Psyllid ID: psy9160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MSTPAASAPELSSLFDKNRSLAYIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYMQNNVA
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHccHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mstpaasapelsslFDKNRSLAYIMLLFqvppnhgphhgqsgyhhqeedtgnsnpELAKYLDRSyweqkkvppnhgshhgqsgyhhqeedtgnsnpeLAKYLDRSYWeqkkygthgshystdhhmnhtsgvtspdeasdtELDDFIRALKSQVEIFVNRMKsnssrgrsiandssVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYMQNNVA
Flexible Loop (DISEMBL)
mstpaasapelsSLFDKNRSLAYIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNrmksnssrgrsiandssVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYMQNNVA
Low Complexity Region (SEG)
MSTPAASAPELSSLFDKNRSLAYIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKVPPNhgshhgqsgyhhqEEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIqeqeyemqrrqeqqkqyymqNNVA
Disordered region (IsUnstruct)
*****************NRSLAYIMLLFQV**********************************************************************YLDRSYWE************************************FIRALKSQVEIFV******************VQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQV*************************************************Y*********************************
Disordered Region (DISOPRED)
*********************AYIMLLFQ*****************************KYL************************************************************************************IRALKSQVEIF******************SVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLT**KDA**ALN***************************************************************************
Disordered Region (DISEMBL)
**********LSSLFDKNRSLAYIMLLFQVPPNHG*****************SNPELAKYLDRSYWEQKK***********************SNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMN************DTELDDFIRALKSQVEIFVNRM**********ANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYMQNNVA
Disordered Region (DISPRO)
************SLFDKNRSLAYIMLLFQVPPNH*************EDTGNSNPELAKYLDRSYWEQKK***********************SNPELAKYLDRSYWEQKKY**************************DTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQ****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTPAASAPELSSLFDKNRSLAYIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYMQNNVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q960X8	760	Hepatocyte growth factor-	no	N/A	0.703	0.275	0.593	5e-65
Q99LI8	775	Hepatocyte growth factor-	yes	N/A	0.656	0.251	0.486	3e-53
Q0V8S0	777	Hepatocyte growth factor-	yes	N/A	0.656	0.250	0.482	5e-52
O14964	777	Hepatocyte growth factor-	yes	N/A	0.656	0.250	0.478	7e-52
Q9JJ50	776	Hepatocyte growth factor-	yes	N/A	0.656	0.251	0.471	4e-51

>sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Drosophila melanogaster GN=Hrs PE=1 SV=1

 Score =  248 bits (632), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 133/224 (59%), Positives = 163/224 (72%), Gaps = 15/224 (6%)

Query: 84  YHHQEEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSG----------VTS 133
           YH Q E+   +NPELAKYL+RSYWEQ+K     S  S                    V S
Sbjct: 312 YHQQPEEA--TNPELAKYLNRSYWEQRKISESSSMASPSAPSPMPPTPQPQQIMPLQVKS 369

Query: 134 PDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKY 193
            DE    ++D+F   +++QVEIFVNRMKSNSSRGRSI+NDSSVQTLF+ +T++HS+ L Y
Sbjct: 370 ADE---VQIDEFAANMRTQVEIFVNRMKSNSSRGRSISNDSSVQTLFMTLTSLHSQQLSY 426

Query: 194 IQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDL 253
           I++ DDKR++YE LQDKLTQ+KD+RAAL+ LR+EH EKLRR A+  ERQ+Q+QMA KLD+
Sbjct: 427 IKEMDDKRMWYEQLQDKLTQIKDSRAALDQLRQEHVEKLRRIAEEQERQRQMQMAQKLDI 486

Query: 254 MRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYMQNNVA 297
           MRKKKQEYLQYQR LALQ+IQEQE EMQ RQEQQK  Y+    A
Sbjct: 487 MRKKKQEYLQYQRQLALQRIQEQEREMQLRQEQQKAQYLMGQSA 530

Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded.
Drosophila melanogaster (taxid: 7227)

>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/228 (48%), Positives = 149/228 (65%), Gaps = 33/228 (14%)

Query: 95  NPELAKYLDRSYWEQKKYGTHGSHYS------TDHHMNHTSGVTSPDEASDTELDD---- 144
           +PELA+YL+R+YWE+K+     S         T+       G T+P+  ++  L +    
Sbjct: 323 DPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPAAQPGEGHTAPNSMAEAPLPETDSQ 382

Query: 145 -----------------------FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFV 181
                                  F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF 
Sbjct: 383 PITPCSGPFSEYQNGESEESHEQFLKALQNAVSTFVNRMKSNHMRGRSITNDSAVLSLFQ 442

Query: 182 NITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAER 241
           +I TMH +LL+ + Q D++R+YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+ AER
Sbjct: 443 SINTMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAER 502

Query: 242 QKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
           Q+QIQ+A KL++MR+KKQEYL+ QR LA+Q++QEQE E Q R EQQKQ
Sbjct: 503 QRQIQLAQKLEIMRQKKQEYLEVQRQLAIQRLQEQEKERQMRLEQQKQ 550

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM, it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Mus musculus (taxid: 10090)

>sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 148/228 (64%), Gaps = 33/228 (14%)

Query: 95  NPELAKYLDRSYWEQKK-----------------------------YGTHGSHYSTDHHM 125
           +PELA+YL+R+YWE+K+                                  S   TD   
Sbjct: 323 DPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPTAQPGEGHAIPANVETSLPETDPQA 382

Query: 126 NHTSGVTSPDEASDTELDD----FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFV 181
              +G    ++  + E ++    F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF 
Sbjct: 383 VTAAGAAFSEQYQNGESEESHAQFLKALQNAVTTFVNRMKSNHVRGRSITNDSAVLSLFQ 442

Query: 182 NITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAER 241
           +I TMH +LL+ + Q D++R+YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+ AER
Sbjct: 443 SINTMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAER 502

Query: 242 QKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
           Q+QIQ+A KL++MR+KKQEYL+ QR LA+Q++QEQE E Q R EQQKQ
Sbjct: 503 QRQIQLAQKLEIMRQKKQEYLEVQRQLAIQRLQEQEKERQMRLEQQKQ 550

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Bos taurus (taxid: 9913)

>sp|O14964|HGS_HUMAN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1

 Score =  204 bits (518), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 150/230 (65%), Gaps = 35/230 (15%)

Query: 95  NPELAKYLDRSYWEQKKYGTHGSHYST-------------DHHMNHTSGVTSPDEASDTE 141
           +PELA+YL+R+YWE+K+     S   +             + H   T+ V +P   +D++
Sbjct: 323 DPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPAAQPGEGHAAPTNVVENPLPETDSQ 382

Query: 142 L----------------------DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTL 179
                                  + F++AL++ V  FVNRMKSN  RGRSI NDS+V +L
Sbjct: 383 PIPPSGGPFSEPQFHNGESEESHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSL 442

Query: 180 FVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIA 239
           F +I  MH +LL+ + Q D++R+YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+ A
Sbjct: 443 FQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEA 502

Query: 240 ERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
           ERQ+QIQ+A KL++MR+KKQEYL+ QR LA+Q++QEQE E Q R EQQKQ
Sbjct: 503 ERQRQIQLAQKLEIMRQKKQEYLEVQRQLAIQRLQEQEKERQMRLEQQKQ 552

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM, it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Homo sapiens (taxid: 9606)

>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 149/229 (65%), Gaps = 34/229 (14%)

Query: 95  NPELAKYLDRSYWEQKKYGTHGSHYST-------------DHHMNHTSGVTSPDEASDTE 141
           +PELA+YL+R+YWE+K+     S   +             + H    S V +P   +D++
Sbjct: 323 DPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPAAQPGEGHTAPNSMVEAPLPETDSQ 382

Query: 142 L---------------------DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLF 180
                                 + F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF
Sbjct: 383 PITSCSGPFSEQYQNGESEESHEQFLKALQNAVSTFVNRMKSNHMRGRSITNDSAVLSLF 442

