Psyllid ID: psy9147

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSIDPDEESNTYNNTTTYSSTGEVEDDNQMQYTDDNEEEDDDGDASGSISPVNSISTQSSGQVPKVGRASSRVIPKYLHN
ccccEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEccEEEEEEEEEEEcccHHHHHHHHHccccccEEEEccccHHHHHHHHHHHEEEEEEEEcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEEEEccccHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MANELFCLKWNNYTSNIITEldslrtdgdlvdvtilcdgrkiTAHKVILSACSSYFRTifrenpcqhpvvilkdinyeDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLagasnmmgdnesqiqnedsrsmdsslvnqhdrhslsgvgmdkdsidpdeesntynntttysstgeveddnqmqytddneeedddgdasgsispvnsistqssgqvpkvgrassrvipkylhn
MANELFCLKWNNYTSNIITEldslrtdgdLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHdrhslsgvgmdkdsidpdeesntynntttysstgeveddnQMQYTDDNEEEDDDGDASGSISpvnsistqssgqvpkvgrassrvipkylhn
MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSIDPDEEsntynntttysstGEVEDDNQMQYTddneeedddgdASGSISPVNSISTQSSGQVPKVGRASSRVIPKYLHN
****LFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKT***********************************************************************************************************************************
**NELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLA*************************************************************************************************************************
MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNES****************QHDRHSLSGVGMDKDSIDPDEESNTYNNTTTYSSTGEVEDDNQMQY***************SISPVN**************RASSRVIPKYLHN
**NELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAG************************************************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSSLVNQHDRHSLSGVGMDKDSIDPDEESNTYNNTTTYSSTGEVEDDNQMQYTDDNEEEDDDGDASGSISPVNSISTQSSGQVPKVGRASSRVIPKYLHN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query236 2.2.26 [Sep-21-2011]
Q01295 727 Broad-complex core protei no N/A 0.533 0.173 0.445 1e-33
Q24174 904 Protein abrupt OS=Drosoph no N/A 0.466 0.121 0.518 8e-33
Q9W0K7 977 Protein bric-a-brac 1 OS= no N/A 0.487 0.117 0.469 3e-31
P42282 813 Protein tramtrack, alpha no N/A 0.483 0.140 0.473 5e-31
P17789 643 Protein tramtrack, beta i no N/A 0.483 0.177 0.473 1e-30
Q24206 880 Broad-complex core protei no N/A 0.533 0.143 0.445 1e-29
Q9W0K4 1067 Protein bric-a-brac 2 OS= no N/A 0.5 0.110 0.449 3e-29
Q7KRI2127 Longitudinals lacking pro no N/A 0.466 0.866 0.463 4e-29
Q8IN81 955 Sex determination protein no N/A 0.5 0.123 0.457 9e-29
P42283 891 Longitudinals lacking pro no N/A 0.466 0.123 0.472 2e-28
>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila melanogaster GN=br PE=1 SV=2 Back     alignment and function desciption
 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 91/137 (66%), Gaps = 11/137 (8%)

Query: 6   FCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPC 65
           FCL+WNNY S+I +  ++LR D   VDVT+ C+GR I AH+V+LSACS YFR + +  PC
Sbjct: 7   FCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKSTPC 66

Query: 66  QHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNE 125
           +HPV++L+D+N+ D+ A++ F+Y G V + +  + SFLKTAE L++ GL           
Sbjct: 67  KHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGL----------- 115

