Aligned_cols=69  Identities=17%  Similarity=0.363  Sum_probs=45.7

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeeeee-----e------eccCCcEEEcc--CC---cEEEeecCCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEARS-----I------IHSGGRYSITT--AG---ALHIRDTGME   77 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~~~-----~------~~~~~r~~v~~--~G---~L~I~~v~~~   77 (114)
                      ..|.+|+++.|.|.+.++. ..+ -+.|.|-  +..+...     .      ..-.+||.+..  +.   .|+|++++.|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y-~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDY-YWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSC-CEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCccC-cceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            3577899999999986542 222 5788774  3322110     0      01147999863  22   3999999999


Q ss_pred             CCCeeeEEEE
Q psy9140          78 DSYIRYYCQT   87 (114)
Q Consensus        78 D~gg~Y~C~a   87 (114)
                      |+ +.|.|..
T Consensus        89 Dt-A~YYCAr   97 (120)
T d1dn0b1          89 DT-AVYYCAR   97 (120)
T ss_dssp             GC-EEEEEEE
T ss_pred             cc-cEEEEEe
Confidence            99 5999943

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00023  Score=46.44  Aligned_cols=75  Identities=19%  Similarity=0.425  Sum_probs=48.6

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeeee-----ee-------eccCCcEEEcc--CC---cEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEAR-----SI-------IHSGGRYSITT--AG---ALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~~-----~~-------~~~~~r~~v~~--~G---~L~I~   72 (114)
                      ++.-..+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+..     +.       ..-.+||.+..  +.   .|+|+
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~~~-~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~   84 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFTGH-LLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV   84 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCC-CcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence            33344577899999999985542 222 6788873  333211     10       01146998843  22   49999


Q ss_pred             ecCCCCCCeeeEEEEee
Q psy9140          73 DTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n   89 (114)
                      +++.||+ +.|.|....
T Consensus        85 ~l~~eDt-A~YYCAr~~  100 (120)
T d1pg7x1          85 RLTSNDS-AVYYCARED  100 (120)
T ss_dssp             SCCGGGC-EEEEEEEEC
T ss_pred             ccCCCcc-eEEEeeecC
Confidence            9999999 599998654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.41  E-value=0.00087  Score=43.55  Aligned_cols=72  Identities=21%  Similarity=0.446  Sum_probs=47.7

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC--C---cEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA--G---ALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~--G---~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+.     .+.       ..-.+||.|..+  .   .|+|++++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y-~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKY-WMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECCccccCC-ceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            3577899999999996652 122 6788863  22221     110       011479988642  2   399999999


Q ss_pred             CCCCeeeEEEEeec
Q psy9140          77 EDSYIRYYCQTTHK   90 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~   90 (114)
                      ||+ +.|.|.....
T Consensus        89 eDt-AvYYCAr~~~  101 (118)
T d2fbjh1          89 EDT-ALYYCARLHY  101 (118)
T ss_dssp             GGC-EEEEEEEEET
T ss_pred             Ccc-eEEEeeEecC
Confidence            999 5999976654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.40  E-value=0.0008  Score=43.97  Aligned_cols=74  Identities=19%  Similarity=0.362  Sum_probs=49.5

Q ss_pred             cceeEEEeCCeEEEEeecCCCC-CCcceEEEeeCC--eee-----eeee-------eccCCcEEEccCC-----cEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLREG--VSE-----ARSI-------IHSGGRYSITTAG-----ALHIRD   73 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~~~-----~~~~-------~~~~~r~~v~~~G-----~L~I~~   73 (114)
                      +--..+.+|+++.|.|.+.++. ..+ -++|.|-.  ..+     |.+.       ..-.+||.+..+-     -|+|++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~   86 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSY-GLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGS-EEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCC-CceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence            4455688999999999997652 222 68898832  221     1110       0124799885421     399999


Q ss_pred             cCCCCCCeeeEEEEee
Q psy9140          74 TGMEDSYIRYYCQTTH   89 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n   89 (114)
                      ++.||+ +.|.|....
T Consensus        87 L~~eDt-A~YYCAr~~  101 (122)
T d1vgeh1          87 LRPEDT-AVYYCARDP  101 (122)
T ss_dssp             CCGGGC-EEEEEEEET
T ss_pred             cCCCcc-eEEEEeecC
Confidence            999999 599997653

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.38  E-value=0.0011  Score=42.86  Aligned_cols=72  Identities=18%  Similarity=0.343  Sum_probs=47.5

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeeee-----e------eeccCCcEEEcc--C---CcEEEeecCCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEAR-----S------IIHSGGRYSITT--A---GALHIRDTGME   77 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~~-----~------~~~~~~r~~v~~--~---G~L~I~~v~~~   77 (114)
                      ..+.+|+++.|.|.+.++. ..+ -++|.|-  +..+..     .      ...-.+||.+..  +   ..|+|++++.|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDY-YWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTS-EEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCC-cceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            3567799999999986542 223 6788874  322210     0      011147998863  2   24999999999


Q ss_pred             CCCeeeEEEEeec
Q psy9140          78 DSYIRYYCQTTHK   90 (114)
Q Consensus        78 D~gg~Y~C~a~n~   90 (114)
                      |+ +.|.|.....
T Consensus        89 Dt-AvYyCAr~~~  100 (116)
T d7fabh1          89 DT-AVYYCARNLI  100 (116)
T ss_dssp             GC-EEEEEEEECS
T ss_pred             cc-eEEEeeeecC
Confidence            99 5999976543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.37  E-value=0.0008  Score=43.98  Aligned_cols=70  Identities=17%  Similarity=0.333  Sum_probs=44.4

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcc-eEEEeeC--Ceeee-----eeee------ccCCcEEEcc--C---CcEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLL-LIAWLRE--GVSEA-----RSII------HSGGRYSITT--A---GALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~-~vsW~kd--~~~~~-----~~~~------~~~~r~~v~~--~---G~L~I~~v~~~   77 (114)
                      .|.+|+++.|.|.+.++. ...- -+.|.|-  +..+.     ....      .-.+||.+..  +   -.|+|++++.|
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            456799999999975432 2222 5789863  22221     1100      0136898853  2   23999999999


Q ss_pred             CCCeeeEEEEe
Q psy9140          78 DSYIRYYCQTT   88 (114)
Q Consensus        78 D~gg~Y~C~a~   88 (114)
                      |+ +.|.|...
T Consensus        91 Ds-AvYyCAr~  100 (123)
T d1r0ah1          91 DT-AIYYCAQS  100 (123)
T ss_dssp             GC-EEEEEEEE
T ss_pred             cc-eEEeeccc
Confidence            99 59999744

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.36  E-value=0.00056  Score=44.65  Aligned_cols=70  Identities=23%  Similarity=0.518  Sum_probs=46.5

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccCC-----cEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTAG-----ALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~G-----~L~I~~v~~~   77 (114)
                      .+.+|+++.|.|.+.++- ..+ -+.|.|-  +..+.     .+.       ..-.+||.+..+-     .|+|++++.|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y-~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSY-AMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCC-ceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            467899999999996542 222 6788763  22221     100       1124699886432     4999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |+ +.|.|....
T Consensus        90 Dt-AvYYCAr~~  100 (121)
T d1ol0a_          90 DT-AVYYCAREP  100 (121)
T ss_dssp             GC-EEEEEEECC
T ss_pred             cc-eEEEEEEec
Confidence            99 599997554

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.34  E-value=0.00036  Score=45.47  Aligned_cols=70  Identities=20%  Similarity=0.381  Sum_probs=46.8

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeCC--eeeeee---e--------eccCCcEEEccCC-----cEEEeecCCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLREG--VSEARS---I--------IHSGGRYSITTAG-----ALHIRDTGMED   78 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~~~~~~---~--------~~~~~r~~v~~~G-----~L~I~~v~~~D   78 (114)
                      .|.+|+++.|.|.+.++. ..+ .+.|.|-.  +.+...   .        ..-.+||.+..+-     .|+|++++.||
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y-~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTY-DMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCE-EEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCccCC-ceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            467899999999986542 222 68998752  212100   0        0114699986432     49999999999


Q ss_pred             CCeeeEEEEee
Q psy9140          79 SYIRYYCQTTH   89 (114)
Q Consensus        79 ~gg~Y~C~a~n   89 (114)
                      + +.|.|....
T Consensus        89 t-A~YYCAr~~   98 (119)
T d1kxvc_          89 T-AMYYCKPSL   98 (119)
T ss_dssp             C-EEEEEEEEE
T ss_pred             c-ceEeeeecc
Confidence            9 599997654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.34  E-value=0.00026  Score=46.55  Aligned_cols=71  Identities=15%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcc-eEEEeeC--Ceeee---e--eee------ccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLL-LIAWLRE--GVSEA---R--SII------HSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~-~vsW~kd--~~~~~---~--~~~------~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++- ...- -+.|.|-  +..+.   .  ...      .-.+||.+.-+     -.|+|++++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            3566799999999975432 2222 5789753  22221   1  000      11469988531     2499999999


Q ss_pred             CCCCeeeEEEEe
Q psy9140          77 EDSYIRYYCQTT   88 (114)
Q Consensus        77 ~D~gg~Y~C~a~   88 (114)
                      ||+ +.|.|...
T Consensus        90 eDt-AvYyCAr~  100 (126)
T d1etzb1          90 SDT-ATYHCARR  100 (126)
T ss_dssp             GGC-EEEEEEEE
T ss_pred             ccc-ceEEEEEe
Confidence            999 59999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.33  E-value=0.00029  Score=46.01  Aligned_cols=70  Identities=20%  Similarity=0.396  Sum_probs=46.2

Q ss_pred             eEEEeCCeEEEEeecCCCC---CCcceEEEeeC--Ceeeeee--ee---------ccCCcEEEcc--CC---cEEEeecC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN---HNLLLIAWLRE--GVSEARS--II---------HSGGRYSITT--AG---ALHIRDTG   75 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~---~~~~~vsW~kd--~~~~~~~--~~---------~~~~r~~v~~--~G---~L~I~~v~   75 (114)
                      ..|.+|+++.|.|.+.++.   ..+ -+.|.|-  +..+...  ..         .-.+||.+.-  +.   .|+|++++
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y-~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNY-CWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTE-EEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             ceECCCCCEEEEEEEcccccccCcc-ccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            3477899999999986643   122 6789774  3332110  00         1136998853  22   39999999


Q ss_pred             CCCCCeeeEEEEe
Q psy9140          76 MEDSYIRYYCQTT   88 (114)
Q Consensus        76 ~~D~gg~Y~C~a~   88 (114)
                      .||+ +.|.|...
T Consensus        89 ~eDt-AvYYCAr~  100 (120)
T d1ai1h1          89 NEDT-AMYYCSRE  100 (120)
T ss_dssp             GGGC-EEEEEEEE
T ss_pred             ccce-eEEEEEec
Confidence            9999 59999644

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00041  Score=44.92  Aligned_cols=69  Identities=25%  Similarity=0.502  Sum_probs=44.8

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeeeee-----e-------eccCCcEEEcc--CC---cEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEARS-----I-------IHSGGRYSITT--AG---ALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~~~-----~-------~~~~~r~~v~~--~G---~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++- ..+ .+.|.|-  +..+...     .       ..-.+||.+..  +.   .|+|++++.
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y-~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDY-NIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-CEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEccccCCCC-CcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            4577899999999986542 222 5778773  3322110     0       01136998852  22   499999999


Q ss_pred             CCCCeeeEEEE
Q psy9140          77 EDSYIRYYCQT   87 (114)
Q Consensus        77 ~D~gg~Y~C~a   87 (114)
                      ||+ +.|.|..
T Consensus        89 eDt-AvYYCAr   98 (115)
T d1f3dh1          89 EDS-AVYYCAN   98 (115)
T ss_dssp             GGC-EEEEEEE
T ss_pred             CCc-EEEEEec
Confidence            999 5999954

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.001  Score=40.43  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             EEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeecc
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKL   91 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l   91 (114)
                      ...|..++|.|....+..+..--.|.|+|..|     .. +|-. ...-++.|..  .+|+ |.|.|+..+..
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl-----~e-d~~~-~~~tey~V~~--~D~S-GeY~CVFl~~P   71 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVL-----KE-DALP-GQKTEFKVDS--DDQW-GEYSCVFLPEP   71 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEE-----EC-TTCC-CSEEEEEECG--GGCC-EEEEEEEESTT
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEc-----cc-cCCC-CCceEEEEec--CCCC-ceEEEEEcCCC
Confidence            35788999999985443322256999999975     11 2210 0112455543  4455 69999987643

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.26  E-value=0.0011  Score=43.22  Aligned_cols=74  Identities=22%  Similarity=0.451  Sum_probs=47.6

Q ss_pred             cceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEcc--C---CcEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITT--A---GALHIRD   73 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~--~---G~L~I~~   73 (114)
                      ..-..+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+.     .+.       ..-.+||.+..  +   ..|+|++
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~-~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~   85 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDT-YMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS   85 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCC-CcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence            3345677899999999985542 122 6788763  33221     110       01135998852  2   2399999


Q ss_pred             cCCCCCCeeeEEEEee
Q psy9140          74 TGMEDSYIRYYCQTTH   89 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n   89 (114)
                      ++.||+ +.|.|....
T Consensus        86 L~~eDt-AvYYCAr~~  100 (121)
T d1j05b_          86 LTSEDT-AVYYCAPFG  100 (121)
T ss_dssp             CCGGGC-EEEEEEEEB
T ss_pred             cCcCcc-eEEEeEeec
Confidence            999999 599997543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.25  E-value=0.0008  Score=43.92  Aligned_cols=76  Identities=20%  Similarity=0.472  Sum_probs=48.9

Q ss_pred             ccceeEEEeCCeEEEEeecCCCCCCcceEEEeeC--Ceeeeee--------------eeccCCcEEEccCC-----cEEE
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLRE--GVSEARS--------------IIHSGGRYSITTAG-----ALHI   71 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd--~~~~~~~--------------~~~~~~r~~v~~~G-----~L~I   71 (114)
                      +.--..+.+|+++.|.|.+.++.-..--++|.|-  ++.+...              ...-.+||.+..+-     -|+|
T Consensus         6 eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~   85 (121)
T d1nfdf1           6 ESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQM   85 (121)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeecee
Confidence            3344568899999999999765311116789883  3222100              01124688775422     2999


Q ss_pred             eecCCCCCCeeeEEEEee
Q psy9140          72 RDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n   89 (114)
                      ++++.||. +.|.|....
T Consensus        86 ~~L~~eDT-AvYYCAr~~  102 (121)
T d1nfdf1          86 NRLRVDDT-AIYYCTRAG  102 (121)
T ss_dssp             ESCCGGGC-EECEEEEEE
T ss_pred             cccCCCcc-eEEEEeccC
Confidence            99999999 599996543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.16  E-value=0.0004  Score=45.15  Aligned_cols=72  Identities=21%  Similarity=0.371  Sum_probs=47.4

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      ...+.+|.++.|.|.+.++- ..+ -++|.|-  +..+     |.+.       ..-.+||.+..+     --|+|++++
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y-~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTY-WMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSS-EEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCC-ceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            34567899999999996642 223 7888883  2222     1110       011379988642     249999999


Q ss_pred             CCCCCeeeEEEEee
Q psy9140          76 MEDSYIRYYCQTTH   89 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n   89 (114)
                      .||+ +.|.|....
T Consensus        88 ~eDT-AvYYCAr~~  100 (117)
T d1jnhb1          88 SEDS-AVYSCSRGR  100 (117)
T ss_dssp             GGGC-EEEEEEEEE
T ss_pred             CCcc-eEEEEeecC
Confidence            9999 599996543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00063  Score=42.82  Aligned_cols=54  Identities=24%  Similarity=0.452  Sum_probs=36.3

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecC-CCCCCeeeEEEEee
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTG-MEDSYIRYYCQTTH   89 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~-~~D~gg~Y~C~a~n   89 (114)
                      +-|.+++|.|-..  ...  .|.|.+++..+    ...++++       |...+-. .+|+ |.|.|...+
T Consensus        12 ISGTtV~LTCP~~--~~~--~I~Wkkn~~~i----~g~~~~~-------L~L~~FSE~e~S-GyY~C~~~~   66 (100)
T d1jbja2          12 ISGTSVELTCPLD--SDE--NLKWEKNGQEL----PQKHDKH-------LVLQDFSEVEDS-GYYVCYTPA   66 (100)
T ss_dssp             EETTEEEEECSSC--CCT--TCEEEETTEEE----CSCCCSE-------EEEESCCTTTSC-EEEEEECSS
T ss_pred             EeCCEEEEECCCC--CCC--ceEEeeccccC----CCCCCcE-------EEEccccccccC-cceEEecCC
Confidence            5799999999643  233  69999999853    1233444       4445543 4788 599996554

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.00077  Score=43.81  Aligned_cols=71  Identities=21%  Similarity=0.430  Sum_probs=46.2

Q ss_pred             cceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRD   73 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~   73 (114)
                      +.-..+.+|+++.|.|.+.++. ..+ .++|.|-  +..+     |.+.       ..-.+||.+..+     ..|+|++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y-~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~s   85 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTY-AMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELAR   85 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCC-ceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccc
Confidence            3344567899999999986542 222 6888874  2222     1110       011368888532     2499999


Q ss_pred             cCCCCCCeeeEEE
Q psy9140          74 TGMEDSYIRYYCQ   86 (114)
Q Consensus        74 v~~~D~gg~Y~C~   86 (114)
                      ++.||+ +.|.|.
T Consensus        86 L~~eDT-AvYYCA   97 (118)
T d2jelh1          86 LTSEDS-AIYYCA   97 (118)
T ss_dssp             CCGGGC-EEEEEE
T ss_pred             cccCcc-eeeeEE
Confidence            999999 599994

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.0007  Score=44.48  Aligned_cols=74  Identities=22%  Similarity=0.435  Sum_probs=48.6

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEcc--C---CcEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITT--A---GALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~--~---G~L~I~   72 (114)
                      ++--..+.+|++..|.|.+.++. ..+ .++|.|-  ++.+     |.+.       ..-.+||.+..  +   --|+|+
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNY-WIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTE-EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCC-CCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            34445677899999999996642 222 6888873  2222     1110       11248998852  1   249999


Q ss_pred             ecCCCCCCeeeEEEEe
Q psy9140          73 DTGMEDSYIRYYCQTT   88 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~   88 (114)
                      +++.||+ +.|.|...
T Consensus        84 ~L~~eDT-AvYYCAr~   98 (126)
T d1lmka1          84 SLTSEDS-AVYYCARG   98 (126)
T ss_dssp             SCCGGGC-EEEEEEEE
T ss_pred             ccCCCcc-eEEEEeec
Confidence            9999999 59999653

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.0021  Score=40.61  Aligned_cols=68  Identities=19%  Similarity=0.386  Sum_probs=40.9

Q ss_pred             eCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccCC-----cEEEeecCCCCCC
Q psy9140          21 RGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTAG-----ALHIRDTGMEDSY   80 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~G-----~L~I~~v~~~D~g   80 (114)
                      +|+++.|.|.+.++- ..+ -++|.|-  ++.+     |.+.       ..-.+||.+..+-     -|+|++++.||+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSY-WMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTS-EEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEEECCChhcC-ceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            589999999997642 233 6889863  2222     1110       1124799886432     4999999999995


Q ss_pred             eeeEEEEeec
Q psy9140          81 IRYYCQTTHK   90 (114)
Q Consensus        81 g~Y~C~a~n~   90 (114)
                       .|.|.....
T Consensus        80 -vYYCAr~~~   88 (103)
T d1oari_          80 -VYYCARMWY   88 (103)
T ss_dssp             -EEEEEEEEC
T ss_pred             -EEEeEEECC
Confidence             999976543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.11  E-value=0.00067  Score=44.03  Aligned_cols=74  Identities=19%  Similarity=0.412  Sum_probs=48.3

Q ss_pred             eccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC-----CcEEE
Q psy9140          12 INTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA-----GALHI   71 (114)
Q Consensus        12 v~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~-----G~L~I   71 (114)
                      +++.-..+.+|+++.|.|.+.++- ..+ -+.|.|-  +..+.     .+.       ..-.+|+.+..+     ..|+|
T Consensus         5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~-~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i   83 (117)
T d1mfah1           5 QQSGTVVARPGASVKMSCKASGYTFTNY-WMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMEL   83 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcccCCCCC-ceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeee
Confidence            345556678899999999986642 222 6778773  33321     110       011358887432     24999


Q ss_pred             eecCCCCCCeeeEEEE
Q psy9140          72 RDTGMEDSYIRYYCQT   87 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a   87 (114)
                      ++++.||+ +.|.|..
T Consensus        84 ~~L~~eDt-AvYYCAr   98 (117)
T d1mfah1          84 SSLTSEDS-AVYYCTR   98 (117)
T ss_dssp             CSCCGGGC-EEEEEEE
T ss_pred             cccCCCcc-eEEEEec
Confidence            99999999 5999964

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.11  E-value=0.0012  Score=42.91  Aligned_cols=71  Identities=23%  Similarity=0.462  Sum_probs=46.7

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eeee---------ccCCcEEEcc--CC---cEEEeec
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSII---------HSGGRYSITT--AG---ALHIRDT   74 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~~---------~~~~r~~v~~--~G---~L~I~~v   74 (114)
                      ..+.+|++..|.|.+.++. ..+ -++|.|-  +..+.     .+..         .-.+||.+..  +.   -|+|+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L   88 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDA-WMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL   88 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTC-EEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCccCcCC-ceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence            3567799999999986542 222 6788873  33321     1100         1136998853  22   4999999


Q ss_pred             CCCCCCeeeEEEEee
Q psy9140          75 GMEDSYIRYYCQTTH   89 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n   89 (114)
                      +.||+ +.|.|....
T Consensus        89 ~~eDt-AvYYCA~~~  102 (120)
T d1dlfh_          89 RAEDT-GIYYCTGIY  102 (120)
T ss_dssp             CGGGC-EEEEEEEEB
T ss_pred             cCCCc-eEEEeeEec
Confidence            99999 599996543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.10  E-value=0.00056  Score=44.44  Aligned_cols=71  Identities=23%  Similarity=0.443  Sum_probs=47.4

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|++..|.|.+.++. ..+ .+.|.|-  +..+     |.+.       ..-.+||.|..+     -.|+|++++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEY-YMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCC-ceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            4567899999999997642 222 7888874  2222     1110       112478988642     2399999999


Q ss_pred             CCCCeeeEEEEee
Q psy9140          77 EDSYIRYYCQTTH   89 (114)
Q Consensus        77 ~D~gg~Y~C~a~n   89 (114)
                      ||. +.|.|....
T Consensus        89 eDT-AvYYCAr~~  100 (117)
T d1jpth1          89 EDT-AVYYCARDT  100 (117)
T ss_dssp             GGC-EEEEEEEEC
T ss_pred             CCc-eEEEEeecC
Confidence            999 599996543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.09  E-value=0.00084  Score=43.97  Aligned_cols=75  Identities=20%  Similarity=0.403  Sum_probs=47.9

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC--C---cEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA--G---ALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~--G---~L~I~   72 (114)
                      ++-...+.+|+++.|.|.+.++. ..+ -+.|.|-  ++.+.     .+.       ..-.+||.+..+  .   .|+|+
T Consensus         6 esg~~l~kPg~sl~LsC~~SG~~~~~y-~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRASGYSFTSY-WIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccCCCCCC-CCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            34445677899999999986542 222 5677763  33221     100       112468888532  1   39999


Q ss_pred             ecCCCCCCeeeEEEEee
Q psy9140          73 DTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n   89 (114)
                      +++.||+ +.|.|....
T Consensus        85 sL~~eDt-AvYYCAR~~  100 (125)
T d1rihh1          85 SLTSEDS-AVYYCARES  100 (125)
T ss_dssp             SCCGGGC-EEEEEEEEC
T ss_pred             ccCcccc-eEEEEeeeC
Confidence            9999999 599997553

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=1.5e-05  Score=51.12  Aligned_cols=69  Identities=12%  Similarity=0.211  Sum_probs=47.0

Q ss_pred             EEeCCeEEEEeecCCCCCCcc--eEEEeeCCeeee-----eeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeec
Q psy9140          19 VLRGNIAVLQCNIPAYNHNLL--LIAWLREGVSEA-----RSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~~~~~--~vsW~kd~~~~~-----~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ...+..+.|.|.+.+|.....  .++|.+|+..+.     .+....++.|.+.  ..|.|..-++.. |..|+|.+.|.
T Consensus        26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~~W~~-g~~ytC~V~H~  101 (116)
T d1igyb3          26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVV--SALPIMHQDWLN-GKEFKCRVNSA  101 (116)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCC--CCEECCHHHHHH-TCCCBCCBCCS
T ss_pred             cccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEE--EEEEECHHHhCC-CCEEEEEEEeC
Confidence            456999999999987654332  678999987542     1123346677554  567766554444 46999999986

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.05  E-value=0.0011  Score=43.16  Aligned_cols=71  Identities=24%  Similarity=0.400  Sum_probs=47.1

Q ss_pred             eEEEeCCeEEEEeecCCCC--CCcceEEEeeC--Ceeeee-----ee------eccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN--HNLLLIAWLRE--GVSEAR-----SI------IHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~--~~~~~vsW~kd--~~~~~~-----~~------~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|++..|.|.+.++.  ..+ -++|.|-  +..+..     +.      ..-.+||.+..+     -.|+|++++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y-~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDF-AWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSE-EEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEccccccCCC-ccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            4577899999999996642  223 5788763  433311     00      011468888642     2399999999


Q ss_pred             CCCCeeeEEEEee
Q psy9140          77 EDSYIRYYCQTTH   89 (114)
Q Consensus        77 ~D~gg~Y~C~a~n   89 (114)
                      ||+ +.|.|....
T Consensus        89 eDT-AvYYCAr~~  100 (119)
T d1ncwh1          89 EDT-ATYYCAGLL  100 (119)
T ss_dssp             GGC-EEEEEEEEE
T ss_pred             CCc-eEEEEeEec
Confidence            999 699996544

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.04  E-value=0.0013  Score=42.89  Aligned_cols=70  Identities=24%  Similarity=0.426  Sum_probs=46.5

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~~   77 (114)
                      .|.+|+++.|.|.+.++. ..+ -+.|.|-  +..+     |.+.       ..-.+||.+..+     --|+|++++.|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y-~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNF-GMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS-CEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCC-ceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            467899999999996642 122 6788883  2221     1110       111479988532     35999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |+ +.|.|...+
T Consensus        90 DT-AvYYCAr~~  100 (122)
T d1bz7b1          90 DT-AIYYCTRGG  100 (122)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             Cc-eEEEeecCC
Confidence            99 599997654

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.00  E-value=0.0014  Score=43.17  Aligned_cols=75  Identities=24%  Similarity=0.435  Sum_probs=48.8

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC-----CcEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~-----G~L~I~   72 (114)
                      ++.-..+.+|+++.|.|.+.++. ..+ -++|.|-  +..+.     .+.       ..-.+||.|..+     --|+|+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s~y-~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFSNY-AINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGGGC-CEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCC-ceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            34445677899999999997652 222 6788773  33221     110       011468988531     139999


Q ss_pred             ecCCCCCCeeeEEEEee
Q psy9140          73 DTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n   89 (114)
                      +++.||+ +.|.|....
T Consensus        85 sL~~eDt-A~YYCAr~~  100 (130)
T d1rzga1          85 SLRSEDT-AVFYCASPY  100 (130)
T ss_dssp             SCCGGGC-EEEEEEECC
T ss_pred             ecCCCcc-EEEEEEEec
Confidence            9999999 599998643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.96  E-value=0.0012  Score=42.72  Aligned_cols=71  Identities=20%  Similarity=0.433  Sum_probs=46.9

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee------eccCCcEEEcc--CC---cEEEeecCCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI------IHSGGRYSITT--AG---ALHIRDTGME   77 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~------~~~~~r~~v~~--~G---~L~I~~v~~~   77 (114)
                      ..+.+|+++.|.|.+.++. .++ -+.|.|-  +..+.     .+.      ..-.+||.+..  +.   .|+|++++.|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGY-GVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSS-EEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcccccCCC-CCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            4577899999999986532 233 6788874  22221     100      01146888853  22   3999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |. +.|.|.-..
T Consensus        89 DT-AvYYCAr~~   99 (116)
T d1a2yb_          89 DT-ARYYCARER   99 (116)
T ss_dssp             GC-EEEEEEEES
T ss_pred             cc-eEEEEEEeC
Confidence            99 599997554

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.95  E-value=0.001  Score=43.14  Aligned_cols=73  Identities=22%  Similarity=0.455  Sum_probs=48.1

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEcc--C---CcEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITT--A---GALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~--~---G~L~I~   72 (114)
                      ++.-..+.+|+++.|.|.+.++. ..+ -++|.|-  +..+.     .+.       ..-.+||.+..  +   -.|+|+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~-~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNY-WINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCcEECCCCCEEEEEEEccCccccC-ceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            44556788999999999996643 122 6788873  22221     110       01135998842  1   249999


Q ss_pred             ecCCCCCCeeeEEEE
Q psy9140          73 DTGMEDSYIRYYCQT   87 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a   87 (114)
                      +++.||. +.|.|..
T Consensus        85 sL~~eDt-AvYYCAr   98 (116)
T d1mjuh1          85 SLTSDDS-AVYYCAN   98 (116)
T ss_dssp             SCCGGGC-EEEEEEE
T ss_pred             ccCCCCc-eEEEEcc
Confidence            9999999 5999964

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.95  E-value=0.00088  Score=42.82  Aligned_cols=69  Identities=25%  Similarity=0.430  Sum_probs=43.9

Q ss_pred             EEeCCeEEEEeecCCCC-CCcceEEEeeCC--eeee-----eee------eccCCcEEEccC--C---cEEEeecCCCCC
Q psy9140          19 VLRGNIAVLQCNIPAYN-HNLLLIAWLREG--VSEA-----RSI------IHSGGRYSITTA--G---ALHIRDTGMEDS   79 (114)
Q Consensus        19 v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~~~~-----~~~------~~~~~r~~v~~~--G---~L~I~~v~~~D~   79 (114)
                      |.+|+++.|.|.+.++- ..+ -+.|.|-.  ..+.     ...      ..-.+||.+.-+  .   .|+|++++.||+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGG-FMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCTTCCEEEEECCCC-----C-CEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             ecCCCCcEEEEEECCCCccCC-cEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            45799999999996642 222 57888752  2221     000      111469988632  2   399999999999


Q ss_pred             CeeeEEEEee
Q psy9140          80 YIRYYCQTTH   89 (114)
Q Consensus        80 gg~Y~C~a~n   89 (114)
                       +.|.|....
T Consensus        84 -AvYyCA~~~   92 (107)
T d1sjva_          84 -AVYYCYTHY   92 (107)
T ss_dssp             -SEEEEEECC
T ss_pred             -eeeeEeccC
Confidence             499996543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.95  E-value=0.0011  Score=43.52  Aligned_cols=72  Identities=22%  Similarity=0.433  Sum_probs=46.9

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeCC--e---ee--eeee------------eccCCcEEEcc--CC---cEEE
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLREG--V---SE--ARSI------------IHSGGRYSITT--AG---ALHI   71 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~---~~--~~~~------------~~~~~r~~v~~--~G---~L~I   71 (114)
                      ..+.+|+++.|.|.+.++. ..+ .++|.|-.  .   .+  |...            ..-.+||.+..  +.   .|+|
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y-~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTY-VIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCCCCCC-ceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            3466799999999986542 222 78998741  1   11  1100            01136998853  22   4999


Q ss_pred             eecCCCCCCeeeEEEEeec
Q psy9140          72 RDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        72 ~~v~~~D~gg~Y~C~a~n~   90 (114)
                      ++++.||+ +.|.|.....
T Consensus        89 ~~l~~eDt-AvYYCAr~~~  106 (127)
T d1i3ua_          89 NSLKPEDT-AVYYCAAKTT  106 (127)
T ss_dssp             CSCCGGGC-EEEEEEEESC
T ss_pred             ecccccce-eEEEEEEEee
Confidence            99999999 5999987643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.95  E-value=0.00058  Score=43.84  Aligned_cols=72  Identities=22%  Similarity=0.389  Sum_probs=47.1

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeeee---------ccCCcEEEccC-----CcEEEee
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSII---------HSGGRYSITTA-----GALHIRD   73 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~~---------~~~~r~~v~~~-----G~L~I~~   73 (114)
                      -..|.+|+++.|.|.+.++- ..+ -++|.|-  +..+     |.+..         .-.+||.+..+     ..|+|++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~-~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTD-AMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCeECCCCCeEEEEEECCCccccc-ccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            34577899999999986542 112 6788873  3222     11110         11369988632     2499999


Q ss_pred             cCCCCCCeeeEEEEee
Q psy9140          74 TGMEDSYIRYYCQTTH   89 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n   89 (114)
                      ++.||+ +.|.|.-.+
T Consensus        88 L~~eDT-AvYYCAr~~  102 (109)
T d2ck0h1          88 LKTEDT-GIYYCVRGR  102 (109)
T ss_dssp             CCGGGC-EEEEEEEEC
T ss_pred             CCHhHC-EEEEEEEcC
Confidence            999999 599997543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.94  E-value=0.001  Score=43.24  Aligned_cols=69  Identities=19%  Similarity=0.468  Sum_probs=45.6

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC--C---cEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA--G---ALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~--G---~L~I~~v~   75 (114)
                      -..+.+|+++.|.|.+.++- ..+ -++|.|-  +..+     |.+.       ..-.+||.+..+  .   .|+|++++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDF-SMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCC-ceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            34578899999999986642 222 6788774  2222     1110       011579998631  1   39999999


Q ss_pred             CCCCCeeeEEE
Q psy9140          76 MEDSYIRYYCQ   86 (114)
Q Consensus        76 ~~D~gg~Y~C~   86 (114)
                      .||+ +.|.|-
T Consensus        88 ~eDt-AvYYCA   97 (118)
T d1nlbh1          88 NEDT-ATYFCA   97 (118)
T ss_dssp             GGGC-EEEEEE
T ss_pred             cCcc-eEEEEe
Confidence            9999 599994

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.94  E-value=0.0018  Score=42.16  Aligned_cols=70  Identities=24%  Similarity=0.488  Sum_probs=46.3

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeCC--eeee-----eee-------eccCCcEEEccC--C---cEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLREG--VSEA-----RSI-------IHSGGRYSITTA--G---ALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~~~~-----~~~-------~~~~~r~~v~~~--G---~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++- ..+ -++|.|-.  ..+.     .+.       ..-.+||.+..+  .   -|+|++++.
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y-~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYI-YMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCS-EEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCCcccC-ceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            3577899999999986542 222 67888742  2221     100       011369988632  1   399999999


Q ss_pred             CCCCeeeEEEEe
Q psy9140          77 EDSYIRYYCQTT   88 (114)
Q Consensus        77 ~D~gg~Y~C~a~   88 (114)
                      ||+ +.|.|...
T Consensus        89 eDt-AvYYCAr~   99 (121)
T d2p49b1          89 EDT-ATYYCAAG   99 (121)
T ss_dssp             GGC-EEEEEEES
T ss_pred             cce-eEEeeecc
Confidence            999 59999764

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.90  E-value=0.001  Score=43.58  Aligned_cols=73  Identities=19%  Similarity=0.412  Sum_probs=47.9

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccCC-----cEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTAG-----ALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~G-----~L~I~   72 (114)
                      ++.-..+.+|+++.|.|.+.++. ..+ .++|.|-  +..+.     .+.       ..-.+||.+..+-     -|+|+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~-~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~   84 (124)
T d2b1hh1           6 QSGAEVKKSGESLKISCQTSGYSFSDY-WIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS   84 (124)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCC-cCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence            34445678999999999997643 222 6788872  22221     110       0114798885322     49999


Q ss_pred             ecCCCCCCeeeEEEE
Q psy9140          73 DTGMEDSYIRYYCQT   87 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a   87 (114)
                      +++.||. +.|.|..
T Consensus        85 ~L~~eDT-A~YYCAR   98 (124)
T d2b1hh1          85 SLKPSDT-ALYYCAR   98 (124)
T ss_dssp             SCCGGGC-EEEEEEE
T ss_pred             ccccccc-eEEEEee
Confidence            9999999 5999943

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.90  E-value=0.00066  Score=43.91  Aligned_cols=69  Identities=22%  Similarity=0.424  Sum_probs=45.6

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeCC--eee-----eeee-------eccCCcEEEccC--C---cEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLREG--VSE-----ARSI-------IHSGGRYSITTA--G---ALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd~--~~~-----~~~~-------~~~~~r~~v~~~--G---~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++. ..+ .+.|.|-.  ..+     |.+.       ..-.+||.+..+  .   .|+|++++.
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~-~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGE-TMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECccCccCC-ceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            3577999999999986542 122 67888742  222     1111       011369988631  2   399999999


Q ss_pred             CCCCeeeEEEE
Q psy9140          77 EDSYIRYYCQT   87 (114)
Q Consensus        77 ~D~gg~Y~C~a   87 (114)
                      ||+ +.|.|..
T Consensus        89 eDt-AvYYCA~   98 (114)
T d1indh1          89 EDT-ALYFCAS   98 (114)
T ss_dssp             GGC-EEEEEEC
T ss_pred             Ccc-cEEEECC
Confidence            999 5999954

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.89  E-value=0.0014  Score=42.88  Aligned_cols=74  Identities=23%  Similarity=0.422  Sum_probs=48.2

Q ss_pred             cceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEee
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRD   73 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~   73 (114)
                      .--..+.+|.++.|.|.+.++. ..+ -++|.|-  ++.+     |.+.       ..-.+||.|..+     --|+|++
T Consensus         7 sG~~~~kPG~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s   85 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKTSGYIFTSY-WIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS   85 (124)
T ss_dssp             CCCEEECTTCEEEEEEEEESSCGGGS-CEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred             eCCceECCCCCEEEEEEEcCCCccCC-ccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence            3344577899999999996642 222 6788873  2222     1110       011479988532     2399999


Q ss_pred             cCCCCCCeeeEEEEee
Q psy9140          74 TGMEDSYIRYYCQTTH   89 (114)
Q Consensus        74 v~~~D~gg~Y~C~a~n   89 (114)
                      ++.||+ +.|.|....
T Consensus        86 L~~eDT-AvYYCAR~~  100 (124)
T d1yedb1          86 LKSEDS-AVYFCTRWG  100 (124)
T ss_dssp             CCGGGC-EEEEEEECC
T ss_pred             cCCCcc-eEEEecccC
Confidence            999999 599997543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.89  E-value=0.003  Score=41.57  Aligned_cols=75  Identities=19%  Similarity=0.380  Sum_probs=49.5

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC-C----cEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA-G----ALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~-G----~L~I~   72 (114)
                      ++.-..+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+.     .+.       ..-.+||.+..+ .    .|+|+
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~   83 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFSMY-GFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT   83 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCTTC-EEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ccCCceECCCCCeEEEEEEeCCCccCC-CcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence            34445677899999999997652 233 6888873  33221     110       011469888631 1    39999


Q ss_pred             ecCCCCCCeeeEEEEee
Q psy9140          73 DTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a~n   89 (114)
                      +++.||+ +.|.|....
T Consensus        84 ~L~~eDt-AvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDT-AVYYCARDF   99 (130)
T ss_dssp             SCCGGGC-EEEEEEEEC
T ss_pred             ccCCCCc-EEEEEEeec
Confidence            9999999 599997654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.89  E-value=0.0016  Score=43.08  Aligned_cols=72  Identities=22%  Similarity=0.441  Sum_probs=47.9

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC-----CcEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      -..+.+|.+..|.|.+.++. ..+ -++|.|-  +..+.     .+.       ..-.+||.+..+     --|+|++++
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y-~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSH-AFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTE-EEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCccCC-CCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            34678899999999997642 222 6788873  22221     100       012479998542     249999999


Q ss_pred             CCCCCeeeEEEEee
Q psy9140          76 MEDSYIRYYCQTTH   89 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n   89 (114)
                      .||+ +.|.|....
T Consensus        87 ~eDt-A~YYCAr~~   99 (133)
T d1rzfh1          87 SDDT-AVYYCASNS   99 (133)
T ss_dssp             GGGC-EEEEEEEEE
T ss_pred             CCCC-EEEEeeecc
Confidence            9999 599996543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.88  E-value=0.0012  Score=43.32  Aligned_cols=73  Identities=22%  Similarity=0.476  Sum_probs=48.4

Q ss_pred             ccceeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC-----CcEEEe
Q psy9140          13 NTGNTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA-----GALHIR   72 (114)
Q Consensus        13 ~~~d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~-----G~L~I~   72 (114)
                      ++--..+.+|+++.|.|.+.++. ..+ -++|.|-  +..+.     .+.       ..-.+||.+..+     .-|+|+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y-~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNF-VIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCC-CEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            44556778899999999996642 122 6788873  32221     110       011468988642     239999


Q ss_pred             ecCCCCCCeeeEEEE
Q psy9140          73 DTGMEDSYIRYYCQT   87 (114)
Q Consensus        73 ~v~~~D~gg~Y~C~a   87 (114)
                      +++.||+ +.|.|.-
T Consensus        85 ~L~~eDt-AvYYCAR   98 (127)
T d1n0xh1          85 SLRSADT-AVYYCAR   98 (127)
T ss_dssp             SCCGGGC-EEEEEEE
T ss_pred             ccCCCCc-eEEEEEe
Confidence            9999999 5999964

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.86  E-value=0.001  Score=43.28  Aligned_cols=70  Identities=17%  Similarity=0.353  Sum_probs=45.8

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEcc--C---CcEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITT--A---GALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~--~---G~L~I~~v~   75 (114)
                      -..+.+|+++.|.|.+.++. ..+ -+.|.|-  ++.+     |.+.       ..-.+||.+..  +   -.|+|++++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDH-AIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEccCcccCC-CCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            34567899999999996652 122 6788873  2222     1100       01146998853  1   249999999


Q ss_pred             CCCCCeeeEEEE
Q psy9140          76 MEDSYIRYYCQT   87 (114)
Q Consensus        76 ~~D~gg~Y~C~a   87 (114)
                      .||+ +.|.|..
T Consensus        88 ~eDT-AvYYCAr   98 (119)
T d1eapb1          88 SEDS-AVYFCKR   98 (119)
T ss_dssp             GGGC-EEEEEEE
T ss_pred             CCcc-eEEEEEE
Confidence            9999 5999954

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.83  E-value=0.00057  Score=44.29  Aligned_cols=70  Identities=20%  Similarity=0.387  Sum_probs=45.4

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eeeec------cCCcEEEccC-----CcEEEeecCCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSIIH------SGGRYSITTA-----GALHIRDTGMED   78 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~~~------~~~r~~v~~~-----G~L~I~~v~~~D   78 (114)
                      .|.+|+++.|.|.+.++. ..+ -+.|.|-  +..+.     .....      -.+||.+..+     -.|+|++++.||
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSF-SVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSS-EEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccC-ccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            355799999999997642 222 6788873  33321     11000      0368877532     139999999999


Q ss_pred             CCeeeEEEEee
Q psy9140          79 SYIRYYCQTTH   89 (114)
Q Consensus        79 ~gg~Y~C~a~n   89 (114)
                      + +.|.|....
T Consensus        90 T-AvYyCAr~~   99 (116)
T d1fn4b1          90 T-GTYYCTRDL   99 (116)
T ss_dssp             C-EEEEEEEEC
T ss_pred             C-EEEEEEeec
Confidence            9 599996543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.82  E-value=0.0014  Score=42.80  Aligned_cols=72  Identities=26%  Similarity=0.584  Sum_probs=47.7

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eeee---------ccCCcEEEccCC-----cEEEeec
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSII---------HSGGRYSITTAG-----ALHIRDT   74 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~~---------~~~~r~~v~~~G-----~L~I~~v   74 (114)
                      ..|.+|.++.|.|.+.++. ..+ -++|.|-  +..+.     ....         .-.+||.|..+-     .|+|+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDY-YMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCC-ccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            3577899999999986542 222 6889874  22221     1100         113699886322     3999999


Q ss_pred             CCCCCCeeeEEEEeec
Q psy9140          75 GMEDSYIRYYCQTTHK   90 (114)
Q Consensus        75 ~~~D~gg~Y~C~a~n~   90 (114)
                      +.||+ +.|.|...+.
T Consensus        89 ~~eDT-AvYYCar~~~  103 (122)
T d1q9rb1          89 RAEDS-ATYYCARDHD  103 (122)
T ss_dssp             CGGGC-EEEEEEECCC
T ss_pred             ccCcc-eEEEEEecCC
Confidence            99999 5999987553

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.0013  Score=42.69  Aligned_cols=71  Identities=21%  Similarity=0.375  Sum_probs=47.0

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee------eccCCcEEEccC-----CcEEEeecCCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI------IHSGGRYSITTA-----GALHIRDTGME   77 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~------~~~~~r~~v~~~-----G~L~I~~v~~~   77 (114)
                      ..+.+|+++.|.|.+.++. ..+ -+.|.|-  |+.+.     .+.      ..-.+||.+..+     -.|+|++++.|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~-~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTN-GVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTC-CEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCC-ceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            3577899999999997643 222 6788874  33321     100      111469988532     24999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |+ +.|.|....
T Consensus        89 Dt-AvYYCAr~~   99 (117)
T d1c5db1          89 DT-AIYFCTRED   99 (117)
T ss_dssp             GC-EEEEEEECC
T ss_pred             cc-eEEEEeccC
Confidence            99 599996543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.79  E-value=0.0024  Score=41.76  Aligned_cols=71  Identities=21%  Similarity=0.489  Sum_probs=46.8

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++- ..+ -++|.|-  ++.+.     .+.       ..-.+||.|..+     -.|+|++++.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAH-TMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEeECCccCcCc-ccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            3577899999999986542 122 6788874  22221     110       011469988532     2499999999


Q ss_pred             CCCCeeeEEEEee
Q psy9140          77 EDSYIRYYCQTTH   89 (114)
Q Consensus        77 ~D~gg~Y~C~a~n   89 (114)
                      ||. +.|.|....
T Consensus        89 eDT-AvYYCAr~~  100 (125)
T d1op3h1          89 EDT-AIYYCARKG  100 (125)
T ss_dssp             GGC-EEEEEEEEC
T ss_pred             ccc-eeEeEeecc
Confidence            999 599997654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.77  E-value=0.0011  Score=43.35  Aligned_cols=71  Identities=24%  Similarity=0.410  Sum_probs=47.4

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~~   77 (114)
                      .|.+|++..|.|.+.++. ..+ .++|.|-  ++.+     |.+.       ..-.+||.|..+     --|+|++++.|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIE-YMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCC-EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCcccccc-cccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            466899999999996643 222 6788884  2222     1110       011479988532     24999999999


Q ss_pred             CCCeeeEEEEeec
Q psy9140          78 DSYIRYYCQTTHK   90 (114)
Q Consensus        78 D~gg~Y~C~a~n~   90 (114)
                      |+ +.|.|.....
T Consensus        89 Dt-AvYYCAr~~~  100 (124)
T d1zvya1          89 DT-AIYTCGATRK  100 (124)
T ss_dssp             GC-EEEEEEECSS
T ss_pred             cc-eEEEEeeccc
Confidence            99 5999987543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.74  E-value=0.0033  Score=41.09  Aligned_cols=70  Identities=23%  Similarity=0.386  Sum_probs=45.6

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeee-----eee-------eccCCcEEEcc---C--CcEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEA-----RSI-------IHSGGRYSITT---A--GALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~-----~~~-------~~~~~r~~v~~---~--G~L~I~~v~~~   77 (114)
                      .|.+|++..|.|.+.++. ..+ -+.|.|-  ++.+.     ...       ..-.+||.+..   .  --|+|++++.|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y-~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSN-CMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCS-EEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCCCCcCC-ceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            567899999999986542 222 6788874  22221     110       01136998853   1  23999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |+ +.|.|....
T Consensus        89 DT-AvYYCAr~~   99 (126)
T d1rjca1          89 DT-AMYYCAADT   99 (126)
T ss_dssp             GC-EEEEEEECC
T ss_pred             cC-ceeEEEeec
Confidence            99 599997654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.73  E-value=0.0017  Score=42.29  Aligned_cols=72  Identities=19%  Similarity=0.414  Sum_probs=47.5

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      -..+.+|++..|.|.+.++. ..+ -++|.|-  ++.+     |.+.       ..-.+||.+..+     -.|+|++++
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~-~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDY-YINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCC-ccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            34677899999999996542 222 6788874  2222     1110       112479988532     249999999


Q ss_pred             CCCCCeeeEEEEee
Q psy9140          76 MEDSYIRYYCQTTH   89 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n   89 (114)
                      .||. +.|.|....
T Consensus        88 ~eDT-AvYYCAr~~  100 (120)
T d1ad9b1          88 SEDT-AFYFCAREK  100 (120)
T ss_dssp             GGGC-EEEEEEEEB
T ss_pred             CCcc-eEEEEEEcC
Confidence            9999 599997643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.73  E-value=0.003  Score=40.86  Aligned_cols=71  Identities=24%  Similarity=0.419  Sum_probs=46.0

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      -..+.+|+++.|.|.+.++- ..+ -++|.|-  ++.+     |.+.       ..-.+||.+..+     -.|+|++++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSS-YINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTC-EEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEccccCCCC-CCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            34577899999999986542 222 6788773  3322     1110       011358877531     249999999


Q ss_pred             CCCCCeeeEEEEe
Q psy9140          76 MEDSYIRYYCQTT   88 (114)
Q Consensus        76 ~~D~gg~Y~C~a~   88 (114)
                      .||+ +.|.|...
T Consensus        88 ~eDt-AvYYCAr~   99 (118)
T d1ct8b1          88 TEDS-AIYYCARY   99 (118)
T ss_dssp             GGGC-EEEEEEEE
T ss_pred             CCcc-eEEEEeee
Confidence            9999 59999654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.73  E-value=0.0027  Score=41.67  Aligned_cols=73  Identities=22%  Similarity=0.403  Sum_probs=48.1

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      -..+.+|.+..|.|.+.++. ..+ -++|.|-  ++.+     |.+.       ..-.+||.|..+     --|+|++++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRY-SFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGE-EEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCccCC-CcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            34578899999999996652 111 6788663  2222     1100       112479998531     249999999


Q ss_pred             CCCCCeeeEEEEeec
Q psy9140          76 MEDSYIRYYCQTTHK   90 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~   90 (114)
                      .||. +.|.|.....
T Consensus        88 ~eDT-A~YYCAr~~~  101 (128)
T d2nxyd1          88 SDDT-AVYFCAGVYE  101 (128)
T ss_dssp             GGGC-EEEEEEEEEC
T ss_pred             ccCc-eEEEEeEEec
Confidence            9999 5999987653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.72  E-value=0.001  Score=43.69  Aligned_cols=90  Identities=22%  Similarity=0.365  Sum_probs=54.1

Q ss_pred             EEEeCCeEEEEeecCCCC--CCcceEEEeeC--Ceeeeee-----e------eccCCcEEEcc--CC---cEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN--HNLLLIAWLRE--GVSEARS-----I------IHSGGRYSITT--AG---ALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~--~~~~~vsW~kd--~~~~~~~-----~------~~~~~r~~v~~--~G---~L~I~~v~~~   77 (114)
                      .+.+|++..|.|.+.++-  ..+ -++|.|-  +..+...     .      ..-.+||.+..  +.   -|+|++++.|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y-~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGY-YWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSS-EEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEecccccCCC-cceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            567899999999986542  223 5788873  4333110     0      01135877643  22   3999999999


Q ss_pred             CCCeeeEEEEeeccCCcE-Ee---CCCeEEEEeccc
Q psy9140          78 DSYIRYYCQTTHKLTGER-KI---SPPSQVMVSEIA  109 (114)
Q Consensus        78 D~gg~Y~C~a~n~l~~~~-~~---s~~a~L~V~~~~  109 (114)
                      |. +.|.|......+... ..   ...+.|+|..++
T Consensus        90 Dt-AvYyCAr~~~~~~~~~~~d~WGqGT~VTVsSa~  124 (127)
T d3cx5j1          90 DT-ATYYCARSEYYSVTGYAMDYWGQGTTVTVSSAW  124 (127)
T ss_dssp             GC-EEEEEEEEEEETTTEEEEEEECCCEEEEECSCC
T ss_pred             cc-eEEEeeeecccCCCCCcccccCcCEEEEEECcC
Confidence            99 599997543222111 01   335667776554

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.69  E-value=0.0051  Score=40.67  Aligned_cols=88  Identities=23%  Similarity=0.360  Sum_probs=54.0

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|+++.|.|.+.++. ..+ -+.|.|-  |..+     |.+.       ..-.+||.+.-+     -.|+|++++.
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y-~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSY-HMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTS-CEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCC-ceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            4578999999999996542 223 6788864  2222     1111       011479988532     2499999999


Q ss_pred             CCCCeeeEEEEeeccCCcEEeCCCeEEEEec
Q psy9140          77 EDSYIRYYCQTTHKLTGERKISPPSQVMVSE  107 (114)
Q Consensus        77 ~D~gg~Y~C~a~n~l~~~~~~s~~a~L~V~~  107 (114)
                      ||+ +.|.|.....- .---=...+.++|..
T Consensus        89 eDT-AvYYCAr~~~~-~~d~WGqGT~VTVsS  117 (135)
T d1ieha_          89 EDT-AVYYCAKYSGG-ALDAWGQGTQVTVSS  117 (135)
T ss_dssp             SSC-EEEEEEEBSSS-SBCCCSCCEEEEECS
T ss_pred             ccc-eeeEEEEecCC-ccceeCCCEEEEEEC
Confidence            999 59999765421 100013356666653

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.67  E-value=0.0025  Score=41.32  Aligned_cols=71  Identities=23%  Similarity=0.455  Sum_probs=46.3

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEcc--CC---cEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITT--AG---ALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~--~G---~L~I~~v~~   76 (114)
                      ..+.+|.++.|.|.+.++- ..+ -++|.|-  +..+     |.+.       ..-.+||.|..  +.   -|+|++++.
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDF-YMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCC-ceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            4567899999999996642 122 6788774  2222     1100       01146998853  22   399999999


Q ss_pred             CCCCeeeEEEEee
Q psy9140          77 EDSYIRYYCQTTH   89 (114)
Q Consensus        77 ~D~gg~Y~C~a~n   89 (114)
                      ||+ +.|.|....
T Consensus        89 eDT-AvYYCAr~~  100 (119)
T d1rz7h1          89 EDT-AVYYCAADP  100 (119)
T ss_dssp             GGC-EEEEEEECT
T ss_pred             ccc-eEEEEeecC
Confidence            999 599996643

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.64  E-value=0.0034  Score=40.62  Aligned_cols=71  Identities=21%  Similarity=0.438  Sum_probs=46.9

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceeeeee-----------eeccCCcEEEccC-----CcEEEeecCCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSEARS-----------IIHSGGRYSITTA-----GALHIRDTGME   77 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~~~~-----------~~~~~~r~~v~~~-----G~L~I~~v~~~   77 (114)
                      ..+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+...           ...-.+||.+..+     -.|+|++++.|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~e   88 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTY-GMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSE   88 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTS-EEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCcccCC-CcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCC
Confidence            3567899999999996642 223 6788874  2222110           0111468888532     24999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |. +.|.|....
T Consensus        89 Dt-A~YyCAr~~   99 (118)
T d1lo4h1          89 DT-AIYYCARGT   99 (118)
T ss_dssp             GC-EEEEEEEEE
T ss_pred             cc-eEEEecccC
Confidence            99 599996543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.62  E-value=0.0019  Score=42.35  Aligned_cols=70  Identities=23%  Similarity=0.436  Sum_probs=46.4

Q ss_pred             EEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCCC
Q psy9140          18 FVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGME   77 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~~   77 (114)
                      .+.+|+++.|.|.+.++. ..+ -+.|.|-  +..+     |...       ..-.+||.+..+     -.|+|++++.|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDY-AMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCccccCC-cceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            467899999999996642 122 6788773  2222     1100       111479988642     24999999999


Q ss_pred             CCCeeeEEEEee
Q psy9140          78 DSYIRYYCQTTH   89 (114)
Q Consensus        78 D~gg~Y~C~a~n   89 (114)
                      |+ +.|.|....
T Consensus        90 Dt-avYYCAr~~  100 (126)
T d1dfbh1          90 DM-ALYYCVKGR  100 (126)
T ss_dssp             GC-EEEEEEEEE
T ss_pred             cc-eEEEEEecc
Confidence            99 599997654

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.60  E-value=0.0014  Score=43.02  Aligned_cols=71  Identities=21%  Similarity=0.368  Sum_probs=46.5

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|.+..|.|.+.++. ..+ .++|.|-  +..+     |.+.       ..-.+||.+..+     --|+|++++.
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~   88 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSY-AMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP   88 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEECCCCccCC-ceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence            3567899999999996642 122 6788773  2222     1110       011479988532     2499999999


Q ss_pred             CCCCeeeEEEEee
Q psy9140          77 EDSYIRYYCQTTH   89 (114)
Q Consensus        77 ~D~gg~Y~C~a~n   89 (114)
                      ||+ +.|.|....
T Consensus        89 eDT-A~YYCAr~~  100 (127)
T d2fb4h1          89 EDT-GVYFCARDG  100 (127)
T ss_dssp             GGC-EEEEEEEEC
T ss_pred             cce-eEEEEEEec
Confidence            999 599997543

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.001  Score=40.98  Aligned_cols=50  Identities=30%  Similarity=0.614  Sum_probs=32.0

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCC-CCCCeeeEEE
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGM-EDSYIRYYCQ   86 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~-~D~gg~Y~C~   86 (114)
                      ..|.++.|.|..+.  .+  .|.|.||+..-   ....+.++.|         .|.. .|+ |.|+|.
T Consensus        19 ~~~~~V~L~C~t~e--E~--~I~W~kd~~se---~~~~GntltV---------~VkE~~~a-GnYTCh   69 (87)
T d3d85d1          19 APGEMVVLTCDTPE--ED--GITWTLDQSSE---VLGSGKTLTI---------QVKEFGDA-GQYTCH   69 (87)
T ss_dssp             CCCEEEEEECSSSC--CS--SCEEEETTCCC---CCEESSEEEE---------EECSGGGC-EEEEEE
T ss_pred             CCccEEEEecCCCc--cc--ccEEeeCCccc---cccCCCEEEE---------EEEeccCC-cceeEe
Confidence            36789999998743  22  68999997631   1233333333         3544 687 599995

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.38  E-value=0.0042  Score=40.66  Aligned_cols=73  Identities=21%  Similarity=0.401  Sum_probs=47.9

Q ss_pred             eeEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecC
Q psy9140          16 NTFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        16 d~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      -..+.+|+++.|.|.+.++- ..+ -++|.|-  +..+     |.+.       ..-.+||.+..+     --|+|++++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~   87 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTY-ALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLR   87 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTS-CEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCC-CeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccC
Confidence            34566899999999996542 222 5788863  3222     1111       011479888632     249999999


Q ss_pred             CCCCCeeeEEEEeec
Q psy9140          76 MEDSYIRYYCQTTHK   90 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n~   90 (114)
                      .||+ +.|.|.....
T Consensus        88 ~eDT-avYYCAR~~~  101 (127)
T d2fx7h1          88 PEDT-AVYYCAREGT  101 (127)
T ss_dssp             GGGC-EEEEEEEEEE
T ss_pred             cccc-eEEEEeeccc
Confidence            9999 5999986543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.20  E-value=0.0014  Score=42.54  Aligned_cols=69  Identities=23%  Similarity=0.404  Sum_probs=45.1

Q ss_pred             eEEEeCCeEEEEeecCCCC-CCcceEEEeeC--Ceee-----eeee-------eccCCcEEEccC-----CcEEEeecCC
Q psy9140          17 TFVLRGNIAVLQCNIPAYN-HNLLLIAWLRE--GVSE-----ARSI-------IHSGGRYSITTA-----GALHIRDTGM   76 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~-~~~~~vsW~kd--~~~~-----~~~~-------~~~~~r~~v~~~-----G~L~I~~v~~   76 (114)
                      ..+.+|++..|.|.+.++. ..+ .++|.|-  +..+     |.+.       ..-.+||.|..+     --|+|++++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y-~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~   88 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSS-WINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP   88 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTS-EECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECCCCCcCC-ccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC
Confidence            4678999999999986532 222 6788873  2211     1000       001369998632     2499999999


Q ss_pred             CCCCeeeEEEE
Q psy9140          77 EDSYIRYYCQT   87 (114)
Q Consensus        77 ~D~gg~Y~C~a   87 (114)
                      ||. +.|.|..
T Consensus        89 eDT-AvYYCAr   98 (117)
T d1b2wh1          89 EDT-AVYYCAR   98 (117)
T ss_dssp             GGC-EEEECCE
T ss_pred             Ccc-eEEEEcc
Confidence            999 5999954

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.06  E-value=0.0029  Score=41.69  Aligned_cols=70  Identities=24%  Similarity=0.480  Sum_probs=46.2

Q ss_pred             EEEeCCeEEEEeecCCCCC-CcceEEEeeC--Ceeee-----eee---------eccCCcEEEccC-----CcEEEeecC
Q psy9140          18 FVLRGNIAVLQCNIPAYNH-NLLLIAWLRE--GVSEA-----RSI---------IHSGGRYSITTA-----GALHIRDTG   75 (114)
Q Consensus        18 ~v~~G~~AvL~C~~~~~~~-~~~~vsW~kd--~~~~~-----~~~---------~~~~~r~~v~~~-----G~L~I~~v~   75 (114)
                      .+.+|++..|.|.+.++-- .+ -++|.|-  ++.+.     .+.         ..-.+||.+..+     -.|+|++++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~-~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDV-WLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCCCcCC-cccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            5678999999999866431 12 6788773  22221     000         012468988532     249999999


Q ss_pred             CCCCCeeeEEEEee
Q psy9140          76 MEDSYIRYYCQTTH   89 (114)
Q Consensus        76 ~~D~gg~Y~C~a~n   89 (114)
                      .||+ +.|.|....
T Consensus        90 ~eDT-AvYYCAR~~  102 (131)
T d3c2ah1          90 TEDT-AVYSCTTDG  102 (131)
T ss_dssp             GGGC-EEEEEEEEE
T ss_pred             cCCc-eEEEEeccc
Confidence            9999 599997663

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.058  Score=33.25  Aligned_cols=86  Identities=15%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             eEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEE-ccCC-----cEEEeecCCCCCCeeeEEEEeec
Q psy9140          17 TFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSI-TTAG-----ALHIRDTGMEDSYIRYYCQTTHK   90 (114)
Q Consensus        17 ~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v-~~~G-----~L~I~~v~~~D~gg~Y~C~a~n~   90 (114)
                      -.+..|+.--|+|-+. +-...+.++|-|-.+..-.+.-....++.- ..++     -|+..-+-.+|.| +|+|.|.-.
T Consensus        13 hs~~~G~~f~leCPVk-YC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnG-sYrCSanf~   90 (104)
T d1xaua_          13 HSAWTGELFKIECPVK-YCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNG-SYSCSTNFN   90 (104)
T ss_dssp             EEECTTSCEEEEEEEE-CSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCE-EEEEEEEET
T ss_pred             eeEecCCceEecCcch-hhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCC-ceEEecCCC
Confidence            3688999999999974 233333789999666432211111123321 1222     2888899999995 999999854


Q ss_pred             cCCcEEeCCCeEEEEe
Q psy9140          91 LTGERKISPPSQVMVS  106 (114)
Q Consensus        91 l~~~~~~s~~a~L~V~  106 (114)
                        .+...|-...|.|+
T Consensus        91 --s~vieSHSvti~Vt  104 (104)
T d1xaua_          91 --SQVINSHSVTIHVR  104 (104)
T ss_dssp             --TEEEECCCEEEEEC
T ss_pred             --hhheecceEEEEeC
Confidence              34455667777663

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.042  Score=33.07  Aligned_cols=54  Identities=17%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +-.+++|.|....    . .|.|+||+..+-+  +..+       +.+|-+=+.-. |-.|.|.|....
T Consensus        16 ~dg~V~L~Cn~~~----k-~i~W~kdg~~i~~--~~~~-------~ktlnLG~~~~-DPRG~Y~C~~~~   69 (81)
T d1sy6a1          16 EDGSVLLTCDAEA----K-NITWFKDGKMIGF--LTED-------KKKWNLGSNAK-DPRGMYQCKGSQ   69 (81)
T ss_dssp             SSSEEEEEECSCS----S-EEEEEETTEEEEE--EESS-------CCCEEEEEGGG-CCEEEEEEESSS
T ss_pred             cCCeEEEEeCCCC----c-EEEEecCCeEeec--ccCC-------cceeecCCccc-CCCcceEcCCCC
Confidence            4578999997521    1 7999999986521  1111       23344444333 445799997654

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.042  Score=33.39  Aligned_cols=54  Identities=19%  Similarity=0.465  Sum_probs=32.8

Q ss_pred             eCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          21 RGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        21 ~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      +-.+++|.|....   .  .|.|+||+..+..  ....       ..+|-+=+. ..|-.|+|.|.+..
T Consensus        21 ~dGsV~L~Cn~~~---k--~i~W~kdg~~i~~--~~~~-------~ktlnLG~~-~~DPRGiY~C~g~~   74 (86)
T d1jbja1          21 GDGSVLLTCGLTD---K--TIKWLKDGSIISP--LNAT-------KNTWNLGNN-AKDPRGTYQCQGAK   74 (86)
T ss_dssp             SSCEEEEECSSSC---S--CEEEEETTEECCC--SSCC-------SSCCEEEET-TSCCEEEEEEEESS
T ss_pred             cCCeEEEEeCCCC---c--EEEEecCCceecc--cccc-------cceeecCCc-ccCCCcceEcCCCc
Confidence            5678999997622   1  6999999987521  1111       122333333 34555799997664

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.22  Score=29.22  Aligned_cols=47  Identities=23%  Similarity=0.375  Sum_probs=26.6

Q ss_pred             CeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEee
Q psy9140          23 NIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTH   89 (114)
Q Consensus        23 ~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n   89 (114)
                      ..++|.|..        .|.|++++..+.    ..+.       -.|-+=+ ...|-.|.|.|.+..
T Consensus        10 ~~V~L~Cn~--------si~W~k~~~~~~----~~~~-------k~lnLG~-~~~DPRG~Y~C~~~e   56 (74)
T d1xiwb_          10 DRVFVNCNT--------SITWVEGTVGTL----LSDI-------TRLDLGK-RILDPRGIYRCNGTD   56 (74)
T ss_dssp             TEEEEECSS--------CEEEEEECCCEE----EGGG-------TEEEEEE-GGGCCEEEEEEC---
T ss_pred             CeEEEEccC--------eeEEecCCcccc----cCCc-------cEeecCC-cccCCCcceEeCCcc
Confidence            389999952        589999976431    1111       2232222 334555799998774

>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=1  Score=26.70  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=46.8

Q ss_pred             cceeEEEeCCeEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEEeeccCC
Q psy9140          14 TGNTFVLRGNIAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQTTHKLTG   93 (114)
Q Consensus        14 ~~d~~v~~G~~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a~n~l~~   93 (114)
                      -++.++.+|..+...|.+.+  ..  .+.  -+|..    ....+.+-      .|++ |++.+|.|..++|.|.=...|
T Consensus         8 lsep~v~eGt~VtVtC~a~~--~a--~v~--L~G~p----~~~Pg~~a------ql~L-nAseeDd~R~F~C~A~LeV~G   70 (84)
T d2oz4a1           8 LTKPEVSEGTEVTVKCEAHP--RA--KVT--LNGVP----AQPLGPRA------QLLL-KATPEDNGRSFSCSATLEVAG   70 (84)
T ss_dssp             ESCSEEETTCEEEEEEECCT--TS--EEE--ESSCS----SSCCSSEE------CCEE-ECCGGGTTEEEEEEEEEECSS
T ss_pred             eccCcCCCCCEEEEEEecCC--Cc--EEE--EccCC----CCCCCCce------EEEE-ecCcccCCcEEEEEEEEEECc
Confidence            34567899999999999843  12  444  24442    22223222      2333 577888888999999988888


Q ss_pred             cEEeCC-CeEEEE
Q psy9140          94 ERKISP-PSQVMV  105 (114)
Q Consensus        94 ~~~~s~-~a~L~V  105 (114)
                      +.-.-+ ...|.|
T Consensus        71 ~~L~Knqt~eL~V   83 (84)
T d2oz4a1          71 QLIHKNQTRELRV   83 (84)
T ss_dssp             SEEEEEEEEEEEE
T ss_pred             EEEEecceEEEEe
Confidence            743333 444444

>d1iama2 b.1.1.4 (A:1-82) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.81  Score=27.15  Aligned_cols=79  Identities=13%  Similarity=0.266  Sum_probs=48.1

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCCCCCcc--eEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEEE
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAYNHNLL--LIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQT   87 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~~~~~~--~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~a   87 (114)
                      -.++|++..|-+|.+..+.|.+.=.-+...  ..+|.|...      +..+.++.     ..+++||+. |.  .-.|..
T Consensus         2 vsv~P~~~~V~~GgS~~VNCStsC~~p~~~gLET~L~K~e~------l~~g~~Wk-----~f~LsnV~~-ds--~~~C~~   67 (82)
T d1iama2           2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL------LLPGNNRK-----VYELSNVQE-DS--QPMCYS   67 (82)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEE------CSSSSSEE-----EEEEEEECS-CB--CCEEEE
T ss_pred             ceecCCcceeCCCCcEEEEeeCCCCCCCcceEEEEcccccc------cCCCCCEE-----EEEEecccC-CC--EEEEEE
Confidence            358999999999999999999822111111  344544311      12334442     378999988 64  567988


Q ss_pred             eeccCCcEEeCCCeEEEE
Q psy9140          88 THKLTGERKISPPSQVMV  105 (114)
Q Consensus        88 ~n~l~~~~~~s~~a~L~V  105 (114)
                      .=.  +. +.+..++|+|
T Consensus        68 ~C~--g~-Q~~~~~~ITV   82 (82)
T d1iama2          68 NCP--DG-QSTAKTFLTV   82 (82)
T ss_dssp             ECS--SC-EEEEECEEEE
T ss_pred             EcC--Cc-eEEEEEEEEC
Confidence            853  33 2344556654

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=86.53  E-value=0.25  Score=28.36  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=25.8

Q ss_pred             eEEEEeecCCCCCCcceEEEeeCCeeeeeeeeccCCcEEEccCCcEEEeecCCCCCCeeeEEE
Q psy9140          24 IAVLQCNIPAYNHNLLLIAWLREGVSEARSIIHSGGRYSITTAGALHIRDTGMEDSYIRYYCQ   86 (114)
Q Consensus        24 ~AvL~C~~~~~~~~~~~vsW~kd~~~~~~~~~~~~~r~~v~~~G~L~I~~v~~~D~gg~Y~C~   86 (114)
                      .++|.|..        .|.|+||+..+.    ..+.+       +|-+= -...|-.|.|.|.
T Consensus        10 kV~L~Cn~--------sI~w~k~~~~~~----~~~~k-------tlnLG-~~~~DPRGiY~C~   52 (66)
T d1xmwa2          10 KVILKCNS--------SITLLQGTAGQE----VSDNK-------TLNLG-KRIEDPRGMYQCG   52 (66)
T ss_dssp             EEEEECSS--------SCEEEEECCCCB----SSSSS-------BBCCB-CSTTCCEEEEECC
T ss_pred             eEEEEccC--------eEEEccCccccc----cCCCc-------EEeCC-CcccCCCcceECC
Confidence            88999953        489999976431    12222       12222 2345556899994

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=1.7  Score=26.56  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             eeeccceeEEEeCCeEEEEeecCCC----CCCcc-eEEEeeCCeeeeeeeeccCCcEEEccCC--cEEEeecCCCCCCee
Q psy9140          10 YEINTGNTFVLRGNIAVLQCNIPAY----NHNLL-LIAWLREGVSEARSIIHSGGRYSITTAG--ALHIRDTGMEDSYIR   82 (114)
Q Consensus        10 ~~v~~~d~~v~~G~~AvL~C~~~~~----~~~~~-~vsW~kd~~~~~~~~~~~~~r~~v~~~G--~L~I~~v~~~D~gg~   82 (114)
                      =.+.|++..|..|.+.+.-|.+...    ..... .+-|.-+++.+      ...+|.+....  ++.|.++...-+  .
T Consensus         6 G~I~p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~------P~~qy~~ln~T~~Svtl~~l~~~~a--~   77 (100)
T d1i1ra1           6 GYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI------PKEQYTIINRTASSVTFTDIASLNI--Q   77 (100)
T ss_dssp             EEEESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEEC------CGGGCEEEETTEEEEEECSCCCSEE--E
T ss_pred             ceEecCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEEC------CchheEccCCcEEEEEEccccCCcc--e
Confidence            3588999999999999999999431    01123 79999999863      35688887422  477777777765  5


Q ss_pred             eEEEEe
Q psy9140          83 YYCQTT   88 (114)
Q Consensus        83 Y~C~a~   88 (114)
                      -+|-..
T Consensus        78 L~C~~l   83 (100)
T d1i1ra1          78 LTCNIL   83 (100)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            556444

>d2j88h1 b.1.1.2 (H:113-180) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.14  E-value=0.049  Score=31.27  Aligned_cols=28  Identities=14%  Similarity=0.401  Sum_probs=12.9

Q ss_pred             EeCCeEEEEeecCCCCCCcceEEEeeCC
Q psy9140          20 LRGNIAVLQCNIPAYNHNLLLIAWLREG   47 (114)
Q Consensus        20 ~~G~~AvL~C~~~~~~~~~~~vsW~kd~   47 (114)
                      ..++.|.|-|.+.+|....+.++|..++
T Consensus        18 ~~~~~vtl~CL~~gF~P~~i~v~W~~~~   45 (68)
T d2j88h1          18 QTNSMVTLGCLVKGYFPEPVTVTWNSGS   45 (68)
T ss_dssp             ---------CEEEEEBSSCCCCCSCC--
T ss_pred             cCCCeEEEEEEEeceECCCcEEEECCCC
Confidence            4678899999998876555588995443