Query: 181 VNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAE 240
            +I + H +LL+ + + D++R+YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+ AE
Sbjct: 443 QSINSTHPQLLELLNRLDERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAE 502

Query: 241 RQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
           RQ+QIQ+A KL++MR+KKQEYL+ QR LA+Q++QEQE E Q R EQQKQ
Sbjct: 503 RQRQIQLAQKLEIMRQKKQEYLEVQRQLAIQRLQEQEKERQMRLEQQKQ 551


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.126    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,517,180
Number of Sequences: 539616
Number of extensions: 4766402
Number of successful extensions: 36478
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 746
Number of HSP's that attempted gapping in prelim test: 23013
Number of HSP's gapped (non-prelim): 7237
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM, it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation (By similarity). May contribute to the efficient recruitment of SMADs to the activin receptor complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
332029107	835	Hepatocyte growth factor-regulated tyros	0.686	0.244	0.652	5e-67
91093473	628	PREDICTED: similar to hepatocyte growth	0.670	0.316	0.655	8e-67
270012668	627	hypothetical protein TcasGA2_TC015976 [T	0.670	0.317	0.645	8e-67
242017771	807	Hepatocyte growth factor-regulated tyros	0.673	0.247	0.622	1e-66
307201531	833	Hepatocyte growth factor-regulated tyros	0.680	0.242	0.657	2e-66
383865655	825	PREDICTED: hepatocyte growth factor-regu	0.649	0.233	0.673	4e-66
322796370	830	hypothetical protein SINV_09655 [Solenop	0.686	0.245	0.648	5e-66
383865653	831	PREDICTED: hepatocyte growth factor-regu	0.649	0.232	0.673	6e-66
307169356	827	Hepatocyte growth factor-regulated tyros	0.686	0.246	0.641	8e-66
380021056	827	PREDICTED: LOW QUALITY PROTEIN: hepatocy	0.666	0.239	0.650	1e-64

>gi|332029107|gb|EGI69120.1| Hepatocyte growth factor-regulated tyrosine kinase substrate [Acromyrmex echinatior]

 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/219 (65%), Positives = 168/219 (76%), Gaps = 15/219 (6%)

Query: 87  QEEDTGNSNPELAKYLDRSYWEQKKYGT--HGSHYSTDHHMNHTSGVTSP---------- 134
           Q +D     PELAKYL+R YWEQ++     HGS    D        ++SP          
Sbjct: 327 QVQDDDEIEPELAKYLNRKYWEQRQTANEDHGSR--VDVTSPSAPNISSPMPQKLILIKQ 384

Query: 135 -DEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKY 193
            +   DT++++F+R L+SQVEIFVNRMKSNSSRGRSIANDSSVQTLF+NIT MHSRLL+Y
Sbjct: 385 ENGEIDTQMEEFVRGLRSQVEIFVNRMKSNSSRGRSIANDSSVQTLFMNITAMHSRLLRY 444

Query: 194 IQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDL 253
           IQ++DD RVYYEGLQDKLTQ+KDARAAL+ALREEH EKLRR A+ AERQ+Q+ MA KL +
Sbjct: 445 IQEQDDSRVYYEGLQDKLTQMKDARAALDALREEHKEKLRRRAEEAERQRQMLMAQKLAI 504

Query: 254 MRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           MRKKKQEYLQYQR LAL+KIQEQE EMQ RQEQQKQ Y+
Sbjct: 505 MRKKKQEYLQYQRQLALRKIQEQEREMQMRQEQQKQQYI 543

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093473|ref|XP_967857.1| PREDICTED: similar to hepatocyte growth factor-regulated tyrosine kinase substrate (hgs) [Tribolium castaneum]

 Score =  259 bits (663), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 137/209 (65%), Positives = 164/209 (78%), Gaps = 10/209 (4%)

Query: 94  SNPELAKYLDRSYWE---QKKYGTHGSHYSTDHHMNHTSG---VTSP----DEASDTELD 143
           +NPELA+YL+RSYWE   Q +        S     + T+    +T P    +   D +++
Sbjct: 305 ANPELARYLNRSYWESLNQNEAAPEARAASPSAPASATAPATEITKPKHKENGVVDNDIE 364

Query: 144 DFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVY 203
           +FI  LKSQVEIF+NRMKSNSSRGRSIAND+SVQT+F+NIT MHS+LL+YIQQ DD R++
Sbjct: 365 EFISTLKSQVEIFINRMKSNSSRGRSIANDTSVQTIFMNITAMHSKLLRYIQQHDDSRLH 424

Query: 204 YEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQ 263
           YE LQDKLTQVKDARAAL+ LREEH EKLRREA+ AERQ+Q+QMAHKL++MRKKKQEYLQ
Sbjct: 425 YERLQDKLTQVKDARAALDDLREEHREKLRREAEEAERQRQLQMAHKLEIMRKKKQEYLQ 484

Query: 264 YQRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           YQR LALQ+IQEQE EMQ RQE QKQ YM
Sbjct: 485 YQRQLALQRIQEQEREMQMRQEHQKQRYM 513

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012668|gb|EFA09116.1| hypothetical protein TcasGA2_TC015976 [Tribolium castaneum]

 Score =  259 bits (663), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 161/209 (77%), Gaps = 10/209 (4%)

Query: 94  SNPELAKYLDRSYWEQ------KKYGTHGSHYSTDHHMNHTSGVTSP----DEASDTELD 143
           +NPELA+YL+RSYWE              S  +        + +T P    +   D +++
Sbjct: 304 ANPELARYLNRSYWESLNQNEAAPEARAASPSAPASATAPATEITKPKHKENGVVDNDIE 363

Query: 144 DFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVY 203
           +FI  LKSQVEIF+NRMKSNSSRGRSIAND+SVQT+F+NIT MHS+LL+YIQQ DD R++
Sbjct: 364 EFISTLKSQVEIFINRMKSNSSRGRSIANDTSVQTIFMNITAMHSKLLRYIQQHDDSRLH 423

Query: 204 YEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQ 263
           YE LQDKLTQVKDARAAL+ LREEH EKLRREA+ AERQ+Q+QMAHKL++MRKKKQEYLQ
Sbjct: 424 YERLQDKLTQVKDARAALDDLREEHREKLRREAEEAERQRQLQMAHKLEIMRKKKQEYLQ 483

Query: 264 YQRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           YQR LALQ+IQEQE EMQ RQE QKQ YM
Sbjct: 484 YQRQLALQRIQEQEREMQMRQEHQKQRYM 512

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017771|ref|XP_002429360.1| Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Pediculus humanus corporis] gi|212514269|gb|EEB16622.1| Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Pediculus humanus corporis]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 165/212 (77%), Gaps = 12/212 (5%)

Query: 98  LAKYLDRSYWEQKKYGTHGSHY-STDHHMNHTSG-----VTSP------DEASDTELDDF 145
           LA+YL+RSYWE+++         S+  H+  + G      T+P       E  ++ELDDF
Sbjct: 311 LARYLNRSYWEKRQAEEKAVKKESSPIHIRSSPGGPPSAPTTPTHQLENGEIIESELDDF 370

Query: 146 IRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYE 205
           +  LKSQVEIFVNRMKSNSSRGRSI+NDSSVQTLF+N+T  HS LL+YI+Q+DD RVYYE
Sbjct: 371 VSYLKSQVEIFVNRMKSNSSRGRSISNDSSVQTLFMNVTMNHSTLLRYIRQQDDSRVYYE 430

Query: 206 GLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQ 265
           GLQDKL QVKDA  AL+ALR+EH EKLRREA+ AERQKQ+QMA KL++MR++KQEYLQYQ
Sbjct: 431 GLQDKLAQVKDAMMALDALRDEHREKLRREAEEAERQKQMQMAQKLEIMRRRKQEYLQYQ 490

Query: 266 RNLALQKIQEQEYEMQRRQEQQKQYYMQNNVA 297
           R LA+QK+QEQE E+Q RQEQQKQ+Y+  ++ 
Sbjct: 491 RQLAIQKMQEQERELQMRQEQQKQHYLMGSLG 522

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201531|gb|EFN81294.1| Hepatocyte growth factor-regulated tyrosine kinase substrate [Harpegnathos saltator]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/219 (65%), Positives = 168/219 (76%), Gaps = 17/219 (7%)

Query: 87  QEEDTGNSNPELAKYLDRSYWEQKKYGT--HGSHYSTDHHMNHTSGVTSP---------- 134
           QEED    +PELAKYL+R YWEQ++     HGS    D        ++SP          
Sbjct: 312 QEED--EIDPELAKYLNRKYWEQRQTVIEEHGSR--ADVTSPSAPNISSPMPQKVVLMKQ 367

Query: 135 -DEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKY 193
            +   D ++++F+  L+SQVEIFVNRMKSNSSRGRSIANDSSVQTLF+NIT MHSRLL+Y
Sbjct: 368 ENGEVDNQMEEFVSGLRSQVEIFVNRMKSNSSRGRSIANDSSVQTLFMNITAMHSRLLRY 427

Query: 194 IQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDL 253
           IQ++DD RVYYEGLQDKLTQ+KDARAAL+ALREEH EKLRR A+ AERQ+Q+ MA KL +
Sbjct: 428 IQEQDDSRVYYEGLQDKLTQMKDARAALDALREEHKEKLRRRAEEAERQRQMLMAQKLAI 487

Query: 254 MRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           MRKKKQEYLQYQR LALQKIQEQE EMQ RQEQQKQ Y+
Sbjct: 488 MRKKKQEYLQYQRQLALQKIQEQEREMQMRQEQQKQQYI 526

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865655|ref|XP_003708288.1| PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform 2 [Megachile rotundata]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 163/208 (78%), Gaps = 15/208 (7%)

Query: 98  LAKYLDRSYWEQKKYGT--HGSHYSTDHHMNHTSGVTSP-----------DEASDTELDD 144
           LAKYL+R YWEQ++     HGS    D        ++SP           +   D ++++
Sbjct: 316 LAKYLNRKYWEQRQTAIEEHGSR--ADVTSPSAPNISSPMPQKVVIAKQQNGEVDNQMEE 373

Query: 145 FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYY 204
           F+ AL+SQVEIFVNRMKSNSSRGRSIANDSSVQTLF+NIT MHSRLL+YIQ++DD RVYY
Sbjct: 374 FVNALRSQVEIFVNRMKSNSSRGRSIANDSSVQTLFLNITAMHSRLLRYIQEQDDSRVYY 433

Query: 205 EGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQY 264
           EGLQDKLTQ+KDARAAL+ALREEH EKLRR+A+ AERQ+Q+ MA KL +MRKKKQEYLQY
Sbjct: 434 EGLQDKLTQMKDARAALDALREEHREKLRRQAEEAERQRQMLMAQKLAIMRKKKQEYLQY 493

Query: 265 QRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           QR LALQKIQEQE EMQ RQEQQKQ YM
Sbjct: 494 QRQLALQKIQEQEREMQMRQEQQKQQYM 521

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796370|gb|EFZ18911.1| hypothetical protein SINV_09655 [Solenopsis invicta]

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 142/219 (64%), Positives = 167/219 (76%), Gaps = 15/219 (6%)

Query: 87  QEEDTGNSNPELAKYLDRSYWEQKKYGT--HGSHYSTDHHMNHTSGVTSP---------- 134
           Q +D     PELAKYL+R YWEQ++     HGS    D        ++SP          
Sbjct: 311 QVQDDDEIEPELAKYLNRKYWEQRQTVNEEHGSR--VDVTSPSAPNISSPMPQKLVLVKQ 368

Query: 135 -DEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKY 193
            +   DT++++F+  L+SQVEIFVNRMKSNSSRGRSIANDSSVQTLF+NIT MHSRLL+Y
Sbjct: 369 ENGEIDTQMEEFVSGLRSQVEIFVNRMKSNSSRGRSIANDSSVQTLFMNITAMHSRLLRY 428

Query: 194 IQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDL 253
           IQ++DD RVYYEGLQDKLTQ+KDARAAL+ALREEH EKLRR A+ AERQ+Q+ MA KL +
Sbjct: 429 IQEQDDSRVYYEGLQDKLTQMKDARAALDALREEHKEKLRRRAEEAERQRQMLMAQKLAI 488

Query: 254 MRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           MRKKKQEYLQYQR LAL+KIQEQE EMQ RQEQQKQ Y+
Sbjct: 489 MRKKKQEYLQYQRQLALRKIQEQEREMQMRQEQQKQQYI 527

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865653|ref|XP_003708287.1| PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform 1 [Megachile rotundata]

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 163/208 (78%), Gaps = 15/208 (7%)

Query: 98  LAKYLDRSYWEQKKYGT--HGSHYSTDHHMNHTSGVTSP-----------DEASDTELDD 144
           LAKYL+R YWEQ++     HGS    D        ++SP           +   D ++++
Sbjct: 322 LAKYLNRKYWEQRQTAIEEHGSR--ADVTSPSAPNISSPMPQKVVIAKQQNGEVDNQMEE 379

Query: 145 FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYY 204
           F+ AL+SQVEIFVNRMKSNSSRGRSIANDSSVQTLF+NIT MHSRLL+YIQ++DD RVYY
Sbjct: 380 FVNALRSQVEIFVNRMKSNSSRGRSIANDSSVQTLFLNITAMHSRLLRYIQEQDDSRVYY 439

Query: 205 EGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQY 264
           EGLQDKLTQ+KDARAAL+ALREEH EKLRR+A+ AERQ+Q+ MA KL +MRKKKQEYLQY
Sbjct: 440 EGLQDKLTQMKDARAALDALREEHREKLRRQAEEAERQRQMLMAQKLAIMRKKKQEYLQY 499

Query: 265 QRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           QR LALQKIQEQE EMQ RQEQQKQ YM
Sbjct: 500 QRQLALQKIQEQEREMQMRQEQQKQQYM 527

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169356|gb|EFN62077.1| Hepatocyte growth factor-regulated tyrosine kinase substrate [Camponotus floridanus]

 Score =  256 bits (654), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 138/215 (64%), Positives = 164/215 (76%), Gaps = 11/215 (5%)

Query: 89  EDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSP-----------DEA 137
           +D     PELAKYL+R YWEQ++  +       D        ++SP           +  
Sbjct: 313 QDDDEIEPELAKYLNRKYWEQRQIVSEEHTSRVDVTSPSAPNISSPMPQRVVLVKQENGE 372

Query: 138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQK 197
            DT++++F+  L+SQVEIFVNRMKSNSSRGRSIANDSSVQTLF+NIT MHSRLL+YIQ++
Sbjct: 373 IDTQMEEFVSGLRSQVEIFVNRMKSNSSRGRSIANDSSVQTLFMNITAMHSRLLRYIQEQ 432

Query: 198 DDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK 257
           DD RVYYEGLQDKLTQ+KDARAAL+ALREEH EKLRR A+ AERQ+Q+ MA KL +MRKK
Sbjct: 433 DDNRVYYEGLQDKLTQMKDARAALDALREEHKEKLRRRAEEAERQRQMLMAQKLAIMRKK 492

Query: 258 KQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           KQEYLQYQR LAL+KIQEQE EMQ RQEQQKQ Y+
Sbjct: 493 KQEYLQYQRQLALRKIQEQEREMQMRQEQQKQQYI 527

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021056|ref|XP_003694390.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte growth factor-regulated tyrosine kinase substrate-like [Apis florea]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/209 (65%), Positives = 161/209 (77%), Gaps = 11/209 (5%)

Query: 95  NPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSP-----------DEASDTELD 143
           +PELAKYL+R  WE ++          D        ++SP           +   D +++
Sbjct: 313 DPELAKYLNRKRWELRQSALEEHSSRADVTSPSAPNISSPMPQKVIITKQQNGEVDNQME 372

Query: 144 DFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVY 203
           +F+ AL+SQVEIFVNRMKSNSSRGRSIANDSSVQTLF+NIT MHSRLL+YIQ++DD RVY
Sbjct: 373 EFVNALRSQVEIFVNRMKSNSSRGRSIANDSSVQTLFLNITAMHSRLLRYIQEQDDSRVY 432

Query: 204 YEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQ 263
           YEGLQDKLTQ+KDARAAL+ALREEH EKLRR+A+ AERQ+Q+ MA KL +MRKKKQEYLQ
Sbjct: 433 YEGLQDKLTQMKDARAALDALREEHREKLRRQAEEAERQRQMLMAQKLAIMRKKKQEYLQ 492

Query: 264 YQRNLALQKIQEQEYEMQRRQEQQKQYYM 292
           YQR LALQKIQEQE EMQ RQEQQKQ Y+
Sbjct: 493 YQRQLALQKIQEQEREMQMRQEQQKQQYI 521

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
FB|FBgn0031450	760	Hrs "Hepatocyte growth factor	0.750	0.293	0.506	3.8e-53
ZFIN|ZDB-GENE-030131-6107	773	hgs "hepatocyte growth factor-	0.457	0.175	0.625	8.9e-46
MGI|MGI:104681	775	Hgs "HGF-regulated tyrosine ki	0.457	0.175	0.610	3.3e-45
UNIPROTKB|Q0V8S0	777	HGS "Hepatocyte growth factor-	0.434	0.166	0.635	1.6e-44
UNIPROTKB|E1C396	705	HGS "Uncharacterized protein"	0.457	0.192	0.595	1.8e-44
UNIPROTKB|O14964	777	HGS "Hepatocyte growth factor-	0.457	0.175	0.602	2.6e-44
UNIPROTKB|E2QWE3	782	HGS "Uncharacterized protein"	0.434	0.164	0.627	4.5e-44
RGD|69225	776	Hgs "hepatocyte growth factor-	0.457	0.175	0.588	1.2e-43
WB|WBGene00004101	729	hgrs-1 [Caenorhabditis elegans	0.481	0.196	0.401	1.7e-28

FB|FBgn0031450 Hrs "Hepatocyte growth factor regulated tyrosine kinase substrate" [Drosophila melanogaster (taxid:7227)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 119/235 (50%), Positives = 158/235 (67%)

Query:    47 EEDTGNSNPELAKYLDRSYWEQKKVPPNXXXXXXXXXXXXXEEDTGNSNPELAKYLDRSY 106
             + +     P+L      +Y  Q++ P               EE T   NPELAKYL+RSY
Sbjct:   276 QSEAEQQKPKLQSLPPAAYRMQQRSPSPEAPPEPKEYHQQPEEAT---NPELAKYLNRSY 332

Query:   107 WEQKKYGTHGSHYSTDHHMNHTSGVTSPDE--------ASDTELDDFIRALKSQVEIFVN 158
             WEQ+K  +  S  ++    +       P +        A + ++D+F   +++QVEIFVN
Sbjct:   333 WEQRKI-SESSSMASPSAPSPMPPTPQPQQIMPLQVKSADEVQIDEFAANMRTQVEIFVN 391

Query:   159 RMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDAR 218
             RMKSNSSRGRSI+NDSSVQTLF+ +T++HS+ L YI++ DDKR++YE LQDKLTQ+KD+R
Sbjct:   392 RMKSNSSRGRSISNDSSVQTLFMTLTSLHSQQLSYIKEMDDKRMWYEQLQDKLTQIKDSR 451

Query:   219 AALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKI 273
             AAL+ LR+EH EKLRR A+  ERQ+Q+QMA KLD+MRKKKQEYLQYQR LALQ+I
Sbjct:   452 AALDQLRQEHVEKLRRIAEEQERQRQMQMAQKLDIMRKKKQEYLQYQRQLALQRI 506

GO:0005737 "cytoplasm" evidence=NAS

GO:0008333 "endosome to lysosome transport" evidence=TAS

GO:0005769 "early endosome" evidence=NAS

GO:0005770 "late endosome" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0006887 "exocytosis" evidence=TAS

GO:0008293 "torso signaling pathway" evidence=NAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0005768 "endosome" evidence=TAS

GO:0006897 "endocytosis" evidence=IMP;NAS

GO:0016050 "vesicle organization" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0033565 "ESCRT-0 complex" evidence=IDA

GO:0045752 "positive regulation of Toll signaling pathway" evidence=IMP

ZFIN|ZDB-GENE-030131-6107 hgs "hepatocyte growth factor-regulated tyrosine kinase substrate" [Danio rerio (taxid:7955)]

 Score = 440 (159.9 bits), Expect = 8.9e-46, Sum P(2) = 8.9e-46
 Identities = 85/136 (62%), Positives = 111/136 (81%)

Query:   138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQK 197
             S+   + F++AL++ V  F+NRMKSN  RGRSI NDS+V +LF +I  MH +LL+ + Q 
Sbjct:   404 SEENHEQFLKALQNSVTTFLNRMKSNHMRGRSITNDSAVLSLFQSINNMHPQLLEILNQL 463

Query:   198 DDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK 257
             D+KR+YYEGLQDKL QV+DARAALNALREEH EKLRR A+ AERQ+QIQ+A KL++MR+K
Sbjct:   464 DEKRLYYEGLQDKLAQVRDARAALNALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQK 523

Query:   258 KQEYLQYQRNLALQKI 273
             KQEYL+ QR LA+Q++
Sbjct:   524 KQEYLEMQRQLAIQRL 539

GO:0046872 "metal ion binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

MGI|MGI:104681 Hgs "HGF-regulated tyrosine kinase substrate" [Mus musculus (taxid:10090)]

 Score = 435 (158.2 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 83/136 (61%), Positives = 111/136 (81%)

Query:   138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQK 197
             S+   + F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I TMH +LL+ + Q 
Sbjct:   399 SEESHEQFLKALQNAVSTFVNRMKSNHMRGRSITNDSAVLSLFQSINTMHPQLLELLNQL 458

Query:   198 DDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK 257
             D++R+YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+ AERQ+QIQ+A KL++MR+K
Sbjct:   459 DERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQK 518

Query:   258 KQEYLQYQRNLALQKI 273
             KQEYL+ QR LA+Q++
Sbjct:   519 KQEYLEVQRQLAIQRL 534

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030141 "secretory granule" evidence=ISO

GO:0046426 "negative regulation of JAK-STAT cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q0V8S0 HGS "Hepatocyte growth factor-regulated tyrosine kinase substrate" [Bos taurus (taxid:9913)]

 Score = 429 (156.1 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
 Identities = 82/129 (63%), Positives = 108/129 (83%)

Query:   145 FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYY 204
             F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I TMH +LL+ + Q D++R+YY
Sbjct:   406 FLKALQNAVTTFVNRMKSNHVRGRSITNDSAVLSLFQSINTMHPQLLELLNQLDERRLYY 465

Query:   205 EGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQY 264
             EGLQDKL Q++DAR AL+ALREEH EKLRR A+ AERQ+QIQ+A KL++MR+KKQEYL+ 
Sbjct:   466 EGLQDKLAQIRDARGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQKKQEYLEV 525

Query:   265 QRNLALQKI 273
             QR LA+Q++
Sbjct:   526 QRQLAIQRL 534

GO:0032585 "multivesicular body membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0046426 "negative regulation of JAK-STAT cascade" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1C396 HGS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 425 (154.7 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 81/136 (59%), Positives = 109/136 (80%)

Query:   138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQK 197
             S+   + F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I  MH +LL+ + Q 
Sbjct:   394 SEENHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINNMHPQLLELLNQL 453

Query:   198 DDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK 257
             D++R+YYE LQDKL Q++DAR ALNALREEH EK+RR A+ AERQ+QIQ+A KL++MR+K
Sbjct:   454 DERRMYYESLQDKLAQIRDARGALNALREEHREKVRRAAEEAERQRQIQLAQKLEIMRQK 513

Query:   258 KQEYLQYQRNLALQKI 273
             KQEYL+ QR LA+Q++
Sbjct:   514 KQEYLEMQRQLAIQRL 529

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0046426 "negative regulation of JAK-STAT cascade" evidence=IEA

UNIPROTKB|O14964 HGS "Hepatocyte growth factor-regulated tyrosine kinase substrate" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
 Identities = 82/136 (60%), Positives = 110/136 (80%)

Query:   138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQK 197
             S+   + F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I  MH +LL+ + Q 
Sbjct:   401 SEESHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQL 460

Query:   198 DDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK 257
             D++R+YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+ AERQ+QIQ+A KL++MR+K
Sbjct:   461 DERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQK 520

Query:   258 KQEYLQYQRNLALQKI 273
             KQEYL+ QR LA+Q++
Sbjct:   521 KQEYLEVQRQLAIQRL 536

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0032585 "multivesicular body membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=NAS;TAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007165 "signal transduction" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005769 "early endosome" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0042176 "regulation of protein catabolic process" evidence=TAS

GO:0046426 "negative regulation of JAK-STAT cascade" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2QWE3 HGS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 425 (154.7 bits), Expect = 4.5e-44, Sum P(2) = 4.5e-44
 Identities = 81/129 (62%), Positives = 108/129 (83%)

Query:   145 FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYY 204
             F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I +MH +LL+ + Q D++R+YY
Sbjct:   411 FLKALQNAVTTFVNRMKSNHVRGRSITNDSAVLSLFQSINSMHPQLLELLNQLDERRLYY 470

Query:   205 EGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQY 264
             EGLQDKL Q++DAR AL+ALREEH EKLRR A+ AERQ+QIQ+A KL++MR+KKQEYL+ 
Sbjct:   471 EGLQDKLAQIRDARGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQKKQEYLEV 530

Query:   265 QRNLALQKI 273
             QR LA+Q++
Sbjct:   531 QRQLAIQRL 539

GO:0046426 "negative regulation of JAK-STAT cascade" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|69225 Hgs "hepatocyte growth factor-regulated tyrosine kinase substrate" [Rattus norvegicus (taxid:10116)]

 Score = 421 (153.3 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 80/136 (58%), Positives = 110/136 (80%)

Query:   138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQK 197
             S+   + F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I + H +LL+ + + 
Sbjct:   400 SEESHEQFLKALQNAVSTFVNRMKSNHMRGRSITNDSAVLSLFQSINSTHPQLLELLNRL 459

Query:   198 DDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK 257
             D++R+YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+ AERQ+QIQ+A KL++MR+K
Sbjct:   460 DERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAERQRQIQLAQKLEIMRQK 519

Query:   258 KQEYLQYQRNLALQKI 273
             KQEYL+ QR LA+Q++
Sbjct:   520 KQEYLEVQRQLAIQRL 535

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=ISO;NAS

GO:0030141 "secretory granule" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0032585 "multivesicular body membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046426 "negative regulation of JAK-STAT cascade" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00004101 hgrs-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 277 (102.6 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
 Identities = 61/152 (40%), Positives = 93/152 (61%)

Query:   126 NHTSGVTSPD---EASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVN 182
             N  +G  S D   +A DT    + ++++ QV +  NR++SN +RGR + NDS++Q LF  
Sbjct:   384 NGLNGTVSDDAKLQADDTM--KWCQSIREQVSVMDNRIRSNLARGRPVFNDSAIQDLFTK 441

Query:   183 ITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQ 242
             +T +HS +L  +   D++R YYE LQD L  + +AR A++ +REEH  K  R+ ++AE Q
Sbjct:   442 LTELHSHVLSRMHTLDEQRGYYESLQDHLANIGEARQAIDEMREEHERK--RQERMAEEQ 499

Query:   243 K--QIQMAHKLDLMRKKKQEYLQYQRNLALQK 272
             +  Q QM   L++MR KK   L  QR  ALQ+
Sbjct:   500 RLRQAQMQQTLEMMRMKKHAMLMEQREQALQR 531

GO:0046872 "metal ion binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISS

GO:0033565 "ESCRT-0 complex" evidence=IPI

GO:0043130 "ubiquitin binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	297
pfam12210	96	pfam12210, Hrs_helical, Hepatocyte growth factor-r	2e-37
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	5e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	0.001

>gnl|CDD|152645 pfam12210, Hrs_helical, Hepatocyte growth factor-regulated tyrosine kinase substrate

 Score =  128 bits (322), Expect = 2e-37
 Identities = 65/95 (68%), Positives = 78/95 (82%)

Query: 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRV 202
           ++F+  L++ VEIFVNRMKSNS RGRSIANDS+VQ+LF  I  MH +LL  + Q D+KR 
Sbjct: 1   EEFLNNLRTSVEIFVNRMKSNSMRGRSIANDSAVQSLFQTINAMHPQLLSLMNQLDEKRG 60

Query: 203 YYEGLQDKLTQVKDARAALNALREEHNEKLRREAQ 237
           YYEGLQDKL Q+KDARAAL+ALREEH EKLRR A+
Sbjct: 61  YYEGLQDKLAQIKDARAALDALREEHREKLRRAAE 95

This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with pfam00790, pfam01363, pfam02809. This domain is the helical region of Hrs which forms the core complex of ESCRT with STAM. Length = 96

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 18/89 (20%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 208 QDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQ-----MAHKLDLMRKKKQEYL 262
           ++ L + K+         E   E   R  ++ + +K++      +  KL+L+ K+++E  
Sbjct: 56  KEALLEAKEE--IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELE 113

Query: 263 QYQRNLA--LQKIQEQEYEMQRRQEQQKQ 289
           + ++ L    Q+++++E E++   E+Q Q
Sbjct: 114 KKEKELEQKQQELEKKEEELEELIEEQLQ 142

Length = 520

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 30/156 (19%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 141 ELDDFIRALKSQVEIFVNRMKS--NSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKD 198
           +L++ I   +S +E  +  ++S  ++ +  S      V+ L   +  +   L K +Q+ +
Sbjct: 286 QLEELIDKYESHIEKALEELESILDTEKENSEFKLD-VEELKALLEALEEILEKNLQKLE 344

Query: 199 DKR------VYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLD 252
           +K       +  E + D +  + D   A+N L  EHNEK+     + + + + +    L 
Sbjct: 345 EKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDN---LKKEKNKAKKKLWLH 401

Query: 253 LMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQK 288
           L+ + K++   YQ+     +      E + +Q + +
Sbjct: 402 LVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAE 437

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
PF12210	96	Hrs_helical: Hepatocyte growth factor-regulated ty	100.0
KOG1818|consensus	634		100.0
PF03127	100	GAT: GAT domain; InterPro: IPR004152 The GAT domai	93.43
KOG0163|consensus	1259		90.47
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	82.31
PF11214	105	Med2: Mediator complex subunit 2; InterPro: IPR021	81.3

>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS)

Probab=100.00  E-value=2e-49  Score=319.72  Aligned_cols=96  Identities=72%  Similarity=1.074  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHH
Q psy9160         143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALN  222 (297)
Q Consensus       143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALD  222 (297)
                      ++||++|+++|++|||||+||++|||||+||+||||||++||+|||+||+||+++||+|+|||+|||||++|+|||+|||
T Consensus         1 ~ef~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~eAR~AlD   80 (96)
T PF12210_consen    1 EEFCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKEARAALD   80 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy9160         223 ALREEHNEKLRREAQI  238 (297)
Q Consensus       223 aLReeH~eklr~~aeE  238 (297)
                      +||++|++||++++||
T Consensus        81 alR~eH~~klrr~aEE   96 (96)
T PF12210_consen   81 ALREEHREKLRRQAEE   96 (96)
T ss_dssp             HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999998886

It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.

>KOG1818|consensus

Probab=100.00  E-value=1.2e-44  Score=362.41  Aligned_cols=244  Identities=37%  Similarity=0.467  Sum_probs=205.9

Q ss_pred             CCCCCcccccCCCChHHHHHhchhHHHhcCCCCCCCCCCCCCC--C----CCCccc-CCCCChHHHhhhhhHHHHhhhcC
Q psy9160          41 SGYHHQEEDTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQSG--Y----HHQEED-TGNSNPELAKYLDRSYWEQKKYG  113 (297)
Q Consensus        41 ~~~~~~~e~~Eeeel~LA~aLs~se~e~~~~sps~~~~~~~~~--~----~p~~e~-~s~~DPELARYLNRsYWEqr~~~  113 (297)
                      .+.....++.|++++.||++||++|+++...+++....+.+..  +    ++.... .++++++|||||||.||+.++..
T Consensus       244 k~r~~~~~~keeed~~lAi~lSq~E~~~~~~~~~~y~~~~~~~~v~~q~~~~~~~~s~~~~~q~la~~l~r~~~~~~k~~  323 (634)
T KOG1818|consen  244 KDRAKALEEKEEEDLSLAIALSQSEAEAACSSPSSYRAPQPANDVLSQAIEPAELGSLEEVSQELARYLNRMYWRSKKQS  323 (634)
T ss_pred             ccccccccchhhHHHHHHHHHhHHHHHHhcCCCcccccCCCcccccccccchhccCChhhcchHhHhhHHHHHHhhhhhh
Confidence            3455667888999999999999999999955444333322211  1    111111 24899999999999999988876


Q ss_pred             CCCCCC-CCCCCCCCCCCCC-CCCC-CCchhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHH
Q psy9160         114 THGSHY-STDHHMNHTSGVT-SPDE-ASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRL  190 (297)
Q Consensus       114 e~~s~~-spsap~~~t~~~~-~p~~-~~~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qL  190 (297)
                      .+++.+ ++++|+|....++ .-.+ +.+..++.|..       +|+|||+||..+||+|.||++|++||++|+.+|.++
T Consensus       324 ~srs~~~t~~~p~Ptp~~ip~g~~s~~~k~~~~~fa~-------~~~~~~~S~l~~~~~I~nds~~~tL~q~l~~~~kq~  396 (634)
T KOG1818|consen  324 SSRSMPHTPQAPPPTPTPIPPGFHSGDTKGQSDRFAG-------FFPNEMKSSLIRSRSITNDSKVQTLKQSLTALHKQL  396 (634)
T ss_pred             hcccCCCCCCCCCCCCCCCCccccCcchhhhHHHHhh-------hccccccchhhcccccccccccccHHHHHHHHHhcc
Confidence            566666 6776666311122 1122 34567778877       999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160         191 LKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLAL  270 (297)
Q Consensus       191 L~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQrq~al  270 (297)
                      |. |..++++|.|||+|||++++|+++|.|+|.||++|++++++.+|+++||++|+|+++|++||++|++|+.+||+.+|
T Consensus       397 l~-~~~~d~kr~~~e~Lqe~~~~i~~~~~a~~~lree~~~~~~ri~e~q~rq~~~~~qd~l~~~r~~~~~~~~~q~e~~l  475 (634)
T KOG1818|consen  397 LP-LGSLDNKRQAYEALQEMLAQISRLREALDELREEHRERLGRIAEEQKRQRQMQLQDPLDIMRMKKQEYLELQRESAL  475 (634)
T ss_pred             cc-cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhccCChHHHHHhhhccccccccccHH
Confidence            99 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q psy9160         271 QKIQEQEYEMQRRQEQQKQYYMQ  293 (297)
Q Consensus       271 qriQeqerEmqmr~eqQk~~y~m  293 (297)
                      +++|++++||+||+++|++.| |
T Consensus       476 q~~q~~~~e~~~~~~~q~as~-~  497 (634)
T KOG1818|consen  476 QRNQSQEQELQMRMEQQEASV-M  497 (634)
T ss_pred             HHHHHHHHhHHHHHHHHHHHH-h
Confidence            999999999999999999999 5

>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3

Probab=93.43  E-value=0.51  Score=37.44  Aligned_cols=82  Identities=13%  Similarity=0.264  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHH
Q psy9160         142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAAL  221 (297)
Q Consensus       142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~AL  221 (297)
                      ...=|..+++.|++|.+-+.....-+.+..++..++.||.++-.|+++|+++|....|.- +...|-.==+.|..|=.-.
T Consensus         9 ~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee-~l~~lL~~ND~L~~~l~~Y   87 (100)
T PF03127_consen    9 RRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEE-LLGELLQANDELNQALERY   87 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHHHHHHHH
Confidence            345567888999998887777766555555558999999999999999999999987776 5544443333333343444


Q ss_pred             HHH
Q psy9160         222 NAL  224 (297)
Q Consensus       222 DaL  224 (297)
                      |.|
T Consensus        88 ~~l   90 (100)
T PF03127_consen   88 DRL   90 (100)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.

>KOG0163|consensus

Probab=90.47  E-value=23  Score=39.43  Aligned_cols=124  Identities=19%  Similarity=0.223  Sum_probs=75.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHH
Q psy9160         138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDA  217 (297)
Q Consensus       138 ~~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeA  217 (297)
                      +-+++..=++++-.+|+..|..||+-     -|++ ..+++-|..+-.---.|++.++-   +......=+.+|-.|.|+
T Consensus       862 ~r~e~~~~~~~~~~~id~lv~~IK~~-----~~tq-~~~~~~~d~~~~~~e~~~~~l~s---k~~q~~~e~er~rk~qE~  932 (1259)
T KOG0163|consen  862 GREEIISGANSTYRQIDDLVKKIKMP-----RITQ-REMNSEYDVAVKNYEKLVKRLDS---KEQQQIEELERLRKIQEL  932 (1259)
T ss_pred             chHHHHhhhhhHHHHHHHHHHHhccc-----ccch-HHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Confidence            33445555566666778888888762     2332 34556666655555556665553   222233334555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160         218 RAALNALREEHNEKLRREAQI-AERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQ  271 (297)
Q Consensus       218 R~ALDaLReeH~eklr~~aeE-aeRqrQmQmaqKLeiMRqKKqEyL~yQrq~alq  271 (297)
                      -.+=.+ |.|-.+|.|++++| ...-++|-.--|++-=++++||--+.+.++.++
T Consensus       933 ~E~ER~-rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q  986 (1259)
T KOG0163|consen  933 AEAERK-RREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQ  986 (1259)
T ss_pred             HHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            555444 45555565555554 445567888899999999999876666666666

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=82.31  E-value=19  Score=27.10  Aligned_cols=91  Identities=20%  Similarity=0.311  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHH----HHhhhhhhhhhhhHHHHHhHHHH
Q psy9160         142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYI----QQKDDKRVYYEGLQDKLTQVKDA  217 (297)
Q Consensus       142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i----~~~ee~R~~~E~LQDKL~qIkeA  217 (297)
                      ...-+..|.+...-+...+.+.. .|.||.       .|.....+-..|-..|    ...+..+..++..++.|..-.--
T Consensus        17 ~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~   88 (123)
T PF02050_consen   17 AEEQLEQLQQERQEYQEQLSESQ-QGVSVA-------QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE   88 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHT------SGGGHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-CCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666655544 344332       3333444444444444    45556677778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy9160         218 RAALNALREEHNEKLRREAQIAE  240 (297)
Q Consensus       218 R~ALDaLReeH~eklr~~aeEae  240 (297)
                      +.+++-|++.|....+.+..-+|
T Consensus        89 ~k~~e~L~e~~~~~~~~~~~r~E  111 (123)
T PF02050_consen   89 RKKLEKLKERRREEYQQEEERRE  111 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888898888877766655444