Query: 126 SQIQNEDSRSMDSSLVN 142
           +Q Q ED+ S  + + N
Sbjct: 116 TQQQAEDTHSHLAQIQN 132
Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.
Drosophila melanogaster (taxid: 7227)
>sp|Q24174|ABRU_DROME Protein abrupt OS=Drosophila melanogaster GN=ab PE=1 SV=2 Back     alignment and function description
>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2 Back     alignment and function description
>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3 Back     alignment and function description
>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2 Back     alignment and function description
>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Drosophila melanogaster GN=br PE=1 SV=2 Back     alignment and function description
>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2 Back     alignment and function description
>sp|Q7KRI2|LOLAL_DROME Longitudinals lacking protein-like OS=Drosophila melanogaster GN=lolal PE=1 SV=1 Back     alignment and function description
>sp|Q8IN81|FRU_DROME Sex determination protein fruitless OS=Drosophila melanogaster GN=fru PE=1 SV=1 Back     alignment and function description
>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
328726142 376 PREDICTED: zinc finger and BTB domain-co 0.512 0.321 0.661 2e-44
357622462 456 putative broad [Danaus plexippus] 0.495 0.256 0.593 6e-39
307205693 467 Broad-complex core protein isoform 6 [Ha 0.627 0.316 0.425 8e-37
340727383 455 PREDICTED: hypothetical protein LOC10065 0.525 0.272 0.483 1e-36
380023234 475 PREDICTED: uncharacterized protein LOC10 0.525 0.261 0.483 2e-36
328790497 484 PREDICTED: hypothetical protein LOC41216 0.525 0.256 0.483 2e-36
340727381 484 PREDICTED: hypothetical protein LOC10065 0.525 0.256 0.483 2e-36
170056553 465 conserved hypothetical protein [Culex qu 0.618 0.313 0.469 5e-36
322786994 473 hypothetical protein SINV_06487 [Solenop 0.525 0.262 0.475 8e-36
332030135 473 Broad-complex core protein isoform 6 [Ac 0.525 0.262 0.475 8e-36
>gi|328726142|ref|XP_003248764.1| PREDICTED: zinc finger and BTB domain-containing protein 6-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 104/121 (85%)

Query: 1   MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF 60
           MA + FCLKWNNY  N++TELDSLRT  DLVDVT+ CDG+   AHKV+LS CS+YFR +F
Sbjct: 1   MAADHFCLKWNNYPLNMVTELDSLRTSEDLVDVTLSCDGQLFKAHKVVLSMCSTYFRNVF 60

Query: 61  RENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNM 120
           ++NPC+HPVVILKDIN +D++A+L FVYQGTVYIS+ +++SFL+TAE LQI+GLAGA++ 
Sbjct: 61  KDNPCRHPVVILKDINQDDVQALLNFVYQGTVYISEKKLESFLRTAELLQIRGLAGAAST 120

Query: 121 M 121
           +
Sbjct: 121 I 121

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357622462|gb|EHJ73932.1| putative broad [Danaus plexippus] Back     alignment and taxonomy information
>gi|307205693|gb|EFN83955.1| Broad-complex core protein isoform 6 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340727383|ref|XP_003402024.1| PREDICTED: hypothetical protein LOC100651778 isoform 2 [Bombus terrestris] gi|350402787|ref|XP_003486604.1| PREDICTED: hypothetical protein LOC100744799 isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|380023234|ref|XP_003695430.1| PREDICTED: uncharacterized protein LOC100869307 [Apis florea] Back     alignment and taxonomy information
>gi|328790497|ref|XP_395624.4| PREDICTED: hypothetical protein LOC412161 [Apis mellifera] Back     alignment and taxonomy information
>gi|340727381|ref|XP_003402023.1| PREDICTED: hypothetical protein LOC100651778 isoform 1 [Bombus terrestris] gi|350402785|ref|XP_003486603.1| PREDICTED: hypothetical protein LOC100744799 isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|170056553|ref|XP_001864081.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876178|gb|EDS39561.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|322786994|gb|EFZ13218.1| hypothetical protein SINV_06487 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332030135|gb|EGI69929.1| Broad-complex core protein isoform 6 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
FB|FBgn0263108 798 BtbVII "BTB-protein-VII" [Dros 0.555 0.164 0.474 1.6e-30
FB|FBgn0000210 880 br "broad" [Drosophila melanog 0.521 0.139 0.476 5.2e-30
FB|FBgn0264442 904 ab "abrupt" [Drosophila melano 0.601 0.157 0.431 9.6e-30
FB|FBgn0264981 1089 mamo "maternal gene required f 0.504 0.109 0.483 4.1e-29
FB|FBgn0004870 977 bab1 "bric a brac 1" [Drosophi 0.504 0.121 0.453 4.7e-29
FB|FBgn0025525 1067 bab2 "bric a brac 2" [Drosophi 0.661 0.146 0.389 1.1e-28
FB|FBgn0003870 813 ttk "tramtrack" [Drosophila me 0.483 0.140 0.473 5.5e-28
FB|FBgn0022238127 lolal "lola like" [Drosophila 0.483 0.897 0.447 1.7e-27
FB|FBgn0029822 553 CG12236 [Drosophila melanogast 0.461 0.197 0.495 1.1e-26
FB|FBgn0004652 955 fru "fruitless" [Drosophila me 0.5 0.123 0.457 1.2e-25
FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 346 (126.9 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 64/135 (47%), Positives = 95/135 (70%)

Query:     1 MANELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIF 60
             M+ + FCL+WNN+  N I+   SL  +G LVDVT+  +GR++ AHK++LSACSSYF+ +F
Sbjct:     1 MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALF 60

Query:    61 RENPCQHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNM 120
               NPCQHP+VILKD+ Y+D++ ++ F+Y G V +S+ ++   LKTAE L+IKGLA     
Sbjct:    61 TTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAE---- 116

Query:   121 MGDNESQIQNEDSRS 135
             M  + + +   DS+S
Sbjct:   117 MPTDPANLTKSDSKS 131
GO:0003677 "DNA binding" evidence=IEA;NAS
FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0264442 ab "abrupt" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0029822 CG12236 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
pfam00651101 pfam00651, BTB, BTB/POZ domain 1e-30
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-23
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 2e-07
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 7e-05
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score =  108 bits (273), Expect = 1e-30
 Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 21  LDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDI 80
           L+ LR +G+L DVT++   ++  AHK +L+ACS YF+ +F  N      + L+D++ ED 
Sbjct: 1   LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVE--ITLEDVSPEDF 58

Query: 81  EAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
           EA+L F+Y G + I++  +D  L  A+ LQI  L
Sbjct: 59  EALLEFIYTGKLEITEENVDDLLALADKLQIPAL 92

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 236
KOG4441|consensus 571 99.95
PHA02713 557 hypothetical protein; Provisional 99.94
PHA02790 480 Kelch-like protein; Provisional 99.92
PHA03098 534 kelch-like protein; Provisional 99.91
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.86
KOG4350|consensus 620 99.8
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.76
KOG2075|consensus 521 99.7
KOG4591|consensus280 99.61
KOG4682|consensus 488 99.1
KOG0783|consensus 1267 99.03
KOG0783|consensus 1267 98.74
KOG2838|consensus401 98.35
KOG2838|consensus401 98.18
KOG2716|consensus230 98.1
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 98.0
KOG0511|consensus 516 97.62
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.33
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 96.97
KOG3473|consensus112 96.94
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.87
KOG0511|consensus516 96.45
KOG1724|consensus162 96.4
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 96.06
KOG2714|consensus 465 96.06
KOG1665|consensus302 95.64
KOG1987|consensus297 95.55
KOG2715|consensus210 94.06
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 92.08
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 90.25
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 87.19
KOG3840|consensus 438 84.73
>KOG4441|consensus Back     alignment and domain information 
Probab=99.95  E-value=2.2e-28  Score=232.29  Aligned_cols=179  Identities=25%  Similarity=0.353  Sum_probs=153.0

Q ss_pred             cceeeecCcchHHHHHHHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhc--CCCCCCCeEEeCCCCHHHHH
Q psy9147           4 ELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFR--ENPCQHPVVILKDINYEDIE   81 (236)
Q Consensus         4 ~~~~~~~~~h~~~ll~~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~--~~~~~~~~i~l~~v~~~~f~   81 (236)
                      ....+..+.|...+++.|+.+|.++.+|||++.+++++|+|||.||||+||||++||.  +.|+.+.+|.+.++++.+++
T Consensus        10 ~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~   89 (571)
T KOG4441|consen   10 STSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLE   89 (571)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999997  48999999999999999999