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=81.30  E-value=21  Score=30.33  Aligned_cols=56  Identities=29%  Similarity=0.285  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHH------HhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhh
Q psy9160         143 DDFIRALKSQVEIFV------NRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKR  201 (297)
Q Consensus       143 eef~~~l~sqVeiFv------NRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R  201 (297)
                      .-|=+-|+.+.++||      ||..||.--|=+-.   -..+|-.+|+.+|.-|=...-.+.+-+
T Consensus        11 ~~fdDILk~s~~m~~qeqik~~ql~s~vi~G~n~~---l~k~L~eki~~Fh~ILDd~~~~l~~sk   72 (105)
T PF11214_consen   11 QCFDDILKVSGEMFVQEQIKNNQLQSNVITGFNNQ---LQKQLSEKIHKFHSILDDTESKLNDSK   72 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356688999999995      55555555554333   266777777777776544443333333

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
3f1i_H	98	Human Escrt-0 Core Complex Length = 98		9e-29

>pdb|3F1I|H Chain H, Human Escrt-0 Core Complex Length = 98

Iteration: 1
 Score =  123 bits (309), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 76/95 (80%)
Query: 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRV 202
           + F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I  MH +LL+ + Q D++R+
Sbjct: 3   EQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRL 62
Query: 203 YYEGLQDKLTQVKDARAALNALREEHNEKLRREAQ 237
           YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+
Sbjct: 63  YYEGLQDKLAQIRDARGALSALREEHREKLRRAAE 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
3f1i_H	98	Hepatocyte growth factor-regulated tyrosine kinas	6e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-05

>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Length = 98

 Score =  128 bits (324), Expect = 6e-38
 Identities = 58/95 (61%), Positives = 76/95 (80%)

Query: 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRV 202
           + F++AL++ V  FVNRMKSN  RGRSI NDS+V +LF +I  MH +LL+ + Q D++R+
Sbjct: 3   EQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRL 62

Query: 203 YYEGLQDKLTQVKDARAALNALREEHNEKLRREAQ 237
           YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+
Sbjct: 63  YYEGLQDKLAQIRDARGALSALREEHREKLRRAAE 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 46/321 (14%), Positives = 91/321 (28%), Gaps = 65/321 (20%)

Query: 11  LSSLFDKNRSLAYIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKY-LDRS--YWE 67
           +  +   N    ++M   +      P      Y  Q +   N N   AKY + R   Y +
Sbjct: 83  VEEVLRINYK--FLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 68  QKK----VPPNHG-SHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYG------THG 116
            ++    + P       G  G       +G +   +A  +  SY  Q K           
Sbjct: 140 LRQALLELRPAKNVLIDGVLG-------SGKTW--VALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 117 SHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVE--------IFVNRMKSNS---- 164
           +  S +  +     +    + + T   D    +K ++         +  ++   N     
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 165 --SRGRSIAN--DSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAA 220
              +     N  + S + L   +TT   ++  ++       +  +     LT  +     
Sbjct: 251 LNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 221 LNALREEHNEKLRREAQ---------IAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQ 271
           L  L     + L RE           IAE  +                 +     +  L 
Sbjct: 308 LKYLDCR-PQDLPREVLTTNPRRLSIIAESIRD---------GLATWDNWKHVNCD-KLT 356

Query: 272 KIQEQEYEMQRRQEQQKQYYM 292
            I E    +    E +K +  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 32/158 (20%)

Query: 115 HGSHYSTDHHMNHTSG-----------VTSPDEASD---TELDDFIRALKSQVEI-FVNR 159
           H  H    HHM+  +G           V       +    ++ D  +++ S+ EI  +  
Sbjct: 1   HHHH----HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56

Query: 160 MKSNSSRGRSI------ANDSSVQTLFV------NITTMHSRLLKYIQQKDDKRVYYEGL 207
            K   S    +        +  VQ  FV      N   + S +    +Q       Y   
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 208 QDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQI 245
           +D+L       A  N  R +   KLR+        K +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 62/197 (31%)

Query: 148 ALKSQVEIFVNRMKSNSSRGR----SIANDSSVQTLFVNITT------------------ 185
            L + +E  +N ++    R      S+   S       +I T                  
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTILLSLIWFDVIKSDVMVV 407

Query: 186 ---MHSR-LLKYIQQKDDKRVYYEGLQDKLTQVKDARAAL--------NALREEHNEKLR 233
              +H   L++  +Q  +  +    +  +L    +   AL        N  +   ++ L 
Sbjct: 408 VNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 234 REAQ-------IAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQ-- 284
                      I    K I+   ++ L R     +L + R L  QKI+            
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---FLDF-RFLE-QKIRHDSTAWNASGSI 520

Query: 285 ----EQQKQY--YMQNN 295
               +Q K Y  Y+ +N
Sbjct: 521 LNTLQQLKFYKPYICDN 537

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 16/78 (20%)

Query: 219 AALNALREEHNEKLR--REAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQ 276
           A  + L +E  E +R  RE    E++K++Q   +LD   K  ++  + +   A + ++E 
Sbjct: 75  AQADRLTQEP-ESIRKWRE----EQRKRLQ---ELDAASKVMEQEWREK---AKKDLEEW 123

Query: 277 EYEMQRRQEQQKQYYMQN 294
             +  R+ EQ ++  + N
Sbjct: 124 -NQ--RQSEQVEKNKINN 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3f1i_H	98	Hepatocyte growth factor-regulated tyrosine kinas	100.0
2d3g_P	26	Ubiquitin interacting motif from hepatocyte growth	97.27
2pjw_H	88	Uncharacterized protein YHL002W; GAT domain, core	97.09
2pjw_V	91	Vacuolar protein sorting-associated protein 27; GA	96.45
1wrd_A	103	TOM1, target of MYB protein 1; three-helix bundle,	90.39
1wr6_A	111	ADP-ribosylation factor binding protein GGA3; thre	86.8
1oxz_A	186	ADP-ribosylation factor binding protein GGA1; GAT	85.47
1naf_A	158	ADP-ribosylation factor binding protein GGA1, golg	84.77
1o3x_A	140	ADP-ribosylation factor binding protein GGA1; prot	83.5

>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.5e-50  Score=322.48  Aligned_cols=98  Identities=59%  Similarity=0.916  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHH
Q psy9160         141 ELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAA  220 (297)
Q Consensus       141 e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~A  220 (297)
                      ++++||++|++||++|+||||||++|||||+||+||||||++||+|||+||+||+++||+|+|||+|||||+||+|||+|
T Consensus         1 ~~~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~A   80 (98)
T 3f1i_H            1 SHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGA   80 (98)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy9160         221 LNALREEHNEKLRREAQI  238 (297)
Q Consensus       221 LDaLReeH~eklr~~aeE  238 (297)
                      ||+||+||++|+|+++||
T Consensus        81 LdaLR~eH~~Klrr~aee   98 (98)
T 3f1i_H           81 LSALREEHREKLRRAAEE   98 (98)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999999875

>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.0018  Score=51.13  Aligned_cols=75  Identities=15%  Similarity=0.331  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhhhhhccCC-C-cccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q psy9160         149 LKSQVEIFVNRMKSNSSRG-R-SIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALRE  226 (297)
Q Consensus       149 l~sqVeiFvNRmkSNs~RG-R-sIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLRe  226 (297)
                      =...|+.++++|+..+..| - -|..|+.|+.||..++++-|+|-+.|.+--.|+..+-.|.+||.   .|+...|.|-+
T Consensus         8 q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~---~a~~~Yd~lle   84 (88)
T 2pjw_H            8 QKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLA---NAERSYNQLMD   84 (88)
T ss_dssp             THHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            3456999999999998766 3 89999999999999999999999999999999999999999988   56777777755

>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0075  Score=47.85  Aligned_cols=64  Identities=23%  Similarity=0.264  Sum_probs=54.4

Q ss_pred             HHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHH
Q psy9160         156 FVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNAL  224 (297)
Q Consensus       156 FvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaL  224 (297)
                      .|+||+.-  .+..|..|+.||.||.+++.+-|+|.+.|.+--.|...|-.+.+||..   |+.-.|.|
T Consensus        17 lv~~~k~~--~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~---a~rlYD~l   80 (91)
T 2pjw_V           17 LVEKMKSR--PLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE---IMNIYDRL   80 (91)
T ss_dssp             HHHHHHTC--SCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHhC--CcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            35788866  688999999999999999999999999999999999888888888875   44555544

>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1

Probab=90.39  E-value=0.44  Score=37.74  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhh--HHHHHhHHH
Q psy9160         140 TELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGL--QDKLTQVKD  216 (297)
Q Consensus       140 ~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~L--QDKL~qIke  216 (297)
                      .....-+..++..|++|..-+.+..-.+..-..|..++.||.++-.|||+|+++|...++.-.-++.|  .|.|.++=.
T Consensus         9 ~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~vl~   87 (103)
T 1wrd_A            9 GKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFL   87 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHHHH
Confidence            34456678889999998776665434344456778999999999999999999998777666555544  466665543

>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G

Probab=86.80  E-value=1.1  Score=36.11  Aligned_cols=69  Identities=16%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhh---hhhhhhhhHHHHHhH
Q psy9160         146 IRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDD---KRVYYEGLQDKLTQV  214 (297)
Q Consensus       146 ~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee---~R~~~E~LQDKL~qI  214 (297)
                      +..++.-|.+|-.-+.+...-|.+...+..++.||.++-.|||+|.+.|.+..|   .=...=.+.|.|+++
T Consensus        10 Le~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~v   81 (111)
T 1wr6_A           10 LEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRV   81 (111)
T ss_dssp             HHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHH
Confidence            456777788876666655544444677789999999999999999999977632   222233445555554

>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1

Probab=85.47  E-value=3  Score=36.45  Aligned_cols=70  Identities=20%  Similarity=0.360  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCccc--ccchhhhHHHhhhhhHHHHHHHHHHhh-hhhhhhh--hhHHHHHhHH
Q psy9160         145 FIRALKSQVEIFVNRMKSNSSRGRSIA--NDSSVQTLFVNITTMHSRLLKYIQQKD-DKRVYYE--GLQDKLTQVK  215 (297)
Q Consensus       145 f~~~l~sqVeiFvNRmkSNs~RGRsIa--nDssVqtLF~~lt~MH~qLL~~i~~~e-e~R~~~E--~LQDKL~qIk  215 (297)
                      -+..++..|++|..-+. +...|-+..  .|..++.||.++-.||++|.+.|.+.. +--.-+|  .+.|.|+++=
T Consensus        77 eLe~V~~nv~LL~EML~-~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl  151 (186)
T 1oxz_A           77 AIEEVNNNVKLLTEMVM-SHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVI  151 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHH
Confidence            44566667777655444 445555544  789999999999999999999998753 3333444  3456666653

>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1

Probab=84.77  E-value=3.3  Score=35.36  Aligned_cols=71  Identities=21%  Similarity=0.375  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCccc--ccchhhhHHHhhhhhHHHHHHHHHHh-hhhhhhhh--hhHHHHHhHHH
Q psy9160         145 FIRALKSQVEIFVNRMKSNSSRGRSIA--NDSSVQTLFVNITTMHSRLLKYIQQK-DDKRVYYE--GLQDKLTQVKD  216 (297)
Q Consensus       145 f~~~l~sqVeiFvNRmkSNs~RGRsIa--nDssVqtLF~~lt~MH~qLL~~i~~~-ee~R~~~E--~LQDKL~qIke  216 (297)
                      -+..++..|++|..-+. +...|-+..  .|..++.||.++-.|+|+|.+.|.+. |+--.-+|  .+.|.|+++=.
T Consensus        61 eLe~V~~nv~LL~EML~-~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~  136 (158)
T 1naf_A           61 AIEEVNNNVKLLTEMVM-SHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVIN  136 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHH
Confidence            45666777777755444 444555443  78999999999999999999999875 33334444  34566666543

>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A

Probab=83.50  E-value=2.8  Score=34.98  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCCccc--ccchhhhHHHhhhhhHHHHHHHHHHh-hhhhhhhhh--hHHHHHhHH
Q psy9160         145 FIRALKSQVEIFVNRMKSNSSRGRSIA--NDSSVQTLFVNITTMHSRLLKYIQQK-DDKRVYYEG--LQDKLTQVK  215 (297)
Q Consensus       145 f~~~l~sqVeiFvNRmkSNs~RGRsIa--nDssVqtLF~~lt~MH~qLL~~i~~~-ee~R~~~E~--LQDKL~qIk  215 (297)
                      -+..++..|++|-. |=++...|-+..  ++..++.||.++..|||+|.+.|.+. ++--.-++.  +.|.|+++=
T Consensus        52 eLe~v~~n~~LL~E-ML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ln~vl  126 (140)
T 1o3x_A           52 AIEEVNNNVKLLTE-MVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVI  126 (140)
T ss_dssp             HHHHHHHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHH
Confidence            45566777777654 445556666665  58899999999999999999999775 333344443  456666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.003

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 23/191 (12%), Positives = 56/191 (29%), Gaps = 1/191 (0%)

Query: 100 KYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIF-VN 158
           K  D     Q+      S             V +   +       F++ L+   + +   
Sbjct: 108 KRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEE 167

Query: 159 RMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDAR 218
             K   +         S +++   I      L +  ++ + +RV  E  Q     + + +
Sbjct: 168 PRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ 227

Query: 219 AALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEY 278
                + E+     +   +    + +      L    +     LQ Q  L  +  Q++  
Sbjct: 228 RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287

Query: 279 EMQRRQEQQKQ 289
            M+   +  + 
Sbjct: 288 IMKNEIQDLQT 298

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1wrda1	93	Target of Myb protein 1, TOM1 {Human (Homo sapiens	90.91
d1wr6a1	90	ADP-ribosylation factor binding protein Gga3 {Huma	87.67

>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: Target of Myb protein 1, TOM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.25  Score=36.37  Aligned_cols=56  Identities=16%  Similarity=0.214  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhh
Q psy9160         146 IRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKR  201 (297)
Q Consensus       146 ~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R  201 (297)
                      +..++..|++|.+=+......+.+++.+..++.||.+.-.|||+++++|...+|.-
T Consensus        10 Le~v~~n~~lL~eML~~~~p~~~~~~d~eli~eL~~~C~~~q~~i~~li~~~~dee   65 (93)
T d1wrda1          10 LEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQ   65 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence            56677778888776666555566777779999999999999999999999987643

>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=0.54  Score=34.47  Aligned_cols=69  Identities=14%  Similarity=0.255  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhh-hhhhhhh--hhHHHHHhH
Q psy9160         146 IRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKD-DKRVYYE--GLQDKLTQV  214 (297)
Q Consensus       146 ~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~e-e~R~~~E--~LQDKL~qI  214 (297)
                      ++.++..+++|..=+.+...-+.+...+..++.||.+.-.|+|+++++|.+.. +--.-++  .+.|+|.++
T Consensus         8 le~v~~n~~lL~eML~~~~p~~~~~~~~eli~eL~~~C~~~qp~i~~li~~~~~dee~l~elL~~ND~L~~v   79 (90)
T d1wr6a1           8 LEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRV   79 (90)
T ss_dssp             HHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhHHHHHH
Confidence            45678888888776665544444555678999999999999999999997653 3223333  344666554