Q ss_pred             HHHHHHhCCccccCHHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCccchhcccchh------hhchhc--------cc
Q psy9147          82 AVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQNEDSRSMDSS------LVNQHD--------RH  147 (236)
Q Consensus        82 ~~L~ylYtg~i~i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~~~------~~~~~~--------~~  147 (236)
                      .+|+|+|||++.|+.++|++|+.+|.+|||..++++|.+||...+...||......+.      +...+.        ..
T Consensus        90 ~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v  169 (571)
T KOG4441|consen   90 LLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEV  169 (571)
T ss_pred             HHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999885321111      111110        00


Q ss_pred             -------ccc----cCCcCCCCCCCCcchhhhHhhhhccccCcccc
Q psy9147         148 -------SLS----GVGMDKDSIDPDEESNTYNNTTTYSSTGEVED  182 (236)
Q Consensus       148 -------~l~----~~~l~~d~l~~~~~~~~~~~v~~~~~~~~~e~  182 (236)
                             .|.    ...+..|.+++.+|..+|+++.+|......++
T Consensus       170 ~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R  215 (571)
T KOG4441|consen  170 SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEER  215 (571)
T ss_pred             hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhH
Confidence                   000    00178999999999999999999998765443

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG3473|consensus Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG1724|consensus Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3840|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
2nn2_A133 Crystal Structure Of The Btb Domain From The LrfZBT 4e-11
2if5_A120 Structure Of The Poz Domain Of Human Lrf, A Master 7e-11
2q81_A119 Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length 3e-09
3m52_A117 Crystal Structure Of The Btb Domain From The Miz-1Z 3e-09
2z8h_A138 Structure Of Mouse Bach1 Btb Domain Length = 138 1e-08
2ihc_A124 Crystal Structure Of The Bric-A-Brac (Btb) Domain O 6e-08
3ga1_A129 Crystal Structure Of The Human Nac1 Poz Domain Leng 1e-07
3m8v_A124 Crystal Structure Of The Btb Domain From KaisoZBTB3 2e-07
3e4u_A130 Crystal Structure Of The Wild-Type Human Bcl6 BtbPO 2e-07
3fkc_A116 Crystal Structure Of Human Zinc Finger And Btb Doma 2e-07
1r28_A127 Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B 9e-07
3ohu_A125 Crystal Structure Of The Human Bach2 Poz Domain, Fo 4e-05
2yy9_A135 Crystal Structure Of Btb Domain From Mouse Hkr3 Len 6e-04
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 8   LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPC-- 65
           + + +++S+I++ L+  RT G L DV IL +GR+   H+ +L+ACS YF+ +F       
Sbjct: 13  IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD 72
Query: 66  QHPVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLA 115
           Q  V  +  ++ E + A++ F Y  T+ +S + +   L  A  L+I  ++
Sbjct: 73  QQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVS 122
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120 Back     alignment and structure
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119 Back     alignment and structure
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117 Back     alignment and structure
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138 Back     alignment and structure
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human Bach1 Length = 124 Back     alignment and structure
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129 Back     alignment and structure
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM II Length = 124 Back     alignment and structure
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ DOMAIN Length = 130 Back     alignment and structure
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain Containing 33 Length = 116 Back     alignment and structure
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 Back     alignment and structure
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I Length = 125 Back     alignment and structure
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3 Length = 135 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 2e-26
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 7e-26
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 1e-25
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-25
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-25
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-25
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 3e-25
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 8e-25
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-24
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 2e-24
3b84_A119 Zinc finger and BTB domain-containing protein 48; 3e-24
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 3e-23
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 8e-23
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 3e-22
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 4e-22
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 8e-21
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 8e-20
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 5e-19
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 7e-18
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-16
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
 Score = 98.5 bits (246), Expect = 2e-26
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 11  NNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVV 70
           + ++  ++ EL+  R  G   D T+   G    AH  +L+ CS +F+ I+ +       V
Sbjct: 6   SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDG--TGGSV 63

Query: 71  ILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGA------SNMMGDN 124
           +L     E    +L F Y G + ++    D  L  A+ L++               +G  
Sbjct: 64  VLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQA 123

Query: 125 ESQIQN 130
           +S +  
Sbjct: 124 QSGLGQ 129
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.96
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.96
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.96
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.96
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.96
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.96
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.96
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.96
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.96
2vpk_A116 Myoneurin; transcription regulation, transcription 99.95
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.95
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.95
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.95
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.93
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.93
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.93
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.93
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.9
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.54
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.37
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.28
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.09
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.65
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.64
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.63
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.61
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.19
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.69
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 96.82
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.66
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 96.35
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 96.18
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.9
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 94.94
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 86.25
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
Probab=99.96  E-value=2.5e-29  Score=196.55  Aligned_cols=127  Identities=23%  Similarity=0.403  Sum_probs=119.1

Q ss_pred             cceeeecCcchHHHHHHHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeC-CCCHHHHHH
Q psy9147           4 ELFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILK-DINYEDIEA   82 (236)
Q Consensus         4 ~~~~~~~~~h~~~ll~~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~-~v~~~~f~~   82 (236)
                      +.+.++++.|...+++.|+++|.++.+|||+|.|+|+.|+|||+|||++|+||++||.........|.++ ++++.+|+.
T Consensus        10 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~   89 (138)
T 2z8h_A           10 AVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEP   89 (138)
T ss_dssp             CCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHH
T ss_pred             CeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHH
Confidence            5688999999999999999999999999999999999999999999999999999998766556789995 899999999


Q ss_pred             HHHHHhCCccccCHHHHHHHHHHHHHhCChhHHHHHHHHhhcccCCcc
Q psy9147          83 VLCFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDNESQIQN  130 (236)
Q Consensus        83 ~L~ylYtg~i~i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~~~~~~~  130 (236)
                      +|+|+|||++.++.+++.+|+.+|++|+++.|++.|++++.......|
T Consensus        90 lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn  137 (138)
T 2z8h_A           90 LIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDST  137 (138)
T ss_dssp             HHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred             HHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999999999999999988876554
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 236
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 9e-26
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 7e-22
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 9e-26
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 8   LKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQH 67
           +++  + S+++  L+ LR+   L DV I+    +  AHK +L ACS  F +IF +   ++
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 68  --PVVILKDINYEDIEAVLCFVYQGTVYISKSRMDSFLKTAESLQIKGL 114
              + +  +IN E    +L F+Y   + + +  + + + TA  LQ++ +
Sbjct: 63  LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHV 111
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.96
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.96
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.09
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.07
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.32
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.24
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.88
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 95.51
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 95.19
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 90.16
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 87.65
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.7e-30  Score=193.41  Aligned_cols=117  Identities=23%  Similarity=0.394  Sum_probs=111.2

Q ss_pred             ceeeecCcchHHHHHHHHHHHhCCCCcceEEEeCCEEEEeeHHHHhhcCHHHHHhhcCCCCCCCeEEeCCCCHHHHHHHH
Q psy9147           5 LFCLKWNNYTSNIITELDSLRTDGDLVDVTILCDGRKITAHKVILSACSSYFRTIFRENPCQHPVVILKDINYEDIEAVL   84 (236)
Q Consensus         5 ~~~~~~~~h~~~ll~~l~~~~~~~~~sDv~i~v~~~~f~aHk~ILaa~S~yF~~~f~~~~~~~~~i~l~~v~~~~f~~~L   84 (236)
                      .+.+++++|+..+++.|+++|.++.+|||+|.|+|++|+|||+|||++|+||++||...   ..++.++++++.+|+.+|
T Consensus         3 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~---~~~i~~~~v~~~~f~~ll   79 (121)
T d1buoa_           3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---SQHYTLDFLSPKTFQQIL   79 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHHHH
T ss_pred             eEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc---cceeecCCCCHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999653   458999999999999999


Q ss_pred             HHHhCCccccCHHHHHHHHHHHHHhCChhHHHHHHHHhhc
Q psy9147          85 CFVYQGTVYISKSRMDSFLKTAESLQIKGLAGASNMMGDN  124 (236)
Q Consensus        85 ~ylYtg~i~i~~~~v~~ll~~A~~l~i~~L~~~c~~~l~~  124 (236)
                      +|+|||++.++.+++.+++.+|++|+++.|++.|.+|+.+
T Consensus        80 ~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          80 EYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999864
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure