Psyllid ID: psy9164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHccccccEEEEEccEEccccHHHHHHHHHHccccEEEEEEEEccccccEEEEEccccEEEEEEEccccccccEEEEEEEEccHHHHccccccccccccccHHHHHccccEEEEEEccEEcccccHHHHHHHHHHHHHHcccccccccccccEEEccEEEccccEEccccEEcccEEEccccEEccccEEccEEEccccEEccccEEEccEEccccEEccccEEEcEEEEcccEEcccEEEcccEEEcccEEEccccEEccccEEEccEEccccEEEcccccccccEEEccEEEEcccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcHHHccEEEEEEEcccccccHHHHHHHHHHHccccccEEEEEccEEccccHHHHHHHHHHcccEEEEEEEEcccccccEEEEEcccccEEEEEEccccccccEEEcEEEEEcHHHHHHcccccccHHHHHHHHHHccccEEEEEcccccHccccHHHHHHHHHHHHHHHcccccHHccccccEcccEEEccccEEccccEEcccEEEcccEEEcccEEEEEEEEEccEEEcccEEEEcEEEEcccEEcccEEEEccEEEccEEEcccEEEcccEEEccEEEEcccEEEccEEEEccEEEEccccEcccEEEccccEEEccEEEEccEEEEcccEEccccccccEcc
Coil and Loop (DISEMBL)
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFsheneplgtagpLALAKDILnksqepffvlnsdiicdfpfkDLVSFhknhgkegTIVVTQVEEPSKYGVVLYNehgciesfiEKPQEFVSNKInagmyifnpsvldrieikptsiekeifplMSKEKQLYAMELKGfwmdvgqprdFLKGMCLYLNSLRQKRpkllkegdgivgnvlvdptatigpgcrigpnvtigpgvvieggvcikrsTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIigwkcvvgqwvrmenitvlgedvivqdelyvnggqvlphksigsslhmlgedvivqdelyvnggqvlphksigssvpepqiim
Flexible Loop (DISEMBL)
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPtatigpgcrigpnvtigpgVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGqvlphksigssvpepqiim
Low Complexity Region (SEG)
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM
Disordered region (IsUnstruct)
***HQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVL****************
Disordered Region (DISOPRED)
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ*****LKE*DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM
Disordered Region (DISEMBL)
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM
Disordered Region (DISPRO)
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q295Y7	371	Mannose-1-phosphate guany	yes	N/A	0.842	0.862	0.725	1e-146
Q7JZB4	369	Mannose-1-phosphate guany	yes	N/A	0.842	0.867	0.731	1e-146
Q8BTZ7	360	Mannose-1-phosphate guany	yes	N/A	0.842	0.888	0.642	1e-130
Q9Y5P6	360	Mannose-1-phosphate guany	no	N/A	0.842	0.888	0.636	1e-130
P0C5I2	360	Mannose-1-phosphate guany	yes	N/A	0.842	0.888	0.639	1e-130
Q6DBU5	360	Mannose-1-phosphate guany	yes	N/A	0.842	0.888	0.639	1e-129
Q2YDJ9	360	Mannose-1-phosphate guany	yes	N/A	0.842	0.888	0.639	1e-128
Q68EY9	360	Mannose-1-phosphate guany	N/A	N/A	0.842	0.888	0.636	1e-127
Q68EQ1	360	Mannose-1-phosphate guany	yes	N/A	0.842	0.888	0.630	1e-126
A2VD83	360	Mannose-1-phosphate guany	N/A	N/A	0.842	0.888	0.625	1e-125

>sp|Q295Y7|GMPPB_DROPS Mannose-1-phosphate guanyltransferase beta OS=Drosophila pseudoobscura pseudoobscura GN=GA10892 PE=3 SV=1

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/343 (72%), Positives = 289/343 (84%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE  KLG+ L+FSHE EPLGTAGPLAL
Sbjct: 45  ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEADKLGVELIFSHETEPLGTAGPLAL 104

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL+ S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E 
Sbjct: 105 AKSILSASPEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDED 164

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI++FIEKPQEFVSNKINAG+YIFNPSVL+RIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 165 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLERIEVKPTSIEKEVFPAMAEQQELYAMDLT 224

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTATIG GCRIGPNVT
Sbjct: 225 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTATIGEGCRIGPNVT 284

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP V+IE GVCIKR+TIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 285 IGPDVIIEDGVCIKRATILKGAIVRSHSWLDSCIVGWRSTVGRWVRIE------------ 332

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELYVNGGQVLPHKSI +S+
Sbjct: 333 -----------GITVLGEDVIVKDELYVNGGQVLPHKSIAASV 364

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3

>sp|Q7JZB4|GMPPB_DROME Mannose-1-phosphate guanyltransferase beta OS=Drosophila melanogaster GN=CG1129 PE=2 SV=1

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/343 (73%), Positives = 288/343 (83%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE KKLG+ L+FSHE EPLGTAGPLAL
Sbjct: 43  ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPLAL 102

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL  S EPFFVLNSD+ICDFPFK LV FH NHGKEGTIVVT+VEEPSKYGVVLY+E+
Sbjct: 103 AKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEEPSKYGVVLYDEN 162

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI++FIEKPQEFVSNKINAG+YIFNPSVLDRIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 163 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPTSIEKEVFPEMTQQQELYAMDLT 222

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTA IG GCRIGPNVT
Sbjct: 223 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVT 282

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP VVIE GVCIKRSTIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 283 IGPDVVIEDGVCIKRSTILKGAIVRSHSWLDSCIVGWRSTVGRWVRIE------------ 330

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELY+NGGQVLPHKSI +S+
Sbjct: 331 -----------GITVLGEDVIVKDELYINGGQVLPHKSIAASV 362

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q8BTZ7|GMPPB_MOUSE Mannose-1-phosphate guanyltransferase beta OS=Mus musculus GN=Gmppb PE=2 SV=1

 Score =  466 bits (1200), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/344 (64%), Positives = 273/344 (79%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALAAAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
           A+D+L+++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct: 93  ARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G I  F+EKPQ FVSNKINAGMYI +P+VL RI++KPTSIEKEIFP+M+KE QLYAMEL
Sbjct: 153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMCL+L SLRQK P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCLFLQSLRQKHPERLYSGPGIVGNVLVDPSARIGQNCSIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN          
Sbjct: 273 SLGPGVVVEDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHKSIG S+
Sbjct: 323 -------------VTVLGEDVIVNDELYLNGASVLPHKSIGESV 353

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q9Y5P6|GMPPB_HUMAN Mannose-1-phosphate guanyltransferase beta OS=Homo sapiens GN=GMPPB PE=1 SV=2

 Score =  464 bits (1194), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/344 (63%), Positives = 274/344 (79%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALAAAGVDHVILAVSYMSQVLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
           A+D+L+++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct: 93  ARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G I  F+EKPQ FVSNKINAGMYI +P+VL RI+++PTSIEKE+FP+M+KE QLYAMEL
Sbjct: 153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMCL+L SLRQK+P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCLFLQSLRQKQPERLCSGPGIVGNVLVDPSARIGQNCSIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN          
Sbjct: 273 SLGPGVVVEDGVCIRRCTVLRDARIRSHSWLESCIVGWRCRVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHKSIG S+
Sbjct: 323 -------------VTVLGEDVIVNDELYLNGASVLPHKSIGESV 353

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|P0C5I2|GMPPB_PIG Mannose-1-phosphate guanyltransferase beta OS=Sus scrofa GN=GMPPB PE=1 SV=1

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/344 (63%), Positives = 273/344 (79%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALASAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
           A+D+L+++ EPFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct: 93  ARDLLSETAEPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G I  F+EKPQ FVSNKINAGMYI +P+VL RI+++PTSIEKEIFP+M+KE QLYAMEL
Sbjct: 153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLQPTSIEKEIFPVMAKEGQLYAMEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMCL+L SLRQK+P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCLFLQSLRQKQPEQLCSGPGIVGNVLVDPSARIGKNCSIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+ W+C VGQWVRMEN          
Sbjct: 273 SLGPGVVVEDGVCIRRCTVLRDARIRSHSWLESCIVCWRCRVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHKSIG S+
Sbjct: 323 -------------VTVLGEDVIVNDELYLNGASVLPHKSIGESV 353

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q6DBU5|GMPPB_DANRE Mannose-1-phosphate guanyltransferase beta OS=Danio rerio GN=gmppb PE=2 SV=1

 Score =  460 bits (1184), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/344 (63%), Positives = 270/344 (78%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AGVR VILAVSY +E +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALVKAGVRHVILAVSYMSELLEREMRAQEQRLGIKISLSHEKEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
           A+++L  +QEPFFVLNSD+ICDFPF D++ FH+ HG+EGTIVVT+VEEPSKYGVV+Y  +
Sbjct: 93  ARELLTDNQEPFFVLNSDVICDFPFDDMLKFHQQHGREGTIVVTKVEEPSKYGVVVYEGD 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G I  F+EKPQ FVSNKINAGMYIF+P++L RI+++PTSIEKEIFP+M++E QLYAMEL
Sbjct: 153 SGRIHRFVEKPQVFVSNKINAGMYIFSPAMLRRIQLRPTSIEKEIFPVMAEEGQLYAMEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMC+YL S+RQ+ P+ L+ G G +GNVLVDPTA IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCMYLQSVRQQAPERLRAGPGFLGNVLVDPTAVIGQNCTIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           TIG GVV+E GV +KR TIL+ A ++SHSWLE CI+GW   VGQWVRMEN          
Sbjct: 273 TIGAGVVLEDGVRVKRCTILKGAHIRSHSWLESCIVGWSSSVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHKSI  S+
Sbjct: 323 -------------VTVLGEDVIVNDELYINGANVLPHKSITDSV 353

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q2YDJ9|GMPPB_BOVIN Mannose-1-phosphate guanyltransferase beta OS=Bos taurus GN=GMPPB PE=2 SV=1

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/344 (63%), Positives = 271/344 (78%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + +KLGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALAAAGVDHVILAVSYMSQVLEKEMKAQEQKLGIRISMSHEEEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
           A+D+L ++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct: 93  ARDLLCETADPFFVLNSDVICDFPFEAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G +  F+EKPQ FVSNKINAG+YI +PSVL RI+++PTSIEKEIFP+M+KE QLYAMEL
Sbjct: 153 TGRVHRFVEKPQVFVSNKINAGVYILSPSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMCL+L SLRQK P+ L  G GIVGNVLVDP A IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCLFLKSLRQKHPEQLCSGPGIVGNVLVDPRARIGENCSIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN          
Sbjct: 273 SLGPGVVVEDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHKSIG S+
Sbjct: 323 -------------VTVLGEDVIVNDELYLNGASVLPHKSIGESV 353

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EY9|GMPBA_XENLA Mannose-1-phosphate guanyltransferase beta-A OS=Xenopus laevis GN=gmppb-a PE=2 SV=1

 Score =  456 bits (1172), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/344 (63%), Positives = 268/344 (77%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AGV  VILAVSY ++ +E E+  + K+LGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALVKAGVTHVILAVSYMSDMLEKEMKEQEKRLGIRISMSHEKEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY-NE 119
           A+++L ++ EPFFVLNSD+ICDFPF+D+V FHK+HGKEGTIVVT+VEEPSKYGVV+Y  E
Sbjct: 93  ARELLTENSEPFFVLNSDVICDFPFEDMVRFHKHHGKEGTIVVTKVEEPSKYGVVVYETE 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G I+ F+EKPQ FVSNKIN+G+YIF+P+VLDRI+++PTSIEKEIFP M++E QLYAMEL
Sbjct: 153 SGQIQRFVEKPQVFVSNKINSGLYIFSPAVLDRIQLRPTSIEKEIFPAMAQEGQLYAMEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMC+YL S+RQK P+ L  G G +GNVLVDPTA IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCMYLQSVRQKHPEWLHAGPGFIGNVLVDPTAKIGQNCSIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           TIGPGV +E GV IKR T+++ + + SHSWLE  I+GW   VGQWVRMEN          
Sbjct: 273 TIGPGVTVEDGVRIKRCTVMKGSRLHSHSWLESSIVGWSSSVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHK I  S+
Sbjct: 323 -------------VTVLGEDVIVNDELYLNGANVLPHKCISESV 353

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EQ1|GMPPB_XENTR Mannose-1-phosphate guanyltransferase beta OS=Xenopus tropicalis GN=gmppb PE=2 SV=1

 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/344 (63%), Positives = 268/344 (77%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AGV  VILAVSY ++ +E E+  + K+LGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALVKAGVNHVILAVSYMSDMLEKEMKEQEKRLGIRISMSHEKEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
           A+++L ++ +PFFVLNSD+ICDFPF+++V FHK+HGKEGTIVVT+VEEPSKYGVV+Y  E
Sbjct: 93  ARELLTENSDPFFVLNSDVICDFPFEEMVRFHKHHGKEGTIVVTKVEEPSKYGVVVYEAE 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G I+ F+EKPQ FVSNKIN+G+YIF+P+VLDRI+++PTSIEKEIFP M++E QL+AMEL
Sbjct: 153 SGQIQRFVEKPQVFVSNKINSGLYIFSPAVLDRIQLRPTSIEKEIFPAMAQEGQLFAMEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMC+YL S+RQK P+ L  G G +GNVLVDPTA IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCMYLQSVRQKHPEWLHVGPGFIGNVLVDPTAKIGQNCSIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           TIGPGV +E GV IKR TI++ + + SHSWLE  I+GW   VGQWVRMEN          
Sbjct: 273 TIGPGVTVEDGVRIKRCTIMKGSRLHSHSWLESSIVGWSSSVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHK I  S+
Sbjct: 323 -------------VTVLGEDVIVNDELYLNGANVLPHKCISESV 353

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|A2VD83|GMPBB_XENLA Mannose-1-phosphate guanyltransferase beta-B OS=Xenopus laevis GN=gmppb-b PE=2 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 267/344 (77%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AGV  VILAVSY ++ +E E+  + K+LGI +  SHE EPLGTAGPLAL
Sbjct: 33  ILLHQVEALVKAGVTHVILAVSYMSDMLEKEMKEQEKRLGIRISMSHEKEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
           A+++L ++ EPFFVLNSD+ICDFPF+D+V FHK+HGKEGTIVVT+VEEPSKYGVV+Y  E
Sbjct: 93  ARELLTENSEPFFVLNSDVICDFPFEDMVRFHKHHGKEGTIVVTKVEEPSKYGVVIYEAE 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G I+ F+EKPQ FVSNKIN+G+YIF+P+VLDRI+++PTSIEKEIFP+M++E QL+A+EL
Sbjct: 153 SGRIQRFVEKPQVFVSNKINSGLYIFSPAVLDRIQLRPTSIEKEIFPVMAQEGQLFALEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
           +GFWMD+GQP+DFL GMC+YL S+R K P+ L  G G  GNVLVDPTA IG  C IGPNV
Sbjct: 213 QGFWMDIGQPKDFLTGMCMYLQSVRHKHPERLHVGPGFTGNVLVDPTAKIGQNCSIGPNV 272

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           TIGPGV +E GV IKR +I++ + + SHSWL+  I+GW   VGQWVRMEN          
Sbjct: 273 TIGPGVTVEDGVRIKRCSIMKGSRLHSHSWLQSSIVGWSSSVGQWVRMEN---------- 322

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                        +TVLGEDVIV DELY+NG  VLPHK I  S+
Sbjct: 323 -------------VTVLGEDVIVNDELYLNGANVLPHKCISESV 353

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
195343509	369	GM10777 [Drosophila sechellia] gi|194133	0.842	0.867	0.731	1e-145
195453988	371	GK12822 [Drosophila willistoni] gi|19417	0.842	0.862	0.728	1e-145
195497164	369	GE25436 [Drosophila yakuba] gi|194182088	0.842	0.867	0.728	1e-144
125776883	371	GA10892 [Drosophila pseudoobscura pseudo	0.842	0.862	0.725	1e-144
21355443	369	CG1129, isoform A [Drosophila melanogast	0.842	0.867	0.731	1e-144
194746556	371	GF18913 [Drosophila ananassae] gi|190628	0.842	0.862	0.720	1e-144
357603531	325	hypothetical protein KGM_00281 [Danaus p	0.836	0.978	0.727	1e-144
312374083	369	hypothetical protein AND_16491 [Anophele	0.842	0.867	0.735	1e-144
289740937	370	GDP-mannose pyrophosphorylase [Glossina	0.842	0.864	0.720	1e-144
194898616	369	GG12578 [Drosophila erecta] gi|190650568	0.842	0.867	0.728	1e-143

>gi|195343509|ref|XP_002038340.1| GM10777 [Drosophila sechellia] gi|194133361|gb|EDW54877.1| GM10777 [Drosophila sechellia]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/343 (73%), Positives = 289/343 (84%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE KKLG+ L+FSHE EPLGTAGPLAL
Sbjct: 43  ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPLAL 102

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL  S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E+
Sbjct: 103 AKTILAASSEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDEN 162

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI++FIEKPQEFVSNKINAG+YIFNPSVLDRIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 163 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPTSIEKEVFPAMAQQQELYAMDLT 222

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTA IG GCRIGPNVT
Sbjct: 223 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVT 282

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP VVIE GVCIKRSTIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 283 IGPDVVIEDGVCIKRSTILKGAIVRSHSWLDSCIVGWRSTVGRWVRIE------------ 330

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELY+NGGQVLPHKSI +S+
Sbjct: 331 -----------GITVLGEDVIVKDELYINGGQVLPHKSIAASV 362

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453988|ref|XP_002074034.1| GK12822 [Drosophila willistoni] gi|194170119|gb|EDW85020.1| GK12822 [Drosophila willistoni]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/343 (72%), Positives = 289/343 (84%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE  KLG+ L+FSHE EPLGTAGPLAL
Sbjct: 45  ILLHQLEALVDAGCRQVILAVSYRAEQMEQELKVEADKLGVELIFSHETEPLGTAGPLAL 104

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL+ S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E 
Sbjct: 105 AKPILSASSEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDEQ 164

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI++FIEKPQEFVSNKINAG+YIFNPSVL+RIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 165 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLERIEVKPTSIEKEVFPNMAQQQELYAMDLT 224

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTATIG GCRIGPNVT
Sbjct: 225 GFWMDIGQPKDFLTGMCLYLSSLRQKQSNKLYTGAGVVGNVLVDPTATIGEGCRIGPNVT 284

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP V+IE GVCIKRSTIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 285 IGPNVIIEDGVCIKRSTILKGAIVRSHSWLDSCIVGWRSTVGRWVRIE------------ 332

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELYVNGGQVLPHKSI +S+
Sbjct: 333 -----------GITVLGEDVIVKDELYVNGGQVLPHKSIAASV 364

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497164|ref|XP_002095987.1| GE25436 [Drosophila yakuba] gi|194182088|gb|EDW95699.1| GE25436 [Drosophila yakuba]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/343 (72%), Positives = 287/343 (83%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE KKLG+ L+FSHE EPLGTAGPLAL
Sbjct: 43  ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPLAL 102

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL  S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E+
Sbjct: 103 AKTILAASSEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDEN 162

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI +FIEKPQEFVSNKINAG+YIFNPSVLDRIE++PTSIEKE+FP M+++++LYAM+L 
Sbjct: 163 GCIRNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVRPTSIEKEVFPAMAQQQELYAMDLT 222

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTA IG GCRIGPNVT
Sbjct: 223 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVT 282

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP VVIE GVCIKRSTIL+ AIV SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 283 IGPDVVIEDGVCIKRSTILKGAIVHSHSWLDSCIVGWRSTVGRWVRIE------------ 330

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELY+NGGQVLPHKSI +S+
Sbjct: 331 -----------GITVLGEDVIVKDELYINGGQVLPHKSIAASV 362

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125776883|ref|XP_001359425.1| GA10892 [Drosophila pseudoobscura pseudoobscura] gi|195152692|ref|XP_002017270.1| GL21618 [Drosophila persimilis] gi|121990043|sp|Q295Y7.1|GMPPB_DROPS RecName: Full=Mannose-1-phosphate guanyltransferase beta; AltName: Full=GDP-mannose pyrophosphorylase B; AltName: Full=GTP-mannose-1-phosphate guanylyltransferase beta gi|54639169|gb|EAL28571.1| GA10892 [Drosophila pseudoobscura pseudoobscura] gi|194112327|gb|EDW34370.1| GL21618 [Drosophila persimilis]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/343 (72%), Positives = 289/343 (84%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE  KLG+ L+FSHE EPLGTAGPLAL
Sbjct: 45  ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEADKLGVELIFSHETEPLGTAGPLAL 104

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL+ S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E 
Sbjct: 105 AKSILSASPEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDED 164

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI++FIEKPQEFVSNKINAG+YIFNPSVL+RIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 165 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLERIEVKPTSIEKEVFPAMAEQQELYAMDLT 224

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTATIG GCRIGPNVT
Sbjct: 225 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTATIGEGCRIGPNVT 284

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP V+IE GVCIKR+TIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 285 IGPDVIIEDGVCIKRATILKGAIVRSHSWLDSCIVGWRSTVGRWVRIE------------ 332

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELYVNGGQVLPHKSI +S+
Sbjct: 333 -----------GITVLGEDVIVKDELYVNGGQVLPHKSIAASV 364

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355443|ref|NP_649498.1| CG1129, isoform A [Drosophila melanogaster] gi|24644084|ref|NP_730877.1| CG1129, isoform B [Drosophila melanogaster] gi|122129600|sp|Q7JZB4.1|GMPPB_DROME RecName: Full=Mannose-1-phosphate guanyltransferase beta; AltName: Full=GDP-mannose pyrophosphorylase B; AltName: Full=GTP-mannose-1-phosphate guanylyltransferase beta gi|7296813|gb|AAF52089.1| CG1129, isoform B [Drosophila melanogaster] gi|10727176|gb|AAG22216.1| CG1129, isoform A [Drosophila melanogaster] gi|16768684|gb|AAL28561.1| HL02883p [Drosophila melanogaster] gi|17945978|gb|AAL49033.1| RE49494p [Drosophila melanogaster] gi|220943166|gb|ACL84126.1| CG1129-PA [synthetic construct] gi|220960314|gb|ACL92693.1| CG1129-PA [synthetic construct]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/343 (73%), Positives = 288/343 (83%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE KKLG+ L+FSHE EPLGTAGPLAL
Sbjct: 43  ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPLAL 102

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL  S EPFFVLNSD+ICDFPFK LV FH NHGKEGTIVVT+VEEPSKYGVVLY+E+
Sbjct: 103 AKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEEPSKYGVVLYDEN 162

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI++FIEKPQEFVSNKINAG+YIFNPSVLDRIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 163 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPTSIEKEVFPEMTQQQELYAMDLT 222

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTA IG GCRIGPNVT
Sbjct: 223 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVT 282

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP VVIE GVCIKRSTIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 283 IGPDVVIEDGVCIKRSTILKGAIVRSHSWLDSCIVGWRSTVGRWVRIE------------ 330

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELY+NGGQVLPHKSI +S+
Sbjct: 331 -----------GITVLGEDVIVKDELYINGGQVLPHKSIAASV 362

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746556|ref|XP_001955746.1| GF18913 [Drosophila ananassae] gi|190628783|gb|EDV44307.1| GF18913 [Drosophila ananassae]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/343 (72%), Positives = 289/343 (84%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE  KLG+ L+FSHE EPLGTAGPLAL
Sbjct: 45  ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEADKLGVELIFSHETEPLGTAGPLAL 104

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL+ S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E+
Sbjct: 105 AKSILSASTEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDEN 164

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI++FIEKPQEFVSNKINAG+YIFNPSVL+RIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 165 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLERIEVKPTSIEKEVFPAMAQQQELYAMDLT 224

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNV+VDPTA IG GCRIGPNVT
Sbjct: 225 GFWMDIGQPKDFLTGMCLYLSSLRQKQSSKLYTGPGVVGNVIVDPTAKIGEGCRIGPNVT 284

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP V+IE GVCIKRSTIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 285 IGPDVIIEDGVCIKRSTILKGAIVRSHSWLDSCIVGWRSTVGRWVRIE------------ 332

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELY+NGGQVLPHKSI +S+
Sbjct: 333 -----------GITVLGEDVIVKDELYINGGQVLPHKSIAASV 364

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603531|gb|EHJ63816.1| hypothetical protein KGM_00281 [Danaus plexippus]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/341 (72%), Positives = 283/341 (82%), Gaps = 23/341 (6%)

Query: 3   LHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAK 62
           +HQIEALVEAGV +VILAVSYRA+ ME ELT +  KLG+SL FSHE+EPLGTAGPLALA+
Sbjct: 1   MHQIEALVEAGVTQVILAVSYRADDMEKELTEQVSKLGVSLTFSHESEPLGTAGPLALAR 60

Query: 63  DILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGC 122
           D+L  S EPFFVLNSD+ICDFPFK+L  FH++HGKEGTIVVT+VEEPSKYGVV+Y + G 
Sbjct: 61  DLLTTSTEPFFVLNSDVICDFPFKELAKFHRSHGKEGTIVVTKVEEPSKYGVVVYKDGGE 120

Query: 123 IESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGF 182
           IESF+EKP EF+SNKINAG+YI NPSVL RIE++PTSIEKE+FP M+KE QLYAM+L+GF
Sbjct: 121 IESFVEKPTEFISNKINAGIYILNPSVLSRIELRPTSIEKEVFPYMAKEGQLYAMDLQGF 180

Query: 183 WMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIG 242
           WMDVGQP+DFL GMCLYLNSLRQK P +L EG G+VGNVL+DPTATIG GCRIGPNVTIG
Sbjct: 181 WMDVGQPKDFLTGMCLYLNSLRQKSPSMLYEGSGVVGNVLIDPTATIGKGCRIGPNVTIG 240

Query: 243 PGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKC 302
           P VVIE G CIKRSTILR AIV+ H+WLEGCI+GW+ VVG+WVRMEN             
Sbjct: 241 PHVVIEDGACIKRSTILRGAIVRQHAWLEGCIVGWRSVVGRWVRMEN------------- 287

Query: 303 VVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                      TVLGEDVIV+DELYVNGGQVLPHKSI  S+
Sbjct: 288 ----------TTVLGEDVIVKDELYVNGGQVLPHKSIALSV 318

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374083|gb|EFR21727.1| hypothetical protein AND_16491 [Anopheles darlingi]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/344 (73%), Positives = 283/344 (82%), Gaps = 24/344 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQIEALVEAGV +VILAVSYRAEQME EL ++ ++LG+ L+FSHE EPLGTAGPLAL
Sbjct: 42  ILLHQIEALVEAGVTQVILAVSYRAEQMEAELKLQVERLGVKLIFSHETEPLGTAGPLAL 101

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL +S EPFFVLNSDIICDFPFK+L  FH+ HG+EGTIVVT+VEEPSKYGVVLY + 
Sbjct: 102 AKSILAESTEPFFVLNSDIICDFPFKELEQFHRRHGREGTIVVTRVEEPSKYGVVLYADD 161

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI+SFIEKPQEFVSNKINAGMY+ NPSVL RIE+KPTSIEKEIFP MS EK LYA EL 
Sbjct: 162 GCIKSFIEKPQEFVSNKINAGMYVLNPSVLRRIELKPTSIEKEIFPAMSHEKDLYAFELN 221

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEG-DGIVGNVLVDPTATIGPGCRIGPNV 239
           GFWMD+GQPRDFL GMCLYL SLRQ++P+LL  G  G VGNVLVDPTA IG GCRIGPNV
Sbjct: 222 GFWMDIGQPRDFLTGMCLYLTSLRQRKPELLYSGPAGFVGNVLVDPTAKIGAGCRIGPNV 281

Query: 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
           TIGP VVIE GVCIKR TIL+DAI+KSHSWL+ CIIGW+CVVG+WVR+            
Sbjct: 282 TIGPNVVIEDGVCIKRCTILKDAIIKSHSWLDSCIIGWRCVVGRWVRL------------ 329

Query: 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                      E  TVLGEDVIVQDE+Y+NGGQVLPHKSI  S+
Sbjct: 330 -----------EGTTVLGEDVIVQDEIYINGGQVLPHKSIALSV 362

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740937|gb|ADD19216.1| GDP-mannose pyrophosphorylase [Glossina morsitans morsitans]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/343 (72%), Positives = 286/343 (83%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV AG  +VILAVSYRAEQME EL +E +KLG+ L+FSHE EPLGTAGPLAL
Sbjct: 44  ILLHQLEALVNAGCSQVILAVSYRAEQMEKELKIEAEKLGVELIFSHETEPLGTAGPLAL 103

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK+ILN S EPFFVLNSD+ICDFPFK L  +H+ HGKEGTIVVT+VEEPSKYGVV+Y+E 
Sbjct: 104 AKNILNASSEPFFVLNSDVICDFPFKQLEQYHRAHGKEGTIVVTKVEEPSKYGVVIYDET 163

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI+SFIEKPQEFVSNKINAG+YIFNPS+L+RIE++PTSIEKEIFP+M+++ QLYAMEL 
Sbjct: 164 GCIKSFIEKPQEFVSNKINAGIYIFNPSILERIEVRPTSIEKEIFPVMAEQNQLYAMELA 223

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL SLRQK+   L  G GIVGNVLVDP+A IG GCRIGPNVT
Sbjct: 224 GFWMDIGQPKDFLTGMCLYLTSLRQKQSSKLHSGPGIVGNVLVDPSAKIGNGCRIGPNVT 283

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP VVIE GVCIKRSTIL+ AI+KSHSWL+ CI+GW CVVG+WVR+E            
Sbjct: 284 IGPDVVIEDGVCIKRSTILKGAIIKSHSWLDSCIVGWHCVVGRWVRLE------------ 331

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DE+Y+NGGQVLPHKSI +S+
Sbjct: 332 -----------GITVLGEDVIVKDEIYINGGQVLPHKSIAASV 363

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194898616|ref|XP_001978865.1| GG12578 [Drosophila erecta] gi|190650568|gb|EDV47823.1| GG12578 [Drosophila erecta]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/343 (72%), Positives = 286/343 (83%), Gaps = 23/343 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +LLHQ+EALV+AG  +VILAVSYRAEQME EL VE KKLG+ L+FSHE EPLGTAGPLAL
Sbjct: 43  ILLHQLEALVDAGCCQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPLAL 102

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK IL  S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E+
Sbjct: 103 AKTILAASSEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDEN 162

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
           GCI +FIEKPQEFVSNKINAG+YIFNPSVLDRIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct: 163 GCINNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPTSIEKEVFPAMAQQQELYAMDLT 222

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTA IG GCRIGPNVT
Sbjct: 223 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVT 282

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
           IGP VVIE GVCIKRSTIL+ AIV SHSWL+ CI+GW+  VG+WVR+E            
Sbjct: 283 IGPDVVIEDGVCIKRSTILKGAIVHSHSWLDSCIVGWRSTVGRWVRIE------------ 330

Query: 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
                       ITVLGEDVIV+DELY+NGGQVLPHKSI +S+
Sbjct: 331 -----------GITVLGEDVIVKDELYINGGQVLPHKSIAASV 362

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
UNIPROTKB|Q295Y7	371	GA10892 "Mannose-1-phosphate g	0.784	0.803	0.768	5.3e-127
FB|FBgn0037279	369	CG1129 [Drosophila melanogaste	0.784	0.807	0.778	5.3e-127
UNIPROTKB|F6X690	387	GMPPB "Uncharacterized protein	0.9	0.883	0.644	4.6e-121
MGI|MGI:2660880	360	Gmppb "GDP-mannose pyrophospho	0.784	0.827	0.678	1.5e-113
UNIPROTKB|F1SPR4	360	GMPPB "Mannose-1-phosphate gua	0.784	0.827	0.678	1.5e-113
UNIPROTKB|E2R2I6	360	GMPPB "Uncharacterized protein	0.784	0.827	0.678	1.9e-113
RGD|1560458	360	Gmppb "GDP-mannose pyrophospho	0.784	0.827	0.675	1.9e-113
UNIPROTKB|Q9Y5P6	360	GMPPB "Mannose-1-phosphate gua	0.784	0.827	0.672	6.6e-113
UNIPROTKB|P0C5I2	360	GMPPB "Mannose-1-phosphate gua	0.784	0.827	0.675	1.4e-112
ZFIN|ZDB-GENE-040801-234	360	gmppb "GDP-mannose pyrophospho	0.784	0.827	0.678	1.4e-112

UNIPROTKB|Q295Y7 GA10892 "Mannose-1-phosphate guanyltransferase beta" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 229/298 (76%), Positives = 267/298 (89%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE  KLG+ L+FSHE EPLGTAGPLAL
Sbjct:    45 ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEADKLGVELIFSHETEPLGTAGPLAL 104

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
             AK IL+ S EPFFVLNSD+ICDFPFK LV FH+NHGKEGTIVVT+VEEPSKYGVVLY+E 
Sbjct:   105 AKSILSASPEPFFVLNSDVICDFPFKQLVQFHRNHGKEGTIVVTKVEEPSKYGVVLYDED 164

Query:   121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
             GCI++FIEKPQEFVSNKINAG+YIFNPSVL+RIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct:   165 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLERIEVKPTSIEKEVFPAMAEQQELYAMDLT 224

Query:   181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
             GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTATIG GCRIGPNVT
Sbjct:   225 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTATIGEGCRIGPNVT 284

Query:   241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             IGP V+IE GVCIKR+TIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E ITVLGE +I
Sbjct:   285 IGPDVIIEDGVCIKRATILKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVI 342

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0037279 CG1129 [Drosophila melanogaster (taxid:7227)]

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 232/298 (77%), Positives = 266/298 (89%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EALV+AG R+VILAVSYRAEQME EL VE KKLG+ L+FSHE EPLGTAGPLAL
Sbjct:    43 ILLHQLEALVDAGCRQVILAVSYRAEQMEKELKVEAKKLGVELIFSHETEPLGTAGPLAL 102

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
             AK IL  S EPFFVLNSD+ICDFPFK LV FH NHGKEGTIVVT+VEEPSKYGVVLY+E+
Sbjct:   103 AKTILAASSEPFFVLNSDVICDFPFKQLVQFHCNHGKEGTIVVTKVEEPSKYGVVLYDEN 162

Query:   121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK 180
             GCI++FIEKPQEFVSNKINAG+YIFNPSVLDRIE+KPTSIEKE+FP M+++++LYAM+L 
Sbjct:   163 GCIKNFIEKPQEFVSNKINAGIYIFNPSVLDRIEVKPTSIEKEVFPEMTQQQELYAMDLT 222

Query:   181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
             GFWMD+GQP+DFL GMCLYL+SLRQK+   L  G G+VGNVLVDPTA IG GCRIGPNVT
Sbjct:   223 GFWMDIGQPKDFLTGMCLYLSSLRQKQSPKLYTGPGVVGNVLVDPTAKIGEGCRIGPNVT 282

Query:   241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             IGP VVIE GVCIKRSTIL+ AIV+SHSWL+ CI+GW+  VG+WVR+E ITVLGE +I
Sbjct:   283 IGPDVVIEDGVCIKRSTILKGAIVRSHSWLDSCIVGWRSTVGRWVRIEGITVLGEDVI 340

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|F6X690 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 225/349 (64%), Positives = 283/349 (81%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALAAAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+D+L+++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct:    93 ARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYI NP+VL RI+++PTSIEKEIFP+M+KE QLYAMEL
Sbjct:   153 TGRIHRFVEKPQVFVSNKINAGMYILNPTVLRRIQLQPTSIEKEIFPVMAKEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMCL+L SLRQK+P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCLFLQSLRQKQPEQLCSGPGIVGNVLVDPSARIGQNCSIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM---ENITVLGEC 296
             ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWV +    +     EC
Sbjct:   273 SLGPGVVVEDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVSLWAGPDEERGREC 332

Query:   297 --IIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343
               +    C + + VRMEN+TVLGEDVIV DELY+NG  VLPHKSIG S+
Sbjct:   333 ARLTDQACPLLE-VRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESV 380

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:2660880 Gmppb "GDP-mannose pyrophosphorylase B" [Mus musculus (taxid:10090)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 203/299 (67%), Positives = 254/299 (84%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALAAAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+D+L+++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct:    93 ARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYI +P+VL RI++KPTSIEKEIFP+M+KE QLYAMEL
Sbjct:   153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMCL+L SLRQK P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCLFLQSLRQKHPERLYSGPGIVGNVLVDPSARIGQNCSIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN+TVLGE +I
Sbjct:   273 SLGPGVVVEDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVI 331

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|F1SPR4 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Sus scrofa (taxid:9823)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 203/299 (67%), Positives = 255/299 (85%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALASAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+D+L+++ EPFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct:    93 ARDLLSETAEPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYI +P+VL RI+++PTSIEKEIFP+M+KE QLYAMEL
Sbjct:   153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLQPTSIEKEIFPVMAKEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMCL+L SLRQK+P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCLFLQSLRQKQPEQLCSGPGIVGNVLVDPSARIGKNCSIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN+TVLGE +I
Sbjct:   273 SLGPGVVVEDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVI 331

GO:0005739 "mitochondrion" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2R2I6 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 203/299 (67%), Positives = 255/299 (85%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALAAAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+D+L+++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct:    93 ARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYI NP+VL RI+++PTSIEKEIFP+M+KE QLYAMEL
Sbjct:   153 TGRIHRFVEKPQVFVSNKINAGMYILNPTVLRRIQLQPTSIEKEIFPVMAKEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMCL+L SLRQK+P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCLFLQSLRQKQPEQLCSGPGIVGNVLVDPSARIGQNCSIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN+TVLGE +I
Sbjct:   273 SLGPGVVVEDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVI 331

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

RGD|1560458 Gmppb "GDP-mannose pyrophosphorylase B" [Rattus norvegicus (taxid:10116)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 202/299 (67%), Positives = 254/299 (84%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALAAAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+D+L+++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct:    93 ARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYI +P+VL RI++KPTSIEKEIFP+M+KE QLYAMEL
Sbjct:   153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMCL+L SLRQK P+ L  G G+VGNVLVDP+A IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCLFLQSLRQKHPERLYSGPGVVGNVLVDPSARIGQNCSIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN+TVLGE +I
Sbjct:   273 SLGPGVVVEDGVCIRRCTVLRDAHIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVI 331

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q9Y5P6 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Homo sapiens (taxid:9606)]

 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 201/299 (67%), Positives = 255/299 (85%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALAAAGVDHVILAVSYMSQVLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+D+L+++ +PFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct:    93 ARDLLSETADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYI +P+VL RI+++PTSIEKE+FP+M+KE QLYAMEL
Sbjct:   153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMCL+L SLRQK+P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCLFLQSLRQKQPERLCSGPGIVGNVLVDPSARIGQNCSIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+GW+C VGQWVRMEN+TVLGE +I
Sbjct:   273 SLGPGVVVEDGVCIRRCTVLRDARIRSHSWLESCIVGWRCRVGQWVRMENVTVLGEDVI 331

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|P0C5I2 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Sus scrofa (taxid:9823)]

 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 202/299 (67%), Positives = 254/299 (84%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EAL  AGV  VILAVSY ++ +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALASAGVDHVILAVSYMSQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+D+L+++ EPFFVLNSD+ICDFPF+ +V FH++HG+EG+I+VT+VEEPSKYGVV+   +
Sbjct:    93 ARDLLSETAEPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCEAD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYI +P+VL RI+++PTSIEKEIFP+M+KE QLYAMEL
Sbjct:   153 TGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLQPTSIEKEIFPVMAKEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMCL+L SLRQK+P+ L  G GIVGNVLVDP+A IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCLFLQSLRQKQPEQLCSGPGIVGNVLVDPSARIGKNCSIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             ++GPGVV+E GVCI+R T+LRDA ++SHSWLE CI+ W+C VGQWVRMEN+TVLGE +I
Sbjct:   273 SLGPGVVVEDGVCIRRCTVLRDARIRSHSWLESCIVCWRCRVGQWVRMENVTVLGEDVI 331

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IDA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-040801-234 gmppb "GDP-mannose pyrophosphorylase B" [Danio rerio (taxid:7955)]

 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 203/299 (67%), Positives = 252/299 (84%)

Query:     1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
             +LLHQ+EALV+AGVR VILAVSY +E +E E+  + ++LGI +  SHE EPLGTAGPLAL
Sbjct:    33 ILLHQVEALVKAGVRHVILAVSYMSELLEREMRAQEQRLGIKISLSHEKEPLGTAGPLAL 92

Query:    61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN-E 119
             A+++L  +QEPFFVLNSD+ICDFPF D++ FH+ HG+EGTIVVT+VEEPSKYGVV+Y  +
Sbjct:    93 ARELLTDNQEPFFVLNSDVICDFPFDDMLKFHQQHGREGTIVVTKVEEPSKYGVVVYEGD 152

Query:   120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
              G I  F+EKPQ FVSNKINAGMYIF+P++L RI+++PTSIEKEIFP+M++E QLYAMEL
Sbjct:   153 SGRIHRFVEKPQVFVSNKINAGMYIFSPAMLRRIQLRPTSIEKEIFPVMAEEGQLYAMEL 212

Query:   180 KGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNV 239
             +GFWMD+GQP+DFL GMC+YL S+RQ+ P+ L+ G G +GNVLVDPTA IG  C IGPNV
Sbjct:   213 QGFWMDIGQPKDFLTGMCMYLQSVRQQAPERLRAGPGFLGNVLVDPTAVIGQNCTIGPNV 272

Query:   240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298
             TIG GVV+E GV +KR TIL+ A ++SHSWLE CI+GW   VGQWVRMEN+TVLGE +I
Sbjct:   273 TIGAGVVLEDGVRVKRCTILKGAHIRSHSWLESCIVGWSSSVGQWVRMENVTVLGEDVI 331

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CO20	MPG1_CRYNJ	2, ., 7, ., 7, ., 1, 3	0.5258	0.8421	0.8791	yes	N/A
A3QMC8	GMPPB_CAEEL	2, ., 7, ., 7, ., 1, 3	0.5710	0.8578	0.8931	yes	N/A
O74484	MPG1_SCHPO	2, ., 7, ., 7, ., 1, 3	0.5480	0.8631	0.9035	yes	N/A
Q4I1Y5	MPG1_GIBZE	2, ., 7, ., 7, ., 1, 3	0.5628	0.8473	0.8846	yes	N/A
Q941T9	GMPP2_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.5536	0.8421	0.8864	yes	N/A
Q2YDJ9	GMPPB_BOVIN	2, ., 7, ., 7, ., 1, 3	0.6395	0.8421	0.8888	yes	N/A
Q68EY9	GMPBA_XENLA	2, ., 7, ., 7, ., 1, 3	0.6366	0.8421	0.8888	N/A	N/A
O74624	MPG1_HYPJE	2, ., 7, ., 7, ., 1, 3	0.5574	0.8421	0.8791	N/A	N/A
Q7RVR8	MPG1_NEUCR	2, ., 7, ., 7, ., 1, 3	0.5371	0.8368	0.8736	N/A	N/A
Q9P8N0	MPG1_PICAN	2, ., 7, ., 7, ., 1, 3	0.5290	0.8315	0.8681	N/A	N/A
Q9Y5P6	GMPPB_HUMAN	2, ., 7, ., 7, ., 1, 3	0.6366	0.8421	0.8888	no	N/A
Q68EQ1	GMPPB_XENTR	2, ., 7, ., 7, ., 1, 3	0.6308	0.8421	0.8888	yes	N/A
Q295Y7	GMPPB_DROPS	2, ., 7, ., 7, ., 1, 3	0.7259	0.8421	0.8625	yes	N/A
Q6BN12	MPG1_DEBHA	2, ., 7, ., 7, ., 1, 3	0.5115	0.8421	0.8839	yes	N/A
Q6FRY2	MPG12_CANGA	2, ., 7, ., 7, ., 1, 3	0.5246	0.8421	0.8864	no	N/A
Q8BTZ7	GMPPB_MOUSE	2, ., 7, ., 7, ., 1, 3	0.6424	0.8421	0.8888	yes	N/A
Q61S97	GMPPB_CAEBR	2, ., 7, ., 7, ., 1, 3	0.5698	0.8578	0.8956	N/A	N/A
Q7JZB4	GMPPB_DROME	2, ., 7, ., 7, ., 1, 3	0.7317	0.8421	0.8672	yes	N/A
Q9M2S0	GMPP2_ARATH	2, ., 7, ., 7, ., 1, 3	0.5229	0.8421	0.8791	no	N/A
P0C5I2	GMPPB_PIG	2, ., 7, ., 7, ., 1, 3	0.6395	0.8421	0.8888	yes	N/A
Q6DBU5	GMPPB_DANRE	2, ., 7, ., 7, ., 1, 3	0.6395	0.8421	0.8888	yes	N/A
Q70SJ2	MPG1_KLULA	2, ., 7, ., 7, ., 1, 3	0.5366	0.8315	0.8753	yes	N/A
Q54K39	GMPPB_DICDI	2, ., 7, ., 7, ., 1, 3	0.6017	0.8394	0.8885	yes	N/A
Q6Z9A3	GMPP3_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.5594	0.8421	0.8864	yes	N/A
Q9Y725	MPG11_CANGA	2, ., 7, ., 7, ., 1, 3	0.5275	0.8421	0.8864	yes	N/A
Q6CCU3	MPG1_YARLI	2, ., 7, ., 7, ., 1, 3	0.5086	0.8447	0.8842	yes	N/A
O93827	MPG1_CANAL	2, ., 7, ., 7, ., 1, 3	0.5404	0.8421	0.8839	N/A	N/A
P0CO21	MPG1_CRYNB	2, ., 7, ., 7, ., 1, 3	0.5258	0.8421	0.8791	N/A	N/A
Q4U3E8	MPG1_ASPFU	2, ., 7, ., 7, ., 1, 3	0.5287	0.8421	0.8791	no	N/A
P41940	MPG1_YEAST	2, ., 7, ., 7, ., 1, 3	0.5420	0.8421	0.8864	yes	N/A
O22287	GMPP1_ARATH	2, ., 7, ., 7, ., 1, 3	0.5449	0.8421	0.8864	yes	N/A
Q84JH5	GMPP1_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.5507	0.8421	0.8864	no	N/A
Q5B1J4	MPG1_EMENI	2, ., 7, ., 7, ., 1, 3	0.5287	0.8421	0.8791	yes	N/A
Q2UJU5	MPG1_ASPOR	2, ., 7, ., 7, ., 1, 3	0.5348	0.8315	0.8681	yes	N/A
Q752H4	MPG1_ASHGO	2, ., 7, ., 7, ., 1, 3	0.5217	0.8421	0.8864	yes	N/A
P37820	MPG1_SULAC	2, ., 7, ., 7, ., 1, 3	0.2828	0.8447	0.8941	yes	N/A
A2VD83	GMPBB_XENLA	2, ., 7, ., 7, ., 1, 3	0.625	0.8421	0.8888	N/A	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.976
3rd Layer	2.7.7.13	0.991

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	380
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	1e-132
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	8e-78
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	2e-59
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	2e-44
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	9e-43
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	1e-41
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	5e-40
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	1e-36
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	5e-32
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	7e-30
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	2e-29
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	1e-28
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	2e-27
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	1e-24
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	3e-23
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	4e-22
cd02524	253	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr	2e-21
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	8e-20
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	5e-19
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	2e-16
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	5e-16
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	2e-15
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	2e-15
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	3e-15
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	1e-14
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	1e-13
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	2e-13
cd02538	240	cd02538, G1P_TT_short, G1P_TT_short is the short f	3e-13
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	8e-13
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	1e-12
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	4e-12
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	5e-12
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	3e-11
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	4e-11
TIGR01099	260	TIGR01099, galU, UTP-glucose-1-phosphate uridylylt	9e-10
PRK15480	292	PRK15480, PRK15480, glucose-1-phosphate thymidylyl	2e-09
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-09
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	3e-09
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	1e-08
cd02508	200	cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory	2e-08
PLN02241	436	PLN02241, PLN02241, glucose-1-phosphate adenylyltr	1e-07
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	2e-07
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	2e-07
TIGR02092	369	TIGR02092, glgD, glucose-1-phosphate adenylyltrans	3e-07
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	7e-07
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	1e-06
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	1e-06
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	1e-06
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	1e-06
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	4e-06
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	4e-06
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	5e-06
TIGR01207	286	TIGR01207, rmlA, glucose-1-phosphate thymidylyltra	8e-06
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	1e-05
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	1e-05
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	2e-05
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	2e-05
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	5e-05
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	5e-05
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	5e-05
cd04183	231	cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv	5e-05
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	7e-05
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	8e-05
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	9e-05
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	1e-04
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	2e-04
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	3e-04
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	3e-04
PRK14359	430	PRK14359, glmU, bifunctional N-acetylglucosamine-1	4e-04
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	5e-04
PRK09451	456	PRK09451, glmU, bifunctional N-acetylglucosamine-1	7e-04
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	9e-04
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	0.001
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	0.001
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	0.002
PRK10122	297	PRK10122, PRK10122, GalU regulator GalF; Provision	0.002
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	0.002
PRK00725	425	PRK00725, glgC, glucose-1-phosphate adenylyltransf	0.002
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	0.002
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	0.003
cd05825	107	cd05825, LbH_wcaF_like, wcaF-like: This group is c	0.003
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	0.004

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score =  376 bits (968), Expect = e-132
 Identities = 138/201 (68%), Positives = 163/201 (81%), Gaps = 1/201 (0%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ HQIEAL +AGV+E+ILAV+YR E M   L    KKLGI + FS E EPLGTAGPLAL
Sbjct: 33  MIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLAL 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE- 119
           A+D+L    EPFFVLNSD+ICDFP  +L+ FHK HG EGTI+VT+VE+PSKYGVV+++E 
Sbjct: 93  ARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDEN 152

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
            G IE F+EKP+ FV NKINAG+YI NPSVLDRI ++PTSIEKEIFP M+ E QLYA EL
Sbjct: 153 TGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYEL 212

Query: 180 KGFWMDVGQPRDFLKGMCLYL 200
            GFWMD+GQP+DFLKGM LYL
Sbjct: 213 PGFWMDIGQPKDFLKGMSLYL 233

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  243 bits (622), Expect = 8e-78
 Identities = 114/333 (34%), Positives = 176/333 (52%), Gaps = 20/333 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ++ + +EAL  AGV E++L V Y  EQ+E+    + + LG+ + +  E EPLGTAG L  
Sbjct: 34  LIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFG-DGEGLGVRITYVVEKEPLGTAGALKN 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVV-LYNE 119
           A D+L    + F VLN D++ D    +L+ FHK  G   TI +T+V +PS++GVV   + 
Sbjct: 93  ALDLLGG--DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDG 150

Query: 120 HGCIESFIEKP--QEFVSNKINAGMYIFNPSVLDRIE-IKPTSIEKEIFP-LMSKEKQLY 175
            G +  F EKP  +E  SN INAG+YIF+P V D IE  +    E+E+ P L +K + +Y
Sbjct: 151 DGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVY 210

Query: 176 AMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRI 235
               +G+W+D+G P D L+   L L    +     ++E   I+ +  +     IGPG +I
Sbjct: 211 GYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKI 270

Query: 236 G------PNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289
           G      P   IG GV I  GV IK S I+ + ++   S++   IIG  C +G       
Sbjct: 271 GPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIG------A 324

Query: 290 ITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322
             ++G+ +IG    +   V +   +V+    I 
Sbjct: 325 SLIIGDVVIGINSEILPGVVVGPGSVVESGEIE 357

Length = 358

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score =  191 bits (488), Expect = 2e-59
 Identities = 71/190 (37%), Positives = 112/190 (58%), Gaps = 6/190 (3%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +L + IE L  AG+ E+IL V Y  EQ+E+    +  K G+++ +  + EPLGTAG +  
Sbjct: 31  ILEYIIERLARAGIDEIILVVGYLGEQIEEYFG-DGSKFGVNIEYVVQEEPLGTAGAVRN 89

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           A+D L    + F V+N D++ D    +L+ FH+  G + TI V +VE+PS+YGVV  ++ 
Sbjct: 90  AEDFLGD--DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD 147

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE---IKPTSIEKEIFPLMSKEKQLYAM 177
           G +  F+EKP    SN  NAG+YIF P +LD I     +      +  PL+ +E ++Y  
Sbjct: 148 GRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGY 207

Query: 178 ELKGFWMDVG 187
            + G+W+D+G
Sbjct: 208 PVDGYWLDIG 217

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score =  157 bits (400), Expect = 2e-44
 Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 34/306 (11%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +L H IEAL +AG+ + +  V Y  E++ +    +  + G+ + +  + E LGTA  L  
Sbjct: 33  LLEHIIEALRDAGIDDFVFVVGYGKEKVREYFG-DGSRGGVPIEYVVQEEQLGTADALGS 91

Query: 61  AKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE 119
           AK+ ++   + F VLN D++ D    + L+           I V +V++PS YGVV   +
Sbjct: 92  AKEYVD---DEFLVLNGDVLLDSDLLERLIRAEAP-----AIAVVEVDDPSDYGVVET-D 142

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI--EKEI---FPLMSKEKQL 174
            G +   +EKP+   SN INAG+Y+F+P + + +E    S   E E+     L+  E ++
Sbjct: 143 GGRVTGIVEKPENPPSNLINAGIYLFSPEIFELLEKTKLSPRGEYELTDALQLLIDEGKV 202

Query: 175 YAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTAT------ 228
            A+EL GFW+DVG+P D L      L++L  +    ++E   I G V++   A       
Sbjct: 203 KAVELDGFWLDVGRPWDLLDANEALLDNLEPRIEGTVEENVTIKGPVVIGEGAVIRSGTY 262

Query: 229 ------IGPGCRIGPN------VTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
                 IG  C IGPN        IG  V I   V IK S I+    +   S++   +IG
Sbjct: 263 IEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSIIMEGTKIPHLSYVGDSVIG 322

Query: 277 WKCVVG 282
             C  G
Sbjct: 323 ENCNFG 328

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score =  149 bits (378), Expect = 9e-43
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 13/215 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+RE I+  +     +  E   +  K G+ + ++ + EP GTA  +AL
Sbjct: 33  MIQYTLSRLMNAGIREPIVICTQEHRFLVAEQLGDGSKFGLQVTYALQPEPRGTAPAVAL 92

Query: 61  AKDILNKSQ-EPFFVLNSDIICDFPFKDLVSFHKNHGKEG--TIVVTQVEEPSKYGVVLY 117
           A D L     E   VL  D I    F++ V   +    +G  T  +  VE+P+ YGV+ +
Sbjct: 93  AADFLGDDDPELVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEF 152

Query: 118 NEHGCIESFIEKPQEFV-SNKINAGMYIFNPSVLDRI--EIKP-----TSIEKEIFPLMS 169
           +E+G +  F+EKP     SN  + G+Y FN  V   +   +K        I   I   + 
Sbjct: 153 DENGRVIRFVEKPDLPKASNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDAIPAALE 212

Query: 170 KEKQLYAMELKGF--WMDVGQPRDFLKGMCLYLNS 202
                 A   +G+  W DVG      +     L  
Sbjct: 213 DGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLTG 247

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score =  145 bits (368), Expect = 1e-41
 Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 3/191 (1%)

Query: 2   LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALA 61
           L + +E L   G+  ++L+V Y AEQ+E+    +  + GI + +  E EPLGT G +  A
Sbjct: 32  LEYLLEYLARQGISRIVLSVGYLAEQIEEYF-GDGYRGGIRIYYVIEPEPLGTGGAIKNA 90

Query: 62  KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
              L +  + F VLN D   D     L++  +  G + T+ + +V + S+YG V  +  G
Sbjct: 91  LPKLPE--DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDG 148

Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKG 181
            + +F+EK        IN G+Y+    +L  I     S+E ++ P + K  +LY  E+ G
Sbjct: 149 RVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDG 208

Query: 182 FWMDVGQPRDF 192
           +++D+G P D+
Sbjct: 209 YFIDIGIPEDY 219

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score =  141 bits (357), Expect = 5e-40
 Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 16/199 (8%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +L   I+  +  G R   ++V+Y AE +ED    +  K G+++ +  E++PLGTAG L+L
Sbjct: 31  ILETIIDRFIAQGFRNFYISVNYLAEMIEDYFG-DGSKFGVNISYVREDKPLGTAGALSL 89

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
                 K  +PF V+N DI+ +  ++ L+ FHK +  + T+ V + E    YGVV     
Sbjct: 90  LP---EKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG- 145

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK-----PTSIEKEIFPLMSKEKQLY 175
           G I S  EKP    S  +NAG+Y+  P VLD I        P  IEK    L+ + K++ 
Sbjct: 146 GRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEK----LIKEGKKVG 199

Query: 176 AMELKGFWMDVGQPRDFLK 194
              +  +W+D+G+P D+ K
Sbjct: 200 VFPIHEYWLDIGRPEDYEK 218

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score =  133 bits (337), Expect = 1e-36
 Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 31/229 (13%)

Query: 1   MLLHQIEALVE-AGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLA 59
           M+ H IEA  +   ++EV+L   Y      D ++   ++  + + +  E +PLGTAG L 
Sbjct: 33  MIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLY 92

Query: 60  LAKD-ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVL 116
             +D IL  +   FFVLN+D+ CDFP ++L+ FHK HG  GTI+ T+   E+ S YG ++
Sbjct: 93  HFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIV 152

Query: 117 YNEH-GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI-------------------- 155
            +   G +  ++EKP+ FVS+ IN G+Y+F+P + D I+                     
Sbjct: 153 EDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGR 212

Query: 156 -KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSL 203
            +   +E+++   ++   +LY  +   FW  +        G  +Y N L
Sbjct: 213 AEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTA-----GSAIYANRL 256

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score =  119 bits (302), Expect = 5e-32
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHE-NEPLGTAGPLA 59
           ++ H ++ L  AG+R +++   + A+Q+E  L     + G+ +  S E +E L T G + 
Sbjct: 32  LIDHALDRLAAAGIRRIVVNTHHLADQIEAHL--GDSRFGLRITISDEPDELLETGGGIK 89

Query: 60  LAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSK--YGVVLY 117
            A  +L    EPF V+N DI+ D     L+  H        +++  V  P     G    
Sbjct: 90  KALPLLG--DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSL 147

Query: 118 NEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAM 177
           +  G +          V+     G+ I +P +   I     S+   ++       +L+ +
Sbjct: 148 DADGRLRR---GGGGAVAPFTFTGIQILSPELFAGIPPGKFSL-NPLWDRAIAAGRLFGL 203

Query: 178 ELKGFWMDVGQPRDFL 193
              G W DVG P   L
Sbjct: 204 VYDGLWFDVGTPERLL 219

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score =  115 bits (291), Expect = 7e-30
 Identities = 64/249 (25%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +E L+ AG+R++++ V    +    EL  +    G+ + ++ + EP G A  + +
Sbjct: 33  MIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLI 92

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           A+D +    + F +   D I      +L+      G   TI++ +V++PS+YGVV ++E 
Sbjct: 93  AEDFVG--DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED 150

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFP----LMSKEKQL 174
           G +    EKP+E  SN    G+Y ++PSV + I+ IKP++  E EI       + K   +
Sbjct: 151 GKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLV 210

Query: 175 YAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCR 234
            A+ ++G+W+D G P   L+    ++ ++ +++   +   + I  N  +D    IG   +
Sbjct: 211 VAILIRGWWLDTGTPESLLEANN-FVRTVSKRQGFKIACPEEIAWNGWIDGPGLIGLASQ 269

Query: 235 IGPNVTIGP 243
           +  +   G 
Sbjct: 270 LEKS-GYGQ 277

Length = 286

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score =  116 bits (292), Expect = 2e-29
 Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 28/316 (8%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +L + IE L EAG+ ++ + V     +   E+  E ++ G  + +  + EPLG A  +  
Sbjct: 32  ILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYT 91

Query: 61  AKDILNKSQEPFFV-LNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE 119
           A+D L    + F V L  ++I D   + + SF +    +  I++T+V +P+ +GV +  +
Sbjct: 92  ARDFL--GDDDFVVYLGDNLIQDGISRFVKSFEEKD-YDALILLTKVRDPTAFGVAVLED 148

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPT-----SIEKEIFPLMSKEKQ 173
              I   +EKP+E  SN    G+Y+F P + + I+ IKP+      I   I  L+ K  +
Sbjct: 149 GKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYK 208

Query: 174 LYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGC 233
           +   ++ G+W D G+P D L    L L+ + ++  + + +   I G V+V   A I    
Sbjct: 209 VGGSKVTGWWKDTGKPEDLLDANRLILDEV-EREVQGVDDESKIRGRVVVGEGAKIVNSV 267

Query: 234 RIGPNVTIGPGVVIEGG-----VCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRME 288
             GP   IG   +IE         I    ++RDA V+    L+  +I      G   R+ 
Sbjct: 268 IRGP-AVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVI-----EGVQARIV 321

Query: 289 NITVLGECIIGWKCVV 304
                 + +IG K  +
Sbjct: 322 ------DSVIGKKVRI 331

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score =  111 bits (279), Expect = 1e-28
 Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 10/206 (4%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ++ + IE L EAG+ ++ + V    E++++ L  +  + G+ + +  + EPLG A  +  
Sbjct: 33  IIQYAIEDLREAGIEDIGIVVGPTGEEIKEALG-DGSRFGVRITYILQEEPLGLAHAVLA 91

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           A+D L    EPF V   D +       LV        + +I++ +VE+P ++GV + ++ 
Sbjct: 92  ARDFLG--DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD- 148

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKPTS-----IEKEIFPLMSKEKQL 174
           G I   +EKP+E  SN    G+Y F P++ D I  +KP+      I   I  L+ + +++
Sbjct: 149 GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRV 208

Query: 175 YAMELKGFWMDVGQPRDFLKGMCLYL 200
               + G+W D G P D L+   L L
Sbjct: 209 GYSIVTGWWKDTGTPEDLLEANRLLL 234

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score =  103 bits (257), Expect = 2e-27
 Identities = 38/74 (51%), Positives = 53/74 (71%)

Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
           L+DP+A IG   +IGPNV IGP V I  GV ++R  IL ++ V+ HSW++  I+GW   V
Sbjct: 1   LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTV 60

Query: 282 GQWVRMENITVLGE 295
           G+W R+EN+TVLG+
Sbjct: 61  GRWTRLENVTVLGD 74

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score =  103 bits (260), Expect = 1e-24
 Identities = 81/362 (22%), Positives = 145/362 (40%), Gaps = 62/362 (17%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H I+A    G +++ +   + AEQ+   L          + +  + E LGT   +  
Sbjct: 30  MLEHVIDAARALGPQKIHVVYGHGAEQVRKAL------ANRDVNWVLQAEQLGTGHAVLQ 83

Query: 61  AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
           A   L        VL  D+    P       + L+  H+ +G   T++  ++ +P+ YG 
Sbjct: 84  ALPFL-PDDGDVLVLYGDV----PLISAETLERLLEAHRQNG--ITLLTAKLPDPTGYGR 136

Query: 115 VLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
           ++    G + + +E      ++    +IN G+Y+F+ + L R   ++   + + E     
Sbjct: 137 IIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTD 196

Query: 164 IFPLMSKEKQ-------LYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEG 214
           +  L   + +         + E+ G    + + Q    L+         R  + KLL  G
Sbjct: 197 VIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQ--------RRIAK-KLLLAG 247

Query: 215 DGIV--GNVLVDPTATIG------PGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKS 266
             +       +  T  IG      P   +   V IG  VVI  G  IK S I  + ++K+
Sbjct: 248 VTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKA 307

Query: 267 HSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDEL 326
           +S LEG  IG  C VG + R+   +VLG         +G +V  +N   +G+        
Sbjct: 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGA-----GVHIGNFVETKN-ARIGKGSKAGHLS 361

Query: 327 YV 328
           Y+
Sbjct: 362 YL 363

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score =  100 bits (251), Expect = 3e-23
 Identities = 79/351 (22%), Positives = 151/351 (43%), Gaps = 51/351 (14%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H I+A    G  ++++ V + AEQ+ + L          + F  + E LGT   +  
Sbjct: 32  MLEHVIDAARALGPDDIVVVVGHGAEQVREALAERDD-----VEFVLQEEQLGTGHAVLQ 86

Query: 61  AKDILNKSQEPF-FVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
           A   L    +    VL  D+  I     ++L++ H  HG   T++  ++++P+ YG ++ 
Sbjct: 87  ALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVR 146

Query: 118 NEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDR--IEIKPTSIEKE-----IFP 166
           + +G + + +E+     +E    +IN G+Y F+ + L R   ++   + + E     +  
Sbjct: 147 DGNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIA 206

Query: 167 LMSKE-KQLYAMELKGFWMDVG--------QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
           +   E +++ A+ +      +G        +    ++         R+   KL+  G  +
Sbjct: 207 IARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQ---------RRIAEKLMLAGVTL 257

Query: 218 V--GNVLVDPTATIGPGCRIGPNVT------IGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
           +      +     IG    I PNV       IG  VVI  G  IK S I  +A++K++S 
Sbjct: 258 IDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSV 317

Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
           +EG  +G    VG + R+    VLG         +G +V ++    +G+  
Sbjct: 318 IEGSTVGEGATVGPFARLRPGAVLGA-----DVHIGNFVEVKK-ATIGKGS 362

Length = 460

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 47/295 (15%)

Query: 63  DILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEH 120
            I     E   +L+ D I    + D++ FH   G + T+ V +V  EE S++GV+  +E+
Sbjct: 113 IIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN 172

Query: 121 GCIESFIEKPQE--FVSNKINAGMYIFNPSVL-------DRIEIKPTSIEKEIFPLMSKE 171
           G I  F+EKP +    ++  + G+YIFN  +L        +         K+I P + + 
Sbjct: 173 GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLER 232

Query: 172 KQLYAMELKGFWMDVG-------------QPRDFL----KGMCLYLNSLRQKRPKLLKEG 214
            ++YA E  G+W DVG              P+  L    +   +Y  +      K +   
Sbjct: 233 GKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVN-- 290

Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
           D  V N LV        GC I   V    +  GV I  G  I+ S I+ D  +   + L 
Sbjct: 291 DSEVSNSLV------AGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR 344

Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDEL 326
             II    V+G     E + + G+     +    ++   E I V+ + ++++ ++
Sbjct: 345 RAIIDKNVVIG-----EGVVIGGDKPEEDR---KRFRSEEGIVVVPKGMVIKLDI 391

Length = 393

>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

 Score = 91.9 bits (229), Expect = 2e-21
 Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 11/157 (7%)

Query: 54  TAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYG 113
           T G L   +  L    E F +   D + D     L+ FH++HGK  T  VT V  P ++G
Sbjct: 104 TGGRLKRVRRYL-GDDETFMLTYGDGVSDVNINALIEFHRSHGKLAT--VTAVHPPGRFG 160

Query: 114 VVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
            +  ++ G + SF EKPQ      IN G ++  P V D I+   T  E+E    ++K+ +
Sbjct: 161 ELDLDDDGQVTSFTEKPQG-DGGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGE 219

Query: 174 LYAMELKGFWMDVGQPRDFLKGMCLYLNSL--RQKRP 208
           L A +  GFW    Q  D L+     L  L    K P
Sbjct: 220 LMAYKHTGFW----QCMDTLRDK-QTLEELWNSGKAP 251

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 89.2 bits (222), Expect = 8e-20
 Identities = 59/258 (22%), Positives = 98/258 (37%), Gaps = 46/258 (17%)

Query: 70  EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFI 127
           E   +L+ D I    ++ ++ +H   G + TI    V  +E S++GV+  +E G I  F 
Sbjct: 112 EYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFE 171

Query: 128 EKPQEFVSNKINA-------GMYIFNPSVLDRIEIKPTSIE-------KEIFPLMSKEKQ 173
           EKP    S            G+YIF+  VL  +  +            K+I P   +E  
Sbjct: 172 EKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGS 231

Query: 174 LYAMELKGFWMDVG--------------QPRDF----LKGMCLYLNSLRQKRPKLLKEGD 215
           + A    G+W DVG                  F     K   +Y  +      K +    
Sbjct: 232 VQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWP-IYTYNEFLPPAKFVDSDA 290

Query: 216 GIVGNVLVDPTATIGPGCRI-GPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
            +V ++       +  GC I G  V+   +G  V I  G  ++ S I+ D  +   + + 
Sbjct: 291 QVVDSL-------VSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR 343

Query: 272 GCIIGWKCVVGQWVRMEN 289
             II     +G+ V + N
Sbjct: 344 NAIIDKNVRIGEGVVIGN 361

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 87.2 bits (217), Expect = 5e-19
 Identities = 77/270 (28%), Positives = 117/270 (43%), Gaps = 49/270 (18%)

Query: 74  VLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQ 131
           +L+ D I    +  ++ +HK    + TI V +V  EE S++G++  +E+  I  F EKP+
Sbjct: 122 ILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEKPK 181

Query: 132 EFVSNKINAGMYIFNPSVLDRI----EIKPTSIE---KEIFPLMSKE-KQLYAMELKGFW 183
              SN  + G+YIFN   L       E  P S     K + PL  +E ++LYA   KG+W
Sbjct: 182 NPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241

Query: 184 MDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDG---------IVGNVLVDPTATIGP--- 231
            DVG            + SL +   +LL+  +          I       P   I     
Sbjct: 242 KDVGT-----------IESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAK 290

Query: 232 --------GCRIGPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
                   GC +   V    +  GV +  G  +K S I+  A +  +  +E  IIG   V
Sbjct: 291 VKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAV 350

Query: 281 VGQWVRM----ENITVLGE-CIIGWKCVVG 305
           +G  V +    E ITV+GE  +IG   V+G
Sbjct: 351 IGDGVIIGGGKEVITVIGENEVIGVGTVIG 380

Length = 380

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 10/141 (7%)

Query: 54  TAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYG 113
           T G L   ++ L+   E F     D + D   K L++FH+ HGK+ T  VT V+ P ++G
Sbjct: 105 TGGRLKRVREYLD--DEAFCFTYGDGVADIDIKALIAFHRKHGKKAT--VTAVQPPGRFG 160

Query: 114 VVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
             L  E   + SF EKP       IN G ++ NPSVLD I+   T  E+E    +++  +
Sbjct: 161 A-LDLEGEQVTSFQEKPLG-DGGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGE 218

Query: 174 LYAMELKGFWMDVGQPRDFLK 194
           L A E  GFW    QP D L+
Sbjct: 219 LSAYEHSGFW----QPMDTLR 235

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 78.9 bits (194), Expect = 5e-16
 Identities = 104/427 (24%), Positives = 180/427 (42%), Gaps = 77/427 (18%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+   ++A  + G R++++   + AEQ+E  L       G  + F+ + + LGT      
Sbjct: 37  MVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ------GSGVAFARQEQQLGTGDAFLS 90

Query: 61  AKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
               L +      VL  D     P   + LV+ H+  G   TI+  ++ + + YG ++  
Sbjct: 91  GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRG 150

Query: 119 EHGCIESFIEK----PQEFVSNKINAGMYIFN---PSVLDRIEIKPTSIEKEIFPLMSKE 171
             G +E  +E+      E    + N+G+Y+F+   P +  RI     + E  +  L+   
Sbjct: 151 ADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLY 210

Query: 172 KQLYAMELKGFWMDVGQPRDFL-----KGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDP- 225
           +   A +++ F   +  P + L      G+     +LR++    + E     G  L DP 
Sbjct: 211 RAGGA-QVRAF--KLSDPDEVLGANDRAGLAQLEATLRRR----INEAHMKAGVTLQDPG 263

Query: 226 TATIGPGCRIGPNVTIGPGVVIEG------GVCIKRSTILRD------AIVKSHSWLEGC 273
           T  I     +G +VTI PGV++ G      GV I   +++ D      A++K HS LEG 
Sbjct: 264 TILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGA 323

Query: 274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN-----------ITVLGEDVIV 322
            +G    VG + R+   TVLGE +      +G +V  +N           +  LG DV +
Sbjct: 324 EVGAGSDVGPFARLRPGTVLGEGV-----HIGNFVETKNARLDAGVKAGHLAYLG-DVTI 377

Query: 323 QDELYVNGGQVLP-------HKS-------IGSSLHMLGEDVIVQDELYVNGGQVLPHKS 368
             E  V  G ++        H+S       IGS+  ++   V V D  ++  G      +
Sbjct: 378 GAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRV-VGDAAFIAAGS-----A 431

Query: 369 IGSSVPE 375
           +   VPE
Sbjct: 432 VHDDVPE 438

Length = 481

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 47/229 (20%)

Query: 6   IEALVEAGVREVILAVSYRAEQMED------EL--------------TVETKKLGISLVF 45
           +E  V AG+ ++I+        +ED      EL               V       ++ +
Sbjct: 38  VEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHY 97

Query: 46  SHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICD---FPFKDLVSFHKNHGKEGTIV 102
             + EPLG    +  AK  +    EPF VL  D + D      K L+  ++  G    I 
Sbjct: 98  VRQKEPLGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIA 154

Query: 103 VTQV--EEPSKYGVV--------LYNEHGCIESFIEKP--QEFVSNKINAGMYIFNPSVL 150
           V +V  E+ SKYG+V        ++     ++  +EKP  +E  SN    G Y+  P + 
Sbjct: 155 VEEVPPEDVSKYGIVKGEKIDGDVFK----VKGLVEKPKPEEAPSNLAIVGRYVLTPDIF 210

Query: 151 DRIEIKPTSIEKEI-----FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
           D +E        EI        + +E+ +YA   +G   D G    +LK
Sbjct: 211 DILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLK 259

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 13/156 (8%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ H ++++ +AG+ +++  V + AE++++ L   ++       F+ + E LGT   +  
Sbjct: 32  MVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDRSE-------FALQEEQLGTGHAVMQ 84

Query: 61  AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
           A++ L   +    V+  D  +I     K+L+ FH+ H    TI+    E P+ YG ++ N
Sbjct: 85  AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRN 144

Query: 119 EHGCIESFIE----KPQEFVSNKINAGMYIFNPSVL 150
           E+G +E  +E      +E    +IN G Y F+   L
Sbjct: 145 ENGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKAL 180

Length = 458

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 12/158 (7%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H ++A    G   +++ V + AEQ++  L         ++ F  + E LGT   +  
Sbjct: 28  MLEHVLDAARALGPDRIVVVVGHGAEQVKKALA------NPNVEFVLQEEQLGTGHAVKQ 81

Query: 61  AKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
           A   L   +    VL  D+  I     + L+  H+  G + T++  ++E+P+ YG ++ +
Sbjct: 82  ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRD 141

Query: 119 EHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDR 152
            +G +   +E      +E    ++NAG+Y F+   L  
Sbjct: 142 GNGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFE 179

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 70/330 (21%), Positives = 127/330 (38%), Gaps = 76/330 (23%)

Query: 18  ILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77
           ++ V ++AE++E  L          L F  +   LGT   +     +L   +    VLN 
Sbjct: 48  LVIVGHQAEEVEQSLAHLPG-----LEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNG 102

Query: 78  DIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEK-- 129
           D+    P       + L++ H++   + T++  ++  P  YG V  + +  +E  +E   
Sbjct: 103 DV----PLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRD 158

Query: 130 --PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEIF---------PLMSKE----- 171
             P +  +N+INAG+Y FN   L  +  ++   + +KE +         P+M+ E     
Sbjct: 159 CTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPVMAVEVEDYQ 218

Query: 172 --------KQLYAME------LKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
                   KQL   E      +K  WM  G              +        + E   +
Sbjct: 219 EINGINDRKQLAQCEEILQNRIKEKWMLAGV-------------TFIDPASCTISETVEL 265

Query: 218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEG-----GVCIKRSTILRDAIVKSHSWL-- 270
             +V+++P   +     IG    IGPG +IE       V +  S +  D+ +     +  
Sbjct: 266 GPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVV-SDSQIGDGVKIGP 324

Query: 271 -----EGCIIGWKCVVGQWVRMENITVLGE 295
                    IG  C +G +V ++  + LGE
Sbjct: 325 YAHLRPEAQIGSNCRIGNFVEIKK-SQLGE 353

Length = 450

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLE-G 272
            GI    ++DPTATIG    IGPNV IG GVVI   V I   + I  +  +   + +   
Sbjct: 100 AGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPN 159

Query: 273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI--TVLGEDV 320
             I    V+G  V + +  V+G    G+      WV++  I   ++G+DV
Sbjct: 160 VTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDV 209

Length = 338

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 88/363 (24%), Positives = 155/363 (42%), Gaps = 45/363 (12%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+   + A  EAG   ++L V ++AE++ +    +       + F+ + E LGT   +A 
Sbjct: 33  MVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDGD-----VSFALQEEQLGTGHAVAC 87

Query: 61  AKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
           A   L+       +L  D+  +     + +++ H+  G   T++  ++E P  YG ++ +
Sbjct: 88  AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRD 147

Query: 119 EHGCIESFIEK----PQEFVSNKINAGMYIFNPSVL-DRI-EIKPTSIEKEIFPLMSKEK 172
             G +   +E+    P+E    ++N+G+Y    + L D I  +   + + E + L     
Sbjct: 148 ADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY-LTDIVA 206

Query: 173 QLYAMELKGFWMDVGQPRDFL-----KGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTA 227
              A  L+     V  P + +       +      LR++  + L     + G  L+DP  
Sbjct: 207 MAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELM----LAGVTLIDPET 262

Query: 228 T-IGPGCRIGPNVTIGPGVVIEG------------GVCIKRSTILRDAIVKSHSWLEGCI 274
           T I  G  IG + TI PGV I G            GV IK   I  D  VK+ S LE  +
Sbjct: 263 TYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV 322

Query: 275 IGWKCVVGQWVRMENITVLGECI-IG-----WKCVVGQWVRMENITVLGEDVIVQDELYV 328
           +G    +G    +   T L   + IG      K V+G+  +  ++T LG+  I ++   V
Sbjct: 323 VGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRN---V 379

Query: 329 NGG 331
           N G
Sbjct: 380 NIG 382

Length = 459

>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 14/208 (6%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMED--ELTVETKKLGISLVFSHENEPLGTAGPL 58
           M+ + +  L+ AG+RE IL +S   E +    EL  +   LGI + ++ + +P G A   
Sbjct: 33  MIYYPLSTLMLAGIRE-ILIISTP-EDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAF 90

Query: 59  ALAKDILNKSQEPF-FVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
            + ++ +    +P   +L  +I        ++       +  T+   +V +P +YGVV +
Sbjct: 91  IIGEEFIGD--DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEF 148

Query: 118 NEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPLMS---KEK 172
           +E+G + S  EKP++  SN    G+Y ++  V +  + +KP++  E EI  + +   ++ 
Sbjct: 149 DENGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKG 208

Query: 173 QLYA--MELKGFWMDVGQPRDFLKGMCL 198
           +L    +     W+D G     L+    
Sbjct: 209 KLSVELLGRGFAWLDTGTHESLLEASNF 236

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
           L+  +  IG    I  +V IG  V I  GV I  S ++ +  + ++S +   IIG   V+
Sbjct: 1   LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59

Query: 282 GQWVRMENITVLGE 295
           G+ VR+ N+ ++G+
Sbjct: 60  GENVRVVNLCIIGD 73

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 79/349 (22%), Positives = 129/349 (36%), Gaps = 49/349 (14%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML     AL       V   V +RA+       V          F  + + LGT   L  
Sbjct: 35  MLRFVYRALRPLFGDNVWTVVGHRADM------VRAAFPDEDARFVLQEQQLGTGHALQC 88

Query: 61  AKDILNKSQ-EPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
           A   L  +  +   V+N D  ++      D +   +  G +   +   + +P  YG V+ 
Sbjct: 89  AWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLK--EAAGADLAFMTLTLPDPGAYGRVV- 145

Query: 118 NEHGCIESFIE----KPQEF--VSNKINAGMYIFN----PSVLDRIEIKPTSIE---KEI 164
             +G + + +E            + ++NAG+Y        S+L R+     S E    ++
Sbjct: 146 RRNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDL 205

Query: 165 FPLMSKEKQ----LYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIV-- 218
             L   E      +   E     + V  P + ++   L    LR +  +   E   ++  
Sbjct: 206 VGLAVAEGMNVLGVNCGEDPNL-LGVNTPAELVRSEEL----LRARIVEKHLESGVLIHA 260

Query: 219 -GNVLVDPTATIGPG------CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
             +V + P ATI PG      C I     I  G VI     ++ + +   A + S S LE
Sbjct: 261 PESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLE 320

Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
           G  +G  C VG + R+    VL E        VG +V M+   VLG+  
Sbjct: 321 GAEVGDGCSVGPYARLRPGAVLEE-----GARVGNFVEMKK-AVLGKGA 363

Length = 456

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +L  QIE L EAG+ ++++   Y+ EQ+E+ L    K   I  V++ +         L L
Sbjct: 31  LLERQIETLKEAGIDDIVIVTGYKKEQIEELL---KKYPNIKFVYNPDYAETNNIYSLYL 87

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           A+D L+   E F +L  D++ D     ++    +   +  I+V +  +  +   V   + 
Sbjct: 88  ARDFLD---EDFLLLEGDVVFD---PSILERLLSSPADNAILVDKKTKEWEDEYVKDLDD 141

Query: 121 GCIESFIEKPQEFVSNKINA---GMYIFNPSVLDRI 153
             +   I    + +   I     G+  F+P   DR+
Sbjct: 142 AGVLLGIISKAKNLEE-IQGEYVGISKFSPEDADRL 176

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 64.0 bits (157), Expect = 5e-12
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
           I G+V +     I PG  +     IG   VI     IK STI    ++K+ S +EG +IG
Sbjct: 12  IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIG 71

Query: 277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
               VG +  +   TVLGE        +G +V ++  + +GE
Sbjct: 72  NGATVGPFAHLRPGTVLGE-----GVHIGNFVEIKK-STIGE 107

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 6   IEALVEAGVREVILAVSYRAEQMED------EL---------TVETKKL-----GISLVF 45
           +E  V AG+ E+++        +ED      EL             +++      +++ F
Sbjct: 42  VEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISF 101

Query: 46  SHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPF---KDLVSFHKNHGKEGTIV 102
             + EPLG    +  AK  +    EPF VL  D + D      K ++  ++  G    I 
Sbjct: 102 VRQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIG 158

Query: 103 VTQV--EEPSKYGVV-----LYNEHGCIESFIEKPQ--EFVSNKINAGMYIFNPSVLDRI 153
           V +V  E+ SKYGV+     +      ++  +EKP+  E  SN    G Y+  P + D +
Sbjct: 159 VEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDIL 218

Query: 154 EIKPTSIEKEI-----FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
           E        EI        + K++ + A   +G   D G    ++K
Sbjct: 219 EETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIK 264

Length = 291

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 63.2 bits (155), Expect = 4e-11
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 30/118 (25%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL-EGCIIGWKCVV 281
           + P+A I P  +IG  V+IGP  VI  GV I         ++ + + + +G  IG  C +
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGV-----VIGAGAVIGDGVKIGADCRL 157

Query: 282 GQWVRMENITVLGECIIGWKCVV-----------------GQWVRMENI--TVLGEDV 320
                  N+T+     IG + ++                 G WV++  +   ++G+DV
Sbjct: 158 HA-----NVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDV 210

Length = 343

>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 39/225 (17%)

Query: 6   IEALVEAGVREVILAVSYRAEQMED------ELTVETKKLG--------------ISLVF 45
           +E  VEAG+ ++++        +ED      EL  + +K                 ++ +
Sbjct: 38  VEEAVEAGIEDILIVTGRGKRSIEDHFDTSYELEHQLEKTNKEELLKEVRSIIPLATIFY 97

Query: 46  SHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP---FKDLVSFHKNHGKEGTIV 102
             + E  G    +  A+  +    EPF V+  D IC       K ++  ++ +G    I 
Sbjct: 98  VRQKEQKGLGHAVLCAEPFV--GDEPFAVILGDDICVSEEPVLKQMIDLYEKYGCS-IIA 154

Query: 103 VTQV--EEPSKYGVV----LYNEHGCIESFIEKP--QEFVSNKINAGMYIFNPSVLDRIE 154
           V +V  EE SKYGV+    +      I+  +EKP  +E  SN    G Y+  P + + +E
Sbjct: 155 VEEVPKEEVSKYGVIDGEGVEEGVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELLE 214

Query: 155 IKPTSIEKEI-----FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
             P     EI        + K++++YA + KG   D G    ++K
Sbjct: 215 ETPPGKGGEIQLTDALRKLLKKERVYAYKFKGKRYDCGSKLGYIK 259

Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260

>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 45/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV ++++
Sbjct: 96  GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN 154

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP +  SN    G+Y ++  V++  + +KP++  E EI  +    M + +  
Sbjct: 155 GTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214

Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
            AM  +G+ W+D G  +  ++ 
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236

Length = 292

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL-EGC 273
           GI    +VDP+A IG G  IGPNV IG GV I   V I     I  D ++   S +    
Sbjct: 93  GIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNV 152

Query: 274 IIGWKCVVGQWVRMENITVLGECIIGW-KCVVGQWVRMENI--TVLGEDV 320
           +I  +  +G+ V + +  V+G    G+     G  V++  I   ++ +DV
Sbjct: 153 VIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDV 202

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 56.3 bits (137), Expect = 3e-09
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
           NV + P A IG G  IG  V IGPGVVI  GV I    ++       H       I   C
Sbjct: 7   NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVI-------HP---NVTIYEGC 56

Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENI--TVLGEDV 320
           ++G  V + +  V+G    G+    G WV++  +   ++G+DV
Sbjct: 57  IIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV 99

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287
            IG    I PNV  GPGV +  G           A++ + S LEG  +G    VG + R+
Sbjct: 270 VIGRDVVIEPNVVFGPGVTVASG-----------AVIHAFSHLEGAHVGEGAEVGPYARL 318

Query: 288 ENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIG 340
                LGE        VG +V ++N   LGE   V    Y+    +    +IG
Sbjct: 319 RPGAELGE-----GAKVGNFVEVKN-AKLGEGAKVNHLTYIGDATIGAGANIG 365

Length = 446

>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 39/130 (30%)

Query: 63  DILNKS-QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
           D + +S  E   +L+ D I +  +++++ FH   G + T+V                   
Sbjct: 104 DYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVY------------------ 145

Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVL-DRIE--IKPTSIE--KEIFPLMSKEKQLYA 176
                          K + G+YIF+  +L + +E      S +  K+I P M K+ ++YA
Sbjct: 146 ---------------KASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYA 190

Query: 177 MELKGFWMDV 186
            E  G+W D+
Sbjct: 191 YEFNGYWADI 200

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200

>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 65/288 (22%), Positives = 102/288 (35%), Gaps = 84/288 (29%)

Query: 85  FKDLVSFHKNHGKEGTIVVTQVEE--PSKYGVVLYNEHGCIESFIEKP--QEFVSNKI-- 138
           + D V  H+  G + TI    V+E   S +G++  ++ G I  F EKP   E  + ++  
Sbjct: 138 YMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDT 197

Query: 139 -----------------NAGMYIFNPSVLDRI--EIKPTSIE--KEIFPLMSKEK-QLYA 176
                            + G+Y+F   VL ++     PT+ +   EI P   KE   + A
Sbjct: 198 TVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA 257

Query: 177 MELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDG-------------------- 216
               G+W D+G  + F      Y  +L      L K+                       
Sbjct: 258 YLFDGYWEDIGTIKSF------YEANL-----ALTKQPPKFSFYDPDAPIYTSPRFLPPS 306

Query: 217 -IVGNVLVDPTATIGPGCR----------IGPNVTIGPGVVIEGGVCIKRSTILRDAIVK 265
            I    + D  + I  GC           +G    IG GV IE  V +       +  + 
Sbjct: 307 KIEDCRITD--SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIA 364

Query: 266 SHSWLEGCI-IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN 312
                EG + IG    +G     EN T +   II     +G+ V + N
Sbjct: 365 -SLLAEGKVPIG----IG-----EN-TKIRNAIIDKNARIGKNVVIIN 401

Length = 436

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 64/244 (26%)

Query: 85  FKDLVSFHKNHGKEGTI--VVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVS-----NK 137
            + +V FH   G   T+  +    EE S +GV+  +  G I  F+EKP +        ++
Sbjct: 133 PRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDE 192

Query: 138 INAGM--YIFNPSVL----DRIEIKPTSIE---KEIFPLMSKEKQLYAM----------- 177
             A M  Y+F    L     R      S      +I P + +  + Y             
Sbjct: 193 ALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGAT 252

Query: 178 -ELKGFWMDVG---------------QPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNV 221
              +G+W DVG                P        LY N   ++ P        I  + 
Sbjct: 253 ERDRGYWRDVGTIDAYYDAHMDLLSVHPV-----FNLY-N---REWP--------IYTSS 295

Query: 222 LVDPTATI---GPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWK 278
              P A     G       +  +  G +I G   ++ S +  + +V+S + +E  ++   
Sbjct: 296 PNLPPAKFVDGGGRVGSAQDSLVSAGSIISGAT-VRNSVLSPNVVVESGAEVEDSVLMDG 354

Query: 279 CVVG 282
             +G
Sbjct: 355 VRIG 358

Length = 407

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 26/134 (19%)

Query: 85  FKDLVSFHKNHGKEGTIVVTQVEE--PSKYGVVLYNEHGCIESFIEKPQE---------- 132
           ++  V  H+  G + T+ V  V+E   S +G++  ++ G I  F EKP+           
Sbjct: 132 YRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDT 191

Query: 133 --FVSNKINA---------GMYIFNPSVL-DRIEIKPTSIE--KEIFPLMSKEKQLYAME 178
                +   A         G+Y+F+  VL D +   P   +  KEI P   ++ ++ +  
Sbjct: 192 SRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYL 251

Query: 179 LKGFWMDVGQPRDF 192
             G+W D+G    F
Sbjct: 252 FDGYWEDIGTIEAF 265

Length = 429

>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 68/319 (21%), Positives = 136/319 (42%), Gaps = 34/319 (10%)

Query: 5   QIEALVEAGVREVILAVSYRAEQ-MEDELT------VETKKLGISLVFSHENEPLGTAGP 57
            +  +V AG+R V +    +  Q + D L       +  K+ G+ +   ++ + L   G 
Sbjct: 40  PLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGK 99

Query: 58  LALAK--DILNKSQEPFFV-LNSDIICDFPFKDLVSFHKNHGKEGTIV---VTQVEEPSK 111
              ++  + L +S   + V LNS ++C+   K ++ +H+  GK+ T+V   V   +    
Sbjct: 100 RYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEY 159

Query: 112 YGVVLYNEHGCIESF--IEKPQEFVSNKINAGMYIFNPSVLDRIEI--------KPTSIE 161
             ++ ++E G ++S      P+E    + N  + I+  S    IE+        K TS+E
Sbjct: 160 DTILRFDESGKVKSIGQNLNPEE----EENISLDIYIVSTDLLIELLYECIQRGKLTSLE 215

Query: 162 KEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK-EGDGIVGN 220
           + I   + +   + A E  G+  ++   + + K     L+   Q    L       I   
Sbjct: 216 ELIRENLKELN-INAYEYTGYLANINSVKSYYKANMDLLDP--QNFQSLFYSSQGPIYTK 272

Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
           V  +P        ++  N  +  G +IEG V  + S + R   V   + ++ CII  + V
Sbjct: 273 VKDEPPTYYAENSKV-ENSLVANGCIIEGKV--ENSILSRGVHVGKDALIKNCIIMQRTV 329

Query: 281 VGQWVRMENITVLGECIIG 299
           +G+   +EN+ +  + +I 
Sbjct: 330 IGEGAHLENVIIDKDVVIE 348

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 66/295 (22%), Positives = 119/295 (40%), Gaps = 52/295 (17%)

Query: 47  HENEPLGTAGPLALAKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVT 104
            + E LGTA  +  A+D +    +   +L  D+  I +   K L+  H   G + TI+V 
Sbjct: 68  LQEEQLGTAHAVMCARDFIEPG-DDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVA 126

Query: 105 QVEEPSKYGVVLYNE--HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSI 160
            +E+P+ YG ++ +   +  +E      +E    +IN G+Y+F+   L  +  +IK  + 
Sbjct: 127 DLEDPTGYGRIIRDGGKYRIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENA 186

Query: 161 EKE-----IFPLMSKEKQLYA---MELKGF--WMDVGQPRDFLKGMCLYLNSLRQKRPKL 210
           + E           K + +     +E+ G    + +      L+          +   +L
Sbjct: 187 KGEYYLTDAVNFAEKVRVVKTEDLLEITGVNTRIQLAWLEKQLR---------MRILEEL 237

Query: 211 LKEGDGIVGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
           ++ G  I     +DP  T I     IG +  I P   IEG     ++ I  D  +   + 
Sbjct: 238 MENGVTI-----LDPNTTYIHYDVEIGMDTIIYPMTFIEG-----KTRIGEDCEIGPMTR 287

Query: 270 LEGCIIGWKCVVGQWVRMENITVL-GEC---IIGWKCVVGQWVRMENITVLGEDV 320
           +  C IG            N+ ++  EC   +I     VG + R+   TVL + V
Sbjct: 288 IVDCEIG-----------NNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSV 331

Length = 448

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCV 280
           ++DP +T      I  +V IG   VIE GV IK  + I  D ++   S +    IG    
Sbjct: 254 IIDPESTY-----IDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVT 308

Query: 281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQD 324
           +         +V+ E  +G    VG +  +   +V+GE+V + +
Sbjct: 309 ITN-------SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGN 345

Length = 458

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTIL-RDAIVKSHSWL-EGCIIGWKC 279
           ++ PTA I P  ++G  V IGP  VI   V I   T +   A++   + + +   I    
Sbjct: 1   MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGA 60

Query: 280 VVGQWVRMENITVLGE---CIIGWKCVVGQWV------RMENITVLGED 319
           VVG     ++ T  GE     IG + V+ + V      +   +T +G D
Sbjct: 61  VVGDEP--QDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGND 107

Length = 255

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
           N LR+K  + L          L+ P+A + P   IG    I  G VI     I  + I+ 
Sbjct: 66  NKLRRKLAEKLLAAGYRFAT-LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVII- 123

Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVR-MENITVLGECIIGWKCVVGQWVR---MENITVL 316
                      G +IG  CV+G +V     + + G   IG    +G       ++ +T+ 
Sbjct: 124 --------NT-GAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG--AGATIIQGVTI- 171

Query: 317 GEDVIV 322
           G   I+
Sbjct: 172 GAGAII 177

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 44/189 (23%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-----KLGISLVFSHENEPLGTA 55
           ++ + +E L +AGV EV +     ++ + + L          K+ + ++ S   E  G A
Sbjct: 33  LIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDA 92

Query: 56  GPLALAKDILNKSQEPFFVLNSDIICDFPFKDLV----SFHKNHGKEGTIVVTQVEEP-- 109
             L L +DI    +  F +L+ D++ + P  +L+       KN     T+ V     P  
Sbjct: 93  --LRL-RDIRGLIRSDFLLLSCDLVSNIPLSELLEERRKKDKNA--IATLTVLLASPPVS 147

Query: 110 ------------------SKYGVVLYNEHGCIESFIEKPQ----------EFVSNKINAG 141
                             ++  ++L+ E    E      +             ++ ++  
Sbjct: 148 TEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCH 207

Query: 142 MYIFNPSVL 150
           +YI +P VL
Sbjct: 208 IYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
           N LR++  + LK   G     L+ P+A + P   IG    I  G VI   V I  + I+ 
Sbjct: 60  NKLRRRLVEKLKA-LGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIIN 118

Query: 261 -------DAIVKSHSWLE-GCIIGWKCVVGQ--WVRMENITVLGECIIGWKCVVG 305
                  D ++  +  +  G  +    V+G+  ++     T++    IG   VVG
Sbjct: 119 TGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGA-GATIIQGVTIGAGAVVG 172

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 47.4 bits (114), Expect = 4e-06
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWK 278
              + PTA + PG +IG NV IGP  VI   V I   T++      SH  ++G   IG  
Sbjct: 2   MAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVI-----GSHVVIDGHTTIGKN 56

Query: 279 CVVGQ 283
             +  
Sbjct: 57  NRIFP 61

Length = 262

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 18/73 (24%), Positives = 33/73 (45%)

Query: 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
           +++ G  I G V++     IGP   I     +G G V+   V +K S I+    V   ++
Sbjct: 25  IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNY 84

Query: 270 LEGCIIGWKCVVG 282
           +   ++G    +G
Sbjct: 85  VGDSVLGENVNLG 97

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L ++ +  P G A    +
Sbjct: 32  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFII 91

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            +D +        VL  +I       DL+          T+   QV +P +YGVV ++ +
Sbjct: 92  GEDFIG-GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN 150

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKPTSI-EKEIFPL--MSKEKQLYA 176
           G   S  EKP +  SN    G+Y ++  V++   ++KP++  E EI  L  +  E+   +
Sbjct: 151 GRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLS 210

Query: 177 MEL--KGF-WMDVG 187
           +EL  +G+ W+D G
Sbjct: 211 VELLGRGYAWLDTG 224

Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRD-AIVKSHSWL-EGCIIGWKCV 280
           + PTA + PG +IG NV IGP  VI   V I   T++    ++   + + +   I     
Sbjct: 2   IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61

Query: 281 VG 282
           +G
Sbjct: 62  IG 63

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWK 278
              + PTA I PG  IG +V IGP  +I   V I   T+L     KSH  +EG   IG  
Sbjct: 3   MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVL-----KSHVVVEGHTTIGRN 57

Query: 279 CVVGQ 283
             +  
Sbjct: 58  NRIFP 62

Length = 260

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 28/95 (29%)

Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVR------MENITVLG 294
           IG   VI     IK S                 +IG    +G  V       M+N+T+  
Sbjct: 2   IGESTVIGENAIIKNS-----------------VIGDNVRIGDGVTITNSILMDNVTIGA 44

Query: 295 EC-----IIGWKCVVGQWVRMENITVLGEDVIVQD 324
                  IIG   V+G+ VR+ N+ ++G+DV+V+D
Sbjct: 45  NSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 40.8 bits (97), Expect = 2e-05
 Identities = 18/30 (60%), Positives = 19/30 (63%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEG 249
           NVL+ P   IG G  IG NV IG GVVI G
Sbjct: 7   NVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 44.7 bits (107), Expect = 5e-05
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
            V++   A IG G +IG +  +   V I   V I    I+       HS   G +IG
Sbjct: 136 GVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVII-------HS---GAVIG 182

Length = 343

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLEGCIIGWK 278
           NV+++  A IG  C IG  V I PGVV+ GGV I + + I   A +     ++G  IG  
Sbjct: 120 NVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI-----IQGVTIGAG 174

Query: 279 CVVG 282
            ++G
Sbjct: 175 AIIG 178

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG 272
           + PTA I PG  IG NV IGP  ++  GV      I     +KSH  + G
Sbjct: 1   IHPTAIIEPGAEIGENVEIGPFCIVGPGV-----KIGDGVELKSHVVILG 45

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGI--SLVFSHENEPLGTAGPL 58
           M+   IE+L +      I     R E        E+ KL    + V   + E LG A  +
Sbjct: 31  MIEWVIESLAKIFDSRFIFIC--RDEHNTKFHLDESLKLLAPNATVVELDGETLGAACTV 88

Query: 59  ALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
            LA D+++ + +P  + N D I +      ++  +    +G ++      P ++  V  +
Sbjct: 89  LLAADLID-NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSSHP-RWSYVKLD 146

Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIF 145
           E+G +    EK  E +S+   AG+Y F
Sbjct: 147 ENGRVIETAEK--EPISDLATAGLYYF 171

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 33/119 (27%)

Query: 234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITV 292
            +   VTI   V I              AIV+S +++EG  IIG  C +G      N  +
Sbjct: 7   TVEEGVTIKGPVWIG-----------EGAIVRSGAYIEGPVIIGKGCEIGP-----NAYI 50

Query: 293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKS-IGSSLHMLGEDV 350
            G  ++G  CVVG  V ++N  ++            +G +V PH + +G S+  LGE+V
Sbjct: 51  RGYTVLGDGCVVGNSVEVKNSIIM------------DGTKV-PHLNYVGDSV--LGENV 94

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 25/103 (24%)

Query: 223 VDPTATIGPGCRIGPNVTIGPG---------VVIEGGV-----CIKRSTILRDAIVKSHS 268
           V PTA +     IG N  IGP          +VI  G      C+      +D +++ + 
Sbjct: 9   VHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENG 68

Query: 269 W------LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
                  L GC IG   +VG      N  V+   +IG + +VG
Sbjct: 69  HIGHGAILHGCTIGRNALVGM-----NAVVMDGAVIGEESIVG 106

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CII 275
           I   V + P A I     IG NV IGPG VI               I+  +  +    +I
Sbjct: 3   IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG---PNEKNPTIIGDNVEIGANAVI 59

Query: 276 GWKCVVGQWVRMENITVLG 294
                +G    +    V+ 
Sbjct: 60  HGGVKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK---KLGISLVFSHENEPLGTAGP 57
           M+ + ++ L +AG  +VI+ V    +              K  +  V    +E +GTA  
Sbjct: 33  MIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADS 92

Query: 58  LALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSK 111
           L   + I  K ++ F VL+ D+I D P  +LV  H++H    T+++      S+
Sbjct: 93  L---RHIRKKIKKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSE 143

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII---- 275
              V P+AT+    RIG  V+I PG V+ G V  +   I     +      +G +I    
Sbjct: 17  TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNI-----QDGVVIHADP 69

Query: 276 GWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335
           G+   +G  V + +  V+  C IG   ++G    + +  V+G+  IV     V  G+ +P
Sbjct: 70  GYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIP 129

Query: 336 HKSI 339
             S+
Sbjct: 130 GGSL 133

Length = 176

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 18/161 (11%)

Query: 211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSH--- 267
           L  G  I    ++     IG G  IGP+  I     I     I +  ++ D         
Sbjct: 14  LGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKG 73

Query: 268 --SWLE---GCIIGWKCVVGQWVRMENITVLG-ECI------IGWKCVVGQWVRMENITV 315
             S LE     +I     + +  +   +T +G + +      +   C +G  V + N  +
Sbjct: 74  EESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGAL 133

Query: 316 LGEDVIVQDELYVNGGQVLPHK--SIGSSLHMLGEDVIVQD 354
           L   V V D   +  G  L H+   IG+   M G   I +D
Sbjct: 134 LAGHVTVGDRAII-SGNCLVHQFCRIGALAMMAGGSRISKD 173

Length = 255

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 17/79 (21%)

Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287
            IG  C+IG NV I              S I  D  ++    +   I+    V+G     
Sbjct: 18  VIGRNCKIGKNVVI------------DNSYIWDDVTIEDGCTIHHSIVADGAVIG----- 60

Query: 288 ENITVLGECIIGWKCVVGQ 306
           +  T+    +I +  V+G 
Sbjct: 61  KGCTIPPGSLISFGVVIGD 79

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 42/291 (14%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML + ++        +V + + ++ E++++ +      +        EN P GT G L  
Sbjct: 32  MLFYILKEAFAIS-DDVHVVLHHQKERIKEAVLEYFPGVIF-HTQDLENYP-GTGGAL-- 86

Query: 61  AKDILNKSQEPFFVLNSDIICDFPF---KDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
              I  K +    +LN D+    P     +L    +N      + V  + +P  YG V+ 
Sbjct: 87  -MGIEPKHER-VLILNGDM----PLVEKDELEKLLENDADI-VMSVFHLADPKGYGRVV- 138

Query: 118 NEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE------IF 165
            E+G ++  +E      +E     +NAG+Y+F+  +L+     +K  + +KE      I 
Sbjct: 139 IENGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIA 198

Query: 166 PLMSKEKQLYAMELK-GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVD 224
             + K + + A+ +    +M V    +  K   +    +++     +K+G      V++ 
Sbjct: 199 LAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKK---NAMKQG------VIMR 249

Query: 225 PTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
              TI     I   V       +E GV I   + + ++ +K+HS +E  II
Sbjct: 250 LPETI----YIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESII 296

Length = 430

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 36.6 bits (86), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR 255
             ++     IGP   IG  V IG  V+I  GV I  
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 238 NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI 297
           NVT+G  V I  G  +K   I  D  +  +S +E   +G  C +G + R+     L E  
Sbjct: 283 NVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAE-- 340

Query: 298 IGWKCVVGQWVRMENITVLGE 318
                 VG +V M+    LG+
Sbjct: 341 ---GAHVGNFVEMKK-ARLGK 357

Length = 456

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 39/154 (25%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVI---EG-GVCIKRSTILRDAIV------------KS 266
           V PTA +     IG NV +GPG  I   EG  + I  +  ++D +V            K+
Sbjct: 11  VHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN 70

Query: 267 HSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW-----KCVVGQW-VRMENITVLGEDV 320
            S   G I+     +G             C IG+        VG   V   N  V G  V
Sbjct: 71  VSIAHGAIVHGPAYIGD-----------NCFIGFRSVVFNAKVGDNCVIGHNAVVDG--V 117

Query: 321 IVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQD 354
            +    YV  G V+  ++   +L     DV    
Sbjct: 118 EIPPGRYVPAGAVITSQTQADAL----PDVTDSA 147

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG 272
           EG  I G V +   A +  G  I   V IG G  I     I+  T+L           +G
Sbjct: 10  EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVL----------GDG 59

Query: 273 CIIGWKCVVGQWVRMENITV-----LGECIIGWKCVVG 305
           C++G    V   + M+   V     +G+ ++G    +G
Sbjct: 60  CVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLG 97

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 229 IGPGCRIGPNVTI-----GPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283
           +G   ++G   +I     G    I   V I    I+ +  ++    LE CIIG   V+G+
Sbjct: 2   VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGE 61

Query: 284 WVRMENITVLGECIIG 299
             ++++      C++G
Sbjct: 62  KCKLKD------CLVG 71

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283
           TIG    IG    I PGV I  G           A++ + S +   +  +  V G 
Sbjct: 126 TIGEDVWIGAGAVILPGVTIGEG-----------AVIGAGSVVTKDVPPYGIVAGN 170

Length = 190

>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 59/258 (22%)

Query: 1   MLLHQIEALVEAGVREVILA-------------VSYRAE-----QMEDELTVETKKL--- 39
           M+ + ++ +V AG++E++L               SY  E     +++ +L  E + +   
Sbjct: 36  MIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPP 95

Query: 40  GISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKD--------LVSF 91
           G++++   + +PLG    +  A+  +     PF V+  D++ D    D        +++ 
Sbjct: 96  GVTIMNVRQGQPLGLGHSILCARPAIG--DNPFVVVLPDVVIDDASADPLRYNLAAMIAR 153

Query: 92  HKNHGKEGTIVVTQVEEPSKYGVVLYNEH-------GCIESFIEK---PQEFVSNKINAG 141
               G+   +      + S+Y V+   E          I  FIEK   PQ   S+ +  G
Sbjct: 154 FNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVG 213

Query: 142 MYIFN-----------PSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPR 190
            Y+ +           P    RI++     E      ++K++ + AM + G   D G+  
Sbjct: 214 RYVLSADIWPELERTEPGAWGRIQLTDAIAE------LAKKQSVDAMLMTGDSYDCGKKM 267

Query: 191 DFLKGMCLY-LNSLRQKR 207
            +++    Y L +L++  
Sbjct: 268 GYMQAFVKYGLRNLKEGA 285

Length = 297

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 38.2 bits (90), Expect = 0.002
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 219 GNVLVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL-EGCII- 275
            +  + P AT IG    +G   ++  G V+ G V    + I     +   + + +G ++ 
Sbjct: 4   PSAFIAPNATVIGD-VTLGEGSSVWFGAVLRGDV----NPI----RIGERTNIQDGSVLH 54

Query: 276 ---GWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322
              G+  ++G  V + +  VL  C IG  C++G    + +  V+G+  IV
Sbjct: 55  VDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIV 104

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 35/127 (27%)

Query: 92  HKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQE-----------FVSNKI 138
           H   G + T+   +V  EE S +GV+  +E+  I +F+EKP               S   
Sbjct: 152 HVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLAS--- 208

Query: 139 NAGMYIFNPSVLDRIEIK----PTS---IEKEIFPLMSKEKQLYA-----------MELK 180
             G+Y+FN   L  +  +    P S     K+I P + +E ++YA            E +
Sbjct: 209 -MGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEE 267

Query: 181 GFWMDVG 187
            +W DVG
Sbjct: 268 PYWRDVG 274

Length = 425

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 229 IGPGCRIGP----NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
           +  GC I      N  +  GV +  G  ++ S I+ +  +  ++ +   II    V+ 
Sbjct: 15  VSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIP 72

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 217 IVGNVLVDPTATIGPGC---------RIGPNVTIGPGVVI----EGGVCI-KRSTILRDA 262
           ++G+V +   +++  G          RIG    I  G V+         I    T+   A
Sbjct: 14  VIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGA 73

Query: 263 IVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
           +      L GC IG  C++G         +L   +IG   +V 
Sbjct: 74  V------LHGCTIGDNCLIGM-----GAIILDGAVIGKGSIVA 105

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVI-EGGVCIKRSTILRD 261
           L+     IG G  +     +GPGV I EG V   RS ++RD
Sbjct: 52  LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD 92

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. Length = 107

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
               A I P   + P+  IG GV I   V I     +           E  IIG   V+G
Sbjct: 88  PKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIG----------ENVIIGPGVVIG 137

Query: 283 QWVRM-ENITVLGECIIGWKCVVGQWVRMENITVLGED 319
             V + +   +    +I  +  +G+ V + +  V+G D
Sbjct: 138 DDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSD 175

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
KOG1322|consensus	371		100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
KOG1460|consensus	407		100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	100.0
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
KOG1461|consensus	673		100.0
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	100.0
KOG1462|consensus	433		100.0
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.97
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.97
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.96
PRK10122	297	GalU regulator GalF; Provisional	99.95
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.95
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.95
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.95
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.95
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.95
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.94
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.94
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.93
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.93
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.93
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.93
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.93
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.92
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.91
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.91
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.91
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.91
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.91
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.91
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.89
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.88
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.87
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.87
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.87
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.86
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.85
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.84
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.83
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.83
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.82
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.81
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.81
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.8
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.8
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.78
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.76
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.76
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.76
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.76
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.75
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.75
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.75
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.74
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.74
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.74
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.74
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.72
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.72
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.72
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.72
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.71
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.7
PLN02296	269	carbonate dehydratase	99.69
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.68
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.68
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.68
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.67
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.67
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.67
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.66
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.66
PRK13627	196	carnitine operon protein CaiE; Provisional	99.66
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.66
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.65
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.65
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.65
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.64
PLN02472	246	uncharacterized protein	99.64
PRK13627	196	carnitine operon protein CaiE; Provisional	99.63
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.62
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.61
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.61
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.6
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.6
PLN02296	269	carbonate dehydratase	99.6
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.59
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.57
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.56
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.55
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.55
PRK10502	182	putative acyl transferase; Provisional	99.55
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.54
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.54
PRK10092	183	maltose O-acetyltransferase; Provisional	99.53
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.53
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.52
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.51
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.51
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.51
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.51
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.51
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.5
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.5
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.5
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.49
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.49
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.49
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.47
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.47
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.46
KOG1461|consensus	673		99.46
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.45
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.45
PLN02472	246	uncharacterized protein	99.45
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.43
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.42
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.42
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.42
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.42
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.41
PRK11132	273	cysE serine acetyltransferase; Provisional	99.41
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.4
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.4
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.38
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.37
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.36
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.36
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.36
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.35
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.35
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.33
PLN02694	294	serine O-acetyltransferase	99.33
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.31
PRK10191	146	putative acyl transferase; Provisional	99.29
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.29
PLN02739	355	serine acetyltransferase	99.28
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.28
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.27
KOG4750|consensus	269		99.27
KOG1462|consensus	433		99.27
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.25
PLN02917	293	CMP-KDO synthetase	99.25
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.25
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.24
PRK10502	182	putative acyl transferase; Provisional	99.23
PRK11132	273	cysE serine acetyltransferase; Provisional	99.23
PLN02357	360	serine acetyltransferase	99.22
PLN02694	294	serine O-acetyltransferase	99.21
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.2
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.19
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.19
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.19
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.18
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.17
PRK10191	146	putative acyl transferase; Provisional	99.16
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.16
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.16
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.14
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.12
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.12
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.11
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.11
PLN02357	360	serine acetyltransferase	99.09
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.07
PLN02739	355	serine acetyltransferase	99.06
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.05
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.04
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.03
PRK10092	183	maltose O-acetyltransferase; Provisional	99.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.0
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.98
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.95
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.91
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.9
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	98.86
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.86
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.85
KOG3121|consensus	184		98.82
KOG4042|consensus	190		98.78
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.77
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.74
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.74
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.73
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.73
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	98.73
KOG3121|consensus	184		98.72
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	98.63
COG4801	277	Predicted acyltransferase [General function predic	98.59
KOG4750|consensus	269		98.57
KOG1460|consensus	407		98.57
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	98.5
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.48
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.46
KOG1322|consensus	371		98.3
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	98.27
KOG4042|consensus	190		98.27
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	98.25
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	98.24
COG4801	277	Predicted acyltransferase [General function predic	98.17
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	98.16
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	98.11
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	98.05
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	98.04
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	98.02
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	98.0
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	97.87
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.85
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.8
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	97.79
COG2068	199	Uncharacterized MobA-related protein [General func	97.73
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	97.42
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	97.35
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	97.19
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	97.12
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	97.1
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	96.98
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	96.88
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	96.85
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	96.32
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	96.26
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	96.18
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	96.17
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.03
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	95.69
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	95.21
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	94.78
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	93.93
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	93.4
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	92.26
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	91.78
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	90.91
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	90.6
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	89.73
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	88.94
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	88.15
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	88.06
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	86.98
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	85.17
COG1920	210	Predicted nucleotidyltransferase, CobY/MobA/RfbA f	84.29
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	84.16
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	84.14
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	82.59
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	82.22
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	81.37
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	81.12
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	81.11
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	81.1
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	80.27

>KOG1322|consensus

Probab=100.00  E-value=1.4e-55  Score=374.26  Aligned_cols=287  Identities=56%  Similarity=0.985  Sum_probs=265.8

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHH-ccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCC-cEEEEeCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL-TVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQE-PFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l-~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~-~~lv~~gD   78 (380)
                      ||.|++++|.++|+++|++.++|.++++..++ +.+...+++++.++.|.+++||++.+..+++++-...+ +|+|++||
T Consensus        42 mI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsD  121 (371)
T KOG1322|consen   42 MILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSD  121 (371)
T ss_pred             hhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCC
Confidence            79999999999999999999999988554444 44567789999999999999999999999999854333 79999999


Q ss_pred             cccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECC-CCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164          79 IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE-HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP  157 (380)
Q Consensus        79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~  157 (380)
                      +++++|+++|+++|++++++.|++.+++++|++||++..|+ +++|.+|.|||.++.++-+++|+|+|+|++++++...+
T Consensus       122 vi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~p  201 (371)
T KOG1322|consen  122 VICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLRP  201 (371)
T ss_pred             eeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhhhcc
Confidence            99999999999999999999999999999999999999997 89999999999999999999999999999999998888


Q ss_pred             CCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECC
Q psy9164         158 TSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGP  237 (380)
Q Consensus       158 ~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~  237 (380)
                      .+++.+++|.+++..+++++.++|||.|+|+|.+|+.+...+++..+...+.++.+++.+.+++.+++.+.+|++|.|++
T Consensus       202 tSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~  281 (371)
T KOG1322|consen  202 TSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGP  281 (371)
T ss_pred             cchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECC
Confidence            89999999999999999999999999999999999999999999998887778888899999999999999999999999


Q ss_pred             CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164         238 NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       238 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i  287 (380)
                      +++||++|+|++++.+.+|.+..+..++.++.+..+++|.++.||.+++|
T Consensus       282 ~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~i  331 (371)
T KOG1322|consen  282 NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARI  331 (371)
T ss_pred             CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEE
Confidence            99999999999999999999999999998888888888888888777655

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3e-48  Score=341.81  Aligned_cols=363  Identities=24%  Similarity=0.396  Sum_probs=287.8

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC-CCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN-KSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~-~~~~~~lv~~gD~   79 (380)
                      |++|+|+.+...+.+++.++++|.++++++.+.+.     -.+.|..|.+++||++|+++|++++. +.++++||++||.
T Consensus        32 Ml~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~  106 (460)
T COG1207          32 MLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDV  106 (460)
T ss_pred             HHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCc
Confidence            79999999999999999999999999999999862     15788999999999999999999993 3355799999998


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC----CCCCCeEEEEEEEeCHhHHhh-
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ----EFVSNKINAGMYIFNPSVLDR-  152 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~----~~~~~~~~~giyi~~~~~l~~-  152 (380)
                        ++...|+.+++.|...++.++++....++|.+||++..+++++|..|+|...    +.....+++|+|+|+...|.. 
T Consensus       107 PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~  186 (460)
T COG1207         107 PLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRA  186 (460)
T ss_pred             ccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHH
Confidence              6667799999999999999999999999999999999999999999998633    456688999999999886543 


Q ss_pred             c---cCCCCCccc---chhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhcccCc----ccc-cCCCccc
Q psy9164         153 I---EIKPTSIEK---EIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQKRP----KLL-KEGDGIV  218 (380)
Q Consensus       153 l---~~~~~~~~~---~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~~~----~~~-~~~~~i~  218 (380)
                      |   ..+..+-++   |++..+...+ ++.++...++  ...+++...+.++.+.+..+....+.    ..+ +....|.
T Consensus       187 L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~  266 (460)
T COG1207         187 LPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIR  266 (460)
T ss_pred             HHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEc
Confidence            3   223222232   3455555554 6667766654  46667766666665555544432210    011 1223455


Q ss_pred             cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEE
Q psy9164         219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII  298 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~i  298 (380)
                      ..+.|++++.|.+++.|..++.||++|+||++|.|.+|.|++++.|..+|+++++.++++|.|||++++.     +++.+
T Consensus       267 ~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LR-----Pg~~L  341 (460)
T COG1207         267 GDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLR-----PGAVL  341 (460)
T ss_pred             CcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccC-----CcCcc
Confidence            6677777777777777777889999999999999999999999999999999999999999999999995     47888


Q ss_pred             CccceeCcceEEccceEECCCe-----------EECcceEEcCCeeecc--------eeecCc-----ceeecceeEecC
Q psy9164         299 GWKCVVGQWVRMENITVLGEDV-----------IVQDELYVNGGQVLPH--------KSIGSS-----LHMLGEDVIVQD  354 (380)
Q Consensus       299 g~~~~ig~~~~i~~~~~ig~~~-----------~ig~~~~i~~~~v~~~--------~~i~~~-----~~~~~~~v~i~~  354 (380)
                      ++++.||++|.+++ +.||+++           .||+++.||+|++--+        +.||++     .+.+.+||+||+
T Consensus       342 ~~~~hIGNFVEvK~-a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd  420 (460)
T COG1207         342 GADVHIGNFVEVKK-ATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGD  420 (460)
T ss_pred             cCCCeEeeeEEEec-ccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecC
Confidence            99999999999876 5566554           5688888888884322        345543     345577999999


Q ss_pred             ceEEeceeeeccccccCCCCCCCcc
Q psy9164         355 ELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       355 ~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +++||+||+     +|+|||++++.
T Consensus       421 ~a~iaAGSt-----IT~DVp~~aLa  440 (460)
T COG1207         421 GATIAAGST-----ITKDVPEGALA  440 (460)
T ss_pred             CcEEcccce-----EcccCCCCcee
Confidence            999999999     99999999875

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.2e-46  Score=339.52  Aligned_cols=309  Identities=38%  Similarity=0.656  Sum_probs=265.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|++++++.++|+.+++++|+.+ ...+++++.|+.+.+++||+++++++.+++.  .++|++++||++
T Consensus        34 ii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d-~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~--~~~f~v~~GDv~  110 (358)
T COG1208          34 LIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD-GEGLGVRITYVVEKEPLGTAGALKNALDLLG--GDDFLVLNGDVL  110 (358)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc-ccccCCceEEEecCCcCccHHHHHHHHHhcC--CCcEEEEECCee
Confidence            6999999999999999999999999999999988 4567899999999999999999999999995  389999999999


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCC-CceeEEEeCCC--CCCCCeEEEEEEEeCHhHHhhcc-CC
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH-GCIESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIE-IK  156 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~-~~v~~~~ek~~--~~~~~~~~~giyi~~~~~l~~l~-~~  156 (380)
                      ++.|++.++++|+++.+.+|+...+.+++..||.+..+++ +++.+|.|||.  ...++++++|+|+|++++|+.+. ..
T Consensus       111 ~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~  190 (358)
T COG1208         111 TDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGE  190 (358)
T ss_pred             eccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccCC
Confidence            9999999999999998888999988888889999988744 59999999994  66789999999999999999775 45


Q ss_pred             CCCcccchhhhhhcCCc-EEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccc-------cCCCccccceeeCCCCE
Q psy9164         157 PTSIEKEIFPLMSKEKQ-LYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLL-------KEGDGIVGNVLVDPTAT  228 (380)
Q Consensus       157 ~~~~~~~il~~l~~~~~-i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~-------~~~~~i~~~~~i~~~~~  228 (380)
                      ..+++.+++|.++++++ ++++.+.++|.++++|++|.++++..+...........       .. ..+.+++++++++.
T Consensus       191 ~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~  269 (358)
T COG1208         191 RFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAK  269 (358)
T ss_pred             cccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCE
Confidence            66777789999999997 99999999999999999999999888864433211111       12 56789999999999


Q ss_pred             ECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcce
Q psy9164         229 IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWV  308 (380)
Q Consensus       229 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~  308 (380)
                      |++++.|+++++||++|.|++++.|.+|+|+++|.|++++++.+++||++|.||+++ .          +|+ +.+|.++
T Consensus       270 i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~----------i~d-~~~g~~~  337 (358)
T COG1208         270 IGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I----------IGD-VVIGINS  337 (358)
T ss_pred             ECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e----------ecc-eEecCce
Confidence            999999999999999999999999999999999999999999999999999999811 1          566 6666666


Q ss_pred             EEccceEECCCeEECcc
Q psy9164         309 RMENITVLGEDVIVQDE  325 (380)
Q Consensus       309 ~i~~~~~ig~~~~ig~~  325 (380)
                      .+.++++++++++++.+
T Consensus       338 ~i~~g~~~~~~~~~~~~  354 (358)
T COG1208         338 EILPGVVVGPGSVVESG  354 (358)
T ss_pred             EEcCceEeCCCccccCc
Confidence            66665655555554443

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.1e-45  Score=348.97  Aligned_cols=362  Identities=22%  Similarity=0.359  Sum_probs=279.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|++++++++++..+++.+++.+.     ..+.+..+++.+||+++++.+++++.+..++|++++||. 
T Consensus        33 li~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p  107 (459)
T PRK14355         33 MVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVP  107 (459)
T ss_pred             HHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEecCCCCCHHHHHHHHHHHhhccCCcEEEEECCcc
Confidence            68999999999999999999999999999999752     145566678889999999999999953346799999997 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l-~~l  153 (380)
                       +.+.+++++++.|++.++.++++..+.+++..|+.+.+|+++++.++.|||..    ..++++++|+|+|+++.+ +.+
T Consensus       108 ~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l  187 (459)
T PRK14355        108 LLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAI  187 (459)
T ss_pred             CcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHH
Confidence             56788999999998888888888888888888999888888999999987632    134789999999999864 444


Q ss_pred             cC---C---CCCcccchhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhccc----CcccccCCC-cccc
Q psy9164         154 EI---K---PTSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQK----RPKLLKEGD-GIVG  219 (380)
Q Consensus       154 ~~---~---~~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~-~i~~  219 (380)
                      +.   .   ......++++.+++++ +++++.+.++  |.++++|++|++++.+++......    ....+.+.+ .+.+
T Consensus       188 ~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~  267 (459)
T PRK14355        188 GRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDR  267 (459)
T ss_pred             HHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECC
Confidence            31   1   1112346889998886 6999999887  999999999999977555443221    122344443 5788


Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ++.|++++.|+++|.|+++++||++|.|++++.|.+++||++|.|++++.+.+++|++++.||+++.+.+     ++.++
T Consensus       268 ~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~-----~~~i~  342 (459)
T PRK14355        268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRP-----GTELS  342 (459)
T ss_pred             CeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECC-----CCEeC
Confidence            8999999999999999999999999999999999999999999999999999999999999999998854     44445


Q ss_pred             ccceeCcceE-----------EccceEECCCeEECcceEEcCCeee--------------cceeecCcceeecceeEecC
Q psy9164         300 WKCVVGQWVR-----------MENITVLGEDVIVQDELYVNGGQVL--------------PHKSIGSSLHMLGEDVIVQD  354 (380)
Q Consensus       300 ~~~~ig~~~~-----------i~~~~~ig~~~~ig~~~~i~~~~v~--------------~~~~i~~~~~~~~~~v~i~~  354 (380)
                      +++.||+++.           +.+.+.+| ++.||+++.||++++.              .+..||.++. +.++++||+
T Consensus       343 ~~~~ig~~~~~~~~~ig~~~~~~~~~~ig-~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~-i~~~~~ig~  420 (459)
T PRK14355        343 AHVKIGNFVETKKIVMGEGSKASHLTYLG-DATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQ-FVAPVTVGR  420 (459)
T ss_pred             CCCEECCCccccCCEECCCceeeeecccc-CCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCE-EeCCcEECC
Confidence            5555544433           22222221 2344444444444322              2223444433 456789999


Q ss_pred             ceEEeceeeeccccccCCCCCCCcc
Q psy9164         355 ELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       355 ~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +++|+++++     |++|+|+++++
T Consensus       421 ~~~i~a~s~-----v~~~v~~~~~~  440 (459)
T PRK14355        421 NSLIAAGTT-----VTKDVPPDSLA  440 (459)
T ss_pred             CCEECCCCE-----EcccCCCCcEE
Confidence            999999999     99999999886

>KOG1460|consensus

Probab=100.00  E-value=4.7e-45  Score=305.12  Aligned_cols=289  Identities=34%  Similarity=0.665  Sum_probs=261.2

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD   78 (380)
                      ||+|.|++|.+. |+.+|+++--|..+.+.+|++.-...+.+.++|..++.++||++.|++.++.+.. ..+.+.++++|
T Consensus        37 mI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaD  116 (407)
T KOG1460|consen   37 MIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNAD  116 (407)
T ss_pred             hhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecc
Confidence            799999999995 8999999988999999999988666778889999999999999999999998753 46779999999


Q ss_pred             cccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEEC-CCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC
Q psy9164          79 IICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYN-EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI  155 (380)
Q Consensus        79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~  155 (380)
                      +-++++|++|++.|+..+..+|++..++  +++..||.+..| .++++++++|||..+.++.+++|+|+|++++|+.+.+
T Consensus       117 VCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~  196 (407)
T KOG1460|consen  117 VCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAE  196 (407)
T ss_pred             eecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHH
Confidence            9999999999999999999999999886  456889999988 7899999999999999999999999999999876631


Q ss_pred             --------------------C---CCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCccccc
Q psy9164         156 --------------------K---PTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK  212 (380)
Q Consensus       156 --------------------~---~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~  212 (380)
                                          .   .-.++.|+++.|+.++++|+|..+++|..+.++...+.+++.+|++++...+.++.
T Consensus       197 v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~La  276 (407)
T KOG1460|consen  197 VYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLA  276 (407)
T ss_pred             HHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhc
Confidence                                1   12356789999999999999999999999999999999999999999988887776


Q ss_pred             CC--C--ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEe
Q psy9164         213 EG--D--GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRME  288 (380)
Q Consensus       213 ~~--~--~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~  288 (380)
                      .+  .  .|.++++|+|++++.+.++||||++||++++||+++++++|+|-+++.|.+++.+-+|+||..+.||.++++.
T Consensus       277 k~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe  356 (407)
T KOG1460|consen  277 KGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVE  356 (407)
T ss_pred             CCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeec
Confidence            33  3  4889999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             e
Q psy9164         289 N  289 (380)
Q Consensus       289 ~  289 (380)
                      .
T Consensus       357 ~  357 (407)
T KOG1460|consen  357 G  357 (407)
T ss_pred             c
Confidence            3

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-43  Score=312.89  Aligned_cols=298  Identities=24%  Similarity=0.409  Sum_probs=250.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcE-----EEEee-------cCCCCCCchHHHHhHHhhCCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGIS-----LVFSH-------ENEPLGTAGPLALAKDILNKS   68 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~-----i~~~~-------~~~~~gt~~al~~a~~~i~~~   68 (380)
                      ||+++|++|.++|+++|.|+++|++..+.+|++. +..|+..     +.+..       +.+..||++|+++...++.+.
T Consensus        39 iIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~-G~~w~l~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~  117 (393)
T COG0448          39 IIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGR-GWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRS  117 (393)
T ss_pred             EEeEEcccccccCCCeEEEEeccchhHHHHHhhC-CCccccccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhc
Confidence            5789999999999999999999999999999988 4455321     22221       136779999999988888543


Q ss_pred             -CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECCCCceeEEEeCCCC-CCCC-eEEEEEE
Q psy9164          69 -QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNEHGCIESFIEKPQE-FVSN-KINAGMY  143 (380)
Q Consensus        69 -~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~~~~v~~~~ek~~~-~~~~-~~~~giy  143 (380)
                       .+.+|++.||+++++|+++|++.|.++++++|+++.+++  +++.||.+..|+++++++|.|||.+ ...+ ++++|+|
T Consensus       118 ~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~~~~laSMgiY  197 (393)
T COG0448         118 DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGPPSNSLASMGIY  197 (393)
T ss_pred             CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeeeccCcCCcccceeeeeeE
Confidence             567999999999999999999999999999999999875  5788999999999999999999997 5554 8999999


Q ss_pred             EeCHhHHhhc-c------CCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCc
Q psy9164         144 IFNPSVLDRI-E------IKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDG  216 (380)
Q Consensus       144 i~~~~~l~~l-~------~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  216 (380)
                      +|++++|..+ .      ....+|..+++|.+.+++.+++|++.+||.+++|.++|++++..+++....  -..+.+.+.
T Consensus       198 If~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~--~~lyd~~w~  275 (393)
T COG0448         198 IFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPE--LNLYDRNWP  275 (393)
T ss_pred             EEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCc--ccccCCCCc
Confidence            9999988554 2      223568889999999999999999999999999999999999988873221  234677888


Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecce
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGEC  296 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~  296 (380)
                      |.......|++++..+..+ .++.++.||.|..  .+.+|+++.+++|+++|.|.+|+|+++|.||++|.|      .++
T Consensus       276 IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l------~~a  346 (393)
T COG0448         276 IYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVL------RRA  346 (393)
T ss_pred             eeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEE------EEE
Confidence            9888888899999888887 4999999999965  899999999999999999999999999999999999      445


Q ss_pred             EECccceeCcceEE
Q psy9164         297 IIGWKCVVGQWVRM  310 (380)
Q Consensus       297 ~ig~~~~ig~~~~i  310 (380)
                      +|.++|.|+++++|
T Consensus       347 IIDk~v~I~~g~~i  360 (393)
T COG0448         347 IIDKNVVIGEGVVI  360 (393)
T ss_pred             EeCCCcEeCCCcEE
Confidence            55544444444433

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=2.2e-42  Score=331.77  Aligned_cols=368  Identities=19%  Similarity=0.250  Sum_probs=271.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|++++++++++..+++++++.+.    ...+.+..+++..||+++++.+.+++.. .+++|++++||.
T Consensus        34 li~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~~~~~~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~  109 (482)
T PRK14352         34 MLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL----APEVDIAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDV  109 (482)
T ss_pred             HHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc----CCccEEEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCe
Confidence            68999999999999999999999999999998652    1234556678889999999999999842 135699999997


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHHhhc
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l~~l  153 (380)
                        +...+++++++.|++.++.++++..+..++..||.+..++++++.+|.|||...    ..+++++|+|+|+++.|..+
T Consensus       110 P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~  189 (482)
T PRK14352        110 PLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSA  189 (482)
T ss_pred             eccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHH
Confidence              456779999999998888888888888889999998888889999999998743    24678999999999998543


Q ss_pred             -c---CC---CCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhH------HHHHHHHHhhhcccCcccccC-CCccc
Q psy9164         154 -E---IK---PTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDF------LKGMCLYLNSLRQKRPKLLKE-GDGIV  218 (380)
Q Consensus       154 -~---~~---~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~------~~a~~~~l~~~~~~~~~~~~~-~~~i~  218 (380)
                       .   ..   ......|+++.+++++ +++++.+.++|.++++++.+      ..+++..+..+.+.....+.+ ...|.
T Consensus       190 ~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~  269 (482)
T PRK14352        190 LARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWID  269 (482)
T ss_pred             HHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEe
Confidence             2   11   1122357889998886 79999999999999988776      333333344333222222232 45677


Q ss_pred             cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe-cceE
Q psy9164         219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL-GECI  297 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~-~~~~  297 (380)
                      ++++|++++.|++++.|+++++||++|.|+++|.|.+++||++|.|+. +.+.+++|++++.||+++.+.+++.. .++.
T Consensus       270 ~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~  348 (482)
T PRK14352        270 VDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGK  348 (482)
T ss_pred             CCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCE
Confidence            889999999999999999999999999999999999999999999975 78888999999999988888542222 1222


Q ss_pred             ECc-----cceeCcceEEcc-----ceEECCCeEECcceEEcCC-------eeecc-eeecCcceeecceeEecCceEEe
Q psy9164         298 IGW-----KCVVGQWVRMEN-----ITVLGEDVIVQDELYVNGG-------QVLPH-KSIGSSLHMLGEDVIVQDELYVN  359 (380)
Q Consensus       298 ig~-----~~~ig~~~~i~~-----~~~ig~~~~ig~~~~i~~~-------~v~~~-~~i~~~~~~~~~~v~i~~~~~i~  359 (380)
                      +|.     ++.|++++.+.+     +++||++|.||+++.+...       +++++ .+||.+ +.+.++++||++++||
T Consensus       349 ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~-~~i~~~~~Ig~~~~ig  427 (482)
T PRK14352        349 LGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSD-TMFVAPVTVGDGAYTG  427 (482)
T ss_pred             ECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCC-CEEeCCCEECCCcEEC
Confidence            221     122333333332     2345555555555554321       12222 234444 3345678999999999


Q ss_pred             ceeeeccccccCCCCCCCcc
Q psy9164         360 GGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       360 ~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +|++     |++|+|+++++
T Consensus       428 ags~-----v~~~v~~~~~~  442 (482)
T PRK14352        428 AGTV-----IREDVPPGALA  442 (482)
T ss_pred             CCCE-----EcCCCCCCcEE
Confidence            9999     99999999864

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=2.3e-42  Score=330.10  Aligned_cols=362  Identities=22%  Similarity=0.334  Sum_probs=267.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|+++++|+++++.+++++++..      ..+.+..+++.+||+++++.+.+++...+++|++++||. 
T Consensus        37 li~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~------~~i~~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P  110 (481)
T PRK14358         37 MVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG------SGVAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTP  110 (481)
T ss_pred             HHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc------CCcEEecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCee
Confidence            6899999999999999999999999999999853      135566677888999999999998843346799999997 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCH---hHHh
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNP---SVLD  151 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~---~~l~  151 (380)
                       +.+.+++++++.|+++++.+|+++.+.+++.+||.+..|+++++.+|.|||...    .++++++|+|+|++   ++++
T Consensus       111 ~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~  190 (481)
T PRK14358        111 LLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELAR  190 (481)
T ss_pred             ccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHH
Confidence             667789999999999998899998888888899999999889999999997633    24678999999995   4555


Q ss_pred             hccCCC---CCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHH-HHHHhh-hc----ccCcccccCCC-ccccc
Q psy9164         152 RIEIKP---TSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGM-CLYLNS-LR----QKRPKLLKEGD-GIVGN  220 (380)
Q Consensus       152 ~l~~~~---~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~-~~~l~~-~~----~~~~~~~~~~~-~i~~~  220 (380)
                      .+....   .....|+++.+.+++ +++++...++|..++.-..+..++ ..++.. ..    ........+.. .+.++
T Consensus       191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  270 (481)
T PRK14358        191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT  270 (481)
T ss_pred             hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence            554321   112347888888886 689998888776666554443332 212221 11    10111122222 24678


Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW  300 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~  300 (380)
                      ++|++++.|++++.|.+++.||++|.|+++|.|.+++|+++|.|++++++.+++||+++.|++++.+..     ++.||+
T Consensus       271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~-----~~~Ig~  345 (481)
T PRK14358        271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRP-----GTVLGE  345 (481)
T ss_pred             cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcC-----CcEECC
Confidence            889999999999999989999999999999999999999999999999999999999999999988843     455555


Q ss_pred             cceeCcceEEc-----------c-----ceEECCCeEECcceEEcCC-------e-eecceeecCcceeecceeEecCce
Q psy9164         301 KCVVGQWVRME-----------N-----ITVLGEDVIVQDELYVNGG-------Q-VLPHKSIGSSLHMLGEDVIVQDEL  356 (380)
Q Consensus       301 ~~~ig~~~~i~-----------~-----~~~ig~~~~ig~~~~i~~~-------~-v~~~~~i~~~~~~~~~~v~i~~~~  356 (380)
                      ++.|++++.++           .     .++||+++.||+++.+.+.       + +..+..||.+ +.+.++++||+++
T Consensus       346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~-~~i~~~~~Ig~~~  424 (481)
T PRK14358        346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSN-TTLIAPRVVGDAA  424 (481)
T ss_pred             CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCC-CEEcCCcEECCCC
Confidence            55555544431           1     2445555555555555431       1 1122233333 3345567889999


Q ss_pred             EEeceeeeccccccCCCCCCCcc
Q psy9164         357 YVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       357 ~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +|++|++     |++|+|+++++
T Consensus       425 ~i~~gs~-----v~~~v~~~~~~  442 (481)
T PRK14358        425 FIAAGSA-----VHDDVPEGAMA  442 (481)
T ss_pred             EECCCCE-----EecccCCCCEE
Confidence            9998888     99999998875

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=1.9e-42  Score=327.01  Aligned_cols=348  Identities=16%  Similarity=0.283  Sum_probs=248.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCC---------cEEEEeecC-----CCCCCchHHHHhHHhhC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLG---------ISLVFSHEN-----EPLGTAGPLALAKDILN   66 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~---------~~i~~~~~~-----~~~gt~~al~~a~~~i~   66 (380)
                      ||+|+|++|.++|+++|+|+++|+.+++++|+.+.+ .++         +.+.+..+.     +++||+++++.++.++.
T Consensus        37 lId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~  115 (436)
T PLN02241         37 LIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAY-NFGNGGNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFE  115 (436)
T ss_pred             EehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccC-CCCCCcccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHH
Confidence            689999999999999999999999999999997632 122         333333332     47899999999988774


Q ss_pred             CC----CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECCCCceeEEEeCCCCCC------
Q psy9164          67 KS----QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNEHGCIESFIEKPQEFV------  134 (380)
Q Consensus        67 ~~----~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~~~~v~~~~ek~~~~~------  134 (380)
                      +.    +++|||++||++++.|+.+++++|+++++++|+++.+++  ++..||++.+|+++++.+|.|||....      
T Consensus       116 ~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~  195 (436)
T PLN02241        116 DAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQV  195 (436)
T ss_pred             hcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEEEEEECCCCcccccccc
Confidence            32    478999999999999999999999999999999988775  468899999998899999999986432      


Q ss_pred             ---------------CCeEEEEEEEeCHhHHhhc-cC---CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHH
Q psy9164         135 ---------------SNKINAGMYIFNPSVLDRI-EI---KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLK  194 (380)
Q Consensus       135 ---------------~~~~~~giyi~~~~~l~~l-~~---~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~  194 (380)
                                     .+++++|+|+|++++|..+ ++   ...++..++++.+++++ +++++.++++|.+++++++|++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~  275 (436)
T PLN02241        196 DTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYE  275 (436)
T ss_pred             cccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHH
Confidence                           3799999999999999543 32   22356678999999884 8999999999999999999999


Q ss_pred             HHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeE
Q psy9164         195 GMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCI  274 (380)
Q Consensus       195 a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~  274 (380)
                      ++..++....  ....+.+.+.+.......+++.+ .++.+.+ ++|+++|+|+ ++.|++|+|+++|.|+++|+|.+++
T Consensus       276 a~~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~si  350 (436)
T PLN02241        276 ANLALTKQPP--KFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTV  350 (436)
T ss_pred             HHHHHhcCCc--hhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeE
Confidence            9988887431  11122333333333333355555 4566654 8899999998 8888889999999999988888877


Q ss_pred             EcCCCEECCceEEeeeeEecceEECcc---ceeCcceEEccceEECCCeEECcceEEcCCe-eecceeecCcceeecce-
Q psy9164         275 IGWKCVVGQWVRMENITVLGECIIGWK---CVVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKSIGSSLHMLGED-  349 (380)
Q Consensus       275 ig~~~~ig~~~~i~~~~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-v~~~~~i~~~~~~~~~~-  349 (380)
                      ++.......+...       ..+...+   +.||+++.+. +++|+++++||+++.+.++. +..+.++|+++++ +++ 
T Consensus       351 i~g~~~~~~~~~~-------~~~~~~~~~~~~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~-~~~~  421 (436)
T PLN02241        351 MMGADYYETEEEI-------ASLLAEGKVPIGIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYI-RSGI  421 (436)
T ss_pred             EECCCcccccccc-------ccccccCCcceEECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEE-eCCE
Confidence            7553211111100       0111111   1344444444 35566666666666665443 2233344444333 334 


Q ss_pred             eEecCceEEeceee
Q psy9164         350 VIVQDELYVNGGQV  363 (380)
Q Consensus       350 v~i~~~~~i~~~~v  363 (380)
                      |+||++++|++|++
T Consensus       422 ~~i~~~~~~~~~~~  435 (436)
T PLN02241        422 VVILKNAVIPDGTV  435 (436)
T ss_pred             EEEcCCcEeCCCCC
Confidence            57888888887776

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.2e-42  Score=322.89  Aligned_cols=313  Identities=24%  Similarity=0.380  Sum_probs=243.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCc-------EEE--EeecCC---CCCCchHHHHhHHhhCCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGI-------SLV--FSHENE---PLGTAGPLALAKDILNKS   68 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~-------~i~--~~~~~~---~~gt~~al~~a~~~i~~~   68 (380)
                      ||+|+|++|.++|+++|+|+++|+.+++++|+.+ ..+|++       .+.  +..+.+   .+||+++++.|++++.+.
T Consensus        37 li~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~  115 (380)
T PRK05293         37 IIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGI-GSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQY  115 (380)
T ss_pred             ehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhC-CCcccccCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhC
Confidence            6899999999999999999999999999999976 344443       332  333333   589999999999999422


Q ss_pred             -CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEe
Q psy9164          69 -QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIF  145 (380)
Q Consensus        69 -~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~  145 (380)
                       .++|||++||.+++.++.++++.|+++++++|+++...  +++.+||.+..|++++|.+|.|||....+++.++|+|+|
T Consensus       116 ~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~~~~~~~Giyi~  195 (380)
T PRK05293        116 DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIF  195 (380)
T ss_pred             CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeCCCCCCcceeeeEEEEE
Confidence             36799999999999999999999999888888887654  467889999998889999999999877788999999999


Q ss_pred             CHhHHhh-ccC------CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCcc
Q psy9164         146 NPSVLDR-IEI------KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGI  217 (380)
Q Consensus       146 ~~~~l~~-l~~------~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i  217 (380)
                      ++++|.. +..      ...++..++++.+++++ +++++..+++|.+++++++|++++..++.....  ...+.+.+.+
T Consensus       196 ~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~--~~~~~~~~~~  273 (380)
T PRK05293        196 NWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENP--LNLFDRNWRI  273 (380)
T ss_pred             cHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCch--hhhcCCCCce
Confidence            9998854 322      12244568899988775 799999999999999999999998777754322  1122333444


Q ss_pred             ccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceE
Q psy9164         218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI  297 (380)
Q Consensus       218 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~  297 (380)
                      ...+.+.++++|++++.|. ++.||++|.|+.  .+.+|+||++|.|+++|+|.+|+|++++.|+++|.|      .+++
T Consensus       274 ~~~~~~~~~~~i~~~~~i~-~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i------~~~i  344 (380)
T PRK05293        274 YSVNPNLPPQYIAENAKVK-NSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI------ERAI  344 (380)
T ss_pred             ecCCcCCCCCEECCCCEEe-cCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEE------eEEE
Confidence            4555566667777777773 778888888863  577899999999999999999999999999999998      5677


Q ss_pred             ECccceeCcceEEccc----eEECCCeEECcc
Q psy9164         298 IGWKCVVGQWVRMENI----TVLGEDVIVQDE  325 (380)
Q Consensus       298 ig~~~~ig~~~~i~~~----~~ig~~~~ig~~  325 (380)
                      +++++.|+.++.+.++    .+||+++.|+++
T Consensus       345 i~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~  376 (380)
T PRK05293        345 IGENAVIGDGVIIGGGKEVITVIGENEVIGVG  376 (380)
T ss_pred             ECCCCEECCCCEEcCCCceeEEEeCCCCCCCC
Confidence            7777777777666553    334444443333

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=100.00  E-value=1.1e-41  Score=326.07  Aligned_cols=359  Identities=23%  Similarity=0.363  Sum_probs=266.8

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|++++++++++..+++.+++.+.    +  +.+..+.+.+||+++++++.+++.. .++|++++||. 
T Consensus        30 li~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~--i~~~~~~~~~G~~~ai~~a~~~l~~-~~~~lv~~~D~p  102 (451)
T TIGR01173        30 MLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----D--VNWVLQAEQLGTGHAVLQALPFLPD-DGDVLVLYGDVP  102 (451)
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----C--cEEEEcCCCCchHHHHHHHHHhcCC-CCcEEEEECCcC
Confidence            68999999999999999999999999999998752    3  4445566778999999999999942 35799999997 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l-~~l  153 (380)
                       +.+.++.++++.|++.  ..++++.+.+++..|+.+..|+++++..+.|||...    ...++++|+|+|+++.| +.+
T Consensus       103 ~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l  180 (451)
T TIGR01173       103 LISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWL  180 (451)
T ss_pred             CcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHH
Confidence             5566799999998765  367777777777789999888888999999986532    23578999999999985 434


Q ss_pred             cCC---C---CCcccchhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhccc---Ccccc--cCCCcccc
Q psy9164         154 EIK---P---TSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQK---RPKLL--KEGDGIVG  219 (380)
Q Consensus       154 ~~~---~---~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~---~~~~~--~~~~~i~~  219 (380)
                      +..   .   .....++++.+++++ +++.++.+++  |.++++|+++.+++.....+....   ....+  .....+.+
T Consensus       181 ~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  260 (451)
T TIGR01173       181 PKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRG  260 (451)
T ss_pred             HhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECC
Confidence            321   1   112246788888776 6889999887  899999999877654443322111   01111  22335678


Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ++.|++++.|++++.|+++++||++|.|++++.|.++.|+++|.|++++.+.++.||++|.||+++.|.+     +++||
T Consensus       261 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~-----~~~i~  335 (451)
T TIGR01173       261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRP-----GSVLG  335 (451)
T ss_pred             ccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECC-----CCEEC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999854     33444


Q ss_pred             ccceeCcceE-----------EccceEECCCeEECcceEEcCCeeec--------------ceeecCcceeecceeEecC
Q psy9164         300 WKCVVGQWVR-----------MENITVLGEDVIVQDELYVNGGQVLP--------------HKSIGSSLHMLGEDVIVQD  354 (380)
Q Consensus       300 ~~~~ig~~~~-----------i~~~~~ig~~~~ig~~~~i~~~~v~~--------------~~~i~~~~~~~~~~v~i~~  354 (380)
                      +++.||+++.           +.+.+.++ ++.||+++.|+++++..              +..||.++++ .++++||+
T Consensus       336 ~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~-~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i-~~~~~ig~  413 (451)
T TIGR01173       336 AGVHIGNFVETKNARIGKGSKAGHLSYLG-DAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQL-VAPVKVGD  413 (451)
T ss_pred             CCcEEccceeecCcEECCCcEecceeeEe-eeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEE-ECCcEECC
Confidence            4444444333           33322221 24555555555554332              2334444333 55789999


Q ss_pred             ceEEeceeeeccccccCCCCCCCccC
Q psy9164         355 ELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       355 ~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      +++||+|++     |++|+|++++++
T Consensus       414 ~~~i~~g~~-----v~~~v~~~~~~~  434 (451)
T TIGR01173       414 GATIAAGST-----VTKDVPEGALAI  434 (451)
T ss_pred             CCEEccCCE-----ECccCCCCcEEE
Confidence            999999999     999999999873

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=9.6e-41  Score=319.43  Aligned_cols=356  Identities=22%  Similarity=0.334  Sum_probs=265.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC-CCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS-QEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~-~~~~lv~~gD~   79 (380)
                      ||+|++++|.+.+++++++++++..+++++++.+      ..+.+..+++..||+++++.+.+++.+. .++|++++||.
T Consensus        35 li~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~  108 (456)
T PRK14356         35 MLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------EDARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDT  108 (456)
T ss_pred             HHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cCceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCc
Confidence            6899999999999999999999999999888754      1344556677899999999999998432 46799999998


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC------CCCCeEEEEEEEeCHhHHh
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE------FVSNKINAGMYIFNPSVLD  151 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~------~~~~~~~~giyi~~~~~l~  151 (380)
                        +...++.++++.|+  +++.+++..+.+++..||.+.. +++++.+|.|||.-      ..++++++|+|+|+++.++
T Consensus       109 P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~  185 (456)
T PRK14356        109 PLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVE  185 (456)
T ss_pred             ccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cCCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHH
Confidence              45667899998876  5567888888888999998876 67899999998651      3457889999999999875


Q ss_pred             hc-cC---C---CCCcccchhhhhhcCC-cEEEEEecc--EEEecCChhhHHHHHHHHHhhhcccCccccc--------C
Q psy9164         152 RI-EI---K---PTSIEKEIFPLMSKEK-QLYAMELKG--FWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK--------E  213 (380)
Q Consensus       152 ~l-~~---~---~~~~~~~il~~l~~~~-~i~~~~~~~--~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~--------~  213 (380)
                      .+ +.   .   ......++++.+.+.+ ++.++...+  .|.++++|++|.+++..+..+...   ..+.        +
T Consensus       186 ~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~---~~~~~~~~i~~~~  262 (456)
T PRK14356        186 SLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE---KHLESGVLIHAPE  262 (456)
T ss_pred             HHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH---HHHHcCCEEeCCC
Confidence            44 21   1   1112245777777665 688888765  579999999999887665544321   1122        2


Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL  293 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~  293 (380)
                      ...+++++.+++++.|.+++.|+++++||++|.|+++|.|.+++|+++|.|++++.+.+++||+++.||++++|.+    
T Consensus       263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~----  338 (456)
T PRK14356        263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP----  338 (456)
T ss_pred             cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECC----
Confidence            3445566666667777777777778899999999999999999999999999999999999999999999999954    


Q ss_pred             cceEECccceeCcceEE-----------ccceEECCCeEECcceEEcCCeee--------cceeec------Ccceeecc
Q psy9164         294 GECIIGWKCVVGQWVRM-----------ENITVLGEDVIVQDELYVNGGQVL--------PHKSIG------SSLHMLGE  348 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i-----------~~~~~ig~~~~ig~~~~i~~~~v~--------~~~~i~------~~~~~~~~  348 (380)
                       ++++|+++.||+++.+           .+.+.++ ++.||+++.|+++++.        .+..||      .++. +.+
T Consensus       339 -~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~-i~~  415 (456)
T PRK14356        339 -GAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTA-LVA  415 (456)
T ss_pred             -CCEECCCCEecCCceeeeeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCE-EeC
Confidence             4444555555544433           3333333 3566666677666532        113344      4433 356


Q ss_pred             eeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164         349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      +++||++++||+|++     |++|+|++++++
T Consensus       416 ~~~ig~~~~i~~~~~-----v~~~~~~~~~~~  442 (456)
T PRK14356        416 PVTIGDGALVGAGSV-----ITKDVPDGSLAI  442 (456)
T ss_pred             CcEECCCCEEcCCCE-----EeccCCCCcEEE
Confidence            688999999999999     999999998863

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=2.6e-40  Score=305.77  Aligned_cols=299  Identities=22%  Similarity=0.354  Sum_probs=220.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|++++++++++ +.+++.+|+.+ ...|++++.+..+++.+||+++++.+++++.  +++|++++||.
T Consensus        32 li~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~--~~~~li~~gD~  108 (353)
T TIGR01208        32 ILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQGEPLGLAHAVYTARDFLG--DDDFVVYLGDN  108 (353)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEECCCCCCHHHHHHHHHHhcC--CCCEEEEECCe
Confidence            68999999999999999999999 99999999976 4567888888888889999999999999995  57899999999


Q ss_pred             ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC-
Q psy9164          80 ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT-  158 (380)
Q Consensus        80 i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~-  158 (380)
                      +++.+++++++.|+++++++|+++.+.+++..||.+..++++++.+|.|||....+++.++|+|+|++.+++.+..... 
T Consensus       109 ~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~  188 (353)
T TIGR01208       109 LIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPS  188 (353)
T ss_pred             ecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCC
Confidence            9999999999999999999999998888888899988876678999999998777899999999999988887743211 


Q ss_pred             ----CcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCc
Q psy9164         159 ----SIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGC  233 (380)
Q Consensus       159 ----~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~  233 (380)
                          ....++++.+++++ +++++.+.++|.++++|++|.+++..++.+...... .      +.+.+.+.+.++|++++
T Consensus       189 ~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~-~------i~~~~~i~~~~~i~~~~  261 (353)
T TIGR01208       189 WRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQ-G------VDDESKIRGRVVVGEGA  261 (353)
T ss_pred             CCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccC-C------cCCCCEEcCCEEECCCC
Confidence                11245788888776 799999999999999999999999988875432211 1      23334444445555555


Q ss_pred             EECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeee-eEecceEECccceeCcceEEc
Q psy9164         234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENI-TVLGECIIGWKCVVGQWVRME  311 (380)
Q Consensus       234 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~-~~~~~~~ig~~~~ig~~~~i~  311 (380)
                      .| +++.|++.|.||++|.|++++|+++|.|+++|.|.++.|. ++.|++++.+.+. ++..++++|+++.|++++.+.
T Consensus       262 ~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~-~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~  338 (353)
T TIGR01208       262 KI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVE-HSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRP  338 (353)
T ss_pred             EE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEE-eeEEcCCCEEcCCcceeecCEEcCCCEECCCcccc
Confidence            55 3445544555555555555555555555555554433332 3344444444322 122455566666665555554

Alternate name: dTDP-D-glucose synthase

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=9e-41  Score=314.69  Aligned_cols=300  Identities=18%  Similarity=0.305  Sum_probs=230.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccccc----CC-cEEEEeecC-----CCCCCchHHHHhHHhhCCC-C
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKK----LG-ISLVFSHEN-----EPLGTAGPLALAKDILNKS-Q   69 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~----~~-~~i~~~~~~-----~~~gt~~al~~a~~~i~~~-~   69 (380)
                      ||+|+|++|.++|+++|+|+++|+.+++++|+.+.+..    .+ +.+.+..+.     ..+||+++++++++++.+. .
T Consensus        37 lI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~  116 (429)
T PRK02862         37 LIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDV  116 (429)
T ss_pred             EeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999999999999752211    12 223222221     1389999999999998432 3


Q ss_pred             CcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCC--------------
Q psy9164          70 EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEF--------------  133 (380)
Q Consensus        70 ~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~--------------  133 (380)
                      ++|||++||++++.|++++++.|++.++++|+++.+.  +++..||++..|+++++..|.|||...              
T Consensus       117 ~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~  196 (429)
T PRK02862        117 DEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGL  196 (429)
T ss_pred             CEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECCCccccchhccccccccc
Confidence            6799999999999999999999999999999988765  457889999999889999999998631              


Q ss_pred             -------CCCeEEEEEEEeCHhHHhh-ccC--CCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhh
Q psy9164         134 -------VSNKINAGMYIFNPSVLDR-IEI--KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSL  203 (380)
Q Consensus       134 -------~~~~~~~giyi~~~~~l~~-l~~--~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~  203 (380)
                             ...++++|+|+|++++|.. +..  ...++.++++|.+.++++++++..+++|.+++++++|++++..++...
T Consensus       197 ~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~  276 (429)
T PRK02862        197 SPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQP  276 (429)
T ss_pred             ccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCC
Confidence                   2358899999999999964 443  234566789999998889999999999999999999999998877332


Q ss_pred             cccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcC------
Q psy9164         204 RQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW------  277 (380)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~------  277 (380)
                      ... ...+.+.+.+...+.+.+.+.+ .++.+. ++.||++|.| +++.|++|+||++|.|++++.|.+|+|+.      
T Consensus       277 ~~~-~~~~~~~~~i~~~~~~~~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~  352 (429)
T PRK02862        277 NPP-FSFYDEKAPIYTRARYLPPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYES  352 (429)
T ss_pred             CCc-ccccCCCCceeccCCCCCCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCccccc
Confidence            221 1233344555555566666666 366775 6899999999 88999999999999999999999999976      


Q ss_pred             -------------CCEECCceEEeeeeEecceEECccceeCcceEE
Q psy9164         278 -------------KCVVGQWVRMENITVLGECIIGWKCVVGQWVRM  310 (380)
Q Consensus       278 -------------~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i  310 (380)
                                   ++.||++|.|      .++++++++.||+++.+
T Consensus       353 ~~~~~~~~~~~~~~~~Ig~~~~i------~~~ii~~~~~i~~~~~~  392 (429)
T PRK02862        353 SEEREELRKEGKPPLGIGEGTTI------KRAIIDKNARIGNNVRI  392 (429)
T ss_pred             ccccccccccCCcccEECCCCEE------EEEEECCCcEECCCcEE
Confidence                         4556666666      44444444444444444

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=8.3e-41  Score=319.31  Aligned_cols=358  Identities=20%  Similarity=0.299  Sum_probs=253.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|++++|.++|++++++++++..+++++++...      .+.+..+++..||+++++.+.+++. ..++|++++||. 
T Consensus        35 li~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~------~~~~i~~~~~~Gt~~al~~a~~~l~-~~~~vlV~~gD~P  107 (456)
T PRK09451         35 MVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE------PLNWVLQAEQLGTGHAMQQAAPFFA-DDEDILMLYGDVP  107 (456)
T ss_pred             HHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC------CcEEEECCCCCCcHHHHHHHHHhhc-cCCcEEEEeCCcc
Confidence            68999999999999999999999999999998641      3455667788999999999999884 246799999997 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHHh-hc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVLD-RI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l~-~l  153 (380)
                       +.+.++.++++.|++.+  .+++..+.+++..||++.. ++++|.+|.|||...    .++++++|+|+|+++.|. .+
T Consensus       108 ~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~-~~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l  184 (456)
T PRK09451        108 LISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR-ENGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWL  184 (456)
T ss_pred             cCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-cCCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHH
Confidence             66788999999886554  4566677788888998754 578999999998632    246899999999998875 33


Q ss_pred             cC---C---CCCcccchhhhhhcCC-cEEEEE------eccE--EEecCChhhHHHHHHH--HHh-hhcccCcccccCCC
Q psy9164         154 EI---K---PTSIEKEIFPLMSKEK-QLYAME------LKGF--WMDVGQPRDFLKGMCL--YLN-SLRQKRPKLLKEGD  215 (380)
Q Consensus       154 ~~---~---~~~~~~~il~~l~~~~-~i~~~~------~~~~--~~~i~~~~~~~~a~~~--~l~-~~~~~~~~~~~~~~  215 (380)
                      +.   .   ...+..|+++.+++++ ++..+.      +.|+  |.+++++++|++++..  .+. ......+..    .
T Consensus       185 ~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~----~  260 (456)
T PRK09451        185 AKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPAR----F  260 (456)
T ss_pred             HhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCE----E
Confidence            21   1   1123357899999886 778875      3555  6779999999887531  221 111111111    1


Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeE-ec
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITV-LG  294 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~-~~  294 (380)
                      .+.+++.+++++.|++++.|.++++||++|.|+++|.|.+++|+++|.|++++.+.+++||+++.|++++.|.+... .+
T Consensus       261 ~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~  340 (456)
T PRK09451        261 DLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAE  340 (456)
T ss_pred             EECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECC
Confidence            13355677778888888888778888888888888888888888888888888888888888888888777743221 12


Q ss_pred             c-----------eEECccceeCcceEEccceEECCCeEECcceEEcC-------Ceeecc-eeecCcceeecceeEecCc
Q psy9164         295 E-----------CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNG-------GQVLPH-KSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       295 ~-----------~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~-------~~v~~~-~~i~~~~~~~~~~v~i~~~  355 (380)
                      +           +.+++++.++..+.++ ++.||++|.||+++++.+       ++++.+ ..||.+ +.+.++++|+++
T Consensus       341 ~~~ig~~~~i~~~~i~~~~~~~~~~~~g-~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~-~~i~~~~~ig~~  418 (456)
T PRK09451        341 GAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSD-TQLVAPVTVGKG  418 (456)
T ss_pred             CceeccceeeeceeeCCCCccCcccccc-ccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCC-CEEeCCcEECCC
Confidence            2           2333333333333332 245555666665555432       112222 234444 345678899999


Q ss_pred             eEEeceeeeccccccCCCCCCCcc
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++||+||+     |++|+|+++++
T Consensus       419 ~~i~~gs~-----v~~~v~~~~~~  437 (456)
T PRK09451        419 ATIGAGTT-----VTRDVAENELV  437 (456)
T ss_pred             CEECCCCE-----EccccCCCCEE
Confidence            99999999     99999999886

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=8.5e-40  Score=312.05  Aligned_cols=361  Identities=18%  Similarity=0.238  Sum_probs=266.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|++++++++++..+++.+++.+.    +..+.+..+.+..|++++++.+++++...+++|++++||. 
T Consensus        35 li~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P  110 (446)
T PRK14353         35 MLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTP  110 (446)
T ss_pred             HHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcc
Confidence            68999999999999999999999999999988652    2233445566788999999999998842257799999997 


Q ss_pred             c-cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 I-CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 i-~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l-~~l  153 (380)
                      + ...+++.+++.+ +.+++.+++..+..++..||.+.. +++++.++.|||...    ...+.++|+|+|+++.| +.+
T Consensus       111 ~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l  188 (446)
T PRK14353        111 LITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KGGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALL  188 (446)
T ss_pred             cCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CCCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHH
Confidence            4 445577888744 455677787778778888998777 578999999997532    23688999999998765 433


Q ss_pred             cC---C---CCCcccchhhhhhcCC-cEEEEEec-cEEEecCChhhHHHHHHHHHhhhccc--C--cccccCC-Cccccc
Q psy9164         154 EI---K---PTSIEKEIFPLMSKEK-QLYAMELK-GFWMDVGQPRDFLKGMCLYLNSLRQK--R--PKLLKEG-DGIVGN  220 (380)
Q Consensus       154 ~~---~---~~~~~~~il~~l~~~~-~i~~~~~~-~~~~~i~~~~~~~~a~~~~l~~~~~~--~--~~~~~~~-~~i~~~  220 (380)
                      +.   .   ......+.++.+++++ +++.+..+ ..|.++++|++|.+++..+..+.+..  .  ...+.+. ..+++.
T Consensus       189 ~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
T PRK14353        189 DRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYD  268 (446)
T ss_pred             HhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCc
Confidence            22   1   1112345778888776 58888886 45999999999998876554332110  0  1112222 245677


Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      +.|++++.|++++.|++++.||++|.|++++.|.+++||++|.|++++.|. +++||++|.||+++.+      .++.|+
T Consensus       269 ~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i------~~~~i~  342 (446)
T PRK14353        269 TVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEV------KNAKLG  342 (446)
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEE------eceEEC
Confidence            888888888888888888888888888888888889999999999999996 6889999999998888      456666


Q ss_pred             ccceeCcceEEccceEECCCeEECcceEEcC-------Ceeecc-eeecCcceeecceeEecCceEEeceeeeccccccC
Q psy9164         300 WKCVVGQWVRMENITVLGEDVIVQDELYVNG-------GQVLPH-KSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGS  371 (380)
Q Consensus       300 ~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~-------~~v~~~-~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~  371 (380)
                      +++.++.++.+.+ ++||+++.||+++.+.+       ++++++ .+||.++ ++.++++||++++||++++     |++
T Consensus       343 ~~~~i~~~~~i~~-~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~-~i~~~~~Ig~~~~ig~~s~-----v~~  415 (446)
T PRK14353        343 EGAKVNHLTYIGD-ATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNS-ALVAPVTIGDGAYIASGSV-----ITE  415 (446)
T ss_pred             CCCEECCeeEEcC-cEEcCCcEECCceeeeccccccCCCcEECCCcEECCCC-EEeCCCEECCCCEECCCCE-----ECc
Confidence            6666666666543 56667777666665521       232222 3444443 3467789999999999999     999


Q ss_pred             CCCCCCccC
Q psy9164         372 SVPEPQIIM  380 (380)
Q Consensus       372 ~vp~~~iv~  380 (380)
                      |+|++++++
T Consensus       416 ~v~~~~~~~  424 (446)
T PRK14353        416 DVPDDALAL  424 (446)
T ss_pred             cCCCCCEEE
Confidence            999999863

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=5.8e-40  Score=307.93  Aligned_cols=301  Identities=19%  Similarity=0.339  Sum_probs=224.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEee---c------CCCCCCchHHHHhHHhhCCCC-C
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSH---E------NEPLGTAGPLALAKDILNKSQ-E   70 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~---~------~~~~gt~~al~~a~~~i~~~~-~   70 (380)
                      ||+|+|++|.++|+++|+|+++|+.+++++|+.+.+...++.+.+..   +      ++.+||+++++.+++++.+.. +
T Consensus        39 lI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~  118 (407)
T PRK00844         39 LIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPD  118 (407)
T ss_pred             EhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999753222222222321   1      125899999999999995322 4


Q ss_pred             cEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCC-------CCeEEEE
Q psy9164          71 PFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFV-------SNKINAG  141 (380)
Q Consensus        71 ~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~-------~~~~~~g  141 (380)
                      +|||++||++++.++.+++++|+++++++|+++.+.  +++..||++..|+++++..|.|||....       +.++++|
T Consensus       119 ~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~~~~~~~~~~~G  198 (407)
T PRK00844        119 YVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDEALASMG  198 (407)
T ss_pred             EEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCCCcccccCCCCCcEEEeE
Confidence            599999999999999999999999998899888764  5678899999998899999999986432       5799999


Q ss_pred             EEEeCHhHH-hhccC------CCCCcccchhhhhhcCCcEEEEEe------------ccEEEecCChhhHHHHHHHHHhh
Q psy9164         142 MYIFNPSVL-DRIEI------KPTSIEKEIFPLMSKEKQLYAMEL------------KGFWMDVGQPRDFLKGMCLYLNS  202 (380)
Q Consensus       142 iyi~~~~~l-~~l~~------~~~~~~~~il~~l~~~~~i~~~~~------------~~~~~~i~~~~~~~~a~~~~l~~  202 (380)
                      +|+|++++| +.++.      ...++..++++.++++++++++.+            .++|.|++++++|++++..+|..
T Consensus       199 iyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~  278 (407)
T PRK00844        199 NYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSV  278 (407)
T ss_pred             EEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCC
Confidence            999999996 54542      234566789999999999999866            59999999999999999988864


Q ss_pred             hcccCcccccCCCccccceeeCCCCEE-CCC--cEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCC
Q psy9164         203 LRQKRPKLLKEGDGIVGNVLVDPTATI-GPG--CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC  279 (380)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~--~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~  279 (380)
                      ....  ....+...+.......+.+.+ +..  ..+.++++||++|.|+ ++.|.+|+||++|.|+++++|.+|+|+++|
T Consensus       279 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~  355 (407)
T PRK00844        279 HPVF--NLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGV  355 (407)
T ss_pred             CCcc--ccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCC
Confidence            3211  111111222211111222222 111  1233578888888887 888888888999999988888888888888


Q ss_pred             EECCceEEeeeeEecceEECccceeCcceEE
Q psy9164         280 VVGQWVRMENITVLGECIIGWKCVVGQWVRM  310 (380)
Q Consensus       280 ~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i  310 (380)
                      .|+++|.|      .++++++++.|++++++
T Consensus       356 ~i~~~~~i------~~~ii~~~~~i~~~~~i  380 (407)
T PRK00844        356 RIGRGAVV------RRAILDKNVVVPPGATI  380 (407)
T ss_pred             EECCCCEE------EeeEECCCCEECCCCEE
Confidence            88888888      44555555555555444

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.4e-39  Score=309.31  Aligned_cols=344  Identities=19%  Similarity=0.271  Sum_probs=254.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|++++|.++ ++++.|++++..+++++++.+.  ..++++.+..++...||+++++.+.. .   .++||+++||..
T Consensus        32 li~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~gt~~al~~~~~-~---~d~vlv~~gD~p  104 (430)
T PRK14359         32 MLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEY--FPGVIFHTQDLENYPGTGGALMGIEP-K---HERVLILNGDMP  104 (430)
T ss_pred             HHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhc--CCceEEEEecCccCCCcHHHHhhccc-C---CCeEEEEECCcc
Confidence            689999999987 7899999999999999998752  12455554444566899999987432 2   578999999983


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHHhhccC-
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVLDRIEI-  155 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l~~l~~-  155 (380)
                      +.  ....++.+.+.++++++.+.+.+++..||.+..+ ++++..+.|+|..    ...++.++|+|+|++++|+.+.. 
T Consensus       105 ~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~  181 (430)
T PRK14359        105 LV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE-NGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPL  181 (430)
T ss_pred             CC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-CCeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHh
Confidence            21  2355566666667788888888888889987764 6899999998752    23467899999999999976521 


Q ss_pred             ---C---CCCcccchhhhhhcCC-cEEEEEec-cEEEecCChhhHHHHHHHHHhhhcccC-----------cccccCCCc
Q psy9164         156 ---K---PTSIEKEIFPLMSKEK-QLYAMELK-GFWMDVGQPRDFLKGMCLYLNSLRQKR-----------PKLLKEGDG  216 (380)
Q Consensus       156 ---~---~~~~~~~il~~l~~~~-~i~~~~~~-~~~~~i~~~~~~~~a~~~~l~~~~~~~-----------~~~~~~~~~  216 (380)
                         .   ......++++.+++++ ++..+..+ ++|.++++|++|.+++..+..+..+..           .....+++.
T Consensus       182 ~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~  261 (430)
T PRK14359        182 LKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVE  261 (430)
T ss_pred             cCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcE
Confidence               1   1122346778888774 68888886 589999999999999766555433211           112445556


Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECC----ceEEeeeeE
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ----WVRMENITV  292 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~----~~~i~~~~~  292 (380)
                      |.+++++++++.|++++.|+ +++||++|.|++ +.+.+++||+++.|+++++|.++.||++|.|+.    ++++++..+
T Consensus       262 i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~  339 (430)
T PRK14359        262 FEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSY  339 (430)
T ss_pred             EcCceEECCCCEECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEecccccccccc
Confidence            66777777777777777776 777888888866 666788899999999999888888888886555    345555566


Q ss_pred             ecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeec
Q psy9164         293 LGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLP  365 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p  365 (380)
                      .++|.||+++.||+++.+.+       .++||++++||.++.|                  .++++||++++||+|++  
T Consensus       340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i------------------~~~~~ig~~~~i~~g~~--  399 (430)
T PRK14359        340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQL------------------VAPVNIEDNVLIAAGST--  399 (430)
T ss_pred             ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEE------------------eCCcEECCCCEECCCCE--
Confidence            67777788888877776643       2566666666666665                  56788999999999999  


Q ss_pred             cccccCCCCCCCcc
Q psy9164         366 HKSIGSSVPEPQII  379 (380)
Q Consensus       366 ~~~v~~~vp~~~iv  379 (380)
                         |++|+|+++++
T Consensus       400 ---v~~~v~~~~~~  410 (430)
T PRK14359        400 ---VTKDVPKGSLA  410 (430)
T ss_pred             ---EccccCCCcEE
Confidence               99999999876

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.5e-39  Score=309.00  Aligned_cols=360  Identities=24%  Similarity=0.403  Sum_probs=262.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|+++++++++++.+++++++.+     +  +.+..+.+.+||+++++++.+++.+.+++|++++||. 
T Consensus        32 li~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~--~~~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p  104 (458)
T PRK14354         32 MVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R--SEFALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTP  104 (458)
T ss_pred             HHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C--cEEEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCcc
Confidence            6899999999999999999999999999999865     1  3345567788999999999999843235699999996 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l-~~l  153 (380)
                       +.+.+++++++.|++.+++.|+++...+++..|+.+..|+++++..+.|||..    ....++++|+|+|+++.| +.+
T Consensus       105 ~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l  184 (458)
T PRK14354        105 LITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEAL  184 (458)
T ss_pred             ccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHH
Confidence             56777999999998888888888888888888998888888899999998642    234688999999999744 544


Q ss_pred             cCC------CCCcccchhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhccc----CcccccC-CCcccc
Q psy9164         154 EIK------PTSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQK----RPKLLKE-GDGIVG  219 (380)
Q Consensus       154 ~~~------~~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~----~~~~~~~-~~~i~~  219 (380)
                      +..      ......++++.+.+++ +++++..+++  |.++++++++..++..+..+....    ....+.+ ...|++
T Consensus       185 ~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~  264 (458)
T PRK14354        185 KKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDA  264 (458)
T ss_pred             HHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECC
Confidence            221      1112246777777665 6889998865  567778888887765443332211    1112333 235777


Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ++.|++++.|++++.|++++.||++|.|++++.|.+++|+++|.|+. +.+.++.||++|.||++|.|.+     ++.||
T Consensus       265 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~-----~~~Ig  338 (458)
T PRK14354        265 DVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRP-----GSVIG  338 (458)
T ss_pred             CcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCCcEECCceEecC-----CCEEe
Confidence            88888888888888888888999999999999999999999999984 6777888888888888888843     44555


Q ss_pred             ccceeCcceEEccceEECCC-----------eEECcceEEcCCeeec--------ce------eecCcceeecceeEecC
Q psy9164         300 WKCVVGQWVRMENITVLGED-----------VIVQDELYVNGGQVLP--------HK------SIGSSLHMLGEDVIVQD  354 (380)
Q Consensus       300 ~~~~ig~~~~i~~~~~ig~~-----------~~ig~~~~i~~~~v~~--------~~------~i~~~~~~~~~~v~i~~  354 (380)
                      +++.|++++.+.+ +.|+++           +.||+++.|++++.+.        +.      .+|.++ .+.++++||+
T Consensus       339 ~~~~i~~~~~i~~-~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s-~i~~~~~ig~  416 (458)
T PRK14354        339 EEVKIGNFVEIKK-STIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNS-NLVAPVTVGD  416 (458)
T ss_pred             CCcEECCceEEee-eEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCC-EEeCCcEECC
Confidence            5555555544431 222222           2344445554444321        22      344443 3355688999


Q ss_pred             ceEEeceeeeccccccCCCCCCCccC
Q psy9164         355 ELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       355 ~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      +++||+|++     |++|+|++++++
T Consensus       417 ~~~v~~~~~-----v~~~~~~~~~~~  437 (458)
T PRK14354        417 NAYIAAGST-----ITKDVPEDALAI  437 (458)
T ss_pred             CCEECCCCE-----ECCCCCCCCEEE
Confidence            999999999     999999999863

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=7e-39  Score=305.90  Aligned_cols=353  Identities=20%  Similarity=0.268  Sum_probs=252.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.+.+ ++++|++++..+++.+++.+     +  +.+..+++.+||+++++++.+++.+ .++|++++||. 
T Consensus        30 li~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~--~~~~~~~~~~g~~~ai~~a~~~l~~-~~~vlv~~gD~p  100 (448)
T PRK14357         30 MINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----W--VKIFLQEEQLGTAHAVMCARDFIEP-GDDLLILYGDVP  100 (448)
T ss_pred             HHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----c--cEEEecCCCCChHHHHHHHHHhcCc-CCeEEEEeCCcc
Confidence            6899999999975 89999999999999988864     2  3345677889999999999999842 46799999996 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHHhh-c
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVLDR-I  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l~~-l  153 (380)
                       +.+.+++++++.|+++++++|+++.+.+++..||.+..+ ++++ .+.|||...    ..+++++|+|+|++++|.. +
T Consensus       101 ~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~  178 (448)
T PRK14357        101 LISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-GGKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVL  178 (448)
T ss_pred             cCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-CCeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHH
Confidence             677889999999999889999999998888899998876 6777 888876532    1358999999999998643 4


Q ss_pred             cC---CCC---CcccchhhhhhcCCcEEEEEeccE--EEecCChhhHHHHHHHHHhh----hcccCcccccCC-Cccccc
Q psy9164         154 EI---KPT---SIEKEIFPLMSKEKQLYAMELKGF--WMDVGQPRDFLKGMCLYLNS----LRQKRPKLLKEG-DGIVGN  220 (380)
Q Consensus       154 ~~---~~~---~~~~~il~~l~~~~~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~----~~~~~~~~~~~~-~~i~~~  220 (380)
                      +.   ...   ....|+++.+   .++..+...++  |.+++++.++..+...+...    +.......+.+. ..++++
T Consensus       179 ~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  255 (448)
T PRK14357        179 PKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYD  255 (448)
T ss_pred             HhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccc
Confidence            32   110   1122455555   24778888888  66777988887664433221    111111223332 356777


Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW  300 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~  300 (380)
                      +.|++++.|++++.|++++.||++|.|++++.|.+|+||++|.|. .+.+.+++|++++.|++++.+..     ++.+|+
T Consensus       256 ~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~-----~~~ig~  329 (448)
T PRK14357        256 VEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLRE-----GTVLKK  329 (448)
T ss_pred             eEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECC-----cccccC
Confidence            888888888888888888888999999999988889999999885 46777888888888888888843     344445


Q ss_pred             cceeCcceEE-----------ccceEECCCeEECcceEEcCCeeec--------ceeecCc-----ceeecceeEecCce
Q psy9164         301 KCVVGQWVRM-----------ENITVLGEDVIVQDELYVNGGQVLP--------HKSIGSS-----LHMLGEDVIVQDEL  356 (380)
Q Consensus       301 ~~~ig~~~~i-----------~~~~~ig~~~~ig~~~~i~~~~v~~--------~~~i~~~-----~~~~~~~v~i~~~~  356 (380)
                      ++.||+++.+           .+.+.++ ++.||+++.|++++++.        +.+||++     .+.+.++++||+++
T Consensus       330 ~~~Ig~~~~i~~~~ig~~~~~~~~~~~~-~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~  408 (448)
T PRK14357        330 SVKIGNFVEIKKSTIGENTKAQHLTYLG-DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGA  408 (448)
T ss_pred             CcEecCceeeeccEEcCCcCcccccccc-CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCC
Confidence            4444444433           2222221 34555555555554331        2344443     23345678899999


Q ss_pred             EEeceeeeccccccCCCCCCCcc
Q psy9164         357 YVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       357 ~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .||+|++     |++|+|+++++
T Consensus       409 ~i~ag~~-----v~~~v~~~~~~  426 (448)
T PRK14357        409 LIGAGSV-----ITEDVPPYSLA  426 (448)
T ss_pred             EEcCCCE-----ECCcCCCCcEE
Confidence            9999999     99999999876

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=6.6e-39  Score=301.70  Aligned_cols=300  Identities=23%  Similarity=0.369  Sum_probs=225.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccccc----CCcEEEEe-------ecCCCCCCchHHHHhHHhhCCC-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKK----LGISLVFS-------HENEPLGTAGPLALAKDILNKS-   68 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~----~~~~i~~~-------~~~~~~gt~~al~~a~~~i~~~-   68 (380)
                      ||+|+|++|.++|+++|+|+++|+.+++++|+.+.+..    .+..+.+.       .+++.+||+++++++++++.+. 
T Consensus        49 lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~  128 (425)
T PRK00725         49 IIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYD  128 (425)
T ss_pred             EhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999752211    11122211       2334689999999999999532 


Q ss_pred             CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCC-------CCCeEE
Q psy9164          69 QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEF-------VSNKIN  139 (380)
Q Consensus        69 ~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~-------~~~~~~  139 (380)
                      +++|+|++||++++.++.++++.|+++++++|+++.+.  +++..||++..|+++++..|.|||...       .+.+++
T Consensus       129 ~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~~~~~~~~~l~n  208 (425)
T PRK00725        129 PKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLAS  208 (425)
T ss_pred             CCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEECCCCccccccCccceEEE
Confidence            35799999999999999999999999999999988765  567899999999889999999998643       257999


Q ss_pred             EEEEEeCHhHHh-hccC------CCCCcccchhhhhhcCCcEEEEEec-----------cEEEecCChhhHHHHHHHHHh
Q psy9164         140 AGMYIFNPSVLD-RIEI------KPTSIEKEIFPLMSKEKQLYAMELK-----------GFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       140 ~giyi~~~~~l~-~l~~------~~~~~~~~il~~l~~~~~i~~~~~~-----------~~~~~i~~~~~~~~a~~~~l~  201 (380)
                      +|+|+|++++|. .+..      ...++..++++.+++++++++|.+.           ++|.+++++++|++++..++.
T Consensus       209 ~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~  288 (425)
T PRK00725        209 MGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS  288 (425)
T ss_pred             eeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence            999999999874 4532      2234667899999999999999886           599999999999999988875


Q ss_pred             hhcccCcccccCCCccccceeeCCCCEE---CCCcE-ECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcC
Q psy9164         202 SLRQKRPKLLKEGDGIVGNVLVDPTATI---GPGCR-IGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW  277 (380)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~~~-i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~  277 (380)
                      .....  ..+.....+.......+.+.+   +.++. +..+++||++|.| ++|.|.+|+|+++|.|+++|.|.+|+|++
T Consensus       289 ~~~~~--~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~  365 (425)
T PRK00725        289 VTPEL--DLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLP  365 (425)
T ss_pred             CCchh--hccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcC
Confidence            32110  111112222211112222222   12211 2247889999998 78888899999999999999999999999


Q ss_pred             CCEECCceEEeeeeEecceEECccceeCcceE
Q psy9164         278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVR  309 (380)
Q Consensus       278 ~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~  309 (380)
                      +|.|+++|.|      .++++++++.|++++.
T Consensus       366 ~~~I~~~~~i------~~~ii~~~~~i~~~~~  391 (425)
T PRK00725        366 DVNVGRSCRL------RRCVIDRGCVIPEGMV  391 (425)
T ss_pred             CCEECCCCEE------eeEEECCCCEECCCCE
Confidence            9999999888      4455555555554433

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=2.8e-38  Score=302.08  Aligned_cols=360  Identities=21%  Similarity=0.363  Sum_probs=257.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|++++++++++..+++.+++.+.   .  .+.+..++...|++++++.+.+++.+.++++++++||. 
T Consensus        31 li~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~---~--~i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P  105 (450)
T PRK14360         31 LVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL---P--GLEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVP  105 (450)
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc---C--CeEEEEeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCcc
Confidence            68999999999999999999999999999998652   1  34455567788999999999998853346799999998 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC----CCCCCeEEEEEEEeCHhHHhhc-
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ----EFVSNKINAGMYIFNPSVLDRI-  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~----~~~~~~~~~giyi~~~~~l~~l-  153 (380)
                       +.+.+++++++.|++.++.++++..+.+++..||.+..|+++++.++.|||.    ...+++.++|+|+|+++.|..+ 
T Consensus       106 ~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~  185 (450)
T PRK14360        106 LLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVL  185 (450)
T ss_pred             ccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHH
Confidence             6677899999999998888888888888888899999988899999999975    3456899999999999877553 


Q ss_pred             cCCC---CC---cccchhhhhhcCCcEEEEEeccE--EEecCChhhHHHHHHHHHhhhc----ccCcccccCCC-ccccc
Q psy9164         154 EIKP---TS---IEKEIFPLMSKEKQLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLR----QKRPKLLKEGD-GIVGN  220 (380)
Q Consensus       154 ~~~~---~~---~~~~il~~l~~~~~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~-~i~~~  220 (380)
                      +...   ..   ...+.++.+.   .+..++..+.  |..++++.++..+...+.....    ......+.+.. .+.++
T Consensus       186 ~~~~~~~~~~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~  262 (450)
T PRK14360        186 PKLSSNNDQKEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISET  262 (450)
T ss_pred             hhccccccCCceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCC
Confidence            2211   11   1123444442   2455556554  5669999998777555433222    21122344443 47778


Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW  300 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~  300 (380)
                      +++++++.|++++.|++++.||++|.|++++.|.+++|+++|.|+ .+.+.+++||+++.|+++|.|.+     ++.||+
T Consensus       263 ~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~-----~~~Ig~  336 (450)
T PRK14360        263 VELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRP-----EAQIGS  336 (450)
T ss_pred             EEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECC-----CCEEeC
Confidence            888888888888888888999999999999999888888888885 45667777777777777777742     344444


Q ss_pred             cceeCcceEEc-----------cc-----eEECCCeEECcceEEcC-------Ceeec-ceeecCcceeecceeEecCce
Q psy9164         301 KCVVGQWVRME-----------NI-----TVLGEDVIVQDELYVNG-------GQVLP-HKSIGSSLHMLGEDVIVQDEL  356 (380)
Q Consensus       301 ~~~ig~~~~i~-----------~~-----~~ig~~~~ig~~~~i~~-------~~v~~-~~~i~~~~~~~~~~v~i~~~~  356 (380)
                      ++.||+++.+.           +.     +.||++|.||+++.+..       ++++. +..||.++ ++.++++||+++
T Consensus       337 ~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~-~i~~~~~ig~~~  415 (450)
T PRK14360        337 NCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANS-VLVAPITLGEDV  415 (450)
T ss_pred             ceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCC-EEeCCcEECCCC
Confidence            44444444332           21     33444444444444421       12222 23444444 456788999999


Q ss_pred             EEeceeeeccccccCCCCCCCccC
Q psy9164         357 YVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       357 ~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      +|++|++     |++|+|++++++
T Consensus       416 ~v~~~~~-----v~~~~~~~~~~~  434 (450)
T PRK14360        416 TVAAGST-----ITKDVPDNSLAI  434 (450)
T ss_pred             EECCCCE-----ECccCCCCCEEE
Confidence            9999999     999999998863

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=1.6e-37  Score=288.32  Aligned_cols=300  Identities=21%  Similarity=0.335  Sum_probs=229.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCC---cEEEEee-------cCCCCCCchHHHHhHHhhCCC-C
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLG---ISLVFSH-------ENEPLGTAGPLALAKDILNKS-Q   69 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~---~~i~~~~-------~~~~~gt~~al~~a~~~i~~~-~   69 (380)
                      ||+|+|++|.++|+++|+|+++++.+++++|+.+.+....   ..+++..       +++.+||+++++.+.+++.+. .
T Consensus        32 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~  111 (361)
T TIGR02091        32 IIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDP  111 (361)
T ss_pred             EeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999975221111   1223221       223589999999999998432 3


Q ss_pred             CcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCCCC-------eEEE
Q psy9164          70 EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSN-------KINA  140 (380)
Q Consensus        70 ~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~-------~~~~  140 (380)
                      ++|++++||++++.++.++++.|+++++++++++.+.  +++..||++..|+++++.+|.|||......       +.++
T Consensus       112 ~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~~~~  191 (361)
T TIGR02091       112 EYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANPPSIPGMPDFALASM  191 (361)
T ss_pred             CEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECCCCcccccccccccEEee
Confidence            6799999999999999999999998888888887765  356789999998888999999998655555       8999


Q ss_pred             EEEEeCHhHH-hhccC------CCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccC
Q psy9164         141 GMYIFNPSVL-DRIEI------KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKE  213 (380)
Q Consensus       141 giyi~~~~~l-~~l~~------~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~  213 (380)
                      |+|+|++++| +.+..      ...++..++++.++++++++++.++++|.+++++++|++++..++.+.....  .+..
T Consensus       192 Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~  269 (361)
T TIGR02091       192 GIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDR  269 (361)
T ss_pred             eEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--cccc
Confidence            9999999987 44432      2334556899999999999999999999999999999999988886543211  1111


Q ss_pred             CCccc-cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeE
Q psy9164         214 GDGIV-GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITV  292 (380)
Q Consensus       214 ~~~i~-~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~  292 (380)
                      ...+. ....+.+++.+++++.+ +++.||++|+|+++ .+.+++++++|.|+++|+|.+|++++++.|++++.+     
T Consensus       270 ~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-----  342 (361)
T TIGR02091       270 KWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-----  342 (361)
T ss_pred             CCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-----
Confidence            22221 22345556666666655 47888999999876 788999999999999999999999999999998888     


Q ss_pred             ecceEECccceeCcceEE
Q psy9164         293 LGECIIGWKCVVGQWVRM  310 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i  310 (380)
                       .++++|+++.|+.++.|
T Consensus       343 -~~~ivg~~~~i~~~~~i  359 (361)
T TIGR02091       343 -RNAIIDKNVRIGEGVVI  359 (361)
T ss_pred             -eeeEECCCCEECCCCEe
Confidence             45555555555554433

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=8.2e-38  Score=290.82  Aligned_cols=298  Identities=20%  Similarity=0.352  Sum_probs=217.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHccccccCCcEE-------EEeecCCCC--CCchHHHHhHHhhCC-CC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAE-QMEDELTVETKKLGISL-------VFSHENEPL--GTAGPLALAKDILNK-SQ   69 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i-------~~~~~~~~~--gt~~al~~a~~~i~~-~~   69 (380)
                      ||+|+|++|.++|+++|+++++|+.+ ++++|+.+ ...|++++       .+..++..+  |++++++.+++++.. .+
T Consensus        36 lIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~  114 (369)
T TIGR02092        36 LIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTS  114 (369)
T ss_pred             EEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCC
Confidence            68999999999999999999999886 99999976 34555553       233333444  455568889998832 14


Q ss_pred             CcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCcee-EEEECCCCceeEEEeCCCCCCCCeEEEEEEEeC
Q psy9164          70 EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYG-VVLYNEHGCIESFIEKPQEFVSNKINAGMYIFN  146 (380)
Q Consensus        70 ~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g-~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~  146 (380)
                      ++|||++||++++.+|.+++++|+++++.+|+++.+.+  ++..|| .+..++++++..+.+++.......+++|+|+|+
T Consensus       115 ~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~~~~~~~Giyi~~  194 (369)
T TIGR02092       115 EYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEEEENISLDIYIVS  194 (369)
T ss_pred             CEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCCcceeeeeEEEEE
Confidence            67999999999999999999999999999999998865  567775 455666778877754433333467899999999


Q ss_pred             HhHHh-hcc----CCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccc-cCCCccccc
Q psy9164         147 PSVLD-RIE----IKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLL-KEGDGIVGN  220 (380)
Q Consensus       147 ~~~l~-~l~----~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~-~~~~~i~~~  220 (380)
                      ++++. .+.    .....+..++++.+++..+++++...++|.+++++++|.+++..+++.....  ..+ .....+...
T Consensus       195 ~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~--~~~~~~~~~~~~~  272 (369)
T TIGR02092       195 TDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQ--SLFYSSQGPIYTK  272 (369)
T ss_pred             HHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchh--hhcCCCCCceeec
Confidence            99763 332    2222233468888887789999999999999999999999998888664321  111 111112111


Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW  300 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~  300 (380)
                      ..+.+++.|++++.| ++++||++|.|+  +.+.+|+|+++|.|+++|.|.++++++++.|++++.+      .++++|+
T Consensus       273 ~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i------~~~ii~~  343 (369)
T TIGR02092       273 VKDEPPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHL------ENVIIDK  343 (369)
T ss_pred             cCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEE------EEEEECC
Confidence            123366777777777 578888888886  3578888999999999998888888888888888888      4455555


Q ss_pred             cceeCcceEE
Q psy9164         301 KCVVGQWVRM  310 (380)
Q Consensus       301 ~~~ig~~~~i  310 (380)
                      ++.|++++.+
T Consensus       344 ~~~v~~~~~~  353 (369)
T TIGR02092       344 DVVIEPNVKI  353 (369)
T ss_pred             CCEECCCCEe
Confidence            5555554444

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>KOG1461|consensus

Probab=100.00  E-value=1.6e-36  Score=278.25  Aligned_cols=326  Identities=17%  Similarity=0.229  Sum_probs=252.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc--ccCCcEEEEeecCCCCCCchHHHH--hHHhhCCCCCcEEEEe
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET--KKLGISLVFSHENEPLGTAGPLAL--AKDILNKSQEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~--~~~~~~i~~~~~~~~~gt~~al~~--a~~~i~~~~~~~lv~~   76 (380)
                      ||+|+|++|.++|+++|+|+++.++.++++|+++..  .++...+..+...+....+++++.  .+..+   .+||++++
T Consensus        57 mIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~li---tgDFiLVs  133 (673)
T KOG1461|consen   57 MIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLI---TGDFILVS  133 (673)
T ss_pred             HHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhccee---ecceEEEe
Confidence            799999999999999999999999999999998831  223334444444555666666664  45555   89999999


Q ss_pred             CCcccCCChHHHHHHHHhc-----CCcEEEEEEEcC---CCCceeEEEEC-CCCceeEEEe----C-----C--------
Q psy9164          77 SDIICDFPFKDLVSFHKNH-----GKEGTIVVTQVE---EPSKYGVVLYN-EHGCIESFIE----K-----P--------  130 (380)
Q Consensus        77 gD~i~~~~l~~~l~~h~~~-----~~~~tl~~~~~~---~~~~~g~v~~d-~~~~v~~~~e----k-----~--------  130 (380)
                      ||+++|.+|+++++.|+++     ++.||+++++..   .... -.+.+| .+.|+..+.+    +     +        
T Consensus       134 gd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~-~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~  212 (673)
T KOG1461|consen  134 GDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQ-VVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSND  212 (673)
T ss_pred             CCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcc-eEEEEcCCcceEEeehhhcccccccccCHHHhcCCC
Confidence            9999999999999999653     367899888762   2222 345555 5678888864    1     1        


Q ss_pred             C-CCCCCeEEEEEEEeCHhHHhhccCCCC-Ccccchhhhh----hcCCcEEEEEecc--EEEecCChhhHHHHHHHHHhh
Q psy9164         131 Q-EFVSNKINAGMYIFNPSVLDRIEIKPT-SIEKEIFPLM----SKEKQLYAMELKG--FWMDVGQPRDFLKGMCLYLNS  202 (380)
Q Consensus       131 ~-~~~~~~~~~giyi~~~~~l~~l~~~~~-~~~~~il~~l----~~~~~i~~~~~~~--~~~~i~~~~~~~~a~~~~l~~  202 (380)
                      . ..+.++.+++|.+||+.++..|.++.. +...|++.-+    +-..+++.+....  |...+.+...|.......+.+
T Consensus       213 ~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~R  292 (673)
T KOG1461|consen  213 EVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQR  292 (673)
T ss_pred             cEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHh
Confidence            1 234588899999999999999987642 2333433222    2234788887765  778888888888777888877


Q ss_pred             hc-ccCccc-ccCCC---ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcC
Q psy9164         203 LR-QKRPKL-LKEGD---GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW  277 (380)
Q Consensus       203 ~~-~~~~~~-~~~~~---~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~  277 (380)
                      +. +..|.. +....   .-..+.|-++.+.++..+.++.++.||.++.||.++.|.||+||.+|.||.+++|.++.|++
T Consensus       293 W~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~  372 (673)
T KOG1461|consen  293 WTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWN  372 (673)
T ss_pred             hcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeec
Confidence            63 222221 11111   12256777889999999999999999999999999999999999999999999999999999


Q ss_pred             CCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc
Q psy9164         278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH  336 (380)
Q Consensus       278 ~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~  336 (380)
                      +|+||+||.|      ++++|++++.|++++.+.+++++|.++++|++-.+..++++.+
T Consensus       373 ~v~Igdnc~I------~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~~~  425 (673)
T KOG1461|consen  373 NVTIGDNCRI------DHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQ  425 (673)
T ss_pred             CcEECCCceE------eeeEeecCcEeCCCcccCCCcEEeeeeEeCCCccccccccccC
Confidence            9999999999      8899999999999999999999999999999988888765533

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.4e-32  Score=228.69  Aligned_cols=199  Identities=26%  Similarity=0.515  Sum_probs=178.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|.|+.|..+|+++|.|++++ ....+++++.+ +++|+++++|..|+++.|-|+|+..++++++  +++|+++.||.
T Consensus        33 mi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~--~~~f~l~LGDN  109 (286)
T COG1209          33 MIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAVQPEPDGLAHAVLIAEDFVG--DDDFVLYLGDN  109 (286)
T ss_pred             hhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEecCCCCcHHHHHHHHHhhcC--CCceEEEecCc
Confidence            79999999999999999999998 67888888887 7899999999999999999999999999996  79999999998


Q ss_pred             ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCC
Q psy9164          80 ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTS  159 (380)
Q Consensus        80 i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~  159 (380)
                      ++..++.++++.+.++.++.++++.++++|++||++.+|++++++.+.|||..+.++++-+|+|+|++++|+.++.-..+
T Consensus       110 i~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS  189 (286)
T COG1209         110 IFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPS  189 (286)
T ss_pred             eeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCC
Confidence            76669999999999988899999999999999999999988999999999999999999999999999999988654333


Q ss_pred             cc-----cchhhhhhcCCc-EEEEEeccEEEecCChhhHHHHHHHHHhh
Q psy9164         160 IE-----KEIFPLMSKEKQ-LYAMELKGFWMDVGQPRDFLKGMCLYLNS  202 (380)
Q Consensus       160 ~~-----~~il~~l~~~~~-i~~~~~~~~~~~i~~~~~~~~a~~~~l~~  202 (380)
                      .+     .|..+.++++++ .......|+|.|.|+++++++|+...+..
T Consensus       190 ~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~  238 (286)
T COG1209         190 ARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTV  238 (286)
T ss_pred             CCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHH
Confidence            32     346888888885 45556678999999999999998777663

>KOG1462|consensus

Probab=100.00  E-value=1.1e-31  Score=233.11  Aligned_cols=303  Identities=21%  Similarity=0.312  Sum_probs=186.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcE---EEEee-cCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164           1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGIS---LVFSH-ENEPLGTAGPLALAKDILNKSQEPFFVL   75 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~---i~~~~-~~~~~gt~~al~~a~~~i~~~~~~~lv~   75 (380)
                      ||||+|++|.++|++++.|++.. ....+++.+.+. ....++   +.+.. ..+..||+++|+.....+.  .+|||++
T Consensus        42 Mi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~-~~l~~~~~~v~ip~~~~~d~gtadsLr~Iy~kik--S~Dflvl  118 (433)
T KOG1462|consen   42 MILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSN-IDLKKRPDYVEIPTDDNSDFGTADSLRYIYSKIK--SEDFLVL  118 (433)
T ss_pred             eeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcC-CcccccccEEEeecccccccCCHHHHhhhhhhhc--cCCEEEE
Confidence            79999999999999999999987 457788888662 122222   22221 2347799999999999994  5699999


Q ss_pred             eCCcccCCChHHHHHHHHhcCCcEEEEEEEcC-----------CCCceeEEEECCCCceeEEEeC---------------
Q psy9164          76 NSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE-----------EPSKYGVVLYNEHGCIESFIEK---------------  129 (380)
Q Consensus        76 ~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~-----------~~~~~g~v~~d~~~~v~~~~ek---------------  129 (380)
                      .||.+++.++..++++++..++.+.+++....           ....+.++..+++..-+-|...               
T Consensus       119 sCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL  198 (433)
T KOG1462|consen  119 SCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLL  198 (433)
T ss_pred             ecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhh
Confidence            99999999999999999988765554443211           1112233444433322233211               


Q ss_pred             ---CC-CCCCCeEEEEEEEeCHhHHhhccC--CCCCcccchhhhhhcCCc------------------------------
Q psy9164         130 ---PQ-EFVSNKINAGMYIFNPSVLDRIEI--KPTSIEKEIFPLMSKEKQ------------------------------  173 (380)
Q Consensus       130 ---~~-~~~~~~~~~giyi~~~~~l~~l~~--~~~~~~~~il~~l~~~~~------------------------------  173 (380)
                         |. ...+++.++++|+|+.+++++|.+  ...++..+++|+|++++.                              
T Consensus       199 ~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d  278 (433)
T KOG1462|consen  199 WNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDD  278 (433)
T ss_pred             hcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCccc
Confidence               22 445688999999999999999974  457788888888865432                              


Q ss_pred             ---EEEEEe--ccEEEecCChhhHHHHHH-HHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEE
Q psy9164         174 ---LYAMEL--KGFWMDVGQPRDFLKGMC-LYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVI  247 (380)
Q Consensus       174 ---i~~~~~--~~~~~~i~~~~~~~~a~~-~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i  247 (380)
                         ++++..  +..+..+++...|+++++ ..+..+...... .....           .   ..+.++..++++++|.|
T Consensus       279 ~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~-~k~~~-----------~---~~~l~g~d~iv~~~t~i  343 (433)
T KOG1462|consen  279 RIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKF-VKNYV-----------K---KVALVGADSIVGDNTQI  343 (433)
T ss_pred             ceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhcccccc-ccchh-----------h---heeccchhhccCCCcee
Confidence               233333  334667888888998884 122222221110 00000           0   00233344455555555


Q ss_pred             cCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceE
Q psy9164         248 EGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELY  327 (380)
Q Consensus       248 ~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~  327 (380)
                      ++++.|..|+||.+|.||+.+.+.+|+++++++||+++.|      .+|+||.++.||.++.+.+ |.||.+=+|.+...
T Consensus       344 ~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I------ensIIg~gA~Ig~gs~L~n-C~Ig~~yvVeak~~  416 (433)
T KOG1462|consen  344 GENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNI------ENSIIGMGAQIGSGSKLKN-CIIGPGYVVEAKGK  416 (433)
T ss_pred             cccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcce------ecceecccceecCCCeeee-eEecCCcEEccccc
Confidence            5555555555555555555555555555555555555555      5555555555555555544 55555555544333


Q ss_pred             E
Q psy9164         328 V  328 (380)
Q Consensus       328 i  328 (380)
                      .
T Consensus       417 ~  417 (433)
T KOG1462|consen  417 H  417 (433)
T ss_pred             c
Confidence            3

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.97  E-value=1.3e-29  Score=220.89  Aligned_cols=200  Identities=69%  Similarity=1.143  Sum_probs=180.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|+++++|+++++.+++++|+.+...+.++++.+..+.+..||+++++.+++++...+++|++++||++
T Consensus        33 li~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~  112 (233)
T cd06425          33 MIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVI  112 (233)
T ss_pred             hHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEe
Confidence            68999999999999999999999999999999864345678887877788899999999999999533478999999999


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECC-CCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCC
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE-HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTS  159 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~  159 (380)
                      ++.+++++++.|+++++++|+++.+.+++..||++..|+ +++|.++.|||....++++++|+|+|++++|+.+.....+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~  192 (233)
T cd06425         113 CDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTS  192 (233)
T ss_pred             eCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccCccc
Confidence            999999999999999999999999888888999999987 7899999999987778999999999999999998776667


Q ss_pred             cccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHH
Q psy9164         160 IEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       160 ~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l  200 (380)
                      ++.++++.+++++++.++.++++|.+++++++|.++++.+|
T Consensus       193 ~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l  233 (233)
T cd06425         193 IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL  233 (233)
T ss_pred             chhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence            77889999999999999999999999999999999987664

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.97  E-value=5.5e-29  Score=220.11  Aligned_cols=198  Identities=32%  Similarity=0.649  Sum_probs=173.3

Q ss_pred             CHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC-CCcEEEEeCC
Q psy9164           1 MLLHQIEALVE-AGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS-QEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~-~~~~lv~~gD   78 (380)
                      ||+|+|++|.+ +|+++|+|++++..+++.+|+.+..+.+++.+.+..+++.+||+++++.+++++... .++|+|++||
T Consensus        33 lI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD  112 (257)
T cd06428          33 MIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNAD  112 (257)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCC
Confidence            69999999999 699999999999999999999874445678888888888999999999999998432 4679999999


Q ss_pred             cccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEEC-CCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC
Q psy9164          79 IICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYN-EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI  155 (380)
Q Consensus        79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~  155 (380)
                      ++++.+++++++.|+++++++|+++.+.  +++..||++..| ++++|..+.|||....++++++|+|+|++++|+.+..
T Consensus       113 ~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~  192 (257)
T cd06428         113 VCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKK  192 (257)
T ss_pred             eecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhh
Confidence            9999999999999999999999988876  457889999988 6789999999998878899999999999999987752


Q ss_pred             ---------------------CCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         156 ---------------------KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       156 ---------------------~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                                           ...++..++++.++++++++++.++++|.+++++++|.++++.
T Consensus       193 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~  256 (257)
T cd06428         193 AFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL  256 (257)
T ss_pred             hccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence                                 1123446899999999999999999999999999999998764

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.96  E-value=1.7e-27  Score=212.35  Aligned_cols=197  Identities=21%  Similarity=0.420  Sum_probs=164.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc---------------------ccCCcEEEEeecCCCCCCchHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET---------------------KKLGISLVFSHENEPLGTAGPLA   59 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~---------------------~~~~~~i~~~~~~~~~gt~~al~   59 (380)
                      ||+|+|++|.++|+++|+|+++|+++++++|+....                     .++++++.+..|++.+||++|++
T Consensus        36 iI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~  115 (297)
T TIGR01105        36 MIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSIL  115 (297)
T ss_pred             HHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHH
Confidence            689999999999999999999999999999996521                     03467889999999999999999


Q ss_pred             HhHHhhCCCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEEC----CCCc---ee
Q psy9164          60 LAKDILNKSQEPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN----EHGC---IE  124 (380)
Q Consensus        60 ~a~~~i~~~~~~~lv~~gD~i~~--------~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d----~~~~---v~  124 (380)
                      +|+++++  +++|+|++||.+++        ++++++++.|+++++.++++....+++.+||++..+    ++++   |.
T Consensus       116 ~a~~~l~--~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~  193 (297)
T TIGR01105       116 CARPVVG--DNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIV  193 (297)
T ss_pred             HHHHHhC--CCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCccceEEEecccccCCCCeeeEe
Confidence            9999995  57899999999887        589999999987777665544444578999999984    3564   58


Q ss_pred             EEEeCCCCC---CCCeEEEEEEEeCHhHHhhccCCC-CCc----ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHH
Q psy9164         125 SFIEKPQEF---VSNKINAGMYIFNPSVLDRIEIKP-TSI----EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       125 ~~~ek~~~~---~~~~~~~giyi~~~~~l~~l~~~~-~~~----~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~  196 (380)
                      ++.|||..+   .++++++|+|+|++++|+.++... ...    ..++++.++++++++++.+.++|.|+|+|++|++++
T Consensus       194 ~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~  273 (297)
T TIGR01105       194 EFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAF  273 (297)
T ss_pred             EEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHH
Confidence            999998743   579999999999999999885422 111    237889999999999999999999999999999997


Q ss_pred             HHH
Q psy9164         197 CLY  199 (380)
Q Consensus       197 ~~~  199 (380)
                      ..+
T Consensus       274 ~~~  276 (297)
T TIGR01105       274 VKY  276 (297)
T ss_pred             HHH
Confidence            654

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PRK10122 GalU regulator GalF; Provisional

Probab=99.95  E-value=1.7e-26  Score=206.51  Aligned_cols=197  Identities=20%  Similarity=0.416  Sum_probs=165.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc---------------------cCCcEEEEeecCCCCCCchHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK---------------------KLGISLVFSHENEPLGTAGPLA   59 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~---------------------~~~~~i~~~~~~~~~gt~~al~   59 (380)
                      ||+|+|++|.++|+++|+|+++++++++.+|+...+.                     +.++++.+..|++++||+++++
T Consensus        36 iI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~  115 (297)
T PRK10122         36 MIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSIL  115 (297)
T ss_pred             HHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEeecCCcCchHHHHH
Confidence            6899999999999999999999999999999964210                     2367888999999999999999


Q ss_pred             HhHHhhCCCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEEC----CCC---cee
Q psy9164          60 LAKDILNKSQEPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN----EHG---CIE  124 (380)
Q Consensus        60 ~a~~~i~~~~~~~lv~~gD~i~~--------~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d----~~~---~v~  124 (380)
                      ++++++.  +++|+|++||.+++        +|++++++.|.+++++++++....+++..||.+..+    +++   +|.
T Consensus       116 ~a~~~l~--~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~~~yGvv~~d~~~~~~g~v~~I~  193 (297)
T PRK10122        116 CARPAIG--DNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIV  193 (297)
T ss_pred             HHHHHcC--CCCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCCCCceEEEecCcccCCCCeeeEE
Confidence            9999994  57899999999886        589999999998887755555444678899999986    355   688


Q ss_pred             EEEeCCCCC---CCCeEEEEEEEeCHhHHhhccCCC-C----CcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHH
Q psy9164         125 SFIEKPQEF---VSNKINAGMYIFNPSVLDRIEIKP-T----SIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       125 ~~~ek~~~~---~~~~~~~giyi~~~~~l~~l~~~~-~----~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~  196 (380)
                      +|.|||...   .++++++|+|+|++++|+.+.... .    ....++++.++++++++++.+.|+|.|+|+|++|++++
T Consensus       194 ~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~  273 (297)
T PRK10122        194 EFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAF  273 (297)
T ss_pred             EEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHH
Confidence            999998744   378999999999999998885421 1    12236888999999999999999999999999999998


Q ss_pred             HHH
Q psy9164         197 CLY  199 (380)
Q Consensus       197 ~~~  199 (380)
                      ..+
T Consensus       274 ~~~  276 (297)
T PRK10122        274 VKY  276 (297)
T ss_pred             HHH
Confidence            776

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.95  E-value=7.5e-27  Score=205.85  Aligned_cols=200  Identities=36%  Similarity=0.675  Sum_probs=169.8

Q ss_pred             CHHHHHHHHHHcCCCEE-EEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC--CCcEEEEeC
Q psy9164           1 MLLHQIEALVEAGVREV-ILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS--QEPFFVLNS   77 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i-~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~--~~~~lv~~g   77 (380)
                      ||+|+|++|.++|++++ +|+.+++.+++.+++++ ...+++++.++.+++..||+++++++++++...  +++|++++|
T Consensus        33 li~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~g  111 (248)
T PF00483_consen   33 LIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-GYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNG  111 (248)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-SGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETT
T ss_pred             chhhhhhhhcccCCceEEEEEeecccccccccccc-cccccccceeeecccccchhHHHHHHHHHhhhccccceEEEEec
Confidence            68999999999999995 55455889999999988 455678999999999999999999999999521  124999999


Q ss_pred             CcccCCChHHHHHHHHhcCC--cEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCC-CCeEEEEEEEeCHhHHhhcc
Q psy9164          78 DIICDFPFKDLVSFHKNHGK--EGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFV-SNKINAGMYIFNPSVLDRIE  154 (380)
Q Consensus        78 D~i~~~~l~~~l~~h~~~~~--~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~-~~~~~~giyi~~~~~l~~l~  154 (380)
                      |++++.++.++++.|+++++  .+++...+.+++.+||++..|++++|.+|.|||.... ++++++|+|+|++++|+.+.
T Consensus       112 D~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~  191 (248)
T PF00483_consen  112 DIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLL  191 (248)
T ss_dssp             EEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHH
T ss_pred             cccccchhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccceeccCceEEEcchHHHHHh
Confidence            99999999999999999988  5677777778889999999999899999999999776 89999999999999998872


Q ss_pred             ----C--CCCCcccchhhhhhcCC-cEEEEEecc--EEEecCChhhHHHHHHHHHh
Q psy9164         155 ----I--KPTSIEKEIFPLMSKEK-QLYAMELKG--FWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       155 ----~--~~~~~~~~il~~l~~~~-~i~~~~~~~--~~~~i~~~~~~~~a~~~~l~  201 (380)
                          .  ....+..++++.+++++ .+.++...+  +|.|+|+|++|++|+..+++
T Consensus       192 ~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  192 EMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             HHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             hhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence                1  23334567899999887 455778888  79999999999999877653

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.95  E-value=3.9e-26  Score=200.87  Aligned_cols=194  Identities=26%  Similarity=0.449  Sum_probs=164.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc-cCCcEE-------------------EEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-KLGISL-------------------VFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-~~~~~i-------------------~~~~~~~~~gt~~al~~   60 (380)
                      ||+|+|++|.++|+++|+|+++|+.+++.+++.+... ..++++                   .+..+.+.+||++++++
T Consensus        32 ii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~  111 (254)
T TIGR02623        32 ILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKR  111 (254)
T ss_pred             HHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecccccccccccCCccceeeeecCCcCCcHHHHHH
Confidence            6899999999999999999999999999999975211 012222                   23445567999999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEE
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA  140 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~  140 (380)
                      +++++.  +++|++++||++++.+++++++.|++.++++|++..  +++..||.+..|+ +++..|.|||... ++++++
T Consensus       112 ~~~~i~--~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~~~~yG~v~~d~-~~V~~~~Ekp~~~-~~~i~~  185 (254)
T TIGR02623       112 VREYLD--DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QPPGRFGALDLEG-EQVTSFQEKPLGD-GGWING  185 (254)
T ss_pred             HHHhcC--CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEECC-CeEEEEEeCCCCC-CCeEEE
Confidence            999994  578999999999999999999999999998887654  5678899998875 6899999998643 678999


Q ss_pred             EEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHH
Q psy9164         141 GMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       141 giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l  200 (380)
                      |+|+|++++|+.++....++..++++.++++++++++.++++|.+++++.+|.+++..+.
T Consensus       186 Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~  245 (254)
T TIGR02623       186 GFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWE  245 (254)
T ss_pred             EEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHH
Confidence            999999999988877666777899999999999999999999999999999987765543

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.95  E-value=3.9e-26  Score=202.94  Aligned_cols=196  Identities=22%  Similarity=0.422  Sum_probs=168.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVS-YRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|..+|+++|+|++. ++.+.+++++.+ ++.+++++.+..|++++||+++++.++++++  +++|++++||.
T Consensus        32 mI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~--~~~~~li~gD~  108 (286)
T TIGR01207        32 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQPSPDGLAQAFIIGEDFIG--GDPSALVLGDN  108 (286)
T ss_pred             hHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEccCCCCHHHHHHHHHHHhC--CCCEEEEECCE
Confidence            7999999999999999998875 577899999977 5678999999999999999999999999995  57899999996


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC--
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK--  156 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~--  156 (380)
                       +++.++.++++.|.++++++|+++.+++++.+||++.+|+++++.++.|||..+.++++++|+|+|++++++.++.-  
T Consensus       109 i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~  188 (286)
T TIGR01207       109 IFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKP  188 (286)
T ss_pred             eccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCC
Confidence             67899999999998888889999999999999999999988999999999998889999999999999998877432  


Q ss_pred             --CCCcc-cchhhhhhcCCcEEEEEe-ccE-EEecCChhhHHHHHHHH
Q psy9164         157 --PTSIE-KEIFPLMSKEKQLYAMEL-KGF-WMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       157 --~~~~~-~~il~~l~~~~~i~~~~~-~~~-~~~i~~~~~~~~a~~~~  199 (380)
                        ...++ .++++.+++++++..... .++ |.|+|++++|.+++...
T Consensus       189 ~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~  236 (286)
T TIGR01207       189 SARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFI  236 (286)
T ss_pred             CCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence              12222 368888888887665555 575 99999999999996544

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.95  E-value=6.4e-26  Score=201.72  Aligned_cols=197  Identities=20%  Similarity=0.388  Sum_probs=168.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVS-YRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|+++|++++. +..+.+++++.+ .++|++++.|..|++++||++++..++++++  +++|++++||.
T Consensus        36 mI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~--~~~~~lv~gD~  112 (292)
T PRK15480         36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKVQPSPDGLAQAFIIGEEFIG--GDDCALVLGDN  112 (292)
T ss_pred             HHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEECCCCCCHHHHHHHHHHHhC--CCCEEEEECCe
Confidence            6999999999999999998765 467889999987 5678999999999999999999999999995  46799999996


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT  158 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~  158 (380)
                       +++.+++++++.|.++++++|+++.+++++.+||++.+|+++++++|.|||..+.++++++|+|+|++++++.++.-..
T Consensus       113 i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~  192 (292)
T PRK15480        113 IFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKP  192 (292)
T ss_pred             eeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCC
Confidence             5689999999999888888999988999999999999998899999999999888999999999999999988753211


Q ss_pred             C----c-ccchhhhhhcCCcEEE-EEecc-EEEecCChhhHHHHHHHHH
Q psy9164         159 S----I-EKEIFPLMSKEKQLYA-MELKG-FWMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       159 ~----~-~~~il~~l~~~~~i~~-~~~~~-~~~~i~~~~~~~~a~~~~l  200 (380)
                      +    + ..++++.+++++++.. +...+ .|.|+||++++.+|+..+.
T Consensus       193 ~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        193 SARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA  241 (292)
T ss_pred             CCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence            1    1 1367888888887654 45567 5999999999999976554

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.95  E-value=5.2e-26  Score=199.16  Aligned_cols=196  Identities=20%  Similarity=0.367  Sum_probs=168.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|+++|++++++ +.+++.+|+.+ .+.+++++.+..+++..||+++++.+++++.  .++|+|++||.
T Consensus        33 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~--~~~~lv~~gD~  109 (240)
T cd02538          33 MIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAVQPKPGGLAQAFIIGEEFIG--DDPVCLILGDN  109 (240)
T ss_pred             hHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEeeCCCCCCHHHHHHHHHHhcC--CCCEEEEECCE
Confidence            68999999999999999998875 56889999976 4567888888888888999999999999995  57899999996


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC--
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK--  156 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~--  156 (380)
                       +.+.++.++++.|+++++++|+++.+.+++..||.+..|++++|+++.|||....++++++|+|+|++++|+.++..  
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~  189 (240)
T cd02538         110 IFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKP  189 (240)
T ss_pred             EEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCC
Confidence             56778999999999888889999988888889999999988999999999988788899999999999999887521  


Q ss_pred             --CCCc-ccchhhhhhcCCcEEEEEec--cEEEecCChhhHHHHHHHH
Q psy9164         157 --PTSI-EKEIFPLMSKEKQLYAMELK--GFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       157 --~~~~-~~~il~~l~~~~~i~~~~~~--~~~~~i~~~~~~~~a~~~~  199 (380)
                        ...+ ..++++.+++++++.++.++  ++|.++++|++|.++++.+
T Consensus       190 ~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~  237 (240)
T cd02538         190 SARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV  237 (240)
T ss_pred             CCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence              1112 23688999988887777776  9999999999999997654

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.94  E-value=6e-25  Score=196.88  Aligned_cols=195  Identities=18%  Similarity=0.337  Sum_probs=164.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccC----------------------CcEEEEeecCCCCCCchHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKL----------------------GISLVFSHENEPLGTAGPL   58 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~----------------------~~~i~~~~~~~~~gt~~al   58 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+|+.+. ..+                      +..+.+..|.+.+||++++
T Consensus        41 ii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av  119 (302)
T PRK13389         41 LIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAV  119 (302)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhhhhhhhHHHHhhhhccccCceEEEeecCCCCChHHHH
Confidence            58999999999999999999999999999999752 111                      3466677778889999999


Q ss_pred             HHhHHhhCCCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECC-------CCce
Q psy9164          59 ALAKDILNKSQEPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE-------HGCI  123 (380)
Q Consensus        59 ~~a~~~i~~~~~~~lv~~gD~i~~--------~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~-------~~~v  123 (380)
                      +.++++++  +++|+|++||.+++        .+++++++.|++++++ ++++.+.+++..||++..++       ++++
T Consensus       120 ~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V  196 (302)
T PRK13389        120 LCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVADVTAYGVVDCKGVELAPGESVPM  196 (302)
T ss_pred             HHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEcccCCcceEEEecCcccccCCcceE
Confidence            99999985  57899999999864        7999999999888775 77778888889999998763       3479


Q ss_pred             eEEEeCCC--CCCCCeEEEEEEEeCHhHHhhccCCCC-----CcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHH
Q psy9164         124 ESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIEIKPT-----SIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       124 ~~~~ek~~--~~~~~~~~~giyi~~~~~l~~l~~~~~-----~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~  196 (380)
                      .+|.|||.  ...++++++|+|+|++++|+.++....     .+..++++.+.++++++++.++|+|.|+|+|++|++++
T Consensus       197 ~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~  276 (302)
T PRK13389        197 VGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF  276 (302)
T ss_pred             EEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHH
Confidence            99999997  456789999999999999988854221     12346889999888999999999999999999999997


Q ss_pred             HHH
Q psy9164         197 CLY  199 (380)
Q Consensus       197 ~~~  199 (380)
                      ..+
T Consensus       277 ~~~  279 (302)
T PRK13389        277 VEY  279 (302)
T ss_pred             HHH
Confidence            664

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.94  E-value=5.3e-25  Score=190.45  Aligned_cols=187  Identities=22%  Similarity=0.368  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecC-CCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN-EPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+|+.+  +.+++++.+..+. +.+||+++++.+++++.  +++|++++||+
T Consensus        32 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~--~~~~lv~~~D~  107 (221)
T cd06422          32 LIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEPDELLETGGGIKKALPLLG--DEPFLVVNGDI  107 (221)
T ss_pred             HHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCCCcccccHHHHHHHHHhcC--CCCEEEEeCCe
Confidence            6899999999999999999999999999999976  4578888888776 78899999999999995  47899999999


Q ss_pred             ccCCChHHHHHHHH--hcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164          80 ICDFPFKDLVSFHK--NHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP  157 (380)
Q Consensus        80 i~~~~l~~~l~~h~--~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~  157 (380)
                      +++.++.++++.|+  +.++.+++...+.+++..+|.+..|+++++..+.|+|..   +++++|+|+|+++++..+....
T Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~~  184 (221)
T cd06422         108 LWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLRRGGGGAVA---PFTFTGIQILSPELFAGIPPGK  184 (221)
T ss_pred             eeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEeecccCCCC---ceEEEEEEEEcHHHHhhCCcCc
Confidence            99999999999998  466677777777777788999999888999999988753   7899999999999998876542


Q ss_pred             CCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHH
Q psy9164         158 TSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       158 ~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                      . ...++++.++++++++++...++|.+++++++|.+|
T Consensus       185 ~-~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a  221 (221)
T cd06422         185 F-SLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA  221 (221)
T ss_pred             c-cHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence            2 234788999988999999999999999999998753

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.93  E-value=3.8e-24  Score=185.52  Aligned_cols=192  Identities=30%  Similarity=0.567  Sum_probs=169.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|++++|.++|+++++|+++++.+++.+++.+. ..++.++.+..+....|++++++.+++++.  .++|++++||.+
T Consensus        31 li~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~--~~~~lv~~~D~~  107 (223)
T cd06915          31 FLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPEPLGTGGAIKNALPKLP--EDQFLVLNGDTY  107 (223)
T ss_pred             hHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCCCCcchHHHHHHHhhcC--CCCEEEEECCcc
Confidence            68999999999999999999999999999999752 235667767777788999999999999984  678999999999


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCCc
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI  160 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~~  160 (380)
                      ++.++.++++.|++.+.++++++.+.+++..|+.+..|+++++..+.|||....+.+.++|+|+|++++|+.+.....++
T Consensus       108 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~  187 (223)
T cd06915         108 FDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPADAFSL  187 (223)
T ss_pred             cCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEEeCCCCCCCCcEEEEEEEECHHHHhhCCccCCCh
Confidence            99999999999988888888888888777889998888888999999998766778999999999999999886655566


Q ss_pred             ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHH
Q psy9164         161 EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       161 ~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                      +.++++.+++++++.++.+.++|.+++++++|.++
T Consensus       188 ~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a  222 (223)
T cd06915         188 EADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA  222 (223)
T ss_pred             HHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence            77899999988899999999999999999999865

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.93  E-value=6.1e-24  Score=185.82  Aligned_cols=197  Identities=27%  Similarity=0.495  Sum_probs=169.8

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|+++++|++++..+++++++.+ ..++++++.+..+++..||+++++.+++++.  .++|++++||.+
T Consensus        33 li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~--~~~~li~~~D~~  109 (236)
T cd04189          33 IIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFLG--DEPFVVYLGDNL  109 (236)
T ss_pred             hHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc-hhhcCCeEEEEECCCCCChHHHHHHHHHhcC--CCCEEEEECCee
Confidence            6899999999999999999999999999999987 3457788888888888999999999999994  578999999999


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC--
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT--  158 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~--  158 (380)
                      ++.++.++++.|.++++++++++.+.+++..||.+..|+ +++..+.|||.....++.++|+|+|++++++.+.....  
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~-~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~  188 (236)
T cd04189         110 IQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD-GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSW  188 (236)
T ss_pred             cCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC-CeEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCC
Confidence            999999999999998888999888888888899888864 59999999988666789999999999999987743111  


Q ss_pred             ---CcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164         159 ---SIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       159 ---~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                         ....++++.+++++ ++.+++.+++|.+++++++|.+++..+++
T Consensus       189 ~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~  235 (236)
T cd04189         189 RGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD  235 (236)
T ss_pred             CCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence               11246788888775 68999999999999999999999877764

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.93  E-value=3.6e-24  Score=188.86  Aligned_cols=195  Identities=25%  Similarity=0.441  Sum_probs=161.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc-cCCcEEE-------Ee------------ecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-KLGISLV-------FS------------HENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-~~~~~i~-------~~------------~~~~~~gt~~al~~   60 (380)
                      ||+|+++.+.++|+++|+++++|+++++++|+.+..+ ..++++.       +.            .+...+||++++++
T Consensus        31 ~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~  110 (253)
T cd02524          31 ILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKR  110 (253)
T ss_pred             HHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccceeeecccccccceeecccCcccccHHHHHH
Confidence            6899999999999999999999999999999976321 0112221       11            12235789999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEE
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA  140 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~  140 (380)
                      +++++++ .++|++++||++++.++.++++.|.+.++++|++..  .++..||.+..|++++|..+.|||... +.++++
T Consensus       111 a~~~~~~-~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~--~~~~~~g~v~~d~~g~V~~~~ekp~~~-~~~i~~  186 (253)
T cd02524         111 VRRYLGD-DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV--HPPGRFGELDLDDDGQVTSFTEKPQGD-GGWING  186 (253)
T ss_pred             HHHhcCC-CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEECCCCCEEEEEECCCCC-CceEEE
Confidence            9999941 278999999999999999999999999888887765  356788999999889999999998754 578999


Q ss_pred             EEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         141 GMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       141 giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                      |+|+|++++++.+......+..++++.++++++++++.+.++|.+++++.+|.++...+
T Consensus       187 Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~  245 (253)
T cd02524         187 GFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELW  245 (253)
T ss_pred             EEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHH
Confidence            99999999998886654455668999999999999999999999999999999887555

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.93  E-value=6.7e-24  Score=183.21  Aligned_cols=184  Identities=39%  Similarity=0.728  Sum_probs=163.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|+++++++++++.+++++++.+ ...++.++.+..+++..|++++++.+++++.  .++|++++||++
T Consensus        31 li~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~-~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~--~~~~lv~~~D~~  107 (217)
T cd04181          31 ILEYIIERLARAGIDEIILVVGYLGEQIEEYFGD-GSKFGVNIEYVVQEEPLGTAGAVRNAEDFLG--DDDFLVVNGDVL  107 (217)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcC-hhhcCceEEEEeCCCCCccHHHHHHhhhhcC--CCCEEEEECCee
Confidence            6899999999999999999999999999999976 3336778888888778999999999999983  788999999999


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC---
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP---  157 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~---  157 (380)
                      ++.++.++++.|+++++++++++.+.+++..|+.+..|+++++.++.|||.....++.++|+|+|++++++.+....   
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~  187 (217)
T cd04181         108 TDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILPRG  187 (217)
T ss_pred             cCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCCcc
Confidence            99999999999999999999999888888899999998889999999998876678999999999999998886542   


Q ss_pred             CCcccchhhhhhcCCcEEEEEeccEEEecC
Q psy9164         158 TSIEKEIFPLMSKEKQLYAMELKGFWMDVG  187 (380)
Q Consensus       158 ~~~~~~il~~l~~~~~i~~~~~~~~~~~i~  187 (380)
                      ..+..++++.++++.++++++++++|.+++
T Consensus       188 ~~~~~~~~~~l~~~~~v~~~~~~g~w~dig  217 (217)
T cd04181         188 EDELTDAIPLLIEEGKVYGYPVDGYWLDIG  217 (217)
T ss_pred             cccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence            455567899998889999999999999985

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.93  E-value=1.6e-23  Score=181.14  Aligned_cols=188  Identities=33%  Similarity=0.618  Sum_probs=162.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|+++++|+++++.+++++|+.+ ...+++++.++.++..+||++++..+.+..   .++|+|++||.+
T Consensus        31 li~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~---~~~~lv~~~D~i  106 (220)
T cd06426          31 ILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGD-GSKFGVNISYVREDKPLGTAGALSLLPEKP---TDPFLVMNGDIL  106 (220)
T ss_pred             hHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCC-ccccCccEEEEECCCCCcchHHHHHHHhhC---CCCEEEEcCCEe
Confidence            6999999999999999999999999999999976 345677888877778899999998888777   788999999999


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCCc
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI  160 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~~  160 (380)
                      ++.++.++++.|++.++++++++.+......||++..|+ ++|.++.|||..  ++++++|+|+|++++++.+++.....
T Consensus       107 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~-~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~  183 (220)
T cd06426         107 TNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG-GRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKNEFFD  183 (220)
T ss_pred             eccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC-CEEEEEEECCCC--CCeEEEEEEEEcHHHHhhcCCCCCcC
Confidence            999999999999998888898887766667799988875 899999999764  57899999999999999886543322


Q ss_pred             ccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHH
Q psy9164         161 EKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       161 ~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                      ..++++.+++++ ++.++.++++|.+++++++|.+|
T Consensus       184 l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a  219 (220)
T cd06426         184 MPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKA  219 (220)
T ss_pred             HHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhh
Confidence            346788888775 69999999999999999999876

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.92  E-value=4e-23  Score=183.86  Aligned_cols=196  Identities=26%  Similarity=0.408  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc------c--------------CCcEEEEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK------K--------------LGISLVFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~------~--------------~~~~i~~~~~~~~~gt~~al~~   60 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.      .              .+.++.+..+++.+||+++++.
T Consensus        33 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~  112 (267)
T cd02541          33 VIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLC  112 (267)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHH
Confidence            6899999999999999999999999999999965211      0              1457778888888999999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECC----CCceeEEEeCCC
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDF---PFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNE----HGCIESFIEKPQ  131 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~---~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~----~~~v~~~~ek~~  131 (380)
                      +++++.  +++|+|++||.++..   +++++++.|++.++. ++++...+  ++..||.+..|+    .+++.++.|||.
T Consensus       113 ~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~  189 (267)
T cd02541         113 AKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPK  189 (267)
T ss_pred             HHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCC
Confidence            999995  478999999997654   499999999887665 35444443  567899999885    248999999986


Q ss_pred             --CCCCCeEEEEEEEeCHhHHhhccCCCC-----CcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         132 --EFVSNKINAGMYIFNPSVLDRIEIKPT-----SIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       132 --~~~~~~~~~giyi~~~~~l~~l~~~~~-----~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                        ...+.++++|+|+|++++|+.+.....     ....++++.++++++++++.++++|.+++++++|++++..+
T Consensus       190 ~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~  264 (267)
T cd02541         190 PEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF  264 (267)
T ss_pred             CCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence              456789999999999999988754221     12236788998888999999999999999999999997654

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.91  E-value=9.1e-24  Score=183.65  Aligned_cols=163  Identities=20%  Similarity=0.220  Sum_probs=113.7

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEEcC
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCIIGW  277 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ig~  277 (380)
                      ++.+.|++++.|++++.|++.|.|++++.||++|.|++++.|. ++.||+++.|++++.|.             .+.||+
T Consensus         3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~   82 (255)
T PRK12461          3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD   82 (255)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence            4455566666666666666666676777777777777777776 78888888888888874             478999


Q ss_pred             CCEECCceEEeeeeEe-cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCce
Q psy9164         278 KCVVGQWVRMENITVL-GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDEL  356 (380)
Q Consensus       278 ~~~ig~~~~i~~~~~~-~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~  356 (380)
                      ++.|+++++|+..+.. ..+.||+++.+.+++.+...+.||++++++.++.+..++.+.+..+-...+.+.++++||+++
T Consensus        83 ~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a  162 (255)
T PRK12461         83 RNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA  162 (255)
T ss_pred             ceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence            9999999999765432 245666666666666655555556655555555555444444432222234556788999999


Q ss_pred             EEeceeeeccccccCCCCCCCcc
Q psy9164         357 YVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       357 ~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +|+++++     |++|+||++++
T Consensus       163 ~Vg~gs~-----V~~dVpp~~i~  180 (255)
T PRK12461        163 MMAGGSR-----ISKDVPPYCMM  180 (255)
T ss_pred             EECCCce-----EeccCCCCeEE
Confidence            9999999     99999999986

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.91  E-value=8.9e-24  Score=185.54  Aligned_cols=163  Identities=24%  Similarity=0.313  Sum_probs=135.3

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEEcC
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCIIGW  277 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ig~  277 (380)
                      ++.+.|++++.+++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|.             ++.||+
T Consensus         3 ~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~   82 (254)
T cd03351           3 HPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD   82 (254)
T ss_pred             CCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence            4556677777788888888888888888888888888888887 68899999999999985             689999


Q ss_pred             CCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCc
Q psy9164         278 KCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       278 ~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~  355 (380)
                      +|.|+++|+|+..+..+  .+.||+++.|++++.|...++||+++++++++.+..++++++.++-...+.+.++++|+++
T Consensus        83 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~  162 (254)
T cd03351          83 NNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRH  162 (254)
T ss_pred             CCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCC
Confidence            99999999998766553  6899999999999999888999999999998888887766664433334556778999999


Q ss_pred             eEEeceeeeccccccCCCCCCCcc
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++|+++++     |++|+|+++++
T Consensus       163 ~~Ig~~s~-----V~~~i~~~~~~  181 (254)
T cd03351         163 AMVGGGSG-----VVQDVPPYVIA  181 (254)
T ss_pred             CEECcCCE-----EeeecCCCeEE
Confidence            99999999     99999998875

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.91  E-value=4.6e-23  Score=182.84  Aligned_cols=192  Identities=26%  Similarity=0.409  Sum_probs=155.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc--------------------cCCcEEEEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK--------------------KLGISLVFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~--------------------~~~~~i~~~~~~~~~gt~~al~~   60 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.                    ....++.+..+.+.+||+++++.
T Consensus        33 li~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~  112 (260)
T TIGR01099        33 LIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLC  112 (260)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEEecCCCCCHHHHHHH
Confidence            6899999999999999999999999999999974210                    00245667777888999999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECC----CCceeEEEeCCC
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDF---PFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNE----HGCIESFIEKPQ  131 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~---~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~----~~~v~~~~ek~~  131 (380)
                      ++++++  +++|+|++||.++..   +++++++.|+++++++ +++...  +++..||++..|.    +++|+.+.|||.
T Consensus       113 ~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~  189 (260)
T TIGR01099       113 AEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPK  189 (260)
T ss_pred             HHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCC
Confidence            999994  678999999997654   6999999999888765 444443  3568899998862    368999999985


Q ss_pred             --CCCCCeEEEEEEEeCHhHHhhccCCCCC-----cccchhhhhhcCCcEEEEEeccEEEecCChhhHHHH
Q psy9164         132 --EFVSNKINAGMYIFNPSVLDRIEIKPTS-----IEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       132 --~~~~~~~~~giyi~~~~~l~~l~~~~~~-----~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                        ...++++++|+|+|++++|+.+.....+     ...++++.++++++++++.++|+|.+++++++|+++
T Consensus       190 ~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a  260 (260)
T TIGR01099       190 PEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA  260 (260)
T ss_pred             CCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence              4457899999999999999887432221     123578888888999999999999999999999753

Built to distinquish between the highly similar genes galU and galF

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.91  E-value=1.2e-23  Score=184.69  Aligned_cols=164  Identities=24%  Similarity=0.321  Sum_probs=130.4

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEE
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCII  275 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i  275 (380)
                      .+++.+.|++++.|++++.|++++.|++++.||++|.|++++.|. +++||++|.|++++.|.             .+.|
T Consensus         4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I   83 (262)
T PRK05289          4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI   83 (262)
T ss_pred             ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence            345666666777777777777777777777777888888888776 78899999999999885             4899


Q ss_pred             cCCCEECCceEEeeeeEe--cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEe
Q psy9164         276 GWKCVVGQWVRMENITVL--GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIV  352 (380)
Q Consensus       276 g~~~~ig~~~~i~~~~~~--~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i  352 (380)
                      |+++.|+++++|+..+..  +.+.||+++.|+.++.+..++.||+++.+++++.+...+++.+. +||.+ +.+.++++|
T Consensus        84 G~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~-~~i~~~v~I  162 (262)
T PRK05289         84 GDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGL-TAVHQFVRI  162 (262)
T ss_pred             CCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeec-ceecCCCEE
Confidence            999999999999776532  35788888888888888888888888888888887776655553 45544 455788999


Q ss_pred             cCceEEeceeeeccccccCCCCCCCcc
Q psy9164         353 QDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +++++||++|+     |+||+||++++
T Consensus       163 g~~~~Ig~gs~-----V~~di~~~~~~  184 (262)
T PRK05289        163 GAHAMVGGMSG-----VSQDVPPYVLA  184 (262)
T ss_pred             CCCCEEeeecc-----eeccCCCCeEE
Confidence            99999999999     99999999876

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.91  E-value=1.9e-23  Score=183.41  Aligned_cols=163  Identities=21%  Similarity=0.288  Sum_probs=135.3

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEEcC
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCIIGW  277 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ig~  277 (380)
                      ++.+.|.+++.|++++.|++++.|++++.||++|.|+++|.|. ++.||++|.|++++.|.             ++.||+
T Consensus         2 ~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~   81 (254)
T TIGR01852         2 HPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD   81 (254)
T ss_pred             CCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence            3455666777777777777777777888888888888888776 78899999999999996             589999


Q ss_pred             CCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCc
Q psy9164         278 KCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       278 ~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~  355 (380)
                      ++.|+++|+|+.....+  .+.||+++.|+.++.+..++.||++++|++++.+..++++.+..+-...+.+.++++|+++
T Consensus        82 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~  161 (254)
T TIGR01852        82 NNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRY  161 (254)
T ss_pred             CCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCC
Confidence            99999999998766553  7899999999999999888999999999999988887776665433344566889999999


Q ss_pred             eEEeceeeeccccccCCCCCCCcc
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++|+++++     |++++|+++++
T Consensus       162 ~~Ig~~s~-----V~~~i~~~~~~  180 (254)
T TIGR01852       162 AMIGGLSA-----VSKDVPPYGLV  180 (254)
T ss_pred             CEEeeeee-----EeeecCCCcEE
Confidence            99999999     99999998876

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.91  E-value=5.7e-23  Score=185.20  Aligned_cols=191  Identities=16%  Similarity=0.235  Sum_probs=130.0

Q ss_pred             EEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccC
Q psy9164         183 WMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRD  261 (380)
Q Consensus       183 ~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~  261 (380)
                      +.-+.+|...+.....++.+.. ..+..+++.+.+++++.|++++.|++++.|++++.||++|.|++++.|+ +++||++
T Consensus        67 ~~~v~~p~~~~~~~~~~~~~~~-~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~  145 (324)
T TIGR01853        67 ALVVKDPYLAFAKVAELFDPPP-KREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG  145 (324)
T ss_pred             EEEECCHHHHHHHHHHHhcccc-cccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence            4555666654433222332211 1234567777788888888888888888888888888888888888885 7888899


Q ss_pred             CEECCCcEec-CeEEcCCCEECCceEEeee---------------eEecceEECccceeCcceEE---------------
Q psy9164         262 AIVKSHSWLE-GCIIGWKCVVGQWVRMENI---------------TVLGECIIGWKCVVGQWVRM---------------  310 (380)
Q Consensus       262 ~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~---------------~~~~~~~ig~~~~ig~~~~i---------------  310 (380)
                      |.|++++.|. +++||++|.|+++|.|+..               .+.+.++||+++.||+++.+               
T Consensus       146 ~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~  225 (324)
T TIGR01853       146 SRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTK  225 (324)
T ss_pred             ceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcE
Confidence            9998888886 7999999999999988631               11245777777777766655               


Q ss_pred             -ccceEECCCeEECcceEEcCCeee-cceeecCcce-----eecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         311 -ENITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLH-----MLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       311 -~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~-----~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                       .+.+.|++++.||+++.|.+++.+ .+.+||+++.     .+.++++||++++||++++     |++|+|+++++
T Consensus       226 I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~-----V~~~v~~~~~~  296 (324)
T TIGR01853       226 IDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSG-----VTKSIPPPGVY  296 (324)
T ss_pred             EccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCE-----eCCcCCCCcEE
Confidence             233344444444444444443322 2234555433     3566789999999999999     99999999876

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.89  E-value=8.2e-22  Score=180.51  Aligned_cols=228  Identities=20%  Similarity=0.264  Sum_probs=124.4

Q ss_pred             CceeEEEeCCCCC-CCCeEEEEEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhh-HHHHHHH
Q psy9164         121 GCIESFIEKPQEF-VSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRD-FLKGMCL  198 (380)
Q Consensus       121 ~~v~~~~ek~~~~-~~~~~~~giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~-~~~a~~~  198 (380)
                      +.+ .|.+++... ..+...++.++++++..+.++..                        -.+.-+..|.. +.+....
T Consensus        36 ~~L-sFl~~~k~~~~l~~~~A~a~Iv~~d~~~~~p~~------------------------~~~i~~~~p~~~~~~~~~~   90 (343)
T PRK00892         36 GQI-SFLANPKYRKQLATTKAGAVIVSPDDAEFVPAG------------------------NALLVVKNPYLAFARLAQL   90 (343)
T ss_pred             CeE-EEEcCchhHHHHhccCCeEEEechhhhhhccCC------------------------ceEEEeCCHHHHHHHHHHH
Confidence            455 477765522 24456789999988864433110                        01223344543 3333333


Q ss_pred             HHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEc
Q psy9164         199 YLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIG  276 (380)
Q Consensus       199 ~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig  276 (380)
                      +..+.....+..+++.+.+.+++++++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|.+ +.||
T Consensus        91 ~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig  170 (343)
T PRK00892         91 FDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIG  170 (343)
T ss_pred             hccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEEC
Confidence            32222113344566666666666666666666666666666666666666666665 566666666666666643 5566


Q ss_pred             CCCEECCceEEeee--------------eEecceEECccceeCcceEEc----------------cceEECCCeEECcce
Q psy9164         277 WKCVVGQWVRMENI--------------TVLGECIIGWKCVVGQWVRME----------------NITVLGEDVIVQDEL  326 (380)
Q Consensus       277 ~~~~ig~~~~i~~~--------------~~~~~~~ig~~~~ig~~~~i~----------------~~~~ig~~~~ig~~~  326 (380)
                      ++|.|++++.|+..              .+.++++||+++.||+++.|.                +.+.|+++++||+++
T Consensus       171 ~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~  250 (343)
T PRK00892        171 NRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHT  250 (343)
T ss_pred             CCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCc
Confidence            66666666666421              111345555555555544442                222222333333333


Q ss_pred             EEcCCeee-cceeecCc-----ceeecceeEecCceEEeceeeeccccccCCCCC-CCc
Q psy9164         327 YVNGGQVL-PHKSIGSS-----LHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPE-PQI  378 (380)
Q Consensus       327 ~i~~~~v~-~~~~i~~~-----~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~-~~i  378 (380)
                      .|++++.+ .+.+||++     .+.+.++++||++++|+++++     |++|+|+ +.+
T Consensus       251 ~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~-----v~~~i~~~~~~  304 (343)
T PRK00892        251 AIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSG-----VTKSIPEPGEY  304 (343)
T ss_pred             EEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCe-----eCCccCCCCeE
Confidence            33332211 12334443     233355678999999999999     9999999 654

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.88  E-value=1.6e-21  Score=164.65  Aligned_cols=155  Identities=25%  Similarity=0.409  Sum_probs=106.6

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL  293 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~  293 (380)
                      ...+.++++|++++.|++++.|++++.||++|.|++++.|.++.|++++.|++++.+.++++++++.|++++.|.+    
T Consensus         9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~----   84 (193)
T cd03353           9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP----   84 (193)
T ss_pred             eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcC----
Confidence            3455677888888888888888888888888888888888888888999998888888888888888888888743    


Q ss_pred             cceEECccceeCcceEE-----------ccceEECCCeEECcceEEcCCeee-------------c-ceeecCcceeecc
Q psy9164         294 GECIIGWKCVVGQWVRM-----------ENITVLGEDVIVQDELYVNGGQVL-------------P-HKSIGSSLHMLGE  348 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i-----------~~~~~ig~~~~ig~~~~i~~~~v~-------------~-~~~i~~~~~~~~~  348 (380)
                       ++.|++++.|++++.+           .+.+.+ .++.||.++.|+++++.             . +.+|+.++ .+.+
T Consensus        85 -~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~-~i~~  161 (193)
T cd03353          85 -GTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNS-QLVA  161 (193)
T ss_pred             -ccEECCCCEECCcEEEecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCC-EEeC
Confidence             3333444443333333           222211 12334444444444322             2 23344443 3356


Q ss_pred             eeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164         349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      +++|+++++|+++++     |++|+||+++++
T Consensus       162 ~~~Ig~~~~i~~gs~-----V~~~v~~~~~v~  188 (193)
T cd03353         162 PVTIGDGATIAAGST-----ITKDVPPGALAI  188 (193)
T ss_pred             CcEECCCcEECCCCE-----EccccCCCCEEE
Confidence            789999999999999     999999999874

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.87  E-value=4.6e-21  Score=166.62  Aligned_cols=163  Identities=21%  Similarity=0.301  Sum_probs=85.7

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEcCCCEECCceEE
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRM  287 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i  287 (380)
                      .+.+.+.+++++.+++++.|+++++|++++.||++|.|+++++|+ ++.||+++.|++++.|.. +.||++|.|++++.|
T Consensus       101 ~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI  180 (338)
T COG1044         101 GIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI  180 (338)
T ss_pred             ccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence            344444444444444444444555555555555555555555554 455555555555555533 566666666666655


Q ss_pred             ee--------------eeEecceEECccceeCcceEEccc----eEECCCeE------ECcceEEcCCee-------ecc
Q psy9164         288 EN--------------ITVLGECIIGWKCVVGQWVRMENI----TVLGEDVI------VQDELYVNGGQV-------LPH  336 (380)
Q Consensus       288 ~~--------------~~~~~~~~ig~~~~ig~~~~i~~~----~~ig~~~~------ig~~~~i~~~~v-------~~~  336 (380)
                      +.              ..+.++++||+++.||.++.|..+    ++|+++++      ||.||.||.++.       -+.
T Consensus       181 G~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs  260 (338)
T COG1044         181 GADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGS  260 (338)
T ss_pred             ccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeecc
Confidence            42              123345666666655555555433    33333332      233333333322       122


Q ss_pred             eeecCc-----ceeecceeEecCceEEeceeeeccccccCCCCCCC
Q psy9164         337 KSIGSS-----LHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQ  377 (380)
Q Consensus       337 ~~i~~~-----~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~  377 (380)
                      .+||++     .+-+.+...|+|++.|++.+-     |.+++|++.
T Consensus       261 ~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~-----v~~~i~~~~  301 (338)
T COG1044         261 VKIGKYVIIGGQVGIAGHLEIGDGVTIGARSG-----VMASITEPG  301 (338)
T ss_pred             ceECCeEEECcceeecCceEEcCCCEEecccc-----cccccCCCc
Confidence            345554     344455667888888888888     899998875

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.87  E-value=1.7e-21  Score=159.73  Aligned_cols=159  Identities=23%  Similarity=0.340  Sum_probs=108.6

Q ss_pred             ccccceeeCCCCEECCCcEECCCc------EECCCCEEcCCcEEe-ceEEccCCEECCCcEe-------------cCeEE
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNV------TIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-------------EGCII  275 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~i  275 (380)
                      .|++++.|.|.++|++++.|||.+      .|++++.|+++++|. .+.||+++.|-+.+.|             ...+|
T Consensus         5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I   84 (260)
T COG1043           5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII   84 (260)
T ss_pred             ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence            344555555555555555554444      444444444455443 5666666666666666             24799


Q ss_pred             cCCCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164         276 GWKCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       276 g~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~  353 (380)
                      |+++.|.++++|+.++..+  -+.||+++++..++.+...|+||++|.+-.|+.+++-..+.+..|-.+.+.+-+=|+||
T Consensus        85 G~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG  164 (260)
T COG1043          85 GDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIG  164 (260)
T ss_pred             CCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEc
Confidence            9999999999999887654  57788888888887777777777777766666665444444444444445555667899


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||+.|.     |.+||||+.++
T Consensus       165 ~~amiGg~S~-----v~~DVpPy~~~  185 (260)
T COG1043         165 AHAMIGGLSA-----VSQDVPPYVIA  185 (260)
T ss_pred             chheeccccc-----cccCCCCeEEe
Confidence            9999999999     99999999875

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=2.7e-20  Score=156.63  Aligned_cols=198  Identities=25%  Similarity=0.412  Sum_probs=163.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccc----------c--------c--cCCcEEEEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVE----------T--------K--KLGISLVFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~----------~--------~--~~~~~i~~~~~~~~~gt~~al~~   60 (380)
                      +|+|+.+.+..+|+++++++++.....|.+|+...          .        +  ....++.|+.|.+++|.++|+++
T Consensus        37 ~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~  116 (291)
T COG1210          37 LIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLC  116 (291)
T ss_pred             hHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHh
Confidence            58999999999999999999999988999988652          0        1  22568889999999999999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEE----ECCC-CceeEEEeCC
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDF---PFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVL----YNEH-GCIESFIEKP  130 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~---~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~----~d~~-~~v~~~~ek~  130 (380)
                      |+++++  +++|.|+.+|.+...   .+++|++.+.+.+.+ ++.+.++  ++.++||++.    .+.+ -++..++|||
T Consensus       117 A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP  193 (291)
T COG1210         117 AKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKP  193 (291)
T ss_pred             hhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECC
Confidence            999998  889999999987654   389999999888763 4555555  5678999987    3232 4899999998


Q ss_pred             C--CCCCCeEEEEEEEeCHhHHhhccCCCCCcc-----cchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164         131 Q--EFVSNKINAGMYIFNPSVLDRIEIKPTSIE-----KEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       131 ~--~~~~~~~~~giyi~~~~~l~~l~~~~~~~~-----~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                      .  +..|++.-.|.|+|+|++|+.|+.......     .|.+..|+++..++++.+.|.-+|+|++..|++++..+..
T Consensus       194 ~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l  271 (291)
T COG1210         194 KPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFAL  271 (291)
T ss_pred             CCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence            6  678999999999999999999976443322     3467788888999999999999999999999999765543

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.86  E-value=1.6e-20  Score=161.71  Aligned_cols=146  Identities=17%  Similarity=0.286  Sum_probs=121.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCC-----cEEEEeecCCCCCCchHHHHh--HHhhCCCCCcEE
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLG-----ISLVFSHENEPLGTAGPLALA--KDILNKSQEPFF   73 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~-----~~i~~~~~~~~~gt~~al~~a--~~~i~~~~~~~l   73 (380)
                      ||+|+|++|.++|+++|+|+++++.+++++|+.+. ..|+     ..+.+..+++..+++++++..  +..+   +++|+
T Consensus        33 iI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~~~~~~---~~~fl  108 (217)
T cd04197          33 LIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKGLI---RGDFI  108 (217)
T ss_pred             hHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhc-cccccccCcceEEEEeCCCcCccchHHHHHhhcccc---CCCEE
Confidence            79999999999999999999999999999999873 3332     456777778888999988654  4455   67899


Q ss_pred             EEeCCcccCCChHHHHHHHHhc-----CCcEEEEEEEcCCCC------ceeEEEECCC-CceeEEEeCCCCCC-------
Q psy9164          74 VLNSDIICDFPFKDLVSFHKNH-----GKEGTIVVTQVEEPS------KYGVVLYNEH-GCIESFIEKPQEFV-------  134 (380)
Q Consensus        74 v~~gD~i~~~~l~~~l~~h~~~-----~~~~tl~~~~~~~~~------~~g~v~~d~~-~~v~~~~ek~~~~~-------  134 (380)
                      +++||++++.+++++++.|+++     ++++|+++.+.+++.      .++++.+|++ ++++.|.|||....       
T Consensus       109 v~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~  188 (217)
T cd04197         109 LVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLP  188 (217)
T ss_pred             EEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccC
Confidence            9999999999999999999884     788999988876654      2578888865 89999999976332       


Q ss_pred             -------------CCeEEEEEEEeCHhHH
Q psy9164         135 -------------SNKINAGMYIFNPSVL  150 (380)
Q Consensus       135 -------------~~~~~~giyi~~~~~l  150 (380)
                                   +++.++|+|+|+++++
T Consensus       189 ~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         189 SELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             HHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence                         6889999999999874

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.85  E-value=3.9e-20  Score=157.85  Aligned_cols=160  Identities=24%  Similarity=0.381  Sum_probs=106.2

Q ss_pred             CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec--------------------
Q psy9164         213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE--------------------  271 (380)
Q Consensus       213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------  271 (380)
                      +.+.+.+++.|+++++|++++.|++++.||++|.|++++.|. ++.|++++.|++++.|.                    
T Consensus        12 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~   91 (205)
T cd03352          12 PNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLG   91 (205)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcc
Confidence            334444444444455555555555555555555555555555 36666666666666652                    


Q ss_pred             CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeeccee
Q psy9164         272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDV  350 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v  350 (380)
                      .+.|++++.|++++.+.... ...+.||+++.++.++.+..++.++++++++.++.+...+.+.+ ..|+.+ +++.+++
T Consensus        92 ~v~Ig~~~~Ig~~~~i~~~~-~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~-~~v~~~~  169 (205)
T cd03352          92 GVIIGDDVEIGANTTIDRGA-LGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQ-VGIAGHL  169 (205)
T ss_pred             eEEECCCEEECCCCEEeccc-cCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCC-CEEeCCc
Confidence            36677777777777764432 34677788888888877777777777777777777765554444 445555 4456789


Q ss_pred             EecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         351 IVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       351 ~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +|+++++|+++++     |++|+|+++++
T Consensus       170 ~ig~~~~i~~~s~-----v~~~~~~~~~~  193 (205)
T cd03352         170 TIGDGVVIGAGSG-----VTSIVPPGEYV  193 (205)
T ss_pred             EECCCCEEcCCCE-----EeeECCCCCEE
Confidence            9999999999999     99999999876

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.84  E-value=1.1e-19  Score=149.11  Aligned_cols=131  Identities=21%  Similarity=0.250  Sum_probs=110.7

Q ss_pred             ccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164         209 KLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       209 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i  287 (380)
                      ..+.++..+.+++++++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.+++|++++.|++++.+
T Consensus         6 ~~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i   85 (163)
T cd05636           6 GTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV   85 (163)
T ss_pred             cccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE
Confidence            3456677888899999999999999999999999999999999997 799999999999999999999999999998888


Q ss_pred             eeeeEecceEECccceeCcceEEcc------------------------ceEECCCeEECcceEEcCCeeecceeecCcc
Q psy9164         288 ENITVLGECIIGWKCVVGQWVRMEN------------------------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSL  343 (380)
Q Consensus       288 ~~~~~~~~~~ig~~~~ig~~~~i~~------------------------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~  343 (380)
                            .+++|++++.|++++.+.+                        +++|+++++||.++.|               
T Consensus        86 ------~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i---------------  144 (163)
T cd05636          86 ------GDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL---------------  144 (163)
T ss_pred             ------ecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE---------------
Confidence                  6677888888888887743                        4566666666666666               


Q ss_pred             eeecceeEecCceEEeceee
Q psy9164         344 HMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       344 ~~~~~~v~i~~~~~i~~~~v  363 (380)
                         .++++|+++++|++|++
T Consensus       145 ---~~g~~ig~~~~i~agsv  161 (163)
T cd05636         145 ---NPGVKIGPGSWVYPGCV  161 (163)
T ss_pred             ---CCCcEECCCCEECCCcE
Confidence               55667888888888887

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.83  E-value=9.8e-20  Score=158.41  Aligned_cols=76  Identities=18%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             eEEcCCCEECCceEEeee----eEe-------cceEECccceeCcceEEccceEECCCeEECcceEEcCCe-eecceeec
Q psy9164         273 CIIGWKCVVGQWVRMENI----TVL-------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKSIG  340 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~----~~~-------~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-v~~~~~i~  340 (380)
                      ++|++++.||.+++|..+    ++.       ..+.|+++|.||++|.|..++-|+..+.||.+|.|++.+ +..|..|+
T Consensus       203 V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~Ig  282 (338)
T COG1044         203 VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIG  282 (338)
T ss_pred             EEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEc
Confidence            455566666666555432    111       123333333333333333333344444445555554443 33444555


Q ss_pred             Ccceeecc
Q psy9164         341 SSLHMLGE  348 (380)
Q Consensus       341 ~~~~~~~~  348 (380)
                      +++.+.+.
T Consensus       283 D~~~I~~~  290 (338)
T COG1044         283 DGVTIGAR  290 (338)
T ss_pred             CCCEEecc
Confidence            55444333

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.83  E-value=3.9e-20  Score=158.56  Aligned_cols=117  Identities=21%  Similarity=0.268  Sum_probs=81.3

Q ss_pred             chhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEEC
Q psy9164         163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIG  242 (380)
Q Consensus       163 ~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig  242 (380)
                      |.+|.|.+.+   .+...+||.|+   ++|+++++..|.........   .........+++.++.|++++.|.+++.||
T Consensus        32 ~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~---~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG  102 (231)
T TIGR03532        32 ESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDR---RNSAIPLLDLKNINARIEPGAIIRDQVIIG  102 (231)
T ss_pred             hheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecc---cccccccccccccccEECCCCEEeCCeEEC
Confidence            5667776655   77888999999   99999999988765421110   000011112355666666666666677777


Q ss_pred             CCCEEcCCcEEe-ceEEccCCEECCCcEec-CeEEcCCCEECCceEEe
Q psy9164         243 PGVVIEGGVCIK-RSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRME  288 (380)
Q Consensus       243 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~  288 (380)
                      ++|.|++++.|. +++||++|.|++++.|. ++.||++|.|++++.+.
T Consensus       103 ~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~  150 (231)
T TIGR03532       103 DNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLA  150 (231)
T ss_pred             CCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEc
Confidence            777777777775 67788888888888874 68888888888888884

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.82  E-value=7.9e-19  Score=152.69  Aligned_cols=184  Identities=23%  Similarity=0.403  Sum_probs=141.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+++.+.   .++.+.+..+.+..|++++++.+++++   .++|++++||++
T Consensus        31 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~s~~~~~~~~---~~~~lv~~~D~~  104 (229)
T cd02523          31 LLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYAETNNIYSLYLARDFL---DEDFLLLEGDVV  104 (229)
T ss_pred             HHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchhhhCcHHHHHHHHHHc---CCCEEEEeCCEe
Confidence            68999999999999999999999999999998652   456666655666799999999999999   689999999999


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCC--CceeEEEECCCCceeEEEeCCCCCC-CCeEEEEEEEeCHhHHhhccC--
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEP--SKYGVVLYNEHGCIESFIEKPQEFV-SNKINAGMYIFNPSVLDRIEI--  155 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~--~~~g~v~~d~~~~v~~~~ek~~~~~-~~~~~~giyi~~~~~l~~l~~--  155 (380)
                      ++.   ++++.|.+++++.|+++.+..+.  ..++.... +++++..+.+||.... ..+.++|+|+|+++.++.+.+  
T Consensus       105 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~  180 (229)
T cd02523         105 FDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLD-DAGVLLGIISKAKNLEEIQGEYVGISKFSPEDADRLAEAL  180 (229)
T ss_pred             cCH---HHHHHHHcCCCCCeEEEccCcccccccceeeec-CccceEeecccCCCcchhceEEEeEEEECHHHHHHHHHHH
Confidence            865   56777877888888888763322  33443322 2368889999987543 568999999999999876632  


Q ss_pred             -------CCCCcccchhhhhhcCCc--EEEEEeccEEEecCChhhHHHH
Q psy9164         156 -------KPTSIEKEIFPLMSKEKQ--LYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       156 -------~~~~~~~~il~~l~~~~~--i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                             .......++++.++++.+  ++.+.. ++|.+++++++|.++
T Consensus       181 ~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a  228 (229)
T cd02523         181 EELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERA  228 (229)
T ss_pred             HHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhh
Confidence                   122334568888887444  444444 899999999999865

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.81  E-value=8.4e-19  Score=158.20  Aligned_cols=137  Identities=22%  Similarity=0.315  Sum_probs=82.5

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec---------------------
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE---------------------  271 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------------------  271 (380)
                      .+.|.++++|++++.|++++.|++++.||++|.|++++.|. +++||++|.|++++.|.                     
T Consensus       115 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G  194 (324)
T TIGR01853       115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIG  194 (324)
T ss_pred             CcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccc
Confidence            33344444444444445555555566666666666777776 78888888888888883                     


Q ss_pred             CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceE------------ECCCeEECcceEEcCCe-eeccee
Q psy9164         272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITV------------LGEDVIVQDELYVNGGQ-VLPHKS  338 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~------------ig~~~~ig~~~~i~~~~-v~~~~~  338 (380)
                      .++||+++.||++++|..... ++++||+++.|++.+.|.+++.            |..+++||+++++++++ +.++.+
T Consensus       195 ~vvIgd~v~IGa~~~I~r~~~-~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~  273 (324)
T TIGR01853       195 RVIIEDDVEIGANTTIDRGAF-DDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLE  273 (324)
T ss_pred             eEEECCCcEECCCCEEecCCc-CcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCE
Confidence            378899999999988854332 3344444444444444444444            44445556666666554 455567


Q ss_pred             ecCcceeecceeE
Q psy9164         339 IGSSLHMLGEDVI  351 (380)
Q Consensus       339 i~~~~~~~~~~v~  351 (380)
                      ||+++.+.++.++
T Consensus       274 Ig~~~~ig~~s~V  286 (324)
T TIGR01853       274 IGDNVTIGAKSGV  286 (324)
T ss_pred             ECCCCEEccCCEe
Confidence            7777666555444

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.81  E-value=9.1e-19  Score=160.43  Aligned_cols=135  Identities=20%  Similarity=0.297  Sum_probs=75.7

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec--------------------CeE
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE--------------------GCI  274 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~  274 (380)
                      .|.+++.|++++.|++++.|++++.||++|.|++++.|. ++.|+++|.|++++.|.                    +++
T Consensus       126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~  205 (343)
T PRK00892        126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI  205 (343)
T ss_pred             EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence            333334444444444444444455555555555555554 45577777777777773                    478


Q ss_pred             EcCCCEECCceEEeeeeEecceEECccc------------eeCcceEEccceEECCCeEECcceEEcCCe-eecceeecC
Q psy9164         275 IGWKCVVGQWVRMENITVLGECIIGWKC------------VVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKSIGS  341 (380)
Q Consensus       275 ig~~~~ig~~~~i~~~~~~~~~~ig~~~------------~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-v~~~~~i~~  341 (380)
                      ||+++.||++++|...+. ++++||+++            .||+++.|..++.|..+++||++++|+.++ +.++.+||+
T Consensus       206 Ig~~v~IGa~~~I~~~~~-~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~  284 (343)
T PRK00892        206 IGDDVEIGANTTIDRGAL-DDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGD  284 (343)
T ss_pred             ECCCcEECCCcEEecCcc-ccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECC
Confidence            888888888888854321 233444444            444444444444444455566666666655 445556777


Q ss_pred             cceeecceeE
Q psy9164         342 SLHMLGEDVI  351 (380)
Q Consensus       342 ~~~~~~~~v~  351 (380)
                      ++.+.++.++
T Consensus       285 ~~~i~~~s~v  294 (343)
T PRK00892        285 GVTITAMSGV  294 (343)
T ss_pred             CCEEecCCee
Confidence            6555554443

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.80  E-value=1.6e-18  Score=147.39  Aligned_cols=152  Identities=26%  Similarity=0.527  Sum_probs=124.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcE-----EEEee------cCCCCCCchHHHHhHHhhCCC-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGIS-----LVFSH------ENEPLGTAGPLALAKDILNKS-   68 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~-----i~~~~------~~~~~gt~~al~~a~~~i~~~-   68 (380)
                      ||+|+|++|.++|+++++|+++++.+++.+++.+ ...|+++     +.+..      +++.+||+++++.+++++.+. 
T Consensus        32 li~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~  110 (200)
T cd02508          32 LIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGS-GKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSD  110 (200)
T ss_pred             eHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhC-CCcccCCCCCCCEEEeCcccCCCCCcccCcHHHHHHHHHHHHhCC
Confidence            6899999999999999999999999999999976 3334432     22222      457899999999999998422 


Q ss_pred             CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHh
Q psy9164          69 QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPS  148 (380)
Q Consensus        69 ~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~  148 (380)
                      .++|++++||++++.+++++++.|+++++.+|+++.                                 +++|+|+|+++
T Consensus       111 ~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~---------------------------------~~~g~yi~~~~  157 (200)
T cd02508         111 PEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK---------------------------------ASMGIYIFSKD  157 (200)
T ss_pred             CCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh---------------------------------hcCEEEEEEHH
Confidence            367999999999999999999999998888887664                                 68999999999


Q ss_pred             HHhh-ccC----CCCCcccchhhhhhcCCcEEEEEeccEEEec
Q psy9164         149 VLDR-IEI----KPTSIEKEIFPLMSKEKQLYAMELKGFWMDV  186 (380)
Q Consensus       149 ~l~~-l~~----~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i  186 (380)
                      +|.. ++.    +...+..|+++.++++++++++..+++|.|+
T Consensus       158 ~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di  200 (200)
T cd02508         158 LLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI  200 (200)
T ss_pred             HHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence            9854 432    2334556899999988999999999999875

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.80  E-value=7.8e-18  Score=146.68  Aligned_cols=185  Identities=18%  Similarity=0.314  Sum_probs=140.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCCh---HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRA---EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS   77 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g   77 (380)
                      ||+|+|+.|.++|++++++++++..   +.+.+++...  ..++++.+ .++..+||+++++.++..+. .+++|++++|
T Consensus        31 li~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~-~~~~~~g~~~~l~~a~~~l~-~~~~~lv~~~  106 (231)
T cd04183          31 MIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE-LDGETLGAACTVLLAADLID-NDDPLLIFNC  106 (231)
T ss_pred             HHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE-eCCCCCcHHHHHHHHHhhcC-CCCCEEEEec
Confidence            6899999999999999999886421   3334444321  22456643 45578999999999999983 2478999999


Q ss_pred             CcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHh-HH-hhccC
Q psy9164          78 DIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPS-VL-DRIEI  155 (380)
Q Consensus        78 D~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~-~l-~~l~~  155 (380)
                      |++++.++.++++.|.+.+...++++... +...|+.+.+|+++++..+.||+.  .+.+.++|+|+|+++ .| +.+..
T Consensus       107 D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d~~~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~  183 (231)
T cd04183         107 DQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLDENGRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKK  183 (231)
T ss_pred             ceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEECCCCCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHH
Confidence            99999999999999988777777766654 556899999998999999998853  457899999999987 43 33321


Q ss_pred             ----C---CC-CcccchhhhhhcCC-cEEEEEe-ccEEEecCChhhH
Q psy9164         156 ----K---PT-SIEKEIFPLMSKEK-QLYAMEL-KGFWMDVGQPRDF  192 (380)
Q Consensus       156 ----~---~~-~~~~~il~~l~~~~-~i~~~~~-~~~~~~i~~~~~~  192 (380)
                          .   .. ....++++.+++++ ++.++.+ .++|.++++|++|
T Consensus       184 ~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl  230 (231)
T cd04183         184 MIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL  230 (231)
T ss_pred             HHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence                1   11 12356888888776 6999999 6899999999886

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.78  E-value=8.7e-18  Score=146.28  Aligned_cols=90  Identities=18%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             eEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCee-
Q psy9164         256 STILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV-  333 (380)
Q Consensus       256 ~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v-  333 (380)
                      ..||+++.|++++.|.. +.++..+.||++|.+.     .++.|+++|.||+++.+.+++.+..++.||++++|++++. 
T Consensus        78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~-----~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V  152 (255)
T PRK12461         78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLM-----AYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV  152 (255)
T ss_pred             eEECCceEECCccEEecCcccCCcEEEcccceec-----cCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence            34555555555555532 3344444555555442     3444555555555555555555555566666666665543 


Q ss_pred             ecceeecCcceeeccee
Q psy9164         334 LPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       334 ~~~~~i~~~~~~~~~~v  350 (380)
                      .+..+||+++++.+..+
T Consensus       153 ~~~~~IG~~a~Vg~gs~  169 (255)
T PRK12461        153 HQFCRIGALAMMAGGSR  169 (255)
T ss_pred             CCCCEECCCcEECCCce
Confidence            33345555555444433

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.76  E-value=1.4e-17  Score=146.47  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=49.8

Q ss_pred             eEEcCCCEECCceEEeeeeEe-------cceEECccceeCcceEEccc-------eEECCCeEECcceEEcCCeeeccee
Q psy9164         273 CIIGWKCVVGQWVRMENITVL-------GECIIGWKCVVGQWVRMENI-------TVLGEDVIVQDELYVNGGQVLPHKS  338 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~~~~-------~~~~ig~~~~ig~~~~i~~~-------~~ig~~~~ig~~~~i~~~~v~~~~~  338 (380)
                      +.||++|.|++++.|++.+..       ..+.||+++.|++++.|..+       +.||+++.|++++.|+.++++++..
T Consensus        51 ~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v  130 (262)
T PRK05289         51 TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHV  130 (262)
T ss_pred             cEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCe
Confidence            455555555555555432111       14666666666666666543       3555555555555555555444433


Q ss_pred             ecCcceeecceeEecCceEEeceee
Q psy9164         339 IGSSLHMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       339 i~~~~~~~~~~v~i~~~~~i~~~~v  363 (380)
                      +-.+.+.+.++++|++++.||++++
T Consensus       131 ~i~~~~~i~g~v~Igd~~~Ig~~~~  155 (262)
T PRK05289        131 ILANNATLAGHVEVGDYAIIGGLTA  155 (262)
T ss_pred             EECCccccccccccCCcEEEeecce
Confidence            3333344556667777777776666

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.76  E-value=4.2e-17  Score=141.90  Aligned_cols=185  Identities=22%  Similarity=0.362  Sum_probs=144.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|++++++++++..+++.+++.+    .+  +.+..+++..|++++++++.+++....++|++++||. 
T Consensus        28 li~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~--~~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p  101 (229)
T cd02540          28 MLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PN--VEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVP  101 (229)
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CC--cEEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCcc
Confidence            6899999999999999999999999999999865    23  3445566778999999999999842236799999998 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l-~~l  153 (380)
                       +.+.++.++++.|++.++++++...+.+++..|+.+..++++++..+.|+|...    ...++++|+|+|+++.+ +.+
T Consensus       102 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l  181 (229)
T cd02540         102 LITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEAL  181 (229)
T ss_pred             ccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHH
Confidence             456779999999988777788887888888889988888788999999987422    23688999999998765 444


Q ss_pred             cCC------CCCcccchhhhhhcCC-cEEEEEeccE--EEecCChhh
Q psy9164         154 EIK------PTSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRD  191 (380)
Q Consensus       154 ~~~------~~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~  191 (380)
                      +..      ......++++.+++++ ++.++..+|+  |+.+++|.+
T Consensus       182 ~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  228 (229)
T cd02540         182 PKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ  228 (229)
T ss_pred             HHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence            321      1122346788888776 6999999765  677887754

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.76  E-value=1.4e-17  Score=132.48  Aligned_cols=82  Identities=12%  Similarity=0.195  Sum_probs=56.6

Q ss_pred             CeEEcCCCEECCceEEeeee---EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecc
Q psy9164         272 GCIIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGE  348 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~  348 (380)
                      ++.||++|.|++++.+....   ....+.|+++++|+.++.+..++.||+++.||+++.|                  .+
T Consensus        49 ~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V------------------~~  110 (139)
T cd03350          49 CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVL------------------TQ  110 (139)
T ss_pred             CCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEE------------------cC
Confidence            34566666666666664211   1245777778888877777777777777777776666                  44


Q ss_pred             eeEecCceEEeceeeeccccccCCCCCC-Ccc
Q psy9164         349 DVIVQDELYVNGGQVLPHKSIGSSVPEP-QII  379 (380)
Q Consensus       349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~-~iv  379 (380)
                      +++|+++   +++++     |+||+|++ +++
T Consensus       111 ~~~I~~~---~~~~~-----v~~~~~~~~~~~  134 (139)
T cd03350         111 STPIYDR---ETGEI-----YYGRVPPGSVVV  134 (139)
T ss_pred             CeEeccc---CcccE-----EecccCCCCEEe
Confidence            5668887   99999     99999999 544

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.76  E-value=1.4e-17  Score=135.82  Aligned_cols=123  Identities=17%  Similarity=0.174  Sum_probs=84.0

Q ss_pred             eCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecCeEE-----cCCCEECCceEEeeeeEe
Q psy9164         223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEGCII-----GWKCVVGQWVRMENITVL  293 (380)
Q Consensus       223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~~i-----g~~~~ig~~~~i~~~~~~  293 (380)
                      |++++.|.+++.|.+++.||++|.|++++.|.    .++||++|.|++++.|.+...     +.++.||+++.+....+.
T Consensus         2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i   81 (164)
T cd04646           2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC   81 (164)
T ss_pred             cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence            45555555555555666666667776666663    468888888888888865433     334444444444443334


Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v  363 (380)
                      .++.||++++||.++.+..+++||++++||+++.|                  .+++++++++++++++.
T Consensus        82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV------------------~~~~~i~~~~vi~g~~~  133 (164)
T cd04646          82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKL------------------PSSEILPENTVIYGADC  133 (164)
T ss_pred             EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEE------------------CCCcEECCCeEEeCCce
Confidence            66888999999988888888888888887777777                  34455778888877766

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.75  E-value=6.4e-17  Score=141.64  Aligned_cols=189  Identities=21%  Similarity=0.306  Sum_probs=137.4

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|+.|.++ |+++|+|++++  +.+.+++.+    +++++.+..+.+..||++ +..+...+....+.||+++||.
T Consensus        28 ll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~  100 (239)
T cd02517          28 MIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDE  100 (239)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCC
Confidence            689999999999 99999998764  677787754    356776666666778875 6666666631125699999996


Q ss_pred             --ccCCChHHHHHHHHhc-CCcEEEEEEEcCCCC---ceeE--EEECCCCceeEEEeCCC-------CCCCCeEEEEEEE
Q psy9164          80 --ICDFPFKDLVSFHKNH-GKEGTIVVTQVEEPS---KYGV--VLYNEHGCIESFIEKPQ-------EFVSNKINAGMYI  144 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~-~~~~tl~~~~~~~~~---~~g~--v~~d~~~~v~~~~ek~~-------~~~~~~~~~giyi  144 (380)
                        +...+++.+++.|++. +.++++++.+.+++.   .++.  +..+++++++.|.++|.       +..++++++|+|+
T Consensus       101 Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~  180 (239)
T cd02517         101 PLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDSSEDFPYYKHIGIYA  180 (239)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCCCCCCceeEEEEEEE
Confidence              5567799999988776 677888887776554   3333  56677889999987542       1246799999999


Q ss_pred             eCHhHHhhccCC-CCCcc-cchhh--hhhcCC-cEEEEEeccEEEecCChhhHHHHH
Q psy9164         145 FNPSVLDRIEIK-PTSIE-KEIFP--LMSKEK-QLYAMELKGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       145 ~~~~~l~~l~~~-~~~~~-~~il~--~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~  196 (380)
                      |+++.++.+... ...+. .+.++  .+++++ ++.++...++|.++++|++|.++.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~  237 (239)
T cd02517         181 YRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVE  237 (239)
T ss_pred             ECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHH
Confidence            999999877542 11111 12222  345555 588888889999999999998774

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.75  E-value=2.4e-17  Score=144.88  Aligned_cols=137  Identities=18%  Similarity=0.230  Sum_probs=78.4

Q ss_pred             cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-------------ceEEccCCEECCCcEecC--------eEEcC
Q psy9164         219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-------------RSTILRDAIVKSHSWLEG--------CIIGW  277 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~ig~  277 (380)
                      ++++|++++.|++++.|++++.||++|.|++++.|.             ++.||++|.|++++.|..        +.||+
T Consensus        28 ~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~  107 (254)
T cd03351          28 PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGN  107 (254)
T ss_pred             CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECC
Confidence            333334444444444444455666666666666664             467888888888888853        66666


Q ss_pred             CCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-cceeecCcceeecceeEecCce
Q psy9164         278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLHMLGEDVIVQDEL  356 (380)
Q Consensus       278 ~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~~~~~~v~i~~~~  356 (380)
                      ++.|+++++|.     .++.||+++.|++++.+..+++||++++||.++.|..++.+ ++..|+.++++...   |++++
T Consensus       108 ~~~I~~~~~I~-----~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~---i~~~~  179 (254)
T cd03351         108 NNLLMAYVHVA-----HDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD---VPPYV  179 (254)
T ss_pred             CCEECCCCEEC-----CCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee---cCCCe
Confidence            66666666662     45666666666666666666666666666666555544322 22333333333322   56677


Q ss_pred             EEeceee
Q psy9164         357 YVNGGQV  363 (380)
Q Consensus       357 ~i~~~~v  363 (380)
                      ++++.+.
T Consensus       180 ~~~G~~~  186 (254)
T cd03351         180 IAAGNRA  186 (254)
T ss_pred             EEEccCC
Confidence            7665544

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.75  E-value=3.9e-17  Score=143.52  Aligned_cols=141  Identities=16%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-------------ceEEccCCEECCCcEecC-------
Q psy9164         213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-------------RSTILRDAIVKSHSWLEG-------  272 (380)
Q Consensus       213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-------  272 (380)
                      +.+.+.+++.|++++.|++++.|.+++.||++|.|++++.|+             +++||++|.|++++.|..       
T Consensus        21 ~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~  100 (254)
T TIGR01852        21 PFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGG  100 (254)
T ss_pred             CCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCC
Confidence            333444444445555555555555567777888888888885             578999999999998853       


Q ss_pred             -eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-cceeecCcceeeccee
Q psy9164         273 -CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLHMLGEDV  350 (380)
Q Consensus       273 -~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~~~~~~v  350 (380)
                       +.||+++.|+++++|.     .+|.||+++++++++.+..+++||++++||.++.|.+++.+ ++..|+.++++-..  
T Consensus       101 ~~~IG~~~~I~~~~~I~-----~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--  173 (254)
T TIGR01852       101 VTRIGNNNLLMAYSHIA-----HDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD--  173 (254)
T ss_pred             cEEECCCCEECCCCEEc-----cCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--
Confidence             4666666666666652     45666666666666666666666666666666655544322 22233333333222  


Q ss_pred             EecCceEEece
Q psy9164         351 IVQDELYVNGG  361 (380)
Q Consensus       351 ~i~~~~~i~~~  361 (380)
                       |++++++++.
T Consensus       174 -i~~~~~~~G~  183 (254)
T TIGR01852       174 -VPPYGLVEGN  183 (254)
T ss_pred             -cCCCcEEecC
Confidence             5666666544

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.74  E-value=3.1e-17  Score=130.27  Aligned_cols=125  Identities=25%  Similarity=0.347  Sum_probs=97.7

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----CeEEcCCCEECCceEEe
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRME  288 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~  288 (380)
                      .+.|++++|++|++.|-.++.|++++.|+++++++.+.  ....||+++.|.+++.++     .+.||++++||+++.| 
T Consensus        11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aiv-   87 (176)
T COG0663          11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVV-   87 (176)
T ss_pred             CCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEE-
Confidence            45677888888888888788888888887777776654  577899999999999884     5889999999999888 


Q ss_pred             eeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         289 NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       289 ~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                           .+|.||+++.||.++.+.+++.||+++.||+++.|..+.     .++++..++|.|++
T Consensus        88 -----HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k-----~~p~~~L~~G~Pak  140 (176)
T COG0663          88 -----HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK-----EIPGGSLVVGSPAK  140 (176)
T ss_pred             -----EEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCc-----CCCCCeEeecCcce
Confidence                 569999999999998888888888888877777775443     44455555555544

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.74  E-value=1.1e-16  Score=136.52  Aligned_cols=139  Identities=23%  Similarity=0.371  Sum_probs=84.5

Q ss_pred             CCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeee-------------
Q psy9164         226 TATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENI-------------  290 (380)
Q Consensus       226 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~-------------  290 (380)
                      ++.|++.+.|++++.||++|.|++++.|. ++.|+++|.|++++.+.. +.|++++.|++++.|...             
T Consensus         7 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~   86 (205)
T cd03352           7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVK   86 (205)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEE
Confidence            33333333333333334444444444442 344455555555555543 677777777777777431             


Q ss_pred             -eEecceEECccceeCcceEEc----cceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeee
Q psy9164         291 -TVLGECIIGWKCVVGQWVRME----NITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVL  364 (380)
Q Consensus       291 -~~~~~~~ig~~~~ig~~~~i~----~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~  364 (380)
                       ...+.+.|++++.++.++.+.    ..+.|++++.++.++.|++++.++...+-...+.+.++++|++++.|++++++
T Consensus        87 ~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v  165 (205)
T cd03352          87 IPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGI  165 (205)
T ss_pred             cCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEE
Confidence             112467888888888888875    35778888888888888777665554333333445668888888888888875

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.74  E-value=1.9e-17  Score=142.27  Aligned_cols=147  Identities=20%  Similarity=0.331  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc-----cCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-----KLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL   75 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-----~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~   75 (380)
                      ||+|+|++|.++|+++++|++++..+++.+++.+...     ..++.+.+..+.+..||+++++++++++   +++|+++
T Consensus        33 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~~~~~i---~~dflv~  109 (216)
T cd02507          33 LIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLI---RSDFLLL  109 (216)
T ss_pred             HHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHHHhhcC---CCCEEEE
Confidence            6899999999999999999999999999999976321     1234555666778999999999999999   7899999


Q ss_pred             eCCcccCCChHHHHHH--HHhcCCcEEEEEEEc--CC-------CCceeEEEECCC---CceeEEEeCCCC---------
Q psy9164          76 NSDIICDFPFKDLVSF--HKNHGKEGTIVVTQV--EE-------PSKYGVVLYNEH---GCIESFIEKPQE---------  132 (380)
Q Consensus        76 ~gD~i~~~~l~~~l~~--h~~~~~~~tl~~~~~--~~-------~~~~g~v~~d~~---~~v~~~~ek~~~---------  132 (380)
                      +||++++.++.++++.  +..+++.+++.+...  ++       ...++.+..|++   .++..+.+++.+         
T Consensus       110 ~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~  189 (216)
T cd02507         110 SCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKS  189 (216)
T ss_pred             eCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHH
Confidence            9999999999999965  444555556554443  22       345788888876   467777765442         


Q ss_pred             ---------CCCCeEEEEEEEeCHhHH
Q psy9164         133 ---------FVSNKINAGMYIFNPSVL  150 (380)
Q Consensus       133 ---------~~~~~~~~giyi~~~~~l  150 (380)
                               ..+++.|+|+|+|+++++
T Consensus       190 ~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         190 LLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             HHhcCCCEEEEcCcccccEEEecCcCC
Confidence                     345889999999999874

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.74  E-value=3e-17  Score=134.93  Aligned_cols=139  Identities=26%  Similarity=0.334  Sum_probs=115.5

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEe-----
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVL-----  293 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~-----  293 (380)
                      .+.|+|++.|.+++.|++++.||+.|.|++++.|     ++++.|+++++|+. +.||.++.|-+++.|+..++.     
T Consensus         3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~i-----g~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykg   77 (260)
T COG1043           3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEI-----GDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKG   77 (260)
T ss_pred             ccccCcceeeCCCCCcCCCCEECceEEECCCcEE-----CCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCC
Confidence            5678888888888888888888888888887776     67777777777754 899999999999999764432     


Q ss_pred             --cceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164         294 --GECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       294 --~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v  363 (380)
                        ...+||+++.|.+++.|..       -+.||++.++.+++.|..++++++..|-.|.+.+++.|.|+|.+++|+.+.
T Consensus        78 e~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~sa  156 (260)
T COG1043          78 EPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSA  156 (260)
T ss_pred             CceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcce
Confidence              3688999999999999953       356888888888888888888888888888899999999999999998876

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.72  E-value=1.1e-16  Score=131.21  Aligned_cols=119  Identities=23%  Similarity=0.298  Sum_probs=91.8

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN  289 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~  289 (380)
                      .+.+++.+.++++|++++.|++++.|+++++||++|.|++++.|.++++++++.|+.++.+.+++|++++.|++++.+.+
T Consensus        25 ~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~  104 (163)
T cd05636          25 IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITAN  104 (163)
T ss_pred             EECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcc
Confidence            34455566677888888888888888888999999999999999999999999999999999999999999999999865


Q ss_pred             eeEe-------------------cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         290 ITVL-------------------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       290 ~~~~-------------------~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ..+.                   .+++||++++||.++.+.+++.|+++++|++++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV  162 (163)
T cd05636         105 LRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV  162 (163)
T ss_pred             cCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence            3221                   14566666666666666655555555555555443

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.72  E-value=6e-16  Score=136.03  Aligned_cols=190  Identities=19%  Similarity=0.249  Sum_probs=135.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHh-hCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDI-LNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~-i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.++|+++|+|++++  +.+.+++..    .+.++.+..++...||+.....+... .. ..+.+++++||+
T Consensus        29 ll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~~~~~~~~gt~~~~~~~~~~~~~-~~~~vlv~~~D~  101 (245)
T PRK05450         29 MIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVMTSPDHPSGTDRIAEAAAKLGLA-DDDIVVNVQGDE  101 (245)
T ss_pred             HHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEECCCcCCCchHHHHHHHHhcCCC-CCCEEEEecCCC
Confidence            68999999999999999998763  667777743    35677666667777877654433332 21 134588899998


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEc------CCCCceeEEEECCCCceeEEEeCCCC----------CCCCeEEEE
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQV------EEPSKYGVVLYNEHGCIESFIEKPQE----------FVSNKINAG  141 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~------~~~~~~g~v~~d~~~~v~~~~ek~~~----------~~~~~~~~g  141 (380)
                        +....++++++.|++++++.++++.+.      .++..++++ +|++++++.|.|||..          ..+++.++|
T Consensus       102 Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~G  180 (245)
T PRK05450        102 PLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAFADSAPTPVYRHIG  180 (245)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCccccccCccccEEEE
Confidence              445668999999887766666666655      345556654 8888999999999731          235899999


Q ss_pred             EEEeCHhHHhhccCCCCCc----cc-chhhhhhcCCcEEEEEecc-EEEecCChhhHHHHHHH
Q psy9164         142 MYIFNPSVLDRIEIKPTSI----EK-EIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       142 iyi~~~~~l~~l~~~~~~~----~~-~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a~~~  198 (380)
                      +|+|+++.++.+.......    .. ++++.+.+..++.++..++ +|.++++|++|.+++..
T Consensus       181 iy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~  243 (245)
T PRK05450        181 IYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRAL  243 (245)
T ss_pred             EEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence            9999999998775322111    11 1233333444788999986 89999999999988754

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.72  E-value=7.4e-17  Score=138.15  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=42.6

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v  363 (380)
                      ..++||++|+||.++.|.++++||+++.||++++|+.++.+-....|  .+..+   .|+++++|-+|+.
T Consensus       172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g--~v~~~---~vp~~svv~~g~~  236 (269)
T TIGR00965       172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETG--EIHYG---RVPAGSVVVSGNL  236 (269)
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCC--ceeee---ecCCCcEEecCCe
Confidence            45788888888888888888888888888888888766644433211  11111   2666666655543

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.72  E-value=7.9e-17  Score=135.75  Aligned_cols=134  Identities=16%  Similarity=0.157  Sum_probs=96.4

Q ss_pred             eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecc-eE---
Q psy9164         222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE-CI---  297 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~-~~---  297 (380)
                      .+++++.|++++.|. ++.||++|.|+++|.|.+++||+++.|++++.+.++.||++|.|++++.|.+..+.-. ..   
T Consensus         4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~   82 (204)
T TIGR03308         4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH   82 (204)
T ss_pred             ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence            346677777788885 6889999999999999999999999999999999999999999999999965322100 00   


Q ss_pred             -------ECccceeCcc---eEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccc
Q psy9164         298 -------IGWKCVVGQW---VRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHK  367 (380)
Q Consensus       298 -------ig~~~~ig~~---~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~  367 (380)
                             .-+....+..   -....+++||++++||.++.|                  .++++||++++|+++++    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I------------------~~gv~Ig~~~~I~~gs~----  140 (204)
T TIGR03308        83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVI------------------LPGVTIGNGAVIAAGAV----  140 (204)
T ss_pred             cccccccccccccccccccccccCCCeEECCCCEECCCCEE------------------CCCCEECCCCEECCCCE----
Confidence                   0000000000   002345667777777777776                  55667888888888888    


Q ss_pred             cccCCCCCCCcc
Q psy9164         368 SIGSSVPEPQII  379 (380)
Q Consensus       368 ~v~~~vp~~~iv  379 (380)
                       |++|+|+++++
T Consensus       141 -v~~~i~~~~~~  151 (204)
T TIGR03308       141 -VTKDVAPYTIV  151 (204)
T ss_pred             -ECCCCCCCcEE
Confidence             88888888775

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.71  E-value=2.4e-16  Score=129.36  Aligned_cols=124  Identities=22%  Similarity=0.336  Sum_probs=82.8

Q ss_pred             eCCCCEECCCcEECCCcEECCCCEEcCCcEEe-----ceEEccCCEECCCcEec-----CeEEcCCCEECCceEEeeeeE
Q psy9164         223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRMENITV  292 (380)
Q Consensus       223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~~~~~  292 (380)
                      |++++.|++++.|.+++.||++|.|++++.|.     ++.||++|.|++++.+.     .+.||+++.|++++.+     
T Consensus         5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i-----   79 (167)
T cd00710           5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIV-----   79 (167)
T ss_pred             eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEE-----
Confidence            34444444444444455555555555555553     46788888888888883     4778888888888777     


Q ss_pred             ecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCC
Q psy9164         293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSS  372 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~  372 (380)
                      .+.+.||++++||.++.+. ++.||++++||+++.|.                   +++|+++++++++++     +.++
T Consensus        80 ~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-------------------~~~i~~~~~v~~~~~-----v~~~  134 (167)
T cd00710          80 HGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-------------------GVEIPPGRYVPAGAV-----ITSQ  134 (167)
T ss_pred             eCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-------------------CCEeCCCCEECCCCE-----EcCC
Confidence            3468888888888888876 36667776666666551                   245888888888888     5555


Q ss_pred             CCCC
Q psy9164         373 VPEP  376 (380)
Q Consensus       373 vp~~  376 (380)
                      .|++
T Consensus       135 ~~~~  138 (167)
T cd00710         135 TQAD  138 (167)
T ss_pred             Cccc
Confidence            5544

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.70  E-value=2.3e-16  Score=135.39  Aligned_cols=147  Identities=24%  Similarity=0.373  Sum_probs=115.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHcccc--ccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYR-AEQMEDELTVET--KKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS   77 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~--~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g   77 (380)
                      ||+|+|++|.++|+++|+|++++. .+++++++.+..  ......+.+..+.+.+||+++++.+.+.+   +++|+|++|
T Consensus        33 li~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i---~~d~lv~~~  109 (214)
T cd04198          33 MIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKI---KKDFLVLSC  109 (214)
T ss_pred             HHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhhc---CCCEEEEeC
Confidence            689999999999999999999975 467888886531  11234455566788999999999999998   788999999


Q ss_pred             CcccCCChHHHHHHHHhcCCcEEEEEEEcCCC-------------CceeEEEEC-CCCceeEEEeC--------------
Q psy9164          78 DIICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-------------SKYGVVLYN-EHGCIESFIEK--------------  129 (380)
Q Consensus        78 D~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-------------~~~g~v~~d-~~~~v~~~~ek--------------  129 (380)
                      |.+++.++.++++.|+++++.+|+++.+....             ..+.++..| ++++++.+...              
T Consensus       110 D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l  189 (214)
T cd04198         110 DLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLL  189 (214)
T ss_pred             ccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHH
Confidence            99999999999999999999999988775321             235667777 44677766542              


Q ss_pred             ---CC-CCCCCeEEEEEEEeCHhHH
Q psy9164         130 ---PQ-EFVSNKINAGMYIFNPSVL  150 (380)
Q Consensus       130 ---~~-~~~~~~~~~giyi~~~~~l  150 (380)
                         |. ...+++.|+|+|+|+++++
T Consensus       190 ~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         190 KRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             HhCCCEEEEcCcccceEEEEEeeeC
Confidence               22 3456899999999999874

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PLN02296 carbonate dehydratase

Probab=99.69  E-value=4e-16  Score=136.02  Aligned_cols=107  Identities=19%  Similarity=0.285  Sum_probs=73.0

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----------CeEEcCCCEEC
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----------GCIIGWKCVVG  282 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~ig~~~~ig  282 (380)
                      .+.++++++|+|++.+..++.|++++.|+++|.|...+  .+++||++|.|++++.|.           +++||++|.|+
T Consensus        52 ~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~--~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG  129 (269)
T PLN02296         52 APVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIG  129 (269)
T ss_pred             CCccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC--CceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEEC
Confidence            44555666666666655555555555555555444332  245788888888888874           57888888888


Q ss_pred             CceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       283 ~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ++|.+      .+|.||++++||.++.+.++++|++++.|++++.|
T Consensus       130 ~~avI------~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV  169 (269)
T PLN02296        130 HSAVL------HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALV  169 (269)
T ss_pred             CCcee------cCCEECCCcEECCCcEECCCeEECCCCEECCCCEE
Confidence            88877      56888888888888777777777777776666666

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.68  E-value=1.9e-15  Score=127.61  Aligned_cols=119  Identities=28%  Similarity=0.462  Sum_probs=78.1

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEee-
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMEN-  289 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~-  289 (380)
                      .+.+.+.+++.|++++.|++++.|. ++.|+++|.|++++.+.++++++++.|++++.+. ++.|++++.|++++.+.+ 
T Consensus        25 ~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s  103 (193)
T cd03353          25 DPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKS  103 (193)
T ss_pred             CCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecc
Confidence            3334444444555555555555554 3378888888888888899999999999999986 588888888777766643 


Q ss_pred             ----------eeEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCC
Q psy9164         290 ----------ITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       290 ----------~~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~  331 (380)
                                ..+.+++.||+++.||+++.+.+       .++||+++++|.++.+.++
T Consensus       104 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~  162 (193)
T cd03353         104 TIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP  162 (193)
T ss_pred             eEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC
Confidence                      23334566666666666665532       4556666666666655433

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.68  E-value=8.9e-16  Score=124.52  Aligned_cols=100  Identities=23%  Similarity=0.355  Sum_probs=71.8

Q ss_pred             CCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEe-----cCeEEcCCCEECCceEEeeeeEec
Q psy9164         224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWL-----EGCIIGWKCVVGQWVRMENITVLG  294 (380)
Q Consensus       224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~ig~~~~ig~~~~i~~~~~~~  294 (380)
                      ++++.+++++.|.+++.||++|.|+++|.|.    ++.||++|.|+++|.|     .+++|++++.|++++.+      .
T Consensus         4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i------~   77 (155)
T cd04745           4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAIL------H   77 (155)
T ss_pred             CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEE------E
Confidence            4444555555555566666666666666665    4788999999999988     55788888888888777      5


Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      ++.||++++||.++.+..++.|+++++||+++.+.
T Consensus        78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~  112 (155)
T cd04745          78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVK  112 (155)
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeC
Confidence            78888888888887777777777777766666653

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.68  E-value=6.6e-16  Score=133.78  Aligned_cols=84  Identities=14%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             EEcCCCEECCceEEeeee---EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         274 IIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      .||+++.|++++.|++..   ....++||++|+||.++.+..+++||+++.||+++.|+.++.+.+..  .+.++.+.  
T Consensus       152 ~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~--~g~v~~g~--  227 (272)
T PRK11830        152 QIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE--TGEVHYGR--  227 (272)
T ss_pred             EECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC--CCcEEeee--
Confidence            445555555555443211   11258888888888888888888888888888888887665444321  11222222  


Q ss_pred             EecCceEEecee
Q psy9164         351 IVQDELYVNGGQ  362 (380)
Q Consensus       351 ~i~~~~~i~~~~  362 (380)
                       |++++++-+|+
T Consensus       228 -vp~~svvv~g~  238 (272)
T PRK11830        228 -VPAGSVVVPGS  238 (272)
T ss_pred             -cCCCcEEecCc
Confidence             66666665554

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.67  E-value=1.1e-15  Score=127.14  Aligned_cols=105  Identities=21%  Similarity=0.339  Sum_probs=74.7

Q ss_pred             CccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEe-----cCeEEcCCCEECCce
Q psy9164         215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWL-----EGCIIGWKCVVGQWV  285 (380)
Q Consensus       215 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~ig~~~~ig~~~  285 (380)
                      +.|+++++|++++.+.      ++++||++|.|+++|.|.    .++||++|.|+++|.|     .+++|++++.|++++
T Consensus         9 p~i~~~~~I~~~a~I~------G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a   82 (192)
T TIGR02287         9 PVVHPEAYVHPTAVLI------GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGA   82 (192)
T ss_pred             CcCCCCcEECCCCEEE------eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCC
Confidence            3444555555555544      445555555555555553    5788899999988888     457888888888887


Q ss_pred             EEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164         286 RMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       286 ~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~  331 (380)
                      .|      .+++|++++.||.++.+.++++||+++.|++++.+..+
T Consensus        83 ~I------~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~  122 (192)
T TIGR02287        83 IL------HGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG  122 (192)
T ss_pred             EE------cCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence            77      77899999999998888887888888777777766443

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.67  E-value=8.1e-16  Score=124.60  Aligned_cols=99  Identities=28%  Similarity=0.396  Sum_probs=73.9

Q ss_pred             CCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecC-----eEEcCCCEECCceEEeeeeEec
Q psy9164         224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEG-----CIIGWKCVVGQWVRMENITVLG  294 (380)
Q Consensus       224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~i~~~~~~~  294 (380)
                      ++++.|++++.|.+++.+|++|.|++++.|.    +++||+++.|+++++|..     ++|++++.|+.+|.+      .
T Consensus         3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i------~   76 (153)
T cd04645           3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL------H   76 (153)
T ss_pred             cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEE------e
Confidence            4455555555555566666666666666665    468999999999999976     589999999988888      4


Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ++.+|++++|+.++.+..+++|+++++|++++.+
T Consensus        77 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v  110 (153)
T cd04645          77 GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLV  110 (153)
T ss_pred             eeEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            5788888888888877777777777777766666

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.67  E-value=8.4e-16  Score=124.13  Aligned_cols=100  Identities=20%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             CCCCEECCCcEECCCcEECCCCEEcCCcEEec----eEEccCCEECCCcEecC-----eEEcCCCEECCceEEeeeeEec
Q psy9164         224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR----STILRDAIVKSHSWLEG-----CIIGWKCVVGQWVRMENITVLG  294 (380)
Q Consensus       224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~i~~~~~~~  294 (380)
                      .+++.+.+++.|.+++.||++|.|++++.|..    .+||++|.|+++|.|..     ++||+++.|++++.+      .
T Consensus         4 ~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i------~   77 (154)
T cd04650           4 SPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVV------H   77 (154)
T ss_pred             CCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEE------E
Confidence            34444555555555566666666666666653    58888899988888854     788888888888887      5


Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      ++.||++++|+.++.+..+++|++++++++++.+.
T Consensus        78 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~  112 (154)
T cd04650          78 GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVT  112 (154)
T ss_pred             CcEECCCCEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence            67888888888888888778888888877777663

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.66  E-value=1.6e-15  Score=145.13  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=85.8

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECC-----CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECC
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGP-----NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQ  283 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~  283 (380)
                      .+.++..|.++++|++++.|+++|.|++     +++||++|.|++++.|. +++||++|.|++++.+.++.|++++.+++
T Consensus       270 ~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~  349 (446)
T PRK14353        270 VIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNH  349 (446)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECC
Confidence            4555666666677777777777777765     56788888888888887 78899999999999888888888888888


Q ss_pred             ceEEeeeeEecceEECccceeCcceEE-------ccceEECCCeEECcceEEcCC
Q psy9164         284 WVRMENITVLGECIIGWKCVVGQWVRM-------ENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       284 ~~~i~~~~~~~~~~ig~~~~ig~~~~i-------~~~~~ig~~~~ig~~~~i~~~  331 (380)
                      .+.+      +++.||+++.||.++.+       ..+++||++++||.++.|.++
T Consensus       350 ~~~i------~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~  398 (446)
T PRK14353        350 LTYI------GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP  398 (446)
T ss_pred             eeEE------cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence            8777      56777888888887766       224566666666666655444

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.66  E-value=9.8e-16  Score=125.01  Aligned_cols=101  Identities=25%  Similarity=0.341  Sum_probs=61.9

Q ss_pred             ceEEccCCEECCCcEec----CeEEcCCCEECCceEEeeeeE-----ecceEECccceeCcceEEccceEECCCeEECcc
Q psy9164         255 RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRMENITV-----LGECIIGWKCVVGQWVRMENITVLGEDVIVQDE  325 (380)
Q Consensus       255 ~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i~~~~~-----~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~  325 (380)
                      ++.||+++.|++++.+.    .+.||++|.|+++|.|.+...     ..++.||+++.+..++.+.. ++||++++||++
T Consensus        17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~   95 (164)
T cd04646          17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFESK   95 (164)
T ss_pred             ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-eEECCCCEEeCC
Confidence            34445555555555552    357777777777777754322     23456666666666666655 667777777776


Q ss_pred             eEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCC--CCCCCcc
Q psy9164         326 LYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSS--VPEPQII  379 (380)
Q Consensus       326 ~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~--vp~~~iv  379 (380)
                      +.|                  +++++|+++++||++++     |.++  +|+++++
T Consensus        96 a~I------------------~~gv~Ig~~~~Igagsv-----V~~~~~i~~~~vi  128 (164)
T cd04646          96 SFV------------------GKNVIITDGCIIGAGCK-----LPSSEILPENTVI  128 (164)
T ss_pred             CEE------------------CCCCEECCCCEEeCCeE-----ECCCcEECCCeEE
Confidence            666                  34555677777777776     5555  5666554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.66  E-value=1.8e-15  Score=126.34  Aligned_cols=123  Identities=22%  Similarity=0.328  Sum_probs=74.6

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----CeEEcCCCEECCceEEeee
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRMENI  290 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~~~  290 (380)
                      .++++++|++++.|..++.|++++.|+++|+|+.+.  +.++|+++|.|+++|.|+     +++|++++.||+++.+   
T Consensus        12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~--~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i---   86 (196)
T PRK13627         12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY--GRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAIL---   86 (196)
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCCEEecCC--ccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEE---
Confidence            344555555555554445555555555544443321  124666777777666663     4778888888887776   


Q ss_pred             eEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         291 TVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       291 ~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                         .+++||++++||.++.+.++++||+++.|++++.|..+     ..++++.++.|.|++
T Consensus        87 ---~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~-----~~ip~~~~~~G~Pa~  139 (196)
T PRK13627         87 ---HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAG-----FQGEKRQLLMGTPAR  139 (196)
T ss_pred             ---eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCC-----cCcCCCcEEEecCCE
Confidence               67888888888888777776666666665555555322     234445555555554

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.66  E-value=1.6e-15  Score=145.44  Aligned_cols=128  Identities=26%  Similarity=0.409  Sum_probs=79.7

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeee
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENI  290 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~  290 (380)
                      .+++.|.+++.|++++.|++++.|. ++.|+++|.|++++.+.+++|+++|.|++++.|. +++|+++|.|++++.+.+.
T Consensus       271 ~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~  349 (451)
T TIGR01173       271 DPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNA  349 (451)
T ss_pred             cCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCc
Confidence            3344444445555555555555553 5678888888888888889999999999999886 4888888888877766432


Q ss_pred             -----------eEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecceeecCccee
Q psy9164         291 -----------TVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHM  345 (380)
Q Consensus       291 -----------~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~  345 (380)
                                 ++.+++.||+++.||.++.+.+       +++||++++||.++.|.     ++.+||+++++
T Consensus       350 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~-----~~~~ig~~~~i  417 (451)
T TIGR01173       350 RIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLV-----APVKVGDGATI  417 (451)
T ss_pred             EECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEE-----CCcEECCCCEE
Confidence                       2233455666666666555533       34455555555544443     34445554433

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.65  E-value=9.9e-15  Score=127.69  Aligned_cols=186  Identities=20%  Similarity=0.283  Sum_probs=132.7

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.++ ++++|+|++++  +++++++.+    .+.++.+..+....|++ .+..+...+.  .+.|++++||.
T Consensus        29 li~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~~~~~~~~~g~~-~~~~a~~~~~--~d~~lv~~~D~   99 (238)
T PRK13368         29 MIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVVMTSDDHLSGTD-RLAEVMLKIE--ADIYINVQGDE   99 (238)
T ss_pred             HHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEEecCccCCCccH-HHHHHHHhCC--CCEEEEEcCCc
Confidence            689999999999 89999998864  677888754    35666666666666777 5666766663  46799999995


Q ss_pred             --ccCCChHHHHHHHHhcCC-cEEEEEEEcC------CCCceeEEEECCCCceeEEEeCCCC------CCCCeEEEEEEE
Q psy9164          80 --ICDFPFKDLVSFHKNHGK-EGTIVVTQVE------EPSKYGVVLYNEHGCIESFIEKPQE------FVSNKINAGMYI  144 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~-~~tl~~~~~~------~~~~~g~v~~d~~~~v~~~~ek~~~------~~~~~~~~giyi  144 (380)
                        +...++.++++.|++.+. .++.++.+.+      ++..+++ ..+++|+++.+.|+|..      ....+.++|+|+
T Consensus       100 P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~  178 (238)
T PRK13368        100 PMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDGESARYLKHVGIYA  178 (238)
T ss_pred             CcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCCCCCceeEEEEEEE
Confidence              678889999998876543 4455554433      2444444 44567899999875421      114478999999


Q ss_pred             eCHhHHhhccCC-CCC---ccc-chhhhhh-cCCcEEEEEeccEEEecCChhhHHHHHH
Q psy9164         145 FNPSVLDRIEIK-PTS---IEK-EIFPLMS-KEKQLYAMELKGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       145 ~~~~~l~~l~~~-~~~---~~~-~il~~l~-~~~~i~~~~~~~~~~~i~~~~~~~~a~~  197 (380)
                      |++++|..++.. ...   ++. +++ .++ ...++.++..+++|.|+++|+||..+..
T Consensus       179 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~  236 (238)
T PRK13368        179 FRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRA  236 (238)
T ss_pred             eCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence            999999887442 111   222 445 444 4446999988899999999999987743

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=1.4e-15  Score=135.57  Aligned_cols=130  Identities=24%  Similarity=0.407  Sum_probs=99.7

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEe
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRME  288 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~  288 (380)
                      .+.++..+.+++.|+.+++||++|.|. ++.|++++.|.+.+.+.++.++++|.||+.+++.. +.+++++.||.+|.+.
T Consensus       276 vI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK  354 (460)
T COG1207         276 VIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVK  354 (460)
T ss_pred             EEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEe
Confidence            344555556666666666666666664 68888888888888889999999999999999965 8888888888777764


Q ss_pred             -----------eeeEecceEECccceeCcceEE-------ccceEECCCeEECcceEEcCCeeecceeecCccee
Q psy9164         289 -----------NITVLGECIIGWKCVVGQWVRM-------ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHM  345 (380)
Q Consensus       289 -----------~~~~~~~~~ig~~~~ig~~~~i-------~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~  345 (380)
                                 ..+|.+++.||.++.||.++..       +..++||++++||.|+.+     +.+.+||+++.+
T Consensus       355 ~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~L-----VAPV~IGd~a~i  424 (460)
T COG1207         355 KATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQL-----VAPVTIGDGATI  424 (460)
T ss_pred             cccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcE-----EeeEEecCCcEE
Confidence                       3577899999999999999887       456788888888888776     445555555443

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.65  E-value=3.6e-15  Score=132.51  Aligned_cols=187  Identities=20%  Similarity=0.219  Sum_probs=133.3

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC--CCCcEEEEe
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK--SQEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~--~~~~~lv~~   76 (380)
                      ||+|++++|..+ ++++++|++++. .+.+++++.+    ....+.++.++...||++++..+..++..  .++.++|++
T Consensus        35 li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~  110 (274)
T cd02509          35 LLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPEENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLP  110 (274)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCCceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEec
Confidence            689999999999 499999999974 4667777754    12345566688899999999999988842  245689999


Q ss_pred             CCcccC--CChHHHHHHHHh---cCCcEEEEEEEcCCCCceeEEEECCCC-----ceeEEEeCCCCC--------CCCeE
Q psy9164          77 SDIICD--FPFKDLVSFHKN---HGKEGTIVVTQVEEPSKYGVVLYNEHG-----CIESFIEKPQEF--------VSNKI  138 (380)
Q Consensus        77 gD~i~~--~~l~~~l~~h~~---~~~~~tl~~~~~~~~~~~g~v~~d~~~-----~v~~~~ek~~~~--------~~~~~  138 (380)
                      ||+++.  .+|.++++.+.+   .++.+|+...+.++..+||++..+++.     +|.+|.|||...        ...+.
T Consensus       111 ~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~w  190 (274)
T cd02509         111 SDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLW  190 (274)
T ss_pred             chhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEE
Confidence            999776  457777765543   566788888887777899999998653     899999999732        12478


Q ss_pred             EEEEEEeCHhHHh-hccC----------------CC---CCcccchhhh----------hhcCCcEEEEEeccEEEecCC
Q psy9164         139 NAGMYIFNPSVLD-RIEI----------------KP---TSIEKEIFPL----------MSKEKQLYAMELKGFWMDVGQ  188 (380)
Q Consensus       139 ~~giyi~~~~~l~-~l~~----------------~~---~~~~~~il~~----------l~~~~~i~~~~~~~~~~~i~~  188 (380)
                      ++|+|+|+++.+. .++.                ..   ..+..+.++.          |-+..++...+.+..|.|+|+
T Consensus       191 NsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~  270 (274)
T cd02509         191 NSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGS  270 (274)
T ss_pred             ECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccC
Confidence            9999999977652 2211                00   0111122332          223346777888888999998


Q ss_pred             hhh
Q psy9164         189 PRD  191 (380)
Q Consensus       189 ~~~  191 (380)
                      +.+
T Consensus       271 w~~  273 (274)
T cd02509         271 WDA  273 (274)
T ss_pred             ccc
Confidence            654

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.64  E-value=1.7e-15  Score=120.42  Aligned_cols=124  Identities=21%  Similarity=0.303  Sum_probs=97.4

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ...|+++++|.++++|-.++.||+++.|+++++|+    ||.         +...||+++.|.++|.|+...- ..+.||
T Consensus        11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlR----gD~---------~~I~IG~~tNIQDg~ViH~~~~-~p~~IG   76 (176)
T COG0663          11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLR----GDV---------EPIRIGARTNIQDGVVIHADPG-YPVTIG   76 (176)
T ss_pred             CCCCCCceEECCCCEEEEeEEECCCCEECCceEEE----ccC---------CceEECCCceecCCeEEecCCC-CCeEEC
Confidence            45688899999998888899999999998888886    333         3458999999999999976333 578888


Q ss_pred             ccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       300 ~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +++.||.++.+.. +.||+++.||-+++|                  .++++||++++||+||++|.+.   -+|+++++
T Consensus        77 ~~vtIGH~aivHG-c~Ig~~~lIGmgA~v------------------ldga~IG~~~iVgAgalV~~~k---~~p~~~L~  134 (176)
T COG0663          77 DDVTIGHGAVVHG-CTIGDNVLIGMGATV------------------LDGAVIGDGSIVGAGALVTPGK---EIPGGSLV  134 (176)
T ss_pred             CCcEEcCccEEEE-eEECCCcEEecCceE------------------eCCcEECCCcEEccCCcccCCc---CCCCCeEe
Confidence            8888888888765 888888888888888                  5667799999999999865543   45666554

>PLN02472 uncharacterized protein

Probab=99.64  E-value=4e-15  Score=128.07  Aligned_cols=106  Identities=15%  Similarity=0.278  Sum_probs=67.4

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----------CeEEcCCCEECCc
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----------GCIIGWKCVVGQW  284 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~ig~~~~ig~~  284 (380)
                      .++.++++.|++.+..+++|++++.|+++++|..+.  ...+||+++.|+++|.|+           +++||++|.||++
T Consensus        61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~--~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~  138 (246)
T PLN02472         61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDL--NKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAY  138 (246)
T ss_pred             ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCC--cceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCC
Confidence            344555555555555555444444444444443220  135777788887777773           4677777777777


Q ss_pred             eEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         285 VRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       285 ~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      |.|      .+|.||+++.||.++.+.++++|++++.||+++.+.
T Consensus       139 s~L------~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~  177 (246)
T PLN02472        139 SLL------RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLP  177 (246)
T ss_pred             cEE------CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence            776      678888888888887777777777777666666653

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.63  E-value=2.8e-15  Score=125.15  Aligned_cols=122  Identities=18%  Similarity=0.246  Sum_probs=90.5

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ...+++++.|++++.|.+++.||++|.|+++|+|+...             ..++|++++.|+++|.|+.... .+++++
T Consensus        10 ~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~-------------~~i~Ig~~~~Ig~~~~I~~~~~-~~siIg   75 (196)
T PRK13627         10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY-------------GRLIVQAGANLQDGCIMHGYCD-TDTIVG   75 (196)
T ss_pred             CCccCCCeEECCCCEEECceEECCCCEECCCCEEecCC-------------ccEEECCCCEECCCCEEeCCCC-CCCEEC
Confidence            45678888888888877778888888888777775322             1246777777777777754332 368888


Q ss_pred             ccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCC--CCCC
Q psy9164         300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSV--PEPQ  377 (380)
Q Consensus       300 ~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~v--p~~~  377 (380)
                      +++.||.++.+.. ++||++++||.++.+                  ..+++||++++|++||+     |++++  |+++
T Consensus        76 ~~~~Ig~~a~i~g-~vIG~~v~IG~ga~V------------------~~g~~IG~~s~Vgags~-----V~~~~~ip~~~  131 (196)
T PRK13627         76 ENGHIGHGAILHG-CVIGRDALVGMNSVI------------------MDGAVIGEESIVAAMSF-----VKAGFQGEKRQ  131 (196)
T ss_pred             CCCEECCCcEEee-EEECCCCEECcCCcc------------------CCCcEECCCCEEcCCCE-----EeCCcCcCCCc
Confidence            8888888887654 678888888888777                  45567999999999999     77766  7777


Q ss_pred             cc
Q psy9164         378 II  379 (380)
Q Consensus       378 iv  379 (380)
                      ++
T Consensus       132 ~~  133 (196)
T PRK13627        132 LL  133 (196)
T ss_pred             EE
Confidence            64

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=1.6e-14  Score=119.84  Aligned_cols=191  Identities=20%  Similarity=0.285  Sum_probs=128.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEc-cCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAV-SYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~-~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|+++|++++++|+ ++..+.++.++.+.  .+..++.++..++..+|+.+|+.|++++   +++|++++||+
T Consensus        33 ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~--~~~~~iv~N~~y~ktN~~~Sl~~akd~~---~~~fii~~sD~  107 (239)
T COG1213          33 IIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY--PFNAKIVINSDYEKTNTGYSLLLAKDYM---DGRFILVMSDH  107 (239)
T ss_pred             eHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC--CcceEEEeCCCcccCCceeEEeeehhhh---cCcEEEEeCCE
Confidence            689999999999999999999 89999999999773  3367788888888889999999999999   78899999999


Q ss_pred             ccCCCh-HHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC-
Q psy9164          80 ICDFPF-KDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI-  155 (380)
Q Consensus        80 i~~~~l-~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~-  155 (380)
                      ++...+ +.+++.    ... ++.+...  .....-.....+++|++..+.++-.  .-+..++|++.|+++.+..+.+ 
T Consensus       108 vye~~~~e~l~~a----~~~-~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~  180 (239)
T COG1213         108 VYEPSILERLLEA----PGE-GLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYEL  180 (239)
T ss_pred             eecHHHHHHHHhC----cCC-cEEEeccccccccCceeEEEecCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHH
Confidence            999764 333332    111 2222211  1111111234457889988877644  3466899999999998865522 


Q ss_pred             ---CCCCcccchhhhhh-cCCcEEEEEeccEEEecCChhhHHHHHHHHHhhh
Q psy9164         156 ---KPTSIEKEIFPLMS-KEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSL  203 (380)
Q Consensus       156 ---~~~~~~~~il~~l~-~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~  203 (380)
                         ....-..++.+... ............+|.++++|+++.++.+......
T Consensus       181 ~~e~~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~  232 (239)
T COG1213         181 LVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI  232 (239)
T ss_pred             HhhhhhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence               11111111111111 1111111111357999999999999877666544

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.61  E-value=1.5e-14  Score=138.94  Aligned_cols=115  Identities=22%  Similarity=0.319  Sum_probs=71.0

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEee---
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMEN---  289 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~---  289 (380)
                      ++.|.+++.|++++.|+++|.| .+++|+++|.|++++.+.++++++++.|++++.+. ++.||+++.|++++.|.+   
T Consensus       282 ~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i  360 (481)
T PRK14358        282 GVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARL  360 (481)
T ss_pred             CcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCcee
Confidence            3333344444444444444444 24567778888888888788888888888888885 588888888888666432   


Q ss_pred             --------eeEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEc
Q psy9164         290 --------ITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVN  329 (380)
Q Consensus       290 --------~~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~  329 (380)
                              ....++++||++|.||.++.+.+       ++.||++++||.++.+.
T Consensus       361 ~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~  415 (481)
T PRK14358        361 DAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLI  415 (481)
T ss_pred             cCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEc
Confidence                    23345666677777776666643       23444444444444443

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.61  E-value=1e-14  Score=139.77  Aligned_cols=118  Identities=25%  Similarity=0.368  Sum_probs=80.1

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEe
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRME  288 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~  288 (380)
                      .+.+++.|.+++.|++++.|+++|.|. ++.|+++|.|++++.+.+++|++++.|++++.+. ++.+++++.||+++.+.
T Consensus       273 ~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~  351 (456)
T PRK09451        273 EIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK  351 (456)
T ss_pred             EEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeee
Confidence            445556666667777777777777774 7788888888888888888888899998888885 67888888877776664


Q ss_pred             ee-----------eEecceEECccceeCcceEEcc-------ceEECCCeEECcceEE
Q psy9164         289 NI-----------TVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYV  328 (380)
Q Consensus       289 ~~-----------~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i  328 (380)
                      +.           ...+++.||++|.||+++.+.+       .++||++++||.++.+
T Consensus       352 ~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i  409 (456)
T PRK09451        352 KARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQL  409 (456)
T ss_pred             ceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEE
Confidence            33           3334566666666666665532       2344444444444443

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.60  E-value=2.4e-14  Score=113.87  Aligned_cols=112  Identities=14%  Similarity=0.212  Sum_probs=64.3

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec---------CeEEcCCCEE
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE---------GCIIGWKCVV  281 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~ig~~~~i  281 (380)
                      .+++.+.++++|++++.|.+.+.+..++.||++|.|++++.|. ++.|+++|.|+.++.+.         +++|++++.|
T Consensus         5 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~I   84 (139)
T cd03350           5 PPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFI   84 (139)
T ss_pred             CCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEE
Confidence            4455555566666666666666666666666666666666664 56677777777766663         3566666666


Q ss_pred             CCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecce
Q psy9164         282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK  337 (380)
Q Consensus       282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~  337 (380)
                      ++++.|     ..++.||+++.|+++      +.|.+++.|+++   ++|+++-+.
T Consensus        85 g~~a~I-----~~gv~Ig~~~~Ig~g------~~V~~~~~I~~~---~~~~~v~~~  126 (139)
T cd03350          85 GANCEV-----VEGVIVGKGAVLAAG------VVLTQSTPIYDR---ETGEIYYGR  126 (139)
T ss_pred             CCCCEE-----CCCCEECCCCEEcCC------CEEcCCeEeccc---CcccEEecc
Confidence            666665     234444444444444      444444444444   555554444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.60  E-value=1.4e-14  Score=124.23  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=11.4

Q ss_pred             ceeCcceEEccceEECCCeEECcceEEc
Q psy9164         302 CVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       302 ~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      +.||++|.|+.++.|.+++.||++++|+
T Consensus       174 ViIgDnv~IGa~a~I~~GV~IG~gavIG  201 (269)
T TIGR00965       174 TIIEDNCFIGARSEIVEGVIVEEGSVIS  201 (269)
T ss_pred             eEECCCCEECCCCEEcCCCEECCCCEEe
Confidence            3444444444444444444444444443

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PLN02296 carbonate dehydratase

Probab=99.60  E-value=9.3e-15  Score=127.50  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             ccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee-----E
Q psy9164         218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT-----V  292 (380)
Q Consensus       218 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~-----~  292 (380)
                      .....+++++.|.+++.+.+++.||++|.|+++|+|....             .++.||+++.|+++|.|+...     .
T Consensus        50 ~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~-------------~~I~IG~~~~I~d~~vI~~~~~~~~g~  116 (269)
T PLN02296         50 DKAPVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKTNLSGK  116 (269)
T ss_pred             CCCCccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC-------------CceEECCCCEECCCCEEEeCCCcccCC
Confidence            3455677777777777777677777777777777664211             245777888888888775321     1


Q ss_pred             ecceEECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164         293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~  332 (380)
                      ..+++||+++.||.++.+. +++||++++||.++.|..|+
T Consensus       117 ~~~siIG~~v~IG~~avI~-g~~Igd~v~IG~ga~I~~gv  155 (269)
T PLN02296        117 VLPTIIGDNVTIGHSAVLH-GCTVEDEAFVGMGATLLDGV  155 (269)
T ss_pred             CCCcEeCCCCEECCCceec-CCEECCCcEECCCcEECCCe
Confidence            2357888888888888774 47788888888887774443

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.59  E-value=2.9e-14  Score=136.72  Aligned_cols=86  Identities=23%  Similarity=0.359  Sum_probs=61.2

Q ss_pred             ECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccc
Q psy9164         235 IGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI  313 (380)
Q Consensus       235 i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~  313 (380)
                      |++++.||++|.|+++|.|. +++||++|.|++++.|.+++||++|.|++++.+      .+++|++++.||+++.+..+
T Consensus       265 i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i------~~~~i~~~~~ig~~~~i~~~  338 (459)
T PRK14355        265 IDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVL------EDSVVGDDVAIGPMAHLRPG  338 (459)
T ss_pred             ECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEE------eCCEECCCCEECCCCEECCC
Confidence            33344444444444444443 456788888888888888999999999998888      56777777777777777777


Q ss_pred             eEECCCeEECcce
Q psy9164         314 TVLGEDVIVQDEL  326 (380)
Q Consensus       314 ~~ig~~~~ig~~~  326 (380)
                      +.|++++.||+++
T Consensus       339 ~~i~~~~~ig~~~  351 (459)
T PRK14355        339 TELSAHVKIGNFV  351 (459)
T ss_pred             CEeCCCCEECCCc
Confidence            7777777777654

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.57  E-value=5.6e-14  Score=133.78  Aligned_cols=191  Identities=21%  Similarity=0.309  Sum_probs=133.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHccccccCCcE-EEEeecCCCCCCchHHHHhHHhhCC--CCCc-EEEE
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRA-EQMEDELTVETKKLGIS-LVFSHENEPLGTAGPLALAKDILNK--SQEP-FFVL   75 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~-i~~~~~~~~~gt~~al~~a~~~i~~--~~~~-~lv~   75 (380)
                      ||+|+++.|..+++++++|+++... +.+++.+.+    .+.+ ..+..++...||+.++..+..++..  ..++ ++|+
T Consensus        35 ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~----~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl  110 (468)
T TIGR01479        35 MLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE----IGKLASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVL  110 (468)
T ss_pred             HHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH----cCCCcceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence            6899999999999999999988533 455555543    2333 2477789999999999887766621  1344 8999


Q ss_pred             eCCcccC--CChHHHHHHH---HhcCCcEEEEEEEcCCCCceeEEEECC------CCceeEEEeCCCCCC--------CC
Q psy9164          76 NSDIICD--FPFKDLVSFH---KNHGKEGTIVVTQVEEPSKYGVVLYNE------HGCIESFIEKPQEFV--------SN  136 (380)
Q Consensus        76 ~gD~i~~--~~l~~~l~~h---~~~~~~~tl~~~~~~~~~~~g~v~~d~------~~~v~~~~ek~~~~~--------~~  136 (380)
                      +||++..  .+|.++++.+   .+.++.+|+...+.+++.+||++..++      .++|..|.|||....        ..
T Consensus       111 ~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~  190 (468)
T TIGR01479       111 AADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDY  190 (468)
T ss_pred             cCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCe
Confidence            9997553  3488887765   344566777777766778999999873      258999999986321        35


Q ss_pred             eEEEEEEEeCHhH------------HhhccC-----CC----CCcccchhh---------hhhcC-CcEEEEEeccEEEe
Q psy9164         137 KINAGMYIFNPSV------------LDRIEI-----KP----TSIEKEIFP---------LMSKE-KQLYAMELKGFWMD  185 (380)
Q Consensus       137 ~~~~giyi~~~~~------------l~~l~~-----~~----~~~~~~il~---------~l~~~-~~i~~~~~~~~~~~  185 (380)
                      +.|+|+|+|+++.            ++.+..     ..    ..+..++++         .++++ .+++..+.+..|.|
T Consensus       191 ~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~D  270 (468)
T TIGR01479       191 YWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSD  270 (468)
T ss_pred             EEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccc
Confidence            7999999999544            333321     01    112234455         23444 46888888888999


Q ss_pred             cCChhhHHHH
Q psy9164         186 VGQPRDFLKG  195 (380)
Q Consensus       186 i~~~~~~~~a  195 (380)
                      +|+++++.+.
T Consensus       271 vGsw~~l~~~  280 (468)
T TIGR01479       271 VGSWSALWEI  280 (468)
T ss_pred             cCCHHHHHHh
Confidence            9999988654

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.56  E-value=4.1e-14  Score=135.62  Aligned_cols=109  Identities=23%  Similarity=0.368  Sum_probs=56.0

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeee-------
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENIT-------  291 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~-------  291 (380)
                      ++.+++++.|++++.|. ++.|+++|+|+ ++.+.+++|++++.|++++.|. +++||++|.|++++.+.+..       
T Consensus       280 ~~~ig~~~~I~~~~~I~-~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i  357 (450)
T PRK14360        280 NTVIGSGCRIGPGSLIE-NSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKV  357 (450)
T ss_pred             CcEECCCCEECCCcEEE-EEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEe
Confidence            33333333333333332 33444555543 2344566677777777777775 47777777777666654322       


Q ss_pred             ----EecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcC
Q psy9164         292 ----VLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNG  330 (380)
Q Consensus       292 ----~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~  330 (380)
                          +.+++.||++|.||+++.+..       +++||++++||.++.|.+
T Consensus       358 ~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~  407 (450)
T PRK14360        358 NHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVA  407 (450)
T ss_pred             ccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeC
Confidence                223445555555555555432       344455555444444443

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.55  E-value=8.6e-14  Score=112.89  Aligned_cols=102  Identities=21%  Similarity=0.410  Sum_probs=80.0

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECC---CcEECCCCEEcCCcEE-----eceEEccCCEECCCcEecCeEEcCCCEE
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGP---NVTIGPGVVIEGGVCI-----KRSTILRDAIVKSHSWLEGCIIGWKCVV  281 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~ig~~~~i  281 (380)
                      .+.+.+.+.++++|++++.|++++.|.+   .+.||++|.|+++|.|     .+++|++++.|+.++.+.+++||+++.|
T Consensus         8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~I   87 (155)
T cd04745           8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALV   87 (155)
T ss_pred             EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEE
Confidence            4556677777888888888888888875   4899999999999999     4699999999999999999999999999


Q ss_pred             CCceEEeeeeEecceEECccceeCcceEEccceEE
Q psy9164         282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVL  316 (380)
Q Consensus       282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~i  316 (380)
                      +.++.|.     .++.||+++.|++++.+..++.|
T Consensus        88 g~~~~I~-----~g~~Ig~~~~Ig~~s~v~~~~~i  117 (155)
T cd04745          88 GMNAVVM-----DGAVIGEESIVGAMAFVKAGTVI  117 (155)
T ss_pred             CCCCEEe-----CCCEECCCCEECCCCEeCCCCEe
Confidence            9988882     34556666665555444443333

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.55  E-value=8.2e-14  Score=133.72  Aligned_cols=127  Identities=26%  Similarity=0.467  Sum_probs=82.3

Q ss_pred             CcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEE
Q psy9164         232 GCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRM  310 (380)
Q Consensus       232 ~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i  310 (380)
                      ++.+++++.|++++.|..++.|. ++.||++|.|+++|.|.+++||++|.|+++|.+      .+++||+++.||+++.+
T Consensus       263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i------~~~~ig~~~~Ig~~~~i  336 (456)
T PRK14356        263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHL------EGAEVGDGCSVGPYARL  336 (456)
T ss_pred             cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEE------cccceecccEECCceEE
Confidence            34444555555555555555554 677899999999999999999999999999998      56666666666666666


Q ss_pred             ccceEECCCeEECcceE-----EcCCe------eecceeecCcceeec------------ceeEecCceEEeceeee
Q psy9164         311 ENITVLGEDVIVQDELY-----VNGGQ------VLPHKSIGSSLHMLG------------EDVIVQDELYVNGGQVL  364 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~-----i~~~~------v~~~~~i~~~~~~~~------------~~v~i~~~~~i~~~~v~  364 (380)
                      .++++||+++.||.++.     ++.++      .+++..||+++.+..            .+++||+++.+|+++.+
T Consensus       337 ~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i  413 (456)
T PRK14356        337 RPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTAL  413 (456)
T ss_pred             CCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEE
Confidence            66666666666665543     33333      233334555433221            23677788888777764

>PRK10502 putative acyl transferase; Provisional

Probab=99.55  E-value=2.8e-14  Score=118.54  Aligned_cols=112  Identities=21%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             eCCCCEECCCcEEC--CCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164         223 VDPTATIGPGCRIG--PNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW  300 (380)
Q Consensus       223 i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~  300 (380)
                      +++++.|++++.|.  .+..||++|.|++++.|.+.              ..+.||++|.|+++++|....+.       
T Consensus        54 iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~--------------~~v~IG~~~~I~~~~~I~~~~h~-------  112 (182)
T PRK10502         54 IGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNL--------------GEITIGAHCVISQKSYLCTGSHD-------  112 (182)
T ss_pred             cCCCcEEcCCEEEecCCeEEECCCeEECCCceeccc--------------CceEECCCcEECCCeEEECCCCC-------
Confidence            33344444444332  13455555555555555310              13456666666666666321110       


Q ss_pred             cceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       301 ~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                       ..-.....+...++||++++||+++.|                  .++++||++++||++++     |++|+|+++++
T Consensus       113 -~~~~~~~~~~~~i~Igd~~~Ig~~a~I------------------~~Gv~Ig~~~vIga~sv-----V~~~v~~~~v~  167 (182)
T PRK10502        113 -YSDPHFDLNTAPIVIGEGCWLAADVFV------------------APGVTIGSGAVVGARSS-----VFKSLPANTIC  167 (182)
T ss_pred             -CcCCCcccccCCEEEcCCcEEcCCCEE------------------cCCCEECCCCEECCCCE-----EecccCCCcEE
Confidence             000011112334667777777777776                  45667888888888888     88888888765

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.54  E-value=1.3e-13  Score=112.42  Aligned_cols=52  Identities=17%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      ++.||+++.|++++.+      .++.+++++.||+++.++.+++|+++++|++++.+.
T Consensus        72 ~v~Ig~~~~Ig~~~~i------~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~  123 (161)
T cd03359          72 PLHIGDYVFIGENCVV------NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVP  123 (161)
T ss_pred             CeEECCccEECCCCEE------EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEEC
Confidence            3567777777777777      456666666666666666666666666666665553

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.54  E-value=1e-13  Score=132.70  Aligned_cols=87  Identities=22%  Similarity=0.309  Sum_probs=53.2

Q ss_pred             EEcCCcEE-----eceEEccCCEECCCcEec-CeEEcCCCEECCceEEee-----------eeEecceEECccceeCcce
Q psy9164         246 VIEGGVCI-----KRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMEN-----------ITVLGECIIGWKCVVGQWV  308 (380)
Q Consensus       246 ~i~~~~~i-----~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~-----------~~~~~~~~ig~~~~ig~~~  308 (380)
                      .|+++|.|     .+++|++++.|++++++. ++.||+++.|++++.+.+           .++.+++.||+++.||+++
T Consensus       292 ~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~  371 (448)
T PRK14357        292 EIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGT  371 (448)
T ss_pred             EECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCc
Confidence            44555544     467788888888888774 477787777777765532           2223455666666666666


Q ss_pred             EEc-------cceEECCCeEECcceEEcCCe
Q psy9164         309 RME-------NITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       309 ~i~-------~~~~ig~~~~ig~~~~i~~~~  332 (380)
                      .+.       .+++||++++||.++.|.+++
T Consensus       372 ~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv  402 (448)
T PRK14357        372 ITCNYDGKKKNPTFIEDGAFIGSNSSLVAPV  402 (448)
T ss_pred             ccccccccccCCcEECCCCEECCCCEEeCCc
Confidence            543       235566666666665554443

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.53  E-value=5.5e-14  Score=116.18  Aligned_cols=78  Identities=18%  Similarity=0.275  Sum_probs=45.5

Q ss_pred             EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164         274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~  353 (380)
                      .||++|.|+++|.|....+.     .+......+..+...+.||+++|||.++.|                  .++++||
T Consensus        95 ~IGd~v~I~~~v~i~t~~h~-----~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I------------------~~gv~IG  151 (183)
T PRK10092         95 RIGDNCMLAPGVHIYTATHP-----LDPVARNSGAELGKPVTIGNNVWIGGRAVI------------------NPGVTIG  151 (183)
T ss_pred             EECCCCEECCCCEEEcCCCC-----CChHHccccceecCCeEECCCcEECCCCEE------------------CCCCEEC
Confidence            66777777777777432111     111111122233344566666666666666                  4556677


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||++++     |++|+|+++++
T Consensus       152 ~~~vIgagsv-----V~~di~~~~i~  172 (183)
T PRK10092        152 DNVVVASGAV-----VTKDVPDNVVV  172 (183)
T ss_pred             CCCEECCCCE-----EccccCCCcEE
Confidence            8888888887     77777777765

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.53  E-value=1.9e-13  Score=131.28  Aligned_cols=130  Identities=22%  Similarity=0.353  Sum_probs=82.6

Q ss_pred             EECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEcc
Q psy9164         234 RIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN  312 (380)
Q Consensus       234 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~  312 (380)
                      .|++++.||++|.|++++.|. ++.||++|.|++++.|.+++||++|.|++ +.+      .++.||+++.||+++.+..
T Consensus       261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i------~~~~ig~~~~Ig~~~~i~~  333 (458)
T PRK14354        261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVI------EESKVGDNVTVGPFAHLRP  333 (458)
T ss_pred             EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEE------eCCEECCCcEECCceEecC
Confidence            445555555566666666654 56778888888888888888888888884 455      3566666666666666665


Q ss_pred             ceEECCCeEECcceEE-----------cCCeeecceeecCcceeec------------ceeEecCceEEeceeee-cccc
Q psy9164         313 ITVLGEDVIVQDELYV-----------NGGQVLPHKSIGSSLHMLG------------EDVIVQDELYVNGGQVL-PHKS  368 (380)
Q Consensus       313 ~~~ig~~~~ig~~~~i-----------~~~~v~~~~~i~~~~~~~~------------~~v~i~~~~~i~~~~v~-p~~~  368 (380)
                      +++||+++.||+++.|           +..+.+.+..||+++.+..            -+++|++++.+|+++.+ |...
T Consensus       334 ~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~  413 (458)
T PRK14354        334 GSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVT  413 (458)
T ss_pred             CCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcE
Confidence            6666666666554443           3333344445555543321            15778899999888864 4433


Q ss_pred             cc
Q psy9164         369 IG  370 (380)
Q Consensus       369 v~  370 (380)
                      +.
T Consensus       414 ig  415 (458)
T PRK14354        414 VG  415 (458)
T ss_pred             EC
Confidence            33

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.52  E-value=1.7e-13  Score=116.11  Aligned_cols=26  Identities=19%  Similarity=0.474  Sum_probs=19.3

Q ss_pred             eeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +++|+++++|+++++     |.+++|+++++
T Consensus       168 ~~~ig~~~~v~~~~~-----v~~~~~~~~~~  193 (197)
T cd03360         168 GVTIGAGAIIGAGAV-----VTKDVPDGSVV  193 (197)
T ss_pred             CCEECCCCEECCCCE-----EcCCCCCCCEE
Confidence            345777777888888     77888887765

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.51  E-value=3.1e-13  Score=130.31  Aligned_cols=117  Identities=23%  Similarity=0.387  Sum_probs=64.8

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCce-------
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWV-------  285 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~-------  285 (380)
                      ++.|.++++|++++.|++++.|. +++||++|.|++ +.+.+++|++++.||+++.+. +++||+++.+|.++       
T Consensus       283 ~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I  360 (482)
T PRK14352        283 GTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATI  360 (482)
T ss_pred             CcEEeecCEECCCCEECCCCEEe-cCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEE
Confidence            33333444444444444444442 344455555542 344567777777777777774 56676666655443       


Q ss_pred             ----EEeeeeEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCe
Q psy9164         286 ----RMENITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       286 ----~i~~~~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~  332 (380)
                          .+....+.+++.||++|.||.++.+.+       +++||++++||.++.|.++.
T Consensus       361 ~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~  418 (482)
T PRK14352        361 GRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPV  418 (482)
T ss_pred             CCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCC
Confidence                333333345667777777777766642       35566666666665554443

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.51  E-value=2.1e-13  Score=105.69  Aligned_cols=114  Identities=17%  Similarity=0.169  Sum_probs=70.6

Q ss_pred             CCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccc
Q psy9164         224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKC  302 (380)
Q Consensus       224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~  302 (380)
                      ++++.|++++.|++++.||++|.|++++.|. +++|+++|.|++++.+.+..+.... +...+.+      .++.+|+++
T Consensus         2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~~------~~~~Ig~~~   74 (119)
T cd03358           2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWEL------KGTTVKRGA   74 (119)
T ss_pred             CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccc-ccccccc------CCcEECCCc
Confidence            4566666666666667777777777777774 6777777777777766554443322 3333444      677778888


Q ss_pred             eeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         303 VVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       303 ~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +||+++.+.+++.|++++.|++++.+      .+ .++++..+.|.|++
T Consensus        75 ~Ig~~~~v~~~~~ig~~~~i~~~~~v------~~-~i~~~~~~~G~pa~  116 (119)
T cd03358          75 SIGANATILPGVTIGEYALVGAGAVV------TK-DVPPYALVVGNPAR  116 (119)
T ss_pred             EECcCCEEeCCcEECCCCEEccCCEE------eC-cCCCCeEEecCcce
Confidence            88877776666666666665555554      33 25555555555543

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.51  E-value=2e-13  Score=130.12  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             CCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECcccee
Q psy9164         225 PTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVV  304 (380)
Q Consensus       225 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~i  304 (380)
                      ++..+.+++.|.+.+.||++|.|+++|.|++++|+++|.|++ +.+.+++||+++.|++++.|.+..+..++.++... +
T Consensus       252 ~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~  329 (430)
T PRK14359        252 ETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-L  329 (430)
T ss_pred             CeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-e
Confidence            455667777777788888888888888888899999999976 77788899999999888888433333333222211 1


Q ss_pred             CcceEEccceEECCCeEECcceEEcCCe
Q psy9164         305 GQWVRMENITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       305 g~~~~i~~~~~ig~~~~ig~~~~i~~~~  332 (380)
                       +++.+++.+.|+ +++||+++.|++++
T Consensus       330 -~~~~i~~~~~i~-d~~Ig~~~~ig~~~  355 (430)
T PRK14359        330 -NGVKAGHLSYLG-DCEIDEGTNIGAGT  355 (430)
T ss_pred             -cccccccccccc-CCEECCCCEECCCc
Confidence             233333333332 24444455554444

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.51  E-value=9.1e-14  Score=116.24  Aligned_cols=44  Identities=16%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         313 ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       313 ~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .++||+++|||.+++|                  .++++||++++||+||+     |++|+|+++++
T Consensus       131 pi~IGd~v~IG~~~~I------------------~~gv~IG~~~vIgagsv-----V~kdvp~~~v~  174 (203)
T PRK09527        131 PITIGNNVWIGSHVVI------------------NPGVTIGDNSVIGAGSV-----VTKDIPPNVVA  174 (203)
T ss_pred             CeEECCCcEECCCCEE------------------cCCCEECCCCEECCCCE-----EcccCCCCcEE
Confidence            3556666666666555                  45556777777777777     66777776654

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.51  E-value=4.1e-13  Score=108.46  Aligned_cols=106  Identities=15%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             ccccCCCccccceeeCCCCEECCCcEECCC---cEECCCCEEcCCcEEec-----eEEccCCEECCCcEecCeEEcCCCE
Q psy9164         209 KLLKEGDGIVGNVLVDPTATIGPGCRIGPN---VTIGPGVVIEGGVCIKR-----STILRDAIVKSHSWLEGCIIGWKCV  280 (380)
Q Consensus       209 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~ig~~~~  280 (380)
                      ..+.+.+.+.+++.+++++.|++++.|.+.   ++||++|.|+++|.|..     ++|++++.|++++.+.+++|++++.
T Consensus         7 ~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~   86 (154)
T cd04650           7 AYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVI   86 (154)
T ss_pred             eEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCE
Confidence            345666777788888888888888888755   69999999999999974     8999999999999999999999999


Q ss_pred             ECCceEEeeeeEecceEECccceeCcceEEccceEECCC
Q psy9164         281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED  319 (380)
Q Consensus       281 ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~  319 (380)
                      |+.++.+     ..++.+|++++++.++.+.++..++++
T Consensus        87 Ig~~~~i-----~~~~~Ig~~~~vg~~~~v~~g~~i~~~  120 (154)
T cd04650          87 VGMGAIL-----LNGAKIGDHVIIGAGAVVTPGKEIPDY  120 (154)
T ss_pred             EcCCCEE-----eCCCEECCCCEECCCCEECCCcEeCCC
Confidence            9999888     345666666666666555444444333

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.50  E-value=2.6e-13  Score=115.55  Aligned_cols=25  Identities=20%  Similarity=0.476  Sum_probs=15.4

Q ss_pred             eEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         350 VIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       350 v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++|+++++|+++++     +.+++|+++++
T Consensus       172 ~~i~~~~~i~~~~~-----v~~~~~~~~~~  196 (201)
T TIGR03570       172 VTIGAGAIVGAGAV-----VTKDIPDGGVV  196 (201)
T ss_pred             CEECCCCEECCCCE-----ECCcCCCCCEE
Confidence            34566666666666     66666666554

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.50  E-value=5.1e-13  Score=109.66  Aligned_cols=113  Identities=21%  Similarity=0.383  Sum_probs=87.6

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECC----CcEECCCCEEcCCcEEe-----ceEEccCCEECCCcEecC-eEEcCCC
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGP----NVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHSWLEG-CIIGWKC  279 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-~~ig~~~  279 (380)
                      .+.+++.+.+++.+++++.|++++.|+.    ++.||++|.|++++.+.     ++.||+++.|+.++.+.. +.||++|
T Consensus        10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~   89 (167)
T cd00710          10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNC   89 (167)
T ss_pred             EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCC
Confidence            4556666667777777777777777764    36889999999999884     678999999999999976 9999999


Q ss_pred             EECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       280 ~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      .||.++.|      .++.||+++.||.++.+. ++.|+++..+++++++.
T Consensus        90 ~Ig~~~~I------~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~  132 (167)
T cd00710          90 FIGFRSVV------FNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVIT  132 (167)
T ss_pred             EECCCCEE------ECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEc
Confidence            99999998      467888888888887774 35666666666555554

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.50  E-value=1.4e-13  Score=106.77  Aligned_cols=105  Identities=17%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             CCEEcCCcEEe-ceEEccCCEECCCcEe-cCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164         244 GVVIEGGVCIK-RSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI  321 (380)
Q Consensus       244 ~~~i~~~~~i~-~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  321 (380)
                      +|.|++++.|. ++.|+++|.|++++.+ .++.||++|.|++++.+.+.      .+.. ..+...+.+. +++|+++++
T Consensus         4 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~------~~~~-~~~~~~~~~~-~~~Ig~~~~   75 (119)
T cd03358           4 NCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTND------LYPR-SKIYRKWELK-GTTVKRGAS   75 (119)
T ss_pred             CCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecC------CCCc-cccccccccC-CcEECCCcE
Confidence            33333333333 3444555566655555 35677777777777777332      1111 1222233333 367777777


Q ss_pred             ECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         322 VQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       322 ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ||+++.+                  ..+++|++++.|+++++     +++++|+++++
T Consensus        76 Ig~~~~v------------------~~~~~ig~~~~i~~~~~-----v~~~i~~~~~~  110 (119)
T cd03358          76 IGANATI------------------LPGVTIGEYALVGAGAV-----VTKDVPPYALV  110 (119)
T ss_pred             ECcCCEE------------------eCCcEECCCCEEccCCE-----EeCcCCCCeEE
Confidence            7777777                  44556889999999999     88899998876

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.49  E-value=3.5e-13  Score=112.18  Aligned_cols=105  Identities=16%  Similarity=0.328  Sum_probs=80.4

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECC---CcEECCCCEEcCCcEE-----eceEEccCCEECCCcEecCeEEcCCCEE
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGP---NVTIGPGVVIEGGVCI-----KRSTILRDAIVKSHSWLEGCIIGWKCVV  281 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~ig~~~~i  281 (380)
                      .+.+++.+.++++|++++.|++++.|.+   .++||++|.|+++|.|     .+++|++++.|++++.|++|+|++++.|
T Consensus        16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~I   95 (192)
T TIGR02287        16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALV   95 (192)
T ss_pred             EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEE
Confidence            4566677777788888888888888753   4788999999999999     3799999999999999999999999999


Q ss_pred             CCceEEeeeeEecceEECccceeCcceEEccceEECCC
Q psy9164         282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED  319 (380)
Q Consensus       282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~  319 (380)
                      |.++.+.     .++.||+++.+++++.+.++..+.++
T Consensus        96 G~ga~I~-----~g~~IG~~s~Vgags~V~~~~~ip~~  128 (192)
T TIGR02287        96 GMNAVVM-----DGAVIGENSIVAASAFVKAGAEMPAQ  128 (192)
T ss_pred             CCCcccC-----CCeEECCCCEEcCCCEECCCCEECCC
Confidence            9998883     34556666666655444444443333

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.49  E-value=4.8e-13  Score=116.09  Aligned_cols=19  Identities=26%  Similarity=0.389  Sum_probs=7.6

Q ss_pred             cccceeeCCCCEECCCcEE
Q psy9164         217 IVGNVLVDPTATIGPGCRI  235 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i  235 (380)
                      +.+++++++++.|++++.|
T Consensus       106 I~p~a~V~~ga~Ig~gavI  124 (272)
T PRK11830        106 VVPGAVVRRGAYIAPNVVL  124 (272)
T ss_pred             EcCCeEECCCCEECCCcEE
Confidence            3334444444444444333

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.49  E-value=8.7e-13  Score=102.21  Aligned_cols=106  Identities=23%  Similarity=0.277  Sum_probs=62.3

Q ss_pred             ccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecc--
Q psy9164         218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE--  295 (380)
Q Consensus       218 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~--  295 (380)
                      .+.+.+.+++.||+++.|.+++++..++.|++++.|.. .++.           ++.|+++|.||+++.|. ....++  
T Consensus         5 ~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~-----------~a~Ighd~~IG~~~~I~-~~l~G~~~   71 (147)
T cd04649           5 ADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISS-----------GVIVGKGSDVGGGASIM-GTLSGGGN   71 (147)
T ss_pred             cCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccC-----------CEEECCCCEECCCCEEE-EECCCCcc
Confidence            34444555555555555555555555555555544421 1222           34555666666666664 222344  


Q ss_pred             --eEECccceeCcceEEccceEECCCeEECcceEEcCCeeeccee
Q psy9164         296 --CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKS  338 (380)
Q Consensus       296 --~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~  338 (380)
                        +.||++++||.++.|  ++.||+++.||+++.+..++.+.+..
T Consensus        72 ~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~~~~  114 (147)
T cd04649          72 NVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKVTLPD  114 (147)
T ss_pred             cCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEEEEcc
Confidence              788888888888888  57777777777777776666555443

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.47  E-value=6.5e-13  Score=94.92  Aligned_cols=65  Identities=48%  Similarity=1.046  Sum_probs=60.1

Q ss_pred             eCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164         223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i  287 (380)
                      +++++.|++++.|+++++|+++|.|++++.|.++++++++.|++++++.++++++++.+++++.+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~   66 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRL   66 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEE
Confidence            57888999999999999999999999999999999999999999999999999999999998888

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.47  E-value=1e-12  Score=106.49  Aligned_cols=104  Identities=19%  Similarity=0.327  Sum_probs=78.8

Q ss_pred             ccccCCCccccceeeCCCCEECCCcEECCC---cEECCCCEEcCCcEEec-----eEEccCCEECCCcEecCeEEcCCCE
Q psy9164         209 KLLKEGDGIVGNVLVDPTATIGPGCRIGPN---VTIGPGVVIEGGVCIKR-----STILRDAIVKSHSWLEGCIIGWKCV  280 (380)
Q Consensus       209 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~ig~~~~  280 (380)
                      ..+.+++.+.+++++++++.|++++.|.++   ++||++|.|++++.|..     ++|++++.|+.++.+.++.|++++.
T Consensus         6 ~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~   85 (153)
T cd04645           6 AFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCL   85 (153)
T ss_pred             eEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCE
Confidence            455667777778888888888888888643   58999999999998875     5899999999999998899999999


Q ss_pred             ECCceEEeeeeEecceEECccceeCcceEEccceEEC
Q psy9164         281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLG  317 (380)
Q Consensus       281 ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig  317 (380)
                      |++++.+.     +++.++++++++.++.+..++.++
T Consensus        86 Ig~~~~v~-----~~~~ig~~~~ig~~~~v~~~~~i~  117 (153)
T cd04645          86 IGMGAIIL-----DGAVIGKGSIVAAGSLVPPGKVIP  117 (153)
T ss_pred             ECCCCEEc-----CCCEECCCCEECCCCEECCCCEeC
Confidence            99888882     355566666666554444433333

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.46  E-value=6.8e-13  Score=113.95  Aligned_cols=105  Identities=20%  Similarity=0.255  Sum_probs=70.0

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEe
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRME  288 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~  288 (380)
                      .+.+++.+.++++|++++.|++++.|+++++||++|.|++++.|. +++||++|.|+.++.+.+. +      +++.   
T Consensus        88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~-~------~~~~---  157 (231)
T TIGR03532        88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGV-I------EPPS---  157 (231)
T ss_pred             EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccc-c------cccc---
Confidence            455666677777888888888888887788888888888888885 7788888888877766541 1      1111   


Q ss_pred             eeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         289 NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       289 ~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                          ..++.||++++||.++.+.+++.||++++|++++.|
T Consensus       158 ----~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV  193 (231)
T TIGR03532       158 ----AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIV  193 (231)
T ss_pred             ----CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence                134556677777766665555555555555555544

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>KOG1461|consensus

Probab=99.46  E-value=1.8e-13  Score=127.29  Aligned_cols=97  Identities=24%  Similarity=0.354  Sum_probs=81.5

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeee
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENI  290 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~  290 (380)
                      +..++.+..++.||.++.||.++.|. |++||+||.||.+++|.++.||++|+||+||+|.+|+|++++.|+++|.+.  
T Consensus       324 ~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~--  400 (673)
T KOG1461|consen  324 LSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILK--  400 (673)
T ss_pred             ehhhccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccC--
Confidence            34467788899999999999999995 999999999999999999999999999999999999999999999999993  


Q ss_pred             eEecceEECccceeCcceEEccc
Q psy9164         291 TVLGECIIGWKCVVGQWVRMENI  313 (380)
Q Consensus       291 ~~~~~~~ig~~~~ig~~~~i~~~  313 (380)
                         .++++|.++.+|++-.+..+
T Consensus       401 ---~g~vl~~~VVv~~~~~l~~n  420 (673)
T KOG1461|consen  401 ---PGSVLGFGVVVGRNFVLPKN  420 (673)
T ss_pred             ---CCcEEeeeeEeCCCcccccc
Confidence               35666666555555444444

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.45  E-value=5.2e-13  Score=109.82  Aligned_cols=79  Identities=14%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164         273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV  352 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i  352 (380)
                      ..||+++.|+++|.|.+..+.    + ++.....+......+.||+++|||++++|                  .++++|
T Consensus        83 i~IG~~v~Ig~~~~I~~~~h~----~-~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I------------------~~gv~I  139 (169)
T cd03357          83 VTIGDNVLIGPNVQIYTAGHP----L-DPEERNRGLEYAKPITIGDNVWIGGGVII------------------LPGVTI  139 (169)
T ss_pred             EEECCCCEECCCCEEEeCCCC----C-ChhHccccceecCCcEeCCCEEECCCCEE------------------eCCCEE
Confidence            466666666666666432110    0 00000122233445667777777777766                  566778


Q ss_pred             cCceEEeceeeeccccccCCCCCCCcc
Q psy9164         353 QDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |++++||++++     |++|+|+++++
T Consensus       140 g~~~~Vgagav-----V~~~vp~~~vv  161 (169)
T cd03357         140 GDNSVIGAGSV-----VTKDIPANVVA  161 (169)
T ss_pred             CCCCEECCCCE-----EccccCCCcEE
Confidence            89999999998     88888888876

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.45  E-value=5.8e-13  Score=111.66  Aligned_cols=122  Identities=15%  Similarity=0.137  Sum_probs=62.4

Q ss_pred             EECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec---CeEEcCCCEECCceEEeeeeEec--ceEECccceeC--c
Q psy9164         234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE---GCIIGWKCVVGQWVRMENITVLG--ECIIGWKCVVG--Q  306 (380)
Q Consensus       234 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---~~~ig~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig--~  306 (380)
                      .+++++.++.+|++... ......||+++.|++++.+.   ++.||++|.|++++.|.+..+..  ....-.+..+.  .
T Consensus        45 ~iG~~v~i~~~~ri~~~-~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~  123 (192)
T PRK09677         45 NFGEGFTSGVGLRLDAF-GRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDM  123 (192)
T ss_pred             EECCceEECCCeEEEec-CCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhh
Confidence            44444444444444211 01245677777777777774   57888888888888885422200  00000000000  0


Q ss_pred             ceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         307 WVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       307 ~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .-.-...+.||++++||+++.|                  .++++||++++||++++     |++++|+++++
T Consensus       124 ~~~~~~~v~Ig~~~~ig~~~~i------------------~~g~~Ig~~~~Iga~s~-----v~~~i~~~~~~  173 (192)
T PRK09677        124 RTLESSAVVIGQRVWIGENVTI------------------LPGVSIGNGCIVGANSV-----VTKSIPENTVI  173 (192)
T ss_pred             cccccCCeEEcCCcEECCCCEE------------------cCCCEECCCCEECCCCE-----ECcccCCCcEE
Confidence            0001123555666665555555                  34455666666666666     66666666654

>PLN02472 uncharacterized protein

Probab=99.45  E-value=1.6e-12  Score=112.09  Aligned_cols=123  Identities=12%  Similarity=0.160  Sum_probs=73.0

Q ss_pred             eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee-----Eecce
Q psy9164         222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT-----VLGEC  296 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~-----~~~~~  296 (380)
                      .+++++.|.+++.+.+++.||++|.|+++++|.    |+...         ..||+++.|+++|.|+...     ...++
T Consensus        61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavir----gd~~~---------I~IG~~t~Ig~~~vI~~~~~~~~~i~~~t  127 (246)
T PLN02472         61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLR----GDLNK---------ITVGFCSNVQERCVLHAAWNSPTGLPAET  127 (246)
T ss_pred             ccCCCCEECCCCEEecCEEECCCCEEcCCCEEe----cCCcc---------eEECCCCEECCCCEEeecCccccCCCCCc
Confidence            456666666666666666666666666665442    32221         2667777777777775432     12467


Q ss_pred             EECccceeCcceEEccceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEecCceEEe
Q psy9164         297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQDELYVN  359 (380)
Q Consensus       297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~~~~~i~  359 (380)
                      .||+++.||.++.+. +++|+++++||.+++|..++++++. .|+.++ ++.++..|+++.+..
T Consensus       128 vIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs-vV~~g~~Ip~g~~~~  189 (246)
T PLN02472        128 LIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEGSLVETHSILEAGS-VLPPGRRIPTGELWA  189 (246)
T ss_pred             EECCCCEECCCcEEC-CeEEcCCCEECCCCEECCCCEECCCCEECCCC-EECCCCEeCCCCEEE
Confidence            777777777777774 4777777777777777776665553 233332 333344455554444

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.43  E-value=3e-12  Score=104.45  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=16.6

Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~  332 (380)
                      +.||++++|++++.+.. +.|++++.||++++|+.++
T Consensus        73 v~Ig~~~~Ig~~~~i~~-~~Ig~~v~Ig~~~~Ig~~~  108 (161)
T cd03359          73 LHIGDYVFIGENCVVNA-AQIGSYVHIGKNCVIGRRC  108 (161)
T ss_pred             eEECCccEECCCCEEEe-eEEcCCcEECCCCEEcCCC
Confidence            34445555555544433 3444444444444444433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.42  E-value=5.5e-12  Score=107.33  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ++.||+++.+++++.+     .+++.+|+++++|.++.+.+++.|+++++||+++++
T Consensus       135 ~~~ig~~~~i~~~~~i-----~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v  186 (201)
T TIGR03570       135 DCVIGDYVHIAPGVTL-----SGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVV  186 (201)
T ss_pred             CCEECCCCEECCCCEE-----eCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence            3556666666666666     235666777777777666665666666555555554

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.42  E-value=1.7e-12  Score=93.00  Aligned_cols=78  Identities=26%  Similarity=0.435  Sum_probs=60.4

Q ss_pred             eCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccc
Q psy9164         223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKC  302 (380)
Q Consensus       223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~  302 (380)
                      |++++.|++++.|. ++.|+++|.|++++.|.++++++++.|++++.+.++++++++.|++++.+      .++++|+++
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v------~~~ii~~~~   74 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKL------KDCLVGSGY   74 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEE------ccCEECCCc
Confidence            56677777777775 68888888888888888888888888888888888888888888888887      455555555


Q ss_pred             eeCcc
Q psy9164         303 VVGQW  307 (380)
Q Consensus       303 ~ig~~  307 (380)
                      .|+++
T Consensus        75 ~i~~~   79 (81)
T cd04652          75 RVEAG   79 (81)
T ss_pred             EeCCC
Confidence            55443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.42  E-value=5.6e-12  Score=106.77  Aligned_cols=51  Identities=22%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      +.||+++.|++++.+     .+++.||++++||.++.+.++++||++++||+++.|
T Consensus       133 ~~ig~~~~i~~~~~i-----~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v  183 (197)
T cd03360         133 CVIGDFVHIAPGVVL-----SGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV  183 (197)
T ss_pred             CEECCCCEECCCCEE-----cCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            456666666666665     235666777777777666666666666655555554

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.42  E-value=2.3e-12  Score=99.88  Aligned_cols=14  Identities=21%  Similarity=0.339  Sum_probs=8.6

Q ss_pred             eEecCceEEeceee
Q psy9164         350 VIVQDELYVNGGQV  363 (380)
Q Consensus       350 v~i~~~~~i~~~~v  363 (380)
                      +.||++++||+|++
T Consensus        90 v~IG~~~vIGaGsv  103 (147)
T cd04649          90 ISLGDNCIVEAGLY  103 (147)
T ss_pred             EEECCCCEECCCCE
Confidence            34666666666666

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.41  E-value=1.4e-12  Score=93.07  Aligned_cols=64  Identities=25%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             eCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164         223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i  287 (380)
                      |+++++|++++.|. ++.|+++|.|++++.|.++.+++++.|++++++.+++|++++.|++++.+
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i   65 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTI   65 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEE
Confidence            34444444444443 34455555555555554444444444444444444444444444443333

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.41  E-value=6.7e-13  Score=115.24  Aligned_cols=50  Identities=10%  Similarity=0.052  Sum_probs=25.4

Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV  352 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i  352 (380)
                      ..||++++||.++.|..++.||++++||++++|      .+ .+++++++.|.|.++
T Consensus       194 p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV------~~-dVp~~~~v~G~PArv  243 (273)
T PRK11132        194 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVV------LQ-PVPPHTTAAGVPARI  243 (273)
T ss_pred             CEECCCcEEcCCCEEcCCCEECCCCEECCCCEE------Cc-ccCCCcEEEecCcEE
Confidence            445555555555444444444444444444333      33 366666666665553

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.40  E-value=2.2e-12  Score=92.06  Aligned_cols=65  Identities=31%  Similarity=0.475  Sum_probs=45.4

Q ss_pred             eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164         222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i  287 (380)
                      +|++++.|++++.|.+ +.||++|.|++++.+.+++|++++.|++++++.++++++++.|++++.+
T Consensus         1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i   65 (79)
T cd03356           1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRV   65 (79)
T ss_pred             CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEE
Confidence            3566667777777764 7777777777777777777777777777777777777776666666666

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.40  E-value=2.7e-12  Score=91.56  Aligned_cols=78  Identities=28%  Similarity=0.404  Sum_probs=66.9

Q ss_pred             EECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCC
Q psy9164         240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED  319 (380)
Q Consensus       240 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~  319 (380)
                      +||++|.|++++.+.+++|+++|.|++++.+.+++|++++.|++++.+      .++++++++.|++++.+.++++++++
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i------~~svv~~~~~i~~~~~i~~~~~ig~~   74 (79)
T cd03356           1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVI------VDSIIGDNAVIGENVRVVNLCIIGDD   74 (79)
T ss_pred             CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEE------ECCEECCCCEECCCCEEcCCeEECCC
Confidence            367788888888888888999999999999999999999999999999      57788888888888888777777777


Q ss_pred             eEEC
Q psy9164         320 VIVQ  323 (380)
Q Consensus       320 ~~ig  323 (380)
                      +.|+
T Consensus        75 ~~i~   78 (79)
T cd03356          75 VVVE   78 (79)
T ss_pred             eEEC
Confidence            7765

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.38  E-value=6.4e-12  Score=105.98  Aligned_cols=117  Identities=12%  Similarity=0.088  Sum_probs=73.0

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCe-EEcCCCEECCceEEe
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGC-IIGWKCVVGQWVRME  288 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~-~ig~~~~ig~~~~i~  288 (380)
                      .+++++.+. ++.|++++.|++++.|. ++.||++|.|++++.+.++.||++|.|++++.+... ...++....+.+...
T Consensus        10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~   87 (204)
T TIGR03308        10 TLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRA   87 (204)
T ss_pred             eECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccc
Confidence            455666664 46788888888888885 889999999999999999999999999988877431 111111111111100


Q ss_pred             --------------eeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         289 --------------NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       289 --------------~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                                    ......++.||++++||.++.|..++.||+++.||+++.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v  141 (204)
T TIGR03308        88 AMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVV  141 (204)
T ss_pred             ccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence                          0001245666666666666555555555555554444444

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.37  E-value=1.5e-11  Score=106.54  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=47.4

Q ss_pred             CeEEcCCCEECCceEEeeeeEecc----eEECccceeCcceEEccceEECCCeEECcceEEcCCeeec
Q psy9164         272 GCIIGWKCVVGQWVRMENITVLGE----CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP  335 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~~~~~----~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~  335 (380)
                      +++||++|.||.+|.| ..+..++    +.||++|+||.++.+  +..||++++||++++|.+++.+.
T Consensus       224 GavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~  288 (341)
T TIGR03536       224 GVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVA  288 (341)
T ss_pred             CCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEE
Confidence            3566666666666666 3344566    889999999999998  78999999999999998887543

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.36  E-value=4.6e-12  Score=95.85  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             ccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         311 ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ...+.||++++||.++.|                  .++++|+++++|+++++     |++|+|+++++
T Consensus        54 ~~~v~Ig~~~~ig~~~~i------------------~~g~~Ig~~~~i~~gs~-----v~~~~~~~~~~   99 (107)
T cd05825          54 TAPIVIGDGAWVAAEAFV------------------GPGVTIGEGAVVGARSV-----VVRDLPAWTVY   99 (107)
T ss_pred             cCCEEECCCCEECCCCEE------------------CCCCEECCCCEECCCCE-----EeCcCCCCCEE
Confidence            445667777777777776                  55667888888888888     88888888765

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.36  E-value=6e-12  Score=90.11  Aligned_cols=78  Identities=21%  Similarity=0.381  Sum_probs=61.3

Q ss_pred             ECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCe
Q psy9164         241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV  320 (380)
Q Consensus       241 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~  320 (380)
                      ||+++.|++++.+.++.|++++.|++++.|.++++++++.|++++.+      .++++++++.|++++.+.+ +++++++
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l------~~svi~~~~~i~~~~~v~~-~ii~~~~   74 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTL------ENCIIGNGAVIGEKCKLKD-CLVGSGY   74 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEE------eccEEeCCCEECCCCEEcc-CEECCCc
Confidence            67778888888888888999999999999999999999999999988      5677777777777777643 5555555


Q ss_pred             EECcc
Q psy9164         321 IVQDE  325 (380)
Q Consensus       321 ~ig~~  325 (380)
                      .|+++
T Consensus        75 ~i~~~   79 (81)
T cd04652          75 RVEAG   79 (81)
T ss_pred             EeCCC
Confidence            54443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.36  E-value=4.8e-12  Score=106.70  Aligned_cols=46  Identities=22%  Similarity=0.351  Sum_probs=40.7

Q ss_pred             cceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164         312 NITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       312 ~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      ..++||++||||++++|                  .++|+||+|++||++||     |+||+|+++|+.
T Consensus       123 ~~v~IG~~vwIG~~a~I------------------lpGV~IG~gavigagsV-----Vtkdvp~~~iv~  168 (190)
T COG0110         123 GPVTIGEDVWIGAGAVI------------------LPGVTIGEGAVIGAGSV-----VTKDVPPYGIVA  168 (190)
T ss_pred             CCeEECCCeEEcCccEE------------------CCCEEECCCcEEeeCCE-----EeCccCCCeEEe
Confidence            34888999999999888                  67788999999999999     999999998863

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.35  E-value=1.2e-11  Score=92.94  Aligned_cols=77  Identities=23%  Similarity=0.286  Sum_probs=53.8

Q ss_pred             CEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCc
Q psy9164         227 ATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQ  306 (380)
Q Consensus       227 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~  306 (380)
                      ++|++++.|. +++||++|.|+ ++.|.++++++++.|+++++|.++++++++.|++++.+      .++++|+++.|++
T Consensus         2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i------~~siig~~~~Ig~   73 (104)
T cd04651           2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI------RRAIIDKNVVIPD   73 (104)
T ss_pred             ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE------EeEEECCCCEECC
Confidence            4566666663 67788888887 77888888888888888888888888888888877777      3444454444444


Q ss_pred             ceEEc
Q psy9164         307 WVRME  311 (380)
Q Consensus       307 ~~~i~  311 (380)
                      ++.+.
T Consensus        74 ~~~v~   78 (104)
T cd04651          74 GVVIG   78 (104)
T ss_pred             CCEEC
Confidence            44443

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.35  E-value=9e-12  Score=88.89  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=64.8

Q ss_pred             ECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCe
Q psy9164         241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV  320 (380)
Q Consensus       241 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~  320 (380)
                      ||++|.|++++.|.++++++++.|+++++|.++.+++++.|++++++      .++.+++++.|++++.+..++++++++
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i------~~~~i~~~~~i~~~~~i~~~~~v~~~~   75 (79)
T cd05787           2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTI------HHSIVADGAVIGKGCTIPPGSLISFGV   75 (79)
T ss_pred             ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEE------eCcEEcCCCEECCCCEECCCCEEeCCc
Confidence            67788888888888889999999999999999999999999999999      577778888888777776666666666


Q ss_pred             EECc
Q psy9164         321 IVQD  324 (380)
Q Consensus       321 ~ig~  324 (380)
                      .||+
T Consensus        76 ~ig~   79 (79)
T cd05787          76 VIGD   79 (79)
T ss_pred             EeCc
Confidence            6553

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.33  E-value=5.5e-12  Score=101.64  Aligned_cols=28  Identities=18%  Similarity=0.325  Sum_probs=18.2

Q ss_pred             cceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         347 GEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       347 ~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .++.+||+++.|||+||     |.||||+++.|
T Consensus       135 LG~I~IGd~akIGA~sV-----VlkdVP~~~tv  162 (194)
T COG1045         135 LGNIEIGDNAKIGAGSV-----VLKDVPPNATV  162 (194)
T ss_pred             EcceEECCCCEECCCce-----EccCCCCCceE
Confidence            44466777777777777     66666666554

>PLN02694 serine O-acetyltransferase

Probab=99.33  E-value=4.9e-12  Score=109.76  Aligned_cols=100  Identities=21%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             ceeeCCCCEECCCcEECC--CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceE
Q psy9164         220 NVLVDPTATIGPGCRIGP--NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI  297 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~  297 (380)
                      ++.|++++.||+++.|..  +++||++|.||++|.|.     .++++|           ..   +..+.      .++++
T Consensus       160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~-----~~VtLG-----------g~---g~~~~------~r~pi  214 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSIL-----HHVTLG-----------GT---GKACG------DRHPK  214 (294)
T ss_pred             eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEe-----ecceeC-----------Cc---ccccC------CCccE
Confidence            556777777777666654  44555555554444432     222222           10   11111      13455


Q ss_pred             ECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         298 IGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      ||++++||.++.|..++.||++++||++++|.      + .+++++++.|.|.+
T Consensus       215 IGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~------k-dVP~~~~v~G~PAk  261 (294)
T PLN02694        215 IGDGVLIGAGATILGNVKIGEGAKIGAGSVVL------I-DVPPRTTAVGNPAR  261 (294)
T ss_pred             ECCCeEECCeeEECCCCEECCCCEECCCCEEC------C-cCCCCcEEEccCcE
Confidence            56666666665555556666666655555553      2 35555556555544

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.31  E-value=8.8e-12  Score=101.46  Aligned_cols=43  Identities=19%  Similarity=0.295  Sum_probs=34.8

Q ss_pred             eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++||++|+||+++.|                  .++++||++++||++++     |++|+|+++++
T Consensus       114 ~~Ig~~v~Ig~~a~I------------------~~~v~IG~~~~Iga~s~-----V~~dvp~~~~~  156 (162)
T TIGR01172       114 PTVGEGVMIGAGAKV------------------LGNIEVGENAKIGANSV-----VLKDVPPGATV  156 (162)
T ss_pred             CEECCCcEEcCCCEE------------------ECCcEECCCCEECCCCE-----ECCCCCCCCEE
Confidence            567777777777777                  55677889999999999     89999998876

Cysteine biosynthesis

>PRK10191 putative acyl transferase; Provisional

Probab=99.29  E-value=1.6e-11  Score=97.09  Aligned_cols=30  Identities=30%  Similarity=0.324  Sum_probs=13.6

Q ss_pred             eeCCCCEECCCcEECC--CcEECCCCEEcCCc
Q psy9164         222 LVDPTATIGPGCRIGP--NVTIGPGVVIEGGV  251 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~  251 (380)
                      .|++++.+|+++.|++  ++.|++++.||+++
T Consensus        43 ~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~   74 (146)
T PRK10191         43 EIQAAATIGRRFTIHHGYAVVINKNVVAGDDF   74 (146)
T ss_pred             ccCCCCEECCCeEECCCCeEEECCCcEECCCC
Confidence            3444445555544444  34444444444433

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.29  E-value=2.6e-11  Score=86.56  Aligned_cols=75  Identities=31%  Similarity=0.564  Sum_probs=55.9

Q ss_pred             CCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164         243 PGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI  321 (380)
Q Consensus       243 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  321 (380)
                      +++.|++++.|. +++|+++|.|+++++|.++++++++.|++++.+      .++++++++.+++++.+..+.++++++.
T Consensus         4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i------~~sii~~~~~v~~~~~~~~~~~ig~~~~   77 (80)
T cd05824           4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWV------KSSIVGWNSTVGRWTRLENVTVLGDDVT   77 (80)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEE------eCCEEeCCCEECCCcEEecCEEECCceE
Confidence            334444444442 455677888888888889999999999999998      6778888888888887777677777766


Q ss_pred             EC
Q psy9164         322 VQ  323 (380)
Q Consensus       322 ig  323 (380)
                      ||
T Consensus        78 i~   79 (80)
T cd05824          78 IK   79 (80)
T ss_pred             EC
Confidence            54

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02739 serine acetyltransferase

Probab=99.28  E-value=7.9e-12  Score=110.57  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=11.3

Q ss_pred             eeEecCceEEeceeeeccccccCCCCCCCc
Q psy9164         349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQI  378 (380)
Q Consensus       349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~i  378 (380)
                      +++||++++||+|++     |++|+|++++
T Consensus       275 ~V~IGd~aiIGAGSV-----V~kDVP~~st  299 (355)
T PLN02739        275 NISIGAGAMVAAGSL-----VLKDVPSHSM  299 (355)
T ss_pred             CeEECCCCEECCCCE-----ECCCCCCCcE
Confidence            344444444444444     4444444443

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.28  E-value=6.1e-11  Score=88.19  Aligned_cols=84  Identities=25%  Similarity=0.253  Sum_probs=60.2

Q ss_pred             cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceE
Q psy9164         219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI  297 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~  297 (380)
                      +++++++++.+++++.+.+.++||++|.|++++.|. +++||++|.|+.  .+.+++|++++.+++++.|      ++++
T Consensus        10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~l------g~si   81 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFL------GHSY   81 (101)
T ss_pred             CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEE------eeeE
Confidence            467788888888888888788888888888888886 577888888864  5667777777777776666      4555


Q ss_pred             ECccceeCcceEE
Q psy9164         298 IGWKCVVGQWVRM  310 (380)
Q Consensus       298 ig~~~~ig~~~~i  310 (380)
                      ||+++.||+++.+
T Consensus        82 Ig~~v~ig~~~~~   94 (101)
T cd05635          82 LGSWCNLGAGTNN   94 (101)
T ss_pred             ECCCCEECCCcee
Confidence            5555555555443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.27  E-value=2.6e-11  Score=102.32  Aligned_cols=63  Identities=14%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             eEEcCCCEECCceEEee---eeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeec
Q psy9164         273 CIIGWKCVVGQWVRMEN---ITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP  335 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~---~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~  335 (380)
                      ++||++|.||-++.|..   ......++||+||.||+++.+..|+.+|++|.|+++++|++++..-
T Consensus       157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~  222 (271)
T COG2171         157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIY  222 (271)
T ss_pred             EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceE
Confidence            34555555555555533   1112468899999999998888889999999988888888777443

>KOG4750|consensus

Probab=99.27  E-value=1.5e-11  Score=100.05  Aligned_cols=43  Identities=16%  Similarity=0.391  Sum_probs=38.7

Q ss_pred             EECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164         315 VLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       315 ~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      .||+|+|||+++.|                  .++|+||+|++|||||+     |+|||||++..+
T Consensus       202 ~Igd~vliGaGvtI------------------LgnV~IGegavIaAGsv-----V~kDVP~~~~Av  244 (269)
T KOG4750|consen  202 KIGDNVLIGAGVTI------------------LGNVTIGEGAVIAAGSV-----VLKDVPPNTLAV  244 (269)
T ss_pred             cccCCeEEccccEE------------------eCCeeECCCcEEeccce-----EEeccCCCceec
Confidence            68899998888888                  78899999999999999     999999998753

>KOG1462|consensus

Probab=99.27  E-value=1.3e-11  Score=108.66  Aligned_cols=82  Identities=26%  Similarity=0.400  Sum_probs=47.6

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecce
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGEC  296 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~  296 (380)
                      ++..+.++++++|++++.|. .++||.+|.||+++++.+|.+++++.||+++.|++|+||+++.||+++.+      .+|
T Consensus       331 ~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L------~nC  403 (433)
T KOG1462|consen  331 VGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKL------KNC  403 (433)
T ss_pred             cchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCee------eee
Confidence            33445555555555555553 55666666666666666666666666666666666666666666666666      444


Q ss_pred             EECccceeC
Q psy9164         297 IIGWKCVVG  305 (380)
Q Consensus       297 ~ig~~~~ig  305 (380)
                      .||.+-.+.
T Consensus       404 ~Ig~~yvVe  412 (433)
T KOG1462|consen  404 IIGPGYVVE  412 (433)
T ss_pred             EecCCcEEc
Confidence            444444443

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.25  E-value=5.2e-11  Score=89.43  Aligned_cols=80  Identities=15%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECc
Q psy9164         245 VVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQD  324 (380)
Q Consensus       245 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~  324 (380)
                      +.|++++.|.+++||++|.|+ ++.+.++++++++.|++++.|      .++.+++++.||+++.+. +++|++++.||+
T Consensus         2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I------~~siI~~~~~Ig~~~~i~-~siig~~~~Ig~   73 (104)
T cd04651           2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVV------EDSVIMPNVGIGRNAVIR-RAIIDKNVVIPD   73 (104)
T ss_pred             ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEE------EEeEEcCCCEECCCCEEE-eEEECCCCEECC
Confidence            567777778888889999998 888888999999999988888      567788888888888885 578888888888


Q ss_pred             ceEEcCCe
Q psy9164         325 ELYVNGGQ  332 (380)
Q Consensus       325 ~~~i~~~~  332 (380)
                      ++.+.++.
T Consensus        74 ~~~v~~~~   81 (104)
T cd04651          74 GVVIGGDP   81 (104)
T ss_pred             CCEECCCc
Confidence            88886653

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PLN02917 CMP-KDO synthetase

Probab=99.25  E-value=4.7e-10  Score=100.31  Aligned_cols=192  Identities=16%  Similarity=0.149  Sum_probs=126.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+..++..+. +++++..+++.+++.+    .++++....++...||+.+ ..+.+.+....+.+++++||. 
T Consensus        74 LL~~vi~~a~~~~~~~~-VVV~~~~e~I~~~~~~----~~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~P  147 (293)
T PLN02917         74 MIQRTWERAKLATTLDH-IVVATDDERIAECCRG----FGADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEP  147 (293)
T ss_pred             HHHHHHHHHHcCCCCCE-EEEECChHHHHHHHHH----cCCEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcC
Confidence            79999999998876555 3345778888888754    2455544445666787766 577777742245688999998 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEE----EcCCCCceeEEE--ECCCCceeEEEeC------CC---CCCCCeEEEEEE
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVT----QVEEPSKYGVVL--YNEHGCIESFIEK------PQ---EFVSNKINAGMY  143 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~----~~~~~~~~g~v~--~d~~~~v~~~~ek------~~---~~~~~~~~~giy  143 (380)
                       +....++.+++.+++. .+++++..    ..+++.+||.+.  .|++|+++.|..+      ..   +....+.++|+|
T Consensus       148 lI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy  226 (293)
T PLN02917        148 LIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQ  226 (293)
T ss_pred             CCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEE
Confidence             5566689999988654 33433333    456788999885  6778886644422      11   223368899999


Q ss_pred             EeCHhHHhhccC-CCCCcc-cchhhhh--hcCC-cEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         144 IFNPSVLDRIEI-KPTSIE-KEIFPLM--SKEK-QLYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       144 i~~~~~l~~l~~-~~~~~~-~~il~~l--~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                      .|+.+.|..+.. .+.+++ ++.|.++  .+++ ++.....+.....++++.++.++.+.+
T Consensus       227 ~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~  287 (293)
T PLN02917        227 SYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALM  287 (293)
T ss_pred             EeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence            999999886643 222222 2222222  3444 576666655667899999998876654

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.25  E-value=9.4e-11  Score=98.18  Aligned_cols=50  Identities=20%  Similarity=0.296  Sum_probs=27.6

Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      .+.||++++||.++.+.      +++.||++++|++|+++.+. +++++++.|.|++
T Consensus       131 pi~IGd~v~IG~~~~I~------~gv~IG~~~vIgagsvV~kd-vp~~~v~~G~PAk  180 (203)
T PRK09527        131 PITIGNNVWIGSHVVIN------PGVTIGDNSVIGAGSVVTKD-IPPNVVAAGVPCR  180 (203)
T ss_pred             CeEECCCcEECCCCEEc------CCCEECCCCEECCCCEEccc-CCCCcEEEeeCCE
Confidence            35556666666655554      44555555555555555543 5566666666554

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.24  E-value=1.4e-10  Score=97.23  Aligned_cols=125  Identities=21%  Similarity=0.239  Sum_probs=74.9

Q ss_pred             cceeeCCCCEECCCcEE----CCCcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecCeEEcC----CCEECCceEE
Q psy9164         219 GNVLVDPTATIGPGCRI----GPNVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEGCIIGW----KCVVGQWVRM  287 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~ig~----~~~ig~~~~i  287 (380)
                      .+..+++++.++.++++    .+...||++|.|++++.|.   ++.||++|.|++++.|.+...|.    ......+...
T Consensus        42 ~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~  121 (192)
T PRK09677         42 GSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP  121 (192)
T ss_pred             CeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence            45567777777777777    3567889999999998886   68899999888877774321110    0000000000


Q ss_pred             e-eeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         288 E-NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       288 ~-~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      . .....+.+.||++++||.++.+.++++||++++||+++.|      .+ .+++++++.|.|+
T Consensus       122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v------~~-~i~~~~~~~G~Pa  178 (192)
T PRK09677        122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVV------TK-SIPENTVIAGNPA  178 (192)
T ss_pred             hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEE------Cc-ccCCCcEEEecCC
Confidence            0 0011246777888888777776666666666666665555      33 2444444444443

>PRK10502 putative acyl transferase; Provisional

Probab=99.23  E-value=1.1e-10  Score=96.94  Aligned_cols=105  Identities=20%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             CCccccceeeCCCCEECC--CcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee
Q psy9164         214 GDGIVGNVLVDPTATIGP--GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT  291 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~  291 (380)
                      +..+++++.|++++.|..  +..|++++.|+++|.|...   ..+.||++|.|++++.|...   ++..-.+.-.    .
T Consensus        51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~---~~v~IG~~~~I~~~~~I~~~---~h~~~~~~~~----~  120 (182)
T PRK10502         51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNL---GEITIGAHCVISQKSYLCTG---SHDYSDPHFD----L  120 (182)
T ss_pred             ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceeccc---CceEECCCcEECCCeEEECC---CCCCcCCCcc----c
Confidence            356677788888887753  5788888899999988753   34567787777766655210   0000000000    1


Q ss_pred             EecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         292 VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       292 ~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ..+...||++++||.++.+..++.||+++.||+++.+
T Consensus       121 ~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV  157 (182)
T PRK10502        121 NTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSV  157 (182)
T ss_pred             ccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEE
Confidence            1245667777777777666666666666665555554

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.23  E-value=1.3e-10  Score=101.14  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=36.5

Q ss_pred             eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .+||++|+||+++.|                  .++++||++++||+||+     |++|+|+++++
T Consensus       194 p~IGd~V~IGaga~I------------------lggv~IG~~a~IGAgSv-----V~~dVp~~~~v  236 (273)
T PRK11132        194 PKIREGVMIGAGAKI------------------LGNIEVGRGAKIGAGSV-----VLQPVPPHTTA  236 (273)
T ss_pred             CEECCCcEEcCCCEE------------------cCCCEECCCCEECCCCE-----ECcccCCCcEE
Confidence            577888888888877                  56788999999999999     99999998876

>PLN02357 serine acetyltransferase

Probab=99.22  E-value=3.7e-11  Score=107.29  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=45.6

Q ss_pred             CcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee---EecceEECccceeCcceEEc
Q psy9164         238 NVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRME  311 (380)
Q Consensus       238 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~  311 (380)
                      ++.|++++.||.++.|.   .++||+++.||           ++|.|..+++|+...   -..+++||++++||.++.|.
T Consensus       226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIG-----------dnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Il  294 (360)
T PLN02357        226 AVDIHPGAKIGQGILLDHATGVVIGETAVVG-----------NNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCIL  294 (360)
T ss_pred             ceeeCCCCEECCCeEECCCCceEECCCCEEC-----------CCCEEeCCceecCccccCCccCceeCCCeEECCceEEE
Confidence            44555555555555554   34555555444           333333333332210   01235556666666655554


Q ss_pred             cceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         312 NITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       312 ~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      .++.||+++.||++++|      .+ .++++++++|.|++
T Consensus       295 ggV~IGdga~IGAgSVV------~~-dVP~~~~v~G~PAr  327 (360)
T PLN02357        295 GNITIGEGAKIGAGSVV------LK-DVPPRTTAVGNPAR  327 (360)
T ss_pred             CCeEECCCCEECCCCEE------Cc-ccCCCcEEECCCeE
Confidence            44554544444444444      32 24555555555544

>PLN02694 serine O-acetyltransferase

Probab=99.21  E-value=1e-10  Score=101.62  Aligned_cols=28  Identities=29%  Similarity=0.428  Sum_probs=14.4

Q ss_pred             CCcEE--EEeCCcccCCChHHHHHHHHhcC
Q psy9164          69 QEPFF--VLNSDIICDFPFKDLVSFHKNHG   96 (380)
Q Consensus        69 ~~~~l--v~~gD~i~~~~l~~~l~~h~~~~   96 (380)
                      .|+.|  .++.-++...+|.+.|.++...+
T Consensus        42 ~ep~l~~~~~~~il~~~~~~~al~~~l~~~   71 (294)
T PLN02694         42 SEPALASYLYSTILSHSSLERSLSFHLGNK   71 (294)
T ss_pred             cCccHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            45543  12333445555777666665543

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.20  E-value=2.2e-10  Score=98.95  Aligned_cols=61  Identities=26%  Similarity=0.479  Sum_probs=45.6

Q ss_pred             cCeEEcCCCEECCceEEeeeeEecc----eEECccceeCcceEEccceEECCCeEECcceEEcCCeee
Q psy9164         271 EGCIIGWKCVVGQWVRMENITVLGE----CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL  334 (380)
Q Consensus       271 ~~~~ig~~~~ig~~~~i~~~~~~~~----~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~  334 (380)
                      ++|+||+++.|++++.|... ..++    +.||++|+||.++.|  +..||+++.||++++|..++.+
T Consensus       198 HdvvIGd~~~IgpGvsI~G~-LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v  262 (319)
T TIGR03535       198 AGVVVGDGSDIGGGASIMGT-LSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV  262 (319)
T ss_pred             cCCEECCCCEECCCceecce-ecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence            34667777777777775331 2345    899999999999998  6888888888888888777744

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.19  E-value=7.8e-11  Score=93.74  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=13.9

Q ss_pred             ceeEecCceEEeceeeeccccccCCCCCCCc
Q psy9164         348 EDVIVQDELYVNGGQVLPHKSIGSSVPEPQI  378 (380)
Q Consensus       348 ~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~i  378 (380)
                      ++++|+++++||++++     |++|+|++++
T Consensus        90 ~gv~Ig~~~vIgags~-----V~~~v~~~~v  115 (145)
T cd03349          90 PGVTIGDGAVIAAGAV-----VTKDVPPYAI  115 (145)
T ss_pred             CCCEECCCCEECCCCE-----EccccCCCeE
Confidence            3444555555555555     5555555544

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.19  E-value=3.3e-10  Score=93.16  Aligned_cols=102  Identities=15%  Similarity=0.105  Sum_probs=49.8

Q ss_pred             CcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecCeE-EcCCCEECCceEEeeeeEecceEECccceeCcceEEccc
Q psy9164         238 NVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEGCI-IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI  313 (380)
Q Consensus       238 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~-ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~  313 (380)
                      ++.||+++.|+.++.|.   +..||+++.|++++.|.... -.+......+..     ..+.+.||++++||.++.|.++
T Consensus        62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~-----~~~~v~IG~~~~Ig~~a~I~~g  136 (169)
T cd03357          62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLE-----YAKPITIGDNVWIGGGVIILPG  136 (169)
T ss_pred             cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccce-----ecCCcEeCCCEEECCCCEEeCC
Confidence            44444555555554442   45778888887777663210 000000001111     1234555666666666555555


Q ss_pred             eEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +.||++++      |++++++.+ .+++++++.|.|++
T Consensus       137 v~Ig~~~~------VgagavV~~-~vp~~~vv~G~PAk  167 (169)
T cd03357         137 VTIGDNSV------IGAGSVVTK-DIPANVVAAGNPAR  167 (169)
T ss_pred             CEECCCCE------ECCCCEEcc-ccCCCcEEEccccE
Confidence            55555555      544444444 35556566555543

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.19  E-value=1.6e-10  Score=100.29  Aligned_cols=100  Identities=13%  Similarity=0.034  Sum_probs=61.0

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCE-EcCCcE---Ee-ceEEccCCEECCCcEecCeEEcCC----CEEC
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVV-IEGGVC---IK-RSTILRDAIVKSHSWLEGCIIGWK----CVVG  282 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~~~~ig~~----~~ig  282 (380)
                      ..+..|.+.+.|.+++++|++++|.++++|+.++. +|+.+.   |. .++|+++|.||.++.| ...+..+    +.||
T Consensus       176 p~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~~~~V~IG  254 (341)
T TIGR03536       176 PKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGGNIVISVG  254 (341)
T ss_pred             cCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCCceeEEEC
Confidence            44566777777777777777777777777777777 666555   43 6778888888888887 3333444    5555


Q ss_pred             CceEEeeeeEecceEECccceeCcceEEccc
Q psy9164         283 QWVRMENITVLGECIIGWKCVVGQWVRMENI  313 (380)
Q Consensus       283 ~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~  313 (380)
                      ++|.|+.+... +..||++|.||.++.+..+
T Consensus       255 e~~lIGagA~I-GI~IGd~~iIGAGavVtag  284 (341)
T TIGR03536       255 EGCLLGANAGI-GIPLGDRCTVEAGLYITAG  284 (341)
T ss_pred             CCcEECCCCEE-eeEECCCCEECCCCEEeCC
Confidence            55555433222 4444444444444444333

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.7e-10  Score=106.13  Aligned_cols=86  Identities=27%  Similarity=0.395  Sum_probs=71.1

Q ss_pred             cEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEc
Q psy9164         233 CRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRME  311 (380)
Q Consensus       233 ~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~  311 (380)
                      +.|.++++|+++|.|++++.|+ .++||++|.|++++.|.+|+|+++|.|++++.+      .+++||++|.||+..   
T Consensus       256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i------~~sIi~~~~~ig~~~---  326 (358)
T COG1208         256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYI------GDSIIGENCKIGASL---  326 (358)
T ss_pred             ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEE------eeeEEcCCcEECCce---
Confidence            6677788888888888888887 588899999999999999999999999999999      788889999998821   


Q ss_pred             cceEECCCeEECcceEEcCC
Q psy9164         312 NITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       312 ~~~~ig~~~~ig~~~~i~~~  331 (380)
                         .+++ +.+|.++.+.+|
T Consensus       327 ---~i~d-~~~g~~~~i~~g  342 (358)
T COG1208         327 ---IIGD-VVIGINSEILPG  342 (358)
T ss_pred             ---eecc-eEecCceEEcCc
Confidence               1677 776666666433

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.17  E-value=2e-10  Score=93.50  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=23.7

Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      .++||++++||.++.+..+++||++++||+++.|.
T Consensus       113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~  147 (162)
T TIGR01172       113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL  147 (162)
T ss_pred             CCEECCCcEEcCCCEEECCcEECCCCEECCCCEEC
Confidence            35667777777776666667777777766666663

Cysteine biosynthesis

>PRK10191 putative acyl transferase; Provisional

Probab=99.16  E-value=3e-10  Score=89.90  Aligned_cols=32  Identities=25%  Similarity=0.209  Sum_probs=18.0

Q ss_pred             EECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      .||++++||.++.+..++.||++++||+++.+
T Consensus        94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V  125 (146)
T PRK10191         94 HIGNGVELGANVIILGDITIGNNVTVGAGSVV  125 (146)
T ss_pred             EECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence            44555555555555555666666665555555

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.16  E-value=2.3e-10  Score=107.26  Aligned_cols=87  Identities=20%  Similarity=0.279  Sum_probs=69.1

Q ss_pred             CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEEC
Q psy9164         238 NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLG  317 (380)
Q Consensus       238 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig  317 (380)
                      ++.+...+.|++++.|.++.|+++|.|+.  .+.+|+||++|.|+++|.|      .+++|++++.|++++.+.+ ++|+
T Consensus       276 ~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i------~~svi~~~~~i~~~~~i~~-~ii~  346 (380)
T PRK05293        276 VNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVV------KDSVIMPGAKIGENVVIER-AIIG  346 (380)
T ss_pred             CCcCCCCCEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEE------ECCEEeCCCEECCCeEEeE-EEEC
Confidence            33444455666666666788899999963  5678999999999999999      6888999999999998866 8889


Q ss_pred             CCeEECcceEEcCCee
Q psy9164         318 EDVIVQDELYVNGGQV  333 (380)
Q Consensus       318 ~~~~ig~~~~i~~~~v  333 (380)
                      +++.||+++.+.++..
T Consensus       347 ~~~~i~~~~~i~~~~~  362 (380)
T PRK05293        347 ENAVIGDGVIIGGGKE  362 (380)
T ss_pred             CCCEECCCCEEcCCCc
Confidence            9999999888876543

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.16  E-value=4.3e-10  Score=85.60  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=17.7

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      .++.||++++|+.++.+..++.|++++++++++.+
T Consensus        57 ~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v   91 (109)
T cd04647          57 APIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVV   91 (109)
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            44444555555555554444555555554444444

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.14  E-value=2.9e-10  Score=85.14  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=15.2

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      +.++||++++|+.++.+..++.|+++++|++++.|
T Consensus        53 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i   87 (101)
T cd03354          53 RHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVV   87 (101)
T ss_pred             CCCEECCCcEEcCCCEEECcCEECCCCEECCCCEE
Confidence            34444444444444444444444444443333333

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.12  E-value=9.7e-10  Score=83.09  Aligned_cols=51  Identities=16%  Similarity=0.123  Sum_probs=29.7

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +.+.||++++||.++.+..++.||+++.|++++.+      .+ .+.++.++.|.|++
T Consensus        55 ~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v------~~-~~~~~~~~~G~Pa~  105 (107)
T cd05825          55 APIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVV------VR-DLPAWTVYAGNPAV  105 (107)
T ss_pred             CCEEECCCCEECCCCEECCCCEECCCCEECCCCEE------eC-cCCCCCEEECCccE
Confidence            45666777777777666655555555555555555      33 24555556555544

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.12  E-value=3.2e-10  Score=95.84  Aligned_cols=32  Identities=16%  Similarity=0.365  Sum_probs=16.2

Q ss_pred             eEEccCCEECCCcEe---------cCeEEcCCCEECCceEE
Q psy9164         256 STILRDAIVKSHSWL---------EGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       256 ~~i~~~~~i~~~~~i---------~~~~ig~~~~ig~~~~i  287 (380)
                      .+||+||.||.++.|         ..++|++||.||.++.+
T Consensus       157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~  197 (271)
T COG2171         157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEV  197 (271)
T ss_pred             EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccce
Confidence            345555555555544         13555555555555433

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.11  E-value=4.4e-10  Score=106.86  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=56.1

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccC-------------------CEECCCcEecCeE
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRD-------------------AIVKSHSWLEGCI  274 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~  274 (380)
                      +..+.+ ++|+++++|+ ++.|+ +++|+++|.|+++|.|.+++++..                   +.|+++|.+.+++
T Consensus       310 ~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~v  386 (436)
T PLN02241        310 DCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAI  386 (436)
T ss_pred             CCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceE
Confidence            445554 8899999999 99995 789999999999999998887552                   2677777777777


Q ss_pred             EcCCCEECCceEE
Q psy9164         275 IGWKCVVGQWVRM  287 (380)
Q Consensus       275 ig~~~~ig~~~~i  287 (380)
                      |++++.||+++.+
T Consensus       387 I~~~v~Ig~~~~i  399 (436)
T PLN02241        387 IDKNARIGKNVVI  399 (436)
T ss_pred             ecCCCEECCCcEE
Confidence            7777777777766

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.11  E-value=5.4e-10  Score=96.52  Aligned_cols=57  Identities=16%  Similarity=0.163  Sum_probs=26.4

Q ss_pred             CCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCC-EECCCcEecCeEEcCCCEECCceEEee
Q psy9164         226 TATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDA-IVKSHSWLEGCIIGWKCVVGQWVRMEN  289 (380)
Q Consensus       226 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~-~i~~~~~i~~~~ig~~~~ig~~~~i~~  289 (380)
                      +++|.+..++.-+++||+++.|.+.++|.     -++ +||+. .| ++.|+++|.||++|.|++
T Consensus       153 gVRI~~~~rVRlGAyLGeGtvVm~~a~VN-----~nAgtIG~~-iI-~g~I~HdvvIGd~~~Igp  210 (319)
T TIGR03535       153 GVRIGDADRVRLGAHLAEGTTVMHEGFVN-----FNAGTLGAS-MV-EGRISAGVVVGDGSDIGG  210 (319)
T ss_pred             ccEECCCceeeeccEECCCCEEcCCCEEc-----cCceEecCc-eE-EEEEccCCEECCCCEECC
Confidence            44444444444444444444444444442     222 23331 22 356666666666666643

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PLN02357 serine acetyltransferase

Probab=99.09  E-value=1e-09  Score=98.20  Aligned_cols=85  Identities=26%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             ceeeCCCCEECCCcEECC--CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecce
Q psy9164         220 NVLVDPTATIGPGCRIGP--NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGEC  296 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~  296 (380)
                      .+.|++++.||+++.|.+  +++||++|+||++|.|. +++||..   +......+++||++|.||.++.|     .+++
T Consensus       226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~I-----lggV  297 (360)
T PLN02357        226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCI-----LGNI  297 (360)
T ss_pred             ceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEE-----ECCe
Confidence            456777777877777764  56777777777777764 3444432   11111245889999999999888     5788


Q ss_pred             EECccceeCcceEEcc
Q psy9164         297 IIGWKCVVGQWVRMEN  312 (380)
Q Consensus       297 ~ig~~~~ig~~~~i~~  312 (380)
                      .||+++.||+++.+..
T Consensus       298 ~IGdga~IGAgSVV~~  313 (360)
T PLN02357        298 TIGEGAKIGAGSVVLK  313 (360)
T ss_pred             EECCCCEECCCCEECc
Confidence            8888888888877765

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.07  E-value=7.4e-10  Score=84.26  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=15.8

Q ss_pred             ECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164         298 IGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~  332 (380)
                      ...++.||+++.++.++.+.+++.||+++.+++++
T Consensus        55 ~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~   89 (109)
T cd04647          55 TSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGS   89 (109)
T ss_pred             ccCCeEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence            34444444444444444444444444444444433

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PLN02739 serine acetyltransferase

Probab=99.06  E-value=7.2e-10  Score=98.28  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=27.9

Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV  352 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i  352 (380)
                      +.||++++||.++.|..++.||+++.||++++|      .+ .+++++++.|.|.++
T Consensus       258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV------~k-DVP~~stvvG~PAri  307 (355)
T PLN02739        258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLV------LK-DVPSHSMVAGNPAKL  307 (355)
T ss_pred             cEECCCCEEcCCCEEeCCeEECCCCEECCCCEE------CC-CCCCCcEEEecCCEE
Confidence            445556666666555555555555554444444      43 366676777766653

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.05  E-value=2.1e-09  Score=80.49  Aligned_cols=17  Identities=24%  Similarity=0.309  Sum_probs=9.0

Q ss_pred             cCeEEcCCCEECCceEE
Q psy9164         271 EGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       271 ~~~~ig~~~~ig~~~~i  287 (380)
                      ..++|++++.|+.++.+
T Consensus        53 ~~~~Ig~~~~Ig~~~~i   69 (101)
T cd03354          53 RHPTIGDNVVIGAGAKI   69 (101)
T ss_pred             CCCEECCCcEEcCCCEE
Confidence            44555555555555555

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.04  E-value=7.6e-10  Score=89.38  Aligned_cols=104  Identities=20%  Similarity=0.235  Sum_probs=54.3

Q ss_pred             ccccceeeCCCCEECCCcEECC--CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGP--NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL  293 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~  293 (380)
                      .+.-...|+|.++||++..|..  +++||+.+.||++|.|.     .++++|....=..                    .
T Consensus        63 ~~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~-----~gVTLGgtg~~~g--------------------~  117 (194)
T COG1045          63 RFLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIY-----HGVTLGGTGKESG--------------------K  117 (194)
T ss_pred             HhhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEE-----cceEecCCCCcCC--------------------C
Confidence            3345667777777777777753  34566666665555542     2222221100000                    1


Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      .+-.||+++.||++++|-.+..||++++||+|++|.       +.++++++++|-|.+
T Consensus       118 RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVl-------kdVP~~~tvvGvPAr  168 (194)
T COG1045         118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVL-------KDVPPNATVVGVPAR  168 (194)
T ss_pred             CCCccCCCeEECCCCEEEcceEECCCCEECCCceEc-------cCCCCCceEecCcce
Confidence            233445555555555555556667777766666663       234555555554443

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.03  E-value=2.3e-09  Score=79.74  Aligned_cols=75  Identities=27%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164         213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN  289 (380)
Q Consensus       213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~  289 (380)
                      ++..+.++++|++++.|++++.|+++++||++|.|+.  .+.++++++++.++++++|.+++||+++.||+++...+
T Consensus        22 ~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~   96 (101)
T cd05635          22 PFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD   96 (101)
T ss_pred             CCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence            3444555556666666666666666666666666643  45688888888888888888888888888888877643

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.00  E-value=3.2e-09  Score=87.89  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             cceeeCCCC--EECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecc
Q psy9164         219 GNVLVDPTA--TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGE  295 (380)
Q Consensus       219 ~~~~i~~~~--~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~  295 (380)
                      ++++|.|+.  .+|.++.||+++.|+.+|.|++.+.|   .||++|.|++++.+.. ....+......+..+     .+.
T Consensus        58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~-----~~~  129 (183)
T PRK10092         58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAEL-----GKP  129 (183)
T ss_pred             CCEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHcccccee-----cCC
Confidence            356666655  34666666666666666666665543   6888888887776632 111111111111111     234


Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +.||++++||.++.+.      +++.||++++|++++++.+. +++++++.|.|++
T Consensus       130 v~IGd~v~IG~~a~I~------~gv~IG~~~vIgagsvV~~d-i~~~~i~~G~PAr  178 (183)
T PRK10092        130 VTIGNNVWIGGRAVIN------PGVTIGDNVVVASGAVVTKD-VPDNVVVGGNPAR  178 (183)
T ss_pred             eEECCCcEECCCCEEC------CCCEECCCCEECCCCEEccc-cCCCcEEEecCcE
Confidence            5556666666665554      45555555555555555543 5566666666554

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.00  E-value=1.6e-09  Score=102.72  Aligned_cols=79  Identities=10%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             CcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEE-C------------------ccceeCcceEE
Q psy9164         250 GVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII-G------------------WKCVVGQWVRM  310 (380)
Q Consensus       250 ~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~i-g------------------~~~~ig~~~~i  310 (380)
                      ++.+.++.|+++|.| +++.|.+|+||++|.||++|.|.      ++++ |                  .++.||++|.|
T Consensus       303 ~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~------~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i  375 (429)
T PRK02862        303 DATITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIE------DTLVMGADFYESSEEREELRKEGKPPLGIGEGTTI  375 (429)
T ss_pred             ccEEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEE------eeEEecCcccccccccccccccCCcccEECCCCEE
Confidence            567778899999999 88999999999999999999994      4444 3                  27888888888


Q ss_pred             ccceEECCCeEECcceEEcCCeeecc
Q psy9164         311 ENITVLGEDVIVQDELYVNGGQVLPH  336 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~i~~~~v~~~  336 (380)
                      .. ++|++++.||+++.+.++..++.
T Consensus       376 ~~-~ii~~~~~i~~~~~~~~~~~~~~  400 (429)
T PRK02862        376 KR-AIIDKNARIGNNVRIVNKDNVEE  400 (429)
T ss_pred             EE-EEECCCcEECCCcEEecCCCccc
Confidence            65 78899999999999976554333

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.98  E-value=2.8e-09  Score=75.59  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=15.9

Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ..||++++++.++.+..++.|++++.|++++.|
T Consensus        45 ~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v   77 (78)
T cd00208          45 TIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV   77 (78)
T ss_pred             cEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence            444444444444444444555555554444443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.95  E-value=5.1e-09  Score=97.11  Aligned_cols=90  Identities=21%  Similarity=0.267  Sum_probs=56.7

Q ss_pred             CCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcce-E
Q psy9164         231 PGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWV-R  309 (380)
Q Consensus       231 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~-~  309 (380)
                      +++.+.+.+.|+++|.|      .+++|...+.||++|.|.+++|++++.||++|.|++ +...+++|++++.|+.+. .
T Consensus       247 ~~~~i~~~~~i~~~~~i------~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~-~~i~~s~i~~~~~i~~~~~~  319 (353)
T TIGR01208       247 DESKIRGRVVVGEGAKI------VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRD-AEVEHSIVLDESVIEGVQAR  319 (353)
T ss_pred             CCCEEcCCEEECCCCEE------eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEee-eEEEeeEEcCCCEEcCCcce
Confidence            34444445555555555      444445556666666666778888888888888863 444677777777777663 4


Q ss_pred             EccceEECCCeEECcceEE
Q psy9164         310 MENITVLGEDVIVQDELYV  328 (380)
Q Consensus       310 i~~~~~ig~~~~ig~~~~i  328 (380)
                      +. ++++++++.|++++.+
T Consensus       320 ~~-~~ii~~~~~i~~~~~~  337 (353)
T TIGR01208       320 IV-DSVIGKKVRIKGNRRR  337 (353)
T ss_pred             ee-cCEEcCCCEECCCccc
Confidence            43 4666666666666555

Alternate name: dTDP-D-glucose synthase

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.91  E-value=1e-08  Score=72.64  Aligned_cols=74  Identities=27%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECcc
Q psy9164         222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWK  301 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~  301 (380)
                      .|++++.|++++.|++++.||++|.|++++.+.+.....        ....+.|++++.+++++.+     ..++.+|++
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i-----~~~~~ig~~   68 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVI-----HGGVKIGDN   68 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEE-----eCCCEECCC
Confidence            456666666666666666666666666666665332111        1123555566666655555     223444444


Q ss_pred             ceeCcce
Q psy9164         302 CVVGQWV  308 (380)
Q Consensus       302 ~~ig~~~  308 (380)
                      +.+++++
T Consensus        69 ~~i~~~s   75 (78)
T cd00208          69 AVIGAGA   75 (78)
T ss_pred             CEECcCc
Confidence            4444443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.90  E-value=3.2e-08  Score=93.75  Aligned_cols=191  Identities=20%  Similarity=0.233  Sum_probs=126.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC----CCcEEEE
Q psy9164           1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS----QEPFFVL   75 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~----~~~~lv~   75 (380)
                      ||+++++.+...++.+.+++++. +.+.+++.+.+...   ..-.++.++...+|+.++..|..++...    +.-++++
T Consensus        40 llq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vl  116 (478)
T PRK15460         40 MLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVL  116 (478)
T ss_pred             HHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEe
Confidence            68999999999999888888876 45677777654210   1124677899999999988777666321    2347889


Q ss_pred             eCCcccCCC--hHHHHHHH---HhcCCcEEEEEEEcCCCCceeEEEECCC---------CceeEEEeCCCCC--------
Q psy9164          76 NSDIICDFP--FKDLVSFH---KNHGKEGTIVVTQVEEPSKYGVVLYNEH---------GCIESFIEKPQEF--------  133 (380)
Q Consensus        76 ~gD~i~~~~--l~~~l~~h---~~~~~~~tl~~~~~~~~~~~g~v~~d~~---------~~v~~~~ek~~~~--------  133 (380)
                      ++|++....  |.+.++..   .+.+.-+|+...+..+..+||++..++.         .+|..|.|||...        
T Consensus       117 PaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~  196 (478)
T PRK15460        117 AADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVAS  196 (478)
T ss_pred             ccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHc
Confidence            999965432  44444422   2236677777778788899999998742         2699999999732        


Q ss_pred             CCCeEEEEEEEeCHhHH-hhccC-----------------CCCC---cccchhhh----------hhcCCcEEEEEeccE
Q psy9164         134 VSNKINAGMYIFNPSVL-DRIEI-----------------KPTS---IEKEIFPL----------MSKEKQLYAMELKGF  182 (380)
Q Consensus       134 ~~~~~~~giyi~~~~~l-~~l~~-----------------~~~~---~~~~il~~----------l~~~~~i~~~~~~~~  182 (380)
                      ...+.|+|||+|+.+.+ +.++.                 ....   +..+.++.          |-+..++...+.+--
T Consensus       197 G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~  276 (478)
T PRK15460        197 GEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAG  276 (478)
T ss_pred             CCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCC
Confidence            22478999999998765 33321                 0001   11222222          223345777777777


Q ss_pred             EEecCChhhHHH
Q psy9164         183 WMDVGQPRDFLK  194 (380)
Q Consensus       183 ~~~i~~~~~~~~  194 (380)
                      |.|+|++.++.+
T Consensus       277 WsDvGsW~sl~~  288 (478)
T PRK15460        277 WSDVGSWSSLWE  288 (478)
T ss_pred             ccccCCHHHHHH
Confidence            999999887654

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=98.86  E-value=6.5e-08  Score=84.35  Aligned_cols=192  Identities=20%  Similarity=0.229  Sum_probs=126.4

Q ss_pred             CHHHHHHHHHH-cCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC-C-CcEEEEe
Q psy9164           1 MLLHQIEALVE-AGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS-Q-EPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~-~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~-~-~~~lv~~   76 (380)
                      |++.+++.+.. .+.++++++++. +...+++.+.+...  +..-.+..++....|+.++..+.-.+... . .-++|++
T Consensus        36 llq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~--~~~~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlp  113 (333)
T COG0836          36 LLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI--ENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLP  113 (333)
T ss_pred             HHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh--ccccceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Confidence            67888999988 678999999986 44666666654111  11111567889999999998776655322 2 2378999


Q ss_pred             CCcccCCC--hHHHHHHH---HhcCCcEEEEEEEcCCCCceeEEEECCC------CceeEEEeCCCCC--------CCCe
Q psy9164          77 SDIICDFP--FKDLVSFH---KNHGKEGTIVVTQVEEPSKYGVVLYNEH------GCIESFIEKPQEF--------VSNK  137 (380)
Q Consensus        77 gD~i~~~~--l~~~l~~h---~~~~~~~tl~~~~~~~~~~~g~v~~d~~------~~v~~~~ek~~~~--------~~~~  137 (380)
                      +|++..-.  |.+.++..   .+++.-+|+...+..+..+||++...+.      -+|.+|+|||...        ...+
T Consensus       114 sDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~  193 (333)
T COG0836         114 SDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYL  193 (333)
T ss_pred             CcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceE
Confidence            99955432  55555433   3455667777777778899999998532      3689999999732        2357


Q ss_pred             EEEEEEEeCHhHH-hhccC--------------CCCCcc-----cch----------hhhhhcCCcEEEEEeccEEEecC
Q psy9164         138 INAGMYIFNPSVL-DRIEI--------------KPTSIE-----KEI----------FPLMSKEKQLYAMELKGFWMDVG  187 (380)
Q Consensus       138 ~~~giyi~~~~~l-~~l~~--------------~~~~~~-----~~i----------l~~l~~~~~i~~~~~~~~~~~i~  187 (380)
                      .|+|+++|+...+ +.++.              ...+..     .+.          +..|-+..++...+.+-.|-|+|
T Consensus       194 WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlG  273 (333)
T COG0836         194 WNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLG  273 (333)
T ss_pred             eeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCccccc
Confidence            8999999998765 33321              000000     111          12234556788888888899999


Q ss_pred             ChhhHHH
Q psy9164         188 QPRDFLK  194 (380)
Q Consensus       188 ~~~~~~~  194 (380)
                      ++...++
T Consensus       274 sW~Al~~  280 (333)
T COG0836         274 SWHALWE  280 (333)
T ss_pred             CHHHHHH
Confidence            9877653

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.86  E-value=9.5e-09  Score=96.98  Aligned_cols=71  Identities=20%  Similarity=0.310  Sum_probs=64.9

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN  289 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~  289 (380)
                      +.++++|++++.|+ +++|. +++||++|.|+++|.|.+|+|+++|.|+++|.|.+|++++++.|++++.+..
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            44678899999998 88886 7999999999999999999999999999999999999999999999999844

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.85  E-value=2.7e-08  Score=79.18  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             ecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ..++.||++|+||.++.+..++.||+++.||+++.|
T Consensus        71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V  106 (145)
T cd03349          71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVV  106 (145)
T ss_pred             cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence            356777777777777776666666666666666555

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>KOG3121|consensus

Probab=98.82  E-value=9.1e-09  Score=77.70  Aligned_cols=47  Identities=11%  Similarity=0.127  Sum_probs=20.4

Q ss_pred             CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECC
Q psy9164         272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE  318 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~  318 (380)
                      +..||+++.|++.|.+........+.+|.++.||++|.+++-+.|.+
T Consensus        84 p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild  130 (184)
T KOG3121|consen   84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILD  130 (184)
T ss_pred             eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccC
Confidence            34555555555555553332223333333333344433333333333

>KOG4042|consensus

Probab=98.78  E-value=1.9e-08  Score=76.61  Aligned_cols=103  Identities=18%  Similarity=0.146  Sum_probs=64.2

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecC--------------eEEcCCCEE
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEG--------------CIIGWKCVV  281 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~ig~~~~i  281 (380)
                      ++.|.|++.+...+.|...++|+++|++.+.+++.    ..+||+++.|.+.+.|.+              -+||.+...
T Consensus         8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF   87 (190)
T KOG4042|consen    8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF   87 (190)
T ss_pred             eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence            46677788887777788888888888888888774    778888888888777632              456666655


Q ss_pred             CCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      .-+|..      ....+|++-.|+..+.+++++.+-++|.||+.+.+
T Consensus        88 eVgc~s------~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v  128 (190)
T KOG4042|consen   88 EVGCKS------SAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTV  128 (190)
T ss_pred             Eeechh------hhhhhcCcceEeeeeEecCCcEEcCCceeccceEE
Confidence            555555      33334444444444333333444444444444444

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.77  E-value=4.1e-08  Score=91.43  Aligned_cols=80  Identities=16%  Similarity=0.346  Sum_probs=55.6

Q ss_pred             CCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164         242 GPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI  321 (380)
Q Consensus       242 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  321 (380)
                      -+.+.|++.+.+.+++||++|.|+.+ .+.+++|+++|.|+++|.|.++.+..++.+|.++.+ .++.+++++.|+.++.
T Consensus       281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~  358 (361)
T TIGR02091       281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVV  358 (361)
T ss_pred             CCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCE
Confidence            34445555555566777777777765 677778888888888888866666666666666666 4666777777777777


Q ss_pred             EC
Q psy9164         322 VQ  323 (380)
Q Consensus       322 ig  323 (380)
                      ||
T Consensus       359 i~  360 (361)
T TIGR02091       359 IG  360 (361)
T ss_pred             eC
Confidence            76

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.74  E-value=1.3e-07  Score=79.66  Aligned_cols=50  Identities=18%  Similarity=0.280  Sum_probs=28.2

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      +.++||+++|||.++.|.+++.||++++      |++++++.++ ++.++++.|.|+
T Consensus       123 ~~v~IG~~vwIG~~a~IlpGV~IG~gav------igagsVVtkd-vp~~~iv~G~Pa  172 (190)
T COG0110         123 GPVTIGEDVWIGAGAVILPGVTIGEGAV------IGAGSVVTKD-VPPYGIVAGNPA  172 (190)
T ss_pred             CCeEECCCeEEcCccEECCCEEECCCcE------EeeCCEEeCc-cCCCeEEeCCcc
Confidence            4577777777777766666555555555      5555544443 344444444443

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.74  E-value=6.4e-08  Score=91.78  Aligned_cols=73  Identities=14%  Similarity=0.251  Sum_probs=41.4

Q ss_pred             EeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceE
Q psy9164         253 IKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELY  327 (380)
Q Consensus       253 i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~  327 (380)
                      +.+++|+++|.| +++.|.+|+|+++|.|+++|.|.++.+..++.||+++.| .++.++.++.|+++++||+++.
T Consensus       325 ~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~~~~  397 (425)
T PRK00725        325 AINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGEDPE  397 (425)
T ss_pred             EEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECCCCC
Confidence            345666666666 456666666666666666666654444445555555554 2344555555666666665544

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.73  E-value=5e-08  Score=91.09  Aligned_cols=80  Identities=21%  Similarity=0.405  Sum_probs=66.0

Q ss_pred             CCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEE
Q psy9164         243 PGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIV  322 (380)
Q Consensus       243 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i  322 (380)
                      +.+.|++++.|.+|+||++|.|+  +.+.+|+|+++|.|+++|.|      .++++++++.|++++.+.+ ++|++++.|
T Consensus       277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i------~~sii~~~~~I~~~~~i~~-~ii~~~~~v  347 (369)
T TIGR02092       277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALI------KNCIIMQRTVIGEGAHLEN-VIIDKDVVI  347 (369)
T ss_pred             CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEE------EeeEEeCCCEECCCCEEEE-EEECCCCEE
Confidence            55666666777888999999997  46889999999999999999      7788888888888888866 888888888


Q ss_pred             CcceEEcCC
Q psy9164         323 QDELYVNGG  331 (380)
Q Consensus       323 g~~~~i~~~  331 (380)
                      |+++.+.++
T Consensus       348 ~~~~~~~~~  356 (369)
T TIGR02092       348 EPNVKIAGT  356 (369)
T ss_pred             CCCCEeCCC
Confidence            888877543

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=6.7e-08  Score=86.99  Aligned_cols=83  Identities=11%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             ECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCe
Q psy9164         241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV  320 (380)
Q Consensus       241 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~  320 (380)
                      .-+-+.+.+++.+.+|.++++|.|..  .+.+|+|+.++.|+.+|.|      .+|+|=.++.||++|.+.. ++|.++|
T Consensus       282 ~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i------~~svim~~~~IG~~~~l~~-aIIDk~v  352 (393)
T COG0448         282 NLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVI------ENSVIMPDVEIGEGAVLRR-AIIDKNV  352 (393)
T ss_pred             CCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEE------EeeEEeCCcEECCCCEEEE-EEeCCCc
Confidence            33445555566678888999999875  8889999999999999999      6677777788888888876 8889999


Q ss_pred             EECcceEEcCCe
Q psy9164         321 IVQDELYVNGGQ  332 (380)
Q Consensus       321 ~ig~~~~i~~~~  332 (380)
                      .|++|+.|+...
T Consensus       353 ~I~~g~~i~~~~  364 (393)
T COG0448         353 VIGEGVVIGGDK  364 (393)
T ss_pred             EeCCCcEEcCCc
Confidence            999999998764

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=98.73  E-value=4.4e-07  Score=72.78  Aligned_cols=136  Identities=24%  Similarity=0.367  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|+.+|+||+||..+++ +||.+   ..++++.+.+....-.+..++.+|++++.    +.-|+.+|.+
T Consensus        33 lIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvyN~kY~~yNn~ySlyla~d~l~----ntYiidsDny  104 (231)
T COG4750          33 LIERQIEQLREAGIDDITIVVGYLKEQF-EYLKD---KYDVTLVYNPKYREYNNIYSLYLARDFLN----NTYIIDSDNY  104 (231)
T ss_pred             cHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHH---hcCeEEEeCchHHhhhhHHHHHHHHHHhc----ccEEeccchH
Confidence            7999999999999999999999999987 56655   34899999999888899999999999993    3446688875


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhc
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l  153 (380)
                      ...+   ++..+..+   ..-.....+....--.+..+.+++++.+.-..   ...++.+|+..|+....+.+
T Consensus       105 l~kN---if~~~~~~---S~Yfav~~~~~tnEw~l~~~~~~ki~~v~Igg---~~~~imsG~sff~~~~~~ki  168 (231)
T COG4750         105 LTKN---IFLTKESH---SKYFAVYRSGKTNEWLLIYNSDGKITRVDIGG---LNGYIMSGISFFDAQFSNKI  168 (231)
T ss_pred             hhhh---hhhcCccc---ceEEEEEecCCCceeEEEEcCCCcEEEEEecC---cccceEeeeeeecchhHHHH
Confidence            5422   22222222   22222222332232356778899998876532   34678899999998766544

>KOG3121|consensus

Probab=98.72  E-value=4.9e-08  Score=73.83  Aligned_cols=62  Identities=19%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             eEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         256 STILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       256 ~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ..||+++.|+++|.+.-+.||..+.+|.++.|           |.+|.+.+.|.|.+++++.+...+.+.+.+
T Consensus        85 ~hiGdhVFieE~cVVnAAqIgsyVh~Gknavi-----------GrrCVlkdCc~ild~tVlPpet~vppy~~~  146 (184)
T KOG3121|consen   85 VHIGDHVFIEEECVVNAAQIGSYVHLGKNAVI-----------GRRCVLKDCCRILDDTVLPPETLVPPYSTI  146 (184)
T ss_pred             eeecceEEEecceEeehhhheeeeEeccceeE-----------cCceEhhhheeccCCcccCcccccCCceEE
Confidence            34666666666666655666666555555555           444444444555555555555554444444

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=98.63  E-value=3.7e-06  Score=73.27  Aligned_cols=185  Identities=16%  Similarity=0.213  Sum_probs=112.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC-CCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN-KSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~-~~~~~~lv~~gD~   79 (380)
                      ||+|+++.+..+++++|+|++.  .+.+.+++.+    ++.++....+....|+. ++..+...+. ...+-++++.||.
T Consensus        26 li~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~----~g~~~v~~~~~~~~Gt~-r~~~~~~~l~~~~~d~Vli~~gD~   98 (238)
T TIGR00466        26 MIVHVAENANESGADRCIVATD--DESVAQTCQK----FGIEVCMTSKHHNSGTE-RLAEVVEKLALKDDERIVNLQGDE   98 (238)
T ss_pred             HHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH----cCCEEEEeCCCCCChhH-HHHHHHHHhCCCCCCEEEEEcCCc
Confidence            6899999999999999999875  3556666644    34554333333444543 3443433331 1134478889998


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCc-----eeEEEECCCCceeEEEeCCC----C-------CC--CCeEE
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSK-----YGVVLYNEHGCIESFIEKPQ----E-------FV--SNKIN  139 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~-----~g~v~~d~~~~v~~~~ek~~----~-------~~--~~~~~  139 (380)
                        +....+.++++.+++...+++.+..+..++..     ...+..|.+|+.+.|...+.    +       +.  ..+..
T Consensus        99 Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h  178 (238)
T TIGR00466        99 PFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRH  178 (238)
T ss_pred             CcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccccccccceeEE
Confidence              55556899999886655666766666554221     23344467777766665421    1       01  13568


Q ss_pred             EEEEEeCHhHHhhccCCC-CCccc----chhhhhhcCCcEEEEEeccE-EEecCChhhH
Q psy9164         140 AGMYIFNPSVLDRIEIKP-TSIEK----EIFPLMSKEKQLYAMELKGF-WMDVGQPRDF  192 (380)
Q Consensus       140 ~giyi~~~~~l~~l~~~~-~~~~~----~il~~l~~~~~i~~~~~~~~-~~~i~~~~~~  192 (380)
                      .|+|.|++++|+.+..-+ ..++.    |-+..|-...++.....+.. ...++||+|+
T Consensus       179 ~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~  237 (238)
T TIGR00466       179 IGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL  237 (238)
T ss_pred             EEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence            999999999998874322 22221    23444444446776666544 3588888874

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.59  E-value=6.5e-07  Score=73.76  Aligned_cols=86  Identities=16%  Similarity=0.323  Sum_probs=54.5

Q ss_pred             CCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164         242 GPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI  321 (380)
Q Consensus       242 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  321 (380)
                      -.++.||+++.++-.++++...+|+++.|...+++.++.|+.+|.+     .+++..+.+++||+++.|+...++..+-.
T Consensus        20 ~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv-----~gNV~ve~dayiGE~~sI~gkl~v~gdLd   94 (277)
T COG4801          20 KGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKV-----TGNVIVENDAYIGEFSSIKGKLTVIGDLD   94 (277)
T ss_pred             eccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEe-----eccEEEcCceEEeccceeeeeEEEecccc
Confidence            3344444555555455666666666666666666677777777766     45666677777777777766666666666


Q ss_pred             ECcceEEcCCe
Q psy9164         322 VQDELYVNGGQ  332 (380)
Q Consensus       322 ig~~~~i~~~~  332 (380)
                      +|+++.|-+|.
T Consensus        95 ig~dV~Ieggf  105 (277)
T COG4801          95 IGADVIIEGGF  105 (277)
T ss_pred             cccceEEecCe
Confidence            66666666554

>KOG4750|consensus

Probab=98.57  E-value=1.7e-07  Score=76.82  Aligned_cols=71  Identities=14%  Similarity=0.166  Sum_probs=37.9

Q ss_pred             EEcCCCEECCceEEeeee---EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         274 IIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      ++|+++.|..+++++..-   -.++-.||+|++||.++.|.      .++.||+|+.|++|+++-.+ ++.+.+.+|+|+
T Consensus       176 vvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtIL------gnV~IGegavIaAGsvV~kD-VP~~~~AvGnPA  248 (269)
T KOG4750|consen  176 VVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTIL------GNVTIGEGAVIAAGSVVLKD-VPPNTLAVGNPA  248 (269)
T ss_pred             EeccceeeecceeeccccccccccCCcccCCeEEccccEEe------CCeeECCCcEEeccceEEec-cCCCceecCCch
Confidence            444555555555553210   01233566666666665544      45555555556666655544 566667777766


Q ss_pred             E
Q psy9164         351 I  351 (380)
Q Consensus       351 ~  351 (380)
                      +
T Consensus       249 k  249 (269)
T KOG4750|consen  249 K  249 (269)
T ss_pred             h
Confidence            5

>KOG1460|consensus

Probab=98.57  E-value=2.8e-07  Score=78.99  Aligned_cols=121  Identities=31%  Similarity=0.409  Sum_probs=86.2

Q ss_pred             ECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccc
Q psy9164         235 IGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI  313 (380)
Q Consensus       235 i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~  313 (380)
                      |-.+++|.+.+.+.+.++|+ |+.||.+++||+++++.+|+|-++|.|.+|+.+      -++++|..+.||.++.+..-
T Consensus       285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavV------l~sIigw~s~iGrWaRVe~~  358 (407)
T KOG1460|consen  285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVV------LHSIIGWKSSIGRWARVEGI  358 (407)
T ss_pred             EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceE------Eeeeecccccccceeeeccc
Confidence            33455555555555555555 556688888999999999999999999999888      68999999999999887532


Q ss_pred             eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      -+-.....  .-               ..-+++|+.+.++|.+.|-+.-|+|+++++.++- ++||
T Consensus       359 pv~~s~~~--~~---------------~a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~-~eIi  406 (407)
T KOG1460|consen  359 PVEPSPNL--PF---------------AALTILGADVSVEDEVIVLNSIVLPNKELNVSVQ-DEII  406 (407)
T ss_pred             ccccCCCC--Cc---------------ceeEEecccceecceeEEeeeeEecCCccceeee-ccee
Confidence            11100000  00               0225667888899999998888889999988876 3554

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=98.50  E-value=5.4e-06  Score=71.63  Aligned_cols=175  Identities=15%  Similarity=0.190  Sum_probs=110.3

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEee----cCCCCCCchHHHHhHHhhCC---CCCcE
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSH----ENEPLGTAGPLALAKDILNK---SQEPF   72 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~----~~~~~gt~~al~~a~~~i~~---~~~~~   72 (380)
                      ||+|+++.+.+++ +++|+|++  ..+.+.+++.+    .+..+.+..    .....|+.++++.+.+.+..   ..+.+
T Consensus        28 ll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~v  101 (223)
T cd02513          28 LIAWTIEAALESKLFDRVVVST--DDEEIAEVARK----YGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFDIV  101 (223)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH----hCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEE
Confidence            6899999999987 78887765  34566666543    233222222    13345778889988887742   12568


Q ss_pred             EEEeCCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCC-ceeEEEeCC-----CCCCCCeEEEEEEE
Q psy9164          73 FVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG-CIESFIEKP-----QEFVSNKINAGMYI  144 (380)
Q Consensus        73 lv~~gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~-~v~~~~ek~-----~~~~~~~~~~giyi  144 (380)
                      +++.||.  +....+.++++.+.+.+++.++.+.+..+...++... ++++ .+..+.++.     ..+.....+.|+|+
T Consensus       102 lv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~  180 (223)
T cd02513         102 VLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGL-DDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYI  180 (223)
T ss_pred             EEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheee-ccCCceeccCcccccCCcCCChhHeeECCEEEE
Confidence            9999999  6677799999999887777676666655544443332 2222 222222211     12233456889999


Q ss_pred             eCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEecc-EEEecCChhhHHHH
Q psy9164         145 FNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKG  195 (380)
Q Consensus       145 ~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a  195 (380)
                      ++++.+......        +     .+++..+.... ...+|+++.|+..+
T Consensus       181 ~~~~~~~~~~~~--------~-----g~~~~~~~~~~~~~~dI~~~~D~~~a  219 (223)
T cd02513         181 AKREALLESNSF--------F-----GGKTGPYEMPRERSIDIDTEEDFELA  219 (223)
T ss_pred             EEHHHHHhcCCc--------c-----CCCeEEEEeCccceeCCCCHHHHHHH
Confidence            999977443111        0     34565665555 47999999998665

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.48  E-value=4.3e-07  Score=90.71  Aligned_cols=15  Identities=13%  Similarity=0.109  Sum_probs=8.1

Q ss_pred             eEEcCCCEECCceEE
Q psy9164         273 CIIGWKCVVGQWVRM  287 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i  287 (380)
                      +.||++|.|+++|.+
T Consensus       617 v~IGd~~~I~~~~~i  631 (695)
T TIGR02353       617 VTIGDDSTLNEGSVI  631 (695)
T ss_pred             eEECCCCEECCCCEE
Confidence            355555555555555

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.46  E-value=8.4e-07  Score=88.70  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=32.4

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +.++||++|+||.++.+.+++.||+++.||+++.+..|     ..|+++..+.|.|.+
T Consensus       159 g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g-----~~v~~~~~~~G~PA~  211 (695)
T TIGR02353       159 GPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGG-----QSIPDGERWHGSPAQ  211 (695)
T ss_pred             cCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCC-----cccCCCCEEEeeCCE
Confidence            45567777777777666666666666666666555322     345555566666554

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>KOG1322|consensus

Probab=98.30  E-value=1.1e-06  Score=76.64  Aligned_cols=106  Identities=31%  Similarity=0.422  Sum_probs=77.1

Q ss_pred             CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEE
Q psy9164         238 NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVL  316 (380)
Q Consensus       238 ~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~i  316 (380)
                      ++.+.+-..+|++|.|+ |++||.+|+|++++.+.+|.+..+..++..+.+      ..++.|.++.||.++.|.+.++|
T Consensus       264 nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i------~s~ivg~~~~IG~~~~id~~a~l  337 (371)
T KOG1322|consen  264 NVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEI------SSSIVGWNVPIGIWARIDKNAVL  337 (371)
T ss_pred             cEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHH------HhhhccccccccCceEEecccEe
Confidence            33333334444444454 356688888899999999999999999999998      77888999999999888777777


Q ss_pred             CCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         317 GEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       317 g~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |++|.                              |.+.-.+-++.++|+++....+|.+++|
T Consensus       338 G~nV~------------------------------V~d~~~vn~g~~l~~ks~~~~v~~~~iI  370 (371)
T KOG1322|consen  338 GKNVI------------------------------VADEDYVNEGSGLPIKSGITVVLKPAII  370 (371)
T ss_pred             ccceE------------------------------EecccccccceeEEeccceeeccccccc
Confidence            77777                              4444455455666777777777766665

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=98.27  E-value=1.1e-05  Score=69.51  Aligned_cols=178  Identities=13%  Similarity=0.143  Sum_probs=110.6

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      ||+|+++.+.++ ++++++|++++.. +.+.+++...     ..+.+.....  +..++++.+...+. ..+.++++.||
T Consensus        29 ll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~sl~~~l~~~~-~~d~vlv~~~D  100 (217)
T TIGR00453        29 LLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----AVPKIVAGGD--TRQDSVRNGLKALK-DAEWVLVHDAA  100 (217)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----CcEEEeCCCc--hHHHHHHHHHHhCC-CCCEEEEccCc
Confidence            689999999998 8999999998764 5555555321     1122332211  23477888887771 14568999999


Q ss_pred             c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC-
Q psy9164          79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI-  155 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~-  155 (380)
                      .  +....++.+++.+++.+  ++++..+..+    ++..++++|.+..+.++.   ....+.+ .|.|+...+..+.. 
T Consensus       101 ~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~v~~~~~~g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~  170 (217)
T TIGR00453       101 RPFVPKELLDRLLEALRKAG--AAILALPVAD----TLKRVEADGFIVETVDRE---GLWAAQT-PQAFRTELLKKALAR  170 (217)
T ss_pred             cCCCCHHHHHHHHHHHhhCC--cEEEeEeccc----eEEEEcCCCceeecCChH---HeEEEeC-CCcccHHHHHHHHHH
Confidence            8  55566899999876643  3344443332    344556667777777642   1233344 68899988865422 


Q ss_pred             --CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHH
Q psy9164         156 --KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       156 --~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~  196 (380)
                        .......|....+.+.+ ++.....+....+++++.|+..+.
T Consensus       171 ~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae  214 (217)
T TIGR00453       171 AKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAE  214 (217)
T ss_pred             HHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHH
Confidence              11111133344444444 566666666678999999987663

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>KOG4042|consensus

Probab=98.27  E-value=1.7e-06  Score=66.22  Aligned_cols=92  Identities=16%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             ccccceeeCCCCEECCCcEEC---CCcEECCCCEEcCCcEEec--------------eEEccCCEECCCcEecCeEEcCC
Q psy9164         216 GIVGNVLVDPTATIGPGCRIG---PNVTIGPGVVIEGGVCIKR--------------STILRDAIVKSHSWLEGCIIGWK  278 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~~~ig~~  278 (380)
                      .|.+.+.|+++++++|.+++.   ...+||+|+.|++.+.|.+              -+||..-.+.-+|...-..+|++
T Consensus        22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~  101 (190)
T KOG4042|consen   22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR  101 (190)
T ss_pred             ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence            455666666666666666553   3557888888877776643              34566555555555556677777


Q ss_pred             CEECCceEEeeeeEecceEECccceeCcceEEcc
Q psy9164         279 CVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN  312 (380)
Q Consensus       279 ~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~  312 (380)
                      ..|+..|+++     .++.+.++|.+|+.|.+-.
T Consensus       102 NVieskayvg-----~gv~vssgC~vGA~c~v~~  130 (190)
T KOG4042|consen  102 NVIESKAYVG-----DGVSVSSGCSVGAKCTVFS  130 (190)
T ss_pred             ceEeeeeEec-----CCcEEcCCceeccceEEec
Confidence            7777776662     2444444454554444433

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=98.25  E-value=6.7e-06  Score=67.05  Aligned_cols=94  Identities=26%  Similarity=0.322  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+++.+.++++++|+|++++  +++.+++..    .++++..... ...|.+.+++.+...+. ..+.|++++||+.
T Consensus        26 li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~~~~v~~~~-~~~G~~~sl~~a~~~~~-~~~~vlv~~~D~p   97 (160)
T PF12804_consen   26 LIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YGIKVVVDPE-PGQGPLASLLAALSQLP-SSEPVLVLPCDQP   97 (160)
T ss_dssp             HHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TTSEEEE-ST-SSCSHHHHHHHHHHTST-TSSEEEEEETTET
T ss_pred             HHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cCceEEEecc-ccCChHHHHHHHHHhcc-cCCCcEEEeCCcc
Confidence            68999999999999999999998  566666644    3556644333 35899999999999882 3788999999993


Q ss_pred             --cCCChHHHHHHHHhcCCcEEEE
Q psy9164          81 --CDFPFKDLVSFHKNHGKEGTIV  102 (380)
Q Consensus        81 --~~~~l~~~l~~h~~~~~~~tl~  102 (380)
                        ....++++++.+.+.+.+..+.
T Consensus        98 ~~~~~~l~~l~~~~~~~~~~i~~~  121 (160)
T PF12804_consen   98 FLSPELLRRLLEALEKSPADIVVP  121 (160)
T ss_dssp             TS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred             ccCHHHHHHHHHHHhccCCcEEEE
Confidence              3455899999888776655543

...

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=98.24  E-value=2.3e-05  Score=65.73  Aligned_cols=93  Identities=18%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+.++++++++|++++..+++.+.+..   ..++++... .....|++.+++.+.... ...+.++++.||. 
T Consensus        27 ll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~---~~~v~~v~~-~~~~~g~~~si~~~l~~~-~~~~~vlv~~~D~P  101 (188)
T TIGR03310        27 ILEHVVDNALRLFFDEVILVLGHEADELVALLAN---HSNITLVHN-PQYAEGQSSSIKLGLELP-VQSDGYLFLLGDQP  101 (188)
T ss_pred             HHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc---CCCeEEEEC-cChhcCHHHHHHHHhcCC-CCCCEEEEEeCCcC
Confidence            6899999999999999999999887666555532   224444322 223458888998888732 2256799999998 


Q ss_pred             -ccCCChHHHHHHHHhcCCc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKE   98 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~   98 (380)
                       +....++.+++.+.+....
T Consensus       102 ~i~~~~i~~l~~~~~~~~~~  121 (188)
T TIGR03310       102 FVTPDIIQLLLEAFALKNDE  121 (188)
T ss_pred             CCCHHHHHHHHHHHHhCCCc
Confidence             4455688888887665543

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.17  E-value=1.5e-05  Score=65.93  Aligned_cols=71  Identities=18%  Similarity=0.320  Sum_probs=59.7

Q ss_pred             ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164         255 RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       255 ~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~  331 (380)
                      +.+.-..+.||+++.+...++++...+|+++.|      .+.+++.++.|+.||.+..++..+.+..||+.+.|.+-
T Consensus        16 ~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i------~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gk   86 (277)
T COG4801          16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRI------YGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGK   86 (277)
T ss_pred             eEEEeccEEEcccceeeeeeeeeeEEeccCcEE------eeeEEecceeeeeeeEeeccEEEcCceEEeccceeeee
Confidence            445556677788888888899999999999999      67788899999999999988999999999999888643

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=98.16  E-value=0.00033  Score=58.30  Aligned_cols=192  Identities=17%  Similarity=0.288  Sum_probs=125.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCc-EEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEP-FFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~-~lv~~gD~   79 (380)
                      ||.|+.++..++|..+++|.+.  .+.+.+++.+    +|.+...-......|| +.+..+...+...+++ ++=+.||.
T Consensus        30 mI~rV~e~a~~s~~~rvvVATD--de~I~~av~~----~G~~avmT~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDe  102 (247)
T COG1212          30 MIVRVAERALKSGADRVVVATD--DERIAEAVQA----FGGEAVMTSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDE  102 (247)
T ss_pred             HHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH----hCCEEEecCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCC
Confidence            7899999999999999999865  5667777765    3556655555566676 6677776666322333 33346998


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCC-----CceeEEEECCCCceeEEEeCCCCCC-------CCeEEEEEEEe
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-----SKYGVVLYNEHGCIESFIEKPQEFV-------SNKINAGMYIF  145 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-----~~~g~v~~d~~~~v~~~~ek~~~~~-------~~~~~~giyi~  145 (380)
                        +-...++++++..++.++++.-+..+..++     ..--.+..|.+|+-+.|...|-.+.       .-+--.|+|-|
T Consensus       103 P~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYay  182 (247)
T COG1212         103 PFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAY  182 (247)
T ss_pred             CCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccccCCcchhheeehHHh
Confidence              344447888888887777665555544322     1122355678889999987654222       23456899999


Q ss_pred             CHhHHhhccC-CCCCccc-chhhhh---hcCCcEEEEEeccEE-EecCChhhHHHHHHHH
Q psy9164         146 NPSVLDRIEI-KPTSIEK-EIFPLM---SKEKQLYAMELKGFW-MDVGQPRDFLKGMCLY  199 (380)
Q Consensus       146 ~~~~l~~l~~-~~~~~~~-~il~~l---~~~~~i~~~~~~~~~-~~i~~~~~~~~a~~~~  199 (380)
                      ++++++.+-. .+..++. +-|.+|   -...++......... ..++|++|+-++...+
T Consensus       183 r~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~  242 (247)
T COG1212         183 RAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKIL  242 (247)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHH
Confidence            9999987743 3333332 234333   333477777766554 8899999987775443

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=98.11  E-value=2e-05  Score=65.61  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|++++|..+++++++++++++.+.++.++.+.    ...  +. .....|...++..+.+.+. ..++|+++.||+ 
T Consensus        29 lI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~--~~-~~~g~G~~~~l~~al~~~~-~~~~~lv~~~D~P  100 (183)
T TIGR00454        29 LIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKD--YK-NASGKGYIEDLNECIGELY-FSEPFLVVSSDLI  100 (183)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcE--EE-ecCCCCHHHHHHHHhhccc-CCCCEEEEeCCcC
Confidence            68999999999999999999999888999998652    111  22 2344455567777777542 267899999998 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEE
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGT  100 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~t  100 (380)
                       +....+..+++.+...+....
T Consensus       101 ~i~~~~i~~li~~~~~~~~~~~  122 (183)
T TIGR00454       101 NLRSKIIDSIVDYYYCIKAPAL  122 (183)
T ss_pred             cCCHHHHHHHHHHHHhcCCCce
Confidence             557778999998876554433

At this time this gene appears to be present only in Archea

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=98.05  E-value=0.00012  Score=63.31  Aligned_cols=182  Identities=12%  Similarity=0.105  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      ||+|+++++..++ +++++|++++.. +.+.+.+..   .. ..+.+...  ..+.+++++.+.+.+.+ .+.++++.||
T Consensus        33 li~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~~~--~~~~~~sv~~~l~~~~~-~d~vlv~~~D  105 (227)
T PRK00155         33 ILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVVAG--GAERQDSVLNGLQALPD-DDWVLVHDAA  105 (227)
T ss_pred             HHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEeCC--cchHHHHHHHHHHhCCC-CCEEEEccCc
Confidence            6899999999875 899999998765 455443322   11 12223322  12457889998888732 4567888999


Q ss_pred             c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC
Q psy9164          79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK  156 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~  156 (380)
                      .  +....++++++.+++.+  ..++..+..++  +.  ..+++|.+..+.+..   ....+. +.|.|+.+.+..+...
T Consensus       106 ~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~--~~--~v~~~g~~~~~~~r~---~~~~~~-~p~~f~~~~l~~~~~~  175 (227)
T PRK00155        106 RPFLTPDDIDRLIEAAEETG--AAILAVPVKDT--IK--RSDDGGGIVDTPDRS---GLWAAQ-TPQGFRIELLREALAR  175 (227)
T ss_pred             cCCCCHHHHHHHHHHHhhCC--CEEEEEecccc--EE--EEcCCCceeecCChH---Hheeee-CCccchHHHHHHHHHH
Confidence            7  55666899999887654  33334444332  22  224456665554321   112223 3889998887655321


Q ss_pred             C---CCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         157 P---TSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       157 ~---~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                      .   .....+....+.+.+ ++.....+..+.+++++.|+..+...+
T Consensus       176 ~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~  222 (227)
T PRK00155        176 ALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAIL  222 (227)
T ss_pred             HHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHH
Confidence            1   111122233333333 566666666678999999997775443

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=98.04  E-value=0.00019  Score=66.54  Aligned_cols=174  Identities=11%  Similarity=0.076  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.+++ +++|+|++++......+.+...   .. .+.+..  ...+..++++.+.+.+.  .+.+++..||.
T Consensus        35 ll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~---~~-~v~~v~--gG~~r~~SV~~gL~~l~--~d~VLVhdadr  106 (378)
T PRK09382         35 LWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE---IK-FVTLVT--GGATRQESVRNALEALD--SEYVLIHDAAR  106 (378)
T ss_pred             HHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc---CC-eEEEeC--CCchHHHHHHHHHHhcC--CCeEEEeeccc
Confidence            5899999999998 7999999987655444433221   11 122322  22335678999988884  34578888886


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP  157 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~  157 (380)
                        +....+..+++..++.  ..++...++.++.+|+...+|.+ ++.. .++|..+....           .++... ..
T Consensus       107 Pfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR~-~l~~-~QTPQ~f~~~~-----------l~~a~~-~~  170 (378)
T PRK09382        107 PFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDRE-GLKL-IQTPQLSRTKT-----------LKAAAD-GR  170 (378)
T ss_pred             cCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCcc-cEEE-EECCCCCCHHH-----------HHHHHh-CC
Confidence              4445578888876544  46777788888888875555433 4433 37776543322           111111 11


Q ss_pred             CCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         158 TSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       158 ~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                      ..+ .|-.+.+...+ ++....-+..|.++.+|+|+..+...+
T Consensus       171 ~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l  212 (378)
T PRK09382        171 GDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL  212 (378)
T ss_pred             CCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence            222 34455555555 778888888999999999998775543

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=98.02  E-value=6.2e-05  Score=64.76  Aligned_cols=179  Identities=12%  Similarity=0.144  Sum_probs=108.6

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD   78 (380)
                      ||+|+++++..++ +++++|++++........+....  ....+.+....  .+...+++.+.+.+.. ..+.++++.||
T Consensus        30 ll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D  105 (218)
T cd02516          30 VLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYG--LSKVVKIVEGG--ATRQDSVLNGLKALPDADPDIVLIHDAA  105 (218)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcc--cCCCeEEECCc--hHHHHHHHHHHHhcccCCCCEEEEccCc
Confidence            6899999999987 99999999887655544432111  11223333322  2446789999888731 24557888999


Q ss_pred             c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC
Q psy9164          79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK  156 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~  156 (380)
                      .  +....++++++.+++.++  .+...+..+.    ....|++|.+..+.+..   ....+.+. ++|+.+.+..+...
T Consensus       106 ~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~~----~~~~~~~g~~~~~~~r~---~~~~~~~P-~~f~~~~~~~~~~~  175 (218)
T cd02516         106 RPFVSPELIDRLIDALKEYGA--AIPAVPVTDT----IKRVDDDGVVVETLDRE---KLWAAQTP-QAFRLDLLLKAHRQ  175 (218)
T ss_pred             CCCCCHHHHHHHHHHHhhCCc--EEEEEecccc----EEEecCCCceeecCChH---HhhhhcCC-CcccHHHHHHHHHH
Confidence            7  555668999998866543  2333333222    23356778888887642   23445666 88998888665221


Q ss_pred             ---CCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHH
Q psy9164         157 ---PTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFL  193 (380)
Q Consensus       157 ---~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~  193 (380)
                         ......|....+.+.+ ++........-.++++|.++.
T Consensus       176 ~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~  216 (218)
T cd02516         176 ASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLA  216 (218)
T ss_pred             HHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHh
Confidence               1111223344444433 565555555556999999874

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=98.00  E-value=0.00075  Score=58.10  Aligned_cols=176  Identities=18%  Similarity=0.230  Sum_probs=111.9

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEee----cCCCCCCchHHHHhHHhhCC--CCCcEE
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSH----ENEPLGTAGPLALAKDILNK--SQEPFF   73 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~----~~~~~gt~~al~~a~~~i~~--~~~~~l   73 (380)
                      ||+|+++.+.+++ +++|+|.+.  .+++.+...+    .+.++.+..    .....++.++++++.+.+..  ..+.++
T Consensus        26 Li~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~----~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~   99 (222)
T TIGR03584        26 MIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS----YGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHAC   99 (222)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH----cCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEE
Confidence            6899999999987 577766443  4556665543    345544321    23456778899999887732  134588


Q ss_pred             EEeCCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCC-----CCC-CCCeEEEEEEEe
Q psy9164          74 VLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKP-----QEF-VSNKINAGMYIF  145 (380)
Q Consensus        74 v~~gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~-----~~~-~~~~~~~giyi~  145 (380)
                      ++.+|.  +...++..+++.+.+.+++..+.+.+.+.+..+.. ..+++|++..+....     .+. ..-..+..+|++
T Consensus       100 ~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~  178 (222)
T TIGR03584       100 CIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWG  178 (222)
T ss_pred             EecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCCCcEEecCCCcccCCCCCCchheeeCCeEEEE
Confidence            899998  45567999999988876777777766544333332 334566665554221     111 123458999999


Q ss_pred             CHhHHhhccCCCCCcccchhhhhhcCCcEEEEEecc-EEEecCChhhHHHHH
Q psy9164         146 NPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKGM  196 (380)
Q Consensus       146 ~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a~  196 (380)
                      +++.+..-.  .      ++     .++...+..+. ...||+++.||..+.
T Consensus       179 ~~~~~~~~~--~------~~-----~~~~~~~~m~~~~~iDID~~~D~~~ae  217 (222)
T TIGR03584       179 KSQAWLESG--P------IF-----SPHSIPIVLPRHLVQDIDTLEDWERAE  217 (222)
T ss_pred             EHHHHHhcC--C------cc-----CCCcEEEEeCccceeCCCCHHHHHHHH
Confidence            999774321  0      00     34566666654 489999999987663

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=97.87  E-value=9.9e-05  Score=61.61  Aligned_cols=92  Identities=21%  Similarity=0.368  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+..+++++++|++++..+.+.+++..    .++.+.. .+....|++.+++.+.+++....+.++++.||+ 
T Consensus        28 li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~-~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P  102 (186)
T cd04182          28 LLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVVVI-NPDWEEGMSSSLAAGLEALPADADAVLILLADQP  102 (186)
T ss_pred             HHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEEEe-CCChhhCHHHHHHHHHHhccccCCEEEEEeCCCC
Confidence            6899999999999999999999877776666543    2343322 233446889999999988842246699999998 


Q ss_pred             -ccCCChHHHHHHHHhcCC
Q psy9164          80 -ICDFPFKDLVSFHKNHGK   97 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~   97 (380)
                       +....++.+++.+.+...
T Consensus       103 ~i~~~~i~~l~~~~~~~~~  121 (186)
T cd04182         103 LVTAETLRALIDAFREDGA  121 (186)
T ss_pred             CCCHHHHHHHHHHHHhCCC
Confidence             445557888887765443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.85  E-value=2.6e-05  Score=45.89  Aligned_cols=32  Identities=16%  Similarity=0.410  Sum_probs=15.7

Q ss_pred             EECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      .||++++|++++.+.+++.||+++.|++++.|
T Consensus         3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            34444555555554555555555555554444

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.80  E-value=4e-05  Score=44.12  Aligned_cols=29  Identities=24%  Similarity=0.510  Sum_probs=10.9

Q ss_pred             ECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         298 IGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      ||++|+||+++.+  ++.||+++.|+++++|
T Consensus         4 IG~~~~ig~~~~i--gi~igd~~~i~~g~~I   32 (34)
T PF14602_consen    4 IGDNCFIGANSTI--GITIGDGVIIGAGVVI   32 (34)
T ss_dssp             E-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred             ECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence            4444444444444  2444444444444443

...

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=97.79  E-value=0.0014  Score=52.48  Aligned_cols=82  Identities=21%  Similarity=0.319  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||.|+++.|.+ .+.++++.++.+...+++|+.+    .++++  ...+ ..|-..-++.+.+.+   ..+||++++|+ 
T Consensus        29 LI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~----~gv~v--i~tp-G~GYv~Dl~~al~~l---~~P~lvvsaDLp   97 (177)
T COG2266          29 LIDRVLEALRK-IVDEIIVAISPHTPKTKEYLES----VGVKV--IETP-GEGYVEDLRFALESL---GTPILVVSADLP   97 (177)
T ss_pred             HHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHh----cCceE--EEcC-CCChHHHHHHHHHhc---CCceEEEecccc
Confidence            78999999998 9999999999999999999977    23443  3322 235566788889999   55999999999 


Q ss_pred             ccCC-ChHHHHHHHH
Q psy9164          80 ICDF-PFKDLVSFHK   93 (380)
Q Consensus        80 i~~~-~l~~~l~~h~   93 (380)
                      +.+. .+..+.+.+.
T Consensus        98 ~l~~~~i~~vi~~~~  112 (177)
T COG2266          98 FLNPSIIDSVIDAAA  112 (177)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            3343 3566666554

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=97.73  E-value=0.0015  Score=53.91  Aligned_cols=159  Identities=18%  Similarity=0.281  Sum_probs=101.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      |++|+++.+.++++++++++++|.. +.......    ..+.++.++.++ ..|-+.+++.+.......++-.+++.||+
T Consensus        33 lv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~npd~-~~Gls~Sl~ag~~a~~~~~~~v~~~lgDm  107 (199)
T COG2068          33 LVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVNPDY-AQGLSTSLKAGLRAADAEGDGVVLMLGDM  107 (199)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeCcch-hhhHhHHHHHHHHhcccCCCeEEEEeCCC
Confidence            5789999999999999999999973 33333332    234555555443 45888999999998852234689999998


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP  157 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~  157 (380)
                        +...+++.+++.++.++ .  +......             |.                ..+-.+|+++.|..+..-.
T Consensus       108 P~V~~~t~~rl~~~~~~~~-~--~v~p~~~-------------g~----------------rG~Pv~~~~~~~~~l~~l~  155 (199)
T COG2068         108 PQVTPATVRRLIAAFRARG-A--AVRPVYG-------------GA----------------RGHPVLLSKDLFPALARLS  155 (199)
T ss_pred             CCCCHHHHHHHHHhccccC-c--eeeeecc-------------CC----------------cCCceeechhHHHHHhhcC
Confidence              77788999998876662 1  1111000             00                0223456777776664433


Q ss_pred             CCcccchhhhhhcCCcEEEEE--e-ccEEEecCChhhHHHHHHHH
Q psy9164         158 TSIEKEIFPLMSKEKQLYAME--L-KGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       158 ~~~~~~il~~l~~~~~i~~~~--~-~~~~~~i~~~~~~~~a~~~~  199 (380)
                      .+  . -...++++.+.....  . .+...|++||++|.++...+
T Consensus       156 GD--~-G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~  197 (199)
T COG2068         156 GD--V-GARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL  197 (199)
T ss_pred             Cc--h-hHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence            33  1 133445454433333  2 67899999999998876544

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=97.42  E-value=0.0015  Score=61.59  Aligned_cols=46  Identities=17%  Similarity=0.159  Sum_probs=37.0

Q ss_pred             CCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164         244 GVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN  289 (380)
Q Consensus       244 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~  289 (380)
                      .+.+.+.+.+.+|++..++.+++++.|++|.++.++.||++|.|.+
T Consensus       273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG  318 (414)
T PF07959_consen  273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG  318 (414)
T ss_pred             ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence            3456677788888888888888888888888888888888888844

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=97.35  E-value=0.002  Score=65.91  Aligned_cols=201  Identities=11%  Similarity=0.158  Sum_probs=105.8

Q ss_pred             cEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCC--CceeEEEeCCC--------CCCCCeE
Q psy9164          71 PFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEH--GCIESFIEKPQ--------EFVSNKI  138 (380)
Q Consensus        71 ~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~--~~v~~~~ek~~--------~~~~~~~  138 (380)
                      ..+|..||++..++-  .+...  ..++++......  +-....|+...|.+  +++..+..||.        +...-++
T Consensus       154 g~li~~gDv~~~f~~--~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~  229 (974)
T PRK13412        154 HTLIASGDVYIRSEQ--PLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM  229 (974)
T ss_pred             ceEEEecchhhhccc--cccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence            689999998655441  11111  223444433332  22467899888866  67888888886        1233578


Q ss_pred             EEEEEEeCHhHHhhccCC------CC----Ccccchhhhhhc----------CCcEEEEEe-ccEEEecCChhhHHHHHH
Q psy9164         139 NAGMYIFNPSVLDRIEIK------PT----SIEKEIFPLMSK----------EKQLYAMEL-KGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       139 ~~giyi~~~~~l~~l~~~------~~----~~~~~il~~l~~----------~~~i~~~~~-~~~~~~i~~~~~~~~a~~  197 (380)
                      |+|+|+|+..+.+.+...      +.    ++..|++..|-.          .-++....+ ++.+.-+||..+|+....
T Consensus       230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~  309 (974)
T PRK13412        230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL  309 (974)
T ss_pred             eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence            999999999888665211      11    222233322211          123444444 456888999888774322


Q ss_pred             HHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCC-cEEeceEEccCCEECCCcEecCeEE-
Q psy9164         198 LYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGG-VCIKRSTILRDAIVKSHSWLEGCII-  275 (380)
Q Consensus       198 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~-~~i~~~~i~~~~~i~~~~~i~~~~i-  275 (380)
                      .+....... +..+.....  +    +|      .+.+ -|+++..++.++++ ++|.+|.|+.+..||.++.|.++.. 
T Consensus       310 ~~q~~~~~~-~~i~~~~~~--~----~~------~~~v-~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~  375 (974)
T PRK13412        310 AVQNLVTDQ-RRIMHRKVK--P----HP------AMFV-QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPEN  375 (974)
T ss_pred             hHHHHhhhh-hhhhccccC--C----CC------ceEE-EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccccc
Confidence            222211110 000111000  0    00      1111 36666666666665 3466677777777777777766542 


Q ss_pred             cCCCEECCceEEee
Q psy9164         276 GWKCVVGQWVRMEN  289 (380)
Q Consensus       276 g~~~~ig~~~~i~~  289 (380)
                      .-+..|-+++.++.
T Consensus       376 ~~~~~vP~~~ci~~  389 (974)
T PRK13412        376 SWNLDLPEGVCIDV  389 (974)
T ss_pred             ccceecCCCcEEEE
Confidence            22355666666643

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=97.19  E-value=0.00011  Score=64.98  Aligned_cols=129  Identities=13%  Similarity=0.161  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHH--------cCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcE
Q psy9164           1 MLLHQIEALVE--------AGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPF   72 (380)
Q Consensus         1 li~~~l~~l~~--------~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~   72 (380)
                      +|+|+++++.+        .++..+++...+..++++++++++....+..+.+.++..+..+++......+...  -+.+
T Consensus        33 ~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~--~~~~  110 (266)
T cd04180          33 FLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNSYVITFMQGKLPLKNDDDARDPHNKTK--CHLF  110 (266)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCCceEEEEeCCceEEeCCCCcccCCCCc--eeec
Confidence            47888888876        3577777777788899999999854123344446666667777776552222110  1345


Q ss_pred             EEEeCCcccCCChHHHHHHHHhcCCc------EEEEEEEcCCCCceeEEEECCCCceeEEEeCCC
Q psy9164          73 FVLNSDIICDFPFKDLVSFHKNHGKE------GTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ  131 (380)
Q Consensus        73 lv~~gD~i~~~~l~~~l~~h~~~~~~------~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~  131 (380)
                      ..-+||++.......+++.|++++..      .+.++..+.+|.-+|+...++.+....+.+|+.
T Consensus       111 P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~lG~~~~~~~~~~~kvv~K~~  175 (266)
T cd04180         111 PCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIGIAIQNRKAINQKVVPKTR  175 (266)
T ss_pred             cCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHHHHHHHcCCCEEEEEEECCC
Confidence            66789999999999999999999876      333444555777778777767778888888865

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=97.12  E-value=0.012  Score=50.99  Aligned_cols=183  Identities=9%  Similarity=0.141  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      ||+|+++.+..++ +.+++|+++... ..+.+++.+.... ...+.+..  ...+-.++++.+...+. ..+.++++.||
T Consensus        32 ll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v~--~g~~r~~sv~~gl~~~~-~~d~vli~~~d  107 (230)
T PRK13385         32 IFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVVK--GGTERQESVAAGLDRIG-NEDVILVHDGA  107 (230)
T ss_pred             HHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEcC--CCchHHHHHHHHHHhcc-CCCeEEEccCC
Confidence            6899999999864 899999987643 4444555432110 01222222  11122478888888874 12346777899


Q ss_pred             c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC-
Q psy9164          79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI-  155 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~-  155 (380)
                      .  +....+.++++.+++.++.  +...+..+     .+....++.+....++..    -+.--..+.|+.+.+...-. 
T Consensus       108 ~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d-----ti~~~~~~~~~~~i~r~~----~~~~qtpq~f~~~~l~~~~~~  176 (230)
T PRK13385        108 RPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD-----TVKRVKDKQVIETVDRNE----LWQGQTPQAFELKILQKAHRL  176 (230)
T ss_pred             CCCCCHHHHHHHHHHHhhCCcE--EEEEeccc-----eEEEEcCCeeEeccCHHH----HhhhcCCceeeHHHHHHHHHH
Confidence            8  4445588999988766533  22233222     122223344444333211    11122367777776654311 


Q ss_pred             --CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         156 --KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       156 --~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                        .......+-...+.+.+ ++...+-+.....+.+|+|+..+...
T Consensus       177 ~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~  222 (230)
T PRK13385        177 ASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAI  222 (230)
T ss_pred             HHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHH
Confidence              11111223333333333 56666666678899999998877444

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=97.10  E-value=0.0028  Score=52.69  Aligned_cols=80  Identities=21%  Similarity=0.265  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+... +.+|+|++++..+.   +. .    .++++.. .+....|...+++.+...+.  .+.++++.||+ 
T Consensus        28 ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~----~~~~~v~-~~~~~~G~~~si~~~l~~~~--~~~vlv~~~D~P   95 (181)
T cd02503          28 LLEHVLERLKPL-VDEVVISANRDQER---YA-L----LGVPVIP-DEPPGKGPLAGILAALRAAP--ADWVLVLACDMP   95 (181)
T ss_pred             HHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h----cCCcEee-CCCCCCCCHHHHHHHHHhcC--CCeEEEEeCCcC
Confidence            689999999988 99999999887654   11 1    2344322 22356788899999998884  57799999999 


Q ss_pred             -ccCCChHHHHHHH
Q psy9164          80 -ICDFPFKDLVSFH   92 (380)
Q Consensus        80 -i~~~~l~~~l~~h   92 (380)
                       +....++.+++.+
T Consensus        96 ~i~~~~i~~l~~~~  109 (181)
T cd02503          96 FLPPELLERLLAAA  109 (181)
T ss_pred             CCCHHHHHHHHHhh
Confidence             3444577777765

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=96.98  E-value=0.0042  Score=52.07  Aligned_cols=91  Identities=14%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHH---HHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEe
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQM---EDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i---~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~   76 (380)
                      ||+|+++.+.+.++.+++|++++..+.+   .++...   ..++.+.... ....|.+.+++.+...+.. ..+.++++.
T Consensus        28 ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~G~~~si~~gl~~~~~~~~d~vlv~~  103 (190)
T TIGR03202        28 LGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLA---DERIMLVCCR-DACEGQAHSLKCGLRKAEAMGADAVVILL  103 (190)
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhc---CCCeEEEECC-ChhhhHHHHHHHHHHHhccCCCCeEEEEe
Confidence            5899999888889999999998765432   222211   1234443333 3344778889988887632 245689999


Q ss_pred             CCc--ccCCChHHHHHHHHhc
Q psy9164          77 SDI--ICDFPFKDLVSFHKNH   95 (380)
Q Consensus        77 gD~--i~~~~l~~~l~~h~~~   95 (380)
                      ||+  +....+..+++..++.
T Consensus       104 ~D~P~v~~~~i~~L~~~~~~~  124 (190)
T TIGR03202       104 ADQPFLTADVINALLALAKRR  124 (190)
T ss_pred             CCCCCCCHHHHHHHHHHHhhC
Confidence            999  4444477777765443

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=96.88  E-value=0.0077  Score=50.23  Aligned_cols=87  Identities=10%  Similarity=0.109  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+.. ++++|+|++.+..+.   +...   ..+.++.....+...|+..+++.+.+.+.  .+.++++.||. 
T Consensus        29 ll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~~~~~g~~~si~~al~~~~--~~~vlv~~~D~P   99 (186)
T TIGR02665        29 LIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDALADFPGPLAGILAGLRWAG--TDWVLTVPCDTP   99 (186)
T ss_pred             HHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCCCCCCCCHHHHHHHHHhcC--CCeEEEEecCCC
Confidence            68999999986 599999988754432   2111   12344433323456799999999998884  56799999998 


Q ss_pred             ccCCC-hHHHHHHHHhcC
Q psy9164          80 ICDFP-FKDLVSFHKNHG   96 (380)
Q Consensus        80 i~~~~-l~~~l~~h~~~~   96 (380)
                      +.+.+ ++++++.+.+.+
T Consensus       100 ~i~~~~i~~l~~~~~~~~  117 (186)
T TIGR02665       100 FLPEDLVARLAAALEASD  117 (186)
T ss_pred             cCCHHHHHHHHHHhhccC
Confidence            44444 677777655433

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=96.85  E-value=0.0069  Score=50.92  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+. .++++++|+++...+...    .    .++++.....+...|...+++.+....+  .+.++++.||. 
T Consensus        32 ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~----~~~~~v~~~~~~~~g~~~~i~~~l~~~~--~~~vlv~~~D~P  100 (193)
T PRK00317         32 LIQHVIERLA-PQVDEIVINANRNLARYA----A----FGLPVIPDSLADFPGPLAGILAGLKQAR--TEWVLVVPCDTP  100 (193)
T ss_pred             HHHHHHHHHh-hhCCEEEEECCCChHHHH----h----cCCcEEeCCCCCCCCCHHHHHHHHHhcC--CCeEEEEcCCcC
Confidence            6899999998 789999999876543322    1    1333322212223677888988888763  46689999999 


Q ss_pred             ccC-CChHHHHHHHHhc
Q psy9164          80 ICD-FPFKDLVSFHKNH   95 (380)
Q Consensus        80 i~~-~~l~~~l~~h~~~   95 (380)
                      +.+ ..+..+++.+.+.
T Consensus       101 ~i~~~~i~~l~~~~~~~  117 (193)
T PRK00317        101 FIPPDLVARLAQAAGKD  117 (193)
T ss_pred             CCCHHHHHHHHHhhhcC
Confidence            444 4477777765433

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=96.32  E-value=0.061  Score=42.27  Aligned_cols=90  Identities=19%  Similarity=0.101  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      +|.++++.+.+.+  ..+++++.....+...+.+.+.... ...+......+..|.+.++..+.....  .+.++++.+|
T Consensus        11 ~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~v~~~d~D   87 (156)
T cd00761          11 YLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAAR--GEYILFLDAD   87 (156)
T ss_pred             HHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhc--CCEEEEECCC
Confidence            3678899999997  7889988887766666666553211 223445556777899999988888884  5668889999


Q ss_pred             cccCCCh-HHHHHHHH
Q psy9164          79 IICDFPF-KDLVSFHK   93 (380)
Q Consensus        79 ~i~~~~l-~~~l~~h~   93 (380)
                      .+...++ ..++..+.
T Consensus        88 ~~~~~~~~~~~~~~~~  103 (156)
T cd00761          88 DLLLPDWLERLVAELL  103 (156)
T ss_pred             CccCccHHHHHHHHHh
Confidence            9888774 44434433

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=96.26  E-value=0.11  Score=43.36  Aligned_cols=178  Identities=14%  Similarity=0.168  Sum_probs=101.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecC-----CCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN-----EPLGTAGPLALAKDILNKSQEPFFVL   75 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-----~~~gt~~al~~a~~~i~~~~~~~lv~   75 (380)
                      ||.|+++++.+++.-+=+++ ...++.|.+.-.+    .|.++- ...+     +...|-+++.++.+.++...+..+++
T Consensus        30 Li~~~I~aA~ns~~fd~Vvi-SsDs~~Il~~A~~----ygak~~-~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lL  103 (228)
T COG1083          30 LIGYTIEAALNSKLFDKVVI-SSDSEEILEEAKK----YGAKVF-LKRPKELASDRASTIDAALHALESFNIDEDTLILL  103 (228)
T ss_pred             hHHHHHHHHhcCCccceEEE-cCCcHHHHHHHHH----hCcccc-ccCChhhccCchhHHHHHHHHHHHhccccCeeEEe
Confidence            68999999999985444443 4455666555444    244442 2222     22233356677777774333336666


Q ss_pred             eCC--cccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC--CCC-----CCeEEEEEEEeC
Q psy9164          76 NSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ--EFV-----SNKINAGMYIFN  146 (380)
Q Consensus        76 ~gD--~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~--~~~-----~~~~~~giyi~~  146 (380)
                      .+-  +....++++.++.+.+.+.+..+.+.+.+...-..+ . +.+|.+..+-+.|.  ..+     ....+.-+|+++
T Consensus       104 q~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f-~-~~~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~  181 (228)
T COG1083         104 QPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAF-S-LNNGEVKPVNEDPDFETRRQDLPKAYRENGAIYINK  181 (228)
T ss_pred             ccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHH-H-hcCCceeecccCCccccccccchhhhhhcCcEEEeh
Confidence            544  478888999999999988777777776654311111 1 12355655555442  111     123467899999


Q ss_pred             HhHHhhccCCCCCcccchhhhhhcCCcEEEEEe-ccEEEecCChhhHHHHHHHH
Q psy9164         147 PSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL-KGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       147 ~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~-~~~~~~i~~~~~~~~a~~~~  199 (380)
                      ++.|..-+   .-|          ......|.. +....||++..|+..+....
T Consensus       182 ~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~  222 (228)
T COG1083         182 KDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLEIAENLI  222 (228)
T ss_pred             HHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHHHHHHHh
Confidence            99874321   000          112222333 33478999999987664443

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=96.18  E-value=0.017  Score=48.67  Aligned_cols=84  Identities=21%  Similarity=0.279  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+..+++.+++++++.  +++.++...    .++++  ..+... |...+++.+.+++....+.++++.||+ 
T Consensus        32 ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~--i~~~~~-G~~~si~~al~~~~~~~~~vlv~~~D~P  102 (195)
T TIGR03552        32 MLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPV--LRDPGP-GLNNALNAALAEAREPGGAVLILMADLP  102 (195)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEE--EecCCC-CHHHHHHHHHHHhhccCCeEEEEeCCCC
Confidence            68999999999988888888764  444555432    24444  333333 888999999887732224699999998 


Q ss_pred             -ccCCChHHHHHHHH
Q psy9164          80 -ICDFPFKDLVSFHK   93 (380)
Q Consensus        80 -i~~~~l~~~l~~h~   93 (380)
                       +....++++++.++
T Consensus       103 ~l~~~~i~~l~~~~~  117 (195)
T TIGR03552       103 LLTPRELKRLLAAAT  117 (195)
T ss_pred             CCCHHHHHHHHHhcc
Confidence             55566888887654

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=96.17  E-value=0.037  Score=48.01  Aligned_cols=91  Identities=19%  Similarity=0.275  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCCh--HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRA--EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS   77 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g   77 (380)
                      ||+|+++.+..++ +++++|+++...  +.+.+++..    .++++......   +.......+.....  .+.++++.|
T Consensus        26 li~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~v~~~~~---~~l~~~~~~~~~~~--~d~vli~~~   96 (233)
T cd02518          26 LLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKVFRGSEE---DVLGRYYQAAEEYN--ADVVVRITG   96 (233)
T ss_pred             HHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeEEECCch---hHHHHHHHHHHHcC--CCEEEEeCC
Confidence            6899999999998 899999998765  667776643    23444322221   11111122222221  456899999


Q ss_pred             Cc--ccCCChHHHHHHHHhcCCcEE
Q psy9164          78 DI--ICDFPFKDLVSFHKNHGKEGT  100 (380)
Q Consensus        78 D~--i~~~~l~~~l~~h~~~~~~~t  100 (380)
                      |.  +....++++++.++..+.+.+
T Consensus        97 D~P~i~~~~i~~li~~~~~~~~~~~  121 (233)
T cd02518          97 DCPLIDPEIIDAVIRLFLKSGADYT  121 (233)
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            98  455568899998876655444

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.03  E-value=0.034  Score=51.75  Aligned_cols=89  Identities=12%  Similarity=0.133  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+.. .+++++|++....+.+.+++.+      +.+.....+...|...+++.+...+.  .+.++++.||+ 
T Consensus        34 ll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~------~~~i~d~~~g~~G~~~si~~gl~~~~--~~~vlv~~~D~P  104 (366)
T PRK14489         34 LIERVVDRLRP-QFARIHLNINRDPARYQDLFPG------LPVYPDILPGFQGPLSGILAGLEHAD--SEYLFVVACDTP  104 (366)
T ss_pred             HHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC------CcEEecCCCCCCChHHHHHHHHHhcC--CCcEEEeeCCcC
Confidence            68999999986 5999999777665555554322      22222222333577888999888873  45699999997 


Q ss_pred             -ccCCChHHHHHHHHhcCCc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKE   98 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~   98 (380)
                       +....+.++++.++..+++
T Consensus       105 ~i~~~~i~~L~~~~~~~~~~  124 (366)
T PRK14489        105 FLPENLVKRLSKALAIEGAD  124 (366)
T ss_pred             CCCHHHHHHHHHHhhccCCe
Confidence             3444467777765554443

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=95.69  E-value=0.083  Score=44.64  Aligned_cols=83  Identities=14%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEee-cCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSH-ENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~-~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.. .+.+++|++++ .+.......     .++.  +.. .....|...+++.+...+.  .+.++++.||.
T Consensus        35 ll~~~i~~l~~-~~~~ivvv~~~-~~~~~~~~~-----~~~~--~i~~~~~~~G~~~si~~~l~~~~--~~~vlv~~~D~  103 (200)
T PRK02726         35 LLQRVARIAAA-CADEVYIITPW-PERYQSLLP-----PGCH--WLREPPPSQGPLVAFAQGLPQIK--TEWVLLLACDL  103 (200)
T ss_pred             HHHHHHHHHHh-hCCEEEEECCC-HHHHHhhcc-----CCCe--EecCCCCCCChHHHHHHHHHhCC--CCcEEEEeCCC
Confidence            68999999975 47899888764 333333221     1233  333 2334688899999999884  46799999999


Q ss_pred             --ccCCChHHHHHHHHh
Q psy9164          80 --ICDFPFKDLVSFHKN   94 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~   94 (380)
                        +....+..+++.+..
T Consensus       104 P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726        104 PRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             CCCCHHHHHHHHHHhhc
Confidence              444447777776543

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=95.21  E-value=0.42  Score=40.17  Aligned_cols=74  Identities=16%  Similarity=0.253  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+... +.+++|++++  +..    ..     ..++....+....|...++..+.....  .+.++++.||+ 
T Consensus        37 ll~~~i~~l~~~-~~~vvvv~~~--~~~----~~-----~~~~v~d~~~~~~gpl~gi~~~l~~~~--~~~vlv~~~D~P  102 (196)
T PRK00560         37 LLEYQYTRLLKL-FKKVYISTKD--KKF----EF-----NAPFLLEKESDLFSPLFGIINAFLTLQ--TPEIFFISVDTP  102 (196)
T ss_pred             HHHHHHHHHHHh-CCEEEEEECc--hhc----cc-----CCcEEecCCCCCCCcHHHHHHHHHhcC--CCeEEEEecCcC
Confidence            589999999887 8999998875  111    11     122211112233455555655554443  57799999999 


Q ss_pred             ccCCC-hHHH
Q psy9164          80 ICDFP-FKDL   88 (380)
Q Consensus        80 i~~~~-l~~~   88 (380)
                      +.+.+ ++++
T Consensus       103 ~i~~~~i~~l  112 (196)
T PRK00560        103 FVSFESIKKL  112 (196)
T ss_pred             cCCHHHHHHH
Confidence            44544 3444

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=94.78  E-value=0.26  Score=39.43  Aligned_cols=99  Identities=17%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHc--CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           2 LLHQIEALVEA--GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         2 i~~~l~~l~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      |..+|+.|.++  ...+|+|+-....+...+.+.+..+ .+..+++...++..|-+.+...+.+...  .+-++++..|.
T Consensus        13 l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~--~~~i~~ld~D~   89 (169)
T PF00535_consen   13 LERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAK--GEYILFLDDDD   89 (169)
T ss_dssp             HHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEEEEETTE
T ss_pred             HHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccc--eeEEEEeCCCc
Confidence            67888888887  4567777665544444555544222 4567777777777788888888888884  45578889999


Q ss_pred             ccCCC-hHHHHHHHHhcCCcEEEEE
Q psy9164          80 ICDFP-FKDLVSFHKNHGKEGTIVV  103 (380)
Q Consensus        80 i~~~~-l~~~l~~h~~~~~~~tl~~  103 (380)
                      +...+ +..+++.+.+.+.++.+..
T Consensus        90 ~~~~~~l~~l~~~~~~~~~~~~~~~  114 (169)
T PF00535_consen   90 IISPDWLEELVEALEKNPPDVVIGS  114 (169)
T ss_dssp             EE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred             eEcHHHHHHHHHHHHhCCCcEEEEE
Confidence            77777 7889998888766554443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=93.93  E-value=0.3  Score=42.86  Aligned_cols=177  Identities=13%  Similarity=0.153  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      ||+|+++.+.+. ++++|+|++++.. +.+++.+..    ++..+.+..  ...+-.++++.+...+.  .+..+|+.+|
T Consensus        54 ll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~i~~v~--gg~~r~~SV~~gl~~l~--~~~~~VlihD  125 (252)
T PLN02728         54 IALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVPLKFAL--PGKERQDSVFNGLQEVD--ANSELVCIHD  125 (252)
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCceEEcC--CCCchHHHHHHHHHhcc--CCCCEEEEec
Confidence            589999999985 8999999998764 444444433    233444432  22234577888888873  3344566777


Q ss_pred             c----ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCe-EEEEEEEeCHhHHhhc
Q psy9164          79 I----ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNK-INAGMYIFNPSVLDRI  153 (380)
Q Consensus        79 ~----i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~-~~~giyi~~~~~l~~l  153 (380)
                      .    +....+..+++...+.++  .+...+..+.-+    ..++++.+....+.     +.+ .----..|+.+.+...
T Consensus       126 aarP~vs~~~i~~li~~~~~~ga--~i~~~~~~dtik----~v~~~~~v~~t~~R-----~~l~~~QTPQ~F~~~~l~~a  194 (252)
T PLN02728        126 SARPLVTSADIEKVLKDAAVHGA--AVLGVPVKATIK----EANSDSFVVKTLDR-----KRLWEMQTPQVIKPELLRRG  194 (252)
T ss_pred             CcCCCCCHHHHHHHHHHHhhCCe--EEEeecchhhEE----EecCCCceeeccCh-----HHeEEEeCCccchHHHHHHH
Confidence            3    444447888887777653  344444333221    22334444322111     000 0111123344333221


Q ss_pred             ----cCCCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHH
Q psy9164         154 ----EIKPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       154 ----~~~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~  197 (380)
                          ..+... ..|-...+...+ ++...+-+..-..+.+|+|+..+..
T Consensus       195 ~~~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~  242 (252)
T PLN02728        195 FELVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAER  242 (252)
T ss_pred             HHHHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHH
Confidence                111111 123223333333 5666555556788999999876644

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=93.40  E-value=0.21  Score=47.22  Aligned_cols=81  Identities=16%  Similarity=0.350  Sum_probs=53.0

Q ss_pred             CCcEEEEeCCc-ccCCChHHHHHHHHhcCCcEEEEEEEcCC--CCceeEEEECCCC---------ceeEEEeCCCC--C-
Q psy9164          69 QEPFFVLNSDI-ICDFPFKDLVSFHKNHGKEGTIVVTQVEE--PSKYGVVLYNEHG---------CIESFIEKPQE--F-  133 (380)
Q Consensus        69 ~~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~tl~~~~~~~--~~~~g~v~~d~~~---------~v~~~~ek~~~--~-  133 (380)
                      +.-++|..+|. +...+ ...+. +.+  ..++++..+.+.  ....|+...|+++         .+..|..||..  . 
T Consensus        53 ppGv~V~s~D~vl~~~~-~~~~~-~~~--~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~  128 (414)
T PF07959_consen   53 PPGVLVCSGDMVLSVPD-DPLID-WDE--PGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR  128 (414)
T ss_pred             hcceEEEecccccccCc-cccCC-CCC--CCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH
Confidence            44689999994 33333 22222 222  456666665432  4678999999888         78888888751  1 


Q ss_pred             --------CCCeEEEEEEEeCHhHHhhc
Q psy9164         134 --------VSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus       134 --------~~~~~~~giyi~~~~~l~~l  153 (380)
                              ..-+.++|+..|+.++.+.+
T Consensus       129 ~~~av~~~~~~~ldsG~~~~s~~~~e~L  156 (414)
T PF07959_consen  129 ASGAVLPDGNVLLDSGIVFFSSKAVESL  156 (414)
T ss_pred             hCCcccCCCcccccccceeccHHHHHHH
Confidence                    12356999999999887665

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=92.26  E-value=0.77  Score=38.42  Aligned_cols=82  Identities=20%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      |++|+++.|....- .+++......++   +..     .+.++. .+.....|-...++.+....+  .+.+++++||+ 
T Consensus        31 lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~-----~g~~vv-~D~~~~~GPL~Gi~~al~~~~--~~~~~v~~~D~P   98 (192)
T COG0746          31 LIEHVIDRLRPQVD-VVVISANRNQGR---YAE-----FGLPVV-PDELPGFGPLAGILAALRHFG--TEWVLVLPCDMP   98 (192)
T ss_pred             HHHHHHHHhcccCC-EEEEeCCCchhh---hhc-----cCCcee-ecCCCCCCCHHHHHHHHHhCC--CCeEEEEecCCC
Confidence            68999999988776 566655544332   222     233432 222222288899999999995  67899999999 


Q ss_pred             ccCCC-hHHHHHHHHh
Q psy9164          80 ICDFP-FKDLVSFHKN   94 (380)
Q Consensus        80 i~~~~-l~~~l~~h~~   94 (380)
                      +...+ +..+.+...+
T Consensus        99 ~i~~~lv~~l~~~~~~  114 (192)
T COG0746          99 FIPPELVERLLSAFKQ  114 (192)
T ss_pred             CCCHHHHHHHHHhhcc
Confidence            44444 4555554443

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=91.78  E-value=1  Score=37.07  Aligned_cols=84  Identities=14%  Similarity=0.095  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhh-CCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDIL-NKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i-~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.+. ..+.+++|+++... .    +..    .++++. .......|...++..+.... ....+.++++.||+
T Consensus        17 ll~~~~~~l~-~~~~~iivv~~~~~-~----~~~----~~~~~i-~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~Dm   85 (178)
T PRK00576         17 LVEHVVGIVG-QRCAPVFVMAAPGQ-P----LPE----LPAPVL-RDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDM   85 (178)
T ss_pred             HHHHHHHHHh-hcCCEEEEECCCCc-c----ccc----CCCCEe-ccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            5899999776 56899999987542 1    111    123332 22233345555555333322 11256799999999


Q ss_pred             -ccC-CChHHHHHHHHhc
Q psy9164          80 -ICD-FPFKDLVSFHKNH   95 (380)
Q Consensus        80 -i~~-~~l~~~l~~h~~~   95 (380)
                       +.+ ..++.+++.++..
T Consensus        86 P~i~~~~i~~L~~~~~~~  103 (178)
T PRK00576         86 PYLTVELIDDLARPAAQT  103 (178)
T ss_pred             CCCCHHHHHHHHHHhhcC
Confidence             434 3367777654433

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=90.91  E-value=3.5  Score=33.64  Aligned_cols=98  Identities=9%  Similarity=0.065  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHc----CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164           2 LLHQIEALVEA----GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS   77 (380)
Q Consensus         2 i~~~l~~l~~~----gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g   77 (380)
                      |..+|+.+.+.    ...+|+|+-....+...+.+.+..... ..+.+...++..|-+.+...+.+...  .+-++++.+
T Consensus        12 l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~-~~~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~lD~   88 (185)
T cd04179          12 IPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV-PRVRVIRLSRNFGKGAAVRAGFKAAR--GDIVVTMDA   88 (185)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC-CCeEEEEccCCCCccHHHHHHHHHhc--CCEEEEEeC
Confidence            45677777777    356777776554444444443321111 23355666777788899888888873  455788899


Q ss_pred             CcccCCC-hHHHHHHHHhcCCcEEEE
Q psy9164          78 DIICDFP-FKDLVSFHKNHGKEGTIV  102 (380)
Q Consensus        78 D~i~~~~-l~~~l~~h~~~~~~~tl~  102 (380)
                      |.....+ +.++++...+.+.++.+.
T Consensus        89 D~~~~~~~l~~l~~~~~~~~~~~v~g  114 (185)
T cd04179          89 DLQHPPEDIPKLLEKLLEGGADVVIG  114 (185)
T ss_pred             CCCCCHHHHHHHHHHHhccCCcEEEE
Confidence            9866655 777887655555544433

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=90.60  E-value=4.1  Score=32.38  Aligned_cols=92  Identities=21%  Similarity=0.167  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHcC--CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           2 LLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         2 i~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      |..+|+.+.+..  ..+++|+-....+...+.+.+........+.+....+..|-+.+...+.+...  .+-++++.+|.
T Consensus        12 l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~--~~~i~~~D~D~   89 (180)
T cd06423          12 IERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK--GDIVVVLDADT   89 (180)
T ss_pred             HHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC--CCEEEEECCCC
Confidence            567788888875  45677765544444444443322222234555666777888888888888873  55578889998


Q ss_pred             ccCCC-hHHHHHHHHhc
Q psy9164          80 ICDFP-FKDLVSFHKNH   95 (380)
Q Consensus        80 i~~~~-l~~~l~~h~~~   95 (380)
                      +...+ +..++..+.+.
T Consensus        90 ~~~~~~l~~~~~~~~~~  106 (180)
T cd06423          90 ILEPDALKRLVVPFFAD  106 (180)
T ss_pred             CcChHHHHHHHHHhccC
Confidence            77666 56664555443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=89.73  E-value=3.8  Score=34.52  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=56.8

Q ss_pred             HHHHHHHHHc------CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164           3 LHQIEALVEA------GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN   76 (380)
Q Consensus         3 ~~~l~~l~~~------gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~   76 (380)
                      ...|+.+.+.      .--+++|+-....+...+.+++.....+..+.+.......|-+.++..+.....  .+-++++.
T Consensus        13 ~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~--gd~i~~ld   90 (211)
T cd04188          13 PPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR--GDYILFAD   90 (211)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc--CCEEEEEe
Confidence            4455555543      234677665443333333333211112222456666667799999998888883  45567779


Q ss_pred             CCcccCCC-hHHHHHHHHhcCCcEEE
Q psy9164          77 SDIICDFP-FKDLVSFHKNHGKEGTI  101 (380)
Q Consensus        77 gD~i~~~~-l~~~l~~h~~~~~~~tl  101 (380)
                      +|...+.+ +..+++...+.+.++.+
T Consensus        91 ~D~~~~~~~l~~l~~~~~~~~~~~v~  116 (211)
T cd04188          91 ADLATPFEELEKLEEALKTSGYDIAI  116 (211)
T ss_pred             CCCCCCHHHHHHHHHHHhccCCcEEE
Confidence            99877666 77777765555555444

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=88.94  E-value=5.8  Score=31.46  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHcC--CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           2 LLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         2 i~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      |..+|+++.+.-  ..+++|+.....+...+.+.+...    ++.+...++..|-+.++..+.+...  .+-++++..|.
T Consensus        12 l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~~--~~~i~~~D~D~   85 (166)
T cd04186          12 LKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREAK--GDYVLLLNPDT   85 (166)
T ss_pred             HHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhCC--CCEEEEECCCc
Confidence            567888888763  457777666555555555544211    4555666677888888888888883  44567778888


Q ss_pred             ccCCC-hHHHHHHHHhc
Q psy9164          80 ICDFP-FKDLVSFHKNH   95 (380)
Q Consensus        80 i~~~~-l~~~l~~h~~~   95 (380)
                      ....+ +..+++.+.+.
T Consensus        86 ~~~~~~l~~~~~~~~~~  102 (166)
T cd04186          86 VVEPGALLELLDAAEQD  102 (166)
T ss_pred             EECccHHHHHHHHHHhC
Confidence            76666 67777655544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=88.15  E-value=2.5  Score=35.99  Aligned_cols=91  Identities=16%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCC-cEEEEeCC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQE-PFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~-~~lv~~gD   78 (380)
                      ||+|+++.+.+++ +++|+|.+.  .+++.+.+.+    ++..+.....+...++......+..+..+ ++ -++.+.||
T Consensus        26 Li~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~----~g~~v~~~~~~~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d   98 (217)
T PF02348_consen   26 LIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEE----YGAKVIFRRGSLADDTDRFIEAIKHFLAD-DEDIVVRLQGD   98 (217)
T ss_dssp             HHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHH----TTSEEEE--TTSSSHHHHHHHHHHHHTCS-TTSEEEEESTT
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHH----cCCeeEEcChhhcCCcccHHHHHHHhhhh-HHhhccccCCe
Confidence            6899999999986 688776654  5566666654    34566554444444443333344444422 22 46777889


Q ss_pred             c-ccC-CChHHHHHHHHhcCCc
Q psy9164          79 I-ICD-FPFKDLVSFHKNHGKE   98 (380)
Q Consensus        79 ~-i~~-~~l~~~l~~h~~~~~~   98 (380)
                      . +.+ ..+.++++.+.+...+
T Consensus        99 ~Pll~~~~i~~~i~~~~~~~~~  120 (217)
T PF02348_consen   99 SPLLDPTSIDRAIEDIREANED  120 (217)
T ss_dssp             ETT--HHHHHHHHHHHHHSTTS
T ss_pred             eeECCHHHHHHHHHHHhcCchh
Confidence            7 333 4478889988888764

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=88.06  E-value=8.3  Score=33.29  Aligned_cols=99  Identities=14%  Similarity=0.046  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164           2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS   77 (380)
Q Consensus         2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g   77 (380)
                      |..+|+.+.++--    -+|+|+.....+...+.+.+.......++.........|-+.++..+.+...  .+-++.+.+
T Consensus        16 l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~--gd~i~~~Da   93 (241)
T cd06427          16 LPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR--GEYVVIYDA   93 (241)
T ss_pred             HHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--CCEEEEEcC
Confidence            4567777776532    2566665544444444444321112345555544455677788888887763  444677799


Q ss_pred             CcccCCC-hHHHHHHHHhcCCcEEEE
Q psy9164          78 DIICDFP-FKDLVSFHKNHGKEGTIV  102 (380)
Q Consensus        78 D~i~~~~-l~~~l~~h~~~~~~~tl~  102 (380)
                      |.....+ +.++++.+.+.+.++.++
T Consensus        94 D~~~~~~~l~~~~~~~~~~~~~v~~~  119 (241)
T cd06427          94 EDAPDPDQLKKAVAAFARLDDKLACV  119 (241)
T ss_pred             CCCCChHHHHHHHHHHHhcCCCEEEE
Confidence            9887777 678888776543444433

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=86.98  E-value=12  Score=34.12  Aligned_cols=150  Identities=18%  Similarity=0.261  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHcC------------CCEEEEEcc-CChHHHHHHHccccccCCc---EEEEeecC---------------
Q psy9164           1 MLLHQIEALVEAG------------VREVILAVS-YRAEQMEDELTVETKKLGI---SLVFSHEN---------------   49 (380)
Q Consensus         1 li~~~l~~l~~~g------------i~~i~vv~~-~~~~~i~~~l~~~~~~~~~---~i~~~~~~---------------   49 (380)
                      ++++.++++...+            + .+++.++ +..+++++++++ ...+|+   ++.+..|.               
T Consensus        48 ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~~~~~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~  125 (323)
T cd04193          48 LFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRKFFKE-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEE  125 (323)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHHHHHh-CCcCCCCCceEEEEecCceeeEcCCCccccCC
Confidence            4678888888742            4 4557777 678999999987 345555   55544331               


Q ss_pred             ------CCCCCchHHHHhH------HhhCCCCCcEEEEeCCcc-cCCChHHHHHHHHhcCCcEEEEEEEcC-CCCceeEE
Q psy9164          50 ------EPLGTAGPLALAK------DILNKSQEPFFVLNSDII-CDFPFKDLVSFHKNHGKEGTIVVTQVE-EPSKYGVV  115 (380)
Q Consensus        50 ------~~~gt~~al~~a~------~~i~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~tl~~~~~~-~~~~~g~v  115 (380)
                            .+-|.++-.....      ++.....+.+.+.+.|.+ ...---.++-.+.++++++..-+.+.. ..++-|.+
T Consensus       126 ~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l  205 (323)
T cd04193         126 KGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVV  205 (323)
T ss_pred             CCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEE
Confidence                  2446666544322      222223566788888873 333335667778888888887655544 44556666


Q ss_pred             EECCCCc--eeEEEeCCCCCC------C----CeEEEEEEEeCHhHHhhc
Q psy9164         116 LYNEHGC--IESFIEKPQEFV------S----NKINAGMYIFNPSVLDRI  153 (380)
Q Consensus       116 ~~d~~~~--v~~~~ek~~~~~------~----~~~~~giyi~~~~~l~~l  153 (380)
                      .. .+|+  ++++.|-|.+..      .    +.-+..+.+|+.+.++.+
T Consensus       206 ~~-~~g~~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~fsl~fl~~~  254 (323)
T cd04193         206 VL-VDGKPQVVEYSEISDELAEKRDADGELQYNAGNIANHFFSLDFLEKA  254 (323)
T ss_pred             EE-ECCeEEEEEeecCCHHHHhccCcCCcEecccchHhhheeCHHHHHHH
Confidence            54 2444  445544333111      1    112334556777766655

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=85.17  E-value=13  Score=30.72  Aligned_cols=90  Identities=17%  Similarity=0.164  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHcC--CCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           2 LLHQIEALVEAG--VREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         2 i~~~l~~l~~~g--i~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      |..+|+.+.++.  -.+++|+-... .+...+.+.+...+..  +.+...+...|-+.+...+.....  .+-++++.+|
T Consensus        15 l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~--gd~i~~lD~D   90 (201)
T cd04195          15 LREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT--YDWVARMDTD   90 (201)
T ss_pred             HHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC--CCEEEEeCCc
Confidence            567888888764  35666554332 3444444433222222  555555566788888888877763  4456777888


Q ss_pred             cccCCC-hHHHHHHHHhc
Q psy9164          79 IICDFP-FKDLVSFHKNH   95 (380)
Q Consensus        79 ~i~~~~-l~~~l~~h~~~   95 (380)
                      .+...+ +..+++...++
T Consensus        91 d~~~~~~l~~~~~~~~~~  108 (201)
T cd04195          91 DISLPDRFEKQLDFIEKN  108 (201)
T ss_pred             cccCcHHHHHHHHHHHhC
Confidence            876666 67777766543

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]

Probab=84.29  E-value=21  Score=29.63  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||-.++..|... +.+|.|++...+  +-.+-.        +.++..++.   -..++.++.+.+... ++++|+.+|+ 
T Consensus        33 ML~dvi~Al~~~-~~~i~Vvtpde~--~~~~a~--------~~~vl~d~d---LN~Ai~aa~~~~~~p-~~v~vvmaDLP   97 (210)
T COG1920          33 MLVDVLGALAGV-LGEITVVTPDEE--VLVPAT--------KLEVLADPD---LNTAINAALDEIPLP-SEVIVVMADLP   97 (210)
T ss_pred             HHHHHHHHhhhh-cCCceEEcCChH--hhhhcc--------cceeeeccc---hHHHHHHHHhhCCCC-cceEEEecccc
Confidence            566777777665 788888876321  111111        112222211   335677777877432 6699999998 


Q ss_pred             -ccCCChHHHHHHHHh
Q psy9164          80 -ICDFPFKDLVSFHKN   94 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~   94 (380)
                       +...+++.+++..+.
T Consensus        98 Ll~~~~i~~~~~~~~d  113 (210)
T COG1920          98 LLSPEHIERALSAAKD  113 (210)
T ss_pred             cCCHHHHHHHHHhcCC
Confidence             667778888876444

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=84.16  E-value=6  Score=36.96  Aligned_cols=80  Identities=21%  Similarity=0.306  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+.. .+.+++|+++....+  .+ ..    .++++... .....|-..++..+.....  .+.++++.||+ 
T Consensus       202 ll~~~l~~l~~-~~~~vvV~~~~~~~~--~~-~~----~~v~~i~d-~~~~~Gpl~gi~~al~~~~--~~~~lv~~~DmP  270 (369)
T PRK14490        202 QLVHTAALLRP-HCQEVFISCRAEQAE--QY-RS----FGIPLITD-SYLDIGPLGGLLSAQRHHP--DAAWLVVACDLP  270 (369)
T ss_pred             HHHHHHHHHHh-hCCEEEEEeCCchhh--HH-hh----cCCcEEeC-CCCCCCcHHHHHHHHHhCC--CCcEEEEeCCcC
Confidence            68999999986 478888877654221  11 11    24444332 2223466677777766653  56799999999 


Q ss_pred             ccC-CChHHHHHH
Q psy9164          80 ICD-FPFKDLVSF   91 (380)
Q Consensus        80 i~~-~~l~~~l~~   91 (380)
                      +.+ ..+..+++.
T Consensus       271 ~i~~~~i~~L~~~  283 (369)
T PRK14490        271 FLDEATLQQLVEG  283 (369)
T ss_pred             CCCHHHHHHHHHh
Confidence            334 335666654

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=84.14  E-value=13  Score=31.41  Aligned_cols=96  Identities=13%  Similarity=0.066  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHcC---CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           2 LLHQIEALVEAG---VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         2 i~~~l~~l~~~g---i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      |..+|+.+.+.-   --+|+||-....+...+.+.+.... .-.+.+.......|-+.++..+.....  .+-++++.+|
T Consensus        12 l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~-~~~i~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~lD~D   88 (224)
T cd06442          12 IPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKE-YPRVRLIVRPGKRGLGSAYIEGFKAAR--GDVIVVMDAD   88 (224)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHh-CCceEEEecCCCCChHHHHHHHHHHcC--CCEEEEEECC
Confidence            556677777643   3466766544333333333321111 123455556677788888888888773  4456788999


Q ss_pred             cccCCC-hHHHHHHHHhcCCcEE
Q psy9164          79 IICDFP-FKDLVSFHKNHGKEGT  100 (380)
Q Consensus        79 ~i~~~~-l~~~l~~h~~~~~~~t  100 (380)
                      ...+.+ +..+++.....+.++.
T Consensus        89 ~~~~~~~l~~l~~~~~~~~~~~v  111 (224)
T cd06442          89 LSHPPEYIPELLEAQLEGGADLV  111 (224)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCEE
Confidence            876665 6777776555554443

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=82.59  E-value=6.4  Score=36.33  Aligned_cols=81  Identities=11%  Similarity=0.128  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|... +.+++|+++...  .....     ...+++. .......|-..+++.+.....  .+.++++.||+ 
T Consensus       188 Ll~~~ie~l~~~-~~~ViVv~~~~~--~~~~~-----~~~v~~I-~D~~~~~GPlagI~aaL~~~~--~~~~lVl~cDmP  256 (346)
T PRK14500        188 HAQYLYDLLAKY-CEQVFLSARPSQ--WQGTP-----LENLPTL-PDRGESVGPISGILTALQSYP--GVNWLVVACDLA  256 (346)
T ss_pred             HHHHHHHHHHhh-CCEEEEEeCchH--hhhcc-----ccCCeEE-eCCCCCCChHHHHHHHHHhCC--CCCEEEEECCcC
Confidence            588999888764 889988875421  11110     0122332 223345688899999888764  46789999999 


Q ss_pred             ccCC-ChHHHHHHH
Q psy9164          80 ICDF-PFKDLVSFH   92 (380)
Q Consensus        80 i~~~-~l~~~l~~h   92 (380)
                      +.+. .++.+++.+
T Consensus       257 ~l~~~~l~~L~~~~  270 (346)
T PRK14500        257 YLNSETVEKLLAHY  270 (346)
T ss_pred             CCCHHHHHHHHHhh
Confidence            4443 366777755

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=82.22  E-value=13  Score=30.34  Aligned_cols=82  Identities=10%  Similarity=0.109  Sum_probs=47.9

Q ss_pred             CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHHHHH
Q psy9164          15 REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHK   93 (380)
Q Consensus        15 ~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~   93 (380)
                      -+|+|+-....+...+.+++.... ..++.+.......|.+.++..+.....  .+-++++.+|...+.+ +.++++. .
T Consensus        30 ~eiivvdd~s~d~t~~~~~~~~~~-~~~i~~i~~~~n~G~~~a~n~g~~~a~--~d~i~~~D~D~~~~~~~l~~l~~~-~  105 (181)
T cd04187          30 YEIIFVDDGSTDRTLEILRELAAR-DPRVKVIRLSRNFGQQAALLAGLDHAR--GDAVITMDADLQDPPELIPEMLAK-W  105 (181)
T ss_pred             eEEEEEeCCCCccHHHHHHHHHhh-CCCEEEEEecCCCCcHHHHHHHHHhcC--CCEEEEEeCCCCCCHHHHHHHHHH-H
Confidence            467776654433333333321111 124555555566788888888877773  4556778999877665 6777776 3


Q ss_pred             hcCCcEE
Q psy9164          94 NHGKEGT  100 (380)
Q Consensus        94 ~~~~~~t  100 (380)
                      +.+.++.
T Consensus       106 ~~~~~~v  112 (181)
T cd04187         106 EEGYDVV  112 (181)
T ss_pred             hCCCcEE
Confidence            4444433

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=81.37  E-value=19  Score=32.31  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHcc-ccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164           2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTV-ETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN   76 (380)
Q Consensus         2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~-~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~   76 (380)
                      |...|+.+.+.--    .+|+||=....+...+.+.+ ........+.+...+...|-+.+.-.+.....  .+-+++++
T Consensus        14 l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd~i~fLD   91 (299)
T cd02510          14 LLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT--GDVLVFLD   91 (299)
T ss_pred             HHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc--CCEEEEEe
Confidence            5567777776432    37877765443333332211 01112234555666667788888777777763  45578889


Q ss_pred             CCcccCCC-hHHHHHHHHhcCC
Q psy9164          77 SDIICDFP-FKDLVSFHKNHGK   97 (380)
Q Consensus        77 gD~i~~~~-l~~~l~~h~~~~~   97 (380)
                      +|...+.+ |.++++...+...
T Consensus        92 ~D~~~~~~wL~~ll~~l~~~~~  113 (299)
T cd02510          92 SHCEVNVGWLEPLLARIAENRK  113 (299)
T ss_pred             CCcccCccHHHHHHHHHHhCCC
Confidence            99977666 7888887766543

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=81.12  E-value=22  Score=30.44  Aligned_cols=95  Identities=11%  Similarity=0.104  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164           2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS   77 (380)
Q Consensus         2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g   77 (380)
                      |..+|+.+.+...    -+++|+-+...+...+.+...... ...+.+...+ ..|-+.++..+.+...  .+-++++.+
T Consensus        15 l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~~-~~~~~~a~N~g~~~a~--~d~v~~lD~   90 (249)
T cd02525          15 IEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDNP-KRIQSAGLNIGIRNSR--GDIIIRVDA   90 (249)
T ss_pred             HHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeCC-CCCchHHHHHHHHHhC--CCEEEEECC
Confidence            4567788877654    367776655444444444432111 2334444433 3455667777777763  455777889


Q ss_pred             CcccCCC-hHHHHHHHHhcCCcEE
Q psy9164          78 DIICDFP-FKDLVSFHKNHGKEGT  100 (380)
Q Consensus        78 D~i~~~~-l~~~l~~h~~~~~~~t  100 (380)
                      |.+.+.+ +.++++.+++.+..+.
T Consensus        91 D~~~~~~~l~~~~~~~~~~~~~~v  114 (249)
T cd02525          91 HAVYPKDYILELVEALKRTGADNV  114 (249)
T ss_pred             CccCCHHHHHHHHHHHhcCCCCEE
Confidence            9877666 7788876666554433

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=81.11  E-value=17  Score=31.46  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164           2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS   77 (380)
Q Consensus         2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g   77 (380)
                      |...|+.+.....    -+++|+.....+...+.+.+....   .+.+...+...|-+.++..+.....  .+-++++.+
T Consensus        44 l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~n~gi~~a~--~d~i~~lD~  118 (251)
T cd06439          44 IEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAALNRALALAT--GEIVVFTDA  118 (251)
T ss_pred             HHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHHHHHHHHcC--CCEEEEEcc
Confidence            3455666655432    257776655544555555442221   3445555666687888888888773  455788899


Q ss_pred             CcccCCC-hHHHHHHHHhc
Q psy9164          78 DIICDFP-FKDLVSFHKNH   95 (380)
Q Consensus        78 D~i~~~~-l~~~l~~h~~~   95 (380)
                      |.+...+ ++++++...+.
T Consensus       119 D~~~~~~~l~~l~~~~~~~  137 (251)
T cd06439         119 NALLDPDALRLLVRHFADP  137 (251)
T ss_pred             ccCcCHHHHHHHHHHhcCC
Confidence            9977766 67777776433

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=81.10  E-value=17  Score=29.73  Aligned_cols=88  Identities=15%  Similarity=0.093  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcCCC--EEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           2 LLHQIEALVEAGVR--EVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         2 i~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      |+.+|+.+.+....  +|+|+-....+...+.+.+....    +.+....+..|-+.+...+.+...  .+-++++.+|.
T Consensus        13 l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a~--~~~v~~ld~D~   86 (202)
T cd06433          13 LEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALAT--GDIIGFLNSDD   86 (202)
T ss_pred             HHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHcC--CCEEEEeCCCc
Confidence            56778888877655  56665444334445555442211    223334555677888888887773  44567778887


Q ss_pred             ccCCC-hHHHHHHHHhc
Q psy9164          80 ICDFP-FKDLVSFHKNH   95 (380)
Q Consensus        80 i~~~~-l~~~l~~h~~~   95 (380)
                      ....+ +..+++...+.
T Consensus        87 ~~~~~~~~~~~~~~~~~  103 (202)
T cd06433          87 TLLPGALLAVVAAFAEH  103 (202)
T ss_pred             ccCchHHHHHHHHHHhC
Confidence            55544 77777544443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=80.27  E-value=17  Score=30.03  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHcCCC--EEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           2 LLHQIEALVEAGVR--EVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         2 i~~~l~~l~~~gi~--~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      |..+|+.+.+.-..  +|+|+-... .+...+.+.+.... ...+.+...++..|-+.++..+.....  .+-++++..|
T Consensus        17 l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i~~ld~D   93 (202)
T cd04184          17 LREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELAT--GEFVALLDHD   93 (202)
T ss_pred             HHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhc--CCEEEEECCC
Confidence            45677777775433  666664432 22333333321111 123444555566677788877777762  3446777888


Q ss_pred             cccCCC-hHHHHHHH
Q psy9164          79 IICDFP-FKDLVSFH   92 (380)
Q Consensus        79 ~i~~~~-l~~~l~~h   92 (380)
                      .....+ +..+++.+
T Consensus        94 ~~~~~~~l~~~~~~~  108 (202)
T cd04184          94 DELAPHALYEVVKAL  108 (202)
T ss_pred             CcCChHHHHHHHHHH
Confidence            877766 67888776

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
2ggo_A	401	Crystal Structure Of Glucose-1-Phosphate Thymidylyl		4e-15
1tzf_A	259	X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph		2e-14
1lvw_A	295	Crystal Structure Of Glucose-1-phosphate Thymidylyl		4e-10
1mp3_A	292	L89t Variant Of S. Enterica Rmla Length = 292		2e-09
1iim_A	292	Thymidylyltransferase Complexed With Ttp Length = 2		1e-08
4aaw_A	459	S.Pneumoniae Glmu In Complex With An Antibacterial		1e-08
3pkq_A	292	Q83d Variant Of S. Enterica Rmla With Dgtp Length =		1e-08
1hm9_A	468	Crystal Structure Of S.Pneumoniae N-Acetylglucosami		2e-08
3pkp_A	292	Q83s Variant Of S. Enterica Rmla With Datp Length =		2e-08
1g95_A	459	Crystal Structure Of S.Pneumoniae Glmu, Apo Form Le		3e-08
1mp5_A	292	Y177f Variant Of S. Enterica Rmla Length = 292		4e-08
1h5t_A	293	Thymidylyltransferase Complexed With Thymidylyldiph		7e-08
1h5s_D	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-07
4b2x_A	303	Pseudomonas Aeruginosa Rmla In Complex With Alloste		1e-07
1h5s_A	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-07
4arw_A	302	Pseudomonas Aeruginosa Rmla In Complex With Alloste		1e-07
1fxo_A	293	The Structural Basis Of The Catalytic Mechanism And		1e-07
1mp4_A	292	W224h Variant Of S. Enterica Rmla Length = 292		2e-07
1h5r_B	293	Thymidylyltransferase Complexed With Thimidine And		2e-07
3foq_A	503	Crystal Structure Of N-Acetylglucosamine-1-Phosphat		4e-07
3spt_A	501	Crystal Structure Of Glmu From Mycobacterium Tuberc		4e-07
3d8v_A	495	Crystal Structure Of Glmu From Mycobacterium Tuberc		4e-07
1mc3_A	296	Crystal Structure Of Rffh Length = 296		6e-07
1g23_A	293	The Structural Basis Of The Catalytic Mechanism And		9e-07
3hl3_A	269	2.76 Angstrom Crystal Structure Of A Putative Gluco		1e-06
2qkx_A	391	N-Acetyl Glucosamine 1-Phosphate Uridyltransferase		3e-06

>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 47/314 (14%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ++ +QIE L + G+R++ + VS + ++       E K   IS+V + +++  GT   +  
Sbjct: 33  LIEYQIEYLRKCGIRDITVIVSSKNKEY-----FEKKLKEISIV-TQKDDIKGTGAAILS 86
Query: 61  AKDILNKSQ----EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVL 116
           AK   N          F  N   IC+     +++      KE  I+  +V  P  YGV++
Sbjct: 87  AK--FNDEALIIYGDLFFSNEKEICN-----IITL-----KENAIIGVKVSNPKDYGVLV 134
Query: 117 YNEHGCIESFIEKPQEFVSNKINAGMYIFNPSV---LDRIEIKPTSIEKEI---FPLMSK 170
            +    +   IEKP+   SN INAG+Y  N  +   LD+I I     E E+     LM+K
Sbjct: 135 LDNQNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERG-ELELTDAINLMAK 193
Query: 171 EKQLYAMELKGFWMDVGQPRD-------------FLKGMCLYLNSLRQKRPKLLKEGDGI 217
           + ++  +E +G+WMD+G+P +             F + +    ++++ K   +++E   I
Sbjct: 194 DHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEI 253
Query: 218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW 277
                ++    IG G  IGPN  + P  ++     ++++ I     VK    +EG  I  
Sbjct: 254 KSGTYIEGPVYIGKGSEIGPNSYLRPYTIL-----VEKNKIGASVEVKESVIMEGSKIPH 308
Query: 278 KCVVGQWVRMENIT 291
              VG  V  E++ 
Sbjct: 309 LSYVGDSVIAEDVN 322

>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 67  KSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESF 126
           K  E F     D + D   K  + FHK HGK+ T+  T    P ++G  L  + G + SF
Sbjct: 120 KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGA-LDIQAGQVRSF 176
Query: 127 IEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDV 186
            EKP+      IN G ++ NPSV+D I+   T+ E+E    ++++ +L A E  GFW   
Sbjct: 177 QEKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFW--- 232
Query: 187 GQPRDFLKGMCLYLNSLRQK 206
            QP D L+   +YL  L +K
Sbjct: 233 -QPMDTLRDK-VYLEGLWEK 250

>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 12/196 (6%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + R   +  +L  +  + G+   +  + EP G A    +
Sbjct: 36  MIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIV 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            KD +  S+    VL  ++     F +++    +      I    V +P  +GVV ++  
Sbjct: 96  GKDFIGDSKVAL-VLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVL---------DRIEIKPTSIEKEIFPLMSKE 171
           G + S  EKP    SN +  G+Y ++  V+         DR E++ TS+ +E   +    
Sbjct: 155 GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLR 214
Query: 172 KQLYAMELKGFWMDVG 187
            +L    +   W+D G
Sbjct: 215 VELMGRGMA--WLDTG 228

>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 8/202 (3%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P GTA    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGTAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV +++ 
Sbjct: 96  GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQA 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP +  SN    G+Y ++ SV++  + +KP++  E EI  +    M + +  
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
            AM  +G+ W+D G  +  ++ 
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236

>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV +++ 
Sbjct: 96  GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQK 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP +  SN    G+Y ++ SV++  + +KP++  E EI  +    M + +  
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
            AM  +G+ W+D G  +  ++ 
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236

>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial Inhibitor Length = 459

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 46/351 (13%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H   ++      + +  V ++AE +E+ L  +T+       F  ++E LGT   + +
Sbjct: 32  MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAEQTE-------FVTQSEQLGTGHAVMM 84
Query: 61  AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
            + IL        V+  D  +I     K+L+ FH NH    TI+  + + P  YG ++ N
Sbjct: 85  TEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRN 144
Query: 119 EHGCIESFIEKPQ----EFVSNKINAGMYIF-NPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
           ++  +   +E+      E    +IN G Y+F N  + + ++   T+         + + +
Sbjct: 145 DNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN---------NAQGE 195
Query: 174 LYAMELKGFWMDVGQP------RDFLKGMC----LYLNSLRQKRPKLLKEGDGIVGNVLV 223
            Y  ++ G + + G+       +DF + +     + L +      + +     + G   V
Sbjct: 196 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFV 255
Query: 224 DPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
           +P AT I     I P V I   V+++G   I   T+L +      +++    IG   V+ 
Sbjct: 256 NPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNG-----TYVVDSTIGAGAVIT 310
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV 333
                   +++ E  +     VG +  +   + LG  V + + + V G  +
Sbjct: 311 N-------SMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSI 354

>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVDPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV +++ 
Sbjct: 96  GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQK 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP +  SN    G+Y ++ SV++  + +KP++  E EI  +    M + +  
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
            AM  +G+ W+D G  +  ++ 
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236

>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu, Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine Length = 468

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 46/351 (13%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H   ++      + +  V ++AE +E+ L  +T+       F  ++E LGT   + +
Sbjct: 41  MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTE-------FVTQSEQLGTGHAVMM 93
Query: 61  AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
            + IL        V+  D  +I     K+L+ FH NH    TI+  + + P  YG ++ N
Sbjct: 94  TEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRN 153
Query: 119 EHGCIESFIEKPQ----EFVSNKINAGMYIF-NPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
           ++  +   +E+      E    +IN G Y+F N  + + ++   T+         + + +
Sbjct: 154 DNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN---------NAQGE 204
Query: 174 LYAMELKGFWMDVGQP------RDFLKGMC----LYLNSLRQKRPKLLKEGDGIVGNVLV 223
            Y  ++ G + + G+       +DF + +     + L +      + +     + G   V
Sbjct: 205 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFV 264
Query: 224 DPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
           +P AT I     I P V I   V+++G   I   T+L +      +++    IG   V+ 
Sbjct: 265 NPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNG-----TYVVDSTIGAGAVIT 319
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV 333
                   +++ E  +     VG +  +   + LG  V + + + V G  +
Sbjct: 320 N-------SMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSI 363

>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 95/202 (47%), Gaps = 8/202 (3%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +     P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV +++ 
Sbjct: 96  GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQK 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP +  SN    G+Y ++ SV++  + +KP++  E EI  +    M + +  
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
            AM  +G+ W+D G  +  ++ 
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236

>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form Length = 459

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 136/324 (41%), Gaps = 47/324 (14%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H   ++      + +  V ++AE +E+ L  +T+       F  ++E LGT   + +
Sbjct: 32  MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTE-------FVTQSEQLGTGHAVMM 84
Query: 61  AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
            + IL        V+  D  +I     K+L+ FH NH    TI+  + + P  YG ++ N
Sbjct: 85  TEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRN 144
Query: 119 EHGCIESFIEKPQ----EFVSNKINAGMYIF-NPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
           ++  +   +E+      E    +IN G Y+F N  + + ++   T+         + + +
Sbjct: 145 DNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN---------NAQGE 195
Query: 174 LYAMELKGFWMDVGQP------RDFLKGMC----LYLNSLRQKRPKLLKEGDGIVGNVLV 223
            Y  ++ G + + G+       +DF + +     + L +      + +     + G   V
Sbjct: 196 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFV 255
Query: 224 DPTAT-------IGPGCRIGPNVT------IGPGVVIEGGVCIKRSTILRDAIVKSHSWL 270
           +P AT       I    +I  NVT      IG   V+  G  +  STI   A++ ++S +
Sbjct: 256 NPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMI 314
Query: 271 EGCIIGWKCVVGQWVRMENITVLG 294
           E   +    +VG +  +   + LG
Sbjct: 315 EESSVADGVIVGPYAHIRPNSSLG 338

>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV +++ 
Sbjct: 96  GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQA 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP +  SN    G++ ++ SV++  + +KP++  E EI  +    M + +  
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLFFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
            AM  +G+ W+D G  +  ++ 
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236

>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV ++++
Sbjct: 96  GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP E  SN    G+Y ++  V+   + +KP++  E EI  +    + + +  
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
            AM  +G+ W+D G
Sbjct: 215 VAMMGRGYAWLDTG 228

>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 93/194 (47%), Gaps = 8/194 (4%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +  + +   VL  +I        L+    N     T+    V +P +YGVV ++++
Sbjct: 96  GEEFIG-ADDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP E  SN    G+Y ++  V+   + +KP++  E EI  +    + + +  
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
            A+  +G+ W+D G
Sbjct: 215 VALMGRGYAWLDTG 228

>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+RE+++  + +      +L  +    G+ L ++ +  P G A    +
Sbjct: 45  MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 104
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            +  +        VL  ++     F +L+          ++    V +P +YGVV +++ 
Sbjct: 105 GESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 163
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RIEIKPT 158
           G   S  EKP E  SN    G+Y ++  V+D   ++KP+
Sbjct: 164 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPS 202

>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV ++++
Sbjct: 96  GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIF-NPSVLDRIEIKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP E  SN    G+Y + N  VL    +KP++  E EI  +    + + +  
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVLMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
            A+  +G+ W+D G
Sbjct: 215 VALMGRGYAWLDTG 228

>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+RE+++  + +      +L  +    G+ L ++ +  P G A    +
Sbjct: 44  MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 103
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            +  +        VL  ++     F +L+          ++    V +P +YGVV +++ 
Sbjct: 104 GESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 162
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RIEIKPT 158
           G   S  EKP E  SN    G+Y ++  V+D   ++KP+
Sbjct: 163 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPS 201

>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+RE+++  + +      +L  +    G+ L ++ +  P G A    +
Sbjct: 35  MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 94
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            +  +        VL  ++     F +L+          ++    V +P +YGVV +++ 
Sbjct: 95  GESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 153
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RIEIKPT 158
           G   S  EKP E  SN    G+Y ++  V+D   ++KP+
Sbjct: 154 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPS 192

>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV +++ 
Sbjct: 96  GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQA 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTS 159
           G   S  EKP +  SN    G+Y ++ SV++  + +KP++
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSA 194

>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + +      +L  +  + G++L +  +  P G A    +
Sbjct: 36  MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            ++ +    +   VL  +I        L+    N     T+    V +P +YGVV ++++
Sbjct: 96  GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
           G   S  EKP E  SN    G+Y ++  V+   + +KP++  E EI  +    + + +  
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
            A+  +G+ W+D G
Sbjct: 215 VALMGRGYAWLDTG 228

>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 59/379 (15%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
           ML H + A+ +   + +I+ + +  +++   +      LG ++  + ++ PLGT      
Sbjct: 44  MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 103
Query: 56  GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
           G  AL  D     ++     P   L++D + D     L++ H+      T++ T +++P 
Sbjct: 104 GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 156
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
            YG +L  +   + + +E+    P +    ++NAG+Y F+ + L      +   + ++E+
Sbjct: 157 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 216
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
           +       L S  + ++A  +    +  G   R  L  +   LN       + +     +
Sbjct: 217 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 269
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
            G  +VDP  T I     IG +  I PG  +      GG C +   T L D       ++
Sbjct: 270 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 329
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
           V++H       IG    VG +  +   T LG         +G +V ++N T+ G    V 
Sbjct: 330 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI-GTGTKVP 381
Query: 324 DELYVNGGQVLPHKSIGSS 342
              YV    +  + +IG+S
Sbjct: 382 HLTYVGDADIGEYSNIGAS 400

>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 59/379 (15%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
           ML H + A+ +   + +I+ + +  +++   +      LG ++  + ++ PLGT      
Sbjct: 42  MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 101
Query: 56  GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
           G  AL  D     ++     P   L++D + D     L++ H+      T++ T +++P 
Sbjct: 102 GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 154
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
            YG +L  +   + + +E+    P +    ++NAG+Y F+ + L      +   + ++E+
Sbjct: 155 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 214
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
           +       L S  + ++A  +    +  G   R  L  +   LN       + +     +
Sbjct: 215 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 267
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
            G  +VDP  T I     IG +  I PG  +      GG C +   T L D       ++
Sbjct: 268 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 327
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
           V++H       IG    VG +  +   T LG         +G +V ++N T+ G    V 
Sbjct: 328 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI-GTGTKVP 379
Query: 324 DELYVNGGQVLPHKSIGSS 342
              YV    +  + +IG+S
Sbjct: 380 HLTYVGDADIGEYSNIGAS 398

>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 59/379 (15%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
           ML H + A+ +   + +I+ + +  +++   +      LG ++  + ++ PLGT      
Sbjct: 36  MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 95
Query: 56  GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
           G  AL  D     ++     P   L++D + D     L++ H+      T++ T +++P 
Sbjct: 96  GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 148
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
            YG +L  +   + + +E+    P +    ++NAG+Y F+ + L      +   + ++E+
Sbjct: 149 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 208
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
           +       L S  + ++A  +    +  G   R  L  +   LN       + +     +
Sbjct: 209 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 261
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
            G  +VDP  T I     IG +  I PG  +      GG C +   T L D       ++
Sbjct: 262 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 321
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
           V++H       IG    VG +  +   T LG         +G +V ++N T+ G    V 
Sbjct: 322 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI-GTGTKVP 373
Query: 324 DELYVNGGQVLPHKSIGSS 342
              YV    +  + +IG+S
Sbjct: 374 HLTYVGDADIGEYSNIGAS 392

>pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 14/196 (7%)
Query: 2   LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALA 61
           + + +  L  AG+RE+++  +   +     L  +  + GI L ++ +  P G A    + 
Sbjct: 37  IYYPLSVLXLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIG 96
Query: 62  KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
           +  LN  +    VL  +I     F   +       +  T+   QV +P ++GVV ++++ 
Sbjct: 97  ETFLN-GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVXDPERFGVVEFDDNF 155
Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVL---------DRIEIKPTSIEKEIFPLMSKEK 172
              S  EKP++  SN    G+Y ++  V+         +R E++ TSI +      +   
Sbjct: 156 RAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQXYLEAGNLTV 215
Query: 173 QLYAMELKGF-WMDVG 187
           +L     +GF W+D G
Sbjct: 216 ELLG---RGFAWLDTG 228

>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 18/198 (9%)
Query: 2   LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALA 61
           + + +  L  AG+RE+++  + +      +L  +    G+ L ++ +  P G A    + 
Sbjct: 36  IYYPLSTLXLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIG 95
Query: 62  KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
           +  +        VL  ++     F +L+          ++    V +P +YGVV +++ G
Sbjct: 96  ESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGG 154
Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVLD---------RIEIKPTSIEKEIFPLMSKEK 172
              S  EKP E  SN    G+Y ++  V+D         R E++ T + +        E+
Sbjct: 155 KAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYL-----ER 209
Query: 173 QLYAMELKG---FWMDVG 187
              ++E+ G    W+D G
Sbjct: 210 GQLSVEIXGRGYAWLDTG 227

>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTV--ETKKLGISLVFSHENEPLGTAGPL 58
           M+ H +  L +  + ++++      E M D ++     ++ G+S  +  +++  G A  L
Sbjct: 57  MIYHAVYKLKQCDITDIMIITG--KEHMGDVVSFLGSGQEFGVSFTYRVQDKAGGIAQAL 114
Query: 59  ALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
            L +D +   +    +L  +I  D   +  V    N  +   +++  V++P ++GV    
Sbjct: 115 GLCEDFVGNDR-MVVILGDNIFSD-DIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ 172
Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKPTSI-EKEIFPLMS---KEKQ 173
               IE   EKP+E  S+    G+Y+++  V   I E+KP++  E EI  + +   K   
Sbjct: 173 NRKIIE-IEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGV 231
Query: 174 LYAMELKGFWMDVG 187
           L   E+ G+W D G
Sbjct: 232 LTYNEMSGWWTDAG 245

>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 146/352 (41%), Gaps = 58/352 (16%)
Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
           ML H + A+ +   + +I+ + +  +++   +      LG ++  + ++ PLGT      
Sbjct: 38  MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 97
Query: 56  GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
           G  AL  D     ++     P   L++D + D     L++ H+      T++ T +++P 
Sbjct: 98  GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 150
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
            YG +L  +   + + +E+    P +    ++NAG+Y F+ + L      +   + ++E+
Sbjct: 151 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 210
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
           +       L S  + ++A  +    +  G   R  L  +   LN       + +     +
Sbjct: 211 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 263
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
            G  +VDP  T I     IG +  I PG  +      GG C +   T L D       ++
Sbjct: 264 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 323
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITV 315
           V++H       IG    VG +  +   T LG         +G +V ++N T+
Sbjct: 324 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI 368

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	1e-47
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	9e-47
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-46
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	5e-32
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	3e-25
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	1e-23
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	2e-23
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	3e-20
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	6e-20
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	2e-19
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	3e-16
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	3e-13
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-04
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-10
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	7e-10
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-10
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	1e-09
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	6e-10
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	2e-09
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	2e-08
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	3e-08
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	9e-08
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	6e-07
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	1e-07
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	2e-07
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	8e-07
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	1e-05
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	3e-07
3pnn_A	303	Conserved domain protein; structural genomics, PSI	4e-07
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	6e-07
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	3e-06
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	2e-04
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	6e-04
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-06
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	3e-06
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	3e-06
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	9e-05
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-06
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	9e-05
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-06
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-04
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	6e-06
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	4e-05
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	1e-04
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	4e-04
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	4e-04
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	9e-04

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score =  160 bits (408), Expect = 1e-47
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ++L  ++ L    V E I+  S  A+ ++  L  + K     +V     E  G    L +
Sbjct: 47  IILRTMKLL-SPHVSEFIIVASRYADDIDAFL--KDKGFNYKIVRHDRPE-KGNGYSLLV 102

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
           AK+ +    + F +   D +        +               +  +  +   +   + 
Sbjct: 103 AKNHVE---DRFILTMGDHVYSQ---QFIEKAVRGEGVIADREPRFVDIGEATKIRVED- 155

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL- 179
           G +    +  +E   + ++ G ++ + S+ +  E K    E+     + K  +L    + 
Sbjct: 156 GRVAKIGKDLRE--FDCVDTGFFVLDDSIFEHAE-KLRDREEIPLSEIVKLARLPVTYVD 212

Query: 180 KGFWMDVGQPRDFLK 194
              WMDV    D  +
Sbjct: 213 GELWMDVDTKEDVRR 227

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score =  159 bits (403), Expect = 9e-47
 Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 28/205 (13%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ++ +QIE L E G+ ++I+ V Y  EQ +       +K G+ LVF+ +         L L
Sbjct: 58  LIEYQIEFLKEKGINDIIIIVGYLKEQFDYLK----EKYGVRLVFNDKYADYNNFYSLYL 113

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            K+ L      + +   + +         +  +N     T      E+ +    ++Y + 
Sbjct: 114 VKEELA---NSYVIDADNYLFK-------NMFRNDLTRSTYFSVYREDCTNEWFLVYGDD 163

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI----------EIKPTSIEKEIFPLMSK 170
             ++  I   +   + +I +G+  ++    ++I                    +     K
Sbjct: 164 YKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIK 220

Query: 171 EKQLYAMELKG-FWMDVGQPRDFLK 194
           E  +Y  EL+G    ++   +D+ K
Sbjct: 221 ELDVYVEELEGNSIYEIDSVQDYRK 245

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score =  163 bits (414), Expect = 1e-46
 Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 45/350 (12%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPL-GTAGPLA 59
           ++ +QIE L + G+R++ + VS + ++         +K    +    + + + GT   + 
Sbjct: 33  LIEYQIEYLRKCGIRDITVIVSSKNKEYF-------EKKLKEISIVTQKDDIKGTGAAIL 85

Query: 60  LAKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
            AK       +   ++  D+         ++++  +N      I+  +V  P  YGV++ 
Sbjct: 86  SAKF-----NDEALIIYGDLFFSNEKEICNIITLKEN-----AIIGVKVSNPKDYGVLVL 135

Query: 118 NEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKE-----IFPLMSKEK 172
           +    +   IEKP+   SN INAG+Y  N  +   ++    S   E        LM+K+ 
Sbjct: 136 DNQNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELELTDAINLMAKDH 195

Query: 173 QLYAMELKGFWMDVGQPRDFLKGMCLYL-NSLRQKRPKLLKEGDGIVGNVLVDPTATIGP 231
           ++  +E +G+WMD+G+P + +      L N +  +    +++   I G V+++  A I  
Sbjct: 196 RVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKS 255

Query: 232 GCR------IGPNVTIGPGVVIEGG------------VCIKRSTILRDAIVKSHSWLEGC 273
           G        IG    IGP   +               V +K S I+  + +   S++   
Sbjct: 256 GTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDS 315

Query: 274 IIGWKCVVGQWVRMEN-ITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322
           +I      G    + N      E  +  K       R +    +G  V  
Sbjct: 316 VIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRT 365

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259

 Score =  120 bits (303), Expect = 5e-32
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 27/218 (12%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMED----------ELTV----------ETKKLG 40
           +L H ++     G+++ I+   Y+   +++          ++T             +   
Sbjct: 35  ILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEP 94

Query: 41  ISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGT 100
            ++      +   T G L    + + K  E F     D + D   K  + FHK HGK+ T
Sbjct: 95  WNVTLVDTGDSSMTGGRLKRVAEYV-KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKAT 153

Query: 101 IVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI 160
           +  T    P ++G  L  + G + SF EKP+      IN G ++ NPSV+D I+   T+ 
Sbjct: 154 L--TATFPPGRFGA-LDIQAGQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTW 209

Query: 161 EKEIFPLMSKEKQLYAMELKGFW--MDVGQPRDFLKGM 196
           E+E    ++++ +L A E  GFW  MD  + + +L+G+
Sbjct: 210 EQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGL 247

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score =  100 bits (250), Expect = 3e-25
 Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 20/156 (12%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ++ + +  L+++ V  + +A S    + ++ +   +       +   +    G    L  
Sbjct: 29  LIDYVVSPLLKSKVNNIFIATSPNTPKTKEYI--NSAYKDYKNIVVIDTSGKGYIEDLNE 86

Query: 61  AKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
                +   EPF V++SD+I         +V +      +   V           V++  
Sbjct: 87  CIGYFS---EPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEA-------LAVMIPK 136

Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE 154
           E          P    +  + A + + +P    + E
Sbjct: 137 E------KYPNPSIDFNGLVPADINVVSPKHGYQKE 166

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score =  101 bits (253), Expect = 1e-23
 Identities = 70/351 (19%), Positives = 128/351 (36%), Gaps = 72/351 (20%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H   ++      + +  V ++AE +E+ L            F  ++E LGT   + +
Sbjct: 41  MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVL-------AGQTEFVTQSEQLGTGHAVMM 93

Query: 61  AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
            + IL        V+  D     P       K+L+ FH NH    TI+  + + P  YG 
Sbjct: 94  TEPILEGLSGHTLVIAGDT----PLITGESLKNLIDFHINHKNVATILTAETDNPFGYGR 149

Query: 115 VLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
           ++ N++  +   +E       E    +IN G Y+F+   L      I   + + E     
Sbjct: 150 IVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITD 209

Query: 164 IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKLL 211
           +  +  +  +++ A  LK F   +G            +N                  K +
Sbjct: 210 VIGIFRETGEKVGAYTLKDFDESLG------------VNDRVALATAESVMRRRINHKHM 257

Query: 212 KEGDGIVGNV-LVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
             G      V  V+P AT I     I P V I   V+++G        I  + ++ + ++
Sbjct: 258 VNG------VSFVNPEATYIDIDVEIAPEVQIEANVILKGQT-----KIGAETVLTNGTY 306

Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
           +    IG   V+         +++ E  +     VG +  +   + LG  V
Sbjct: 307 VVDSTIGAGAVITN-------SMIEESSVADGVTVGPYAHIRPNSSLGAQV 350

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score =  100 bits (251), Expect = 2e-23
 Identities = 63/351 (17%), Positives = 125/351 (35%), Gaps = 64/351 (18%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ML H + A+ +   + +I+ + +  +++   +      LG ++  + ++ PLGT   +  
Sbjct: 42  MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 101

Query: 61  AKDILNKSQE-PFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYG 113
               L         V + D     P        DL++ H+      T++ T +++P  YG
Sbjct: 102 GLSALPDDYAGNVVVTSGDT----PLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYG 157

Query: 114 VVLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE---- 163
            +L  +   + + +E     P +    ++NAG+Y F+ + L      +   + ++E    
Sbjct: 158 RILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLT 217

Query: 164 -IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKL 210
            +  ++  + + ++A  +    +  G            +N+  Q                
Sbjct: 218 DVIAILRSDGQTVHASHVDDSALVAG------------VNNRVQLAELASELNRRVVAAH 265

Query: 211 LKEGDGIVGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
              G  +V     DP  T I     IG +  I PG  + G        I    +V   + 
Sbjct: 266 QLAGVTVV-----DPATTWIDVDVTIGRDTVIHPGTQLLGRT-----QIGGRCVVGPDTT 315

Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
           L    +G    V +       T      IG    VG +  +   T LG D 
Sbjct: 316 LTDVAVGDGASVVR-------THGSSSSIGDGAAVGPFTYLRPGTALGADG 359

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 91.0 bits (227), Expect = 3e-20
 Identities = 71/355 (20%), Positives = 126/355 (35%), Gaps = 69/355 (19%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ H I+A ++ G + V L   +  E ++  L         SL +  + E LGT   +  
Sbjct: 38  MVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLA------DPSLNWVLQAEQLGTGHAMQQ 91

Query: 61  AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
           A        E   +L  D+    P       + L++     G    ++  +++ PS YG 
Sbjct: 92  AAPHF-ADDEDILMLYGDV----PLISVDTLQRLLAAKPEGG--IGLLTVKLDNPSGYGR 144

Query: 115 VLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
           ++    G +   +E       +   N+IN G+ + N   L R    +   + + E     
Sbjct: 145 IVREN-GDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITD 203

Query: 164 IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKLL 211
           I  L   + K++  +         G            +N+  Q           +  KLL
Sbjct: 204 IIALAHADGKKIATVHPTRLSEVEG------------VNNRLQLSALERVFQTEQAEKLL 251

Query: 212 KEGDGIV--GNVLVDPTATIGPGCRIGPNV------TIGPGVVIEGGVCIKRSTILRDAI 263
             G  ++      +    T G    I  NV       +G  V I  G  +K   I  D+ 
Sbjct: 252 LAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSE 311

Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
           +  ++ LE   +   C VG + R+     L E        VG +V ++    LG+
Sbjct: 312 ISPYTVLEDARLDANCTVGPFARLRPGAELAE-----GAHVGNFVEIKK-ARLGK 360

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 89.9 bits (224), Expect = 6e-20
 Identities = 67/355 (18%), Positives = 127/355 (35%), Gaps = 69/355 (19%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ H I+   + G   + L   +  + M   L          + +  + E LGTA  +  
Sbjct: 35  MVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLA------NEQVNWVLQTEQLGTAHAVQQ 88

Query: 61  AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
           A     K  E   VL  D     P       + L+     +G    ++   ++ P+ YG 
Sbjct: 89  AAPFF-KDNENIVVLYGDA----PLITKETLEKLIEAKPENG--IALLTVNLDNPTGYGR 141

Query: 115 VLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
           ++    G + + +E      ++    ++N G+ + + +   +    +   + + E     
Sbjct: 142 IIREN-GNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTD 200

Query: 164 IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKLL 211
           +  L +++  Q+ A++        G             N+  Q           +  KLL
Sbjct: 201 LIALANQDNCQVVAVQATDVMEVEG------------ANNRLQLAALERYFQNKQASKLL 248

Query: 212 KEGDGIV--GNVLVDPTATIGPGCRIGPNV------TIGPGVVIEGGVCIKRSTILRDAI 263
            EG  I       +  T   G    I  NV       +G  V I  G  +K   I  D  
Sbjct: 249 LEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVE 308

Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
           +K +S LE  I+G K  +G + R+     L       +  VG +V ++  + +G+
Sbjct: 309 IKPYSVLEDSIVGEKAAIGPFSRLRPGAELAA-----ETHVGNFVEIKK-STVGK 357

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 88.4 bits (220), Expect = 2e-19
 Identities = 55/298 (18%), Positives = 103/298 (34%), Gaps = 75/298 (25%)

Query: 85  FKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA-- 140
           ++ ++  H + G + TI   +V   E + +GV+  NE   I  FIEKP +      N   
Sbjct: 142 YEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPPGIPGNEGF 201

Query: 141 -----GMYIFNPSVL----DRIEIKPTSIE---KEIFPLMSKEKQLYA-----------M 177
                G+Y+F+   L     R    PTS     K+I P + +  +  A            
Sbjct: 202 ALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDF 261

Query: 178 ELKGFWMDVG---------------QPRDFLKGMCLY------LNSLRQKRP-KLLKEGD 215
           E + +W DVG                P      + +Y              P K + + +
Sbjct: 262 EHEPYWRDVGTIDAYWQANIDLTDVVPD-----LDIYDKSWPIWTYAEITPPAKFVHDDE 316

Query: 216 GIVGNVLVDPTATIGPGCRI-GPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
              G+ +   ++ +   C I G  +    +  GV       ++ + +L    +  H+ L 
Sbjct: 317 DRRGSAV---SSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLS 373

Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVV---GQWVRMENITVLGEDVIVQDEL 326
             +I    V+      E        I+G    +           I ++ + +I + +L
Sbjct: 374 NVVIDHGVVIP-----EG------LIVGEDPELDAKRFRRTESGICLITQSMIDKLDL 420

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 48/300 (16%), Positives = 100/300 (33%), Gaps = 67/300 (22%)

Query: 85  FKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA-- 140
           ++  +  H+    + T+    +  +  + +G++  +E G I  F EKPQ      +    
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDT 211

Query: 141 -------------------GMYIFNPSVL-DRIEIKPTSIE---KEIFPLM-SKEKQLYA 176
                              G+Y+ +  V+ + +  K         E+ P   S   ++ A
Sbjct: 212 TILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQA 271

Query: 177 MELKGFWMDVGQPR-------DFLKGMCLYLNSLRQK-----RPKLL---KEGDGIVGNV 221
               G+W D+G             K      +   +      +P+ L   K  D  V + 
Sbjct: 272 YLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDS 331

Query: 222 LVDPTATIGPGCRI-GPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW 277
           +      IG GC I    +    +G    I  G  I+ S ++     ++ +  +      
Sbjct: 332 V------IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKG 385

Query: 278 K--CVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335
                +G+   ++        II     +G     +N+ ++ +D  VQ+      G  + 
Sbjct: 386 SVPIGIGKNCHIKR------AIIDKNARIG-----DNVKIINKDN-VQEAARETDGYFIK 433

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 21/131 (16%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR---------------DAIV 264
           NV ++    I  GC I  NV I  G  I     +    +                 +A++
Sbjct: 20  NVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALI 79

Query: 265 KSHSWL-EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
           ++ + +    IIG     G  V     T+     IG    +G    +++   +G  V + 
Sbjct: 80  RTENVIYGDTIIGDNFQTGHKV-----TIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIH 134

Query: 324 DELYVNGGQVL 334
             ++V    ++
Sbjct: 135 SNVFVGEKSII 145

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 233 CRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRM--- 287
             I  +  I  GV+I   V I     I    I++ +  + +G  IG + ++G+++     
Sbjct: 3   NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYN 62

Query: 288 ENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
           + I      IIG   ++     +   T++G++     ++ +   
Sbjct: 63  DRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIREN 106

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 36/125 (28%)

Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
           GI    +V   A + P   +G    I  G  I  GV I                   C+I
Sbjct: 121 GIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSI----------------GAHCVI 164

Query: 276 GWKCVVGQWVRME-NITVLGECIIGWKCVV-----------------GQWVRMENI--TV 315
           G + V+G+   +   +T+  +  IG +  +                 G W ++  I    
Sbjct: 165 GARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVT 224

Query: 316 LGEDV 320
           +G+DV
Sbjct: 225 IGDDV 229

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 27/101 (26%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
           + PTA +     + P+ ++G   VIE G  I                  G  IG  CV+G
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIG----------------AGVSIGAHCVIG 165

Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
                         +IG    +   V + +   +G  V +Q
Sbjct: 166 A-----------RSVIGEGGWLAPRVTLYHDVTIGARVSIQ 195

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 37/126 (29%)

Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
           GI    ++ PTA I     I P   +     +     I                  G +I
Sbjct: 126 GIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHI----------------GSGSVI 169

Query: 276 GWKCVVGQWVRME-NITVLGECIIGWKCVV------------------GQWVRMENI--T 314
           G    VG+   +   + +     IG + ++                  GQ   ++++   
Sbjct: 170 GAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKV 229

Query: 315 VLGEDV 320
           ++ +DV
Sbjct: 230 IIEDDV 235

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 27/101 (26%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
           + PTA I P   I  +V I P  V+     +                   C IG   V+G
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVG----------------SACHIGSGSVIG 170

Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
                          +G    +   V +     +G+ VI+Q
Sbjct: 171 A-----------YSTVGEHSYIHPRVVIRERVSIGKRVIIQ 200

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 36/125 (28%)

Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
            I  + ++D TA +G    IG N  I  GV +   V I                  GC +
Sbjct: 99  NIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVII----------------GAGCFV 142

Query: 276 GWKCVVGQWVRME-NITVLGECIIGWKCVV-----------------GQWVRMENI--TV 315
           G    +G   R+  N+T+  E  IG  C++                 G WV++  I   +
Sbjct: 143 GKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVI 202

Query: 316 LGEDV 320
           +G+ V
Sbjct: 203 IGDRV 207

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 27/101 (26%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
           + P+A I    ++G NV+IG   VIE GV +                 +  IIG  C VG
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELG----------------DNVIIGAGCFVG 143

Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
           +              IG    +   V + +   +G++ ++Q
Sbjct: 144 K-----------NSKIGAGSRLWANVTIYHEIQIGQNCLIQ 173

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 22/207 (10%), Positives = 55/207 (26%), Gaps = 15/207 (7%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +  H + +          L +          +  +  +LGI   +  E           +
Sbjct: 32  LFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETV 91

Query: 61  AKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE 119
              +   +++      S  + +   F+    F          +         +       
Sbjct: 92  TLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNWSFAKPEH 151

Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK---------PTSIEKEIFP---- 166
            G  +      +  +S+  + G+Y FN         +             E  I P    
Sbjct: 152 AGSTKVIQTAEKNPISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNE 211

Query: 167 LMSKEKQLYAMEL-KGFWMDVGQPRDF 192
           L+ K   ++   + +   +  G P ++
Sbjct: 212 LIQKGLNIHYHLIARHEVIFCGVPDEY 238

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 70  EPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
           EP  V+  D+I D            +++      G    I+V  V + + YGVV      
Sbjct: 129 EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVADVTAYGVVDCKGVE 187

Query: 122 C-------IESFIEKP--QEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEI-----FPL 167
                   +   +EKP      SN    G Y+ +  +   +   P     EI       +
Sbjct: 188 LAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDM 247

Query: 168 MSKEKQLYAMELKGFWMDVGQPRDFLK 194
           + +++ + A  +KG   D G    +++
Sbjct: 248 LIEKETVEAYHMKGKSHDCGNKLGYMQ 274

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
           N LRQK  +  ++  G      + P+A + P  R+G  V +  GV I     I    I+ 
Sbjct: 81  NRLRQKLGRKARD-HGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIIN 139

Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVR-MENITVLGECIIGWKCVVG-QWVRMENITVLGE 318
                      G ++   C +G          + G   +G +  +G     +  +T+ G 
Sbjct: 140 T----------GAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTI-GA 188

Query: 319 DVIV 322
           D IV
Sbjct: 189 DTIV 192

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLEGCIIGWK 278
             +++  A +   CR+G    +GP   + GGV + +R+ +   A V     + G  IG  
Sbjct: 135 LAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARV-----IPGVTIGAD 189

Query: 279 CVVG 282
            +VG
Sbjct: 190 TIVG 193

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 70  EPFFVLNSDIICDFPF-----KDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGC 122
           EPF V+ +D +C         K + S ++ +     + + +V  EE SKYGV+       
Sbjct: 122 EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEE 180

Query: 123 ----IESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEI-----FPLMSKE 171
               I+  +EKP   +  SN    G YI  P + + +         EI         +K 
Sbjct: 181 GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKR 240

Query: 172 KQLYAMELKGFWMDVGQPRDFLK 194
           K++ A + KG   D G    +++
Sbjct: 241 KRIIAYQFKGKRYDCGSVEGYIE 263

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRI--GPNVTIGPGVVIEGGVCIKRSTI 258
           N +R+K  + + E +G     L+  +A I P   +     + I P VVI     I++  I
Sbjct: 57  NEIRKKIYQKISE-NGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVI 115

Query: 259 LRDAIVKSHSWLEGCIIGWKCVVGQWV-RMENITVLGECIIGWKCVVGQWVRMENITVLG 317
           L              +I  +CV+G++          G   IG  C +G    +     L 
Sbjct: 116 LN----------TSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLA 165

Query: 318 EDVIV 322
           +D I+
Sbjct: 166 DDSIL 170

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLEGCIIGWK 278
            V+++ ++ I   C IG    +  G    G V I K   +  ++ V     L    +   
Sbjct: 113 GVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCV-----LPNLSLADD 167

Query: 279 CVVG 282
            ++G
Sbjct: 168 SILG 171

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSW 269
           ++E  GI+    + P   I    +I   V +    VIE    I + S +   A    +  
Sbjct: 90  VEENAGIL----IMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGN-- 143

Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
                IG  C +G      N  VL    +    ++G
Sbjct: 144 ---VKIGKNCFLGI-----NSCVLPNLSLADDSILG 171

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 17/141 (12%)

Query: 70  EPFFVLNSDIICDFP---FKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGC-- 122
           EPF VL  D          K +V  +   G    I   +V  ++  +YG++         
Sbjct: 133 EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVL 191

Query: 123 --IESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEI-----FPLMSKEKQ 173
             ++  +EKP      SN    G YI  P V+  +E +      EI        M  ++ 
Sbjct: 192 TEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQP 251

Query: 174 LYAMELKGFWMDVGQPRDFLK 194
            + +  +G   D G    F++
Sbjct: 252 FHGVTFQGTRYDCGDKAGFIQ 272

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 30/250 (12%), Positives = 61/250 (24%), Gaps = 62/250 (24%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDE---------------LTVETKKLGISLVF 45
           ++ + +   + AG   ++  + +  E+   E                    +        
Sbjct: 35  IMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCP 94

Query: 46  SHENEPLGTAGPLALAKDILNKSQEPFFVLNSD-IICDFPFKDLVSFHKNHGKEGTIVVT 104
               +P GT   + + +D +    EPF V+N+D       F+ L         +      
Sbjct: 95  EGREKPWGTNHAVLMGRDAIR---EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCM 151

Query: 105 QV---------EEPSKYGVVLYNEHGCIESF-----IEKPQEFV--------------SN 136
                            GV   +E   +        IE+    +                
Sbjct: 152 VGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDA 211

Query: 137 KINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQL---------------YAMELKG 181
            ++  M+ F P   D  E    +           E  +                 ++   
Sbjct: 212 PVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTA 271

Query: 182 FWMDVGQPRD 191
            W  V    D
Sbjct: 272 RWFGVTYSDD 281

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 17/101 (16%), Positives = 37/101 (36%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
              +     +G   RIG  V I   V +   V ++       ++V ++ +     I  K 
Sbjct: 39  GCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKS 98

Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
                +  +  T+   C +     +G++  +    V+ +DV
Sbjct: 99  EYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDV 139

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 23/109 (21%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
              + PTA +  G RIG +  I   V I                        G  IG  C
Sbjct: 3   MATIHPTAIVDEGARIGAHSRIWHWVHI----------------------CGGAEIGEGC 40

Query: 280 VVGQWVRMENITVLGE-CIIGWKCVVGQWVRMENITVLGEDVIVQDELY 327
            +GQ V + N   +G    I     V   V +E+    G  ++  +   
Sbjct: 41  SLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYN 89

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 12/127 (9%)

Query: 220 NVLVDPTATIGPGCRIGP------NVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL-E 271
             +VD  A IG   RI           IG G  +   V +  R  I     ++++  + +
Sbjct: 9   TAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYD 68

Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWK----CVVGQWVRMENITVLGEDVIVQDELY 327
              +      G  +   N+      I         +V Q   +     +     +    +
Sbjct: 69  NVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAF 128

Query: 328 VNGGQVL 334
           V  G V+
Sbjct: 129 VGAGAVV 135

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 27/138 (19%)

Query: 236 GPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE 295
           G   TI P  +++                      EG  IG    +  WV      + G 
Sbjct: 1   GHMATIHPTAIVD----------------------EGARIGAHSRIWHWV-----HICGG 33

Query: 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDE 355
             IG  C +GQ V + N   +G  V +Q+ + V     L          +       +  
Sbjct: 34  AEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAA 93

Query: 356 LYVNGGQVLPHKSIGSSV 373
           +             G+++
Sbjct: 94  IERKSEYRDTIVRQGATL 111

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVV 281
           + PTA I PG ++   V +GP  ++   V I   T +      SHS +EG   IG    +
Sbjct: 25  IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTI-----GSHSVIEGHTTIGEDNRI 79

Query: 282 GQ 283
           G 
Sbjct: 80  GH 81

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CII 275
           I  +  V PTA +  G  IG N  IGP  ++   V I   T+L     KSH  + G   I
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL-----KSHVVVNGHTKI 56

Query: 276 GWKCVVGQ 283
           G    + Q
Sbjct: 57  GRDNEIYQ 64

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKC 279
           + + PTA I P   +  +V +GP  +IEG V I+  TI+     + H  +     IG   
Sbjct: 1   MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTII-----EGHVKICAGSEIGKFN 55

Query: 280 VVGQ 283
              Q
Sbjct: 56  RFHQ 59

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIV-----------KSH 267
           +V V P + I     I     I   V I  G  I K +   + A++           +  
Sbjct: 18  SVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLL 77

Query: 268 SWLEGCIIGWKCVVGQWVRM------ENITVLGE-------CIIGWKCVVGQWVRMENIT 314
           +      IG   +  ++  +      ++ TV+G          +G  C++G    + +  
Sbjct: 78  TKTV---IGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGA 134

Query: 315 VLGEDVIVQDELYVN-GGQVLPHK--SIGSSLHMLGEDVIVQD 354
           VL   V + +  +    G V  H+   +G    + G   +VQD
Sbjct: 135 VLAGHVTLGN--FAFISGLVAVHQFCFVGDYSMVAGLAKVVQD 175

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVV 281
           + P+A I  G ++G +V I     +     I  + ++     K  + +     IG    V
Sbjct: 7   IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVI-----KQGARILSDTTIGDHSRV 61

Query: 282 GQ 283
             
Sbjct: 62  FS 63

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIV-----------KSH 267
           +V+++  A +    +IG NV I  G  I     I   S +   AIV           +  
Sbjct: 22  DVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQK 81

Query: 268 SWLEGCIIGWKCVVGQWVRM-------ENITVLGE-------CIIGWKCVVGQWVRMENI 313
           S +    IG    + ++  +       +  T +G+       C I   C++G  + + N 
Sbjct: 82  SGVV---IGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANN 138

Query: 314 TVLGEDVIVQDELYVN-GGQVLPHK--SIGSSLHMLGEDVIVQD 354
             L   V + D  +   GG    H+   +G    + G   + QD
Sbjct: 139 ATLAGHVELGD--FTVVGGLTPIHQFVKVGEGCMIAGASALSQD 180

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVV 281
           +  TA I P   I   V IG   VI  GV +     L      ++  L+G   +G    +
Sbjct: 4   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKL-----HNNVTLQGHTFVGKNTEI 58

Query: 282 GQ 283
             
Sbjct: 59  FP 60

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 31/162 (19%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKS----------HS 268
            V +     IG G ++   V +   V ++G   + K + I   A++ +          +S
Sbjct: 19  GVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYS 78

Query: 269 WLEGCIIGWKCVVGQWVRM-------ENITVLGE-------CIIGWKCVVGQWVRMENIT 314
            L    IG   ++ ++  +          T++G+         +   CV+G    + N  
Sbjct: 79  ELI---IGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGV 135

Query: 315 VLGEDVIVQDELYVNGGQVLPHK--SIGSSLHMLGEDVIVQD 354
            L   + + D + + GG    H+   I     + G+  + +D
Sbjct: 136 TLAGHIEIGDYVNI-GGLTAIHQFVRIAKGCMIAGKSALGKD 176

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCI 274
           D     VL+ P+A + P   IG  V++GP   I   V +     L        S + G  
Sbjct: 2   DSRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKL-----YPSSHVFGNT 56

Query: 275 IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNG 330
              +  V     +    + G   IG   ++G         V+G     QD  Y +G
Sbjct: 57  ELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHA------VVGVK--CQDLKYKHG 104

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 5/147 (3%)

Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
           G W ++    D      +       +R   +   D       ++P A I     IG N  
Sbjct: 52  GEWSEIKTILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAV 111

Query: 241 IGPGVVIEGGVCI-KRSTILRDAIVKSHSWLE-GCIIGWKCVVG---QWVRMENITVLGE 295
           I     I  G  I + S I  +A++   + +   C +G   V+    +    + + V  +
Sbjct: 112 IMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDD 171

Query: 296 CIIGWKCVVGQWVRMENITVLGEDVIV 322
            +IG   VV + V +    V+    +V
Sbjct: 172 VVIGANVVVLEGVTVGKGAVVAAGAVV 198

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 21/164 (12%)

Query: 50  EPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIV-VTQV 106
           +PLG    + LA+ +L+  ++   V+  D +       + +       G  G+++   +V
Sbjct: 114 KPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFG--GSVLCAVEV 171

Query: 107 --EEPSKYGVVLYNEHGC------IESFIEKP--QEFVSNKINAGMYIFNPSVLDRIEIK 156
              + SKYG+              ++  +EKP  ++  S     G Y+ +  + D +   
Sbjct: 172 SEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRI 231

Query: 157 PTSIEKEI------FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
                 E+        L+ +   ++ +  +G   D+G P  ++ 
Sbjct: 232 TPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIP 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 82/219 (37%)

Query: 62  KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQ------VEEPSK---- 111
           KDIL+  ++ F       + +F  KD+    K+       ++++      +         
Sbjct: 19  KDILSVFEDAF-------VDNFDCKDVQDMPKS-------ILSKEEIDHIIMSKDAVSGT 64

Query: 112 ---YGVVLYNEHGCIESFIE----KPQEFVSNKI---------NAGMYI----------- 144
              +  +L  +   ++ F+E       +F+ + I            MYI           
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 145 -FNPSVLDRIEIKPTSIEKEIFPL----------M-------------SKEKQLYAMELK 180
            F    + R++     + + +  L          +                K    M+ K
Sbjct: 125 VFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 181 GFWMDVGQ---PRDFLKGMCLYLNSLRQKRPKLLKEGDG 216
            FW+++     P   L+ +      L Q  P      D 
Sbjct: 184 IFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDH 219

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           +L   ++   +AG  ++IL +   A  +   +       G  +V   E+   G A  L +
Sbjct: 33  VLGATLDVARQAGFDQLILTLGGAASAVRAAM----ALDGTDVVV-VEDVERGCAASLRV 87

Query: 61  AKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHG 96
           A   ++       ++  D   +     + ++       
Sbjct: 88  ALARVHPRATGIVLMLGDQPQVAPATLRRIIDVGPATE 125

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI------KRSTILRDAIVK 265
           ++ + +  +  +   A    G  +     I    VI   V +        + + + +  +
Sbjct: 259 EDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQ 318

Query: 266 SHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
            + ++    +   CV            +    +G     G
Sbjct: 319 ENCYIINSRLERNCVTAHG------GKIINAHLGDMIFTG 352

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} Length = 308

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 40/149 (26%)

Query: 25  AEQMEDELTVETKKLGISLVFSHENEPLG--TAGPLALAKDILNKSQEP-FFVLNSD-II 80
            E++++E+  ++   G  L      E L   TA  +AL+   L   +E    V  SD +I
Sbjct: 67  LEEIKNEIKNKSV--GFLL------ESLSKNTANAIALS--ALMSDKEDLLIVTPSDHLI 116

Query: 81  CDFP-FKDLVSFHKNHGKEGTIV---VTQVEEPSK----YGVVLYNEHG---CIESFIEK 129
            D   +++ +    +  ++G +V   V+      K    +G   Y E      ++ FIEK
Sbjct: 117 KDLQAYENAIKKAIDLAQKGFLVTFGVS----IDKPNTEFG---YIESPNGLDVKRFIEK 169

Query: 130 P-----QEFVSNKI---NAGMYIFNPSVL 150
           P      EF  +     N+GM++F   V 
Sbjct: 170 PSLDKAIEFQKSGGFYFNSGMFVFQAGVF 198

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 25/153 (16%)

Query: 202 SLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEG----GVCIKRST 257
           S     P+       I     V   + +    RI   V I PG  I         I   T
Sbjct: 34  SRDLAEPE-------IAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRT 86

Query: 258 ILRDAIV----KSHSWLEGCIIGWKCVVGQWVRMENITVL-GECIIGWKCVVGQWVRMEN 312
            ++D +V    +    +      +   +G  V + ++ ++ G   IG  C +G       
Sbjct: 87  NIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIG----F-R 141

Query: 313 ITVL----GEDVIVQDELYVNGGQVLPHKSIGS 341
            TV     G   +V   + +   ++ P K + S
Sbjct: 142 STVFNARVGAGCVVMMHVLIQDVEIPPGKYVPS 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	100.0
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	100.0
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	100.0
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	100.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.97
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.94
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.93
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.92
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.92
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.91
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.91
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.91
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.91
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.9
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.9
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.9
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.89
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.89
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.89
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.89
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.89
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.88
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.88
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.88
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.88
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.86
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.86
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.84
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.84
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.82
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.81
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.81
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.81
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.8
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.8
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.8
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.8
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.8
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.8
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.8
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.78
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.78
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.78
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.78
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.78
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.77
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.77
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.76
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.74
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.74
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.73
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.73
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.73
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.73
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.73
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.73
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.72
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.71
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.71
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.7
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.7
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.69
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.69
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.69
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.69
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.69
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.68
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.68
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.68
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.67
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.67
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.67
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.66
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.66
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.66
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.64
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.64
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.63
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.63
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.63
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.63
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.62
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.62
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.61
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.6
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.6
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.59
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.59
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.58
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.57
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.57
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.56
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.55
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.55
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.55
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.55
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.53
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.53
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.53
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.53
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.52
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.51
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.5
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.5
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.5
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.49
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.48
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.47
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.44
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.42
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.41
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.41
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.41
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.4
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.4
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.39
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.38
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.37
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.36
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.36
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.33
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.31
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.31
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.31
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.31
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.28
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.24
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.2
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.19
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.18
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.16
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.15
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.13
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.11
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.08
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.06
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.06
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.04
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.02
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	98.98
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	98.94
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	98.91
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.88
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	98.8
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	98.73
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	98.71
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	98.7
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	98.68
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	98.65
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	98.4
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	98.22
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	98.14
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	98.05
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	98.04
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	97.99
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	97.96
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	97.77
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	97.52
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	97.27
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	97.06
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	95.23
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	92.81
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	88.47
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	86.92
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	83.81
3bcv_A	240	Putative glycosyltransferase protein; protein stru	82.5

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=100.00  E-value=5.7e-44  Score=342.40  Aligned_cols=361  Identities=21%  Similarity=0.316  Sum_probs=270.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|+++|+|++++..+++.+++.+     ++  .+..+++..|++++++.+.+++....+.||+++||. 
T Consensus        41 li~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~-----~i--~~v~~~~~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P  113 (468)
T 1hm9_A           41 MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QT--EFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTP  113 (468)
T ss_dssp             HHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS-----SS--EEEECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCT
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC-----Cc--EEEeCCccCChHHHHHHHHHHhccCCCeEEEEeCCcc
Confidence            6899999999999999999999998888888754     33  345567788999999999999842246799999999 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC----CCCCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ----EFVSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~----~~~~~~~~~giyi~~~~~l-~~l  153 (380)
                       +.+.+++++++.|++.+++++++..+.+++..||.+..|+++++..|.|||.    .....+.++|+|+|+++.+ +.+
T Consensus       114 ~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l  193 (468)
T 1hm9_A          114 LITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEAL  193 (468)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCCCCEEEEEECCCCChHHhcCeEEEEEEEEEEHHHHHHHH
Confidence             6678899999999998888999999988888999999988899999999864    2246799999999999854 554


Q ss_pred             cCC------CCCcccchhhhhhcCC-cEEEEEeccEEEe--cCChhhHHHHHHHHHhhhccc----CcccccC-CCcccc
Q psy9164         154 EIK------PTSIEKEIFPLMSKEK-QLYAMELKGFWMD--VGQPRDFLKGMCLYLNSLRQK----RPKLLKE-GDGIVG  219 (380)
Q Consensus       154 ~~~------~~~~~~~il~~l~~~~-~i~~~~~~~~~~~--i~~~~~~~~a~~~~l~~~~~~----~~~~~~~-~~~i~~  219 (380)
                      +..      ...+..++++.+.+++ +++.+..+++|.+  ++++++|.++...+..+....    ....+.+ ...+.+
T Consensus       194 ~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  273 (468)
T 1hm9_A          194 KNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDI  273 (468)
T ss_dssp             TTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECT
T ss_pred             HhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECC
Confidence            321      1122367888888775 8999999999977  559999988876655433211    1111222 345677


Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ++.|++++.|++++.|++++.||++|.|++++.|+++.||++|.|+ ++.+.++.||+++.|++++.|.+     +++||
T Consensus       274 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~-----~~~ig  347 (468)
T 1hm9_A          274 DVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRP-----NSSLG  347 (468)
T ss_dssp             TCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECS-----SCEEC
T ss_pred             CcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEec-----CcEEC
Confidence            7888888888888888888899999999999999899999999999 88888888888888888888853     44444


Q ss_pred             ccceeCcceEEc-----------c-----ceEECCCeEECcceEEcC-------Ceeecc-eeecCcceeecceeEecCc
Q psy9164         300 WKCVVGQWVRME-----------N-----ITVLGEDVIVQDELYVNG-------GQVLPH-KSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       300 ~~~~ig~~~~i~-----------~-----~~~ig~~~~ig~~~~i~~-------~~v~~~-~~i~~~~~~~~~~v~i~~~  355 (380)
                      +++.||+++.+.           +     .+.||++++||+++.+..       ++++++ ..||.+++ +.++++||++
T Consensus       348 ~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~-i~~~v~Ig~~  426 (468)
T 1hm9_A          348 AQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNST-IIAPVELGDN  426 (468)
T ss_dssp             TTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCE-EESSCEECTT
T ss_pred             CccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCE-EeCCcEECCC
Confidence            444444444432           1     134444455554444432       222222 33444433 3557889999


Q ss_pred             eEEeceeeeccccccCCCCCCCccC
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      ++||++++     |++|+|++++++
T Consensus       427 ~~i~~~s~-----v~~~v~~~~~~~  446 (468)
T 1hm9_A          427 SLVGAGST-----ITKDVPADAIAI  446 (468)
T ss_dssp             CEECTTCE-----ECSCBCTTCEEC
T ss_pred             CEECCCCE-----ECCCCCCCCEEE
Confidence            99999999     999999999864

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=100.00  E-value=2.2e-43  Score=340.03  Aligned_cols=373  Identities=16%  Similarity=0.226  Sum_probs=254.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC-CCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS-QEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~-~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|+++|+|+++|+.+++++|+.+..+.++.++.|..|++++|||+|++++++++.+. .+++|+++||.
T Consensus        42 ~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~  121 (501)
T 3st8_A           42 MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDT  121 (501)
T ss_dssp             HHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTC
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHHHHhccccccceeeecCcc
Confidence            69999999999999999999999999999999875566788999999999999999999999999532 45789999997


Q ss_pred             -cc-CCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC----CCCCCeEEEEEEEeCHhHHhhc
Q psy9164          80 -IC-DFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ----EFVSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus        80 -i~-~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~----~~~~~~~~~giyi~~~~~l~~l  153 (380)
                       +. ..++.+++++|++.++.+|+++.+.++|.+||++..|+++++..|+|||.    +..++++++|+|+|+++.|..+
T Consensus       122 ~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~  201 (501)
T 3st8_A          122 PLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSA  201 (501)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHHCCEEEEEEEEEEHHHHHHH
T ss_pred             eeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccceeEEeeccccCCChhhccceeeeceeeeecchhHHHh
Confidence             33 45589999999999999999999999999999999999999999999965    3456899999999999988655


Q ss_pred             cC----CCC---CcccchhhhhhcCC-cEEEEEeccEEEecCC--hhhHHHHHHHHHhhhcc----cCcccc-cCCCccc
Q psy9164         154 EI----KPT---SIEKEIFPLMSKEK-QLYAMELKGFWMDVGQ--PRDFLKGMCLYLNSLRQ----KRPKLL-KEGDGIV  218 (380)
Q Consensus       154 ~~----~~~---~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~--~~~~~~a~~~~l~~~~~----~~~~~~-~~~~~i~  218 (380)
                      ..    ...   ....++++.+...+ .+..+.....|...+.  ...+.+....+..+...    ...... .....+.
T Consensus       202 l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~  281 (501)
T 3st8_A          202 LSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWID  281 (501)
T ss_dssp             HTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEC
T ss_pred             hhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeecccccc
Confidence            22    111   12234556666665 4556666555544433  22222222222211111    011111 1222345


Q ss_pred             cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEE------------cCCCEECCceE
Q psy9164         219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII------------GWKCVVGQWVR  286 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i------------g~~~~ig~~~~  286 (380)
                      ..+.|++++.|++++.+.+++.++.+|.+++++.+.++.+++++.+. ++.+..+.+            .+++.|++++.
T Consensus       282 ~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~  360 (501)
T 3st8_A          282 VDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVV-RTHGSSSSIGDGAAVGPFTYLRPGTALGADGK  360 (501)
T ss_dssp             TTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEEC-SEEEEEEEECTTCEECSSEEECTTCEECTTCE
T ss_pred             CceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEE-eecccccccccccccCCceeecCCcEEccccc
Confidence            56667777777777777777777788888777777766666655442 222222222            33333333333


Q ss_pred             EeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcC--CeeecceeecCcc-----eeecceeEecCceEEe
Q psy9164         287 MENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNG--GQVLPHKSIGSSL-----HMLGEDVIVQDELYVN  359 (380)
Q Consensus       287 i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~--~~v~~~~~i~~~~-----~~~~~~v~i~~~~~i~  359 (380)
                      |++.....+++||+++.|+..+.+++ ++||++|.||+++++.+  |....++.||+++     +.+.++|+||++|+||
T Consensus       361 IG~~v~ik~s~Ig~gskI~~~~~i~d-~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~  439 (501)
T 3st8_A          361 LGAFVEVKNSTIGTGTKVPHLTYVGD-ADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTG  439 (501)
T ss_dssp             EEETEEEESCEECTTCEEEESCEEES-EEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEEC
T ss_pred             cCCeEEEccceecCCcEEeccceecC-ceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEEC
Confidence            33333335566666666666666654 66677777777666533  1111123344432     3346689999999999


Q ss_pred             ceeeeccccccCCCCCCCccC
Q psy9164         360 GGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       360 ~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      +||+     |+||||++++++
T Consensus       440 ags~-----v~~dvp~~~l~~  455 (501)
T 3st8_A          440 AGTV-----VREDVPPGALAV  455 (501)
T ss_dssp             TTCE-----ECSCBCTTCEEC
T ss_pred             CCCE-----ECcccCCCCeEE
Confidence            9999     999999998753

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=100.00  E-value=3.1e-43  Score=330.72  Aligned_cols=333  Identities=20%  Similarity=0.322  Sum_probs=269.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCC-CCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENE-PLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~-~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|+++++|++++.   +++++.+..  .++  .+..+++ .+|++++++.+.+     .++|++++||.
T Consensus        33 li~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~--~~i--~~~~~~~~~~g~~~~l~~~~~-----~~~~lv~~~D~  100 (401)
T 2ggo_A           33 LIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL--KEI--SIVTQKDDIKGTGAAILSAKF-----NDEALIIYGDL  100 (401)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC--TTC--EEEECCTTCCBSTTTGGGCCC-----SSEEEEEETTE
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC--CcE--EEEeCCCCCCChHHHHHHhcc-----CCCEEEEeCcc
Confidence            689999999999999999999876   677775521  133  3444555 7899999887754     46799999999


Q ss_pred             ccC--CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164          80 ICD--FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP  157 (380)
Q Consensus        80 i~~--~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~  157 (380)
                      ++.  .+++++++     .+++++++.+.+++..|+.+..++++++..+.|||....+++.++|+|+|++++|+.++...
T Consensus       101 ~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~v~~~~~g~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~  175 (401)
T 2ggo_A          101 FFSNEKEICNIIT-----LKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKIS  175 (401)
T ss_dssp             EESCSHHHHHHTT-----CSSEEEEEEECSCCSSSCEEEECTTSSEEEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSC
T ss_pred             ccccHHHHHHHHH-----hcCCEEEEEEcCCCcceeEEEECCCCeEEEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcC
Confidence            766  55666665     35678888888888889999888889999999999877788999999999999998774211


Q ss_pred             ----CCc-ccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHHHHHHHhhhc-ccCcccccCCCccccceeeCCCCEEC
Q psy9164         158 ----TSI-EKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLR-QKRPKLLKEGDGIVGNVLVDPTATIG  230 (380)
Q Consensus       158 ----~~~-~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~i~~~~~i~~~~~i~  230 (380)
                          ..+ ..++++.+ ++ .++..+..+++|.++++|++|.+++..++.+.. ......+.+++.+.+++.+++++.|+
T Consensus       176 ~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~  254 (401)
T 2ggo_A          176 ISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIK  254 (401)
T ss_dssp             CCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEEC
T ss_pred             cCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEEC
Confidence                111 13567776 44 478888888899999999999999887776644 22334567778888899999999999


Q ss_pred             CCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceE
Q psy9164         231 PGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVR  309 (380)
Q Consensus       231 ~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~  309 (380)
                      +++.|.+++.||++|.|++++.|. +++||++|.|++++.|.+++|++++.|++++.+      ++++||++++||+++.
T Consensus       255 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i------~~~~Ig~~~~Ig~~~~  328 (401)
T 2ggo_A          255 SGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYV------GDSVIAEDVNFGAGTL  328 (401)
T ss_dssp             TTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEE------ESCEECTTCEECTTCE
T ss_pred             CCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceE------cceEECCCcEECCCcE
Confidence            999999999999999999999997 799999999999999999999999999999988      5788888888888888


Q ss_pred             Ec------------------------cceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeec
Q psy9164         310 ME------------------------NITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLP  365 (380)
Q Consensus       310 i~------------------------~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p  365 (380)
                      +.                        .+++||+++|||+++.|                  .++++||++++||+|++  
T Consensus       329 i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I------------------~~gv~Ig~~~vi~~gsv--  388 (401)
T 2ggo_A          329 IANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTI------------------LPGVKIGAYARIYPGAV--  388 (401)
T ss_dssp             ECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEE------------------CTTCEECTTCEECTTCE--
T ss_pred             EcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEE------------------cCCcEECCCcEECCCCe--
Confidence            86                        24555555555555555                  56788999999999999  


Q ss_pred             cccccCCCCCCCccC
Q psy9164         366 HKSIGSSVPEPQIIM  380 (380)
Q Consensus       366 ~~~v~~~vp~~~iv~  380 (380)
                         |++|+|++++++
T Consensus       389 ---v~~~vp~~~~v~  400 (401)
T 2ggo_A          389 ---VNRDVGYGEFFK  400 (401)
T ss_dssp             ---ECSCBCTTCEEC
T ss_pred             ---EccccCCCcEEe
Confidence               999999999874

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=4.5e-43  Score=334.26  Aligned_cols=335  Identities=13%  Similarity=0.242  Sum_probs=231.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc-ccC-------CcEEEEeecC-----CCCCCchHHHHhHHhhCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET-KKL-------GISLVFSHEN-----EPLGTAGPLALAKDILNK   67 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~-~~~-------~~~i~~~~~~-----~~~gt~~al~~a~~~i~~   67 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+++.+.+ ..+       .+++....+.     +.+||+++++.+.+++..
T Consensus        54 li~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~  133 (451)
T 1yp2_A           54 LIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEE  133 (451)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTT
T ss_pred             eHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhcccccccccCcEEEecccccccccccccCcHHHHHHHHHHHHh
Confidence            789999999999999999999999999999886521 011       1233332221     258999999999999842


Q ss_pred             -CCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECCCCceeEEEeCCCCC-----------
Q psy9164          68 -SQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNEHGCIESFIEKPQEF-----------  133 (380)
Q Consensus        68 -~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~~~~v~~~~ek~~~~-----------  133 (380)
                       ..++||+++||++++.+|+++++.|+++++++|+++.+.+  ++.+||++..|++++++.|.|||...           
T Consensus       134 ~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~  213 (451)
T 1yp2_A          134 HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTI  213 (451)
T ss_dssp             SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGG
T ss_pred             cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccc
Confidence             1477999999999999999999999998889999887764  56789999999889999999998631           


Q ss_pred             ----------CCCeEEEEEEEeCHhHHh-hccC---CCCCcccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         134 ----------VSNKINAGMYIFNPSVLD-RIEI---KPTSIEKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       134 ----------~~~~~~~giyi~~~~~l~-~l~~---~~~~~~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                                ...++++|+|+|++++|. .++.   ...++.+++++.++++ .+++++..+++|.+++++++|.+++..
T Consensus       214 l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~  293 (451)
T 1yp2_A          214 LGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLG  293 (451)
T ss_dssp             GSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHG
T ss_pred             cccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHH
Confidence                      356889999999999884 4543   2345667889988887 589999999999999999999999877


Q ss_pred             HHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCC
Q psy9164         199 YLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWK  278 (380)
Q Consensus       199 ~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~  278 (380)
                      ++.+... ....+.+.+.+++++.|++++++ +++.| .++.||++|.|+. +.|.+++||++|.||+++.|.++.+..+
T Consensus       294 l~~~~~~-~~~~~~~~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~  369 (451)
T 1yp2_A          294 ITKKPVP-DFSFYDRSAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGA  369 (451)
T ss_dssp             GGCSSSC-SSCSCCSSSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCC
T ss_pred             Hhccccc-chhccCCCCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECC
Confidence            6644321 11233444455555555555555 44555 3455555555554 5555555555555555555554444333


Q ss_pred             -------------------CEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-ccee
Q psy9164         279 -------------------CVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKS  338 (380)
Q Consensus       279 -------------------~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~  338 (380)
                                         +.||++|.|      ++                  ++||++|+||++++|.++..+ .+.+
T Consensus       370 ~~~~~~~~~~~~~~~g~~~~~Ig~~~~i------~~------------------~~Ig~~~~IG~~~~i~~~~~~~~~~~  425 (451)
T 1yp2_A          370 DYYETDADRKLLAAKGSVPIGIGKNCHI------KR------------------AIIDKNARIGDNVKIINKDNVQEAAR  425 (451)
T ss_dssp             SSCCCHHHHHHHHTTTCCCSEECTTCEE------ES------------------EEECTTCEECTTCEECCSSCCSCEEE
T ss_pred             CCcccccccccccccCceeEEECCCCEE------ec------------------cEeCCCcEECCCCEEeCCcccccCce
Confidence                               444444444      23                  445555555555555543322 2334


Q ss_pred             ecCcceeecceeEecCceEEeceee
Q psy9164         339 IGSSLHMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       339 i~~~~~~~~~~v~i~~~~~i~~~~v  363 (380)
                      ||+++.+..+.|+||++++||+|++
T Consensus       426 ig~~~~ig~~~v~Ig~~a~i~agsv  450 (451)
T 1yp2_A          426 ETDGYFIKSGIVTVIKDALIPSGII  450 (451)
T ss_dssp             GGGTEEEETTEEEECTTCEECTTCB
T ss_pred             eCCCEEEcCCEEEECCCcEECCCcc
Confidence            5555444333367999999999987

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=100.00  E-value=2.1e-42  Score=330.78  Aligned_cols=359  Identities=19%  Similarity=0.274  Sum_probs=266.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|+.|.++|+++++|++++..+++++++.+.      .+.+..+++..||+++++.+.+++. ..+.|++++||. 
T Consensus        38 li~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~------~~~~v~~~~~~g~~~~i~~~~~~~~-~~~~~lv~~~D~P  110 (459)
T 4fce_A           38 MVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP------SLNWVLQAEQLGTGHAMQQAAPHFA-DDEDILMLYGDVP  110 (459)
T ss_dssp             HHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----------CEEECSSCCCHHHHHHHHGGGSC-TTSEEEEEETTCT
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC------CcEEEeCCCCCCcHHHHHHHHHhcC-CCCcEEEEeCCcc
Confidence            68999999999999999999999999999998652      3445557788999999999999994 237899999998 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC----CCCCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ----EFVSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~----~~~~~~~~~giyi~~~~~l-~~l  153 (380)
                       +.+.+++++++.|++  .+++++..+.+++..|+.+..+ ++++..+.|||.    .....+.++|+|+|+++.+ +.+
T Consensus       111 ~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l  187 (459)
T 4fce_A          111 LISVDTLQRLLAAKPE--GGIGLLTVKLDNPSGYGRIVRE-NGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWL  187 (459)
T ss_dssp             TCCHHHHHHHHHHCCT--TSEEEEEEECSCCTTSCEEEEE-TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhh--CCEEEEEEecCCCCcccEEEeC-CCcEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHH
Confidence             667779999998865  4578888888888999998886 789999999853    3456889999999999976 443


Q ss_pred             cC------CCCCcccchhhhhhcCC-cEEEEEeccEE--EecCChhhHHHHHHHHHhhhccc-----CcccccCCCcccc
Q psy9164         154 EI------KPTSIEKEIFPLMSKEK-QLYAMELKGFW--MDVGQPRDFLKGMCLYLNSLRQK-----RPKLLKEGDGIVG  219 (380)
Q Consensus       154 ~~------~~~~~~~~il~~l~~~~-~i~~~~~~~~~--~~i~~~~~~~~a~~~~l~~~~~~-----~~~~~~~~~~i~~  219 (380)
                      +.      .......++++.+.+.+ ++..+..+++|  .++++|++|..+...+..+....     ..-...+...+.+
T Consensus       188 ~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~  267 (459)
T 4fce_A          188 SLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRG  267 (459)
T ss_dssp             HTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEE
T ss_pred             HHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeC
Confidence            22      11123356778777765 78889888755  77999999998865554433211     1111122334667


Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ++.+++++.|++++.|++++.||++|.|++++.|.++.||++|.|++++.|.++.||++|.||+++.|.+     ++.||
T Consensus       268 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~-----~~~ig  342 (459)
T 4fce_A          268 ELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRP-----GAELA  342 (459)
T ss_dssp             EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECT-----TCEEC
T ss_pred             cEEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECC-----CcEEC
Confidence            7888888888888888888999999999999999999999999999999998889999999988888843     44445


Q ss_pred             ccceeCcceEEc-----------c-----ceEECCCeEECcceEEcC-------Ceeec-ceeecCcceeecceeEecCc
Q psy9164         300 WKCVVGQWVRME-----------N-----ITVLGEDVIVQDELYVNG-------GQVLP-HKSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       300 ~~~~ig~~~~i~-----------~-----~~~ig~~~~ig~~~~i~~-------~~v~~-~~~i~~~~~~~~~~v~i~~~  355 (380)
                      +++.||+++.+.           +     .+.||++++||+++.+..       +++++ +.+||.+++ +.++++||++
T Consensus       343 ~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~-I~~gv~Ig~~  421 (459)
T 4fce_A          343 EGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQ-LVAPVTVANG  421 (459)
T ss_dssp             TTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCE-EESSEEECTT
T ss_pred             CCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCE-EcCCcEECCC
Confidence            555554444432           1     134555555555555543       22222 234555544 4678999999


Q ss_pred             eEEeceeeeccccccCCCCCCCccC
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      ++||+||+     |+||+|++++++
T Consensus       422 ~~igagsv-----V~~~v~~~~~~~  441 (459)
T 4fce_A          422 ATIGAGTT-----VTRDVAENELVI  441 (459)
T ss_dssp             CEECTTCE-----ECSCBCTTCEEC
T ss_pred             CEECCCCE-----EccccCCCCEEE
Confidence            99999999     999999999874

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=100.00  E-value=3.9e-42  Score=328.73  Aligned_cols=359  Identities=18%  Similarity=0.284  Sum_probs=277.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+|++|.++|+++++|++++..+++++++.+.    ++  .+..+++.+|++++++.+.+++.. .+.|++++||. 
T Consensus        35 li~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~--~~v~~~~~~g~~~~~~~~~~~~~~-~~~vlv~~~D~P  107 (456)
T 2v0h_A           35 MVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE----QV--NWVLQTEQLGTAHAVQQAAPFFKD-NENIVVLYGDAP  107 (456)
T ss_dssp             HHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC----CC--EEEECSCCCCHHHHHHHHGGGCCT-TSEEEEEETTCT
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC----Cc--EEEeCCCCCCcHHHHHHHHHhcCC-CCeEEEEcCCcc
Confidence            68999999999999999999999888999988652    33  455567788999999999999832 46799999998 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHH-hhc
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVL-DRI  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l-~~l  153 (380)
                       +.+.+++++++.|++  ++++++..+.+++..|+.+..+ ++++..+.|+|..    ....+.++|+|+|+++.+ +.+
T Consensus       108 ~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l  184 (456)
T 2v0h_A          108 LITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIRE-NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWL  184 (456)
T ss_dssp             TCCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEEE-TTEEEEEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHH
T ss_pred             eeCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEEc-CCcEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHH
Confidence             567789999998876  5678888888888889988887 8899999998652    235789999999999865 444


Q ss_pred             cCC------CCCcccchhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhccc----CcccccC-CCcccc
Q psy9164         154 EIK------PTSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQK----RPKLLKE-GDGIVG  219 (380)
Q Consensus       154 ~~~------~~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~----~~~~~~~-~~~i~~  219 (380)
                      +..      ......++++.+.+.+ ++..+..+++  |.++++|++|.++...+..+....    ......+ ...+++
T Consensus       185 ~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  264 (456)
T 2v0h_A          185 ARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRG  264 (456)
T ss_dssp             TTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEE
T ss_pred             HHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcC
Confidence            321      1122356788887765 7888888654  578999999998876554432211    1111222 456778


Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG  299 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig  299 (380)
                      ++.+++++.|++++.|+++++||++|.|++++.|.++.||++|.|++++.|.++.||+++.|++++.|.+     ++.||
T Consensus       265 ~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~-----~~~ig  339 (456)
T 2v0h_A          265 TLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRP-----GAELA  339 (456)
T ss_dssp             EEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECT-----TCEEC
T ss_pred             ceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECC-----CCEEC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999953     55556


Q ss_pred             ccceeCcceEEc-----------c-----ceEECCCeEECcceEEcC-------Ceeecc-eeecCcceeecceeEecCc
Q psy9164         300 WKCVVGQWVRME-----------N-----ITVLGEDVIVQDELYVNG-------GQVLPH-KSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       300 ~~~~ig~~~~i~-----------~-----~~~ig~~~~ig~~~~i~~-------~~v~~~-~~i~~~~~~~~~~v~i~~~  355 (380)
                      +++.||+++.+.           +     .+.||++|+||+++.+..       ++++++ .+||.++++ .++++||++
T Consensus       340 ~~~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i-~~~v~Ig~~  418 (456)
T 2v0h_A          340 AETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQL-VAPVKVANG  418 (456)
T ss_dssp             TTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEE-EESEEECTT
T ss_pred             CCCEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEE-cCCcEECCC
Confidence            666655555543           1     246677777777776654       333333 455655444 568899999


Q ss_pred             eEEeceeeeccccccCCCCCCCccC
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      ++||++|+     |++|+|++++++
T Consensus       419 ~~ig~~s~-----v~~~v~~~~~~~  438 (456)
T 2v0h_A          419 ATIGAGTT-----ITRDVGENELVI  438 (456)
T ss_dssp             CEECTTCE-----ECSCBCTTCEEC
T ss_pred             CEECCCCE-----ECCCcCCCCEEE
Confidence            99999999     999999999864

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.5e-37  Score=293.19  Aligned_cols=303  Identities=20%  Similarity=0.337  Sum_probs=216.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc------cCCcEEEEeecC--CC---CCCchHHHHhHHhhCC-C
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK------KLGISLVFSHEN--EP---LGTAGPLALAKDILNK-S   68 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~------~~~~~i~~~~~~--~~---~gt~~al~~a~~~i~~-~   68 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+++.+.+.      ..++++....+.  +.   .||+++++.+.+++.. .
T Consensus        46 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~  125 (420)
T 3brk_X           46 IIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYA  125 (420)
T ss_dssp             THHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhccccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcC
Confidence            7999999999999999999999998999999875210      011333222221  22   8999999999998831 1


Q ss_pred             CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCC-------CCeEE
Q psy9164          69 QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFV-------SNKIN  139 (380)
Q Consensus        69 ~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~-------~~~~~  139 (380)
                      .++|++++||.+++.+++++++.|+++++++|+++.+.  +++..||++..|+++++..|.|||....       ..+.+
T Consensus       126 ~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~~~~~~~  205 (420)
T 3brk_X          126 PEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPPGIPGNEGFALAS  205 (420)
T ss_dssp             CSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSBEEEEEESCSSCCCBTTBTTEEEEE
T ss_pred             CCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCcEEEeEeCCCccccccccccceEEe
Confidence            36799999999999999999999999888899988876  4667899999988899999999987544       67899


Q ss_pred             EEEEEeCHhHH-hhccCC------CCCcccchhhhhhcCCcEEEEEe-----------ccEEEecCChhhHHHHHHHHHh
Q psy9164         140 AGMYIFNPSVL-DRIEIK------PTSIEKEIFPLMSKEKQLYAMEL-----------KGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       140 ~giyi~~~~~l-~~l~~~------~~~~~~~il~~l~~~~~i~~~~~-----------~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                      +|+|+|++++| +.++..      ..++..++++.++++++++++.+           +++|.+++++++|.+++..++.
T Consensus       206 ~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~  285 (420)
T 3brk_X          206 MGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTD  285 (420)
T ss_dssp             EEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTS
T ss_pred             eeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhC
Confidence            99999999987 445331      22355678899888889999999           8899999999999999888775


Q ss_pred             hhcccCcccccCCCccccceeeCCCCEECC-----CcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEc
Q psy9164         202 SLRQKRPKLLKEGDGIVGNVLVDPTATIGP-----GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG  276 (380)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig  276 (380)
                      ....  ...+.+.+.+.+.+.++|++++++     ++.+ .++.||++|.| +++.|.+++||++|.|++++.|.+|+||
T Consensus       286 ~~~~--~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~  361 (420)
T 3brk_X          286 VVPD--LDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVL  361 (420)
T ss_dssp             SSCS--SCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEEC
T ss_pred             CCch--hhcCCCCCceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEc
Confidence            4321  122344456666666777777766     5555 46666666666 5666666666666666666665555555


Q ss_pred             CCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164         277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       277 ~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~  331 (380)
                      +++.||++|.|                       .. ++||+++.||+++.|+..
T Consensus       362 ~~~~i~~~~~i-----------------------~~-~~ig~~~~i~~~~~i~~~  392 (420)
T 3brk_X          362 PSVKIGRHAQL-----------------------SN-VVIDHGVVIPEGLIVGED  392 (420)
T ss_dssp             TTCEECTTCEE-----------------------EE-EEECTTCEECTTCEESSC
T ss_pred             CCCEECCCCEE-----------------------ec-eEECCCCEECCCCEEeCC
Confidence            55555555555                       43 556666666666666543

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.97  E-value=1.8e-31  Score=246.84  Aligned_cols=274  Identities=16%  Similarity=0.222  Sum_probs=161.6

Q ss_pred             cEEEEeCCcccCC--ChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECC--CCceeEEEeCCCCCCC-CeEEEEEEEe
Q psy9164          71 PFFVLNSDIICDF--PFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE--HGCIESFIEKPQEFVS-NKINAGMYIF  145 (380)
Q Consensus        71 ~~lv~~gD~i~~~--~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~--~~~v~~~~ek~~~~~~-~~~~~giyi~  145 (380)
                      .=|+-.+|+++++  +|++|+++|.     .|+..  .+++..+|+..+++  ++++ .|.|||+.... .+.++|+|+|
T Consensus        12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI~   83 (374)
T 2iu8_A           12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAIII   83 (374)
T ss_dssp             ---------CCSCCEEHHHHHHHTT-----CEEES--CTTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEEE
T ss_pred             cCcccCccccccCcCcHHHHHHhhC-----CEEEC--CCcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEEe
Confidence            3467789999998  8999999985     35543  46677788888773  4566 99999985332 5678999999


Q ss_pred             CHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCC
Q psy9164         146 NPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDP  225 (380)
Q Consensus       146 ~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~  225 (380)
                      ++++++.+..    + .+++| ++.+++.+               .|......+.... ......+.+.+.+.+++.|++
T Consensus        84 ~~~~l~~~~~----~-~~~~p-l~~~~~~~---------------a~~~~~~~~~~~i-~~~~~~i~~~~~i~~~a~Ig~  141 (374)
T 2iu8_A           84 SRTQFQKYRD----L-NKNFL-ITSESPSL---------------VFQKCLELFITPV-DSGFPGIHPTAVIHPTAIIED  141 (374)
T ss_dssp             EHHHHHTSTT----S-CSCEE-EESSCHHH---------------HHHHHHTTTSCCC-CCSCCSBCTTCEECTTCEECT
T ss_pred             ChhHhhhccc----c-ccceE-EEeCCHHH---------------HHHHHHHHhcccc-ccccCccCCCCEECCCcEECC
Confidence            9998753321    1 23344 33222111               1111100000000 111223344444555555555


Q ss_pred             CCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-cCeEEcCCCEECCceEEeee-----e-------
Q psy9164         226 TATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRMENI-----T-------  291 (380)
Q Consensus       226 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~i~~~-----~-------  291 (380)
                      ++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.| .++.||++|.|++++.|+..     .       
T Consensus       142 ~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~  221 (374)
T 2iu8_A          142 HVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHK  221 (374)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETTTEEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccCCcee
Confidence            55555555555555666666666666663 5666667777666666 45777888888888777542     0       


Q ss_pred             ---EecceEECccceeCcceEEc----------------cceEECCCeEECcceEEcCCeee-cceeecCccee-----e
Q psy9164         292 ---VLGECIIGWKCVVGQWVRME----------------NITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLHM-----L  346 (380)
Q Consensus       292 ---~~~~~~ig~~~~ig~~~~i~----------------~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~~-----~  346 (380)
                         ..+.++||++++||+++.|.                +.+.|++++.||+++.|.+++.+ .+.+||+++.+     +
T Consensus       222 ~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i  301 (374)
T 2iu8_A          222 HLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGI  301 (374)
T ss_dssp             ECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             EeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEccCcccCCCcEECCCeEEecCcEE
Confidence               11357888888888777663                23344555555555555555433 23456665433     3


Q ss_pred             cceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         347 GEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       347 ~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .++++||++++||++++     |++|+|+++++
T Consensus       302 ~~~v~Ig~~~~I~a~s~-----V~~~v~~~~~~  329 (374)
T 2iu8_A          302 TGHICIADHVIMMAQTG-----VTKSITSPGIY  329 (374)
T ss_dssp             CSSCEECTTEEECTTCE-----ECSCBCSCEEE
T ss_pred             CCCcccCCCcEEccCce-----eecccCCCcEE
Confidence            45688999999999999     99999999875

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.94  E-value=2.4e-25  Score=198.54  Aligned_cols=200  Identities=21%  Similarity=0.357  Sum_probs=169.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccccc--------------------CCcEEEEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKK--------------------LGISLVFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~--------------------~~~~i~~~~~~~~~gt~~al~~   60 (380)
                      ||+|+|++|.++|+++|+|++++..+++++++.+....                    .+.++.+..+++..||+++++.
T Consensus        35 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~  114 (281)
T 3juk_A           35 LIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILT  114 (281)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEEecCCCCCcHHHHHH
Confidence            68999999999999999999999999999998762110                    2467888888899999999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCCC-----hHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECC--CC--ceeEEEeC
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDFP-----FKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNE--HG--CIESFIEK  129 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~~-----l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~--~~--~v~~~~ek  129 (380)
                      +++++.  +++|+|++||.+++.+     ++++++.|+++++ .++++...  +++..||++..++  ++  ++..|.||
T Consensus       115 a~~~l~--~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ek  191 (281)
T 3juk_A          115 GEALIG--NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEK  191 (281)
T ss_dssp             THHHHC--SSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEES
T ss_pred             HHHHcC--CCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEEC
Confidence            999995  5789999999999998     9999999998877 67777665  5678999999876  77  99999999


Q ss_pred             CC--CCCCCeEEEEEEEeCHhHHhhccCCCCCc-----ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhh
Q psy9164         130 PQ--EFVSNKINAGMYIFNPSVLDRIEIKPTSI-----EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNS  202 (380)
Q Consensus       130 ~~--~~~~~~~~~giyi~~~~~l~~l~~~~~~~-----~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~  202 (380)
                      |.  ...++++++|+|+|++++|+.+.....+.     ..++++.+.++++++++..+++|.++++|++|.+++..++..
T Consensus       192 p~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~  271 (281)
T 3juk_A          192 PNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK  271 (281)
T ss_dssp             CCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcceeEEEEEEECHHHHHHHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence            87  45678999999999999998876532211     256788888888999999999999999999999998877754


Q ss_pred             h
Q psy9164         203 L  203 (380)
Q Consensus       203 ~  203 (380)
                      -
T Consensus       272 ~  272 (281)
T 3juk_A          272 R  272 (281)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.93  E-value=5.5e-24  Score=188.35  Aligned_cols=197  Identities=20%  Similarity=0.357  Sum_probs=171.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|++|.++|+++|+|++++. .+++.+++.+ ...+++++.+..+++..||+++++.+.+++.  .++|++++||.
T Consensus        57 li~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~--~~~~lv~~~D~  133 (269)
T 4ecm_A           57 MIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS-GQEFGVSFTYRVQDKAGGIAQALGLCEDFVG--NDRMVVILGDN  133 (269)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEECSSCCCHHHHHHTTHHHHT--TSEEEEEETTE
T ss_pred             HHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh-ccccCceEEEeeCCccCcHHHHHHHHHHhcC--CCcEEEEeCCc
Confidence            689999999999999999999974 5788899876 4567888888888889999999999999995  67899999999


Q ss_pred             ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC--
Q psy9164          80 ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP--  157 (380)
Q Consensus        80 i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~--  157 (380)
                      +++.++.++++.|+++++++++++.+.+++..||++..+ ++++..|.|||....+.++++|+|+|++++|+.+....  
T Consensus       134 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d-~g~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~  212 (269)
T 4ecm_A          134 IFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ-NRKIIEIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPS  212 (269)
T ss_dssp             EESSCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEE-TTEEEEEEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBC
T ss_pred             cCccCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEc-CCEEEEEEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCC
Confidence            999999999999999888999999999999999999987 58999999999877889999999999999998775321  


Q ss_pred             --CCc-ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164         158 --TSI-EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       158 --~~~-~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                        ..+ ..++++.+.+++++..+..+++|.++++|++|.+++..++.
T Consensus       213 ~~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~  259 (269)
T 4ecm_A          213 ARGELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARD  259 (269)
T ss_dssp             TTSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTT
T ss_pred             CCCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHh
Confidence              112 24678888888899999999999999999999998766543

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.92  E-value=8.6e-25  Score=196.51  Aligned_cols=199  Identities=16%  Similarity=0.228  Sum_probs=166.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecC---------------CCCCCchHHHHhHHh
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYR-AEQMEDELTVETKKLGISLVFSHEN---------------EPLGTAGPLALAKDI   64 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~---------------~~~gt~~al~~a~~~   64 (380)
                      ||+|+|+++.++|+++|+|++++. .+++++++.+ ...++.++.+..++               +.+||+++++.++++
T Consensus        35 li~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~  113 (303)
T 3pnn_A           35 IMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILT-KYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDA  113 (303)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHH-HHTTTSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHH-HhccCCcEEEEecccccccccccccccccccCCcHHHHHHHHHh
Confidence            689999999999999999999998 4899999976 34456777777666               679999999999999


Q ss_pred             hCCCCCcEEEEeCCcccCCC-hHHHHHHHHh---cCCcEEEEEEEcCCC-Cce-----eEEEECCCCceeEEEeCCCC--
Q psy9164          65 LNKSQEPFFVLNSDIICDFP-FKDLVSFHKN---HGKEGTIVVTQVEEP-SKY-----GVVLYNEHGCIESFIEKPQE--  132 (380)
Q Consensus        65 i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~---~~~~~tl~~~~~~~~-~~~-----g~v~~d~~~~v~~~~ek~~~--  132 (380)
                      +   +++|+|++||.+++.+ +++++++|++   .++++++++.+.+++ ..|     |++..|++++|+.|.|||..  
T Consensus       114 i---~~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~  190 (303)
T 3pnn_A          114 I---REPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIER  190 (303)
T ss_dssp             C---CSCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTTSBEEEEEEEEEEEE
T ss_pred             c---CCCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeCCCCcEEEEEECCCCcc
Confidence            9   7899999999999887 9999999986   567899999998877 666     68888889999999999853  


Q ss_pred             -----------------CCCCeEEEEEEEeCHhHHhhccC-----------C--CCCcccchhhhhhcCC--cEEEEEec
Q psy9164         133 -----------------FVSNKINAGMYIFNPSVLDRIEI-----------K--PTSIEKEIFPLMSKEK--QLYAMELK  180 (380)
Q Consensus       133 -----------------~~~~~~~~giyi~~~~~l~~l~~-----------~--~~~~~~~il~~l~~~~--~i~~~~~~  180 (380)
                                       ..++++++|+|+|++++|+.+..           +  ......++++.+++++  ++.++...
T Consensus       191 ~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~  270 (303)
T 3pnn_A          191 TDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTT  270 (303)
T ss_dssp             ETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECS
T ss_pred             ccccccccccccccccCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeC
Confidence                             35789999999999999987742           1  1112245778888777  79999999


Q ss_pred             cEEEecCChhhHHHHHHHHHhhh
Q psy9164         181 GFWMDVGQPRDFLKGMCLYLNSL  203 (380)
Q Consensus       181 ~~~~~i~~~~~~~~a~~~~l~~~  203 (380)
                      ++|.++++|+++.+++..+....
T Consensus       271 g~w~dIgt~~dl~~a~~~l~~~~  293 (303)
T 3pnn_A          271 ARWFGVTYSDDRPGVVAKLRELT  293 (303)
T ss_dssp             CCCBCCSSGGGHHHHHHHHHHHH
T ss_pred             CceECCCCHHHHHHHHHHHHHHH
Confidence            99999999999999877665443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.92  E-value=1.3e-24  Score=193.21  Aligned_cols=166  Identities=17%  Similarity=0.223  Sum_probs=138.9

Q ss_pred             cccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-------------cCe
Q psy9164         208 PKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-------------EGC  273 (380)
Q Consensus       208 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~  273 (380)
                      +..+++.+.|.+++.|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|             .++
T Consensus        22 ~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v  101 (283)
T 4eqy_A           22 MSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRL  101 (283)
T ss_dssp             -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEE
T ss_pred             CcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceE
Confidence            34567777777778888888888888888888888888888888887 7999999999999999             479


Q ss_pred             EEcCCCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeeccee
Q psy9164         274 IIGWKCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDV  350 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v  350 (380)
                      .||+++.|+++|+|+.++..+  .+.||+++.|+.++.+..+++||++++++.++.+..++.+++ ..||.+++ +.+++
T Consensus       102 ~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~-V~~~v  180 (283)
T 4eqy_A          102 VIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSG-VHQYV  180 (283)
T ss_dssp             EECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCE-ECTTC
T ss_pred             EECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCE-EcCCe
Confidence            999999999999997654433  489999999999999988899999999999999988766555 45666644 47789


Q ss_pred             EecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         351 IVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       351 ~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +||++++|+++++     |++|+||++++
T Consensus       181 ~Ig~~~vvg~~s~-----V~~dvp~~~~~  204 (283)
T 4eqy_A          181 RIGAHSMLGGASA-----LVQDIPPFVIA  204 (283)
T ss_dssp             EECTTCEECTTCE-----ECSBBCTTEEE
T ss_pred             EECCCcEECCCCe-----EecccCCCcEE
Confidence            9999999999999     99999999875

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.92  E-value=1.2e-24  Score=191.72  Aligned_cols=163  Identities=19%  Similarity=0.296  Sum_probs=138.0

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-------------cCeEEc
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-------------EGCIIG  276 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~ig  276 (380)
                      +++.+.+++++.|++++.|+++|.|++++.||++|.|++++.|. ++.||++|.|++++.|             .++.||
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG   83 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   83 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence            45667777788888888888888888888999999999999997 8999999999999999             568999


Q ss_pred             CCCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEec
Q psy9164         277 WKCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       277 ~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~  353 (380)
                      +++.|+++++|+..+..+  .+.||+++.|+.++.+..++.||++++|+.++.+..++.+++. .||.++ ++.++++||
T Consensus        84 ~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a-~V~~~v~IG  162 (270)
T 1j2z_A           84 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLT-AIHQFVRIA  162 (270)
T ss_dssp             SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTC-EECTTCEEC
T ss_pred             CCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCC-EECCCcEeC
Confidence            999999999998765544  6889999999999998888888998888888888777655554 455554 456789999


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||++|+     |++|+||++++
T Consensus       163 ~~a~Ig~~s~-----V~~dvp~~~~~  183 (270)
T 1j2z_A          163 KGCMIAGKSA-----LGKDVPPYCTV  183 (270)
T ss_dssp             TTCEECTTCE-----ECSBBCTTEEE
T ss_pred             CceEEecCcE-----ecccCCCCeEE
Confidence            9999999999     99999999876

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.92  E-value=3.2e-24  Score=189.02  Aligned_cols=163  Identities=18%  Similarity=0.247  Sum_probs=136.6

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe--------------cCeEE
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL--------------EGCII  275 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------~~~~i  275 (380)
                      +++.+.|++++.|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|              .++.|
T Consensus         7 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~I   86 (266)
T 3r0s_A            7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVI   86 (266)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEE
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEE
Confidence            55666777777777888888888888888888888888888887 7999999999999999              58999


Q ss_pred             cCCCEECCceEEeeeeEe--cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeecceeEe
Q psy9164         276 GWKCVVGQWVRMENITVL--GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDVIV  352 (380)
Q Consensus       276 g~~~~ig~~~~i~~~~~~--~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v~i  352 (380)
                      |+++.|+++++|...+..  +.+.||+++.|+.++.+..++.||++++++.++.+..++.+++ .+||.+++ +.++++|
T Consensus        87 G~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~-V~~~v~I  165 (266)
T 3r0s_A           87 GKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTP-IHQFVKV  165 (266)
T ss_dssp             CTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCE-ECTTCEE
T ss_pred             CCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCE-ECCCcEE
Confidence            999999999999764432  3489999999999999988899999999999999887665555 45666544 4778999


Q ss_pred             cCceEEeceeeeccccccCCCCCCCcc
Q psy9164         353 QDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |++++|+++++     |++|+||++++
T Consensus       166 g~~a~Vg~~s~-----V~~dvp~~~~~  187 (266)
T 3r0s_A          166 GEGCMIAGASA-----LSQDIVPFCLA  187 (266)
T ss_dssp             CTTCEECSSCB-----BCSCBCTTEEE
T ss_pred             CCCCEEccCCe-----EecccCCCeEE
Confidence            99999999999     99999999876

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.92  E-value=5.8e-24  Score=186.80  Aligned_cols=163  Identities=20%  Similarity=0.186  Sum_probs=135.5

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe--------------cCeEE
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL--------------EGCII  275 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------~~~~i  275 (380)
                      +++.+.|++++.|++++.|++.+.|++++.||++|.|++++.|. ++.||++|.|++++.|              .++.|
T Consensus         3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~I   82 (259)
T 3hsq_A            3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVI   82 (259)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEE
T ss_pred             cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEE
Confidence            45667777777888888888888888888888888888888887 5999999999999998              45999


Q ss_pred             cCCCEECCceEEeeeeEe-cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeecceeEec
Q psy9164         276 GWKCVVGQWVRMENITVL-GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       276 g~~~~ig~~~~i~~~~~~-~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v~i~  353 (380)
                      |+++.|+++++|+..+.. +.+.||+++.|++++.+..++.||+++++++++.+..++.+++ ..||.+ +++.++++||
T Consensus        83 G~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-a~V~~~v~Ig  161 (259)
T 3hsq_A           83 GDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGL-VAVHQFCFVG  161 (259)
T ss_dssp             CSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSS-EEECTTCEEC
T ss_pred             CCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCC-CEECCCCEEC
Confidence            999999999999765542 3788999999999999888888898888888888877765555 445555 4557889999


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||++|+     |++|+||++++
T Consensus       162 ~~~~Vg~~s~-----V~~dvp~~~~~  182 (259)
T 3hsq_A          162 DYSMVAGLAK-----VVQDVPPYSTV  182 (259)
T ss_dssp             TTCEECSSEE-----ECSBBCTTEEE
T ss_pred             CCCEECCCCE-----EcccCCCCcEE
Confidence            9999999999     99999999876

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.91  E-value=7.3e-24  Score=186.90  Aligned_cols=164  Identities=19%  Similarity=0.252  Sum_probs=134.8

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-------------cCeEE
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-------------EGCII  275 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~i  275 (380)
                      .+++.+.+.+++.|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|             .++.|
T Consensus         9 ~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~I   88 (265)
T 4e6u_A            9 LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEI   88 (265)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEE
T ss_pred             eECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEE
Confidence            455666677777777777777777777788888888888888887 6999999999999999             47999


Q ss_pred             cCCCEECCceEEeeeeEe--cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeecceeEe
Q psy9164         276 GWKCVVGQWVRMENITVL--GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDVIV  352 (380)
Q Consensus       276 g~~~~ig~~~~i~~~~~~--~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v~i  352 (380)
                      |+++.|+++++|+.++..  +.+.||+++.|+.++.+..+++||++++++.++.+..++.+.+ .+||.+++ +.++++|
T Consensus        89 G~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~-V~~~v~I  167 (265)
T 4e6u_A           89 GNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSG-IHQFCKI  167 (265)
T ss_dssp             CSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCE-ECTTCEE
T ss_pred             CCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCE-ECCCcEE
Confidence            999999999999754332  2589999999999999988899999999999999887765555 45666644 4788999


Q ss_pred             cCceEEeceeeeccccccCCCCCCCcc
Q psy9164         353 QDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |++++|+++++     |++|+||++++
T Consensus       168 g~~~~i~~~sv-----V~~dvp~~~~~  189 (265)
T 4e6u_A          168 DSYSMIGGASL-----ILKDVPAYVMA  189 (265)
T ss_dssp             CTTCEECTTCE-----ECSBBCTTEEE
T ss_pred             CCCCEEcCCCE-----EcccCCCCeEE
Confidence            99999999999     99999999875

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.91  E-value=1.2e-23  Score=185.46  Aligned_cols=163  Identities=21%  Similarity=0.293  Sum_probs=131.3

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEEc
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCIIG  276 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ig  276 (380)
                      +++.+.+++++.|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|.             ++.||
T Consensus         8 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG   87 (262)
T 2qia_A            8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG   87 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEEC
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEEC
Confidence            44555566666666666677777777777777888888888886 78899999999999985             58999


Q ss_pred             CCCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeecceeEec
Q psy9164         277 WKCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       277 ~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v~i~  353 (380)
                      +++.|+++++|...+..+  .+.||++++|+.++.+..++.||+++++++++.+..++.+++ ..||.++ ++.++++||
T Consensus        88 ~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~-~I~~~v~Ig  166 (262)
T 2qia_A           88 DRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMT-AVHQFCIIG  166 (262)
T ss_dssp             SSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTC-EECTTCEEC
T ss_pred             CCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCC-EECCCCEEC
Confidence            999999999997654432  589999999999999988899999999999988887766555 4455554 456789999


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||++|+     |++|+||++++
T Consensus       167 ~~~~ig~~s~-----V~~~v~~~~~~  187 (262)
T 2qia_A          167 AHVMVGGCSG-----VAQDVPPYVIA  187 (262)
T ss_dssp             TTCEECSSCE-----ECSBBCTTEEE
T ss_pred             CCCEEccCCE-----ECCcCCCCeEE
Confidence            9999999999     99999999876

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.91  E-value=2.5e-23  Score=184.67  Aligned_cols=160  Identities=21%  Similarity=0.348  Sum_probs=103.6

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEec---------------eEEccCCEECCCcEe-cCe
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR---------------STILRDAIVKSHSWL-EGC  273 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i-~~~  273 (380)
                      .+.+.+.|.+++.|++++.|++++.|++++.||++|.|++++.|++               ++||++|.|++++.| .++
T Consensus        10 ~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~   89 (273)
T 3fs8_A           10 IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDT   89 (273)
T ss_dssp             EECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSC
T ss_pred             EECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCC
Confidence            3455556666666666666777777777777777777777777763               788888888888887 467


Q ss_pred             EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeec------------------
Q psy9164         274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP------------------  335 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~------------------  335 (380)
                      .||+++.|++++.|.     .++.||+++.|+.++.+..++.||+++.|++++.|++++.+.                  
T Consensus        90 ~Ig~~~~Ig~~~~I~-----~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~~~~  164 (273)
T 3fs8_A           90 IIGDNFQTGHKVTIR-----ENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPP  164 (273)
T ss_dssp             EECTTCEECSSCEEC-----SSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCSSSS
T ss_pred             EECCCCEECCceEEC-----CCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCCCCc
Confidence            788777777777773     244444444444444444444444444444444443332211                  


Q ss_pred             -----ceeecCc-----ceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         336 -----HKSIGSS-----LHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       336 -----~~~i~~~-----~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                           +.+||++     .+++.++++||++++|+++|+     |++|+||++++
T Consensus       165 ~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~Igagsv-----V~~dvp~~~~~  213 (273)
T 3fs8_A          165 SNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAV-----VTKDVPKETVV  213 (273)
T ss_dssp             CSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             ccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCE-----ECccCCCCcEE
Confidence                 2344443     244466788999999999999     99999999876

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.91  E-value=2.5e-23  Score=186.76  Aligned_cols=167  Identities=14%  Similarity=0.261  Sum_probs=106.9

Q ss_pred             cccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-----CeEEcCCCEE
Q psy9164         208 PKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-----GCIIGWKCVV  281 (380)
Q Consensus       208 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-----~~~ig~~~~i  281 (380)
                      +..+++.+.|++++.|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|.     ++.||+++.|
T Consensus         7 ~~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~I   86 (305)
T 3t57_A            7 EVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNII   86 (305)
T ss_dssp             --CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEE
T ss_pred             CCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEE
Confidence            34566777777777788888888888888888888888888888886 78888888888888886     4888888888


Q ss_pred             CCceEEeeeeE--------ecceEECccceeCcceEE------------------ccceEECCCeEECcceEEcCCeee-
Q psy9164         282 GQWVRMENITV--------LGECIIGWKCVVGQWVRM------------------ENITVLGEDVIVQDELYVNGGQVL-  334 (380)
Q Consensus       282 g~~~~i~~~~~--------~~~~~ig~~~~ig~~~~i------------------~~~~~ig~~~~ig~~~~i~~~~v~-  334 (380)
                      ++++.|+..+.        .....||+++.|++++.|                  ..++.|+++++||+++++++++.+ 
T Consensus        87 g~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~  166 (305)
T 3t57_A           87 GHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLA  166 (305)
T ss_dssp             CTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred             CCccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccC
Confidence            88888743211        011333443333333333                  222222333333333333332221 


Q ss_pred             cceeecCc-----ceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         335 PHKSIGSS-----LHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       335 ~~~~i~~~-----~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++.+||++     .+.+.++++||++++||++|+     |++|+||++++
T Consensus       167 g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~-----V~~dvp~~~~~  211 (305)
T 3t57_A          167 GHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSV-----VSQDVPKYMMV  211 (305)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECTTCEECTTCE-----ECSBBCTTEEE
T ss_pred             CCCEECCceEEcCCCEEcCCeEECCCCEEcCCCe-----EcccCCCCeEE
Confidence            22344443     233456688999999999999     99999999876

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.90  E-value=1.9e-22  Score=183.81  Aligned_cols=166  Identities=18%  Similarity=0.277  Sum_probs=106.3

Q ss_pred             ccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-cCeEEcCCCEECCceE
Q psy9164         209 KLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVR  286 (380)
Q Consensus       209 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~  286 (380)
                      ..+++.+.+.+++.|++++.|++++.|++++.||++|.|++++.|+ ++.||++|.|++++.| .++.||++|.|++++.
T Consensus        98 ~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~  177 (341)
T 3eh0_A           98 QNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTV  177 (341)
T ss_dssp             CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCE
T ss_pred             CccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcE
Confidence            3456666666777777777777777777777777777777777774 6777777777777777 5677777777777777


Q ss_pred             Eeee--------------eEecceEECccceeCcceEEc----------------cceEECCCeEECcceEEcCCee-ec
Q psy9164         287 MENI--------------TVLGECIIGWKCVVGQWVRME----------------NITVLGEDVIVQDELYVNGGQV-LP  335 (380)
Q Consensus       287 i~~~--------------~~~~~~~ig~~~~ig~~~~i~----------------~~~~ig~~~~ig~~~~i~~~~v-~~  335 (380)
                      |+..              ...++++||+++.||+++.|.                +++.|++++.||+++++++++. .+
T Consensus       178 I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g  257 (341)
T 3eh0_A          178 VGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAG  257 (341)
T ss_dssp             EEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECC
Confidence            7431              012456666666666555542                2333333344444444444332 23


Q ss_pred             ceeecCcce-----eecceeEecCceEEeceeeeccccccCCCC-CCCcc
Q psy9164         336 HKSIGSSLH-----MLGEDVIVQDELYVNGGQVLPHKSIGSSVP-EPQII  379 (380)
Q Consensus       336 ~~~i~~~~~-----~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp-~~~iv  379 (380)
                      +.+||+++.     .+.++++||++++|+++++     |++|+| +++++
T Consensus       258 ~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~-----V~~~v~~~~~~~  302 (341)
T 3eh0_A          258 SLKIGRYCMIGGASVINGHMEICDKVTVTGMGM-----VMRPITEPGVYS  302 (341)
T ss_dssp             TEEECTTCEECTTCEECSSEEECSSEEECTTCE-----ECSCBCSCEEEE
T ss_pred             CcEECCCcEEcCCCEECCCCEECCCCEEeeCCE-----ECCCcCCCCeEE
Confidence            345555433     3456778999999999999     999998 77654

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.90  E-value=3.4e-22  Score=179.98  Aligned_cols=197  Identities=19%  Similarity=0.348  Sum_probs=163.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc---------------------cCCcEEEEeecCCCCCCchHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK---------------------KLGISLVFSHENEPLGTAGPLA   59 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~---------------------~~~~~i~~~~~~~~~gt~~al~   59 (380)
                      ||+|+|++|.++|+++|+|+++++.+++++|+.+.+.                     ..+.++.+..+++.+||+++++
T Consensus        41 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~  120 (302)
T 2e3d_A           41 LIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVL  120 (302)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceEEeeCCccCCHHHHHH
Confidence            6899999999999999999999999999999875210                     1367788888888999999999


Q ss_pred             HhHHhhCCCCCcEEEEeCCcccCC--------ChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEEC----CCC---cee
Q psy9164          60 LAKDILNKSQEPFFVLNSDIICDF--------PFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN----EHG---CIE  124 (380)
Q Consensus        60 ~a~~~i~~~~~~~lv~~gD~i~~~--------~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d----~~~---~v~  124 (380)
                      .+.+++.  +++|++++||.+++.        +++++++.|++.++ .++++.+.+++..||++..+    +++   ++.
T Consensus       121 ~a~~~~~--~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~yg~v~~~~~~~~~g~~~~v~  197 (302)
T 2e3d_A          121 CAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVADVTAYGVVDCKGVELAPGESVPMV  197 (302)
T ss_dssp             HTHHHHC--SSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEECSCGGGSEEEECTTCCCCTTCEEEEC
T ss_pred             HHHHHcC--CCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEccCCCCccEEEecccccCCCCceeEE
Confidence            9999995  578999999998772        79999999988776 78888888888899998864    456   899


Q ss_pred             EEEeCCC--CCCCCeEEEEEEEeCHhHHhhccCCCC----Cc-ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHH
Q psy9164         125 SFIEKPQ--EFVSNKINAGMYIFNPSVLDRIEIKPT----SI-EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       125 ~~~ek~~--~~~~~~~~~giyi~~~~~l~~l~~~~~----~~-~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~  197 (380)
                      .|.|||.  ...+.+.++|+|+|++++|+.+.....    .+ ..++++.++++++++++..+++|.|+++|++|.+++.
T Consensus       198 ~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~  277 (302)
T 2e3d_A          198 GVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFV  277 (302)
T ss_dssp             EEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHH
T ss_pred             EEEECCCCCccccceEEEEEEEECHHHHHHHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHH
Confidence            9999986  455789999999999999988754221    11 2457788877779999999999999999999999975


Q ss_pred             HHH
Q psy9164         198 LYL  200 (380)
Q Consensus       198 ~~l  200 (380)
                      .++
T Consensus       278 ~~~  280 (302)
T 2e3d_A          278 EYG  280 (302)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.90  E-value=3.9e-22  Score=175.73  Aligned_cols=196  Identities=25%  Similarity=0.451  Sum_probs=160.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc-cCCcE-------------------EEEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-KLGIS-------------------LVFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-~~~~~-------------------i~~~~~~~~~gt~~al~~   60 (380)
                      ||+|+|++|.++|+++|+|++++..+++++++.+... ..++.                   +.+..+....||+++++.
T Consensus        35 li~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~  114 (259)
T 1tzf_A           35 ILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKR  114 (259)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccccccceeeeeccccccceeeeecccccCcHHHHHH
Confidence            6899999999999999999999999999999875210 01122                   223344567899999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEE
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA  140 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~  140 (380)
                      +++++. ..++|++++||.+++.+++++++.|++.++.+|+..  .+++..||++..+ ++++..|.|||... ..++++
T Consensus       115 a~~~~~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~~g~v~~~-~g~v~~~~ekp~~~-~~~~~~  189 (259)
T 1tzf_A          115 VAEYVK-DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTA--TFPPGRFGALDIQ-AGQVRSFQEKPKGD-GAMING  189 (259)
T ss_dssp             TGGGTT-TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEE--ECCCCCSEEEEEE-TTEEEEEEESCSCC-SCCEEC
T ss_pred             HHHhcC-CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEE--ecCCCCccEEEEc-CCEEEEEEecCCCC-CceEEE
Confidence            999983 257899999999999999999999988887777644  3467789998887 88999999998643 568999


Q ss_pred             EEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164         141 GMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       141 giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                      |+|+|++++|+.+.....+++.++++.++++++++++..+++|.+++++++|.+++..+..
T Consensus       190 Giy~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~  250 (259)
T 1tzf_A          190 GFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             CCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred             EEEEeCHHHHHhhcccccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhc
Confidence            9999999999888655455667888888888899999999999999999999998776553

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.89  E-value=3.2e-21  Score=172.21  Aligned_cols=196  Identities=20%  Similarity=0.352  Sum_probs=163.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEc-cCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAV-SYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~-~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|+.|..+|+++|+|++ ++..+++++++.+ .+++++++.+..++...|++++++.+.+++.  +++++++.||.
T Consensus        35 li~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~  111 (293)
T 1fxo_A           35 MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAVQPSPDGLAQAFLIGESFIG--NDLSALVLGDN  111 (293)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEECSSCCCGGGHHHHTHHHHT--TSEEEEEETTE
T ss_pred             HHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc-ccccCceEEEeeCCCCCCHHHHHHHHHHHhC--CCCEEEEECCh
Confidence            799999999999999999887 4578899999976 4557888888888889999999999999995  57899999998


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC-
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP-  157 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~-  157 (380)
                       +.+.++.++++.|.+++..++++..+++++.+||++.+|+++++..|.|||..+.+++.++|+|+|++++++.+..-. 
T Consensus       112 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~  191 (293)
T 1fxo_A          112 LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKP  191 (293)
T ss_dssp             EEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCC
T ss_pred             hccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCCCcEEEEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCc
Confidence             456789999999987777788888888999999999999899999999999877788999999999999987764211 


Q ss_pred             ---CCc-ccchhhhhhcCCcEEEEEec-c-EEEecCChhhHHHHHHHH
Q psy9164         158 ---TSI-EKEIFPLMSKEKQLYAMELK-G-FWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       158 ---~~~-~~~il~~l~~~~~i~~~~~~-~-~~~~i~~~~~~~~a~~~~  199 (380)
                         ..+ ..++++.+.+.+++..+... + .|.|++++++|.++...+
T Consensus       192 ~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~  239 (293)
T 1fxo_A          192 SPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFI  239 (293)
T ss_dssp             CTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHH
T ss_pred             ccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHH
Confidence               112 24577777788888877775 6 499999999999886544

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.89  E-value=3.1e-22  Score=183.80  Aligned_cols=164  Identities=18%  Similarity=0.232  Sum_probs=81.8

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-CeEEcCCCEECCceEE
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRM  287 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i  287 (380)
                      .+++.+.+.+++.|++++.|++++.|++++.||++|.|++++.|+ ++.||++|.|++++.|. ++.||++|.|++++.|
T Consensus       121 ~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~I  200 (372)
T 3pmo_A          121 GIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVI  200 (372)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEE
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcEE
Confidence            344444444444444444444444444444444444444444443 44444444444444442 2445555555555444


Q ss_pred             eee--------------eEecceEECccceeCcceEE----------------------ccceEECCCeEECcceEEcCC
Q psy9164         288 ENI--------------TVLGECIIGWKCVVGQWVRM----------------------ENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       288 ~~~--------------~~~~~~~ig~~~~ig~~~~i----------------------~~~~~ig~~~~ig~~~~i~~~  331 (380)
                      +..              .+.++++||+++.||+++.|                      ..++.||++++|+.++.|..+
T Consensus       201 g~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~  280 (372)
T 3pmo_A          201 GGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGS  280 (372)
T ss_dssp             EECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             ecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            310              00124555555555555444                      333333333333333333332


Q ss_pred             eeecc-eeecCcceeecceeEecCceEEeceeeeccccccCCC-CCCCcc
Q psy9164         332 QVLPH-KSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSV-PEPQII  379 (380)
Q Consensus       332 ~v~~~-~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~v-p~~~iv  379 (380)
                      +.+++ .+||.+ +.+.++++||++++|+++++     |++|+ |+++++
T Consensus       281 v~IG~~~~Ig~~-a~V~~~v~Ig~~~vI~a~s~-----V~k~v~~~~~~~  324 (372)
T 3pmo_A          281 AKIGRHCMLAGG-VGLVGHIEICDNVFVTGMTM-----VTRSITEPGSYS  324 (372)
T ss_dssp             CEECSSCEECTT-CEECSSCEECSSEEECTTCE-----ECSCBCSCEEEC
T ss_pred             CEECCCeEEeCC-CEECCCCEECCCCEEeeCCE-----EccCcCCCCcEE
Confidence            22222 223333 33466788999999999999     99999 888765

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.89  E-value=1.6e-21  Score=174.19  Aligned_cols=197  Identities=22%  Similarity=0.364  Sum_probs=164.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVS-YRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|+.|..+|+++|+|+++ ++.+.+++++.+ .+++++++.+..++...|++++++.+.+++.  +++++++.||.
T Consensus        36 li~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~  112 (296)
T 1mc3_A           36 MIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAEQPSPDGLAQAFIIGETFLN--GEPSCLVLGDN  112 (296)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEECSSCCCSTHHHHHTHHHHT--TSCEEEEETTE
T ss_pred             HHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc-ccccCceEEEeccCCCCCHHHHHHHHHHHhC--CCCEEEEECCc
Confidence            7999999999999999999886 678899999976 4556888888888888999999999999995  57888888997


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC-
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP-  157 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~-  157 (380)
                       +.+.++.++++.|.+.+..++++..+.++|.+||++.+|+++++..|.|||....++++++|+|+|++++++.+..-. 
T Consensus       113 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~  192 (296)
T 1mc3_A          113 IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKP  192 (296)
T ss_dssp             EEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCC
T ss_pred             cccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCc
Confidence             457789999999987777788888888999999999999899999999999877788999999999999988774321 


Q ss_pred             ---CCc-ccchhhhhhcCCcEEEEEec-cE-EEecCChhhHHHHHHHHH
Q psy9164         158 ---TSI-EKEIFPLMSKEKQLYAMELK-GF-WMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       158 ---~~~-~~~il~~l~~~~~i~~~~~~-~~-~~~i~~~~~~~~a~~~~l  200 (380)
                         ..+ ..++++.+.+.+++..+... ++ |.|++|+++|.++...+.
T Consensus       193 ~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~  241 (296)
T 1mc3_A          193 SERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ  241 (296)
T ss_dssp             CSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred             cccCCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence               111 14567777777888777775 74 999999999999865544

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.89  E-value=5.5e-22  Score=181.47  Aligned_cols=165  Identities=15%  Similarity=0.222  Sum_probs=100.3

Q ss_pred             cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-cCeEEcCCCEECCceEE
Q psy9164         210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRM  287 (380)
Q Consensus       210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~i  287 (380)
                      .+++.+.+++++.+++++.|++++.|++++.||++|.|+++|.|+ ++.||++|.|++++.| .++.||++|.|++++.|
T Consensus       104 ~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I  183 (357)
T 4e79_A          104 GIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVI  183 (357)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             eeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEE
Confidence            445555666666666666666666666666666666666666665 6677777777777776 45777777777777777


Q ss_pred             eee--------------eEecceEECccceeCcceEEc----cceEECC------------CeEECcceEEcCCee-ecc
Q psy9164         288 ENI--------------TVLGECIIGWKCVVGQWVRME----NITVLGE------------DVIVQDELYVNGGQV-LPH  336 (380)
Q Consensus       288 ~~~--------------~~~~~~~ig~~~~ig~~~~i~----~~~~ig~------------~~~ig~~~~i~~~~v-~~~  336 (380)
                      +..              .+.+.++||+++.||+++.|.    ..+.||+            ++.||+++++++++. .++
T Consensus       184 g~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~  263 (357)
T 4e79_A          184 GGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGS  263 (357)
T ss_dssp             SCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCC
Confidence            431              012356666666666665553    2233333            333333333333332 223


Q ss_pred             eeecCccee-----ecceeEecCceEEeceeeeccccccCCC-CCCCcc
Q psy9164         337 KSIGSSLHM-----LGEDVIVQDELYVNGGQVLPHKSIGSSV-PEPQII  379 (380)
Q Consensus       337 ~~i~~~~~~-----~~~~v~i~~~~~i~~~~v~p~~~v~~~v-p~~~iv  379 (380)
                      .+||+++.+     +.++++||++++|+++++     |++|+ |+++++
T Consensus       264 v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~-----V~~~v~~~~~~~  307 (357)
T 4e79_A          264 TKIGKNCILAGACGVAGHLSIADNVTLTGMSM-----VTKNISEAGTYS  307 (357)
T ss_dssp             CEECTTCEECTTCEECSSCEECSSEEECTTCE-----ECSCBCSCEEEE
T ss_pred             cEECCCCEECcCCEECCCeEECCCCEEeecCE-----EcCccCCCCcEE
Confidence            455555433     345577889999988888     89999 887654

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.89  E-value=3.9e-21  Score=171.59  Aligned_cols=197  Identities=19%  Similarity=0.359  Sum_probs=163.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVS-YRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|+.|..+|+++|+|+++ ++.+++++++.+ .+++++++.+..++...|++++++.+.+++.  +++++++.||.
T Consensus        36 li~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~-g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~  112 (295)
T 1lvw_A           36 MIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRVQEEPRGIADAFIVGKDFIG--DSKVALVLGDN  112 (295)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEECSSCCCGGGHHHHTHHHHT--TSCEEEEETTC
T ss_pred             HHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh-ccccCceEEEeeCCCCCChHHHHHHHHHHhC--CCcEEEEECCc
Confidence            7999999999999999999886 678899999976 4557888888888888999999999999995  57898888998


Q ss_pred             c-cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC-
Q psy9164          80 I-CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP-  157 (380)
Q Consensus        80 i-~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~-  157 (380)
                      + .+.++.++++.|.+.+..++++..+++++.+||++.+|+++++..|.|||....+++.++|+|+|++++++.+..-. 
T Consensus       113 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~  192 (295)
T 1lvw_A          113 VFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEP  192 (295)
T ss_dssp             CEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCC
T ss_pred             cccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCC
Confidence            4 57889999999987777788888888999999999999999999999999777788999999999999987763211 


Q ss_pred             ---CCc-ccchhhhhhcCCcEEEEEec-cE-EEecCChhhHHHHHHHHH
Q psy9164         158 ---TSI-EKEIFPLMSKEKQLYAMELK-GF-WMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       158 ---~~~-~~~il~~l~~~~~i~~~~~~-~~-~~~i~~~~~~~~a~~~~l  200 (380)
                         ..+ ..++++.+.+.+++..+... ++ |.|++|+++|.++...+.
T Consensus       193 ~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~  241 (295)
T 1lvw_A          193 SDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE  241 (295)
T ss_dssp             CTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred             cccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence               111 24567777777877777775 64 999999999998865443

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.88  E-value=9e-22  Score=180.04  Aligned_cols=80  Identities=13%  Similarity=0.192  Sum_probs=38.1

Q ss_pred             CeEEcCCCEECCceEEeeee-----Ee------cceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-cceee
Q psy9164         272 GCIIGWKCVVGQWVRMENIT-----VL------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKSI  339 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~-----~~------~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i  339 (380)
                      +++||++|.||++++|..+.     ..      .++.|++++.||+++.+..++.|..++.||++|+|++++++ ++.+|
T Consensus       205 ~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~I  284 (357)
T 4e79_A          205 SVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSI  284 (357)
T ss_dssp             CEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred             cEEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEE
Confidence            45666666666666664211     11      12222333333333333333333344555666666655533 34566


Q ss_pred             cCcceeecceeE
Q psy9164         340 GSSLHMLGEDVI  351 (380)
Q Consensus       340 ~~~~~~~~~~v~  351 (380)
                      |+++++.+.+++
T Consensus       285 g~~~vv~g~s~V  296 (357)
T 4e79_A          285 ADNVTLTGMSMV  296 (357)
T ss_dssp             CSSEEECTTCEE
T ss_pred             CCCCEEeecCEE
Confidence            666666555544

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.88  E-value=1.5e-21  Score=177.92  Aligned_cols=16  Identities=25%  Similarity=0.495  Sum_probs=9.4

Q ss_pred             eEEcCCCEECCceEEe
Q psy9164         273 CIIGWKCVVGQWVRME  288 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~  288 (380)
                      ++||+++.||++++|.
T Consensus       201 v~IGd~v~Ig~~~~I~  216 (341)
T 3eh0_A          201 VIIGDRVEIGACTTID  216 (341)
T ss_dssp             EEECSSCEECTTCEEE
T ss_pred             EEECCCcEECCccEee
Confidence            5566666666666553

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.88  E-value=2e-21  Score=178.44  Aligned_cols=81  Identities=16%  Similarity=0.257  Sum_probs=43.2

Q ss_pred             CeEEcCCCEECCceEEeee-----eEe------cceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-cceee
Q psy9164         272 GCIIGWKCVVGQWVRMENI-----TVL------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKSI  339 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~-----~~~------~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i  339 (380)
                      +++||++|.||++++|...     ...      .++.|++++.||+++.+..++.|..++.||++|+|++++++ ++.+|
T Consensus       222 ~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~I  301 (372)
T 3pmo_A          222 GVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEI  301 (372)
T ss_dssp             CEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEE
T ss_pred             CeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEE
Confidence            4666666666666666311     111      23344444455555555555555556666666666665533 33456


Q ss_pred             cCcceeecceeEe
Q psy9164         340 GSSLHMLGEDVIV  352 (380)
Q Consensus       340 ~~~~~~~~~~v~i  352 (380)
                      |+++++.+.+++.
T Consensus       302 g~~~vI~a~s~V~  314 (372)
T 3pmo_A          302 CDNVFVTGMTMVT  314 (372)
T ss_dssp             CSSEEECTTCEEC
T ss_pred             CCCCEEeeCCEEc
Confidence            6665555555443

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.88  E-value=7.5e-22  Score=177.27  Aligned_cols=198  Identities=22%  Similarity=0.356  Sum_probs=143.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc-------------------ccCCcEEEEeecCCCCCCchHHHHh
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET-------------------KKLGISLVFSHENEPLGTAGPLALA   61 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~-------------------~~~~~~i~~~~~~~~~gt~~al~~a   61 (380)
                      ||+|+|++|.++|+++|+|++++..+++.+++.+.+                   ...+.++.+..+++.+||+++++.+
T Consensus        47 li~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a  126 (297)
T 2ux8_A           47 LIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCA  126 (297)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHH
Confidence            689999999999999999999999999999986521                   0135667777788889999999999


Q ss_pred             HHhhCCCCCcEEEEeCCcccC---CChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECC--CC--ceeEEEeCCC-
Q psy9164          62 KDILNKSQEPFFVLNSDIICD---FPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNE--HG--CIESFIEKPQ-  131 (380)
Q Consensus        62 ~~~i~~~~~~~lv~~gD~i~~---~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~--~~--~v~~~~ek~~-  131 (380)
                      ++++.  +++|++++||.+++   .+++++++.|++.++ .++.+.+.  +++..||++..++  ++  ++..|.|||. 
T Consensus       127 ~~~~~--~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~  203 (297)
T 2ux8_A          127 RDIVG--DEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAP  203 (297)
T ss_dssp             HHHHC--SSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------
T ss_pred             HHHcC--CCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCC
Confidence            99995  57899999999876   569999999988765 56655544  4667898887653  45  8999999985 


Q ss_pred             -CCCCCeEEEEEEEeCHhHHhhccCCCC----Cc-ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164         132 -EFVSNKINAGMYIFNPSVLDRIEIKPT----SI-EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       132 -~~~~~~~~~giyi~~~~~l~~l~~~~~----~~-~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                       ...+.+.++|+|+|++++|+.+.....    .+ ..++++.++++++++++..+++|.+++++++|.+++..++.
T Consensus       204 ~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~  279 (297)
T 2ux8_A          204 GTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVAL  279 (297)
T ss_dssp             -----CCCEEEEEEECTHHHHHHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHH
T ss_pred             CCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHh
Confidence             345678999999999999887743211    11 24678888888899999999999999999999999765553

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.86  E-value=5.9e-21  Score=173.22  Aligned_cols=197  Identities=16%  Similarity=0.267  Sum_probs=157.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc--------------------cCCcEEEEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK--------------------KLGISLVFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~--------------------~~~~~i~~~~~~~~~gt~~al~~   60 (380)
                      ||+|+|++|.++|+++|+|++++..+++.+++.+...                    ..+.++.+..+++..||+++++.
T Consensus        45 li~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~  124 (323)
T 2pa4_A           45 GIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGL  124 (323)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEEEeCCccCCcHHHHHH
Confidence            6899999999999999999999999999998864210                    02467777777888999999999


Q ss_pred             hHHhhCCCCCc--EEEEeCCcccC--CChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEEC----CCC--ceeEEEe
Q psy9164          61 AKDILNKSQEP--FFVLNSDIICD--FPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYN----EHG--CIESFIE  128 (380)
Q Consensus        61 a~~~i~~~~~~--~lv~~gD~i~~--~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d----~~~--~v~~~~e  128 (380)
                      +.+++.  +++  |+|++||.+++  .+++++++.|++.++ .++.+.+.  +++..||++..+    +++  ++..|.|
T Consensus       125 a~~~l~--~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~E  201 (323)
T 2pa4_A          125 AESVLD--DDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVE  201 (323)
T ss_dssp             TGGGSC--SSCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEE
T ss_pred             HHHHhc--CCCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEE
Confidence            999985  355  99999999776  679999999988765 46666655  356789998876    454  8999999


Q ss_pred             CCC--CCCCCeEEEEEEEeCHhHHhhccCCCC----Cc-ccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHHHHHHH
Q psy9164         129 KPQ--EFVSNKINAGMYIFNPSVLDRIEIKPT----SI-EKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       129 k~~--~~~~~~~~~giyi~~~~~l~~l~~~~~----~~-~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a~~~~l  200 (380)
                      ||.  ...+.+.++|+|+|++++|+.+.....    .+ ..++++.++++ .+++++..+++|.++++|++|.+++..++
T Consensus       202 kp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~  281 (323)
T 2pa4_A          202 KPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFG  281 (323)
T ss_dssp             SCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHH
T ss_pred             CCCCccccccEEEEEEEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHh
Confidence            984  455678999999999999988743221    12 14678888877 68999999999999999999999875544

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.86  E-value=4.2e-21  Score=161.03  Aligned_cols=93  Identities=12%  Similarity=0.181  Sum_probs=57.5

Q ss_pred             ccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEc---------------cceEECCCeEE
Q psy9164         259 LRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRME---------------NITVLGEDVIV  322 (380)
Q Consensus       259 ~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~---------------~~~~ig~~~~i  322 (380)
                      |++|.|++++.|.+ +.||++|.|++++.|     .+++.||+++.||+++.+.               ..++||+++||
T Consensus        37 G~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I-----~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~I  111 (192)
T 3mqg_A           37 GEGCSLGQNVFVGNRVRIGNRVKIQNNVSV-----YDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATL  111 (192)
T ss_dssp             CTTCEECTTCEECSSCEECSSCEECTTCEE-----CTTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEE
T ss_pred             CCCCEECCCEEECCceEECCCcEEcCCcEE-----eCCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEE
Confidence            33444443333322 455555555555555     2345555555555555443               34677777777


Q ss_pred             CcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         323 QDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       323 g~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |+++.|                  .++++||++++|+++++     |++|+|+++++
T Consensus       112 G~~~~I------------------~~g~~Ig~~~~Igagsv-----V~~~vp~~~v~  145 (192)
T 3mqg_A          112 GANCTV------------------VCGATIGRYAFVGAGAV-----VNKDVPDFALV  145 (192)
T ss_dssp             CTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             CCCCEE------------------CCCCEECCCCEEcCCCE-----ECcccCCCCEE
Confidence            777777                  55677888888888888     88888888765

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.84  E-value=1.6e-20  Score=164.22  Aligned_cols=187  Identities=16%  Similarity=0.212  Sum_probs=142.1

Q ss_pred             CHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHccccccCCc--EEEEeecCCCCCCchHHHHhHHhhC----CCCCcEE
Q psy9164           1 MLLHQIEALVE-AGVREVILAVSYRAEQMEDELTVETKKLGI--SLVFSHENEPLGTAGPLALAKDILN----KSQEPFF   73 (380)
Q Consensus         1 li~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~--~i~~~~~~~~~gt~~al~~a~~~i~----~~~~~~l   73 (380)
                      ||+|+|++|.+ +|++++++++++..+ +++++.+..+.++.  ...+..+++.+||+++++++++++.    +.+++|+
T Consensus        32 li~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~l  110 (255)
T 4evw_A           32 LFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSIT  110 (255)
T ss_dssp             HHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEEEESSCCSSHHHHHHHHHHHHHHTTCCCCSCEE
T ss_pred             HHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEEEeCCCCCCHHHHHHHHHHHHhhcccCCCCcEE
Confidence            68999999999 799999999999766 55555542222221  1235567889999999999999982    2267899


Q ss_pred             EEeCCccc-CCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCC--ceeEEEeCCCCCCCCeEEEEEEEeCHhH-
Q psy9164          74 VLNSDIIC-DFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG--CIESFIEKPQEFVSNKINAGMYIFNPSV-  149 (380)
Q Consensus        74 v~~gD~i~-~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~giyi~~~~~-  149 (380)
                      |++||.++ +.++.++     .++++.++++.+.+++ +||++..|+++  +|++|.||+  ..++++++|+|+|++.. 
T Consensus       111 V~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~p-~yG~v~~d~~g~~~V~~i~EK~--~~s~~~~~GiY~f~~~~~  182 (255)
T 4evw_A          111 VFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGGD-NWSFAKPEHAGSTKVIQTAEKN--PISDLCSTGLYHFNRKED  182 (255)
T ss_dssp             ECCTTEECTTCCCCGG-----GGSSSEEEEEEECCSS-CSCEEEESSTTCCBEEEEESSS--CSSSEEEEEEEEESCHHH
T ss_pred             EEeCCEEEecchhHHH-----hhcCCcEEEEEecCCC-ceeEEEECCCCCeEEEEEEecc--CccCcEEEeEEEECcHHH
Confidence            99999988 6667653     2456788988888776 99999999888  999999993  35789999999999862 


Q ss_pred             H-----hhccCC------CCCcccchhhhhhcCC-cEEEEEec-cEEEecCChhhHHHHH
Q psy9164         150 L-----DRIEIK------PTSIEKEIFPLMSKEK-QLYAMELK-GFWMDVGQPRDFLKGM  196 (380)
Q Consensus       150 l-----~~l~~~------~~~~~~~il~~l~~~~-~i~~~~~~-~~~~~i~~~~~~~~a~  196 (380)
                      |     +.+...      ......++++.+++++ ++.++..+ ++|.++|+|++|.++.
T Consensus       183 ~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~  242 (255)
T 4evw_A          183 YLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFL  242 (255)
T ss_dssp             HHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHH
Confidence            2     223221      1123356888888776 68888885 8999999999998764

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.84  E-value=6.4e-21  Score=179.21  Aligned_cols=243  Identities=14%  Similarity=0.205  Sum_probs=160.1

Q ss_pred             CCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe----CCcccCCChHHHHHHHHhc--C---------CcEEEEE
Q psy9164          39 LGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN----SDIICDFPFKDLVSFHKNH--G---------KEGTIVV  103 (380)
Q Consensus        39 ~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~----gD~i~~~~l~~~l~~h~~~--~---------~~~tl~~  103 (380)
                      ++..+++..++.+++|+.+++.+.+.+   .+ ++|++    +|...+++|..+...|+++  +         ...++.+
T Consensus       111 ~g~~vt~~~~~~pL~~a~~i~~~d~~~---~~-t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L  186 (496)
T 3c8v_A          111 KGQHFVCDGKMIPLHDDEVITIKDSFL---NK-TLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDL  186 (496)
T ss_dssp             TTCEEEETTEEEECSSCCEEEEESCEE---ES-CEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEES
T ss_pred             cCCEEEEEecccchhHhhhHHhhhhcC---Cc-eEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeH
Confidence            578899999999999999976665555   22 37888    6888888888888887763  2         2345555


Q ss_pred             EEcCCC--CceeEEEECCCCceeEEEeCCCCC--CCCeEEEEEEEeCHhHHhhccC--CCCCcccchhhhhhcCCcEEEE
Q psy9164         104 TQVEEP--SKYGVVLYNEHGCIESFIEKPQEF--VSNKINAGMYIFNPSVLDRIEI--KPTSIEKEIFPLMSKEKQLYAM  177 (380)
Q Consensus       104 ~~~~~~--~~~g~v~~d~~~~v~~~~ek~~~~--~~~~~~~giyi~~~~~l~~l~~--~~~~~~~~il~~l~~~~~i~~~  177 (380)
                      ..+.++  ..++.+.   .+++..+.++|.+.  .++.....+|.|+++.++.+..  .....                 
T Consensus       187 ~~l~d~li~~~~~~~---~g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~l~~~~~~n~-----------------  246 (496)
T 3c8v_A          187 STIHNSVVRYFSYVQ---TGELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKYISQEAGSCP-----------------  246 (496)
T ss_dssp             CEEESCEECTTCEEE---SSEEESCEECTTEEEEECTTSEEEEEECCHHHHTTTCBCCTTSCC-----------------
T ss_pred             HHHHHHHHHHHhhhc---CCceEEeeecCCceecccccccceEEEcCHHHHHHHHhhccCccc-----------------
Confidence            566666  5666552   46676677776531  2233345699999988865421  11010                 


Q ss_pred             EeccEEEec--CChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEec
Q psy9164         178 ELKGFWMDV--GQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR  255 (380)
Q Consensus       178 ~~~~~~~~i--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~  255 (380)
                        .+.|.++  ..++++.+..    ....            ......+++++.|++++.+.+++.||++|.|++++.|.+
T Consensus       247 --~g~~~Dll~~~~~d~~~i~----~~~~------------~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~  308 (496)
T 3c8v_A          247 --TGVLMEFVEVRQEDFEEVF----ASGH------------MASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDN  308 (496)
T ss_dssp             --BSHHHHHHHTTTHHHHHHH----HC--------------------CCTTCEECTTSEEESSCEECTTCEECTTCEEEE
T ss_pred             --cceeeehhccchHHHHHHh----hccc------------cccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEec
Confidence              1112111  1223332210    0000            111234455666666666666777888888888888888


Q ss_pred             eEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccc----eEECCCeEECcceEEc
Q psy9164         256 STILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI----TVLGEDVIVQDELYVN  329 (380)
Q Consensus       256 ~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~----~~ig~~~~ig~~~~i~  329 (380)
                      ++||++|.|+++|.|.+++||++|.|++++.+      .+++||++++||.++.+..+    ++||++++||+++.|.
T Consensus       309 v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I------~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~  380 (496)
T 3c8v_A          309 AWMGKGSNAQENCYIINSRLERNCVTAHGGKI------INAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIID  380 (496)
T ss_dssp             EEECTTCEECTTCEEEEEEEEESCEECTTCEE------ESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred             eEecCCCEECCCceEeceEeCCCCEECCCcEE------cCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEe
Confidence            99999999999999999999999999999988      45888888888888888877    7777777777777663

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.82  E-value=2e-19  Score=161.44  Aligned_cols=129  Identities=22%  Similarity=0.344  Sum_probs=81.8

Q ss_pred             eCCCCEECCCcEECCCcEECCCCEEcCCcEEe-----ceEEccCCEECCCcEec--------------CeEEcCCCEECC
Q psy9164         223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHSWLE--------------GCIIGWKCVVGQ  283 (380)
Q Consensus       223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~--------------~~~ig~~~~ig~  283 (380)
                      |++++.|++++.|.+++.||++|.|++++.|.     ++.||+++.|++++.|.              ...||+++.|++
T Consensus        40 IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~  119 (305)
T 3t57_A           40 LGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIRE  119 (305)
T ss_dssp             ECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECT
T ss_pred             ECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceEEECCCcccCc
Confidence            33333333344444455566666666666665     58899999999999982              278999999999


Q ss_pred             ceEEeeeeE-------------ecceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-cceeecCcceeecce
Q psy9164         284 WVRMENITV-------------LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLHMLGED  349 (380)
Q Consensus       284 ~~~i~~~~~-------------~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~~~~~~  349 (380)
                      +++|+..+.             ..++.|++++.||+++.+.+++.++.++.||++++|++++.+ +..+||+++++.++.
T Consensus       120 ~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs  199 (305)
T 3t57_A          120 FCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGS  199 (305)
T ss_dssp             TCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred             eEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCC
Confidence            999964322             123444445555555555555566666777778888777644 445677776655444


Q ss_pred             eE
Q psy9164         350 VI  351 (380)
Q Consensus       350 v~  351 (380)
                      ++
T Consensus       200 ~V  201 (305)
T 3t57_A          200 VV  201 (305)
T ss_dssp             EE
T ss_pred             eE
Confidence            44

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=152.36  Aligned_cols=124  Identities=20%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEec-----------------CeE
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLE-----------------GCI  274 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----------------~~~  274 (380)
                      ++.+++.|+|++.|++++.|++++.||++|.|++++.|.    ++.||++|.|++++.|.                 ++.
T Consensus         8 k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~   87 (194)
T 3tv0_A            8 KTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMI   87 (194)
T ss_dssp             ----CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEE
T ss_pred             hcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceE
Confidence            455788888889999999988899999999999999885    57899999999999883                 245


Q ss_pred             EcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         275 IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       275 ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      ||+++.|+.++.+      .++.||++++||.++.|.+++.||++|+||+++.|..+     ..|++++++.|.|+
T Consensus        88 Ig~~~~i~~~~~i------~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~-----~~Ip~~svv~G~pa  152 (194)
T 3tv0_A           88 IGTNNVFEVGCYS------QAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF-----EVIPENTVIYGADC  152 (194)
T ss_dssp             ECSSCEECTTCEE------CCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCC-----EEECTTEEEESTTC
T ss_pred             ECCcceEecceeE------eeeeecccceecceeeECCeEEECCCCEECCCCEECCC-----cEECCCCEEECCCc
Confidence            6666666666665      67778888888887777666666666666666666322     33455555555544

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.81  E-value=4.5e-19  Score=156.22  Aligned_cols=152  Identities=18%  Similarity=0.207  Sum_probs=99.1

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeE---
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITV---  292 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~---  292 (380)
                      +.+++.|+|++.|.+++.|++++.|+++|.|++++.     ||++|.|++++.|. ++.||++|.|++++.|+..+.   
T Consensus         4 ig~~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~-----IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~   78 (265)
T 4e6u_A            4 TSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVT-----IGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLK   78 (265)
T ss_dssp             ----CCBCTTCEECTTCEECTTCEECTTCEECTTEE-----ECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTT
T ss_pred             cCCCCeECCCCEECCCCEECCCCEECCCeEECCCCE-----ECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCcccccc
Confidence            334455555555555555555555555555554443     35555555555554 478888888888888854322   


Q ss_pred             ----ecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEecCceEEec
Q psy9164         293 ----LGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQDELYVNG  360 (380)
Q Consensus       293 ----~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~~~~~i~~  360 (380)
                          ...+.||+++.|++++.+..       .+.||++++|++++.|+.++++.+. .|+.+ +.+.++++||++++||+
T Consensus        79 ~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~-~~i~~~v~Igd~~~Ig~  157 (265)
T 4e6u_A           79 YKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANN-VGVAGHVHIGDHVIVGG  157 (265)
T ss_dssp             CCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTT-CEECTTCEECSSCEECT
T ss_pred             ccCCCCeEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCC-cEECCCcEECCCeEEcC
Confidence                14688888888888888864       3788888888888888776665544 44444 44567889999999999


Q ss_pred             eeeeccccccCCC--CCCCcc
Q psy9164         361 GQVLPHKSIGSSV--PEPQII  379 (380)
Q Consensus       361 ~~v~p~~~v~~~v--p~~~iv  379 (380)
                      +++     |.+++  +++++|
T Consensus       158 ~a~-----V~~~v~Ig~~~~i  173 (265)
T 4e6u_A          158 NSG-----IHQFCKIDSYSMI  173 (265)
T ss_dssp             TCE-----ECTTCEECTTCEE
T ss_pred             CCE-----ECCCcEECCCCEE
Confidence            998     66664  666654

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.81  E-value=7.4e-19  Score=154.68  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             ccCCEECCCcEec-CeEEcCCCEECCceEEeeeeEe--------cceEECccceeCcceEEccc-------eEECCCeEE
Q psy9164         259 LRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITVL--------GECIIGWKCVVGQWVRMENI-------TVLGEDVIV  322 (380)
Q Consensus       259 ~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~~--------~~~~ig~~~~ig~~~~i~~~-------~~ig~~~~i  322 (380)
                      |+++.|++++.|. ++.||++|.|++++.|+..+..        ..+.||+++.|++++.|..+       +.||++++|
T Consensus        38 G~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I  117 (266)
T 3r0s_A           38 GNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFI  117 (266)
T ss_dssp             CTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEE
T ss_pred             CCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccEEECCCcee
Confidence            3344444444443 4677777777777777421110        46777777777777777643       677777777


Q ss_pred             CcceEEcCCeeecce-eecCcceeecceeEecCceEEeceeeeccccccCCC--CCCCcc
Q psy9164         323 QDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSV--PEPQII  379 (380)
Q Consensus       323 g~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~v--p~~~iv  379 (380)
                      ++++.|+.++.+.+. .|+.+ +.+.++++||++++||++++     |.+++  +++++|
T Consensus       118 ~~~~~I~~~~~IG~~~~i~~~-~~i~~~v~Igd~~~Ig~~a~-----V~~~v~Ig~~a~V  171 (266)
T 3r0s_A          118 MAYCHIAHDCLLGNNIILANN-ATLAGHVELGDFTVVGGLTP-----IHQFVKVGEGCMI  171 (266)
T ss_dssp             CTTCEECTTCEECSSCEECTT-CEECTTCEECTTCEECTTCE-----ECTTCEECTTCEE
T ss_pred             CCcceEccccccCCCeEECCC-ceecCCeEECCCcEEccCCE-----ECCCcEECCCCEE
Confidence            777777665555443 34444 34456788888888888887     66665  666554

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.80  E-value=8.5e-19  Score=155.75  Aligned_cols=148  Identities=20%  Similarity=0.292  Sum_probs=98.9

Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeE-------
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITV-------  292 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~-------  292 (380)
                      +.|+|++.|++++.|++++.|+++|.|++++.     ||++|.|++++.|. ++.||++|.|++++.|+....       
T Consensus        23 ~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~-----IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~   97 (283)
T 4eqy_A           23 SRIHPTAIIEPGAQLHETVEVGPYAIVGSNVT-----IGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDE   97 (283)
T ss_dssp             CCBCTTCEECTTCEECTTCEECTTCEECTTEE-----ECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCC
T ss_pred             cccCCCCEECCCCEECCCCEECCCCEECCCCE-----ECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCC
Confidence            34455555554444444444444444444433     35555555555554 578888888888888854221       


Q ss_pred             ecceEECccceeCcceEEccc-------eEECCCeEECcceEEcCCeeecce-eecCcceeecceeEecCceEEeceeee
Q psy9164         293 LGECIIGWKCVVGQWVRMENI-------TVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQDELYVNGGQVL  364 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~~-------~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~~~~~i~~~~v~  364 (380)
                      ...+.||+++.|++++.|..+       +.||++++|++++.|+.++++.+. .|+.+ +.+.++++||++++||++++ 
T Consensus        98 ~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~-~~i~~~v~Igd~~~Ig~~a~-  175 (283)
T 4eqy_A           98 PTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSN-AQMAGHVEIGDWAIVGGMSG-  175 (283)
T ss_dssp             CCEEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTT-CEECTTCEECTTCEECTTCE-
T ss_pred             CceEEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCC-ceEcCCcEECCCeEEecCCE-
Confidence            136888999999999988753       788888888888888776665554 44444 44567799999999999999 


Q ss_pred             ccccccCCC--CCCCcc
Q psy9164         365 PHKSIGSSV--PEPQII  379 (380)
Q Consensus       365 p~~~v~~~v--p~~~iv  379 (380)
                          |.+++  +++++|
T Consensus       176 ----V~~~v~Ig~~~vv  188 (283)
T 4eqy_A          176 ----VHQYVRIGAHSML  188 (283)
T ss_dssp             ----ECTTCEECTTCEE
T ss_pred             ----EcCCeEECCCcEE
Confidence                66665  666654

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.80  E-value=1e-18  Score=153.78  Aligned_cols=143  Identities=22%  Similarity=0.285  Sum_probs=98.2

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeE---
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITV---  292 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~---  292 (380)
                      |++++.|+|++.|++++.|++++.|+++|.|++     ++.||++|.|++++.|. ++.||++|.|++++.|....+   
T Consensus         2 I~~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~-----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~   76 (262)
T 2qia_A            2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGP-----HVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLK   76 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECT-----TEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTT
T ss_pred             cCCCCeECCCCEECCCCEECCCCEECCCCEECC-----CCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCcccc
Confidence            344555555555555555555555555555544     44556777777777765 588999999999999854211   


Q ss_pred             ----ecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEece
Q psy9164         293 ----LGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGG  361 (380)
Q Consensus       293 ----~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~  361 (380)
                          ...+.||+++.|++++.|..       .++||++++|++++.|..++.+.+..+-.+.+.+.++++|++++.||++
T Consensus        77 ~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~  156 (262)
T 2qia_A           77 YAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGM  156 (262)
T ss_dssp             CCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred             ccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccC
Confidence                13688899999999988875       3788888888888888766655554333334556778899999999999


Q ss_pred             eee
Q psy9164         362 QVL  364 (380)
Q Consensus       362 ~v~  364 (380)
                      +++
T Consensus       157 ~~I  159 (262)
T 2qia_A          157 TAV  159 (262)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            983

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.80  E-value=2.9e-19  Score=161.01  Aligned_cols=190  Identities=19%  Similarity=0.277  Sum_probs=139.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHccccccCCc-EEEEeecCCCCCCchHHHHhHHhhCCCCCc-EEEEeC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRA-EQMEDELTVETKKLGI-SLVFSHENEPLGTAGPLALAKDILNKSQEP-FFVLNS   77 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~-~i~~~~~~~~~gt~~al~~a~~~i~~~~~~-~lv~~g   77 (380)
                      ||+|++++|.++ +++|+|++++.. +.+++++.+.   +++ ++.+..++...||+++++.+.+++.  .++ |++++|
T Consensus        39 li~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~---~~~~~~~~i~~~~~~gt~~al~~a~~~l~--~~~~~lv~~~  112 (308)
T 2qh5_A           39 LFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE---IKNKSVGFLLESLSKNTANAIALSALMSD--KEDLLIVTPS  112 (308)
T ss_dssp             HHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT---CSSCEEEEEEESSCCCHHHHHHHHHHTSC--TTSEEEEEES
T ss_pred             HHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh---hCCCccEEEeCCCCCChHHHHHHHHHHhC--CCCeEEEEcC
Confidence            689999999999 999999999864 6888888652   455 6667777888999999999999883  354 999999


Q ss_pred             Cccc-CCC-hHHHHHH---HHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC--------CCCeEEEEEEE
Q psy9164          78 DIIC-DFP-FKDLVSF---HKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF--------VSNKINAGMYI  144 (380)
Q Consensus        78 D~i~-~~~-l~~~l~~---h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~--------~~~~~~~giyi  144 (380)
                      |.++ +.+ ++++++.   |.+.++.+|+.+.+.+++..||++..+++++|..|.|||...        ...+.++|+|+
T Consensus       113 D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~  192 (308)
T 2qh5_A          113 DHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFV  192 (308)
T ss_dssp             SCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECSSSSBCSEEEESCCHHHHHHHHHHCCEEEEEEEEE
T ss_pred             CccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEECCCCEEEEEEECCChHHHHHHhhcCCeEEEeEEEE
Confidence            9987 666 8999987   777777888888888778889999887788999999998632        14689999999


Q ss_pred             eCHhHH-hhccC---------------CC------CCc---ccchhhh---------hhcC-CcEEEEEeccEEEecCCh
Q psy9164         145 FNPSVL-DRIEI---------------KP------TSI---EKEIFPL---------MSKE-KQLYAMELKGFWMDVGQP  189 (380)
Q Consensus       145 ~~~~~l-~~l~~---------------~~------~~~---~~~il~~---------l~~~-~~i~~~~~~~~~~~i~~~  189 (380)
                      |+++.| +.+..               ..      ..+   ..++++.         ++++ .+++++..+++|.+++++
T Consensus       193 ~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~  272 (308)
T 2qh5_A          193 FQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNF  272 (308)
T ss_dssp             EEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC----
T ss_pred             EEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCH
Confidence            999875 33311               00      111   1244442         4555 589999999999999999


Q ss_pred             hhHHHHH
Q psy9164         190 RDFLKGM  196 (380)
Q Consensus       190 ~~~~~a~  196 (380)
                      ++|.+++
T Consensus       273 ~~l~~~~  279 (308)
T 2qh5_A          273 NALFEEA  279 (308)
T ss_dssp             -------
T ss_pred             HHHHHHh
Confidence            9987664

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.80  E-value=1.4e-18  Score=154.02  Aligned_cols=14  Identities=14%  Similarity=0.081  Sum_probs=6.8

Q ss_pred             eEecCceEEeceee
Q psy9164         350 VIVQDELYVNGGQV  363 (380)
Q Consensus       350 v~i~~~~~i~~~~v  363 (380)
                      ++||+++.||++++
T Consensus       171 v~Ig~~~~IG~~~~  184 (273)
T 3fs8_A          171 VTIELFAVIAARSV  184 (273)
T ss_dssp             CEECTTCEECTTCE
T ss_pred             cEECCCeEEcCCCE
Confidence            44444444444444

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.80  E-value=4.6e-19  Score=145.88  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=101.2

Q ss_pred             ccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEec----eEEccCCEECCCcEec-----CeEEcCCCEECCceEEe
Q psy9164         218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR----STILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRME  288 (380)
Q Consensus       218 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~  288 (380)
                      .....+++++.|++++.|.+++.||++|.|++++.|..    ++||++|.|++++.|.     +++||+++.|++++.+ 
T Consensus        10 ~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i-   88 (173)
T 1xhd_A           10 EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL-   88 (173)
T ss_dssp             TBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE-
T ss_pred             CCCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEE-
Confidence            34556777777777777777888888888888888863    7999999999999997     7999999999999998 


Q ss_pred             eeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEE-eceeeeccc
Q psy9164         289 NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYV-NGGQVLPHK  367 (380)
Q Consensus       289 ~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i-~~~~v~p~~  367 (380)
                           .++.||++++||.++.+.+++.||++++||+++.+.                  ++..|++++++ |..+.    
T Consensus        89 -----~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~------------------~~~~i~~~~vv~G~pa~----  141 (173)
T 1xhd_A           89 -----HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVS------------------QGKKIPPNTLAFGRPAK----  141 (173)
T ss_dssp             -----ESCEECTTCEECTTCEECTTCEECTTCEECTTCEEC------------------TTCEECTTEEEEETTEE----
T ss_pred             -----eCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEEC------------------CCcEeCCCCEEECCCCE----
Confidence                 568889999999888887777777777777777663                  22336677776 44455    


Q ss_pred             cccCCCCCCC
Q psy9164         368 SIGSSVPEPQ  377 (380)
Q Consensus       368 ~v~~~vp~~~  377 (380)
                       +.|++|+++
T Consensus       142 -~~~~~~~~~  150 (173)
T 1xhd_A          142 -VIRELTAED  150 (173)
T ss_dssp             -EEEECCHHH
T ss_pred             -ECCCCCHHH
Confidence             556666543

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.80  E-value=2e-18  Score=159.42  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=84.3

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCc------EECCCCEEcCCcEEe-ceEEccCCEECCCcEec------------
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNV------TIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE------------  271 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~------------  271 (380)
                      +.+++.|.++++|++++.||++|.|++++      .||++|.|++++.|. ++.||++|.|++++.|.            
T Consensus       139 Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~  218 (374)
T 2iu8_A          139 IEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFG  218 (374)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETTT
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccCC
Confidence            34444444555555555555555554444      444444555555553 56677777777777762            


Q ss_pred             ---------CeEEcCCCEECCceEEeeeeE-----------ecceEECccceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164         272 ---------GCIIGWKCVVGQWVRMENITV-----------LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       272 ---------~~~ig~~~~ig~~~~i~~~~~-----------~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~  331 (380)
                               .++||++|.||++++|.....           ...+.|++++.||+++.+.+++.+..++.||++++|+++
T Consensus       219 ~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~  298 (374)
T 2iu8_A          219 QHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQ  298 (374)
T ss_dssp             EEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTT
T ss_pred             ceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEccCcccCCCcEECCCeEEecC
Confidence                     388999999999999864321           123445556666666666666666666777777777776


Q ss_pred             e-eecceeecCcceeeccee
Q psy9164         332 Q-VLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       332 ~-v~~~~~i~~~~~~~~~~v  350 (380)
                      + +.++.+||+++++.++.+
T Consensus       299 ~~i~~~v~Ig~~~~I~a~s~  318 (374)
T 2iu8_A          299 AGITGHICIADHVIMMAQTG  318 (374)
T ss_dssp             CEECSSCEECTTEEECTTCE
T ss_pred             cEECCCcccCCCcEEccCce
Confidence            6 445566776655544433

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.80  E-value=6.5e-19  Score=144.90  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEec----eEEccCCEECCCcEec-----CeEEcCCCEECCceEEeeee
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR----STILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRMENIT  291 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~~~~  291 (380)
                      ..+++++.|++++.+.+++.||++|.|++++.|..    +.||++|.|++++.|.     ++.||+++.|++++.|    
T Consensus        11 ~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i----   86 (173)
T 1v3w_A           11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMV----   86 (173)
T ss_dssp             CEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEE----
T ss_pred             CEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEE----
Confidence            34566666666666666777777777777777763    8999999999999996     5899999999999998    


Q ss_pred             EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEE-eceeeecccccc
Q psy9164         292 VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYV-NGGQVLPHKSIG  370 (380)
Q Consensus       292 ~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i-~~~~v~p~~~v~  370 (380)
                        .++.||++++||.++.+.+++.||++++||+++.|.                  ++..|++++++ |+.+.     +.
T Consensus        87 --~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~------------------~~~~i~~~~~v~G~pa~-----~~  141 (173)
T 1v3w_A           87 --HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVP------------------PNKEIPDYSLVLGVPGK-----VV  141 (173)
T ss_dssp             --ESCEECSSEEECTTCEECTTCEECSSEEECTTCEEC------------------TTCEECTTEEEEETTEE-----EE
T ss_pred             --CCCEECCCCEECCCCEEeCCCEECCCCEECCCCEEC------------------CCcEeCCCcEEECcCCE-----Ee
Confidence              568889999999998888888888888877777773                  23447777777 55555     66


Q ss_pred             CCCCCCC
Q psy9164         371 SSVPEPQ  377 (380)
Q Consensus       371 ~~vp~~~  377 (380)
                      +++|+++
T Consensus       142 ~~~~~~~  148 (173)
T 1v3w_A          142 RQLTEEE  148 (173)
T ss_dssp             EECCHHH
T ss_pred             ccCCHHH
Confidence            6776643

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.78  E-value=2.8e-19  Score=155.18  Aligned_cols=152  Identities=20%  Similarity=0.241  Sum_probs=88.0

Q ss_pred             CCcEEEEEeccE----EEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCE
Q psy9164         171 EKQLYAMELKGF----WMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVV  246 (380)
Q Consensus       171 ~~~i~~~~~~~~----~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~  246 (380)
                      ..+++.+...++    |.++++   +++++..++..+......+....   ......++++.|++++.|++++.||++|.
T Consensus        38 ~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~  111 (240)
T 3r8y_A           38 TVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAI---PMLDLKGIKARIEPGAIIRDHVEIGDNAV  111 (240)
T ss_dssp             TSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCS---CBCCCTTCSSEECTTCEEBSSCEECTTCE
T ss_pred             cceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhcc---chhhccCCCCEECCCCEECCCcEECCCCE
Confidence            345666655555    777665   66676666654443322222111   11223345566666666666667777777


Q ss_pred             EcCCcEEe-ceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeE---ecceEECccceeCcceEEccceEECCCeE
Q psy9164         247 IEGGVCIK-RSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITV---LGECIIGWKCVVGQWVRMENITVLGEDVI  321 (380)
Q Consensus       247 i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~---~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  321 (380)
                      |++++.|. ++.||++|.|+.++.|. +++||++|.|++++.+.+...   ...++||++++||.++.|..++.||+++.
T Consensus       112 I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~  191 (240)
T 3r8y_A          112 IMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAV  191 (240)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCE
Confidence            77777773 67777888887777764 577777777777777743110   11266666666666655555455555544


Q ss_pred             ECcceEE
Q psy9164         322 VQDELYV  328 (380)
Q Consensus       322 ig~~~~i  328 (380)
                      |++++.+
T Consensus       192 I~~gsvV  198 (240)
T 3r8y_A          192 VAAGAVV  198 (240)
T ss_dssp             ECTTCEE
T ss_pred             ECCCCEE
Confidence            4444444

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.78  E-value=8.2e-19  Score=148.59  Aligned_cols=137  Identities=15%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             ceeeCCCCEECCCcEECC--CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe----cCeEEcCCCEECCceEEeeeeE
Q psy9164         220 NVLVDPTATIGPGCRIGP--NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL----EGCIIGWKCVVGQWVRMENITV  292 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i----~~~~ig~~~~ig~~~~i~~~~~  292 (380)
                      ...+++++.|++++.|.+  ++.||++|.|+++|.|. ++.||++|.|++++.|    ++++||++|.|+++|.|.....
T Consensus        32 ~~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~  111 (205)
T 3vbi_A           32 FLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAID  111 (205)
T ss_dssp             CSEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEEC
T ss_pred             CeEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCC
Confidence            345566666666666665  67788888888888876 7889999999999988    3489999999999999954322


Q ss_pred             e--cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeecccccc
Q psy9164         293 L--GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIG  370 (380)
Q Consensus       293 ~--~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~  370 (380)
                      .  +....+.............+++||++|+||+++.|                  .++++||++++||++++     |+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I------------------~~gv~Ig~~~~Ig~gsv-----V~  168 (205)
T 3vbi_A          112 DFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSII------------------FPNVVIGEGVAVGAMSM-----VK  168 (205)
T ss_dssp             CCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEE------------------CSSCEECTTCEECTTCE-----EC
T ss_pred             CcccccccCcccccccceeccCCEEECCCCEECCCCEE------------------cCCCEECCCCEEcCCCE-----EC
Confidence            1  11111111111111222344666666666666666                  44556777777777777     66


Q ss_pred             CCCCCCCcc
Q psy9164         371 SSVPEPQII  379 (380)
Q Consensus       371 ~~vp~~~iv  379 (380)
                      +|+|+++++
T Consensus       169 ~~v~~~~v~  177 (205)
T 3vbi_A          169 ESLDDWYIY  177 (205)
T ss_dssp             SCBCTTEEE
T ss_pred             CccCCCeEE
Confidence            777776654

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.78  E-value=4.5e-18  Score=148.65  Aligned_cols=194  Identities=15%  Similarity=0.165  Sum_probs=149.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC-CCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN-KSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~-~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.++|+++|+|+++  .+++++++.+    +++++.+..++...||++ +..+...+. ...+.|++++||.
T Consensus        29 li~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~----~g~~v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~  101 (252)
T 3oam_A           29 MIQWVYEQAMQAGADRVIIATD--DERVEQAVQA----FGGVVCMTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDE  101 (252)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTC
T ss_pred             HHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH----cCCEEEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCe
Confidence            6899999999999999999885  5888888864    477888777788899988 555555552 1256799999997


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCce-----eEEEECCCCceeEEEeCCCC-------------CCCCeEE
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKY-----GVVLYNEHGCIESFIEKPQE-------------FVSNKIN  139 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~-----g~v~~d~~~~v~~~~ek~~~-------------~~~~~~~  139 (380)
                        +...++.++++.|++.++++++++.+.+++..|     +.+..|++|+++.|.++|-.             ....+.+
T Consensus       102 Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n  181 (252)
T 3oam_A          102 PLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQPLLRH  181 (252)
T ss_dssp             TTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSSCCCCSCEEEE
T ss_pred             eecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccccccccccccceEE
Confidence              556779999999998888899999999988888     99999999999999988632             2357899


Q ss_pred             EEEEEeCHhHHhhccCCC-CCccc-chhhhh--hcC-CcEEEEEe-ccEEEecCChhhHHHHHHHHHh
Q psy9164         140 AGMYIFNPSVLDRIEIKP-TSIEK-EIFPLM--SKE-KQLYAMEL-KGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       140 ~giyi~~~~~l~~l~~~~-~~~~~-~il~~l--~~~-~~i~~~~~-~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                      +|+|+|++++|+.+.... ..++. +.+..+  ++. .++.++.. ..+|.++++|+++.+++..+..
T Consensus       182 ~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~  249 (252)
T 3oam_A          182 IGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAE  249 (252)
T ss_dssp             EEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred             EEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHh
Confidence            999999999998875432 23322 223222  333 47888766 4468999999999988765543

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.78  E-value=4.4e-18  Score=149.82  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=12.4

Q ss_pred             CccceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164         299 GWKCVVGQWVRMENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       299 g~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~  331 (380)
                      ++++.||+++.+.+++.+..++.||++++|+++
T Consensus       120 ~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~  152 (270)
T 1j2z_A          120 AHDCVIGSHCILANGVTLAGHIEIGDYVNIGGL  152 (270)
T ss_dssp             CTTCEECSSCEECTTCEECTTCEECSSCEECTT
T ss_pred             CCCcEECCCcEEcCCccccCccEECCCeEEecC
Confidence            333333333333333333333333333333333

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.78  E-value=4.3e-18  Score=149.38  Aligned_cols=72  Identities=17%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             eEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164         256 STILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       256 ~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~  332 (380)
                      +.||+++.|++++.|.. +..+..+.||+++.|.+     ++.|++++.||+++.+.+++.+..++.||++++|++++
T Consensus        80 v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~-----~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a  152 (259)
T 3hsq_A           80 TVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMG-----NSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLV  152 (259)
T ss_dssp             EEECSSCEECTTCEEECCSBTTBCEEECSSCEECT-----TCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSE
T ss_pred             EEECCCcEECCCCEECCCccCCCcEEECCCcEEcC-----CcEECCCcEECCccEEcCCceECCccEECCCcEEeCCC
Confidence            34444444444444432 11122444455555532     33334444444444444444444444444444444443

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.77  E-value=3.6e-18  Score=142.73  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=87.4

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEec------CeEEcCCCEECCce
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLE------GCIIGWKCVVGQWV  285 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~------~~~ig~~~~ig~~~  285 (380)
                      .+.+.+.|++++.|++++.|.+++.||++|.|++++.|.    +++||++|.|++++.|.      +++||++|.|++++
T Consensus        29 ~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~  108 (191)
T 3ixc_A           29 YAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSC  108 (191)
T ss_dssp             BTTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTC
T ss_pred             ccCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCC
Confidence            344566777778888888887788888888888888886    45899999999999997      78899999999988


Q ss_pred             EEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         286 RMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       286 ~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      .+      .++.||++++||.++.+.+++.||++++||+++.|.
T Consensus       109 ~i------~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~  146 (191)
T 3ixc_A          109 IL------HACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLT  146 (191)
T ss_dssp             EE------CSCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EE------ECCEECCCCEECCCCEEeCCeEECCCCEECCCCEEC
Confidence            88      568888888888888877777777777777776663

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.77  E-value=3.2e-18  Score=145.79  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=82.1

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-----ceEEccCCEECCCcEecC---------------eEEcCCC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHSWLEG---------------CIIGWKC  279 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------------~~ig~~~  279 (380)
                      ...+++++.|++++.|++++.||++|.|++++.|.     +++||++|.|++++.|..               +.||+++
T Consensus        39 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v  118 (213)
T 3kwd_A           39 EPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNV  118 (213)
T ss_dssp             CCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTC
T ss_pred             CCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCc
Confidence            34566666666666666777777777777777774     468888888888888853               6677777


Q ss_pred             EECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEe
Q psy9164         280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVN  359 (380)
Q Consensus       280 ~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~  359 (380)
                      .|++++.|.     +++.||++++||.++.+.+ ++||++++||+++.|                   .+++|++++.|+
T Consensus       119 ~Ig~~~~I~-----~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-------------------~~~~i~~~~~v~  173 (213)
T 3kwd_A          119 SITHMALIH-----GPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-------------------QDVEIPPGKYVP  173 (213)
T ss_dssp             EECTTCEEE-----EEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-------------------ESCEECTTBEEC
T ss_pred             EECCCcEEc-----CCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-------------------CCcEeCCCCEEC
Confidence            777777662     3477777777777777764 666666666665555                   134466777777


Q ss_pred             ceee
Q psy9164         360 GGQV  363 (380)
Q Consensus       360 ~~~v  363 (380)
                      ++++
T Consensus       174 ~~~v  177 (213)
T 3kwd_A          174 SGMV  177 (213)
T ss_dssp             TTCE
T ss_pred             CCcE
Confidence            7776

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.76  E-value=1.2e-17  Score=139.88  Aligned_cols=134  Identities=13%  Similarity=0.121  Sum_probs=82.6

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-cCeEEcCCCEECCceEEe
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRME  288 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~i~  288 (380)
                      +++.+.|.+++.|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.| .++.|++++.|++++.+.
T Consensus         6 I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~   85 (192)
T 3mqg_A            6 IHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFT   85 (192)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCC
T ss_pred             ECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEe
Confidence            44455555555666666666666666666666666666666665 4677777777776666 446677777777666664


Q ss_pred             eee----------EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         289 NIT----------VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       289 ~~~----------~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +..          ....++||++++||.++.|.+++.||++++||+++.+      . +.++++.++.|.|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV------~-~~vp~~~v~~G~PAk  151 (192)
T 3mqg_A           86 NVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV------N-KDVPDFALVVGVPAR  151 (192)
T ss_dssp             SCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEE------C-SCBCTTEEEETTTTE
T ss_pred             cccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEE------C-cccCCCCEEEccCCE
Confidence            311          1145777777777777766666666666665555555      3 235556666665554

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.74  E-value=2.2e-17  Score=146.73  Aligned_cols=136  Identities=13%  Similarity=0.171  Sum_probs=77.0

Q ss_pred             CCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeee---eEecceEECc
Q psy9164         226 TATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENI---TVLGECIIGW  300 (380)
Q Consensus       226 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~---~~~~~~~ig~  300 (380)
                      ++.|++++.|++++.||++|.|+++ .|. ++.||++|.|+.++.|.+ +.||++|.|++++.+.+.   .....++||+
T Consensus       129 g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd  207 (304)
T 3eg4_A          129 GFRAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIED  207 (304)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECT
T ss_pred             CcEEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcC
Confidence            3333333344344444444444433 221 233344444443333321 344444444444444210   0011488899


Q ss_pred             cceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCC
Q psy9164         301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSS  372 (380)
Q Consensus       301 ~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~  372 (380)
                      +|+||.++.|.+++.||++++||++++|..++.+.     ++++.......|+++++|++|++     +++|
T Consensus       208 ~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Ig-----d~~~g~~~~~~Ip~~svV~~Gs~-----v~kd  269 (304)
T 3eg4_A          208 NCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIV-----DRATGEVFYGEVPPYSVVVAGTM-----PGKN  269 (304)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCCEE-----ETTTCCEECSEECTTEEEEEEEE-----ECCC
T ss_pred             CCEECCCCEEcCCcEECCCcEECCCCEEcCCeEEC-----ccceeeeccCEeCCCCEEecCcE-----ecCC
Confidence            99999888888888888888888888887665444     43332333456999999999999     7777

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.74  E-value=1.2e-17  Score=139.57  Aligned_cols=77  Identities=16%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             ceEEccCCEECCCcEec----CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcC
Q psy9164         255 RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNG  330 (380)
Q Consensus       255 ~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~  330 (380)
                      ++.||++|.|++++.|.    ++.||++|.|+++|.|....+.+++.||+++.||.++.+.. ++||++++||+++.|..
T Consensus        51 ~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~  129 (191)
T 3ixc_A           51 DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMD  129 (191)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECS-CEECTTCEECTTCEECT
T ss_pred             CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEEC-CEECCCCEECCCCEEeC
Confidence            45566777777777774    35999999999999997655445899999999999998876 88899999888888854


Q ss_pred             Ce
Q psy9164         331 GQ  332 (380)
Q Consensus       331 ~~  332 (380)
                      ++
T Consensus       130 ~~  131 (191)
T 3ixc_A          130 RA  131 (191)
T ss_dssp             TC
T ss_pred             Ce
Confidence            43

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.73  E-value=4.3e-17  Score=136.60  Aligned_cols=100  Identities=17%  Similarity=0.246  Sum_probs=63.9

Q ss_pred             eEEccCCEECCCcEe----cCeEEcCCCEECCceEEeeee-----------EecceEECccceeCcceEEccceEECCCe
Q psy9164         256 STILRDAIVKSHSWL----EGCIIGWKCVVGQWVRMENIT-----------VLGECIIGWKCVVGQWVRMENITVLGEDV  320 (380)
Q Consensus       256 ~~i~~~~~i~~~~~i----~~~~ig~~~~ig~~~~i~~~~-----------~~~~~~ig~~~~ig~~~~i~~~~~ig~~~  320 (380)
                      +.||++|.|++++.|    .++.||++|.|++++.|.+..           ....+.||++++|+.++.+.. +.||+++
T Consensus        31 V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~  109 (194)
T 3tv0_A           31 VTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQA-MKMGDNN  109 (194)
T ss_dssp             EEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECC-SEECSSC
T ss_pred             CEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEee-eeecccc
Confidence            344555555555555    246889999999998886421           234577788888887777754 6677888


Q ss_pred             EECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCC--CCCCCcc
Q psy9164         321 IVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSS--VPEPQII  379 (380)
Q Consensus       321 ~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~--vp~~~iv  379 (380)
                      +||+++.|+                  .+++||++++||++++     |++|  +|++++|
T Consensus       110 ~Ig~~~~I~------------------~gv~IG~~~~Igagsv-----V~~~~~Ip~~svv  147 (194)
T 3tv0_A          110 VIESKAYVG------------------RNVILTSGCIIGACCN-----LNTFEVIPENTVI  147 (194)
T ss_dssp             EECTTCEEC------------------TTEEECSSCEECTTCE-----ECCCEEECTTEEE
T ss_pred             eecceeeEC------------------CeEEECCCCEECCCCE-----ECCCcEECCCCEE
Confidence            877777774                  4445555555555555     5555  5555544

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.73  E-value=4.9e-17  Score=154.93  Aligned_cols=119  Identities=29%  Similarity=0.414  Sum_probs=87.3

Q ss_pred             CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeee-
Q psy9164         213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENI-  290 (380)
Q Consensus       213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~-  290 (380)
                      +.+.|.+++.|++++.|++++.|. ++.||++|.|++++.|.++.||+++.|++++.|. ++.||+++.||+++.|.+. 
T Consensus       276 ~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~  354 (456)
T 2v0h_A          276 VNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKST  354 (456)
T ss_dssp             SSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCE
T ss_pred             CCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccE
Confidence            333444444555555555555554 5567899999999999999999999999999996 6999999998888877532 


Q ss_pred             ----------eEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCe
Q psy9164         291 ----------TVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       291 ----------~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~  332 (380)
                                .+.+.+.||++++||+++.+..       +++||++|+||+++.|.+++
T Consensus       355 i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v  413 (456)
T 2v0h_A          355 VGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPV  413 (456)
T ss_dssp             ECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESE
T ss_pred             ECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCc
Confidence                      2234568888888888888765       67777777777777775544

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.73  E-value=6e-17  Score=154.41  Aligned_cols=121  Identities=23%  Similarity=0.349  Sum_probs=90.6

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEee
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMEN  289 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~  289 (380)
                      +.+++.|.+++.|++++.|++++.|. ++.||++|.|++++.|.++.||++|.|++++.|. ++.||+++.||+++.+.+
T Consensus       277 i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~  355 (459)
T 4fce_A          277 IDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKK  355 (459)
T ss_dssp             ECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEE
T ss_pred             ECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEee
Confidence            44455555666666677777777775 5888899999999999999999999999999996 799999999998887754


Q ss_pred             ee-----------EecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCe
Q psy9164         290 IT-----------VLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       290 ~~-----------~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~  332 (380)
                      ..           +.+++.||++++||+++.+.+       +++||++||||.++.|..|+
T Consensus       356 ~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv  416 (459)
T 4fce_A          356 ARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPV  416 (459)
T ss_dssp             EEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSE
T ss_pred             eEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCc
Confidence            33           334557777777777777754       56777777777777665444

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.73  E-value=2e-17  Score=143.87  Aligned_cols=120  Identities=21%  Similarity=0.314  Sum_probs=80.2

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEec-----eEEccCCEECCCcEec-----------------------
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR-----STILRDAIVKSHSWLE-----------------------  271 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~-----------------------  271 (380)
                      ...|++++.|++++.|.+++.||++|.|+++|.|..     ++||++|.|++++.|.                       
T Consensus        59 ~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~  138 (247)
T 1qre_A           59 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE  138 (247)
T ss_dssp             CCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEE
T ss_pred             CcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCcc
Confidence            445666666666666666777777777777777752     3778888888877774                       


Q ss_pred             -CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         272 -GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       272 -~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                       +++||+++.|+++|.|.     ++++||++++||.++.+.. +.||++++||+++.|                   .++
T Consensus       139 ~~v~IG~~v~Ig~~~~I~-----~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV-------------------~~~  193 (247)
T 1qre_A          139 YAVYIGNNVSLAHQSQVH-----GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-------------------IGV  193 (247)
T ss_dssp             ESEEECTTCEECTTCEEE-----EEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-------------------ESC
T ss_pred             CceEECCCCEECCCCEEc-----CCcEECCCCEECCCCEEec-eEECCCCEECCCCEE-------------------CCe
Confidence             36777777777777772     2367777777777777665 666666665555554                   234


Q ss_pred             EecCceEEeceeee
Q psy9164         351 IVQDELYVNGGQVL  364 (380)
Q Consensus       351 ~i~~~~~i~~~~v~  364 (380)
                      +|+++++|++++++
T Consensus       194 ~I~~~~~v~~g~vv  207 (247)
T 1qre_A          194 TIPDGRYIPAGMVV  207 (247)
T ss_dssp             EECTTBEECTTCEE
T ss_pred             EeCCCCEECCCCEE
Confidence            46777777777764

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.73  E-value=8.1e-17  Score=144.54  Aligned_cols=117  Identities=17%  Similarity=0.131  Sum_probs=82.4

Q ss_pred             Ccccc-ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeE-
Q psy9164         215 DGIVG-NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITV-  292 (380)
Q Consensus       215 ~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~-  292 (380)
                      .-|.+ ++.+++++.|++++.|++++.||++|+|+++|+|.+++|++++.|+++++|.++.|+++|.|+.++.+.+... 
T Consensus        59 ~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I  138 (334)
T 2pig_A           59 CWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEI  138 (334)
T ss_dssp             CEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEE
T ss_pred             eEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEE
Confidence            34555 6777778888888888888888888999999999999999999999999888877777777666665443221 


Q ss_pred             ---------------------ecceEECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164         293 ---------------------LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       293 ---------------------~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~  332 (380)
                                           ..++.|+++|.|+.++.|. +++|++++.|++++.+.++.
T Consensus       139 ~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~~  198 (334)
T 2pig_A          139 LAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGDK  198 (334)
T ss_dssp             EC--------CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECCS
T ss_pred             eecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCce
Confidence                                 2245555556666666665 46666666666666665543

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.73  E-value=6.9e-17  Score=134.69  Aligned_cols=104  Identities=22%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEe------------cCeEEcCCCEECC
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWL------------EGCIIGWKCVVGQ  283 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i------------~~~~ig~~~~ig~  283 (380)
                      ...+++++.|++++.|++++.||++|.|++++.|.    ++.||++|.|++++.|            .+++||+++.|++
T Consensus        15 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~   94 (187)
T 3r3r_A           15 FPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGH   94 (187)
T ss_dssp             CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECT
T ss_pred             CcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECC
Confidence            34556666666666666677777777777777775    3589999999999999            6799999999999


Q ss_pred             ceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         284 WVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       284 ~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      ++.|      .++.||++++||.++.+..++.||++++||+++.|.
T Consensus        95 ~~~i------~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~  134 (187)
T 3r3r_A           95 KVML------HGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVP  134 (187)
T ss_dssp             TCEE------ESCEECSSEEECTTCEECTTCEECSSEEECTTCEEC
T ss_pred             CCEE------eCcEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence            9988      568888888888888887777777777777776663

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.72  E-value=1.4e-17  Score=145.41  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=41.5

Q ss_pred             cceeeCCCCEECCCcEE----CCCcEECCCCEEcCCcEEe---ceEEccCCEECCCcEec----CeEEcCCCEECCceEE
Q psy9164         219 GNVLVDPTATIGPGCRI----GPNVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRM  287 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i  287 (380)
                      .++.|++++.+...+.+    ...+.||++|.|++++.|.   ++.||++|.|++++.|.    ++.||++|.||++|.|
T Consensus        62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I  141 (252)
T 3jqy_B           62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVIL  141 (252)
T ss_dssp             CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEE
T ss_pred             CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEE
Confidence            34455555554444444    3345566666666666663   56666666666666665    5666666666666666


Q ss_pred             ee
Q psy9164         288 EN  289 (380)
Q Consensus       288 ~~  289 (380)
                      .+
T Consensus       142 ~~  143 (252)
T 3jqy_B          142 RA  143 (252)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.71  E-value=7.8e-17  Score=134.64  Aligned_cols=102  Identities=20%  Similarity=0.218  Sum_probs=76.7

Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecCe------------EEcCCCEECCc
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEGC------------IIGWKCVVGQW  284 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~------------~ig~~~~ig~~  284 (380)
                      ..+++++.|++++.|++++.||++|.|++++.|.    ++.||++|.|++++.|..+            .||++|.|+++
T Consensus        20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~   99 (189)
T 3r1w_A           20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQ   99 (189)
T ss_dssp             CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTT
T ss_pred             CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCC
Confidence            3456666666666666677777777777777774    4589999999999988653            88888888888


Q ss_pred             eEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         285 VRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       285 ~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      +.|      .++.||++++||.++.+.+++.||++++||+++.|
T Consensus       100 ~~i------~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V  137 (189)
T 3r1w_A          100 AML------HGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATV  137 (189)
T ss_dssp             CEE------ESCEECSSEEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             CEE------eCcEECCCcEECCCCEEcCCCEECCCCEEccCCEE
Confidence            888      45788888888888777777777777776666666

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.71  E-value=7.3e-17  Score=132.66  Aligned_cols=115  Identities=14%  Similarity=0.218  Sum_probs=85.2

Q ss_pred             EECCCCEEcCCcEEe-ceEEccCCEECCCcEecC----eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccce
Q psy9164         240 TIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG----CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENIT  314 (380)
Q Consensus       240 ~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~----~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~  314 (380)
                      .|++++.|++++.+. ++.||++|.|++++.|..    +.||+++.|+++|.|.... ..++.||+++.|+.++.+.. +
T Consensus        14 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~-~~~~~Ig~~~~Ig~~~~i~~-~   91 (173)
T 1xhd_A           14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSP-QYPLILEDDVTVGHQVILHS-C   91 (173)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCT-TCCEEECTTCEECTTCEEES-C
T ss_pred             EECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCC-CCCeEECCCCEECCCCEEeC-C
Confidence            334444444444442 566778888888887754    7999999999999995311 13688899999998888865 7


Q ss_pred             EECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeecccccc--CCCCCCCcc
Q psy9164         315 VLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIG--SSVPEPQII  379 (380)
Q Consensus       315 ~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~--~~vp~~~iv  379 (380)
                      +||++++||+++.|                  .++++||++++|+++++     |+  +++|+++++
T Consensus        92 ~Ig~~~~Ig~~~~i------------------~~~~~Ig~~~~Ig~~s~-----V~~~~~i~~~~vv  135 (173)
T 1xhd_A           92 HIKKDALIGMGSII------------------LDGAEIGEGAFIGAGSL-----VSQGKKIPPNTLA  135 (173)
T ss_dssp             EECTTCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECTTCEECTTEEE
T ss_pred             EECCCCEEcCCCEE------------------cCCCEECCCCEECCCCE-----ECCCcEeCCCCEE
Confidence            78888888888877                  55677899999999998     66  678888775

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.70  E-value=2.1e-16  Score=139.02  Aligned_cols=145  Identities=12%  Similarity=0.163  Sum_probs=79.8

Q ss_pred             CEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeee---EecceEECcc
Q psy9164         227 ATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENIT---VLGECIIGWK  301 (380)
Q Consensus       227 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~---~~~~~~ig~~  301 (380)
                      +.|++++.|++++.||++|.|+++ .+. ++.||++|.|+.++.|.+ +.||++|.|++++.+....   ....++||++
T Consensus       105 ~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~  183 (276)
T 3gos_A          105 FRVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN  183 (276)
T ss_dssp             CEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT
T ss_pred             cEECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCC
Confidence            333344444444444444444443 332 444455555555554433 5666666666666662210   0126888999


Q ss_pred             ceeCcceEEccceEECCCeEECcceEEcCCeeecce--------eecCcceeecceeEecCceEEeceeeeccccccCCC
Q psy9164         302 CVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK--------SIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSV  373 (380)
Q Consensus       302 ~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~--------~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~v  373 (380)
                      |+||.++.|.+++.||++++||++++|..++.+.+.        .|+++++++.+.+-.+++.+...+++     +.|++
T Consensus       184 v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A~-----iik~~  258 (276)
T 3gos_A          184 CFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAV-----IVKKV  258 (276)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSSCEEEEEE-----EEEEC
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCccCCCCcccccccE-----EEEEc
Confidence            999999888888888888888888888877654442        34444444211111134444333455     66777


Q ss_pred             CCCC
Q psy9164         374 PEPQ  377 (380)
Q Consensus       374 p~~~  377 (380)
                      ++.+
T Consensus       259 ~~~~  262 (276)
T 3gos_A          259 DAKT  262 (276)
T ss_dssp             CC--
T ss_pred             Chhh
Confidence            6654

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.70  E-value=1.5e-16  Score=132.62  Aligned_cols=114  Identities=17%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             CCCCEEcCCcEEe-ceEEccCCEECCCcEec----CeEEcCCCEECCceEEeeeeE------ecceEECccceeCcceEE
Q psy9164         242 GPGVVIEGGVCIK-RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRMENITV------LGECIIGWKCVVGQWVRM  310 (380)
Q Consensus       242 g~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i~~~~~------~~~~~ig~~~~ig~~~~i  310 (380)
                      ++++.|++++.|. ++.||+++.|++++.|.    .+.||++|.|++++.|.....      ..++.||++++|+.++.+
T Consensus        19 g~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i   98 (187)
T 3r3r_A           19 GQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVML   98 (187)
T ss_dssp             CTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEE
T ss_pred             CCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEE
Confidence            3333333333333 45566777777777774    359999999999999953211      257899999999999988


Q ss_pred             ccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeecccccc--CCCCCCCcc
Q psy9164         311 ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIG--SSVPEPQII  379 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~--~~vp~~~iv  379 (380)
                      .. ++||++++||+++.|.                  ++++||++++||++++     |+  +++|+++++
T Consensus        99 ~~-~~Ig~~~~Ig~~~~I~------------------~~~~Ig~~~~Ig~~s~-----V~~~~~i~~~~vv  145 (187)
T 3r3r_A           99 HG-CTIGNRVLVGMGSIVL------------------DGAIIEDDVMIGAGSL-----VPQHKRLESGYLY  145 (187)
T ss_dssp             ES-CEECSSEEECTTCEEC------------------TTCEECSSEEECTTCE-----ECTTCEECTTEEE
T ss_pred             eC-cEECCCCEECCCCEEC------------------CCCEECCCCEECCCCE-----ECCCcCcCCCcEE
Confidence            65 8888888888888883                  4455666777776666     55  556666553

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.69  E-value=2.7e-17  Score=137.61  Aligned_cols=78  Identities=15%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164         274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~  353 (380)
                      +||++|.||++|.|.+.     +...+......+..+...++||++||||++++|                  .++++||
T Consensus        98 ~IG~~~~Ig~~~~I~~~-----~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I------------------~~gv~IG  154 (195)
T 3nz2_A           98 TIGDHVLIGPSTQFYTA-----SHSLDYRRRQAWETICKPIVIEDDVWIGGNVVI------------------NQGVTIG  154 (195)
T ss_dssp             EECTTCEECTTCEEECE-----ECCSSGGGTTTCCCEECCEEECTTCEECTTCEE------------------CTTCEEC
T ss_pred             EECCCCEECCCCEEecC-----CCCcccccccccceecCCeEECCCCEEcCCCEE------------------CCCCEEC
Confidence            66777777777777432     223444444555556666777777777777777                  5667788


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||+||+     |++|+|+++++
T Consensus       155 ~~~vIgagsv-----V~~dvp~~~v~  175 (195)
T 3nz2_A          155 ARSVVAANSV-----VNQDVPPDTLV  175 (195)
T ss_dssp             TTCEECTTCE-----ECSCBCSSEEE
T ss_pred             CCCEECCCCE-----EccccCCCcEE
Confidence            8888888888     88888888765

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.69  E-value=1.7e-16  Score=132.55  Aligned_cols=75  Identities=15%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             ceEEccCCEECCCcEec----CeEEcCCCEECCceEEeeeeE------ecceEECccceeCcceEEccceEECCCeEECc
Q psy9164         255 RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRMENITV------LGECIIGWKCVVGQWVRMENITVLGEDVIVQD  324 (380)
Q Consensus       255 ~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i~~~~~------~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~  324 (380)
                      ++.||++|.|++++.|.    .+.||++|.|++++.|.+...      ...+.||++++|+.++.+.. ++||++++||+
T Consensus        37 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~  115 (189)
T 3r1w_A           37 DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGM  115 (189)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEES-CEECSSEEECT
T ss_pred             eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeC-cEECCCcEECC
Confidence            55667777777777774    359999999999999955321      23678999999999999876 88899999888


Q ss_pred             ceEEcC
Q psy9164         325 ELYVNG  330 (380)
Q Consensus       325 ~~~i~~  330 (380)
                      ++.|..
T Consensus       116 ~~~i~~  121 (189)
T 3r1w_A          116 KSMIMD  121 (189)
T ss_dssp             TCEECT
T ss_pred             CCEEcC
Confidence            888843

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.69  E-value=3.9e-16  Score=149.10  Aligned_cols=120  Identities=23%  Similarity=0.371  Sum_probs=80.3

Q ss_pred             cCCCccccceeeCCCCEECCCcEECC-----CcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCce
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGP-----NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWV  285 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~  285 (380)
                      .+++.|++++.|++++.||++|.|++     ++.||++|.|+ ++.+.++.||++|.|++++.|. +++||+++.||+++
T Consensus       278 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~  356 (468)
T 1hm9_A          278 APEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFV  356 (468)
T ss_dssp             CTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEE
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCc
Confidence            33344444444444444444444443     44566777777 7777788999999999999997 78899888887766


Q ss_pred             EEee-----------eeEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCe
Q psy9164         286 RMEN-----------ITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQ  332 (380)
Q Consensus       286 ~i~~-----------~~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~  332 (380)
                      .+.+           ..+.+++.||+++.||.++.+.+       .++||++|+||+++.|.+++
T Consensus       357 ~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v  421 (468)
T 1hm9_A          357 EVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPV  421 (468)
T ss_dssp             EEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSC
T ss_pred             EEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCc
Confidence            6643           33335567788888888877754       57777777777777775554

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.69  E-value=2.1e-16  Score=134.69  Aligned_cols=134  Identities=18%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             cceeeCCCCEECCC-cEECC---CcEECCCCEEcCCcEEe----ceEEccCCEECCCcEe----cCeEEcCCCEECCceE
Q psy9164         219 GNVLVDPTATIGPG-CRIGP---NVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWL----EGCIIGWKCVVGQWVR  286 (380)
Q Consensus       219 ~~~~i~~~~~i~~~-~~i~~---~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i----~~~~ig~~~~ig~~~~  286 (380)
                      ..+++++++.|.+. +.|.+   .+.||++|.|++++.+.    ++.||++|.|++.+.+    .+++||++|.|+++|+
T Consensus        35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~  114 (215)
T 2wlg_A           35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYE  114 (215)
T ss_dssp             CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEE
T ss_pred             CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEE
Confidence            45788888888777 55654   38899999999998886    3889999999985555    5689999999999999


Q ss_pred             EeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeecc
Q psy9164         287 MENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPH  366 (380)
Q Consensus       287 i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~  366 (380)
                      |.+...  +...  ....+........++||+++|||+++.|                  .++++||++++|+++++   
T Consensus       115 I~~~~~--h~~~--~~~~~~~~~~~~~v~Igd~v~IG~~~~I------------------~~gv~Ig~~~vIgagsv---  169 (215)
T 2wlg_A          115 IRNTDM--HPIY--SLENGERINHGKDVIIGNHVWLGRNVTI------------------LKGVCIPNNVVVGSHTV---  169 (215)
T ss_dssp             EESCCS--SCEE--ETTTCBBCCCCCCEEECTTCEECTTCEE------------------CTTCEECSSCEECTTCE---
T ss_pred             EECCCC--cccc--cccccccccCCCCeEECCCcEECCCCEE------------------CCCCEECCCCEECCCCE---
Confidence            964210  0000  0001112222334566666666666666                  45566777777777777   


Q ss_pred             ccccCCCCCCCcc
Q psy9164         367 KSIGSSVPEPQII  379 (380)
Q Consensus       367 ~~v~~~vp~~~iv  379 (380)
                        |++|+|+++++
T Consensus       170 --V~~~vp~~~i~  180 (215)
T 2wlg_A          170 --LYKSFKEPNCV  180 (215)
T ss_dssp             --ECSCCCCCSCE
T ss_pred             --EcCccCCCeEE
Confidence              77777777664

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.69  E-value=2.3e-16  Score=147.62  Aligned_cols=78  Identities=22%  Similarity=0.313  Sum_probs=56.0

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEe
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRME  288 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~  288 (380)
                      +.+.+.+.++++|++++.|++++.|+++++||++|.|++++.|.+++|++++.|++++.+.+++||+++.||+++.+.
T Consensus       253 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~  330 (401)
T 2ggo_A          253 IKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIA  330 (401)
T ss_dssp             ECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEEC
T ss_pred             ECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEc
Confidence            334555556666666777777777766777777777777777777777777777777777777777777777777775

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.68  E-value=2.9e-16  Score=139.89  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             CCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-cCeEEcCCCEECCceEEeeee---EecceEEC
Q psy9164         225 PTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRMENIT---VLGECIIG  299 (380)
Q Consensus       225 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~i~~~~---~~~~~~ig  299 (380)
                      +++.|.+++.|++++.||++|.|+++ .+. ++.||++|.|+.++.| .++.||++|.|++++.|....   ..+.++||
T Consensus       144 ~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IG  222 (316)
T 3tk8_A          144 GGFRVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE  222 (316)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEEC
T ss_pred             CCcEEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEEC
Confidence            34444444444444444444444443 222 3344555555444433 224455555555555442100   01248888


Q ss_pred             ccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEecee
Q psy9164         300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQ  362 (380)
Q Consensus       300 ~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~  362 (380)
                      ++|+||.++.|.+++.||++++||++++|+.++.+....-+.  ...+   .|+++++|.+|+
T Consensus       223 d~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~--v~~g---~Vp~gsvVvaGs  280 (316)
T 3tk8_A          223 DNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGE--VTYG---RIPAGSVVVAGN  280 (316)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCC--EECS---EECTTEEEEEEE
T ss_pred             CCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeeccccccc--cccc---EeCCCCEEECCC
Confidence            888888888888888888888888888887766443321110  1111   478888886664

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.68  E-value=3.7e-16  Score=128.34  Aligned_cols=100  Identities=16%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             ceEEccCCEECCCcEecC----eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcC
Q psy9164         255 RSTILRDAIVKSHSWLEG----CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNG  330 (380)
Q Consensus       255 ~~~i~~~~~i~~~~~i~~----~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~  330 (380)
                      ++.||+++.|++++.|..    +.||+++.|+++|.|.... ..++.||+++.|+.++.+.. ++||++++||+++.|  
T Consensus        28 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~-~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i--  103 (173)
T 1v3w_A           28 DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSH-GYPTEIGEYVTIGHNAMVHG-AKVGNYVIIGISSVI--  103 (173)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBT-TBCEEECSSCEECTTCEEES-CEECSSEEECTTCEE--
T ss_pred             CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecC-CCCeEECCCCEECCCCEECC-CEECCCCEECCCCEE--
Confidence            344555555555555543    6666666666666663311 11456666666666666643 556666666666655  


Q ss_pred             CeeecceeecCcceeecceeEecCceEEeceeeecccccc--CCCCCCCcc
Q psy9164         331 GQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIG--SSVPEPQII  379 (380)
Q Consensus       331 ~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~--~~vp~~~iv  379 (380)
                                      .++++||++++||++++     |+  +++|+++++
T Consensus       104 ----------------~~~~~Ig~~~~Ig~~s~-----V~~~~~i~~~~~v  133 (173)
T 1v3w_A          104 ----------------LDGAKIGDHVIIGAGAV-----VPPNKEIPDYSLV  133 (173)
T ss_dssp             ----------------CTTCEECSSEEECTTCE-----ECTTCEECTTEEE
T ss_pred             ----------------eCCCEECCCCEECCCCE-----ECCCcEeCCCcEE
Confidence                            34455666666666666     44  455665554

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.68  E-value=5.5e-16  Score=129.73  Aligned_cols=62  Identities=27%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             eeeCCCCEECCCcEEC--CCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEE
Q psy9164         221 VLVDPTATIGPGCRIG--PNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRM  287 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i  287 (380)
                      .+++|++.+++++.|+  +++.|+++|.|++++.     ||++|.|+.++.+. ++.||+++.|++++.|
T Consensus        76 ~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~-----IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i  140 (194)
T 3bfp_A           76 NLIHKSALISPSAIVEENAGILIMPYVVINAKAK-----IEKGVILNTSSVIEHECVIGEFSHVSVGAKC  140 (194)
T ss_dssp             CEECTTCEECTTCEECTTSCCEECTTCEECTTCE-----ECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cccCCeEEECCCceeCCCCCcEEcCCCEECCCCE-----ECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            3455555555555554  4445444444444332     34444444433332 3455555555555544

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.67  E-value=3.9e-16  Score=133.55  Aligned_cols=61  Identities=26%  Similarity=0.522  Sum_probs=28.0

Q ss_pred             eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEE
Q psy9164         222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRM  287 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i  287 (380)
                      ++++++.+++++.|++++.|++++.|++++.     ||++|.|+.++.|. ++.||++|.|++++.+
T Consensus       101 ~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~-----IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i  162 (220)
T 4ea9_A          101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSW-----IGDLAIINTGAVVDHDCRLGAACHLGPASAL  162 (220)
T ss_dssp             EECTTCEECTTCEECSSCEECTTCEECTTCE-----ECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cCCCCCEECCCCEECCCCEEcCCCEECCCCE-----ECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            4455555554444444444444444444332     23444444333331 3455555555555555

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.67  E-value=4.8e-17  Score=147.71  Aligned_cols=189  Identities=17%  Similarity=0.228  Sum_probs=138.8

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      ||+|+++.|.++ |+++++|++++. .+.+.+++.+. ..  .+  +..++...||+.++..+...+. .++.+++++||
T Consensus        36 li~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~-~~--~~--ii~e~~~~gta~ai~~a~~~~~-~~~~~lvl~~D  109 (336)
T 2x65_A           36 LMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPEL-PD--EN--IIAEPMKKNTAPACFIGTKLAD-DDEPVLVLPAD  109 (336)
T ss_dssp             HHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTS-CG--GG--EEEESSCCCHHHHHHHHHTTSC-TTCEEEEEETT
T ss_pred             HHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcc-cc--ce--EEeCCCCCCcHHHHHHHHHhhC-CCCEEEEEcCC
Confidence            689999999997 899999999986 57788888652 11  22  3456778899999998888662 24568999999


Q ss_pred             cccCC--Ch----HHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCC-----CceeEEEeCCCCCC--------CCeEE
Q psy9164          79 IICDF--PF----KDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH-----GCIESFIEKPQEFV--------SNKIN  139 (380)
Q Consensus        79 ~i~~~--~l----~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~-----~~v~~~~ek~~~~~--------~~~~~  139 (380)
                      +++..  +|    +++++.|++.++.+|+.+.+..++.+||++..+++     +++..|.|||....        ..+.+
T Consensus       110 ~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n  189 (336)
T 2x65_A          110 HRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESGRFLWN  189 (336)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEE
T ss_pred             ceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEEEEEEECCChHHHHHHHhcCCeEEE
Confidence            97754  34    44555677766777887777666688999988754     78999999987321        24789


Q ss_pred             EEEEEeCHhHH-hhccCCC-----------C---Ccccchhhh---------hhcC-CcEEEEEeccEEEecCChhhHHH
Q psy9164         140 AGMYIFNPSVL-DRIEIKP-----------T---SIEKEIFPL---------MSKE-KQLYAMELKGFWMDVGQPRDFLK  194 (380)
Q Consensus       140 ~giyi~~~~~l-~~l~~~~-----------~---~~~~~il~~---------l~~~-~~i~~~~~~~~~~~i~~~~~~~~  194 (380)
                      +|+|+|+++.| +.+..-.           .   ++..+.++.         ++++ .++++++.+++|.|+|++.+|.+
T Consensus       190 ~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~  269 (336)
T 2x65_A          190 SGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVRE  269 (336)
T ss_dssp             EEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHH
T ss_pred             eeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHh
Confidence            99999999876 4442100           0   112344554         4454 58999999999999999999876


Q ss_pred             H
Q psy9164         195 G  195 (380)
Q Consensus       195 a  195 (380)
                      +
T Consensus       270 ~  270 (336)
T 2x65_A          270 I  270 (336)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.67  E-value=2.3e-16  Score=131.52  Aligned_cols=78  Identities=17%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164         274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~  353 (380)
                      .||++|.|+++|.|.+.     +..++......+..+...++||++||||++++|                  .++++||
T Consensus       100 ~IG~~~~Ig~~~~I~~~-----~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I------------------~~gv~IG  156 (190)
T 3hjj_A          100 RIGDHCMFAPGVHIYTA-----THPLHPVERNSGKEYGKPVKIGNNVWVGGGAII------------------NPGVSIG  156 (190)
T ss_dssp             EECTTCEECTTCEEECE-----ECCSSHHHHTSSEEEECCEEECTTCEECTTCEE------------------CTTCEEC
T ss_pred             EECCceEEcCCcEEecC-----CccCchhhccccccccCCeEECCCCEECCCCEE------------------CCCCEEC
Confidence            56666666666666332     223344444555555566777777777777777                  4566788


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||+||+     |++|+|+++++
T Consensus       157 ~~~vIgagsv-----V~~dvp~~~v~  177 (190)
T 3hjj_A          157 DNAVIASGAV-----VTKDVPNNVVV  177 (190)
T ss_dssp             TTCEECTTCE-----ECSCBCTTEEE
T ss_pred             CCCEECCCCE-----ECcccCCCCEE
Confidence            8888888888     88888888765

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.66  E-value=9.2e-16  Score=137.67  Aligned_cols=124  Identities=15%  Similarity=0.168  Sum_probs=72.6

Q ss_pred             CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccce--
Q psy9164         238 NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENIT--  314 (380)
Q Consensus       238 ~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~--  314 (380)
                      ++.+++++.|++++.|. +++|+++|.|+++|+|.++.|++++.|++++.|.+..+.+++.++.++.+.+++.+..+.  
T Consensus        65 ~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~  144 (334)
T 2pig_A           65 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGL  144 (334)
T ss_dssp             TCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC----
T ss_pred             CeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeeccee
Confidence            34444444444444443 355577777788888888899999999999998555444444444444444444432210  


Q ss_pred             --EECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164         315 --VLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       315 --~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v  363 (380)
                        .+..++.|++++.|....+..+++|++++++.  +.+|++++.|+++++
T Consensus       145 ~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~--~svI~~~a~I~~~a~  193 (334)
T 2pig_A          145 THEHAQILQIYDRATVNHSRIVHQVQLYGNATIT--HAFIEHRAEVFDFAL  193 (334)
T ss_dssp             ----CCCEEECTTCEEESCEEETTCEECTTCEEE--SEEECTTCEECTTCE
T ss_pred             ecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe--CcEEcCCCEECCCcE
Confidence              12334666666666655555556666666652  455666666666665

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.66  E-value=9.3e-16  Score=130.45  Aligned_cols=74  Identities=14%  Similarity=0.159  Sum_probs=52.6

Q ss_pred             ceEEccCCEECCCcEec-----CeEEcCCCEECCceEEeeee---Eec------ceEECccceeCcceEEccceEECCCe
Q psy9164         255 RSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRMENIT---VLG------ECIIGWKCVVGQWVRMENITVLGEDV  320 (380)
Q Consensus       255 ~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~~~~---~~~------~~~ig~~~~ig~~~~i~~~~~ig~~~  320 (380)
                      ++.||++|.|++++.|.     ++.||++|.|+++|.|.+..   +.+      .+.||++++|+.++.+..+++||+++
T Consensus        57 ~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v  136 (213)
T 3kwd_A           57 DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGC  136 (213)
T ss_dssp             SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTTC
T ss_pred             ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCCC
Confidence            34556667777777763     47999999999999996421   111      37777777777777777777777777


Q ss_pred             EECcceEE
Q psy9164         321 IVQDELYV  328 (380)
Q Consensus       321 ~ig~~~~i  328 (380)
                      +||+++.|
T Consensus       137 ~IG~~a~I  144 (213)
T 3kwd_A          137 FIGFRSTV  144 (213)
T ss_dssp             EECTTCEE
T ss_pred             EECCCCEE
Confidence            77777766

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.66  E-value=1.9e-16  Score=132.91  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=39.7

Q ss_pred             EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164         274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~  353 (380)
                      .||++|.||++|.|....+     ..+......+..+...++||++||||.++.|                  .++++||
T Consensus        96 ~IG~~v~Ig~~~~I~~~~~-----~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I------------------~~gv~IG  152 (199)
T 3ftt_A           96 TIGDNVFIGPNCGFYTATH-----PLNFHHRNEGFEKAGPIHIGSNTWFGGHVAV------------------LPGVTIG  152 (199)
T ss_dssp             EECSSEEECTTCEEECEEC-----CSSHHHHHTTEEEECCEEECSSEEECTTCEE------------------CTTCEEC
T ss_pred             EECCCCEECCCCEEecCCC-----cCccccccccceecCCeEEcCCcEEcCCCEE------------------CCCCEEC
Confidence            5556666666666633221     1112222233333344555555555555555                  3445566


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||+||+     |++|+|+++++
T Consensus       153 ~~~vIgagsv-----V~~dvp~~~v~  173 (199)
T 3ftt_A          153 EGSVIGAGSV-----VTKDIPPHSLA  173 (199)
T ss_dssp             TTCEECTTCE-----ECSCBCTTEEE
T ss_pred             CCCEECCCCE-----ECcccCCCCEE
Confidence            6666666666     66666666554

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.64  E-value=1.8e-15  Score=131.47  Aligned_cols=119  Identities=14%  Similarity=0.226  Sum_probs=76.7

Q ss_pred             CCCEEcCCcEE-eceEEccCCEECCCcEec-----CeEEcCCCEECCceEEeeeeE------------------ecceEE
Q psy9164         243 PGVVIEGGVCI-KRSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRMENITV------------------LGECII  298 (380)
Q Consensus       243 ~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~~~~~------------------~~~~~i  298 (380)
                      +++.|++++.| +++.||+++.|++++.|.     ++.||++|.|+++|.|++...                  ...+.|
T Consensus        64 ~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~I  143 (247)
T 1qre_A           64 PTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYI  143 (247)
T ss_dssp             TTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEE
T ss_pred             CCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEE
Confidence            33333334433 255667777777777774     348999999999999975421                  135888


Q ss_pred             CccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccc
Q psy9164         299 GWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSI  369 (380)
Q Consensus       299 g~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v  369 (380)
                      |++++||.++.+..+++||++++||+++.|..      .+||+++ +++++++| +++.|++++++|+.++
T Consensus       144 G~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~------v~Ig~~~-~IgagsvV-~~~~I~~~~~v~~g~v  206 (247)
T 1qre_A          144 GNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK------SKVGNNC-VLEPRSAA-IGVTIPDGRYIPAGMV  206 (247)
T ss_dssp             CTTCEECTTCEEEEEEEECTTCEECTTCEEEE------EEECTTC-EECTTCEE-ESCEECTTBEECTTCE
T ss_pred             CCCCEECCCCEEcCCcEECCCCEECCCCEEec------eEECCCC-EECCCCEE-CCeEeCCCCEECCCCE
Confidence            99999999988887788888888888877732      3444443 22444444 4555556665544443

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.64  E-value=1.3e-15  Score=135.40  Aligned_cols=115  Identities=20%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             ccccceeeCCCCEECCCcEEC-----CCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC---------eEEcCCCE
Q psy9164         216 GIVGNVLVDPTATIGPGCRIG-----PNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG---------CIIGWKCV  280 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~ig~~~~  280 (380)
                      .|++++.|++++.|++++.|+     +++.||++|.|+.++.|+ ++.||++|.|+.++.+.+         ++||++|.
T Consensus       131 ~I~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~  210 (304)
T 3eg4_A          131 RAVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCF  210 (304)
T ss_dssp             EECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCE
T ss_pred             EEcCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCE
Confidence            344444444555555555444     455555555555555555 366666666666666654         77777777


Q ss_pred             ECCceEEeeeeEecceEECccceeCcceEEccceEECCCe-------EECcceEEcCCeeec
Q psy9164         281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV-------IVQDELYVNGGQVLP  335 (380)
Q Consensus       281 ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~-------~ig~~~~i~~~~v~~  335 (380)
                      ||++|.|     .+++.||+++.||+++.+.+++.|++++       .|++++++++|+++.
T Consensus       211 IG~~a~I-----~~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~  267 (304)
T 3eg4_A          211 IGARSEV-----VEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPG  267 (304)
T ss_dssp             ECTTCEE-----CTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEEC
T ss_pred             ECCCCEE-----cCCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEec
Confidence            7777776     4566677777777766666666666654       244444444444333

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.63  E-value=7.3e-16  Score=128.12  Aligned_cols=78  Identities=12%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164         274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~  353 (380)
                      .||++|.|+++|.|....+     ..+......+..+...++||++||||+++.|                  .++++||
T Consensus        98 ~IG~~~~Ig~~v~I~~~~h-----~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I------------------~~gv~IG  154 (188)
T 3srt_A           98 EIGDNVMLAPNVQIYTAYH-----PIDAQLRNSGIEYGSPVKIGDNVWIGGGVII------------------TPGITIG  154 (188)
T ss_dssp             EECSSCEECTTCEEECEEC-----CSSHHHHHTTEEEECCEEECSSCEECTTCEE------------------CTTCEEC
T ss_pred             EECCeeEECCCcEEeeCCc-----cCchhhccccceECCCcEECCCcEEcCCCEE------------------CCCcEEC
Confidence            5667777777777643211     1222222334444555667777777776666                  4556688


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||+|++     |++|+|+++++
T Consensus       155 ~~~vIgagsv-----V~~dvp~~~v~  175 (188)
T 3srt_A          155 DNVVIGAGSV-----VTKDIPPNTVA  175 (188)
T ss_dssp             SSEEECTTCE-----ECSCBCSSEEE
T ss_pred             CCCEECCCCE-----ECcccCCCCEE
Confidence            8888888888     77888877765

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.63  E-value=3.7e-15  Score=129.73  Aligned_cols=188  Identities=19%  Similarity=0.222  Sum_probs=138.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD~   79 (380)
                      ||+|+++.+.++|+++|+|+++  .+++++++.+    ++.++.+..++...||+. +..+...+.. ..+.++++.||.
T Consensus        36 li~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~----~g~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~  108 (256)
T 3tqd_A           36 MIQHVYESAIKSGAEEVVIATD--DKRIRQVAED----FGAVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDE  108 (256)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTC
T ss_pred             HHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----cCCeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCc
Confidence            6899999999999999999875  4788888754    477887777777788875 7777777731 256799999998


Q ss_pred             --ccCCChHHHHHHHHhc-CCcEEEEEEEcC------CCCceeEEEECCCCceeEEEeCCCCC--------------CCC
Q psy9164          80 --ICDFPFKDLVSFHKNH-GKEGTIVVTQVE------EPSKYGVVLYNEHGCIESFIEKPQEF--------------VSN  136 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~-~~~~tl~~~~~~------~~~~~g~v~~d~~~~v~~~~ek~~~~--------------~~~  136 (380)
                        +....+.++++.|++. ++.++.+..+..      ++..++ +..|++|+++.|.++|...              .+.
T Consensus       109 Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~  187 (256)
T 3tqd_A          109 PLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSH  187 (256)
T ss_dssp             CCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTTCGGGCCCSSCC
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccccccccccCCcc
Confidence              4456789999999874 456777777653      344444 4678999999999986521              246


Q ss_pred             eEEEEEEEeCHhHHhhccCC-CCCccc-chhhhh--hcCC-cEEEEEeccE-EEecCChhhHHHHH
Q psy9164         137 KINAGMYIFNPSVLDRIEIK-PTSIEK-EIFPLM--SKEK-QLYAMELKGF-WMDVGQPRDFLKGM  196 (380)
Q Consensus       137 ~~~~giyi~~~~~l~~l~~~-~~~~~~-~il~~l--~~~~-~i~~~~~~~~-~~~i~~~~~~~~a~  196 (380)
                      +...|+|.|++++|+.+..- +..++. +-+.+|  ++.+ ++..+..+++ |.+++||+|+.++.
T Consensus       188 ~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~  253 (256)
T 3tqd_A          188 YRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVR  253 (256)
T ss_dssp             EEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHH
T ss_pred             eEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHH
Confidence            89999999999999888543 333332 223222  3444 8888888875 89999999998764

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.63  E-value=9e-16  Score=128.28  Aligned_cols=79  Identities=11%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164         273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV  352 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i  352 (380)
                      +.||++|.|+++|.|....+.     .+......+..+...++||++||||++++|                  .++++|
T Consensus        96 i~IG~~v~Ig~~v~I~~~~h~-----~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I------------------~~gv~I  152 (203)
T 1krr_A           96 VTIGDNVLIAPNVTLSVTGHP-----VHHELRKNGEMYSFPITIGNNVWIGSHVVI------------------NPGVTI  152 (203)
T ss_dssp             EEECSSCEECSSCEEESEECC-----SSTTTCTTCCBEECCEEECTTCEECTTCEE------------------CTTCEE
T ss_pred             eEECCCCEECCCCEEecCCcc-----cchhhcccCceeCCCcEECCCeEECCCCEE------------------eCCeEE
Confidence            466666666666666432210     111111222233344555555565555555                  444556


Q ss_pred             cCceEEeceeeeccccccCCCCCCCcc
Q psy9164         353 QDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |++++||+||+     |++|+|+++++
T Consensus       153 G~~~vIgagsv-----V~~dvp~~~vv  174 (203)
T 1krr_A          153 GDNSVIGAGSI-----VTKDIPPNVVA  174 (203)
T ss_dssp             CTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             CCCCEECCCCE-----ECCCcCCCcEE
Confidence            66666666666     66666666654

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.63  E-value=3.6e-15  Score=130.38  Aligned_cols=190  Identities=14%  Similarity=0.150  Sum_probs=141.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD~   79 (380)
                      ||+|+++.+.++|+++|+|++.  .+++++++.+    ++.++.+..++...||+. +..+...+.. ..+.++++.||.
T Consensus        45 mi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~----~g~~v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~  117 (264)
T 3k8d_A           45 MIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEVCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDE  117 (264)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTC
T ss_pred             HHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----cCCEEEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCc
Confidence            6899999999999999999884  5778887754    467777766777888876 7777777631 256799999998


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCcee-----EEEECCCCceeEEEeCCCC-C------------CCCeEE
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYG-----VVLYNEHGCIESFIEKPQE-F------------VSNKIN  139 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g-----~v~~d~~~~v~~~~ek~~~-~------------~~~~~~  139 (380)
                        +....++++++.|++.+++++++..+.+++..++     .+.+|++|+++.|.++|.. .            ...+.+
T Consensus       118 Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~  197 (264)
T 3k8d_A          118 PMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRH  197 (264)
T ss_dssp             TTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHCSSCCCSCCEEE
T ss_pred             ccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCccccccccccCCcceEE
Confidence              5567799999999988888999998887654332     3567899999999999742 1            246899


Q ss_pred             EEEEEeCHhHHhhccCCC-CCccc-ch---hhhhhcCCcEEEEEe-ccEEEecCChhhHHHHHH
Q psy9164         140 AGMYIFNPSVLDRIEIKP-TSIEK-EI---FPLMSKEKQLYAMEL-KGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       140 ~giyi~~~~~l~~l~~~~-~~~~~-~i---l~~l~~~~~i~~~~~-~~~~~~i~~~~~~~~a~~  197 (380)
                      +|+|.|++++++.+.... ..++. +.   +..|....++..+.. ...|.+++||+|+.++..
T Consensus       198 ~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~  261 (264)
T 3k8d_A          198 LGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA  261 (264)
T ss_dssp             CSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHH
T ss_pred             EEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHH
Confidence            999999999998874332 22221 22   333333347888755 445899999999988754

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.62  E-value=3.6e-15  Score=130.04  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=74.9

Q ss_pred             CCcEECCCCEEcCCcEE-----eceEEccCCEECCCcEec---CeEEcCCCEECCceEEeeeeEecceEECccceeCcce
Q psy9164         237 PNVTIGPGVVIEGGVCI-----KRSTILRDAIVKSHSWLE---GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWV  308 (380)
Q Consensus       237 ~~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~---~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~  308 (380)
                      .++.|++++.|+..+.+     .+..||+++.|++++.+.   ++.||+++.|++++.|...  ..++.||++|.||+++
T Consensus        62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~--~~~~~IG~~~~Ig~~~  139 (252)
T 3jqy_B           62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTD--KCNVTIGHDCMIARDV  139 (252)
T ss_dssp             CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECS--SSEEEECTTCEECSSE
T ss_pred             CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeC--CCCeEECCCCEEcCCc
Confidence            34566666666655555     245677777777666662   4777777777777777310  0167777777777777


Q ss_pred             EEccc-------------------eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccc
Q psy9164         309 RMENI-------------------TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSI  369 (380)
Q Consensus       309 ~i~~~-------------------~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v  369 (380)
                      .+.+.                   ++||++|+||+++.|                  .++++||++++||+++++.    
T Consensus       140 ~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I------------------~~gv~IG~~~~IgagsvV~----  197 (252)
T 3jqy_B          140 ILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSI------------------MKGVSVGSGSVIGYGSIVT----  197 (252)
T ss_dssp             EEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEE------------------CTTCEECTTCEECTTCEEC----
T ss_pred             EEecCCCcccccccccccccccCCeEEecCcEECCCCEE------------------CCCCEECCCCEECCCCEEC----
Confidence            77654                   566666666666666                  4556677777777777664    


Q ss_pred             cCCCCCCCcc
Q psy9164         370 GSSVPEPQII  379 (380)
Q Consensus       370 ~~~vp~~~iv  379 (380)
                       +|+|+++++
T Consensus       198 -~~vp~~~~~  206 (252)
T 3jqy_B          198 -KDVPSMCAA  206 (252)
T ss_dssp             -SCBCTTEEE
T ss_pred             -cccCCCCEE
Confidence             345555543

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.62  E-value=4.7e-16  Score=141.24  Aligned_cols=185  Identities=19%  Similarity=0.231  Sum_probs=133.4

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC--CCCcEEEEe
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK--SQEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~--~~~~~lv~~   76 (380)
                      ||+|+++.|..+ |+++++|++++. .+.+.+++.+      ..+  ..++...||+.++..+.. +..  .++.|++++
T Consensus        37 li~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------~~~--i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~  107 (337)
T 2cu2_A           37 LLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------IRL--LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLP  107 (337)
T ss_dssp             HHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------SEE--EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEE
T ss_pred             HHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------Cce--EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEE
Confidence            689999999998 899999999985 4566666643      222  345678899999988877 421  246799999


Q ss_pred             CCcccCC--ChHHHHH----HHHhcCCcEEEEEEEcCCCCceeEEEECCC----CceeEEEeCCCCCC------C-CeEE
Q psy9164          77 SDIICDF--PFKDLVS----FHKNHGKEGTIVVTQVEEPSKYGVVLYNEH----GCIESFIEKPQEFV------S-NKIN  139 (380)
Q Consensus        77 gD~i~~~--~l~~~l~----~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~----~~v~~~~ek~~~~~------~-~~~~  139 (380)
                      ||+++..  .|.++++    .|++ ++.+|+...+..++.+||++..+++    +++..|.|||....      + .+.+
T Consensus       108 ~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n  186 (337)
T 2cu2_A          108 ADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWN  186 (337)
T ss_dssp             SSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEE
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCCCCCCceEEEECCcccccCeEEEEEeCCChHHHHHHhhcCCEEE
Confidence            9997653  3444444    4444 5677888777777789999988765    78999999986321      1 6899


Q ss_pred             EEEEEeCHhHH-hhccCCCCC----c--------ccchhhh---------hhcC-CcEEEEEeccEEEecCChhhHHHH
Q psy9164         140 AGMYIFNPSVL-DRIEIKPTS----I--------EKEIFPL---------MSKE-KQLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       140 ~giyi~~~~~l-~~l~~~~~~----~--------~~~il~~---------l~~~-~~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                      +|+|+|+++.| +.+......    +        ..+.++.         ++++ .+++.++.++.|.|+|++.+|.++
T Consensus       187 ~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~  265 (337)
T 2cu2_A          187 GGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERV  265 (337)
T ss_dssp             EEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHH
T ss_pred             EEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHH
Confidence            99999999887 554221000    0        1233443         4444 589999999999999999998765

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.61  E-value=2.1e-14  Score=122.71  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECC
Q psy9164         219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKS  266 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~  266 (380)
                      +.+.+++++.+++++.|+++++|+++++||++|.|. +++|++++.||+
T Consensus       104 ~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~  152 (220)
T 4ea9_A          104 PSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGA  152 (220)
T ss_dssp             TTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            333444444444444444444444444444444443 344444444443

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.60  E-value=4.4e-15  Score=129.80  Aligned_cols=180  Identities=20%  Similarity=0.282  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|++|.++|+++|+|++++..++++++...    +++++.+..+....||+++++.+.+++   + ++++++||.+
T Consensus        58 li~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~----~~~~iv~~~~~~~~g~~~al~~a~~~~---~-~~lv~~~D~~  129 (254)
T 1jyk_A           58 LIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK----YGVRLVFNDKYADYNNFYSLYLVKEEL---A-NSYVIDADNY  129 (254)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH----HCCEEEECTTTTTSCTHHHHHTTGGGC---T-TEEEEETTEE
T ss_pred             HHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHh----CCcEEEECCCccCCCcHHHHHHHHHHC---C-CEEEEeCCcc
Confidence            6899999999999999999999988887665432    356665555556789999999999888   3 4899999997


Q ss_pred             cCCC-hHHHHHHHHhcCCcEEEEEEEcCCC-CceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhc----c
Q psy9164          81 CDFP-FKDLVSFHKNHGKEGTIVVTQVEEP-SKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI----E  154 (380)
Q Consensus        81 ~~~~-l~~~l~~h~~~~~~~tl~~~~~~~~-~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l----~  154 (380)
                      +..+ +.+++    +.++.+|+   ...++ ..|+++ .|+++++..|.|+|.   ..++++|+|+|+++.++.+    +
T Consensus       130 ~~~~~~~~~~----~~~~~~t~---~~~~~~~~~~v~-~d~~g~v~~~~e~~~---~~~~~~Giy~~~~~~~~~l~~~l~  198 (254)
T 1jyk_A          130 LFKNMFRNDL----TRSTYFSV---YREDCTNEWFLV-YGDDYKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFID  198 (254)
T ss_dssp             ESSCCCCSCC----CSEEEEEC---EESSCSSCCEEE-ECTTCBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHH
T ss_pred             cCHHHHHHHH----hCCceEEE---EcccCCCCeEEE-ECCCCeEEEEEECCC---CCcEEEEEEEEcHHHHHHHHHHHH
Confidence            6555 33322    22222222   23344 367755 788899999999753   4688999999998754322    1


Q ss_pred             ----CC--CCCcccchhhhhhcCCcEEEEEec-cEEEecCChhhHHHHHHHH
Q psy9164         155 ----IK--PTSIEKEIFPLMSKEKQLYAMELK-GFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       155 ----~~--~~~~~~~il~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~a~~~~  199 (380)
                          .+  ...+..++++.+.+..++..+..+ ++|.+++++++|.++...+
T Consensus       199 ~~~~~~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l  250 (254)
T 1jyk_A          199 KAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL  250 (254)
T ss_dssp             HHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred             HHHhcCCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHh
Confidence                11  112234466666666789988887 7999999999998886543

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.60  E-value=5e-15  Score=128.46  Aligned_cols=111  Identities=21%  Similarity=0.312  Sum_probs=78.5

Q ss_pred             eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeee---eEecce
Q psy9164         221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENI---TVLGEC  296 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~---~~~~~~  296 (380)
                      ..+.+++.|++.+.|.+++.||++|.|+++++|. ++.++.+|.|...+.+ ++.||++|.|++++.|...   .....+
T Consensus       156 ~vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~~~~~~~~V  234 (332)
T 3fsy_A          156 YVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTLSGGGTHVI  234 (332)
T ss_dssp             TCCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECT-TCEECTTCEECTTCEECSBCC---CCBC
T ss_pred             eecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceec-ceEECCCCEECCCCEEcCCCCCCCccce
Confidence            4455556666666666666666666666666665 5666777777654443 3888899999998888542   112358


Q ss_pred             EECccceeCcceEEccceEECCCeEECcceEEcCCeee
Q psy9164         297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL  334 (380)
Q Consensus       297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~  334 (380)
                      .||++|+||.++.|  ++.||++|.||++++|..++++
T Consensus       235 ~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I  270 (332)
T 3fsy_A          235 SIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRV  270 (332)
T ss_dssp             EECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEE
T ss_pred             EECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            99999999999999  7888999998888888777644

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.59  E-value=4e-15  Score=130.08  Aligned_cols=109  Identities=17%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             eCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeee---eEecceEE
Q psy9164         223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENI---TVLGECII  298 (380)
Q Consensus       223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~---~~~~~~~i  298 (380)
                      +++++.|++.+.|.+++.||++|.|++++.|. ++.||++|.|..++.+. +.||++|.|++++.|.+.   .....+.|
T Consensus       181 I~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~~V~I  259 (347)
T 3r5d_A          181 VPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNIVISV  259 (347)
T ss_dssp             CCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC------CCCCEE
T ss_pred             ccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCCCCccceEE
Confidence            34444444444444444444445554444444 45557777777666554 888999999999888542   22235899


Q ss_pred             CccceeCcceEEccceEECCCeEECcceEEcCCeee
Q psy9164         299 GWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL  334 (380)
Q Consensus       299 g~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~  334 (380)
                      |++|+||.++.|  ++.||+++.||++++|..++++
T Consensus       260 Gdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          260 GEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             CTTCEECTTCEE--CSCBCTTCEECTTCEECTTCEE
T ss_pred             CCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            999999999998  7888888888888888777654

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.59  E-value=5e-14  Score=117.76  Aligned_cols=54  Identities=30%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             cccceeeCCCCEEC--CCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe
Q psy9164         217 IVGNVLVDPTATIG--PGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL  270 (380)
Q Consensus       217 i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  270 (380)
                      +++++++++++.|+  +++.|+++++|+++++||++|.|. ++.|++++.||++++|
T Consensus        78 i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I  134 (194)
T 3bfp_A           78 IHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHV  134 (194)
T ss_dssp             ECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEE
Confidence            44555555555555  555555555555555555555554 4555555555544433

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.58  E-value=1.1e-15  Score=130.31  Aligned_cols=46  Identities=17%  Similarity=0.270  Sum_probs=35.1

Q ss_pred             ccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         311 ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ...++||++||||+++.|                  .++++||++|+||++|+     |++|+|+++++
T Consensus       117 ~g~v~IG~~v~IG~~a~I------------------~~gv~IG~gavIgagsv-----V~~dVp~~~vv  162 (220)
T 4hur_A          117 KGDIEIGNDVWIGRDVTI------------------MPGVKIGDGAIIAAEAV-----VTKNVAPYSIV  162 (220)
T ss_dssp             CCCEEECSSCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             cCCeEECCCcEECCCCEE------------------eCCCEECCCCEEcCCCE-----EcccCCCCcEE
Confidence            345677777777777777                  55677888888888888     88888888775

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.57  E-value=4.7e-15  Score=139.46  Aligned_cols=84  Identities=17%  Similarity=0.286  Sum_probs=65.1

Q ss_pred             ECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCC
Q psy9164         241 IGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED  319 (380)
Q Consensus       241 ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~  319 (380)
                      +++++.|++++.+. ++.||++|.|++++.|.+++||++|.|+++|+|      .+++||++++|+.++.+.. ++||++
T Consensus       276 I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I------~~~vIG~~~~Ig~~a~I~g-v~IGd~  348 (496)
T 3c8v_A          276 SASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYI------INSRLERNCVTAHGGKIIN-AHLGDM  348 (496)
T ss_dssp             CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEE------EEEEEEESCEECTTCEEES-EEEEET
T ss_pred             cCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceE------eceEeCCCCEECCCcEEcC-ceECCC
Confidence            34444444444443 566788888888888888999999999999999      4788899999999988865 888888


Q ss_pred             eEECcceEEcCC
Q psy9164         320 VIVQDELYVNGG  331 (380)
Q Consensus       320 ~~ig~~~~i~~~  331 (380)
                      |+||+++.|..+
T Consensus       349 v~IG~~a~I~~~  360 (496)
T 3c8v_A          349 IFTGFNSFLQGS  360 (496)
T ss_dssp             CEECTTCEEECC
T ss_pred             cEECCCCEEeCC
Confidence            888888888655

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.57  E-value=3.8e-14  Score=122.77  Aligned_cols=76  Identities=25%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC---------eEEcCCCEE
Q psy9164         212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG---------CIIGWKCVV  281 (380)
Q Consensus       212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~ig~~~~i  281 (380)
                      .+++.+.+++.|++++.|++++.|++++.||++|.|+.++.|+ +++||++|.|++++.+.+         ++||++|.|
T Consensus        95 ~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~I  174 (240)
T 3r8y_A           95 EPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVI  174 (240)
T ss_dssp             CTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEE
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEE
Confidence            3444444444444444444444444445555555555455443 455555555555555533         455555555


Q ss_pred             CCceEE
Q psy9164         282 GQWVRM  287 (380)
Q Consensus       282 g~~~~i  287 (380)
                      |.+|.|
T Consensus       175 G~~~~I  180 (240)
T 3r8y_A          175 GANVVV  180 (240)
T ss_dssp             CTTCEE
T ss_pred             CCCCEE
Confidence            554444

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.56  E-value=1.7e-14  Score=126.85  Aligned_cols=98  Identities=12%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEec-eEEccCCEECCCcEec---------CeEEcCCCEECCceE
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR-STILRDAIVKSHSWLE---------GCIIGWKCVVGQWVR  286 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~ig~~~~ig~~~~  286 (380)
                      +.++++|++++.|+++ .+++++.||++|.|+.++.|++ +.||++|.|+.++.+.         +++||++|.||.+|.
T Consensus       113 I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~  191 (276)
T 3gos_A          113 VRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSE  191 (276)
T ss_dssp             EBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCE
T ss_pred             ECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCE
Confidence            3333333333333333 3333555555555555555542 5556666666555552         356666666666666


Q ss_pred             EeeeeEecceEECccceeCcceEEccceEECCCe
Q psy9164         287 MENITVLGECIIGWKCVVGQWVRMENITVLGEDV  320 (380)
Q Consensus       287 i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~  320 (380)
                      |     .+++.||+++.||+++.+..++.|++.+
T Consensus       192 I-----~~gv~IG~~avIgagsvV~~~~~I~~~~  220 (276)
T 3gos_A          192 V-----VEGVIVEEGSVISMGVFIGQSTRIYDRE  220 (276)
T ss_dssp             E-----CTTCEECTTCEECTTCEECTTCCEEETT
T ss_pred             E-----CCCCEECCCCEECCCCEECCCcEEcccc
Confidence            5     3355555555555555555555555444

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.55  E-value=6.8e-15  Score=121.22  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=45.0

Q ss_pred             eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164         273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV  352 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i  352 (380)
                      +.||++|.|+++|.|....+.-     +...-..+..+...++||++||||++++|                  .++++|
T Consensus        93 i~IG~~v~Ig~~v~I~~~~h~~-----~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I------------------~~gv~I  149 (182)
T 1ocx_A           93 IRIGDNCMLAPGVHIYTATHPI-----DPVARNSGAELGKPVTIGNNVWIGGRAVI------------------NPGVTI  149 (182)
T ss_dssp             EEECTTCEECTTCEEECEECCS-----SHHHHTTTCBEECCEEECTTCEECTTCEE------------------CTTCEE
T ss_pred             eEEcCCcEEeCCcEEEeCCCcc-----ChhhcccCccccCCeEEeCCeEECCCCEE------------------CCCcEE
Confidence            4666677777776664322110     00000112223344666666666666666                  455667


Q ss_pred             cCceEEeceeeeccccccCCCCCCCcc
Q psy9164         353 QDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |++++||+||+     |++|+|+++++
T Consensus       150 G~~~vIgagsv-----V~~dip~~~vv  171 (182)
T 1ocx_A          150 GDNVVVASGAV-----VTKDVPDNVVV  171 (182)
T ss_dssp             CTTCEECTTCE-----ECSCBCSSEEE
T ss_pred             CCCCEECCCCE-----ECCcCCCCcEE
Confidence            77777777777     77777777765

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.55  E-value=2.2e-14  Score=121.30  Aligned_cols=115  Identities=19%  Similarity=0.185  Sum_probs=74.8

Q ss_pred             cccCCCcccc--ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecCeEE-------c
Q psy9164         210 LLKEGDGIVG--NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEGCII-------G  276 (380)
Q Consensus       210 ~~~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~~i-------g  276 (380)
                      .+.+.+.+..  ++.|++++.|++++.|.+++.||++|.|++++.|.    +++||++|.|++++.|.++.-       .
T Consensus        40 ~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~  119 (205)
T 3vbi_A           40 LISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALM  119 (205)
T ss_dssp             EEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCC
T ss_pred             EECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCccccccc
Confidence            3455556655  67788888888888887788888889998888883    488899888888887743210       0


Q ss_pred             CCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       277 ~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      .....+.+..    ...+++.||++|+||.++.|.+++.||++++||+++.|
T Consensus       120 ~~~~~~~~~~----~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV  167 (205)
T 3vbi_A          120 GPTIPNQYKN----VKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMV  167 (205)
T ss_dssp             STTSCGGGCC----CEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred             Ccccccccce----eccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence            0111111111    11356777777777777666666666666665555555

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.55  E-value=1.5e-13  Score=119.39  Aligned_cols=191  Identities=14%  Similarity=0.162  Sum_probs=137.4

Q ss_pred             CHHHHH-HHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164           1 MLLHQI-EALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l-~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD   78 (380)
                      ||+|++ +.+.++++++|+|+++  .+++.+++.+    ++.++.+..+....|| +++..+...+.. ..+.++++.||
T Consensus        28 li~~~i~~~~~~~~~~~vvVvt~--~~~i~~~~~~----~g~~v~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD  100 (253)
T 4fcu_A           28 MILRVVDQAKKVEGFDDLCVATD--DERIAEICRA----EGVDVVLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGD  100 (253)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHT----TTCCEEECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTT
T ss_pred             hHHHHHHHHHHhcCCCEEEEECC--HHHHHHHHHH----cCCeEEEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCC
Confidence            689999 9999999999999986  3778877754    4667766556666777 478888887742 24668999999


Q ss_pred             c--ccCCChHHHHHHHHhcC-Cc-EEEEEE-----EcCCCCceeEEEECCCCceeEEEeCCC----C---------CCCC
Q psy9164          79 I--ICDFPFKDLVSFHKNHG-KE-GTIVVT-----QVEEPSKYGVVLYNEHGCIESFIEKPQ----E---------FVSN  136 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~-~~-~tl~~~-----~~~~~~~~g~v~~d~~~~v~~~~ek~~----~---------~~~~  136 (380)
                      .  +....+.++++.|++.. .. +|++..     ...+|..+. +..|++|+++.|.++|-    +         ....
T Consensus       101 ~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~k-vv~d~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~  179 (253)
T 4fcu_A          101 EPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVK-VVMSKQNEALYFSRATIPYDRDGAKRDEPTLHTQA  179 (253)
T ss_dssp             CTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCE-EEECTTSBEEEEESSCCSCCTTTSSSSSCCCCSCC
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccE-EEECCCCeEEEecCCCCCCCCCcccccccccccce
Confidence            8  44567899999998763 33 445443     134566654 56789999999998753    1         1245


Q ss_pred             eEEEEEEEeCHhHHhhccCCCCC-cc-cchhhhh--hcC-CcEEEEEeccE-EEecCChhhHHHHHHHH
Q psy9164         137 KINAGMYIFNPSVLDRIEIKPTS-IE-KEIFPLM--SKE-KQLYAMELKGF-WMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       137 ~~~~giyi~~~~~l~~l~~~~~~-~~-~~il~~l--~~~-~~i~~~~~~~~-~~~i~~~~~~~~a~~~~  199 (380)
                      +.++|+|.|++++|..+...+.+ ++ .|.+.+|  ++. .++..+..+++ |.++++|+|+.+++..+
T Consensus       180 ~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l  248 (253)
T 4fcu_A          180 FRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMP  248 (253)
T ss_dssp             EEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSC
T ss_pred             eEEEEEEEeCHHHHHHHHhCCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence            78999999999999887543222 22 1233333  244 48999999999 99999999998875443

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.55  E-value=3e-14  Score=126.85  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=32.0

Q ss_pred             CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe
Q psy9164         214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL  270 (380)
Q Consensus       214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  270 (380)
                      +..+.+++.|++++.||+++.|+++ +++.++.||++|.|. +++|+++|.||++|.|
T Consensus       145 ~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I  201 (316)
T 3tk8_A          145 GFRVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHL  201 (316)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEE
T ss_pred             CcEEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEE
Confidence            3445556666666666666666543 555556666666555 3555555555555555

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.53  E-value=1.5e-13  Score=118.75  Aligned_cols=186  Identities=17%  Similarity=0.222  Sum_probs=130.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|.++ +++|+|++++  +++.+++.+    . .++.+..++...|++.++ .+.+.+.  .+.+++++||. 
T Consensus        29 li~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~----~-~~~~~~~~~~~~g~~~~~-~~~~~~~--~~~vlv~~~D~P   97 (234)
T 2y6p_A           29 LIRWVVEGLVKT-GERVILATDS--ERVKEVVED----L-CEVFLTPSDLPSGSDRVL-YVVRDLD--VDLIINYQGDEP   97 (234)
T ss_dssp             HHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT----T-SEEEECCTTCCSHHHHHH-HHHTTCC--CSEEEECCTTCC
T ss_pred             HHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh----c-eEEEECCcccccchHHHH-HHHHhCC--CCEEEEecCCcC
Confidence            689999999999 9999999886  778888754    2 456555455567887765 4445553  56799999999 


Q ss_pred             ccC-CChHHHHHHHHhcCCcEEEEEEEc---CCCCceeEEEECCCCceeEEEeCCCCC-C-----CCeEEEEEEEeCHhH
Q psy9164          80 ICD-FPFKDLVSFHKNHGKEGTIVVTQV---EEPSKYGVVLYNEHGCIESFIEKPQEF-V-----SNKINAGMYIFNPSV  149 (380)
Q Consensus        80 i~~-~~l~~~l~~h~~~~~~~tl~~~~~---~~~~~~g~v~~d~~~~v~~~~ek~~~~-~-----~~~~~~giyi~~~~~  149 (380)
                      +.+ .+++++++.|++.++.+++.....   .++..++ +..++++++..|.|+|... .     ..+.++|+|+|+++.
T Consensus        98 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~  176 (234)
T 2y6p_A           98 FVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLDREGYALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKET  176 (234)
T ss_dssp             CCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEECTTSBEEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEcCCCCEeeeecCCCCcccccccceeeEEEEEEEcCHHH
Confidence            776 679999999988765455544421   1344444 3457789999999987431 1     357899999999998


Q ss_pred             HhhccCCC-CCcc-cc---hhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         150 LDRIEIKP-TSIE-KE---IFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       150 l~~l~~~~-~~~~-~~---il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                      +..+.... ..++ .+   .++.+....++.++..+++|.++++|++|..++..
T Consensus       177 l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~  230 (234)
T 2y6p_A          177 LMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEK  230 (234)
T ss_dssp             HHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHH
T ss_pred             HHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHH
Confidence            87653221 1111 11   12333345689999999999999999999887543

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.53  E-value=1.5e-14  Score=119.51  Aligned_cols=28  Identities=21%  Similarity=0.476  Sum_probs=15.7

Q ss_pred             cceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         347 GEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       347 ~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .++++||++++||+||+     |++|+|+++++
T Consensus       146 ~~gv~IG~~~vIgagsv-----V~~~vp~~~vv  173 (185)
T 2p2o_A          146 NPGVTIGDNAVIASGAV-----VTKDVPANAVV  173 (185)
T ss_dssp             CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             CCCCEECCCCEECCCCE-----ECCCCCCCcEE
Confidence            34445556666666666     55566655543

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.53  E-value=1.8e-14  Score=127.52  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             cccceeeCCCCEECCCcEE--CCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEec
Q psy9164         217 IVGNVLVDPTATIGPGCRI--GPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLG  294 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~  294 (380)
                      ...++.|++++.||+++.|  +.+++||++|.||++|.|     +.++           +||+++.+++++.+..+. ..
T Consensus       160 ~~~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I-----~~~v-----------tIG~~~~ig~~~~i~~~~-~~  222 (313)
T 3q1x_A          160 SYTSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRI-----YQSV-----------TLGAMHFQEEGGVIKRGT-KR  222 (313)
T ss_dssp             HHHCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEE-----CTTC-----------EEECCCCCCTTCCCCCCS-SC
T ss_pred             ecCCeEECCCCEECCCEEECCCCceEECCCcEECCCCEE-----CCCc-----------EEeCCcEECCCceEcCCC-cc
Confidence            3456666666666666666  334444444444444433     2222           333333333333332211 12


Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      +++||++|+||.++.|..+++||++++||++++|
T Consensus       223 ~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV  256 (313)
T 3q1x_A          223 HPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWI  256 (313)
T ss_dssp             SCEECSSCEECTTCEEESSCEECSSEEECTTCEE
T ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCCEE
Confidence            4566777777777766666666666666666665

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.52  E-value=1.8e-13  Score=131.46  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=39.5

Q ss_pred             CCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEcc-------ce
Q psy9164         243 PGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN-------IT  314 (380)
Q Consensus       243 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~-------~~  314 (380)
                      +++.+++.+.++ +++|++++.||.++.+.+++||+++.|++.+++      ++++||++|.||+++.+-+       .+
T Consensus       339 ~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i------~d~~Ig~~v~IG~g~i~~n~dg~~~~~t  412 (501)
T 3st8_A          339 DGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYV------GDADIGEYSNIGASSVFVNYDGTSKRRT  412 (501)
T ss_dssp             TTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEE------ESEEECSSCEECTTCEEECBCSSSBCCE
T ss_pred             cccccCCceeecCCcEEccccccCCeEEEccceecCCcEEecccee------cCceEcCCCEECCCEEEEcccCCcccCC
Confidence            334444444443 344444444444444444444444444444444      5566666666666665532       34


Q ss_pred             EECCCeEECcceEE
Q psy9164         315 VLGEDVIVQDELYV  328 (380)
Q Consensus       315 ~ig~~~~ig~~~~i  328 (380)
                      +||++|+||.++.|
T Consensus       413 ~IGd~~~iG~~~~l  426 (501)
T 3st8_A          413 TVGSHVRTGSDTMF  426 (501)
T ss_dssp             EECTTCEECTTCEE
T ss_pred             EECCCcEECCCCEE
Confidence            55555555544444

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.51  E-value=7.2e-13  Score=116.38  Aligned_cols=193  Identities=16%  Similarity=0.176  Sum_probs=134.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.++|+++|+|++++  +++.+++.+    .++++.+..+....|++ ++..+...+.. ..+.+++++||.
T Consensus        29 li~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~  101 (262)
T 1vic_A           29 MIQHVFEKALQSGASRVIIATDN--ENVADVAKS----FGAEVCMTSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDE  101 (262)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEECCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTC
T ss_pred             HHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh----cCCEEEECCccccCChH-HHHHHHHHhccCCCCEEEEEeCCc
Confidence            68999999999999999999875  567777654    35666443334556775 55556665532 145689999997


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCC-----CceeEEEECCCCceeEEEeCCC-----------------CCCC
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-----SKYGVVLYNEHGCIESFIEKPQ-----------------EFVS  135 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-----~~~g~v~~d~~~~v~~~~ek~~-----------------~~~~  135 (380)
                        +...++.++++.|.+.++++++++.+..++     ..+..+..+++|++..|.+++.                 .+..
T Consensus       102 P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~  181 (262)
T 1vic_A          102 PLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDA  181 (262)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTT
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCccccccccccccccccc
Confidence              456679999999988877888888777653     3455555577889998887641                 2223


Q ss_pred             CeEEEEEEEeCHhHHhhccCCCCC-cc-cchhh--hhh-cCCcEEEEEec-cEEEecCChhhHHHHHHHHH
Q psy9164         136 NKINAGMYIFNPSVLDRIEIKPTS-IE-KEIFP--LMS-KEKQLYAMELK-GFWMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       136 ~~~~~giyi~~~~~l~~l~~~~~~-~~-~~il~--~l~-~~~~i~~~~~~-~~~~~i~~~~~~~~a~~~~l  200 (380)
                      ...++|+|+|+++.+..+.....+ ++ .++++  .++ ...++..+..+ ++|.++++|+||..+...+.
T Consensus       182 ~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~  252 (262)
T 1vic_A          182 YLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA  252 (262)
T ss_dssp             CEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred             eEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence            579999999999988765322111 11 11222  133 34489999888 78999999999988865543

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.50  E-value=1.7e-14  Score=126.13  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=53.2

Q ss_pred             CCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECcccee
Q psy9164         226 TATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVV  304 (380)
Q Consensus       226 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~i  304 (380)
                      +..+++++.|++.++|.+++.|++++.|. .++|..+           +.||++|.|..++.+      + +.||+++.|
T Consensus       178 ~~vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~n-----------a~IGdg~iI~~~a~i------g-v~IGdnv~I  239 (347)
T 3r5d_A          178 DYVVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFN-----------AGTEGPGMIEGRVSA------G-VFVGKGSDL  239 (347)
T ss_dssp             GTCCCTTEEESSGGGBBTTEEECTTEEECTTCEECTT-----------EEESSSEEECSEECT------T-CEECTTEEE
T ss_pred             ceeccCCcEECCcCEECCCCEECCCCEECCCCEECCC-----------CEECCCcEEcCCceE------e-EEECCCCEE
Confidence            45566666666666666666655555543 2333333           333444444443332      2 556666666


Q ss_pred             CcceEEccc--------eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164         305 GQWVRMENI--------TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       305 g~~~~i~~~--------~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v  363 (380)
                      +.++.|...        ++||++|+||+++.|                    +++||++++||+|++
T Consensus       240 gpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--------------------GVtIGd~~iIGAGSV  286 (347)
T 3r5d_A          240 GGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--------------------GIPLGDRNIVEAGLY  286 (347)
T ss_dssp             CTTCEECC------CCCCEECTTCEECTTCEE--------------------CSCBCTTCEECTTCE
T ss_pred             CCCCEEccccCCCCccceEECCCCEECCCCEE--------------------eeEECCCCEECCCCE
Confidence            666665443        556666665555555                    234666666666666

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.50  E-value=3.9e-14  Score=122.87  Aligned_cols=33  Identities=12%  Similarity=0.179  Sum_probs=17.1

Q ss_pred             eEECccceeCcceEEccc--------eEECCCeEECcceEE
Q psy9164         296 CIIGWKCVVGQWVRMENI--------TVLGEDVIVQDELYV  328 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~--------~~ig~~~~ig~~~~i  328 (380)
                      +.||+++.|+.++.|...        +.||++|+||+|+.|
T Consensus       208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI  248 (332)
T 3fsy_A          208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL  248 (332)
T ss_dssp             CEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE
Confidence            455555555555555432        555555555555544

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.50  E-value=2.2e-14  Score=126.96  Aligned_cols=43  Identities=19%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++||++|+||+++.|                  .++++||++++||+|++     |++|+|+++++
T Consensus       224 ~~IGd~v~IGaga~I------------------lggv~IG~~a~IGagsv-----V~~dVp~gs~v  266 (313)
T 3q1x_A          224 PTVGDYVTIGTGAKV------------------LGNIIVGSHVRIGANCW-----IDRDVDSNQTV  266 (313)
T ss_dssp             CEECSSCEECTTCEE------------------ESSCEECSSEEECTTCE-----ECSCBCSSEEC
T ss_pred             CEECCCCEECCCCEE------------------CCCcEECCCCEECCCCE-----ECCCcCCCCEE
Confidence            466777777776666                  45667788888888888     77788777765

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.49  E-value=2.2e-14  Score=121.33  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             EECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEe-cCeEEcCCCEECCceEEeee----eEec----ceEE
Q psy9164         228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRMENI----TVLG----ECII  298 (380)
Q Consensus       228 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~i~~~----~~~~----~~~i  298 (380)
                      .+.+++.+++++.||+++.|++...   +.+ +++.+...+.+ ..+.||++|.|+++++|...    ...+    .+.+
T Consensus        24 ~~l~~~~~~~~i~IG~~t~i~~~~~---~~~-~~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i   99 (219)
T 4e8l_A           24 QFIKPTITNENILVGEYSYYDSKRG---ESF-EDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLF   99 (219)
T ss_dssp             EESGGGCCSSSEEECTTCEEECSSS---CCG-GGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGG
T ss_pred             EEccCcEECCCEEECCccEEcCCcC---cee-cceEEeecceeCCCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEe
Confidence            3334444444444455554444311   111 23333333333 24677777777777777321    0000    0112


Q ss_pred             Ccc----ceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCC
Q psy9164         299 GWK----CVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVP  374 (380)
Q Consensus       299 g~~----~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp  374 (380)
                      +++    +.+.....+..+++||++|+||.++.|                  .++++||++++||++++     |++|+|
T Consensus       100 ~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~a~I------------------~~gv~IG~~~~Igagsv-----V~~dv~  156 (219)
T 4e8l_A          100 RMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTI------------------MPGVKIGDGAIIAAEAV-----VTKNVA  156 (219)
T ss_dssp             CTTCGGGCCCTTTSCCCCCEEECSSCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBC
T ss_pred             cCcccccccccccccccCCcEECCCeEECCCCEE------------------cCCCEECCCCEECCCCE-----EcccCC
Confidence            222    122223344455777777777777777                  56678999999999999     899999


Q ss_pred             CCCcc
Q psy9164         375 EPQII  379 (380)
Q Consensus       375 ~~~iv  379 (380)
                      +++++
T Consensus       157 ~~~~~  161 (219)
T 4e8l_A          157 PYSIV  161 (219)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            98875

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.48  E-value=9.2e-14  Score=122.70  Aligned_cols=44  Identities=25%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164         314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      ++||++|+||+++.|                  .++++||++++||+|++     |++|+|++++|+
T Consensus       252 ~~IGd~V~IGaga~I------------------l~gv~IGd~a~IGagsv-----V~~dVp~~svv~  295 (310)
T 3f1x_A          252 PILEDDVIVYSNATI------------------LGRVTIGKGATVGGNIW-----VTENVPAGSRIV  295 (310)
T ss_dssp             CEECTTCEECTTCEE------------------ESSCEECTTCEECSSCE-----ECSCBCTTCEEC
T ss_pred             CEECCCcEEcCCCEE------------------CCCcEECCCCEECCCCE-----ECCccCCCcEEE
Confidence            456666666666666                  45566777777777777     777787777763

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.47  E-value=7.4e-15  Score=124.57  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=37.8

Q ss_pred             CcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         305 GQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       305 g~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ..++.+...++||++||||+++.|                  .++++||++++||+||+     |++|+|+++++
T Consensus       103 ~~~~~~~g~v~IG~~v~IG~~a~I------------------~~gv~IG~~~iIgagsv-----V~~dVp~~~vv  154 (212)
T 3eev_A          103 RDGFTRSGDTIIGHDVWIGTEAMI------------------MPGVKIGHGAIIASRSV-----VTKDVAPYEVV  154 (212)
T ss_dssp             CCCCCCCCCEEECSSCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             cCCcccCCCeEECCCCEECCCCEE------------------cCCCEECCCCEECCCCE-----EccccCCCcEE
Confidence            344444555777777777777776                  56677888888888888     88888888775

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.44  E-value=2.1e-13  Score=129.54  Aligned_cols=130  Identities=12%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECcc
Q psy9164         222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWK  301 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~  301 (380)
                      .+++++.|++++.|      ++++.| .++.|.++.||++|.|+. +.+.+++||++|.||++|.|.+     .++++++
T Consensus       304 ~~~~~~~i~~~~~i------~~~~~i-~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~-----~~~~~~~  370 (451)
T 1yp2_A          304 FYDRSAPIYTQPRY------LPPSKM-LDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED-----SLLMGAD  370 (451)
T ss_dssp             SCCSSSCCCCCCCC------CCCEEE-EEEEEEEEEECTTCEEEE-EEEESCEECTTCEECTTCEEES-----CEECCCS
T ss_pred             ccCCCCeeccCCcc------CCCeEE-cceEEeCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcC-----ceEECCC
Confidence            34445555444444      444445 466777888999999986 8888999999999999999954     2333331


Q ss_pred             -ceeCc-----------ceEEccceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEecCce-EEeceeeecc
Q psy9164         302 -CVVGQ-----------WVRMENITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQDEL-YVNGGQVLPH  366 (380)
Q Consensus       302 -~~ig~-----------~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~~~~-~i~~~~v~p~  366 (380)
                       ..+.+           .+.|+.++.|+ ++.||++|+||+++++... .++... .++.++.||.++ +||.++++|.
T Consensus       371 ~~~~~~~~~~~~~~g~~~~~Ig~~~~i~-~~~Ig~~~~IG~~~~i~~~~~~~~~~-~ig~~~~ig~~~v~Ig~~a~i~a  447 (451)
T 1yp2_A          371 YYETDADRKLLAAKGSVPIGIGKNCHIK-RAIIDKNARIGDNVKIINKDNVQEAA-RETDGYFIKSGIVTVIKDALIPS  447 (451)
T ss_dssp             SCCCHHHHHHHHTTTCCCSEECTTCEEE-SEEECTTCEECTTCEECCSSCCSCEE-EGGGTEEEETTEEEECTTCEECT
T ss_pred             CcccccccccccccCceeEEECCCCEEe-ccEeCCCcEECCCCEEeCCcccccCc-eeCCCEEEcCCEEEECCCcEECC
Confidence             00000           03444446664 5889999999988877653 343333 445555555553 3455555433

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.42  E-value=7.8e-12  Score=108.63  Aligned_cols=191  Identities=17%  Similarity=0.185  Sum_probs=131.6

Q ss_pred             CHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGV-REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.+.++|+ ++|+|++++  +++.+++.+    .++++....++...|+++++ .+...+.  .+.+++++||.
T Consensus        29 li~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~~~~~--~~~~lv~~~D~   99 (245)
T 1h7e_A           29 MIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA----FGGKAIMTRNDHESGTDRLV-EVMHKVE--ADIYINLQGDE   99 (245)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH----TTCEEEECCSCCSSHHHHHH-HHHHHSC--CSEEEECCTTC
T ss_pred             HHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH----cCCeEEeCCCccCCcHHHHH-HHHHhCC--CCEEEEEcCCc
Confidence            68999999999996 999999986  777777754    35666544455667886654 4444453  56799999998


Q ss_pred             --ccCCChHHHHHHHHhc-CCcEEEEEEEcC-----CCCceeEEEECCCCceeEEEeCCCC-CC-----CCeEEEEEEEe
Q psy9164          80 --ICDFPFKDLVSFHKNH-GKEGTIVVTQVE-----EPSKYGVVLYNEHGCIESFIEKPQE-FV-----SNKINAGMYIF  145 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~-~~~~tl~~~~~~-----~~~~~g~v~~d~~~~v~~~~ek~~~-~~-----~~~~~~giyi~  145 (380)
                        +...++.++++.|++. ++++++++.+..     ++.... +..++++++..|.+++.. .+     ..+.++|+|+|
T Consensus       100 P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~  178 (245)
T 1h7e_A          100 PMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVK-VVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAY  178 (245)
T ss_dssp             TTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCE-EEECTTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEE
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcE-EEECCCCcEEEeecCCCCCCcccccCceeEEEEEEEc
Confidence              3456699999999887 677777776651     222222 233678899999886432 12     25789999999


Q ss_pred             CHhHHhhccC-CCCCcc-cchhhhhh--c-CCcEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164         146 NPSVLDRIEI-KPTSIE-KEIFPLMS--K-EKQLYAMELKGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       146 ~~~~l~~l~~-~~~~~~-~~il~~l~--~-~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                      +++.+..+.. ....++ .+.++.+.  + ..++..+..++.|.++++|+||..+...+..
T Consensus       179 ~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~  239 (245)
T 1h7e_A          179 RRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ  239 (245)
T ss_dssp             EHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence            9998755431 111111 13333332  3 4589999988899999999999888665443

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.41  E-value=5.8e-14  Score=118.14  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=37.5

Q ss_pred             cceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         306 QWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       306 ~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ..+.+..+++||++|+||.++.|                  .++++||++++||++++     |++|+|+++++
T Consensus       106 ~~~~~~~~v~Ig~~v~IG~~a~I------------------~~gv~Ig~~~~Igags~-----V~~~v~~~~i~  156 (209)
T 1mr7_A          106 DQLPIKGDTIIGNDVWIGKDVVI------------------MPGVKIGDGAIVAANSV-----VVKDIAPYMLA  156 (209)
T ss_dssp             GGSCCCCCEEECSSCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             ccccccCCcEECCCCEEcCCCEE------------------cCCCEECCCCEEcCCCE-----EcCCCCCCeEE
Confidence            33444555667777777777766                  55677889999999988     88888888775

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.41  E-value=3.5e-13  Score=117.43  Aligned_cols=86  Identities=12%  Similarity=0.071  Sum_probs=42.6

Q ss_pred             ECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeE---ecceEECccceeC
Q psy9164         229 IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITV---LGECIIGWKCVVG  305 (380)
Q Consensus       229 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~---~~~~~ig~~~~ig  305 (380)
                      +..++.|++++.||++|.|+.+.   +++||+++           .||++|.|+++++|++...   ..+++||++|+||
T Consensus       161 ~~~gi~I~p~a~IG~~v~I~hg~---gvvIG~~~-----------~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IG  226 (287)
T 3mc4_A          161 SIFQTDIHPAARLGSGLFLDHAT---GLVVGETA-----------VVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIG  226 (287)
T ss_dssp             HHTCCEECTTCEECSSCEEESCT---TCEECTTC-----------EECSSCEEETTCEEEC-----CCCSCEECTTCEEC
T ss_pred             eccCeEECCCCEECCCeEEccCC---CeEECCCe-----------EECCCCEEcCCCEEcCCcccCCCcCCEECCCCEEC
Confidence            33455555555555555554221   33344443           4444445555555533211   1235666666666


Q ss_pred             cceEEccceEECCCeEECcceEE
Q psy9164         306 QWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       306 ~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      .++.|..+++||++++||++++|
T Consensus       227 aga~Il~gv~IG~~a~IGagsvV  249 (287)
T 3mc4_A          227 AGAKILGNIQVGQCSKIAAGSVV  249 (287)
T ss_dssp             TTCEEESSCEECTTCEECTTCEE
T ss_pred             CCCEECCCcEECCCCEECCCCEE
Confidence            66666655555555555555555

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.41  E-value=9e-13  Score=110.07  Aligned_cols=119  Identities=16%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecCe-EEcCCCEECCceEEeeeeE
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEGC-IIGWKCVVGQWVRMENITV  292 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~-~ig~~~~ig~~~~i~~~~~  292 (380)
                      ++.+++|.+++.+    .++.++.||++|.|+.+|.|.   .+.||++|.|++++.|... ...+......+..+     
T Consensus        58 ig~~~~I~~~~~~----~~g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~-----  128 (203)
T 1krr_A           58 VGENAWVEPPVYF----SYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMY-----  128 (203)
T ss_dssp             CCSSCEECSCEEE----SCSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBE-----
T ss_pred             cCCCcEEcCCeEE----EeCCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCcee-----
Confidence            4445555555432    234555666666666666554   4688999988888877432 11222222222222     


Q ss_pred             ecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      ...+.||++|+||.++.|.+++.||++++||++++|      .+. |++++++.|.|++
T Consensus       129 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV------~~d-vp~~~vv~G~PAr  180 (203)
T 1krr_A          129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIV------TKD-IPPNVVAAGVPCR  180 (203)
T ss_dssp             ECCEEECTTCEECTTCEECTTCEECTTCEECTTCEE------CSC-BCTTEEEETTTTE
T ss_pred             CCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEE------CCC-cCCCcEEEccCcE
Confidence            345666777777777666666665555555555554      433 4555555555444

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.40  E-value=7.3e-13  Score=114.71  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=28.5

Q ss_pred             HhHHhhCCCCCcEE--EEeCCcccCCChHHHHHHHHhcC
Q psy9164          60 LAKDILNKSQEPFF--VLNSDIICDFPFKDLVSFHKNHG   96 (380)
Q Consensus        60 ~a~~~i~~~~~~~l--v~~gD~i~~~~l~~~l~~h~~~~   96 (380)
                      .|+....  .|++|  ++++|++...+|.++|.+|...+
T Consensus        12 ea~~~~~--~EP~L~~~l~~~IL~~~~l~~aLa~~la~k   48 (267)
T 1ssq_A           12 EAKELAE--NEPMLASFFHSTILKHQNLGGALSYLLANK   48 (267)
T ss_dssp             HHHHHHH--HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred             HHHHHHh--cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence            3444454  78898  99999999999999999998765

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.40  E-value=1.3e-12  Score=117.93  Aligned_cols=59  Identities=24%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             CeEEcCCCEECCceEEeeeeEec----ceEECccceeCcceEEccceEECCCeEECcceEEcCCee
Q psy9164         272 GCIIGWKCVVGQWVRMENITVLG----ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV  333 (380)
Q Consensus       272 ~~~ig~~~~ig~~~~i~~~~~~~----~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v  333 (380)
                      +++||++|.|++++.|.+. ..+    .++||++|+||.++.  .++.||++++||++++|..++.
T Consensus       264 ~vvIGdnv~Ig~ga~I~g~-l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~  326 (387)
T 2rij_A          264 SAIVGEGSDVGGGASILGV-LSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTK  326 (387)
T ss_dssp             TCEECTTCEECTTCEECCB-CSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCE
T ss_pred             CCEECCCCEECCCceEcce-ecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCce
Confidence            3456666666666654321 112    278888888888887  6677777777777777765543

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.39  E-value=2.2e-13  Score=116.09  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=22.2

Q ss_pred             ecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      .++++||++|+||.++.|.+++.||+++.||+++.|
T Consensus       117 ~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV  152 (220)
T 4hur_A          117 KGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVV  152 (220)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEE
Confidence            355667777777777666666655555555555554

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.38  E-value=2.6e-12  Score=110.74  Aligned_cols=178  Identities=16%  Similarity=0.249  Sum_probs=115.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCC-CCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENE-PLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~-~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.++ +++|+|++ +..+++.+++.+   .++..+.+..++. ..|++++++.+.+.+   ++++++++||.
T Consensus        47 li~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~---~~~~~~~~v~~~~~~~g~~~~i~~a~~~~---~~~~lv~~~D~  118 (232)
T 2xme_A           47 IILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLK---DKGFNYKIVRHDRPEKGNGYSLLVAKNHV---EDRFILTMGDH  118 (232)
T ss_dssp             HHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHT---TSCCCEEEEECSCGGGCHHHHHHTTGGGC---CSSEEEEETTE
T ss_pred             HHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHH---hcCCcEEEEECCCCCCCcHHHHHHHHHHC---CCCEEEEcCCc
Confidence            689999999999 99999999 777788777633   2344556665544 379999999999998   47899999999


Q ss_pred             ccCCCh-HHHHHHHHhcCCcEEEEEEE--cCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC
Q psy9164          80 ICDFPF-KDLVSFHKNHGKEGTIVVTQ--VEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK  156 (380)
Q Consensus        80 i~~~~l-~~~l~~h~~~~~~~tl~~~~--~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~  156 (380)
                      .++.++ +++++    .. . +++...  ..++..++.+..+ ++++..+.|++.  ..+++++|+|++++++|+.+...
T Consensus       119 p~~~~~~~~l~~----~~-~-~~~~~~~~~~~~~~~~~v~~~-~g~v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~  189 (232)
T 2xme_A          119 VYSQQFIEKAVR----GE-G-VIADREPRFVDIGEATKIRVE-DGRVAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKL  189 (232)
T ss_dssp             EECHHHHHHHTT----CC-E-EEEESSCSSSCTTTSCEEEEE-TTEEEEEETTCS--SCSEEEEEEEEECTTHHHHHGGG
T ss_pred             ccCHHHHHHHHh----CC-C-cEEEccccccCCCcceEEEEc-CCEEEEeecCCC--CcceEEEEEEEECHHHHHHHHHH
Confidence            765442 33333    21 1 222111  1133456666665 788999988764  35788999999999999876542


Q ss_pred             CCCcccchhhhhhcCCcEEEEEec-cEEEecCChhhHHHHH
Q psy9164         157 PTSIEKEIFPLMSKEKQLYAMELK-GFWMDVGQPRDFLKGM  196 (380)
Q Consensus       157 ~~~~~~~il~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~a~  196 (380)
                      ...-+ .-+..+++++++..+..+ ++|.+++||++|.+++
T Consensus       190 ~~~g~-~~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~  229 (232)
T 2xme_A          190 RDREE-IPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN  229 (232)
T ss_dssp             TTSSC-CCHHHHHHHHTCBEEECCSCCEEEEECC-------
T ss_pred             HhcCh-hHHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHH
Confidence            21111 123344444455555554 6899999999987664

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.37  E-value=1.3e-12  Score=114.05  Aligned_cols=34  Identities=12%  Similarity=0.274  Sum_probs=28.3

Q ss_pred             hHHhhCCCCCcEE--EEeCCcccCCChHHHHHHHHhcC
Q psy9164          61 AKDILNKSQEPFF--VLNSDIICDFPFKDLVSFHKNHG   96 (380)
Q Consensus        61 a~~~i~~~~~~~l--v~~gD~i~~~~l~~~l~~h~~~~   96 (380)
                      |+....  .+++|  ++++|++...+|.++|.+|...+
T Consensus        33 a~~~~~--~EP~L~~~l~~~IL~~~~l~~aLa~~La~k   68 (289)
T 1t3d_A           33 ARTLAD--CEPMLASFYHATLLKHENLGSALSYMLANK   68 (289)
T ss_dssp             HHHHHH--HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHh--cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence            344454  78999  99999999999999999998765

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.36  E-value=7.7e-13  Score=111.25  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=39.4

Q ss_pred             ceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         302 CVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       302 ~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      +.++.++.+...++||++|+||.++.|                  .++++||++++||++|+     |++|+|+++++
T Consensus        99 ~~i~~~~~~~~~v~IG~~v~IG~~a~I------------------~~gv~Ig~~~~Igagsv-----V~~~vp~~~~~  153 (212)
T 1xat_A           99 AGAVNGYQPAGDTLIGHEVWIGTEAMF------------------MPGVRVGHGAIIGSRAL-----VTGDVEPYAIV  153 (212)
T ss_dssp             GGCCCCCCCCCCEEECTTCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             cccccCceecCCeEECCCCEECCCCEE------------------eCCCEECCCCEECCCCE-----EcccCCCCcEE
Confidence            334455555555777777777777777                  56677888888888888     88888888765

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.36  E-value=2.2e-12  Score=107.75  Aligned_cols=89  Identities=16%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             ECCCcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecceEECccceeCcceEE
Q psy9164         235 IGPNVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRM  310 (380)
Q Consensus       235 i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i  310 (380)
                      ++.++.||++|.|++++.|.   .++||++|.|++++.|.. +...+......++.+     .+.++||++|+||.++.|
T Consensus        73 ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~-----~~~v~IG~~v~IG~~~~I  147 (195)
T 3nz2_A           73 FGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETI-----CKPIVIEDDVWIGGNVVI  147 (195)
T ss_dssp             CSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCE-----ECCEEECTTCEECTTCEE
T ss_pred             eCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCccccccccccee-----cCCeEECCCCEEcCCCEE
Confidence            44445555555555555553   347888888888877744 344444444444444     346677777777777666


Q ss_pred             ccceEECCCeEECcceEE
Q psy9164         311 ENITVLGEDVIVQDELYV  328 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~i  328 (380)
                      .+++.||+++.||++++|
T Consensus       148 ~~gv~IG~~~vIgagsvV  165 (195)
T 3nz2_A          148 NQGVTIGARSVVAANSVV  165 (195)
T ss_dssp             CTTCEECTTCEECTTCEE
T ss_pred             CCCCEECCCCEECCCCEE
Confidence            665655555555555554

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.33  E-value=3.9e-12  Score=105.80  Aligned_cols=116  Identities=11%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecc
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGE  295 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~  295 (380)
                      +++|++++.+.    ++.++.||+++.|+++|.|.   ++.||++|.|++++.|.. +..++......++.+     .+.
T Consensus        64 ~~~I~~~~~~~----~g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~-----~~~  134 (190)
T 3hjj_A           64 KAQINPDFRCD----YGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEY-----GKP  134 (190)
T ss_dssp             CCEECSSCEES----SSTTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEE-----ECC
T ss_pred             CcEECCCEEEE----eCCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccc-----cCC
Confidence            55555555541    13444555555555555553   456888888888877744 333333333333333     345


Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +.||++|+||.++.|.+++.||++++||++++|      .+. +++++++.|.|++
T Consensus       135 v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV------~~d-vp~~~v~~G~Pa~  183 (190)
T 3hjj_A          135 VKIGNNVWVGGGAIINPGVSIGDNAVIASGAVV------TKD-VPNNVVVGGNPAK  183 (190)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEE------CSC-BCTTEEEETTTTE
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCCEE------Ccc-cCCCCEEEccCCE
Confidence            667777777777666666666666665555555      333 4444455444443

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.31  E-value=6.2e-12  Score=106.86  Aligned_cols=117  Identities=12%  Similarity=0.111  Sum_probs=69.7

Q ss_pred             eeeCCCCEECCCcEECC---CcEECCCCEEcCCcEE----eceEEccCCEECCCcEecCeEEcCCCE----ECCceEEee
Q psy9164         221 VLVDPTATIGPGCRIGP---NVTIGPGVVIEGGVCI----KRSTILRDAIVKSHSWLEGCIIGWKCV----VGQWVRMEN  289 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i----~~~~i~~~~~i~~~~~i~~~~ig~~~~----ig~~~~i~~  289 (380)
                      +.|++++.|++++.+..   ++.||++|.|++.+.+    .+++||++|.|++++.|.++.  .+..    .+...    
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~--~h~~~~~~~~~~~----  132 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTD--MHPIYSLENGERI----  132 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCC--SSCEEETTTCBBC----
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCC--Ccccccccccccc----
Confidence            56666666666666642   3788888888885555    467888888888877775431  0000    01111    


Q ss_pred             eeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceee-cceeE
Q psy9164         290 ITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHML-GEDVI  351 (380)
Q Consensus       290 ~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~-~~~v~  351 (380)
                       ...+.+.||++++||.++.+.+++.||+++.||+++.+      .+. +++++++. |.|++
T Consensus       133 -~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV------~~~-vp~~~i~~aG~Pa~  187 (215)
T 2wlg_A          133 -NHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVL------YKS-FKEPNCVIAGSPAK  187 (215)
T ss_dssp             -CCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEE------CSC-CCCCSCEEETTTTE
T ss_pred             -cCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEE------cCc-cCCCeEEEcccCCE
Confidence             11245677777777777666666665555555555544      432 56666666 65554

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.31  E-value=8.7e-12  Score=108.63  Aligned_cols=85  Identities=16%  Similarity=0.222  Sum_probs=54.9

Q ss_pred             ccceeeCCCCEECCCcEEC--CCcEECCCCEEcCCcEEeceEEccCCEECCCcE---ecCeEEcCCCEECCceEEeeeeE
Q psy9164         218 VGNVLVDPTATIGPGCRIG--PNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW---LEGCIIGWKCVVGQWVRMENITV  292 (380)
Q Consensus       218 ~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~ig~~~~ig~~~~i~~~~~  292 (380)
                      ..++.|+++++||+++.|+  .+++||++|+||++|.|.     .++.|+....   ...++||++|.||++++|     
T Consensus       162 ~~gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~-----~gvtIg~~~~~~~~r~~~IGd~v~IGaga~I-----  231 (287)
T 3mc4_A          162 IFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSIL-----HGVTLGGTGKSSGDRHPKIRQGVLIGAGAKI-----  231 (287)
T ss_dssp             HTCCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEE-----TTCEEEC-----CCCSCEECTTCEECTTCEE-----
T ss_pred             ccCeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEc-----CCCEEcCCcccCCCcCCEECCCCEECCCCEE-----
Confidence            3456677777777777776  566666666666666653     3333333211   134789999999999888     


Q ss_pred             ecceEECccceeCcceEEcc
Q psy9164         293 LGECIIGWKCVVGQWVRMEN  312 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~  312 (380)
                      .+++.||+++.||+++.+..
T Consensus       232 l~gv~IG~~a~IGagsvV~k  251 (287)
T 3mc4_A          232 LGNIQVGQCSKIAAGSVVLK  251 (287)
T ss_dssp             ESSCEECTTCEECTTCEECS
T ss_pred             CCCcEECCCCEECCCCEEcc
Confidence            45677777777777766554

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.31  E-value=7.7e-12  Score=103.25  Aligned_cols=35  Identities=14%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      +.+.||++|+||.++.|.+++.||++++||++++|
T Consensus       129 ~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV  163 (185)
T 2p2o_A          129 KPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVV  163 (185)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCeEEcCCeEECCCCEECCCCEECCCCEECCCCEE
Confidence            45666777777777666666666666555555555

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.31  E-value=5.2e-12  Score=111.55  Aligned_cols=96  Identities=19%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             ccceeeCCCCEECCCcEE--CCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecc
Q psy9164         218 VGNVLVDPTATIGPGCRI--GPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE  295 (380)
Q Consensus       218 ~~~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~  295 (380)
                      ..++.|+++++||+++.|  +.+++||++|+||++|.|     +.++.|+..+...+..       |.  .+  .....+
T Consensus       188 ~~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I-----~~gvtIg~~~~~~~~~-------g~--~i--~~~~~~  251 (310)
T 3f1x_A          188 ETGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKL-----YQGVTLGAKSFPLDNN-------GN--PI--KGIPRH  251 (310)
T ss_dssp             HHSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEE-----ETTCEEECC-------------------------CCS
T ss_pred             cCCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEE-----CCCCEECCCccccccc-------cc--cc--cCCCCC
Confidence            345556666666666666  445555555555444443     3333333322111000       00  00  011234


Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN  329 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~  329 (380)
                      ++||++|+||.++.|..+++||++++||++++|.
T Consensus       252 ~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          252 PILEDDVIVYSNATILGRVTIGKGATVGGNIWVT  285 (310)
T ss_dssp             CEECTTCEECTTCEEESSCEECTTCEECSSCEEC
T ss_pred             CEECCCcEEcCCCEECCCcEECCCCEECCCCEEC
Confidence            5667777777777777777777777777666663

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.28  E-value=7.4e-12  Score=104.84  Aligned_cols=104  Identities=16%  Similarity=0.098  Sum_probs=55.2

Q ss_pred             cccceeeCCCCEE--CCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCe-EEcCCCEECCceEEeeeeEe
Q psy9164         217 IVGNVLVDPTATI--GPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGC-IIGWKCVVGQWVRMENITVL  293 (380)
Q Consensus       217 i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~-~ig~~~~ig~~~~i~~~~~~  293 (380)
                      ++++++|.+++.+  |.++.||+++.|+++|.|.++.   .++||++|.|+++|.|... ...+......+..+     .
T Consensus        57 ~g~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~---~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~-----~  128 (199)
T 3ftt_A           57 TTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGG---QITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEK-----A  128 (199)
T ss_dssp             CCSSEEECSSEEESSSTTEEECSSEEECTTEEEECSS---CEEECSSEEECTTCEEECEECCSSHHHHHTTEEE-----E
T ss_pred             cCCCeEEeCCEEEEecCCcEECCCeEECCCeEEecCC---EEEECCCCEECCCCEEecCCCcCcccccccccee-----c
Confidence            4456666666555  4444444444444444443331   3477888777777666332 12221111222222     3


Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      +.+.||++|+||.++.|.+++.||++++||++++|
T Consensus       129 ~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV  163 (199)
T 3ftt_A          129 GPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVV  163 (199)
T ss_dssp             CCEEECSSEEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEE
Confidence            45666777777777666666666665555555555

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.24  E-value=3.8e-11  Score=99.56  Aligned_cols=121  Identities=12%  Similarity=0.075  Sum_probs=62.1

Q ss_pred             ccccceeeCCCCEE--CCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeE
Q psy9164         216 GIVGNVLVDPTATI--GPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITV  292 (380)
Q Consensus       216 ~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~  292 (380)
                      .+.++++|.+++.+  |.++.|++++.|+.+|.|.+.+   ...||++|.|++++.|.. ....+......++.+     
T Consensus        58 ~ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~---~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~-----  129 (188)
T 3srt_A           58 SVGKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVC---KIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEY-----  129 (188)
T ss_dssp             BCCSCEEECSCEEESSSTTEEECTTEEECTTEEEECSS---CEEECSSCEECTTCEEECEECCSSHHHHHTTEEE-----
T ss_pred             hcCCCCEEcCCEEEEeCCCeEECCcccccCceEEecCC---ceEECCeeEECCCcEEeeCCccCchhhccccceE-----
Confidence            45566666666655  3344444444444444443322   346888888887776632 111111111122222     


Q ss_pred             ecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      .+.+.||++|+||.++.|.++++||++++||++++|      .+. ++++.++.|.|++
T Consensus       130 ~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV------~~d-vp~~~v~~G~Pa~  181 (188)
T 3srt_A          130 GSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVV------TKD-IPPNTVAVGNPCR  181 (188)
T ss_dssp             ECCEEECSSCEECTTCEECTTCEECSSEEECTTCEE------CSC-BCSSEEEETTTTE
T ss_pred             CCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEE------Ccc-cCCCCEEEccCCE
Confidence            345566777777776666555555555555555554      433 4555555555443

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.20  E-value=9e-11  Score=101.61  Aligned_cols=50  Identities=8%  Similarity=0.009  Sum_probs=30.9

Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +++||++|+||.++.|..+++||++++||++++|.      + .+++++++.|.|.+
T Consensus       189 ~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~------~-dVp~~~~v~G~PAr  238 (267)
T 1ssq_A          189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVL------N-PVPEYATAAGVPAR  238 (267)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEEC------S-CBCTTCEEETTTTE
T ss_pred             CeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc------c-CCCCCCEEEecCcE
Confidence            45667777777776666666666666666666653      2 24555555555554

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.19  E-value=8.9e-11  Score=102.49  Aligned_cols=50  Identities=10%  Similarity=0.030  Sum_probs=29.7

Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      +++||++++||.++.|..+++||++++||++++|.      + .+++++++.|.|.+
T Consensus       209 ~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~------~-dVp~~s~v~G~PAr  258 (289)
T 1t3d_A          209 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL------Q-PVPPHTTAAGVPAR  258 (289)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEEC------S-CBCTTCEEETTTTE
T ss_pred             CeEECCCeEECCCCEEecCcEECCCCEECCCCEEc------c-CCCCCCEEEecCCE
Confidence            45566667777776666666666666666666553      2 24555555555544

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.18  E-value=3.5e-11  Score=101.82  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                      +++.||++|+||.++.|.+++.||+++.||+++.|
T Consensus       110 g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV  144 (212)
T 3eev_A          110 GDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVV  144 (212)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            45666777777766665555555555555555554

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.16  E-value=4e-11  Score=101.29  Aligned_cols=85  Identities=16%  Similarity=0.066  Sum_probs=43.5

Q ss_pred             CCEEcCCcEEe-ceEEccCCEECCCcEec-----CeEEc---CCCEECCce----EEe-eeeEecceEECccceeCcceE
Q psy9164         244 GVVIEGGVCIK-RSTILRDAIVKSHSWLE-----GCIIG---WKCVVGQWV----RME-NITVLGECIIGWKCVVGQWVR  309 (380)
Q Consensus       244 ~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-----~~~ig---~~~~ig~~~----~i~-~~~~~~~~~ig~~~~ig~~~~  309 (380)
                      ++.+...+.++ ++.||++|.|++++.|.     +..++   +.+.++.++    .+. .....++++||++++||.++.
T Consensus        53 ~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~a~  132 (219)
T 4e8l_A           53 DQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVT  132 (219)
T ss_dssp             GGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTSCCCCCEEECSSCEECTTCE
T ss_pred             ceEEeecceeCCCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccccccCCcEECCCeEECCCCE
Confidence            34555544443 46677777777777662     11111   001112211    111 112235677777777777766


Q ss_pred             EccceEECCCeEECcceEE
Q psy9164         310 MENITVLGEDVIVQDELYV  328 (380)
Q Consensus       310 i~~~~~ig~~~~ig~~~~i  328 (380)
                      |.+++.||+++.||+++.|
T Consensus       133 I~~gv~IG~~~~IgagsvV  151 (219)
T 4e8l_A          133 IMPGVKIGDGAIIAAEAVV  151 (219)
T ss_dssp             ECTTCEECTTCEECTTCEE
T ss_pred             EcCCCEECCCCEECCCCEE
Confidence            6666666666555555555

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.15  E-value=8.7e-11  Score=110.30  Aligned_cols=86  Identities=14%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             CcEECCCCEEcC-----CcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEcc
Q psy9164         238 NVTIGPGVVIEG-----GVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN  312 (380)
Q Consensus       238 ~~~ig~~~~i~~-----~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~  312 (380)
                      .+.+.+.+.|++     ++.+.++.||++|.| .++.|.+++||++|.||++|.|      .+++|      ++++.|+.
T Consensus       302 ~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i------~~~~i------~~~~~i~~  368 (420)
T 3brk_X          302 YAEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRL------ENAVV------LPSVKIGR  368 (420)
T ss_dssp             CCCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESCEECTTCEECTTCEE------EEEEE------CTTCEECT
T ss_pred             ccccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEE------cceEE------cCCCEECC
Confidence            344444444444     777778888888888 7888888888888888888888      23333      44444444


Q ss_pred             ceEECCCeEECcceEEcCCeeecce
Q psy9164         313 ITVLGEDVIVQDELYVNGGQVLPHK  337 (380)
Q Consensus       313 ~~~ig~~~~ig~~~~i~~~~v~~~~  337 (380)
                      ++.|.+ +.||+++.|++|+++...
T Consensus       369 ~~~i~~-~~ig~~~~i~~~~~i~~~  392 (420)
T 3brk_X          369 HAQLSN-VVIDHGVVIPEGLIVGED  392 (420)
T ss_dssp             TCEEEE-EEECTTCEECTTCEESSC
T ss_pred             CCEEec-eEECCCCEECCCCEEeCC
Confidence            477764 777777777777665543

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.13  E-value=2.7e-10  Score=97.68  Aligned_cols=176  Identities=13%  Similarity=0.146  Sum_probs=118.1

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecC----CCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN----EPLGTAGPLALAKDILNKSQEPFFVL   75 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~----~~~gt~~al~~a~~~i~~~~~~~lv~   75 (380)
                      ||+|+++.|.+++ +++|+|++++  +++.+++.+    ++.++ +....    ...|++++++.+.+.+....+.++++
T Consensus        31 ll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~-~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~  103 (228)
T 1ezi_A           31 LLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN----FGVEV-VLRPAELASDTASSISGVIHALETIGSNSGTVTLL  103 (228)
T ss_dssp             HHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH----TTCEE-EECCC------CHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH----cCCEE-EeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEE
Confidence            6899999999998 7999999863  566666643    35555 22222    44567888999998883224568999


Q ss_pred             eCCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCC-CCceeEEEECCCCceeEEEe-C---CC--CC-CCCeEEEEEEEe
Q psy9164          76 NSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEE-PSKYGVVLYNEHGCIESFIE-K---PQ--EF-VSNKINAGMYIF  145 (380)
Q Consensus        76 ~gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~-~~~~g~v~~d~~~~v~~~~e-k---~~--~~-~~~~~~~giyi~  145 (380)
                      +||.  +...+++++++.|++.++++++...+..+ |..+.  .++++|++..|.+ +   +.  .. .....+.|+|++
T Consensus       104 ~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~  181 (228)
T 1ezi_A          104 QPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTL--LQINNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYIN  181 (228)
T ss_dssp             CTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCE--EECC--CEEESSCHHHHTCCGGGSCCEEEEEEEEEEE
T ss_pred             cCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcceee--EEcCCCcEeeccccccccCCcccCchhheeeeEEEEE
Confidence            9997  44567899999887777777777777766 44433  3377788888876 2   11  11 123467899999


Q ss_pred             CHhHHhhccCCCCCcccchhhhhhcCCcEEEEEec-cEEEecCChhhHHHHHHH
Q psy9164         146 NPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK-GFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       146 ~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~a~~~  198 (380)
                      ++..+.....        +     ...++..+... ..|.++++|+||..+...
T Consensus       182 ~~~~l~~~~~--------~-----~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~  222 (228)
T 1ezi_A          182 DTASLIANNC--------F-----FIAPTKLYIMSHQDSIDIDTELDLQQAENI  222 (228)
T ss_dssp             EHHHHHHHTS--------S-----CCSSCEEEECCTGGGCCCCSHHHHHHHHHH
T ss_pred             eHHHHhhCCc--------c-----cCCceEEEEeCcccccCCCCHHHHHHHHHH
Confidence            9987644210        0     02355556655 579999999999877543

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.11  E-value=3.4e-10  Score=93.05  Aligned_cols=117  Identities=13%  Similarity=0.094  Sum_probs=58.9

Q ss_pred             ceeeCCCCE--ECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEE-cCCCEECCceEEeeeeEecce
Q psy9164         220 NVLVDPTAT--IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII-GWKCVVGQWVRMENITVLGEC  296 (380)
Q Consensus       220 ~~~i~~~~~--i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i-g~~~~ig~~~~i~~~~~~~~~  296 (380)
                      +++|+++..  ++.+++||+++.|+++|.|.+.   .++.||++|.|++++.|....- .+...-..+..     ..+.+
T Consensus        58 ~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~---~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~-----~~~~v  129 (182)
T 1ocx_A           58 EAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDV---CPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAE-----LGKPV  129 (182)
T ss_dssp             SEEECSCEEESSSTTEEECSSEEECSSEEEECS---SCEEECTTCEECTTCEEECEECCSSHHHHTTTCB-----EECCE
T ss_pred             CEEEeCCEEEEeCCCEEECCCcEEeCCeEEEec---cceEEcCCcEEeCCcEEEeCCCccChhhcccCcc-----ccCCe
Confidence            566666633  3444444444444444444322   2567888888888777743210 00000001111     12455


Q ss_pred             EECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      .||++++||.++.|.+++.||++++||++++|      .+. |++++++.|.|++
T Consensus       130 ~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV------~~d-ip~~~vv~G~Pa~  177 (182)
T 1ocx_A          130 TIGNNVWIGGRAVINPGVTIGDNVVVASGAVV------TKD-VPDNVVVGGNPAR  177 (182)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEE------CSC-BCSSEEEETTTTE
T ss_pred             EEeCCeEECCCCEECCCcEECCCCEECCCCEE------CCc-CCCCcEEEccccE
Confidence            66777777776665555555555555554444      433 4555555554443

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.08  E-value=1.8e-10  Score=103.96  Aligned_cols=19  Identities=11%  Similarity=-0.022  Sum_probs=12.2

Q ss_pred             eccEEEecCC--hhhHHHHHH
Q psy9164         179 LKGFWMDVGQ--PRDFLKGMC  197 (380)
Q Consensus       179 ~~~~~~~i~~--~~~~~~a~~  197 (380)
                      ...+|.+.+.  |..|.....
T Consensus       168 ~~~~Wt~~G~~~~~~f~~~~~  188 (387)
T 2rij_A          168 SNVAWSDDKPIELEYLRANEM  188 (387)
T ss_dssp             CCEEEETTEEECHHHHHHHHH
T ss_pred             ceeeeccCcccCHHHHHHHHH
Confidence            4567998887  455655433

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.06  E-value=2e-09  Score=101.39  Aligned_cols=149  Identities=17%  Similarity=0.197  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHc----CCC-EEEEEcc-CChHHHHHHHccccccCCcEEEEeecC------------------------C
Q psy9164           1 MLLHQIEALVEA----GVR-EVILAVS-YRAEQMEDELTVETKKLGISLVFSHEN------------------------E   50 (380)
Q Consensus         1 li~~~l~~l~~~----gi~-~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~------------------------~   50 (380)
                      ||+|+++++...    |+. .++++++ +..+++++++.+ ...+++++.+..|.                        .
T Consensus       123 ~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~-~~~fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~  201 (488)
T 2i5k_A          123 FLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKK-YSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWY  201 (488)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGG-GCSSSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEE
T ss_pred             HHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHh-ccccCceEEEEEeCccceEccccceeeccCCCCCceeee
Confidence            588999999887    633 3556566 788999999987 45667888877665                        6


Q ss_pred             CCCCchHHHHh-----HHhh-CCCCCcEEEEeCCcccC-CChHHHHHHHHhcCCcEEEEEEEcCCCCc-eeEEEECCCCc
Q psy9164          51 PLGTAGPLALA-----KDIL-NKSQEPFFVLNSDIICD-FPFKDLVSFHKNHGKEGTIVVTQVEEPSK-YGVVLYNEHGC  122 (380)
Q Consensus        51 ~~gt~~al~~a-----~~~i-~~~~~~~lv~~gD~i~~-~~l~~~l~~h~~~~~~~tl~~~~~~~~~~-~g~v~~d~~~~  122 (380)
                      +.||++++...     .+.+ ....+.++|++||.+.. .|+. ++..|.++++++++.+.+..++.. ||++..+ +|+
T Consensus       202 P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~-dG~  279 (488)
T 2i5k_A          202 PPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-ILNHMIETGAEYIMELTDKTRADVKGGTLISY-DGQ  279 (488)
T ss_dssp             CCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-HHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE-TTE
T ss_pred             cCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-HHHHHHhcCCcEEEEEEEecCCCCceeEEEEE-CCc
Confidence            88999998733     2433 22367899999999776 5675 669999999999999998877764 9988774 565


Q ss_pred             eeEEEe---CCCC--------CCCCeEEEEEEEeCHhHHhhc
Q psy9164         123 IESFIE---KPQE--------FVSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus       123 v~~~~e---k~~~--------~~~~~~~~giyi~~~~~l~~l  153 (380)
                       ..++|   .|.+        ......++|+|+|+.+.++.+
T Consensus       280 -~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~  320 (488)
T 2i5k_A          280 -VRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRL  320 (488)
T ss_dssp             -EEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHH
T ss_pred             -EEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHH
Confidence             34444   3332        124688999999999988665

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.06  E-value=5.8e-11  Score=102.16  Aligned_cols=162  Identities=13%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|..++. +|+|++. . +++++++       ++++     +...|++++++.+.+.+   ++.|++++||. 
T Consensus        34 ll~~~l~~l~~~~~-~ivvv~~-~-~~i~~~~-------~~~~-----~~~~g~~~~i~~a~~~~---~~~~lv~~~D~P   95 (232)
T 2dpw_A           34 MVEWVLEALYAAGL-SPVYVGE-N-PGLVPAP-------ALTL-----PDRGGLLENLEQALEHV---EGRVLVATGDIP   95 (232)
T ss_dssp             THHHHHHHHHHTTC-EEEEESC-C-SSCSSCC-------SEEE-----CCCSSHHHHHHHHHHTC---CSEEEEEETTCT
T ss_pred             HHHHHHHHHHhcCC-EEEEEeC-h-HHHhhhc-------CeEe-----cCCCCHHHHHHHHHHHc---CCCEEEEeCCcc
Confidence            79999999999999 8888754 3 4433332       3333     56789999999999988   47899999999 


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCC-CceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC--
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-SKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI--  155 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~--  155 (380)
                       +...+++++++ | +.++++++...+.+++ ..|+.+    ..++..+.|||      ..++|+|+|+++.+..+..  
T Consensus        96 ~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~ek~------~~~~g~~~~~~~~l~~~~~~~  163 (232)
T 2dpw_A           96 HLTEEAVRFVLD-K-APEAALVYPIVPKEAVEARFPRT----KRTYARLREGT------FTGGNLLLLDKSLFRKALPLA  163 (232)
T ss_dssp             TCCHHHHHHHHH-H-CCSCSEEEEEEEHHHHHHHCTTC----CCCCEEETTEE------EEECSEEEEEHHHHTTTHHHH
T ss_pred             cCCHHHHHHHHh-c-CCCCCEEEEEeeccchhhhCCCc----ceeEEEEecCc------eeeeeEEEEcHHHHHHHHHHH
Confidence             56667899998 7 5556777766654322 223321    23477777765      3889999999998866521  


Q ss_pred             -----CC---------------------CCcccchhhhhhc--CCcEEEEEe--ccEEEecCChhhH
Q psy9164         156 -----KP---------------------TSIEKEIFPLMSK--EKQLYAMEL--KGFWMDVGQPRDF  192 (380)
Q Consensus       156 -----~~---------------------~~~~~~il~~l~~--~~~i~~~~~--~~~~~~i~~~~~~  192 (380)
                           ..                     .....++++.+.+  ..++..+..  .+.|.++++|++|
T Consensus       164 ~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl  230 (232)
T 2dpw_A          164 RRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDL  230 (232)
T ss_dssp             HHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHH
T ss_pred             HHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhc
Confidence                 00                     0111234444432  246777776  4679999999987

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.04  E-value=1.4e-10  Score=97.48  Aligned_cols=50  Identities=24%  Similarity=0.330  Sum_probs=26.3

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      ++++||++++||.++.+.+++.||+++.      |++++++... +++++++.|.|+
T Consensus       112 ~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~------Igags~V~~~-v~~~~i~~G~Pa  161 (209)
T 1mr7_A          112 GDTIIGNDVWIGKDVVIMPGVKIGDGAI------VAANSVVVKD-IAPYMLAGGNPA  161 (209)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCE------ECTTCEECSC-BCTTEEEEETTE
T ss_pred             CCcEECCCCEEcCCCEEcCCCEECCCCE------EcCCCEEcCC-CCCCeEEEeeCC
Confidence            4566666666666655555555555555      5555544433 344444444444

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.02  E-value=1.6e-09  Score=92.41  Aligned_cols=180  Identities=14%  Similarity=0.136  Sum_probs=116.9

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      ||+|+++.|.+++ +++|+|++++.. +.+.+++..    .+  +.+..+  ..+.+++++.+...+. ..+.++++.||
T Consensus        32 li~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~----~~--v~~~~~--~~~~~~~i~~al~~~~-~~~~vlv~~~D  102 (223)
T 2xwl_A           32 LLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGG----ED--SVIVSG--GVDRTESVALALEAAG-DAEFVLVHDAA  102 (223)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCB----TT--EEEEEC--CSSHHHHHHHHHTTCT-TCSEEEECCTT
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhcc----CC--eEEEcC--CCCHHHHHHHHHHhcC-CCCEEEEEcCC
Confidence            6899999999998 999999999875 446666531    12  333333  2356788888888772 24567888999


Q ss_pred             c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC
Q psy9164          79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK  156 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~  156 (380)
                      .  +...+++++++.|. .+.+.++.+.+..++..+    .+++|++..+.|++.-    ......++|++..+..+...
T Consensus       103 ~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d~~~~----~~~~g~~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~  173 (223)
T 2xwl_A          103 RALTPPALIARVVAALK-EGHSAVVPGLAPADTIKA----VDANGAVLGTPERAGL----RAVQTPQGFHADVLRRAYAR  173 (223)
T ss_dssp             CTTCCHHHHHHHHHHHH-HTCSEEEEEECCSSCEEE----ECTTSBEEECCCGGGE----EEECSCEEEEHHHHHHHHTT
T ss_pred             cccCCHHHHHHHHHHHh-hcCCeEEEEEecccceEE----EcCCCcEEeecChHHh----eeeeCCcccCHHHHHHHHHH
Confidence            7  34456899999883 233556666666555333    3677888888776421    11123578888776554322


Q ss_pred             C-CCcccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         157 P-TSIEKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       157 ~-~~~~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                      . .....+....+... .++..+..++.|.+++||++|..+...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~  217 (223)
T 2xwl_A          174 ATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAV  217 (223)
T ss_dssp             CCSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHH
T ss_pred             hhCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHH
Confidence            1 11122334444333 367777778889999999999877543

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=98.98  E-value=1.9e-09  Score=92.43  Aligned_cols=174  Identities=9%  Similarity=0.106  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecC---CCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN---EPLGTAGPLALAKDILNKSQEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~---~~~gt~~al~~a~~~i~~~~~~~lv~~   76 (380)
                      ||+|+++.+.+++ +++|+|++.  .+++.+++.+    +++++....++   ...+..+++..+...+. ..+.+++++
T Consensus        30 li~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~----~g~~~~~~~~~~~~~~~~~~~~v~~al~~~~-~~d~vlv~~  102 (229)
T 1qwj_A           30 LIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ----FGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-EVDIVGNIQ  102 (229)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH----TTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-TCSEEEEEC
T ss_pred             HHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH----cCCEEEeChhhhcCCCCcHHHHHHHHHHhcC-CCCEEEEec
Confidence            6899999999999 699999884  5677777654    36666333221   22233367888877772 246699999


Q ss_pred             CCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEE-----eC----CCC--CCCCeEEEEEE
Q psy9164          77 SDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFI-----EK----PQE--FVSNKINAGMY  143 (380)
Q Consensus        77 gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~-----ek----~~~--~~~~~~~~giy  143 (380)
                      ||.  +...++.++++.|++.+++.++.+.+..+|..++.  .+  + +..|.     ++    +.+  ......++|+|
T Consensus       103 ~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~giY  177 (229)
T 1qwj_A          103 ATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEI--QK--G-VREVTEPLNLNPAKRPRRQDWDGELYENGSFY  177 (229)
T ss_dssp             TTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCC--CS--S-TTCCCCBSSSBTTBCCCTTTSCCEEEEEEEEE
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhc--cc--c-ccccccccccccccccCCCCCCceEEEeeEEE
Confidence            997  44567999999998877765555545555555432  22  2 11122     11    111  12346799999


Q ss_pred             EeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEec-cEEEecCChhhHHHHHHHHH
Q psy9164         144 IFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELK-GFWMDVGQPRDFLKGMCLYL  200 (380)
Q Consensus       144 i~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~a~~~~l  200 (380)
                      +|+++.|  +            ..+.....+.....+ ++|.++++|++|..+...+.
T Consensus       178 ~~~~~~l--~------------~~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~  221 (229)
T 1qwj_A          178 FAKRHLI--E------------MGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVL  221 (229)
T ss_dssp             EEEHHHH--H------------TTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHH
T ss_pred             EEEHHHh--c------------cccccCCeEEEEECCcccccCCCCHHHHHHHHHHHH
Confidence            9999987  1            111112234321444 68999999999988865543

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=98.94  E-value=1.5e-09  Score=93.42  Aligned_cols=184  Identities=10%  Similarity=0.086  Sum_probs=117.2

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC---C--CCCcEE
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN---K--SQEPFF   73 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~---~--~~~~~l   73 (380)
                      ||+|+|+.|.++ ++++|+|++++.. +.+++++.+..-.......+  .....|..++++.+...+.   .  ..+.++
T Consensus        33 li~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~vl  110 (236)
T 2vsh_A           33 ILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIII--TKGGADRNTSIKNIIEAIDAYRPLTPEDIVV  110 (236)
T ss_dssp             HHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEE--EECCSSHHHHHHHHHHHHHHHSCCCTTCEEE
T ss_pred             HHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEE--ECCCCchHHHHHHHHHHHHhhccCCCCCEEE
Confidence            689999999998 5999999999876 67777765421001011222  1223567788888888772   1  135578


Q ss_pred             EEeCCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCC-ceeEEEeCCCCCCCCeEE-EEEEEeCHhH
Q psy9164          74 VLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG-CIESFIEKPQEFVSNKIN-AGMYIFNPSV  149 (380)
Q Consensus        74 v~~gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~-~v~~~~ek~~~~~~~~~~-~giyi~~~~~  149 (380)
                      +++||.  +...+++++++.|++.++  .+++.+..++.     ..+++| ++..+.+++.     +.. ...|+|+++.
T Consensus       111 v~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-----~~~~~~p~~f~~~~  178 (236)
T 2vsh_A          111 THDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEAVDTI-----VESTNGQFITDIPNRAH-----LYQGQTPQTFRCKD  178 (236)
T ss_dssp             EEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEECCSCE-----EECSSSSBCCBCCCGGG-----EEEEEEEEEEEHHH
T ss_pred             EecCCcccCCHHHHHHHHHHHHhcCc--EEEEEeccccE-----EEeCCCCeeeeecChHH-----heeecCCcEecHHH
Confidence            889998  455679999999987754  34445555542     224567 7777776532     222 2478999987


Q ss_pred             Hhh-ccCCCC-Cc--ccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         150 LDR-IEIKPT-SI--EKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       150 l~~-l~~~~~-~~--~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                      +.. +..... .+  ..+.++.+... .++..+..+++|.++++|++|..+...
T Consensus       179 l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~  232 (236)
T 2vsh_A          179 FMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSM  232 (236)
T ss_dssp             HHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHH
Confidence            754 332110 00  11223444444 368888878899999999999877543

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=98.91  E-value=1.2e-08  Score=96.50  Aligned_cols=151  Identities=18%  Similarity=0.233  Sum_probs=113.2

Q ss_pred             CHHHHHHHHHH--------cC----CCEEEEEccCChHHHHHHHccccccCCc---EEEEeec-----------------
Q psy9164           1 MLLHQIEALVE--------AG----VREVILAVSYRAEQMEDELTVETKKLGI---SLVFSHE-----------------   48 (380)
Q Consensus         1 li~~~l~~l~~--------~g----i~~i~vv~~~~~~~i~~~l~~~~~~~~~---~i~~~~~-----------------   48 (380)
                      +|++++++|.+        .|    +..+++...+..+.+++|+++ ...+++   ++.+..|                 
T Consensus       135 ~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~-~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~  213 (505)
T 1jv1_A          135 LFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK-HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEK  213 (505)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH-TGGGGSCGGGEEEEECCEEECEETTSCBCEEET
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHHh-hhhcCCCcCceEEEEecceEEEcCCCcccccCC
Confidence            47888888776        37    777777777889999999987 345566   3665543                 


Q ss_pred             ----CCCCCCchHHHHhHH------hhCCCCCcEEEEeCCcc-cCCChHHHHHHHHhcCCcEEEEEEE-cCCCCceeEEE
Q psy9164          49 ----NEPLGTAGPLALAKD------ILNKSQEPFFVLNSDII-CDFPFKDLVSFHKNHGKEGTIVVTQ-VEEPSKYGVVL  116 (380)
Q Consensus        49 ----~~~~gt~~al~~a~~------~i~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~tl~~~~-~~~~~~~g~v~  116 (380)
                          ..+.||++.+..+..      ++....+.|+|+++|.+ ...+...++.+|.++++++++.+.+ ..++.++|.+.
T Consensus       214 ~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~  293 (505)
T 1jv1_A          214 NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVC  293 (505)
T ss_dssp             TEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEE
T ss_pred             cccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEE
Confidence                368899999876643      22222578999999995 8788889999999999999998886 67788999887


Q ss_pred             ECCCCce--eEEEeCCCC----------CCCCeEEEEEEEeCHhHHhhc
Q psy9164         117 YNEHGCI--ESFIEKPQE----------FVSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus       117 ~d~~~~v--~~~~ek~~~----------~~~~~~~~giyi~~~~~l~~l  153 (380)
                      .+ +|++  +++.|+|..          ...++.++++|+|+.++++.+
T Consensus       294 ~~-dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~L~~i  341 (505)
T 1jv1_A          294 RV-DGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDV  341 (505)
T ss_dssp             EE-TTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHHHHH
T ss_pred             EE-CCeEEEEEEeeCCHHHhhhcccccccccceeeEEEEEecHHHHHHH
Confidence            74 4543  455555541          124789999999999988766

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.88  E-value=4e-09  Score=88.56  Aligned_cols=50  Identities=12%  Similarity=0.211  Sum_probs=26.1

Q ss_pred             cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164         294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      +.+.||++|+||.++.|.+++.||+++      +|++++++.+. +++++++.|.|+
T Consensus       109 ~~v~IG~~v~IG~~a~I~~gv~Ig~~~------~IgagsvV~~~-vp~~~~~~G~Pa  158 (212)
T 1xat_A          109 GDTLIGHEVWIGTEAMFMPGVRVGHGA------IIGSRALVTGD-VEPYAIVGGNPA  158 (212)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTC------EECTTCEECSC-BCTTEEEETTTT
T ss_pred             CCeEECCCCEECCCCEEeCCCEECCCC------EECCCCEEccc-CCCCcEEEccCC
Confidence            345666666666665555555555554      45555544443 444444444443

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=98.80  E-value=2.1e-08  Score=85.83  Aligned_cols=182  Identities=10%  Similarity=0.130  Sum_probs=114.1

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.++ ++++|+|++++..+++.+++..   .++..+.+...  ..|..++++.+.+.+....+.++++.||.
T Consensus        34 li~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~---~~~~~v~~~~~--~~~~~~sv~~al~~~~~~~~~vl~~d~d~  108 (228)
T 2yc3_A           34 IALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE---SIDVDLSFAIP--GKERQDSVYSGLQEIDVNSELVCIHDSAR  108 (228)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT---TSSSEEEEECC--CSSHHHHHHHHHTTSCTTCSEEEEEETTC
T ss_pred             HHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH---hCCCcEEEECC--CCCHHHHHHHHHHhhccCCCEEEEecCCC
Confidence            689999999998 8999999999887777766643   23445555432  35778899999988842234578889986


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHh-hcc--
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RIE--  154 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~-~l~--  154 (380)
                        +...+++++++.|++.++  +++..+..+.    ....++++.+..+.+++   ......+ .|.|+++.+. .+.  
T Consensus       109 P~~~~~~i~~l~~~~~~~~~--~i~~~~~~~~----~~~~~~~~~v~~~~~~~---~~~~~~~-~~~f~~~~l~~~~~~~  178 (228)
T 2yc3_A          109 PLVNTEDVEKVLKDGSAVGA--AVLGVPAKAT----IKEVNSDSLVVKTLDRK---TLWEMQT-PQVIKPELLKKGFELV  178 (228)
T ss_dssp             TTCCHHHHHHHHHHHHHHSE--EEEEEECCSC----CCCBCTTSCBCCCCSCC---CCEEEEE-EEEECHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHhcCc--eEEEEeccce----EEEEcCCCceEEecCcc---ceEEEeC-CcEEEHHHHHHHHHHH
Confidence              445568999999887653  4444444332    11224445554433321   1122334 8999987553 332  


Q ss_pred             -CCCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         155 -IKPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       155 -~~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                       ..... ..+.++.+.+.+ ++........|.++++|+|+..+...
T Consensus       179 ~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~  223 (228)
T 2yc3_A          179 KSEGLE-VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERI  223 (228)
T ss_dssp             HHHTCC-CCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred             HhcCCC-cccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHH
Confidence             11111 223444554443 55544545679999999999877543

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=98.73  E-value=2.1e-07  Score=77.67  Aligned_cols=158  Identities=13%  Similarity=0.191  Sum_probs=105.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+++.+..+++++|+|++++..+++.+++.+    .++++... +....|++++++.+.+.+....+.+++++||..
T Consensus        33 li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P  107 (199)
T 2waw_A           33 LLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL----DGLDIVLV-DDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQP  107 (199)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC----TTSEEEEC-CCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCT
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc----CCCEEEEC-CCcccCHHHHHHHHHHhhhccCCeEEEEeCCcc
Confidence            6899999999999999999999988888888754    35666443 345579999999999888322567999999993


Q ss_pred             --cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164          81 --CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT  158 (380)
Q Consensus        81 --~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~  158 (380)
                        ...+++++++.  +.++.+++...               +++.                ..-++|+++.+..+.....
T Consensus       108 ~~~~~~i~~l~~~--~~~~~~~~~~~---------------~g~~----------------~~P~~~~~~~l~~~~~~~~  154 (199)
T 2waw_A          108 GITASAVASLIAG--GRGATIAVCEY---------------ANGI----------------GHPFWVSRGVFGDLAELHG  154 (199)
T ss_dssp             TCCHHHHHHHHHH--HTTCSEEEEEE---------------TTEE----------------EEEEEEEGGGHHHHHTCSS
T ss_pred             cCCHHHHHHHHhh--cCCCCEEEEec---------------CCcc----------------cCCEEEcHHHHHHHHhcCC
Confidence              45668888887  34444332111               1110                1124788888876643211


Q ss_pred             CcccchhhhhhcC-CcEEEEEe-ccEEEecCChhhHHHHHHH
Q psy9164         159 SIEKEIFPLMSKE-KQLYAMEL-KGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       159 ~~~~~il~~l~~~-~~i~~~~~-~~~~~~i~~~~~~~~a~~~  198 (380)
                      +  ......+.+. .++..+.. .+.|.+++||++|..+...
T Consensus       155 ~--~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~  194 (199)
T 2waw_A          155 D--KGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLAS  194 (199)
T ss_dssp             T--TCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHH
T ss_pred             C--HHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHH
Confidence            1  1122223222 35666666 4589999999999877543

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=98.71  E-value=1.6e-07  Score=78.26  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+.++|+++|+|++++..+++.+++.+. ..+...+.+. +....|++++++.+.+.+   .+.++++.||. 
T Consensus        29 li~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~-~~~~~g~~~si~~al~~~---~~~vlv~~~D~P  103 (196)
T 3rsb_A           29 LIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSA-YKDYKNIVVI-DTSGKGYIEDLNECIGYF---SEPFLVVSSDLI  103 (196)
T ss_dssp             HHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHH-TTTTTEEEE---------CCCCCTTTTTC---SSCEEEEETTEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhh-ccCCCCEEEE-ECCCCCcHHHHHHHHHhC---CCCEEEEeCCcc
Confidence            68999999999999999999999889999998762 1222234433 345678889999888888   78899999999 


Q ss_pred             -ccCCChHHHHHHHHh-----cCCcEEEEEEEcC
Q psy9164          80 -ICDFPFKDLVSFHKN-----HGKEGTIVVTQVE  107 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~-----~~~~~tl~~~~~~  107 (380)
                       +....++++++.|++     .+.+..+...+..
T Consensus       104 ~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~  137 (196)
T 3rsb_A          104 NLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKE  137 (196)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETT
T ss_pred             cCCHHHHHHHHHHHHhhhcccCCCceEEEEEEcc
Confidence             567779999999987     5555555555443

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=98.70  E-value=2e-07  Score=79.84  Aligned_cols=180  Identities=14%  Similarity=0.107  Sum_probs=109.5

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-----CCCcEEE
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-----SQEPFFV   74 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-----~~~~~lv   74 (380)
                      ||+|+++.|.+++ +++|+|++++..+.+.+ +.+.. .  ..+.+.  .+..|++++++.+...+..     ..+.+++
T Consensus        36 li~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~-~--~~i~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv  109 (231)
T 1vgw_A           36 VLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAF-P--QVRVWK--NGGQTRAETVRNGVAKLLETGLAAETDNILV  109 (231)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHC-T--TSEEEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEE
T ss_pred             HHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcC-C--CceEEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEE
Confidence            6899999999986 99999999987767766 54311 1  123333  3466889999988877621     2467899


Q ss_pred             EeCCc-c-cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCe-EEEEEEEeCHhHHh
Q psy9164          75 LNSDI-I-CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNK-INAGMYIFNPSVLD  151 (380)
Q Consensus        75 ~~gD~-i-~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~-~~~giyi~~~~~l~  151 (380)
                      ++||. + ....++++++.|++.+.. .+++.+..+...+     .++|++....++     ..+ .-...|+|+++.+.
T Consensus       110 ~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~~~~~~~~~~~-----~~~g~i~~~~~~-----~~~~~~~~p~~f~~~~l~  178 (231)
T 1vgw_A          110 HDAARCCLPSEALARLIEQAGNAAEG-GILAVPVADTLKR-----AESGQISATVDR-----SGLWQAQTPQLFQAGLLH  178 (231)
T ss_dssp             CCTTCTTCCHHHHHHHHHHHTTCTTC-EEEEEECCSCEEE-----ESSSBEEEEECC-----TTEEEEEEEEEEEHHHHH
T ss_pred             EcCCcccCCHHHHHHHHHHHhhcCCe-EEEEeecccceEE-----eCCCceEecCCh-----HHheeeeCCcEecHHHHH
Confidence            99997 3 345589999988765422 3444444443221     234555443322     122 12348999998775


Q ss_pred             hc-cCCCCCcccchhhhhhc-CCcEEEEEeccEEEecCChhhHHHHHH
Q psy9164         152 RI-EIKPTSIEKEIFPLMSK-EKQLYAMELKGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       152 ~l-~~~~~~~~~~il~~l~~-~~~i~~~~~~~~~~~i~~~~~~~~a~~  197 (380)
                      .+ ......-..+....+.. ..++..+..++.|.+++||+||..+..
T Consensus       179 ~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~  226 (231)
T 1vgw_A          179 RALAAENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL  226 (231)
T ss_dssp             HHHHC----CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred             HHHHHHhhcCCCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHH
Confidence            43 22110001122222222 235666666778999999999987743

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=98.68  E-value=5.7e-08  Score=84.09  Aligned_cols=189  Identities=10%  Similarity=0.087  Sum_probs=118.5

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChH-HHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-----CCCcEE
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAE-QMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-----SQEPFF   73 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-----~~~~~l   73 (380)
                      ||+|+|+.+.+++ +++|+|++++... .+++.+.+..  ....+.+..  ...+..++++.+.+.+.+     ..+.+|
T Consensus        34 ll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~sv~~al~~l~~~~~~~~~~~vl  109 (246)
T 3f1c_A           34 IIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYI--SDDRIVVIE--GGEDRNETIMNGIRFVEKTYGLTDDDIIV  109 (246)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHC--CCTTEEEEE--CCSSHHHHHHHHHHHHHHHTCCCTTCEEE
T ss_pred             HHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhC--CCCCEEEEC--CCCchHHHHHHHHHHHhhhhcCCCCCEEE
Confidence            6899999999998 9999999987553 3455554421  111233332  223556788888887742     135689


Q ss_pred             EEeCCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHh
Q psy9164          74 VLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLD  151 (380)
Q Consensus        74 v~~gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~  151 (380)
                      ++.||.  +....+.++++.|++.++.++  ..+..+    ..+..++++.+..+.+++..    +..-..++|+.+.+.
T Consensus       110 v~~~d~Pli~~~~i~~li~~~~~~~a~i~--~~~~~d----~i~~~~~~~~v~~~~~r~~l----~~~qtpq~f~~~~L~  179 (246)
T 3f1c_A          110 THDAVRPFLTHRIIEENIDAALETGAVDT--VIEALD----TIVESSNHEVITDIPVRDHM----YQGQTPQSFNMKKVF  179 (246)
T ss_dssp             EEETTCTTCCHHHHHHHHHHHHHTSEEEE--EEECSS----CEEECSSSSBCCBCCCGGGE----EEEEEEEEEEHHHHH
T ss_pred             EecCcccCCCHHHHHHHHHHHHhcCCEEE--EEeccc----eEEEecCCCeEEEecChHHh----hhhcCCceeEHHHHH
Confidence            999997  666779999999988765433  444443    23343455566555555331    122245788876653


Q ss_pred             h-ccCCCC---CcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHHHhhh
Q psy9164         152 R-IEIKPT---SIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLNSL  203 (380)
Q Consensus       152 ~-l~~~~~---~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~  203 (380)
                      . +..-..   ....|....+.+.+ ++..++.+..|.++++|+++..+...+..+.
T Consensus       180 ~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~  236 (246)
T 3f1c_A          180 NHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI  236 (246)
T ss_dssp             HHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence            3 322100   11233445555554 7888888889999999999998866554443

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=98.65  E-value=3.3e-07  Score=76.30  Aligned_cols=154  Identities=14%  Similarity=0.186  Sum_probs=99.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|.++|+++|+|++++..+++.+++.+    .++++... +....|++++++.+.+.+....+.+++++||. 
T Consensus        33 ll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P  107 (197)
T 2wee_A           33 VLGATLDVARQAGFDQLILTLGGAASAVRAAMAL----DGTDVVVV-EDVERGCAASLRVALARVHPRATGIVLMLGDQP  107 (197)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC----TTSEEEEC-C----CCHHHHHHHHTTSCTTEEEEEEEETTCT
T ss_pred             HHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc----CCCEEEEC-CCcccCHHHHHHHHHHHhcccCCeEEEEeCCcC
Confidence            5899999999999999999999988888888754    35665442 33456999999999988731246799999999 


Q ss_pred             c-cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164          80 I-CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT  158 (380)
Q Consensus        80 i-~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~  158 (380)
                      + ....++++++.  +.++.+++..             .  +++.                ..-++|+++.+..+.....
T Consensus       108 ~~~~~~i~~l~~~--~~~~~i~~~~-------------~--~g~~----------------~~P~~~~~~~l~~l~~~~~  154 (197)
T 2wee_A          108 QVAPATLRRIIDV--GPATEIMVCR-------------Y--ADGV----------------GHPFWFSRTVFGELARLHG  154 (197)
T ss_dssp             TCCHHHHHHHHHH--GGGSSEEEEE-------------E--TTEE----------------EEEEEEEGGGHHHHHTCCS
T ss_pred             CCCHHHHHHHHhh--cCCCCEEEEe-------------c--CCCc----------------CCCEEECHHHHHHHHhCCC
Confidence            3 34568888877  3333332211             0  1111                1123788888877652111


Q ss_pred             CcccchhhhhhcC--CcEEEEEe-ccEEEecCChhhHHHH
Q psy9164         159 SIEKEIFPLMSKE--KQLYAMEL-KGFWMDVGQPRDFLKG  195 (380)
Q Consensus       159 ~~~~~il~~l~~~--~~i~~~~~-~~~~~~i~~~~~~~~a  195 (380)
                         ..-+..++++  .++..+.. .+.|.+++||++|..+
T Consensus       155 ---~~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~  191 (197)
T 2wee_A          155 ---DKGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRL  191 (197)
T ss_dssp             ---TTHHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHH
T ss_pred             ---ChhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHH
Confidence               1122233333  25666665 4689999999998765

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=98.40  E-value=3.2e-06  Score=72.36  Aligned_cols=178  Identities=11%  Similarity=0.083  Sum_probs=103.1

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHH-HHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQM-EDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNS   77 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i-~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~g   77 (380)
                      ||+|+++.|.+++ +++|+|++++..+.. .+++.     ++..+.+..  ...+..++++.+...+.. ..+.+++++|
T Consensus        43 li~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~~~~~~~~~--gg~~~~~sv~~al~~~~~~~~~~vlv~~~  115 (234)
T 1vpa_A           43 LFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-----HEKVLGIVE--GGDTRSQSVRSALEFLEKFSPSYVLVHDS  115 (234)
T ss_dssp             TTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-----CTTEEEEEE--CCSSHHHHHHHHHHHHGGGCCSEEEEEET
T ss_pred             HHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-----cCCceEEeC--CCCcHHHHHHHHHHHhhhcCCCEEEEecC
Confidence            7899999999998 999999999876443 44432     122332211  111245678888777731 1345677789


Q ss_pred             Cc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeE-EEEEEEeCHhHHhhcc
Q psy9164          78 DI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKI-NAGMYIFNPSVLDRIE  154 (380)
Q Consensus        78 D~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~-~~giyi~~~~~l~~l~  154 (380)
                      |.  +....+.++++.+.+.++  .+.+.+..+.    ....+++| + .+.++.     .+. .-..++|+.+.+..+.
T Consensus       116 D~Pli~~~~i~~l~~~~~~~~~--~i~~~~~~~~----~~~~~~~g-v-~~~~r~-----~~~~~~~p~~f~~~~l~~~~  182 (234)
T 1vpa_A          116 ARPFLRKKHVSEVLRRARETGA--ATLALKNSDA----LVRVENDR-I-EYIPRK-----GVYRILTPQAFSYEILKKAH  182 (234)
T ss_dssp             TSCCCCHHHHHHHHHHHHHHSE--EEEEEECCSE----EEEEETTE-E-EEECCT-----TEEEEEEEEEEEHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHhcCC--EEEEEecCCc----EEEECCCC-c-ccCChh-----HeeeecCCccccHHHHHHHH
Confidence            97  445568899998876543  3333443332    22234556 5 555431     111 1234578887765543


Q ss_pred             CCCCCcccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         155 IKPTSIEKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       155 ~~~~~~~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                      ..... ..+....+... .++.....++.|.+++||+||..+...+
T Consensus       183 ~~~~~-~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l  227 (234)
T 1vpa_A          183 ENGGE-WADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA  227 (234)
T ss_dssp             TTCCC-CSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred             HhcCC-CCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHH
Confidence            22111 12222223222 3555556667799999999998775543

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=98.22  E-value=7.7e-06  Score=70.07  Aligned_cols=182  Identities=13%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.+++ +++|+|++++..+++.+ +....  . ..+.+...  ..|..++++.+...+. ..+.+++++||.
T Consensus        37 ll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~--~-~~v~~~~~--~~g~~~~i~~al~~~~-~~~~~lv~~~D~  109 (236)
T 1i52_A           37 ILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLAN--H-PQITVVDG--GDERADSVLAGLKAAG-DAQWVLVHDAAR  109 (236)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGG--C-TTEEEEEC--CSSHHHHHHHHHHTST-TCSEEEECCTTC
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcC--C-CCEEEECC--CCCHHHHHHHHHHhcC-CCCEEEEEcCcc
Confidence            6899999999987 89999999987666655 43311  1 12333332  2477888999888873 146689999997


Q ss_pred             -ccC-CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCC-CceeEEEeCCCCCCCCeEEEEEEEeCHhHHhh-ccC
Q psy9164          80 -ICD-FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH-GCIESFIEKPQEFVSNKINAGMYIFNPSVLDR-IEI  155 (380)
Q Consensus        80 -i~~-~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~-l~~  155 (380)
                       +.+ ..+..+++.+.+.++.. +.+.+..+..    ...+++ +++....+.    ..-+..-+.++|+.+.+.. +..
T Consensus       110 P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~i~~~~~~----~~i~~~~~p~~f~~~~l~~~~~~  180 (236)
T 1i52_A          110 PCLHQDDLARLLALSETSRTGG-ILAAPVRDTM----KRAEPGKNAIAHTVDR----NGLWHALTPQFFPRELLHDCLTR  180 (236)
T ss_dssp             TTCCHHHHHHHHGGGGTCSSCE-EEEEECCSCE----EEECTTSSSEEEEECC----TTCEEEEEEEEEEHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHhcCCeE-EEEEeccccE----EEEcCCCCceeeccCh----HhheeeeCCceecHHHHHHHHHH
Confidence             334 45788888776654222 3333333321    112333 455433321    1112223567778765533 211


Q ss_pred             ---CCCCcccchhhhhhc-CCcEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         156 ---KPTSIEKEIFPLMSK-EKQLYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       156 ---~~~~~~~~il~~l~~-~~~i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                         ....+ .+....+.. ..++..+..++.|.++++|+||..+...+
T Consensus       181 ~~~~g~~~-td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~  227 (236)
T 1i52_A          181 ALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL  227 (236)
T ss_dssp             HHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred             HHhcCCCc-ccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHH
Confidence               11111 112222222 23566666677899999999998776544

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=98.14  E-value=8.1e-06  Score=76.83  Aligned_cols=151  Identities=15%  Similarity=0.083  Sum_probs=102.6

Q ss_pred             CHHHHHHHHHHcCCC-----EEEEEc-cCChHHHHHHHc-cccccCCc---EEE-Ee----------------------e
Q psy9164           1 MLLHQIEALVEAGVR-----EVILAV-SYRAEQMEDELT-VETKKLGI---SLV-FS----------------------H   47 (380)
Q Consensus         1 li~~~l~~l~~~gi~-----~i~vv~-~~~~~~i~~~l~-~~~~~~~~---~i~-~~----------------------~   47 (380)
                      +|+++++++.+.|.+     .+++.+ .+..+.+++|++ + ...+++   ++. +.                      .
T Consensus       106 fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~-~~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~  184 (505)
T 2oeg_A          106 FLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKAR-YPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAY  184 (505)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHH-CHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhh-hhccCCCccceEEEEEcCEEeEecCCCceeecCCCCcc
Confidence            478999999988633     454545 456899999998 5 233344   232 21                      1


Q ss_pred             cCCCCCCchHHHHh------HHhhCCCCCcEEEEeCCcccC-CChHHHHHHHHhcCCcEEEEEEEcCCC-CceeEEEEC-
Q psy9164          48 ENEPLGTAGPLALA------KDILNKSQEPFFVLNSDIICD-FPFKDLVSFHKNHGKEGTIVVTQVEEP-SKYGVVLYN-  118 (380)
Q Consensus        48 ~~~~~gt~~al~~a------~~~i~~~~~~~lv~~gD~i~~-~~l~~~l~~h~~~~~~~tl~~~~~~~~-~~~g~v~~d-  118 (380)
                      +..+.|||+.+...      ..++....+.|+|+++|.++. .|+ .++.+|.++++++++.+.+..++ ..+|++..+ 
T Consensus       185 e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~-~llg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~  263 (505)
T 2oeg_A          185 EWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK-RVLAYMEKEKIDFLMEVCRRTESDKKGGHLARQT  263 (505)
T ss_dssp             GEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-HHHHHHHHHTCSEEEEEEECCTTCCSSEEEEEEE
T ss_pred             ccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-HHHHHHHhcCCcEEEEEEEecCCccceeEEEEec
Confidence            22356999998744      334422367899999999874 566 89999999999999999888776 578887762 


Q ss_pred             -----CCCc-------e--eEEEeCCCC--------CCCCeEEEEEEEeCHhHHhhc
Q psy9164         119 -----EHGC-------I--ESFIEKPQE--------FVSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus       119 -----~~~~-------v--~~~~ek~~~--------~~~~~~~~giyi~~~~~l~~l  153 (380)
                           .+|+       +  +++.+-|.+        ..-.+.++....|+-+.++.+
T Consensus       264 ~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn~~~~l~~l~~~  320 (505)
T 2oeg_A          264 VYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLET  320 (505)
T ss_dssp             EEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEEEEEEHHHHHHH
T ss_pred             ccccccCCccccccCceeEEEeccCChhhhhcccCccccCeeEEEEEEEEHHHHHHH
Confidence                 4666       3  333333332        223457899999998887654

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=98.05  E-value=8.9e-06  Score=67.83  Aligned_cols=144  Identities=15%  Similarity=0.114  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+++.|..+ +++|+|++++..+   +++.      ++++.. .+....|++++++.+.+.+.  .+.+++++||..
T Consensus        42 ll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~------~~~~v~-~~~~~~g~~~~i~~al~~~~--~~~~lv~~~D~P  108 (201)
T 2e8b_A           42 VIERVYETAKSV-FKEVYIVAKDREK---FSFL------NAPVVL-DEFEESASIIGLYTALKHAK--EENVFVLSGDLP  108 (201)
T ss_dssp             HHHHHHHHHHTT-CSEEEEEESCSGG---GGGG------TCCEEE-CCCSSCCHHHHHHHHHHHCS--SSEEEEEETTCT
T ss_pred             HHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC------CceEEe-cCCCCCCcHHHHHHHHHHcC--CCCEEEEeCCcC
Confidence            589999999998 9999999988654   2221      344432 23355799999999999884  577999999983


Q ss_pred             -cCCC-hHH-HHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC--
Q psy9164          81 -CDFP-FKD-LVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI--  155 (380)
Q Consensus        81 -~~~~-l~~-~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~--  155 (380)
                       .+.+ ++. ++    +  .++++.             ..  +++             ....+|+| |+++.++.+..  
T Consensus       109 ~i~~~~i~~~l~----~--~~~~v~-------------~~--~g~-------------~~p~~giy-~~~~~~~~l~~~~  153 (201)
T 2e8b_A          109 LMKKETVLYVLE----N--FKEPVS-------------VA--KTE-------------KLHTLVGV-YSKKLLEKIEERI  153 (201)
T ss_dssp             TCCHHHHHHHHH----T--CCSSEE-------------EE--ESS-------------SEEEEEEE-EEGGGHHHHHHHH
T ss_pred             cCCHHHHHHHHh----c--CCEEEE-------------ec--CCc-------------eeeEEEEE-eChhHHHHHHHHH
Confidence             3433 555 44    1  122110             00  111             24568999 99998876642  


Q ss_pred             -CCCCcccchhhhhhcCCcEEEEEe--ccEEE--ecCChhhHHHHH
Q psy9164         156 -KPTSIEKEIFPLMSKEKQLYAMEL--KGFWM--DVGQPRDFLKGM  196 (380)
Q Consensus       156 -~~~~~~~~il~~l~~~~~i~~~~~--~~~~~--~i~~~~~~~~a~  196 (380)
                       +......++++.+    ++.....  .+.|.  +++||++|.++.
T Consensus       154 ~~g~~~~~~~l~~~----~~~~~~~~~~~~~~~~dintpedl~~~~  195 (201)
T 2e8b_A          154 KKGDYRIWALLKDV----GYNEVEIPEELRYTLLNMNTKEDLKRIL  195 (201)
T ss_dssp             HTTCCCHHHHHHHH----CCEEEECCGGGGGGGCCSCCC-------
T ss_pred             HcCCchHHHHHHHC----CeEEeccccccchhhcCCCCHHHHHHHH
Confidence             1111112233332    3444444  35688  999999987653

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=98.04  E-value=5.8e-05  Score=68.82  Aligned_cols=153  Identities=16%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             CHHHHHHHHHH-------------cCCCEEEEEccCChHHHHHHHccccccCCc---EEEEee-----------------
Q psy9164           1 MLLHQIEALVE-------------AGVREVILAVSYRAEQMEDELTVETKKLGI---SLVFSH-----------------   47 (380)
Q Consensus         1 li~~~l~~l~~-------------~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~---~i~~~~-----------------   47 (380)
                      +++++++++.+             .++..+++...+..+.+++|+++ ...+++   ++.+..                 
T Consensus        68 ~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~~-~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~  146 (405)
T 3oc9_A           68 IFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKE-HQYFGLSSEQIHCFPQGMLPVVDFNGKILYEK  146 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHHH-TGGGGSCTTSEEEEECCEEECBCTTSCBCEEE
T ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHHh-CcccCCCccceEEEeeCceeEEecCCCeecCC
Confidence            36777777753             57887777777889999999987 344454   355432                 


Q ss_pred             ----cCCCCCCchHHHHhHH------hhCCCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCcEEEEEEEcCCC-CceeEE
Q psy9164          48 ----ENEPLGTAGPLALAKD------ILNKSQEPFFVLNSDI-ICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-SKYGVV  115 (380)
Q Consensus        48 ----~~~~~gt~~al~~a~~------~i~~~~~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-~~~g~v  115 (380)
                          +..+.|+++.+.....      +..+..+.+.+.+.|. +.......++.+|.++++++++-+.+..++ .+.|.+
T Consensus       147 ~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl  226 (405)
T 3oc9_A          147 KDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVL  226 (405)
T ss_dssp             TTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEE
T ss_pred             CCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceE
Confidence                2346799887765432      1211246788888899 888888999999999999999988887766 788887


Q ss_pred             EE-CCCCceeEEEeCCCC--C-------CCCeEEEEEEEeCHhHHhhcc
Q psy9164         116 LY-NEHGCIESFIEKPQE--F-------VSNKINAGMYIFNPSVLDRIE  154 (380)
Q Consensus       116 ~~-d~~~~v~~~~ek~~~--~-------~~~~~~~giyi~~~~~l~~l~  154 (380)
                      .. |..-+++++.|.|.+  .       .-+..+.++++|+.++++.+.
T Consensus       227 ~~~dg~~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~fs~~fL~~i~  275 (405)
T 3oc9_A          227 VKEQERIKVVEYTELTDELNKQLSNGEFIYNCGHISINGYSTSFLEKAA  275 (405)
T ss_dssp             EEETTEEEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred             EEECCeeEEEEEeeCCHHHhhcCCCCceeeccceeEeeecCHHHHHHhh
Confidence            75 333467777775553  1       234678999999999997653

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=97.99  E-value=2.7e-05  Score=66.24  Aligned_cols=179  Identities=15%  Similarity=0.183  Sum_probs=110.9

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC--CCcEEEEe
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS--QEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~--~~~~lv~~   76 (380)
                      ||+|+++.+.+++ +++|+|++++.. +.+++++..     .+.+  ...  ..+-.++++.+...+...  .+.+|++.
T Consensus        37 ll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-----~v~~--v~g--g~~r~~sv~~gl~~~~~~~~~d~Vlv~~  107 (231)
T 3q80_A           37 LIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-----RAMI--VAG--GSNRTDTVNLALTVLSGTAEPEFVLVHD  107 (231)
T ss_dssp             HHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-----GCEE--EEC--CSSHHHHHHHHHGGGC---CCSEEEECC
T ss_pred             HHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-----CeEE--EcC--CCchHHHHHHHHHHhhhcCCCCEEEEEc
Confidence            6899999999985 999999998865 667666643     2332  221  112247888888888421  24578889


Q ss_pred             CCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhc-
Q psy9164          77 SDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-  153 (380)
Q Consensus        77 gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l-  153 (380)
                      ||.  +....+..+++.+++ +.+..+...+..++.++    .++++++....+..   ....+.| -+.|+.+.|... 
T Consensus       108 ~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~dt~~~----~~~~g~v~~~~~r~---~l~~~qT-Pq~F~~~~L~~a~  178 (231)
T 3q80_A          108 AARALTPPALVARVVEALRD-GYAAVVPVLPLSDTIKA----VDANGVVLGTPERA---GLRAVQT-PQGFTTDLLLRSY  178 (231)
T ss_dssp             TTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCSSCEEE----ECTTSBEEECCCGG---GEEEECS-CEEEEHHHHHHHH
T ss_pred             CCcCCCCHHHHHHHHHHHhh-cCCeEEEEEeccCCEEE----EcCCCcEEEecchh---heEEEcC-CcEEEHHHHHHHH
Confidence            997  445558899988876 23456666677776443    46677776665431   1122344 578888766443 


Q ss_pred             c---CC-CCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHH
Q psy9164         154 E---IK-PTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       154 ~---~~-~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~  197 (380)
                      +   .+ ......|-...+...+ ++...+-+..+..+.+|+|+..+..
T Consensus       179 ~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~  227 (231)
T 3q80_A          179 QRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQA  227 (231)
T ss_dssp             HHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHH
Confidence            2   11 1111233344444344 5666665666889999999876643

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=97.96  E-value=2e-05  Score=67.50  Aligned_cols=170  Identities=14%  Similarity=0.090  Sum_probs=100.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.  ..++++|+|++++   .+.+ +..    .++  .+...  ..+...+++.+...+.  .+.+++++||. 
T Consensus        54 li~~~l~~--~~~~~~ivvv~~~---~~~~-~~~----~~v--~~~~~--~~~~~~~i~~al~~~~--~~~vlv~~~D~P  117 (236)
T 2px7_A           54 LLEWTLAA--FRDAAEVLVALPP---GAEP-PKG----LGA--VFLEG--GATRQASVARLLEAAS--LPLVLVHDVARP  117 (236)
T ss_dssp             HHHHHHHH--TTTCSEEEEEECT---TCCC-CTT----CSC--EEEEC--CSSHHHHHHHHHHHCC--SSEEEECCTTCC
T ss_pred             HHHHHHHh--cCCCCeEEEEeCH---HHHH-hhc----CCc--EEEeC--CCchHHHHHHHHHHcC--CCeEEEecCccc
Confidence            68999999  7799999999986   1222 221    233  33322  2356788898888883  45689999997 


Q ss_pred             c-cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhh-ccC--
Q psy9164          80 I-CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDR-IEI--  155 (380)
Q Consensus        80 i-~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~-l~~--  155 (380)
                      + ....++.+++.+++.+  ..+.+.+..++..+    .+ +|++..+.+++.   ...+. ..++|+++.+.. +..  
T Consensus       118 ~~~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~~----~~-~G~v~~~~~~~~---~~~~~-~~~~f~~~~l~~~~~~~~  186 (236)
T 2px7_A          118 FVSRGLVARVLEAAQRSG--AAVPVLPVPDTLMA----PE-GEAYGRVVPREA---FRLVQ-TPQGFFTALLREAHAYAR  186 (236)
T ss_dssp             CCCHHHHHHHHHHHHHHS--EEEEEEECCSEEEE----EC-SSSCEEEECGGG---CEEEC-SCEEEEHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcC--CeEEEEecCCcEEE----ec-CCeEEecCChHh---hcccc-CCeEEcHHHHHHHHHHHH
Confidence            4 3455889998887654  33334444443222    23 677776665321   11122 256778776543 211  


Q ss_pred             -CCCCcccchhhhhhc-CCcEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         156 -KPTSIEKEIFPLMSK-EKQLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       156 -~~~~~~~~il~~l~~-~~~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                       ....+ .+....+.. ..++..+..++.|.++++|++|..+...
T Consensus       187 ~~g~~~-~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~  230 (236)
T 2px7_A          187 RKGLEA-SDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEAL  230 (236)
T ss_dssp             HHTCCC-SSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred             hcCCCc-hhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHH
Confidence             11111 112222222 2356667777789999999999877543

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=97.77  E-value=0.00016  Score=68.16  Aligned_cols=150  Identities=15%  Similarity=0.242  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHc--------C------CCEEEEEccCChHHHHHHHccccccCCc---EEEEeec---------------
Q psy9164           1 MLLHQIEALVEA--------G------VREVILAVSYRAEQMEDELTVETKKLGI---SLVFSHE---------------   48 (380)
Q Consensus         1 li~~~l~~l~~~--------g------i~~i~vv~~~~~~~i~~~l~~~~~~~~~---~i~~~~~---------------   48 (380)
                      +|+++++++.++        |      +..+++..++..+.+++|+++. ..+++   .+.+..|               
T Consensus       136 ~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l  214 (486)
T 2yqc_A          136 LFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILL  214 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCE
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHhhc-cccCCCcceEEEEecccceeEcCCCCcccc
Confidence            478899999887        7      8888888888999999999873 34454   2332221               


Q ss_pred             -------CCCCCCchHHHHhHH------hhCCCCCcEEEEeCCc-cc-CCChHHHHHHHHhcCCcEEEEEEEcCCC-Cce
Q psy9164          49 -------NEPLGTAGPLALAKD------ILNKSQEPFFVLNSDI-IC-DFPFKDLVSFHKNHGKEGTIVVTQVEEP-SKY  112 (380)
Q Consensus        49 -------~~~~gt~~al~~a~~------~i~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~tl~~~~~~~~-~~~  112 (380)
                             ..+.|+|+.+.....      +.....+.+.+.+.|. +. ..| ..++..|.++++++++.+.+..++ .+.
T Consensus       215 ~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~  293 (486)
T 2yqc_A          215 ELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDANESV  293 (486)
T ss_dssp             EETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCSTTCCC
T ss_pred             CCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccC-HHHHHHHHHcCCCEEEEEEEcCCCCCce
Confidence                   146799998765432      2222256677778885 33 344 467889999999999888776444 778


Q ss_pred             eEEEECC-CC--ceeEEEeCCCC------------CCCCeEEEEEEEeCHhHHhh
Q psy9164         113 GVVLYNE-HG--CIESFIEKPQE------------FVSNKINAGMYIFNPSVLDR  152 (380)
Q Consensus       113 g~v~~d~-~~--~v~~~~ek~~~------------~~~~~~~~giyi~~~~~l~~  152 (380)
                      |.+.... +|  +++++.|+|..            ...+..+++.|+|+.++++.
T Consensus       294 Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~  348 (486)
T 2yqc_A          294 GLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNK  348 (486)
T ss_dssp             CEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEEEEEEHHHHHH
T ss_pred             eEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccceeEEEEEEeHHHHHH
Confidence            8877532 45  47777777641            12468899999999999876

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=97.52  E-value=0.00011  Score=67.04  Aligned_cols=165  Identities=12%  Similarity=0.059  Sum_probs=95.5

Q ss_pred             CHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVE-AGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.|.+ .++++|+|+++ ..+.+++++.+      +++  .  ....|...+++.+.+.+.  .+.++++.||.
T Consensus        33 Li~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~~------v~~--v--~~g~g~~~sv~~aL~~l~--~d~vlv~~~D~   99 (371)
T 1w55_A           33 LWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTKN------YEF--I--EGGDTRAESLKKALELID--SEFVMVSDVAR   99 (371)
T ss_dssp             HHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCSS------SEE--E--ECCSSHHHHHHHHHTTCC--SSEEEEEETTC
T ss_pred             HHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhCC------CEE--E--eCCCChHHHHHHHHHhcC--CCeEEEEeCCc
Confidence            68999999998 58999999998 66666555422      333  2  223455688988888874  56789999998


Q ss_pred             -c-cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164          80 -I-CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP  157 (380)
Q Consensus        80 -i-~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~  157 (380)
                       + ....++++++.+++.+  .++...+..+..++.....+ ...+.. ..            .-+.|+.+.+..+....
T Consensus       100 Pli~~~~i~~li~~~~~~~--a~i~~~~~~d~vk~v~~t~~-r~~l~~-~~------------~P~~f~~~~l~~~~~~~  163 (371)
T 1w55_A          100 VLVSKNLFDRLIENLDKAD--CITPALKVADTTLFDNEALQ-REKIKL-IQ------------TPQISKTKLLKKALDQN  163 (371)
T ss_dssp             TTCCHHHHHHHHTTGGGCS--EEEEEECCCSCEEETTEEEC-GGGCCE-EC------------SCEEEEHHHHHHHTSSC
T ss_pred             ccCCHHHHHHHHHHHHhcC--CEEEEEEeecCeeeeeeecC-ccceee-cC------------CcceecHHHHHHHHHhc
Confidence             3 3445888888776653  34444443333111000000 000100 00            12467777664432221


Q ss_pred             CCcccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHH
Q psy9164         158 TSIEKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       158 ~~~~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                      .. ..+....+... .++..++.+..|.++++|+||..+
T Consensus       164 ~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~A  201 (371)
T 1w55_A          164 LE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKL  201 (371)
T ss_dssp             CC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGS
T ss_pred             cc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHH
Confidence            11 12222233222 367667767789999999998654

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=97.27  E-value=0.0005  Score=57.06  Aligned_cols=80  Identities=14%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|.. ++++|+|++++..+++.    +    .++++.....+...|++.+++.+.+.+.  .+.+++++||. 
T Consensus        35 li~~~l~~l~~-~~~~ivvv~~~~~~~~~----~----~~~~~v~~~~~~~~G~~~si~~~l~~~~--~~~vlv~~~D~P  103 (201)
T 1e5k_A           35 LWQHVADALMT-QLSHVVVNANRHQEIYQ----A----SGLKVIEDSLADYPGPLAGMLSVMQQEA--GEWFLFCPCDTP  103 (201)
T ss_dssp             HHHHHHHHHHH-HCSCEEEECSSSHHHHH----T----TSCCEECCCTTCCCSHHHHHHHHHHHCC--SSEEEEEETTCT
T ss_pred             HHHHHHHHHHh-hCCEEEEEcCCcHHHHh----h----cCCeEEecCCCCCCCHHHHHHHHHHhCC--CCcEEEEeCCcC
Confidence            58999999985 69999999988764432    1    2444432222333689999999999884  56799999999 


Q ss_pred             c-cCCChHHHHHH
Q psy9164          80 I-CDFPFKDLVSF   91 (380)
Q Consensus        80 i-~~~~l~~~l~~   91 (380)
                      + ....++.+++.
T Consensus       104 ~i~~~~i~~l~~~  116 (201)
T 1e5k_A          104 YIPPDLAARLNHQ  116 (201)
T ss_dssp             TCCTTHHHHHHHT
T ss_pred             cCCHHHHHHHHhh
Confidence            4 44447788775

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=97.06  E-value=0.00027  Score=58.53  Aligned_cols=151  Identities=15%  Similarity=0.219  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|..+   +++|++++..+++.+++.     .++ +.. ......|++++++.+.+.+. ..+.+++++||. 
T Consensus        30 ll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~-----~~~-~v~-~~~~~~G~~~si~~al~~~~-~~~~vlv~~~D~P   98 (197)
T 3d5n_A           30 IIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM-----DQI-VIY-NPFWNEGISTSLKLGLRFFK-DYDAVLVALGDMP   98 (197)
T ss_dssp             HHHHHHHHTTTS---BCCEEECTTHHHHGGGCT-----TSC-EEE-CTTGGGCHHHHHHHHHHHTT-TSSEEEEEETTCC
T ss_pred             HHHHHHHHHHhC---CEEEEECCCHHHHHHHhc-----CCE-EEE-CCCCCCCHHHHHHHHHHhhc-cCCcEEEEeCCcc
Confidence            589999999877   888989887766666553     244 322 22334699999999999884 125799999999 


Q ss_pred             ccC-CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164          80 ICD-FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT  158 (380)
Q Consensus        80 i~~-~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~  158 (380)
                      +.+ ..++++++.+ +.++++++...               +++.    ..|            .+|+++.+..+.....
T Consensus        99 ~i~~~~i~~l~~~~-~~~~~~~~~~~---------------~g~~----~~P------------~~~~~~~l~~l~~l~g  146 (197)
T 3d5n_A           99 FVTKEDVNKIINTF-KPNCKAVIPTH---------------KGER----GNP------------VLISKSLFNEIEKLRG  146 (197)
T ss_dssp             CSCHHHHHHHHHTC-CTTCSEEEEEE---------------TTEE----CSC------------EEEEHHHHHHHHHCCT
T ss_pred             ccCHHHHHHHHHHh-cCCCcEEEEEe---------------CCcc----cCC------------EEECHHHHHHHHccCC
Confidence            444 4477888766 44443332211               1110    111            2788888776542111


Q ss_pred             CcccchhhhhhcCC-cEEEEEe--ccEEEecCChhhHHHHH
Q psy9164         159 SIEKEIFPLMSKEK-QLYAMEL--KGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       159 ~~~~~il~~l~~~~-~i~~~~~--~~~~~~i~~~~~~~~a~  196 (380)
                        ..++-..+.+.+ ++.....  .+.|.+++||+||..+.
T Consensus       147 --~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~  185 (197)
T 3d5n_A          147 --DVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLR  185 (197)
T ss_dssp             --TCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC-------
T ss_pred             --CccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHH
Confidence              123333333322 3444444  35789999999987653

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=95.23  E-value=0.049  Score=45.15  Aligned_cols=87  Identities=10%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|..+   +|+|++++ .+.+..+..    ..++++.. ......|...+++.+...+   .+.+ ++.||. 
T Consensus        28 li~~~~~~l~~~---~vvvv~~~-~~~~~~~~~----~~~~~~v~-d~~~~~G~~~si~~gl~~~---~~~v-v~~~D~P   94 (208)
T 3ngw_A           28 LIEWVLEKYSPF---QTVFVCRD-EKQAEKLSS----RYEAEFIW-DLHKGVGSIAGIHAALRHF---GSCV-VAAIDMP   94 (208)
T ss_dssp             HHHHHHHHHTTS---EEEEECSS-HHHHHHHHT----TSCSCEEC-CTTCCCSHHHHHHHHHHHH---SSEE-EEETTCT
T ss_pred             HHHHHHHHhcCC---CEEEEECC-HHHHHHHHH----hcCCeEEe-cCCCCCChHHHHHHHHHHc---CCCE-EEECCcc
Confidence            689999999877   89998874 344444322    23455432 2222346668899888888   4567 999998 


Q ss_pred             ccC-CChHHHHHHHHhcCCcEE
Q psy9164          80 ICD-FPFKDLVSFHKNHGKEGT  100 (380)
Q Consensus        80 i~~-~~l~~~l~~h~~~~~~~t  100 (380)
                      +.+ ..++.+++.+.+.+.++.
T Consensus        95 ~i~~~~i~~l~~~~~~~~~~~v  116 (208)
T 3ngw_A           95 FVKPEVLEHLYKEGEKAGCDAL  116 (208)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEE
T ss_pred             CCCHHHHHHHHHHhhcCCCCEE
Confidence            434 447888887775454443

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=92.81  E-value=0.22  Score=41.12  Aligned_cols=74  Identities=22%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHcCCCEE-EEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAGVREV-ILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i-~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.+..+++.++ ++++++...      ..   .+++++  ..+.  .|.+.++..+...+   .+.++++.||+
T Consensus        35 ll~~vl~~l~~~~~~~v~vvv~~~~~~------~~---~~~~~~--v~~~--~gl~~sl~~a~~~~---~~~vlvi~~D~   98 (211)
T 2i5e_A           35 MLNQVISSLKGAGIEQVDILSPSVYGL------EE---MTEARV--LLDE--KDLNEALNRYLKEA---EEPVLIVMADL   98 (211)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEESSCTTC------SS---CCSSEE--EECC--SCHHHHHHHHHHHC---CSCEEEECSCC
T ss_pred             HHHHHHHHHHHcCCceEEEEEcCcHHH------Hh---hcCCEE--EECC--CCHHHHHHHHHHhc---CCCEEEEcCCc
Confidence            68999999999999999 888876431      11   134544  3343  67788898888777   57899999998


Q ss_pred             --ccCCChHHHHH
Q psy9164          80 --ICDFPFKDLVS   90 (380)
Q Consensus        80 --i~~~~l~~~l~   90 (380)
                        +....++++++
T Consensus        99 P~l~~~~i~~l~~  111 (211)
T 2i5e_A           99 PLLSPEHIKEISS  111 (211)
T ss_dssp             TTCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHHc
Confidence              44444666665

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=88.47  E-value=0.57  Score=39.62  Aligned_cols=86  Identities=13%  Similarity=0.064  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHH---HHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhh-CCCCCcEEEEe
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQM---EDELTVETKKLGISLVFSHENEPLGTAGPLALAKDIL-NKSQEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i---~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i-~~~~~~~lv~~   76 (380)
                      |+.++++.+..++...++++.+.....+   ..++..     ++  .+..| ...|-+.++..+...+ ....+.++++.
T Consensus        39 ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~~~-----~~--~~~~q-~~~gLg~rl~~a~~~~~~~~~~~vliig  110 (242)
T 3cgx_A           39 FVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLGP-----QH--MFAAQ-QGLDLGERMKHAMQKAFDDGYDRVVLMG  110 (242)
T ss_dssp             HHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHHCT-----TS--EEEEC-CSSSHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhccC-----Cc--EEecC-CCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            5789999999999888877777655443   444311     22  34444 3446778888877654 22246799999


Q ss_pred             CCc--ccCCChHHHHHHHHh
Q psy9164          77 SDI--ICDFPFKDLVSFHKN   94 (380)
Q Consensus        77 gD~--i~~~~l~~~l~~h~~   94 (380)
                      +|+  +...++.++++.+..
T Consensus       111 aD~P~L~~~~l~~a~~~l~~  130 (242)
T 3cgx_A          111 SDIPDYPCELVQKALNDLQH  130 (242)
T ss_dssp             SSCTTCCHHHHHHHHHHTTT
T ss_pred             CCCCCCCHHHHHHHHHHhcc
Confidence            998  677778888876544

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=86.92  E-value=7.5  Score=32.36  Aligned_cols=90  Identities=13%  Similarity=0.100  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHcCCC--EEEEEccCChHHHHHHHccccccCCcEEEEeecC--------CCCCCchHHHHhHHhhCCCCCc
Q psy9164           2 LLHQIEALVEAGVR--EVILAVSYRAEQMEDELTVETKKLGISLVFSHEN--------EPLGTAGPLALAKDILNKSQEP   71 (380)
Q Consensus         2 i~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~--------~~~gt~~al~~a~~~i~~~~~~   71 (380)
                      |..+|+.+.++...  +|+|+-....+...+.+.+...  ...+.+...+        ...|-+.+...+.+...  .+-
T Consensus        16 l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~--g~~   91 (255)
T 1qg8_A           16 VAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE--GEY   91 (255)
T ss_dssp             HHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--STTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC--CSE
T ss_pred             HHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--cCCEEEEecccccccccccccCHHHHHHHHHHHcC--CCE
Confidence            67788888876543  5666655555666666665322  3345666655        56677777777777773  455


Q ss_pred             EEEEeCCcccCCC-hHHHHHHHHhc
Q psy9164          72 FFVLNSDIICDFP-FKDLVSFHKNH   95 (380)
Q Consensus        72 ~lv~~gD~i~~~~-l~~~l~~h~~~   95 (380)
                      ++++.+|.+...+ +..+++.+.+.
T Consensus        92 i~~lD~Dd~~~~~~l~~~~~~~~~~  116 (255)
T 1qg8_A           92 ITYATDDNIYMPDRLLKMVRELDTH  116 (255)
T ss_dssp             EEEEETTEEECTTHHHHHHHHHHHC
T ss_pred             EEEeCCCCccChHHHHHHHHHHHhC
Confidence            6788999877766 77888877765

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=83.81  E-value=7.7  Score=36.04  Aligned_cols=95  Identities=14%  Similarity=0.198  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHcCC----CEEEEEccCChH-HHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164           2 LLHQIEALVEAGV----REVILAVSYRAE-QMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN   76 (380)
Q Consensus         2 i~~~l~~l~~~gi----~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~   76 (380)
                      |...|+.+.+.-.    .+|+||-....+ ...+.+++........+.++..++..|-+.+...+.....  .+-++++.
T Consensus        45 l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd~i~flD  122 (472)
T 1xhb_A           45 LLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR--GQVITFLD  122 (472)
T ss_dssp             HHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC--SSEEEEEE
T ss_pred             HHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc--CCeEEEEC
Confidence            5567788877643    377777643322 2333332211122224666777777788888888877773  44567789


Q ss_pred             CCcccCCC-hHHHHHHHHhcCCc
Q psy9164          77 SDIICDFP-FKDLVSFHKNHGKE   98 (380)
Q Consensus        77 gD~i~~~~-l~~~l~~h~~~~~~   98 (380)
                      +|...+.+ |..+++.+.+....
T Consensus       123 ~D~~~~p~~L~~ll~~~~~~~~~  145 (472)
T 1xhb_A          123 AHCECTAGWLEPLLARIKHDRRT  145 (472)
T ss_dssp             SSEEECTTCHHHHHHHHHHCTTE
T ss_pred             CCeEeCccHHHHHHHHHHhCCCE
Confidence            99977666 78888888766543

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=82.50  E-value=5.2  Score=32.98  Aligned_cols=92  Identities=15%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHcCCC--EEEEEccCChH----HHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164           2 LLHQIEALVEAGVR--EVILAVSYRAE----QMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL   75 (380)
Q Consensus         2 i~~~l~~l~~~gi~--~i~vv~~~~~~----~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~   75 (380)
                      |...|+.+.+....  +|+|+-....+    .++++..+     ...+.+.. .+..|-+.+...+.+...  .+-++++
T Consensus        20 l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~-----~~~i~~i~-~~n~G~~~a~N~g~~~a~--g~~i~~l   91 (240)
T 3bcv_A           20 LDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQ-----YPNIKVIH-KKNAGLGMACNSGLDVAT--GEYVAFC   91 (240)
T ss_dssp             HHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHH-----CSSEEEEE-CCCCCHHHHHHHHHHHCC--SSEEEEC
T ss_pred             HHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhh-----CCCEEEEE-CCCCChHHHHHHHHHHcC--CCEEEEE
Confidence            67788888876543  56665443222    33333322     11344444 356787888878777773  4456777


Q ss_pred             eCCcccCCC-hHHHHHHHHhcCCcEEE
Q psy9164          76 NSDIICDFP-FKDLVSFHKNHGKEGTI  101 (380)
Q Consensus        76 ~gD~i~~~~-l~~~l~~h~~~~~~~tl  101 (380)
                      .+|.+...+ |..+++...+.+.++..
T Consensus        92 D~Dd~~~~~~l~~l~~~~~~~~~~~v~  118 (240)
T 3bcv_A           92 DSDDYVDSDMYMTMYNVAQKYTCDAVF  118 (240)
T ss_dssp             CTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred             CCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence            899877777 77888877765555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	380
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	6e-42
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	3e-41
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	1e-33
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	2e-22
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	6e-18
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	1e-13
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	6e-13
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	1e-09
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	2e-09
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	2e-09
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	8e-08
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	3e-07
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	2e-04
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	0.001
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	6e-07
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	2e-06
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	5e-06
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	2e-06
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	4e-05
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	0.002
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	5e-05
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	5e-05
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	2e-04
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	3e-04
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	5e-04
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	9e-04
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	0.002

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score =  146 bits (370), Expect = 6e-42
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 10/202 (4%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+RE+++  +   +     L  +  + GI L ++ +  P G A    +
Sbjct: 34  MIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFII 93

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            +  LN       VL  +I     F   +       +  T+   QV +P ++GVV ++++
Sbjct: 94  GETFLNGE-PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN 152

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSIEKE-----IFPLMSKEKQL 174
               S  EKP++  SN    G+Y ++  V++  + +KP S   E     I  +  +   L
Sbjct: 153 FRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKP-SERGELEITSINQMYLEAGNL 211

Query: 175 --YAMELKGFWMDVGQPRDFLK 194
               +     W+D G     ++
Sbjct: 212 TVELLGRGFAWLDTGTHDSLIE 233

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  144 bits (366), Expect = 3e-41
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 10/202 (4%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+RE+++  + +      +L  +    G+ L ++ +  P G A    +
Sbjct: 34  MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 93

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            +  +        VL  ++     F +L+          ++    V +P +YGVV +++ 
Sbjct: 94  GESFIGN-DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 152

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSIEKEIF-----PLMSKEKQL 174
           G   S  EKP E  SN    G+Y ++  V+D    +KP S   E+          +  QL
Sbjct: 153 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKP-SPRGELEITDVNRAYLERGQL 211

Query: 175 YA--MELKGFWMDVGQPRDFLK 194
               M     W+D G     L+
Sbjct: 212 SVEIMGRGYAWLDTGTHDSLLE 233

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  124 bits (313), Expect = 1e-33
 Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 8/201 (3%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           M+ + +  L+ AG+R++++  + R   +  +L  +  + G+   +  + EP G A    +
Sbjct: 36  MIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIV 95

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
            KD +  S +   VL  ++     F +++    +      I    V +P  +GVV ++  
Sbjct: 96  GKDFIGDS-KVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE 154

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFP-------LMSKEKQ 173
           G + S  EKP    SN +  G+Y ++  V++       S   E+         L   + +
Sbjct: 155 GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLR 214

Query: 174 LYAMELKGFWMDVGQPRDFLK 194
           +  M     W+D G     L+
Sbjct: 215 VELMGRGMAWLDTGTHDGLLE 235

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 94.3 bits (233), Expect = 2e-22
 Identities = 30/236 (12%), Positives = 77/236 (32%), Gaps = 42/236 (17%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVF-------------SH 47
           ++   +   + + + ++ +   + +  +   L+                          +
Sbjct: 45  LIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEN 104

Query: 48  ENEPLGTAGPLALAKDIL-NKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV 106
            +   GTA  +     +    +   + +L  D +    ++  +  H+    + T+    +
Sbjct: 105 PDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPM 164

Query: 107 EE--PSKYGVVLYNEHGCIESFIEKPQ---------------------EFVSNKINAGMY 143
           +E   + +G++  +E G I  F EKPQ                     + +    + G+Y
Sbjct: 165 DEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIY 224

Query: 144 IFNPSVLDRIE----IKPTSIEKEIFP-LMSKEKQLYAMELKGFWMDVGQPRDFLK 194
           + +  V+  +             E+ P   S   ++ A    G+W D+G    F  
Sbjct: 225 VISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYN 280

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 80.5 bits (197), Expect = 6e-18
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 30/226 (13%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDEL--------------------TVETKKLG 40
           +L H ++     G+++ I+   Y+   +++                          +   
Sbjct: 35  ILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEP 94

Query: 41  ISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGT 100
            ++      +   T G L    +   K  E F     D + D   K  + FHK HGK+ T
Sbjct: 95  WNVTLVDTGDSSMTGGRLKRVAEY-VKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKAT 153

Query: 101 IVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI 160
           +  T    P ++G +            +   +     IN G ++ NPSV+D I+   T+ 
Sbjct: 154 L--TATFPPGRFGALDIQAGQVRSFQEKPKGDG--AMINGGFFVLNPSVIDLIDNDATTW 209

Query: 161 EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQK 206
           E+E    ++++ +L A E  GFW  +   RD      +YL  L +K
Sbjct: 210 EQEPLMTLAQQGELMAFEHPGFWQPMDTLRDK-----VYLEGLWEK 250

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 68.0 bits (165), Expect = 1e-13
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 10/160 (6%)

Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHS---WLEGC 273
           I  +  V PTA +  G  IG N  IGP  ++   V I   T+L+  +V +       +  
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDEL 326
           I  +  +      ++         IG +  + + V +         +T +G D ++    
Sbjct: 62  IYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINA 121

Query: 327 YVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPH 366
           ++     + ++ I ++   L   V V D   + G   +  
Sbjct: 122 HIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQ 161

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (149), Expect = 6e-13
 Identities = 18/66 (27%), Positives = 27/66 (40%)

Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
           + G +       I     I  NVT+G  V I  G  IK S I  D  +  ++ +E   + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 277 WKCVVG 282
             C +G
Sbjct: 71  AACTIG 76

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 12/148 (8%)

Query: 210 LLKEGDGIV--GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSH 267
           L ++GD  +   N +      I    RI    T+   V I   V I R+ I   A +  +
Sbjct: 51  LSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDN 110

Query: 268 SWL-EGCIIGWKCVVGQWVRMENITVLGECIIG---------WKCVVGQWVRMENITVLG 317
             +    +     + G    +    +L    +          +        R+ +   L 
Sbjct: 111 VTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLY 170

Query: 318 EDVIVQDELYVNGGQVLPHKSIGSSLHM 345
            +  +      +  +V     I      
Sbjct: 171 GNATITHAFIEHRAEVFDFALIEGDKDN 198

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 11/97 (11%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
           +  TA I P   I   V IG   VI  GV +     L +             +     VG
Sbjct: 3   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHN----------NVTLQGHTFVG 52

Query: 283 QWVRMENITVLGE-CIIGWKCVVGQWVRMENITVLGE 318
           +   +    VLG              + +    ++ E
Sbjct: 53  KNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIRE 89

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDA--IVKSHSWLEGCIIGW 277
             ++ P A I  G  IG    IG GV ++ GV +  +  L+    + K+       ++G 
Sbjct: 6   TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGT 65

Query: 278 KCVVGQWVRMENITVLG 294
           +    ++    +  ++G
Sbjct: 66  QPQDLKYKGEYSELIIG 82

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.6 bits (117), Expect = 8e-08
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 4/129 (3%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
              + P+A +     +  +V +     +     ++           S+       +    
Sbjct: 10  KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQ---DNVSIHT 66

Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKS 338
             G    +     +G   +     VG +V +   +V+ +   + D + +  G  V P+K 
Sbjct: 67  SHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKE 126

Query: 339 IGSSLHMLG 347
           I     +LG
Sbjct: 127 IPDYSLVLG 135

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGG----VCIKRSTILRDAIVKSHSWLEGCII 275
              +DP A++     IG NV + P   I       + +   + ++D +V          I
Sbjct: 28  TAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHA----LETI 83

Query: 276 GWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335
             +    +   +E         IG    +    ++     +G+D  +  + +V   +V  
Sbjct: 84  NEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN 143

Query: 336 HKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPE 375
           +  +      +G  V + D  Y+  G V+  ++    +PE
Sbjct: 144 NCVLEPRSAAIG--VTIPDGRYIPAGMVVTSQAEADKLPE 181

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 5/143 (3%)

Query: 234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL 293
            I P   I P   + G V I  + ++               +G +  V   V +  +  +
Sbjct: 24  VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETI 83

Query: 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV--- 350
            E     +  + +    E    +G +V +  +  V+G   +   +       + +     
Sbjct: 84  NEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN 143

Query: 351 --IVQDELYVNGGQVLPHKSIGS 371
             +++      G  +   + I +
Sbjct: 144 NCVLEPRSAAIGVTIPDGRYIPA 166

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 14/136 (10%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 217 IVGNVLVDPTATIGPGCRI----GPNVTIGPGVVIEGGVCIKRSTILR-DAIVKSHSWLE 271
           ++G V +     + P   I    G  + +G    ++ GV +     +  +      + +E
Sbjct: 37  VIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVE 96

Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
                +   +G  V + + + +                    + +G + +++      G 
Sbjct: 97  VDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGV 156

Query: 332 QVLPHKSIGSSLHMLG 347
            +   + I + + +  
Sbjct: 157 TIPDGRYIPAGMVVTS 172

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 1/144 (0%)

Query: 222 LVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
           L DP    +      G +V I   V+IEG V +     +    V  +S +          
Sbjct: 3   LRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYT 62

Query: 281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIG 340
           V +   +     +G                    V  +   +           L    IG
Sbjct: 63  VVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIG 122

Query: 341 SSLHMLGEDVIVQDELYVNGGQVL 364
            ++++    +    +       ++
Sbjct: 123 DNVNIGAGTITCNYDGANKFKTII 146

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 1/158 (0%)

Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
           + G +       I     I  NVT+G  V I  G  IK S I  D  +  ++ +E   + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH 336
             C +G + R+     L E       V  +  R+   +  G    + D    +   +   
Sbjct: 71  AACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAG 130

Query: 337 KSIGSSLHMLGEDVIVQDELYVN-GGQVLPHKSIGSSV 373
               +         I+ D+++V    Q++   ++G   
Sbjct: 131 TITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGA 168

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 14/113 (12%), Positives = 31/113 (27%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
              +  T T G    I  NV I   V +   V I    +++++++     +    +    
Sbjct: 8   RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDA 67

Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ 332
            +     +     L       +              LG+        Y+   +
Sbjct: 68  NLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAE 120

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 17/160 (10%), Positives = 47/160 (29%), Gaps = 6/160 (3%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
              +D    I    +I  NVT+     I     +   T + D+ + + + +   +I    
Sbjct: 8   ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESS 67

Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSI 339
           V    +      +     +G +  +G +V ++  ++             N          
Sbjct: 68  VADGVIVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFG 127

Query: 340 GSSLHMLGEDVIVQDELYVNGGQ------VLPHKSIGSSV 373
             ++ +  +       +  N         ++    +G + 
Sbjct: 128 AGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNS 167

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 215 DGIVG-NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL--- 270
              V    +VD  AT+G   +IG NV +  GV I G +           I++ + ++   
Sbjct: 131 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL---EPLQANPTIIEDNCFIGAR 187

Query: 271 ----EGCIIGWKCVVG 282
               EG I+    V+ 
Sbjct: 188 SEVVEGVIVEEGSVIS 203

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVG 282
           D       G R+ P  T+  G  I     +  S +   A V   + ++    +G    +G
Sbjct: 94  DEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIG 153

Query: 283 QWVRM-ENITVLGE--------CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
           + V +   + + G          II   C +G    +    ++ E  ++   +Y+   
Sbjct: 154 KNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQS 211

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 225 PTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQW 284
           P + +     +  +  IG G VI+    I  S +   + +   + +E  ++         
Sbjct: 3   PPSKML-DADVT-DSVIGEGCVIKNCK-IHHSVVGLRSCISEGAIIEDSLLMGADYYETD 59

Query: 285 VRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLH 344
              + +             +G+   ++   +     I  +   +N   V           
Sbjct: 60  ADRKLLAA----KGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYF 115

Query: 345 MLGEDVIVQDELYVNGGQV 363
           +    V V  +  +  G +
Sbjct: 116 IKSGIVTVIKDALIPSGII 134

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 32/155 (20%)

Query: 190 RDFLKGMCLYLNSLR----QKRPKLLKEGDGIVGNVLVDPT--------------ATIGP 231
           R   + +    N         R ++L +  G V    ++PT                   
Sbjct: 24  RLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANF 83

Query: 232 GC--------RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283
            C        RIG N  + PGV I                       +   IG    +G 
Sbjct: 84  DCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVA----RNSGAELGKPVTIGNNVWIGG 139

Query: 284 WVRMENITVLGE-CIIGWKCVVGQWVRMENITVLG 317
              +     +G+  ++    VV + V  +N+ V G
Sbjct: 140 RAVINPGVTIGDNVVVASGAVVTKDV-PDNVVVGG 173

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 4/124 (3%)

Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGV----CIKRSTILRDAIVKSHSWLEGCIIGW 277
             +    I     I   VTI   V +               +   I+     ++      
Sbjct: 8   YKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLH 67

Query: 278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK 337
           +      +  +++TV  + I+    +    +      +L    I +      G  V   K
Sbjct: 68  QSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGK 127

Query: 338 SIGS 341
            I  
Sbjct: 128 KIPP 131

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 4/106 (3%)

Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
              + P         IG   +IG G                +               +  
Sbjct: 42  ARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQ---GHRAEWASTFPFHFMHEEPAFAG 98

Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRM-ENITVLGEDVIVQD 324
            V  +    +  +  E  IG + +    VR+     +    ++  D
Sbjct: 99  AVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD 144

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 28/205 (13%)

Query: 1   MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
           ++ +QIE L E G+ ++I+ V Y  EQ +                  +            
Sbjct: 36  LIEYQIEFLKEKGINDIIIIVGYLKEQFDY--------------LKEKYGVRLVFNDKYA 81

Query: 61  AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
             +           L +  + D       +  +N     T      E+ +    ++Y + 
Sbjct: 82  DYNNFYSLYLVKEELANSYVIDADNYLFKNMFRNDLTRSTYFSVYREDCTNEWFLVYGDD 141

Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEIFPL--------MSK 170
             ++  I   +     +I +G+  ++    ++I   I    +  E   L          K
Sbjct: 142 YKVQDIIVDSKA---GRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIK 198

Query: 171 EKQLYAMEL-KGFWMDVGQPRDFLK 194
           E  +Y  EL      ++   +D+ K
Sbjct: 199 ELDVYVEELEGNSIYEIDSVQDYRK 223

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 37.9 bits (87), Expect = 9e-04
 Identities = 12/124 (9%), Positives = 29/124 (23%), Gaps = 3/124 (2%)

Query: 208 PKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI--KRSTILRDAIVK 265
           P  +   +G      + P         +G                I      +     + 
Sbjct: 5   PMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIG 64

Query: 266 SHSWL-EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQD 324
               +  G  I       +         L              + ++  T++G DV +  
Sbjct: 65  KFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGK 124

Query: 325 ELYV 328
           ++ +
Sbjct: 125 DVVI 128

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 21/142 (14%)

Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK--RSTILRDAIVKSHSWL-EGCIIGWKC 279
                 I P      NV +G     +        +  +    I+     + + C IG   
Sbjct: 14  NKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGV 73

Query: 280 VVGQW---VRMENITVLGECIIGW---------------KCVVGQWVRMENITVLGEDVI 321
            +       RM+  T                          ++G  V +    V+   V 
Sbjct: 74  TIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVK 133

Query: 322 VQDELYVNGGQVLPHKSIGSSL 343
           + D   V    V+        L
Sbjct: 134 IGDGAIVAANSVVVKDIAPYML 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.97
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.96
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.92
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.91
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.9
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.89
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.86
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.81
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.79
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.78
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.75
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.74
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.74
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.7
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.7
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.68
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.68
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.67
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.67
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.66
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.65
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.64
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.63
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.61
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.6
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.58
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.57
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.57
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.53
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.5
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.49
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.46
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.44
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.44
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.42
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.42
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.39
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.37
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.32
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.3
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.16
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.11
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.04
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	98.31
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	98.19
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	98.01
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	97.19
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	97.13
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	97.0
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	96.97
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	96.85
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	96.82
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	94.04
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	91.72
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	91.56
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	88.64
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	85.43
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	84.49

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.5e-29  Score=221.56  Aligned_cols=196  Identities=21%  Similarity=0.358  Sum_probs=171.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCc-EEEEeCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVS-YRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEP-FFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~-~lv~~gD   78 (380)
                      ||+|+|++|.++|+++|+++++ ++.+.+++++.+ ++++++++.|..|++++||++|++.|+++++  +++ |+++++|
T Consensus        34 iI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~-~~~~g~~I~y~~q~~~~Gta~ai~~a~~~i~--~~~~~lil~dD  110 (292)
T d1fxoa_          34 MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAVQPSPDGLAQAFLIGESFIG--NDLSALVLGDN  110 (292)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEECSSCCCGGGHHHHTHHHHT--TSEEEEEETTE
T ss_pred             hHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcc-ccccCeEEEEccCCCCCcHHHHHHhhhhhcC--CCceEEEEccc
Confidence            7999999999999999988776 567889999877 6778999999999999999999999999995  444 6778889


Q ss_pred             cccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164          79 IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT  158 (380)
Q Consensus        79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~  158 (380)
                      ++++.|+.+++++|.++++.+|+++.++++|++||++..|++++++.|.|||.++.++++.+|+|+|++++++.+..-..
T Consensus       111 ~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~~ki~~~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~  190 (292)
T d1fxoa_         111 LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKP  190 (292)
T ss_dssp             EEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCC
T ss_pred             cccCcCHHHHHHHHHhCCCCcEEEEEECCCHHHCeEEEEcCCCCEeEEEECCCCCCCCcEEEEEEEEChHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887743322


Q ss_pred             C-----cccchhhhhhcCCcEEEEEec--cEEEecCChhhHHHHHHHH
Q psy9164         159 S-----IEKEIFPLMSKEKQLYAMELK--GFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       159 ~-----~~~~il~~l~~~~~i~~~~~~--~~~~~i~~~~~~~~a~~~~  199 (380)
                      +     ...|+++.+++++++..+.+.  .+|.|+||++++++|+...
T Consensus       191 s~rgE~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v  238 (292)
T d1fxoa_         191 SPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFI  238 (292)
T ss_dssp             CTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHH
Confidence            2     224678888999888777764  3699999999999997543

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.8e-28  Score=212.85  Aligned_cols=195  Identities=23%  Similarity=0.386  Sum_probs=168.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCc-EEEEeCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEP-FFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~-~lv~~gD   78 (380)
                      ||+|+|++|.++|+++|+++++++. +.+++++.+ ++++++++.|..|++++|||+|+..++++++  +++ ||++++|
T Consensus        34 ~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~-g~~~gi~I~y~~Q~~plGta~Ai~~a~~fi~--~~~~~lvlgdd  110 (291)
T d1mc3a_          34 MIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAEQPSPDGLAQAFIIGETFLN--GEPSCLVLGDN  110 (291)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEECSSCCCSTHHHHHTHHHHT--TSCEEEEETTE
T ss_pred             hHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCc-hHhhCcEEEEEECCCCCchHHHHHHHHHHhC--CCCeEEEECCC
Confidence            7999999999999999999999865 566777766 6788999999999999999999999999995  455 5666777


Q ss_pred             cccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164          79 IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT  158 (380)
Q Consensus        79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~  158 (380)
                      ++++.++..+++.|.++.+.+|+++.++++|.+||++.+|+++++..|.|||..+.++++.+|+|+|++++++.++.-..
T Consensus       111 i~~~~~~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~g~i~~i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~  190 (291)
T d1mc3a_         111 IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKP  190 (291)
T ss_dssp             EEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCC
T ss_pred             cccCcCHHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccCcceeEEEECCCCCCCCeEEEEEEEeChHHHHHHhcCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988854332


Q ss_pred             Ccc-----cchhhhhhcCCcEEEEEec-c-EEEecCChhhHHHHHHH
Q psy9164         159 SIE-----KEIFPLMSKEKQLYAMELK-G-FWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       159 ~~~-----~~il~~l~~~~~i~~~~~~-~-~~~~i~~~~~~~~a~~~  198 (380)
                      +-+     .++++.+++++....+.+. + +|.|+||++++.+|+..
T Consensus       191 s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~  237 (291)
T d1mc3a_         191 SERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTF  237 (291)
T ss_dssp             CSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHH
T ss_pred             CCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHH
Confidence            222     2567777888876666553 3 59999999999999754

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.92  E-value=7.7e-25  Score=189.81  Aligned_cols=161  Identities=21%  Similarity=0.282  Sum_probs=107.0

Q ss_pred             CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-------ceEEccCCEECCCcEe-------------cC
Q psy9164         213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-------RSTILRDAIVKSHSWL-------------EG  272 (380)
Q Consensus       213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~i-------------~~  272 (380)
                      +.+.|+++++|+++++||+++.|+++++|+++|.||++|.|+       ++.+++++.+.+++.+             ..
T Consensus         4 ~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~   83 (262)
T d2jf2a1           4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTR   83 (262)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCce
Confidence            344455555555555555555555555555544444444443       3444444444444443             13


Q ss_pred             eEEcCCCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeecce
Q psy9164         273 CIIGWKCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGED  349 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~  349 (380)
                      +.||+++.|+++|+++..+..+  .+.||+++.++.++.|.+++.||+++++.+++.++..+.+.+ .+||.+ +.+.++
T Consensus        84 v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~-~~i~~~  162 (262)
T d2jf2a1          84 VEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGM-TAVHQF  162 (262)
T ss_dssp             EEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT-CEECTT
T ss_pred             EEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccC-ceeccc
Confidence            6899999999999997655432  367788877777777777777777777777777766555444 344444 445788


Q ss_pred             eEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         350 VIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       350 v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++||++++||++|+     |+||+||++++
T Consensus       163 v~IG~~a~igagS~-----Vtkdvp~~~~~  187 (262)
T d2jf2a1         163 CIIGAHVMVGGCSG-----VAQDVPPYVIA  187 (262)
T ss_dssp             CEECTTCEECSSCE-----ECSBBCTTEEE
T ss_pred             cEeehhceeeccce-----EeecCCccccc
Confidence            99999999999999     99999999875

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.91  E-value=1.1e-23  Score=182.57  Aligned_cols=163  Identities=18%  Similarity=0.282  Sum_probs=119.2

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEe-------------cCeEEc
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-------------EGCIIG  276 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~ig  276 (380)
                      +++.+.|++++.|++++.||++|.|++++.||++|+|+++|.|. ++.||+++.+.+++.|             ....+|
T Consensus         3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig   82 (259)
T d1j2za_           3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   82 (259)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence            45556666666666666666666666666667777777777665 6777777777777766             235778


Q ss_pred             CCCEECCceEEeeeeEe--cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEec
Q psy9164         277 WKCVVGQWVRMENITVL--GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       277 ~~~~ig~~~~i~~~~~~--~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~  353 (380)
                      +++.+++++.+...+..  +.+.+|+++.++.++.+..++.+|+++.+..++.+...+.+.+. +||.+ +.+.++++||
T Consensus        83 ~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~-s~I~~gv~IG  161 (259)
T d1j2za_          83 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGL-TAIHQFVRIA  161 (259)
T ss_dssp             SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTT-CEECTTCEEC
T ss_pred             cccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecce-eeeecccEec
Confidence            88888888887654443  35778888888888888777777777777777777766655553 45555 4557889999


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||++|+     |+||+||++++
T Consensus       162 ~~a~IgagSv-----V~kdVp~~~i~  182 (259)
T d1j2za_         162 KGCMIAGKSA-----LGKDVPPYCTV  182 (259)
T ss_dssp             TTCEECTTCE-----ECSBBCTTEEE
T ss_pred             cceeeeeeee-----eccccccceeE
Confidence            9999999999     99999999876

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.90  E-value=1e-22  Score=181.83  Aligned_cols=203  Identities=15%  Similarity=0.303  Sum_probs=164.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc-------ccCCcEEEEeecC------CCCCCchHHHHhHHhhCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET-------KKLGISLVFSHEN------EPLGTAGPLALAKDILNK   67 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~-------~~~~~~i~~~~~~------~~~gt~~al~~a~~~i~~   67 (380)
                      ||+|+|++|.++|+++|+|+++++.+++.+|+.+..       +..+....+..+.      ...|++++++.++.++.+
T Consensus        45 lI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~  124 (307)
T d1yp2a2          45 LIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEE  124 (307)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTT
T ss_pred             HHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccccccceeeceeeeccccccccchhHHHHHhHHhhhc
Confidence            799999999999999999999999999999986621       1223344443332      346999999999999853


Q ss_pred             -CCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECCCCceeEEEeCCCCC-----------
Q psy9164          68 -SQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNEHGCIESFIEKPQEF-----------  133 (380)
Q Consensus        68 -~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~~~~v~~~~ek~~~~-----------  133 (380)
                       ..++|++++||.+++.++..+++.|+.+++.+++++....  ++..||++.+|+++++..|.|||...           
T Consensus       125 ~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~  204 (307)
T d1yp2a2         125 HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTI  204 (307)
T ss_dssp             SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGG
T ss_pred             cccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccccccccceEEECCCCcEEEEEECCCCcccccccccccc
Confidence             2467999999999999999999999999998888776654  35689999999999999999997521           


Q ss_pred             ----------CCCeEEEEEEEeCHhHHhhcc----CCCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHH
Q psy9164         134 ----------VSNKINAGMYIFNPSVLDRIE----IKPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       134 ----------~~~~~~~giyi~~~~~l~~l~----~~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~  198 (380)
                                ...+.++|+|+|++++|..+.    ....++..++++.+++++ ++++++++++|.|+|||++|.+|+..
T Consensus       205 ~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~  284 (307)
T d1yp2a2         205 LGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLG  284 (307)
T ss_dssp             GSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHG
T ss_pred             cccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHH
Confidence                      235789999999999986552    233456778898888776 79999999999999999999999877


Q ss_pred             HHhhh
Q psy9164         199 YLNSL  203 (380)
Q Consensus       199 ~l~~~  203 (380)
                      ++...
T Consensus       285 ll~~~  289 (307)
T d1yp2a2         285 ITKKP  289 (307)
T ss_dssp             GGCSS
T ss_pred             HhcCC
Confidence            76544

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=3.6e-22  Score=176.64  Aligned_cols=196  Identities=20%  Similarity=0.362  Sum_probs=163.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCc-EEEEeCC
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEP-FFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~-~lv~~gD   78 (380)
                      ||+|+|+.|..+|+++++|+++++. +.+++++.+ .+.+++++.++.|++++||++|++.|++++.  +++ ++++++|
T Consensus        36 ii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~-~~~~~~~i~~v~e~~~~gta~Al~~a~~~l~--~~~~~li~~~d  112 (295)
T d1lvwa_          36 MIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRVQEEPRGIADAFIVGKDFIG--DSKVALVLGDN  112 (295)
T ss_dssp             TTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEECSSCCCGGGHHHHTHHHHT--TSCEEEEETTC
T ss_pred             HHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhcc-chhcCCEEEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeCCc
Confidence            7999999999999999999999864 677777766 4567889999999999999999999999994  333 6777888


Q ss_pred             cccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164          79 IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT  158 (380)
Q Consensus        79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~  158 (380)
                      ++.+.++..+++.|.+.+..+|+++.+.++|.+||++..+++++|..|.|||..+.++++++|+|+|++++|..+.....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~~~v~~~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~  192 (295)
T d1lvwa_         113 VFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEP  192 (295)
T ss_dssp             CEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCC
T ss_pred             ceechhHHHHHHHHHhCCCCeEEEEEEcCCCccccEEEECCCCcEEEEeecccCcccceeecceEEECHHHHHHHHhcCC
Confidence            89999999999999999999999999999999999999999999999999999888999999999999999977643211


Q ss_pred             C-----cccchhhhhhcCCc--EEEEEeccEEEecCChhhHHHHHHHH
Q psy9164         159 S-----IEKEIFPLMSKEKQ--LYAMELKGFWMDVGQPRDFLKGMCLY  199 (380)
Q Consensus       159 ~-----~~~~il~~l~~~~~--i~~~~~~~~~~~i~~~~~~~~a~~~~  199 (380)
                      +     ...++++.++..+.  .+.+....+|.|+|++.++.++...+
T Consensus       193 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i  240 (295)
T d1lvwa_         193 SDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI  240 (295)
T ss_dssp             CTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred             CcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence            1     12345666666664  45555677899999999998886543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.86  E-value=4.6e-21  Score=159.51  Aligned_cols=157  Identities=20%  Similarity=0.257  Sum_probs=97.2

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee------
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN------  289 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~------  289 (380)
                      .|.+++.|+++++|++++.|++++.||++|+|++++.|.++.||+++.|... .+....+++++.||+++.+..      
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~-~i~~~~~g~~~~Ig~~~~i~~~~~i~~   88 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNS-MIEESSVADGVIVGPYAHIRPNSSLGA   88 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECSC-EEESCEECTTCEECSSCEECSSCEECT
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCcccccc-ceeeccccCcceeecceeccccccccc
Confidence            4777777788888888888888888888888888888888888888887643 344445555555555555532      


Q ss_pred             ------eeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCe-------ee-cceeecCcceeecceeEecCc
Q psy9164         290 ------ITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ-------VL-PHKSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       290 ------~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-------v~-~~~~i~~~~~~~~~~v~i~~~  355 (380)
                            ........++..+.++..+.+.. ..++.++.+++++......       ++ .+.+||.+ +.+.++++||++
T Consensus        89 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~-~~I~~gv~IG~~  166 (196)
T d1g97a1          89 QVHIGNFVEVKGSSIGENTKAGHLTYIGN-CEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSN-STIIAPVELGDN  166 (196)
T ss_dssp             TCEEEEEEEEESCEECTTCEEEEEEEEES-EEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTT-CEEESSCEECTT
T ss_pred             ceeecccccceeeecCcceEecceEEecc-eeecceeecCCCeEEeecceeeeeeeEEecCCEEeee-eEEcCCcEECCC
Confidence                  22223334444444444444433 2233333433333332211       11 11223333 334678999999


Q ss_pred             eEEeceeeeccccccCCCCCCCccC
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      ++||++|+     |+||+||+++++
T Consensus       167 s~Igagsv-----Vtkdvp~~~i~~  186 (196)
T d1g97a1         167 SLVGAGST-----ITKDVPADAIAI  186 (196)
T ss_dssp             CEECTTCE-----ECSCBCTTCEEC
T ss_pred             CEECCCCE-----ECcCcCCCCEEE
Confidence            99999999     999999999874

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.8e-19  Score=148.29  Aligned_cols=157  Identities=20%  Similarity=0.260  Sum_probs=115.2

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee------
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN------  289 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~------  289 (380)
                      .|++.+.|+++++|+++|.|++++.||++|+|+++|.|.+..++.++.+...+...++.++.++.+++++.+..      
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~   89 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLE   89 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECT
T ss_pred             EECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeee
Confidence            57888999999999999999999999999999999999988888888887777777777777777777666632      


Q ss_pred             ------eeEecceEECccceeCcceEEccceEECCCeEECcceEEcCC-------e-eecceeecCcceeecceeEecCc
Q psy9164         290 ------ITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG-------Q-VLPHKSIGSSLHMLGEDVIVQDE  355 (380)
Q Consensus       290 ------~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~-------~-v~~~~~i~~~~~~~~~~v~i~~~  355 (380)
                            ....+.+.+|+++.+++.+.+. ++.+++++.+++++.....       + +..+.+||.++ .+.++++||++
T Consensus        90 ~~~i~~~~~~~~~~ig~~~~i~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~-~I~~~v~IG~~  167 (201)
T d2oi6a1          90 GAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT-QLVAPVTVGKG  167 (201)
T ss_dssp             TCEEEEEEEEEEEEECTTCEEEEEEEEE-EEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTC-EEESSEEECTT
T ss_pred             eeeecceeeeeeeeeCCCeEEceeeeec-ccCcCccccccCceeEeecccccccccEeCCcEEEeEee-eEcCCcEECCC
Confidence                  2333456666666666665554 3556666666666544331       1 12223444444 34667999999


Q ss_pred             eEEeceeeeccccccCCCCCCCcc
Q psy9164         356 LYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       356 ~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++||++|+     |+||+||++++
T Consensus       168 s~Igagsv-----V~kdVp~~si~  186 (201)
T d2oi6a1         168 ATIAAGTT-----VTRNVGENALA  186 (201)
T ss_dssp             CEECTTCE-----ECSCBCTTCEE
T ss_pred             CEECCCCE-----EeeecCCCCEE
Confidence            99999999     99999999985

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.79  E-value=1.3e-18  Score=150.18  Aligned_cols=143  Identities=22%  Similarity=0.267  Sum_probs=99.1

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeE---
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITV---  292 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~---  292 (380)
                      |+++++|+|+|.|++++.|++++.||++|.|++++.|     |++|.|++++.|. ++.+++++.+.+++.+.....   
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~I-----g~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~   76 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEI-----GEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLK   76 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE-----CTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTT
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE-----CCCCEEeCCEEEcCCccccccceeeeecccceeecccc
Confidence            5677777777777777777777777777777766665     5555555555553 477788888877777754322   


Q ss_pred             ----ecceEECccceeCcceEEccc-------eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEece
Q psy9164         293 ----LGECIIGWKCVVGQWVRMENI-------TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGG  361 (380)
Q Consensus       293 ----~~~~~ig~~~~ig~~~~i~~~-------~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~  361 (380)
                          .+.+.||+++.|++++.+..+       +.||+++.+.+++.|+.++.++..++-.+.+.++++++||+++++|++
T Consensus        77 ~~~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~  156 (262)
T d2jf2a1          77 YAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGM  156 (262)
T ss_dssp             CCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred             ccccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccC
Confidence                235788888888888888543       667777777777777776666655544455666777888888888877


Q ss_pred             eee
Q psy9164         362 QVL  364 (380)
Q Consensus       362 ~v~  364 (380)
                      +.+
T Consensus       157 ~~i  159 (262)
T d2jf2a1         157 TAV  159 (262)
T ss_dssp             CEE
T ss_pred             cee
Confidence            764

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.78  E-value=1.5e-17  Score=143.96  Aligned_cols=196  Identities=26%  Similarity=0.446  Sum_probs=159.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc--------------------ccCCcEEEEeecCCCCCCchHHHH
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET--------------------KKLGISLVFSHENEPLGTAGPLAL   60 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~--------------------~~~~~~i~~~~~~~~~gt~~al~~   60 (380)
                      ||+|+|+.|.++|+++|+++++|+++++++++.+..                    ......+.+..+....++.+++..
T Consensus        35 lI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (259)
T d1tzfa_          35 ILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKR  114 (259)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchhccccchhhhccccccceeEEeccccccccchhhh
Confidence            699999999999999999999999999999996521                    111234556777888999999999


Q ss_pred             hHHhhCCCCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEE
Q psy9164          61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA  140 (380)
Q Consensus        61 a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~  140 (380)
                      +.+... .+++|+++++|.+++.++..+++.|.......+....  .++..++.... ...++..+.+.+ .....+.++
T Consensus       115 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~~~~  189 (259)
T d1tzfa_         115 VAEYVK-DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT--FPPGRFGALDI-QAGQVRSFQEKP-KGDGAMING  189 (259)
T ss_dssp             TGGGTT-TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE--CCCCCSEEEEE-ETTEEEEEEESC-SCCSCCEEC
T ss_pred             hhhhcc-CCCceEEeccccccccchhhhhhhhcccccceeeccc--cccccCCceec-ccceEEeeeecc-ccceeeecc
Confidence            988873 3567999999999999999999999998877776554  34455665554 345566565554 345678999


Q ss_pred             EEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164         141 GMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLN  201 (380)
Q Consensus       141 giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~  201 (380)
                      |+|++++++++.+.....+++.++++.|+++++++++..+++|.+++|++++..++..+..
T Consensus       190 G~y~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~  250 (259)
T d1tzfa_         190 GFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             CCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred             eeccccchhhhhcccCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHc
Confidence            9999999999999888888888999999999999999999999999999999887766654

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.75  E-value=6.9e-18  Score=145.72  Aligned_cols=37  Identities=35%  Similarity=0.637  Sum_probs=15.7

Q ss_pred             cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEE
Q psy9164         217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI  253 (380)
Q Consensus       217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  253 (380)
                      |+++++|+|+|+|++++.|+++++|++++.|+++|.|
T Consensus         3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I   39 (259)
T d1j2za_           3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKL   39 (259)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            3444444444444444444444444444444444333

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.5e-18  Score=141.48  Aligned_cols=79  Identities=11%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164         273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV  352 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i  352 (380)
                      +.||++|.|+++++|...     ....+......+..+...+.||++||||.++.|                  .++++|
T Consensus        95 i~IG~~v~Ig~~v~I~~~-----~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I------------------~~Gv~I  151 (200)
T d1krra_          95 VTIGDNVLIAPNVTLSVT-----GHPVHHELRKNGEMYSFPITIGNNVWIGSHVVI------------------NPGVTI  151 (200)
T ss_dssp             EEECSSCEECSSCEEESE-----ECCSSTTTCTTCCBEECCEEECTTCEECTTCEE------------------CTTCEE
T ss_pred             cEeCCCccccceeEEecc-----cccceecccccceeecceEEEccCcccceeeec------------------cccccc
Confidence            467777777777777432     222333444444555566778888888888877                  567778


Q ss_pred             cCceEEeceeeeccccccCCCCCCCcc
Q psy9164         353 QDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      |++++||+||+     |++|+|+++++
T Consensus       152 G~~~vIgagSv-----V~kdvp~~~iv  173 (200)
T d1krra_         152 GDNSVIGAGSI-----VTKDIPPNVVA  173 (200)
T ss_dssp             CTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             CCCcEEeCCCE-----EeeEcCCCcEE
Confidence            89999999998     88888888876

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.74  E-value=1e-17  Score=139.73  Aligned_cols=141  Identities=19%  Similarity=0.174  Sum_probs=71.1

Q ss_pred             eeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-----ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecc
Q psy9164         222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGE  295 (380)
Q Consensus       222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~  295 (380)
                      .|+|+++|++++.|..++.||++|.|+++|.|+     +..||++|.|++++.|+. ..++...................
T Consensus        24 ~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (210)
T d1qrea_          24 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYA  103 (210)
T ss_dssp             EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEES
T ss_pred             ccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccc
Confidence            455555555555555556666666666666663     456777777777666632 22222222222222222222234


Q ss_pred             eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeee
Q psy9164         296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVL  364 (380)
Q Consensus       296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~  364 (380)
                      +.||++++||+++.+..++.||++++||.+++|..+.+..+..|+.++.+  .+.+|++++.|.+++++
T Consensus       104 ~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv--~g~~i~~g~~I~~g~~v  170 (210)
T d1qrea_         104 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA--IGVTIPDGRYIPAGMVV  170 (210)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEE--ESCEECTTBEECTTCEE
T ss_pred             eeeccccccccccccccCCcccCCcEeeCCccccccccccCcEEecCcEe--cCcEeCCCcEECCCcEE
Confidence            55666666666666655556666666555555544333333333333222  23445555555555554

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.70  E-value=6.2e-17  Score=132.97  Aligned_cols=110  Identities=20%  Similarity=0.356  Sum_probs=62.0

Q ss_pred             eeeCCCCEECCCcEEC--CCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEE
Q psy9164         221 VLVDPTATIGPGCRIG--PNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII  298 (380)
Q Consensus       221 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~i  298 (380)
                      .+|+|++.|++++.|+  +++.|+++|.|++++.|     |++|.|+.++     .|++++.||++|.+           
T Consensus        75 ~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~I-----g~~~~I~~~~-----~I~~~~~Ig~~~~i-----------  133 (193)
T d3bswa1          75 NLIHKSALISPSAIVEENAGILIMPYVVINAKAKI-----EKGVILNTSS-----VIEHECVIGEFSHV-----------  133 (193)
T ss_dssp             CEECTTCEECTTSEECTTSCCEECTTCEECTTCEE-----CTTCEECTTC-----EECTTCEECTTCEE-----------
T ss_pred             eecCCCcEEeeeeEEccccCceEeeeeeecCCcee-----eecccccccc-----ccceeeeccccccc-----------
Confidence            4566666666666663  34555555555554443     3444333322     22223323222222           


Q ss_pred             CccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCc
Q psy9164         299 GWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQI  378 (380)
Q Consensus       299 g~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~i  378 (380)
                            ++++.+...+.||++++||.++.|                  .++++||++++||+||+     |++|+|++++
T Consensus       134 ------~~~~~i~g~v~Ig~~~~IG~~s~I------------------~~~v~Ig~~~~Igagsv-----V~~dv~~~~~  184 (193)
T d3bswa1         134 ------SVGAKCAGNVKIGKNCFLGINSCV------------------LPNLSLADDSILGGGAT-----LVKNQDEKGV  184 (193)
T ss_dssp             ------CTTCEECTTCEECTTCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBCSCCE
T ss_pred             ------cccccccccceeeccccCCceeeE------------------cCCeEECCCCEECCCCE-----ECcCCCCCcE
Confidence                  333333444556666666666666                  55667888888888888     8888888877


Q ss_pred             cC
Q psy9164         379 IM  380 (380)
Q Consensus       379 v~  380 (380)
                      ++
T Consensus       185 ~~  186 (193)
T d3bswa1         185 FV  186 (193)
T ss_dssp             EC
T ss_pred             EE
Confidence            63

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=1.9e-16  Score=128.07  Aligned_cols=121  Identities=19%  Similarity=0.174  Sum_probs=83.2

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecC-----eEEcCCCEECCceEEeee
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEG-----CIIGWKCVVGQWVRMENI  290 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~i~~~  290 (380)
                      .+.|+++++|+++++|.+++.||++|.|+++|.|.    .+.||+++.+++++.+..     +.+++++.++.++.+   
T Consensus        12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~---   88 (172)
T d1xhda_          12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL---   88 (172)
T ss_dssp             CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE---
T ss_pred             CCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecc---
Confidence            34666677777777777777777777777777775    468999999999888843     577777777777766   


Q ss_pred             eEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         291 TVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       291 ~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                         .++.+++++++|.++.+.+++.||++++||+++.|.     +++.|++++++.|.|++
T Consensus        89 ---~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~-----~~~~i~~~~v~~G~Pak  141 (172)
T d1xhda_          89 ---HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVS-----QGKKIPPNTLAFGRPAK  141 (172)
T ss_dssp             ---ESCEECTTCEECTTCEECTTCEECTTCEECTTCEEC-----TTCEECTTEEEEETTEE
T ss_pred             ---cccccccceEEecccEeeCCcEEcCcccccceEEEe-----eCeEECCCeEEEecCcE
Confidence               667778888888776666666666666655555552     22455556556555544

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.7e-17  Score=134.46  Aligned_cols=78  Identities=17%  Similarity=0.263  Sum_probs=60.6

Q ss_pred             EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164         274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ  353 (380)
Q Consensus       274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~  353 (380)
                      .||++|.|+++|.|..     .+.+++......++.+...++||+++|||.++.|                  .++|+||
T Consensus        94 ~IG~~~~Ig~~v~I~~-----~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I------------------~~Gv~IG  150 (182)
T d1ocxa_          94 RIGDNCMLAPGVHIYT-----ATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVI------------------NPGVTIG  150 (182)
T ss_dssp             EECTTCEECTTCEEEC-----EECCSSHHHHTTTCBEECCEEECTTCEECTTCEE------------------CTTCEEC
T ss_pred             EECCCeEECcCceEee-----cccccceeeeeccceEcceeEECceEeeCceeec------------------cCcEEEC
Confidence            5677777777777743     3334555566666666777888888888888888                  6778899


Q ss_pred             CceEEeceeeeccccccCCCCCCCcc
Q psy9164         354 DELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       354 ~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ++++||+||+     |++|+|+++++
T Consensus       151 ~~~vIgagsv-----V~kdvp~~~i~  171 (182)
T d1ocxa_         151 DNVVVASGAV-----VTKDVPDNVVV  171 (182)
T ss_dssp             TTCEECTTCE-----ECSCBCSSEEE
T ss_pred             CCCEECCCCE-----EccCCCCCeEE
Confidence            9999999999     99999999886

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.68  E-value=1.4e-16  Score=128.81  Aligned_cols=115  Identities=13%  Similarity=0.194  Sum_probs=82.6

Q ss_pred             EECCCCEEcCCcEEe-ceEEccCCEECCCcEec----CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccce
Q psy9164         240 TIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENIT  314 (380)
Q Consensus       240 ~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~  314 (380)
                      .||++|.|++++.|. ++.||++|.|+++|.|.    ...||+++.+++++.++... ...+.+|+++.++..+.+.+ +
T Consensus        14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~-~~~~~ig~~~~~~~~~~~~~-~   91 (172)
T d1xhda_          14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSP-QYPLILEDDVTVGHQVILHS-C   91 (172)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCT-TCCEEECTTCEECTTCEEES-C
T ss_pred             EECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCC-cCCeeeeeeeeeeeeecccc-c
Confidence            344444444444443 45566666666666663    36899999999999986532 23578888888888888765 6


Q ss_pred             EECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeecccccc--CCCCCCCcc
Q psy9164         315 VLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIG--SSVPEPQII  379 (380)
Q Consensus       315 ~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~--~~vp~~~iv  379 (380)
                      .|++++++|.++.|                  +++++||++++||++|+     |+  +++|+++++
T Consensus        92 ~i~~~~~ig~~~~i------------------~~gv~IG~~~~Igagsv-----V~~~~~i~~~~v~  135 (172)
T d1xhda_          92 HIKKDALIGMGSII------------------LDGAEIGEGAFIGAGSL-----VSQGKKIPPNTLA  135 (172)
T ss_dssp             EECTTCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECTTCEECTTEEE
T ss_pred             ccccceEEecccEe------------------eCCcEEcCcccccceEE-----EeeCeEECCCeEE
Confidence            78899998888888                  56677888888888888     65  567888765

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.67  E-value=2.1e-16  Score=131.61  Aligned_cols=130  Identities=15%  Similarity=0.224  Sum_probs=97.6

Q ss_pred             CCCccccceeeCCCCEECCCcEECCCcEECCCCEE----cCCcEEe-ceEEccCCEECCCcE------------------
Q psy9164         213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVI----EGGVCIK-RSTILRDAIVKSHSW------------------  269 (380)
Q Consensus       213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i----~~~~~i~-~~~i~~~~~i~~~~~------------------  269 (380)
                      ..+.|+++++|+|+|.|..+++||++++||++|.|    +..+.|+ ++.|+++|.|+....                  
T Consensus        21 ~~p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~  100 (210)
T d1qrea_          21 SAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGK  100 (210)
T ss_dssp             CCCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTE
T ss_pred             CCCccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccc
Confidence            34578889999999888777888888888888888    4456666 677788887754322                  


Q ss_pred             ecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecce
Q psy9164         270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGED  349 (380)
Q Consensus       270 i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~  349 (380)
                      ...+.||+++.||+++.|     .+++.||++++||.++.+.+ +.||++++|++++.+. |++            +.++
T Consensus       101 ~~~~~IG~~v~IG~~~~i-----~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~-g~~------------i~~g  161 (210)
T d1qrea_         101 EYAVYIGNNVSLAHQSQV-----HGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAI-GVT------------IPDG  161 (210)
T ss_dssp             EESEEECTTCEECTTCEE-----EEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEE-SCE------------ECTT
T ss_pred             ccceeecccccccccccc-----ccCCcccCCcEeeCCccccc-cccccCcEEecCcEec-CcE------------eCCC
Confidence            246889999999999988     35789999999999998876 4678888888777663 222            2344


Q ss_pred             eEecCceEEece
Q psy9164         350 VIVQDELYVNGG  361 (380)
Q Consensus       350 v~i~~~~~i~~~  361 (380)
                      ..|+++++++++
T Consensus       162 ~~I~~g~~v~g~  173 (210)
T d1qrea_         162 RYIPAGMVVTSQ  173 (210)
T ss_dssp             BEECTTCEECSH
T ss_pred             cEECCCcEEeCC
Confidence            557888888765

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.67  E-value=2.7e-16  Score=133.45  Aligned_cols=181  Identities=19%  Similarity=0.282  Sum_probs=137.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|+.|.++|+++|+|+++|+.++++.+...    +++++.+..+++.+||+++++.+++.+   +++|++.++|++
T Consensus        36 li~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~~----~~i~i~~~~~~~~~Gt~~sl~~a~~~l---~~~~ii~~dd~~  108 (229)
T d1jyka_          36 LIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK----YGVRLVFNDKYADYNNFYSLYLVKEEL---ANSYVIDADNYL  108 (229)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH----HCCEEEECTTTTTSCTHHHHHTTGGGC---TTEEEEETTEEE
T ss_pred             HHHHHHHHHHHhCCcccccccccchhhhhhhhhh----ccccccccccccccccccccccchhhh---cccccccccccc
Confidence            6899999999999999999999999888555432    478898888999999999999999999   678888888777


Q ss_pred             cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhcc------
Q psy9164          81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE------  154 (380)
Q Consensus        81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~------  154 (380)
                      ++..+.+.+       ....++.....++..++.+..++++++..+.++|.   .++..+|+|+|++...+.+.      
T Consensus       109 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~  178 (229)
T d1jyka_         109 FKNMFRNDL-------TRSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKA  178 (229)
T ss_dssp             SSCCCCSCC-------CSEEEEECEESSCSSCCEEEECTTCBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHH
T ss_pred             cccchhhhh-------hccccceeeeeeccccceeEEccCCceeeEEEecc---cceEEEEEEEEcHHHHHHHHHHHHHh
Confidence            776554322       12344455556777888899999999999998864   45677899999987654331      


Q ss_pred             ---CCCCC-cccchhhhhhcCCcEEEEEecc-EEEecCChhhHHHHHHH
Q psy9164         155 ---IKPTS-IEKEIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKGMCL  198 (380)
Q Consensus       155 ---~~~~~-~~~~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a~~~  198 (380)
                         ....+ +..+++..+..+..++.+...+ .|.+++++++|.++...
T Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~  227 (229)
T d1jyka_         179 YVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEI  227 (229)
T ss_dssp             HTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHH
T ss_pred             hcccccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHh
Confidence               11111 2233556666677888888776 49999999999887554

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.66  E-value=8.7e-18  Score=139.38  Aligned_cols=97  Identities=15%  Similarity=0.130  Sum_probs=61.2

Q ss_pred             cCCEECCCcEec-CeEEcCCCEECCceEEeeee---Eec---------ceEECccceeCcceEEccceEECCCeEECcce
Q psy9164         260 RDAIVKSHSWLE-GCIIGWKCVVGQWVRMENIT---VLG---------ECIIGWKCVVGQWVRMENITVLGEDVIVQDEL  326 (380)
Q Consensus       260 ~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~---~~~---------~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~  326 (380)
                      +.+.+++++.+. ++.||++|.|+++|+|....   ...         .+.++....+.....+...++||++||||.+|
T Consensus        47 ~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~  126 (203)
T d1mr7a_          47 DKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDV  126 (203)
T ss_dssp             GGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTC
T ss_pred             CceEEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccccccCccCeEECCEEEECCce
Confidence            334444444442 35677777777777663210   000         11112233334444455567788888877777


Q ss_pred             EEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         327 YVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       327 ~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      .|                  .++++||++++|||||+     |+||+||++++
T Consensus       127 ~I------------------~~gv~IG~~~~IgagSv-----V~kdv~~~~i~  156 (203)
T d1mr7a_         127 VI------------------MPGVKIGDGAIVAANSV-----VVKDIAPYMLA  156 (203)
T ss_dssp             EE------------------CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             eE------------------EeEEEEcCCCEEecCeE-----EeeeCCCCEEE
Confidence            77                  67788999999999999     99999999876

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.65  E-value=6.9e-17  Score=124.95  Aligned_cols=119  Identities=11%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEEC
Q psy9164         238 NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLG  317 (380)
Q Consensus       238 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig  317 (380)
                      ++.|+++|.|+ ++.+.+++||++|.|++++.|.++.+.+++.++.++.+..    ..+.+++++.||++|.|. +++|+
T Consensus        14 ~s~Ig~g~~I~-~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~----~~~~i~~~v~Ig~~~~I~-~~iIg   87 (135)
T d1yp2a1          14 DSVIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKL----LAAKGSVPIGIGKNCHIK-RAIID   87 (135)
T ss_dssp             EEEECTTCEEE-EEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHH----HHTTTCCCSEECTTCEEE-SEEEC
T ss_pred             eCEECCCCEEe-CCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEe----cceEcCCCCEECcceEec-cceec
Confidence            46666666664 4556667777777777777776666665555544433311    223445556666666665 46667


Q ss_pred             CCeEECcceEEcCCeeecce-eecCcceeecce-eEecCceEEeceee
Q psy9164         318 EDVIVQDELYVNGGQVLPHK-SIGSSLHMLGED-VIVQDELYVNGGQV  363 (380)
Q Consensus       318 ~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~-v~i~~~~~i~~~~v  363 (380)
                      ++++||+++.++.++...+. .++++. ++..+ ++|+++++|++|++
T Consensus        88 ~~~~IG~g~~i~~~~~~~~~~~~~~~~-~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          88 KNARIGDNVKIINKDNVQEAARETDGY-FIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             TTCEECTTCEECCSSCCSCEEEGGGTE-EEETTEEEECTTCEECTTCB
T ss_pred             CCCEECCCcEECCCcccccceeeCCCE-EECCCeEEECCCCEECcCcC
Confidence            77777777777666655443 333332 32333 56788888887776

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1e-16  Score=138.95  Aligned_cols=188  Identities=20%  Similarity=0.232  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC-CCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN-KSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~-~~~~~~lv~~gD   78 (380)
                      ||+|+|+.+... +.+++++++++..+.+.++...     +.  .+..++...||+.++..+...+. ..++.|+|++||
T Consensus        37 ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~-----~~--~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D  109 (268)
T d2cu2a2          37 LLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD-----GI--RLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPAD  109 (268)
T ss_dssp             HHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS-----SS--EEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             HHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhcc-----cc--ceeeeeecCCcccchhhHHHHHhccCCceeEEEecc
Confidence            689999999874 7788999999888887766543     23  34667888999999887765442 236789999999


Q ss_pred             cccCCChH--HHHHH---HHhcCCcEEEEEEEcCCCCceeEEEECCCC----ceeEEEeCCCCC-------CCCeEEEEE
Q psy9164          79 IICDFPFK--DLVSF---HKNHGKEGTIVVTQVEEPSKYGVVLYNEHG----CIESFIEKPQEF-------VSNKINAGM  142 (380)
Q Consensus        79 ~i~~~~l~--~~l~~---h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~----~v~~~~ek~~~~-------~~~~~~~gi  142 (380)
                      ++++.++.  ..+..   +.+.+..+++...+.+++.+||++..++++    +|..|.|||...       ...++++|+
T Consensus       110 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Gi  189 (268)
T d2cu2a2         110 HYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGV  189 (268)
T ss_dssp             CEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEE
T ss_pred             hhhcccHHHHHHHHHHHHHHhcCCeEeeeccccccccccceEEeccccccchhhheeecccchhhhhhhhccCcccchhh
Confidence            99988753  33332   335556777778888888999999987543    799999999732       236899999


Q ss_pred             EEeCHhHHhhc-cC------------CCCCcccchhhh----------hhcCCcEEEEEeccEEEecCChhhHHHH
Q psy9164         143 YIFNPSVLDRI-EI------------KPTSIEKEIFPL----------MSKEKQLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       143 yi~~~~~l~~l-~~------------~~~~~~~~il~~----------l~~~~~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                      |+|++++|... +.            -......+.++.          |-+..++.+++++++|.|+|++.++.+.
T Consensus       190 y~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~  265 (268)
T d2cu2a2         190 FAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERV  265 (268)
T ss_dssp             EEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHH
T ss_pred             hhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHH
Confidence            99999877332 10            001111223332          2234589999999999999999988754

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.63  E-value=5e-15  Score=122.36  Aligned_cols=130  Identities=19%  Similarity=0.357  Sum_probs=72.7

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCC-----EEcCCcEEe-----ceEEccCCEECCCcEec-CeEEcCCC
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGV-----VIEGGVCIK-----RSTILRDAIVKSHSWLE-GCIIGWKC  279 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~-----~i~~~~~i~-----~~~i~~~~~i~~~~~i~-~~~ig~~~  279 (380)
                      +.+.+.|++++.|+|++.|+++++|++++.|+++|     .|++++.|.     ...+++++.||+++.+. ++.++.++
T Consensus        11 I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~~~~   90 (196)
T d1g97a1          11 IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQV   90 (196)
T ss_dssp             ECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTC
T ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccccceeeccccCcceeecceecccccccccce
Confidence            45556666666666666666555555555555555     445565554     33467788888777773 46777777


Q ss_pred             EECCceEEeeee-----------EecceEECccceeCcceEEc-------cceEECCCeEECcceEEcCCeeecceeecC
Q psy9164         280 VVGQWVRMENIT-----------VLGECIIGWKCVVGQWVRME-------NITVLGEDVIVQDELYVNGGQVLPHKSIGS  341 (380)
Q Consensus       280 ~ig~~~~i~~~~-----------~~~~~~ig~~~~ig~~~~i~-------~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~  341 (380)
                      .++..+.+....           ....+.++.++.+++++...       ..++||+++|+|.++.|     .++.+||+
T Consensus        91 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I-----~~gv~IG~  165 (196)
T d1g97a1          91 HIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTI-----IAPVELGD  165 (196)
T ss_dssp             EEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEE-----ESSCEECT
T ss_pred             eecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEE-----cCCcEECC
Confidence            666555554333           33444445555555554432       33445555555555555     44455666


Q ss_pred             ccee
Q psy9164         342 SLHM  345 (380)
Q Consensus       342 ~~~~  345 (380)
                      ++++
T Consensus       166 ~s~I  169 (196)
T d1g97a1         166 NSLV  169 (196)
T ss_dssp             TCEE
T ss_pred             CCEE
Confidence            5444

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.61  E-value=7.4e-15  Score=125.88  Aligned_cols=197  Identities=21%  Similarity=0.318  Sum_probs=153.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE-eCCc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL-NSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~-~gD~   79 (380)
                      ||+|+|+.|.++|++++++++++..+.+..+...       .+.+.......||.+++..+...+....++++++ .+|.
T Consensus        31 li~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~  103 (250)
T d1g97a2          31 MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-------QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTP  103 (250)
T ss_dssp             HHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTT-------TSEEEECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCT
T ss_pred             HHHHHHHHHHHcCCCeEEEecccccchhhhhccc-------cccccccccccccchHHHHHHHhhhcccCcceEEecCCC
Confidence            6999999999999999999999999888888654       3345667788899999999999885444444444 4454


Q ss_pred             -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHHhhc-
Q psy9164          80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVLDRI-  153 (380)
Q Consensus        80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l~~l-  153 (380)
                       +...+++++++.|.+.++..++...+...+..++.+..++.+++..+.+++..    ...++..+|+|.|+...+... 
T Consensus       104 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l  183 (250)
T d1g97a2         104 LITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEAL  183 (250)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHhhhccccccccceecccCCCceEEEeeceEEEEeeccccccccccccceeeeeeeecchHHHHHHH
Confidence             55667999999999999999999999888889999888888899999887653    346889999999998766432 


Q ss_pred             c---C---CCCCcccchhhhhhcCC-cEEEEEeccEEEe--cCChhhHHHHHHHHHhhhc
Q psy9164         154 E---I---KPTSIEKEIFPLMSKEK-QLYAMELKGFWMD--VGQPRDFLKGMCLYLNSLR  204 (380)
Q Consensus       154 ~---~---~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~--i~~~~~~~~a~~~~l~~~~  204 (380)
                      .   .   ....+..++++.+.+++ ++..+...++|.+  ++|++++..+.+.+.++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~~~  243 (250)
T d1g97a2         184 KNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRIN  243 (250)
T ss_dssp             TTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHHHH
Confidence            2   1   12233456778888776 7999999998855  7799998877666655443

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=1.2e-14  Score=117.29  Aligned_cols=126  Identities=15%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEec
Q psy9164         219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLG  294 (380)
Q Consensus       219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~  294 (380)
                      .+..|+++++|++++.|..++.||++|.|++++.|.    ++.+++++.++..+.+... ....+.++.++.........
T Consensus         9 ~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   87 (173)
T d1v3wa_           9 KKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTS-HGYPTEIGEYVTIGHNAMVH   87 (173)
T ss_dssp             BCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECB-TTBCEEECSSCEECTTCEEE
T ss_pred             CCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccc-cCCCcccCcceeeeeeeeee
Confidence            344566666666666666667777777777777774    5578888888887776321 11222333333333323335


Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeecceeE
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDVI  351 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v~  351 (380)
                      .+.||++++||.++.+.+++.||++++      |++++++.+ +.|++++++.|.|++
T Consensus        88 ~~~Ig~~~~ig~~~~i~~gv~Ig~~~v------IgagsvV~~~~~i~~~~iv~G~Pak  139 (173)
T d1v3wa_          88 GAKVGNYVIIGISSVILDGAKIGDHVI------IGAGAVVPPNKEIPDYSLVLGVPGK  139 (173)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEE------ECTTCEECTTCEECTTEEEEETTEE
T ss_pred             eeecCCcccccceeeecCCEEEcceeE------EcCCcEEeCCeEeCCCCEEcCCCce
Confidence            566666666666655555555555444      554444332 454555555554443

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.58  E-value=1.6e-14  Score=118.25  Aligned_cols=98  Identities=27%  Similarity=0.330  Sum_probs=68.3

Q ss_pred             CccccceeeCCCCEEC--CCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee
Q psy9164         215 DGIVGNVLVDPTATIG--PGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT  291 (380)
Q Consensus       215 ~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~  291 (380)
                      ..|+++++|++++.++  .++.|+++++|+++|.||+++.|. ++.|+++|           .|++++.+++++.+    
T Consensus        75 ~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~-----------~Ig~~~~i~~~~~i----  139 (193)
T d3bswa1          75 NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHEC-----------VIGEFSHVSVGAKC----  139 (193)
T ss_dssp             CEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTC-----------EECTTCEECTTCEE----
T ss_pred             eecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceee-----------eccccccccccccc----
Confidence            4577788888888884  468888888889999999988884 55555554           45555666666666    


Q ss_pred             EecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164         292 VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV  328 (380)
Q Consensus       292 ~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i  328 (380)
                       .+.+.||++++||.++.+.+++.||+++.||++++|
T Consensus       140 -~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV  175 (193)
T d3bswa1         140 -AGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL  175 (193)
T ss_dssp             -CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             -cccceeeccccCCceeeEcCCeEECCCCEECCCCEE
Confidence             345566777777877766666666666665555555

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=9.2e-15  Score=118.07  Aligned_cols=112  Identities=14%  Similarity=0.189  Sum_probs=72.7

Q ss_pred             CCCEEcCCcEEe-ceEEccCCEECCCcEec----CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEEC
Q psy9164         243 PGVVIEGGVCIK-RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLG  317 (380)
Q Consensus       243 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig  317 (380)
                      ++|.|++++.|. ++.||++|.|++++.|.    ...+++++.+++++.++... ...+.++.++......... .+.||
T Consensus        15 ~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~Ig   92 (173)
T d1v3wa_          15 PSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSH-GYPTEIGEYVTIGHNAMVH-GAKVG   92 (173)
T ss_dssp             TTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBT-TBCEEECSSCEECTTCEEE-SCEEC
T ss_pred             cCcEECCCCEEeCceEECCCCEECCCcccccccccccccccccccccccccccc-CCCcccCcceeeeeeeeee-eeecC
Confidence            333333333332 55566677777777663    46889999999999885432 2345556666655544433 47788


Q ss_pred             CCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeecccccc--CCCCCCCcc
Q psy9164         318 EDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIG--SSVPEPQII  379 (380)
Q Consensus       318 ~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~--~~vp~~~iv  379 (380)
                      ++++||.++.|                  +++++||++++||++|+     |+  +++||++++
T Consensus        93 ~~~~ig~~~~i------------------~~gv~Ig~~~vIgagsv-----V~~~~~i~~~~iv  133 (173)
T d1v3wa_          93 NYVIIGISSVI------------------LDGAKIGDHVIIGAGAV-----VPPNKEIPDYSLV  133 (173)
T ss_dssp             SSEEECTTCEE------------------CTTCEECSSEEECTTCE-----ECTTCEECTTEEE
T ss_pred             Ccccccceeee------------------cCCEEEcceeEEcCCcE-----EeCCeEeCCCCEE
Confidence            88888888888                  45566778888888877     55  457777765

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=9e-15  Score=119.92  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeee
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENIT  291 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~  291 (380)
                      .++++++|+|++.+.    .|.++.||++|.|+.+|.|.   .+.||++|.|++++.|.. ....+......+..+    
T Consensus        56 ~iG~~~~I~p~~~i~----~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~----  127 (200)
T d1krra_          56 TVGENAWVEPPVYFS----YGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMY----  127 (200)
T ss_dssp             BCCSSCEECSCEEES----CSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBE----
T ss_pred             cCCCCCEEcCCEEEe----cCCccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceee----
Confidence            355555555555542    13455566666666666652   567889988888887744 334444444333333    


Q ss_pred             EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         292 VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       292 ~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                       ...+.||++++||.++.|.+++.||+++.      |++|+++.+. +++++++.|.|++
T Consensus       128 -~~~v~Igd~v~IG~~~~I~~Gv~IG~~~v------IgagSvV~kd-vp~~~iv~G~PAr  179 (200)
T d1krra_         128 -SFPITIGNNVWIGSHVVINPGVTIGDNSV------IGAGSIVTKD-IPPNVVAAGVPCR  179 (200)
T ss_dssp             -ECCEEECTTCEECTTCEECTTCEECTTCE------ECTTCEECSC-BCTTEEEETTTTE
T ss_pred             -cceEEEccCcccceeeecccccccCCCcE------EeCCCEEeeE-cCCCcEEEEeCCE
Confidence             34566777777777766665555555555      5555554443 4555555555443

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=8.6e-15  Score=100.38  Aligned_cols=69  Identities=26%  Similarity=0.368  Sum_probs=53.5

Q ss_pred             ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCc
Q psy9164         216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQW  284 (380)
Q Consensus       216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~  284 (380)
                      .|.+++.|++++.|++++.|++++.||++|.|+++|.|.++.|++++.|++++.|++++||++|.|||+
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf   78 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPF   78 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence            356777778888888888887777888888888888888788888888887777777777777777764

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.50  E-value=1.9e-13  Score=113.43  Aligned_cols=86  Identities=16%  Similarity=0.225  Sum_probs=56.8

Q ss_pred             eEEcCCCEECCceEEeee---eEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecce
Q psy9164         273 CIIGWKCVVGQWVRMENI---TVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGED  349 (380)
Q Consensus       273 ~~ig~~~~ig~~~~i~~~---~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~  349 (380)
                      +.||++|.|+.++.|+..   .....++|+++|+||.++.+-.++.||++++||++++|++++.+-+..=|  -...+  
T Consensus       150 aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g--~~~~g--  225 (274)
T d3tdta_         150 AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETG--EIHYG--  225 (274)
T ss_dssp             CEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTC--CEESS--
T ss_pred             eEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEeccccceeccCC--cEecc--
Confidence            355555555555555321   11236789999999999999999999999999999999887744332111  11112  


Q ss_pred             eEecCceEEeceee
Q psy9164         350 VIVQDELYVNGGQV  363 (380)
Q Consensus       350 v~i~~~~~i~~~~v  363 (380)
                       .|++++++=+|+.
T Consensus       226 -~vP~~svvv~gs~  238 (274)
T d3tdta_         226 -RVPAGSVVVSGNL  238 (274)
T ss_dssp             -EECTTEEEEEEEE
T ss_pred             -ccCCCCEEecCce
Confidence             3777777766663

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.49  E-value=6.5e-15  Score=113.63  Aligned_cols=120  Identities=15%  Similarity=0.263  Sum_probs=80.8

Q ss_pred             ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec--CeEEcCCCEECCceEEeeeeEecceE
Q psy9164         220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE--GCIIGWKCVVGQWVRMENITVLGECI  297 (380)
Q Consensus       220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~--~~~ig~~~~ig~~~~i~~~~~~~~~~  297 (380)
                      +++|++++.|. ++.+ .+++||++|+|++++.|+++++++++.++....+.  .+.+++++.||++|+|      ++++
T Consensus        14 ~s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I------~~~i   85 (135)
T d1yp2a1          14 DSVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHI------KRAI   85 (135)
T ss_dssp             EEEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEE------ESEE
T ss_pred             eCEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEe------ccce
Confidence            46677777774 3445 47889999999999999888877776665555442  2566777777777777      5677


Q ss_pred             ECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEE
Q psy9164         298 IGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYV  358 (380)
Q Consensus       298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i  358 (380)
                      |++++.||+++.+.+++.+.+.+.+++++.+..|           .++++.+++|++|++|
T Consensus        86 Ig~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g-----------~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          86 IDKNARIGDNVKIINKDNVQEAARETDGYFIKSG-----------IVTVIKDALIPSGIII  135 (135)
T ss_dssp             ECTTCEECTTCEECCSSCCSCEEEGGGTEEEETT-----------EEEECTTCEECTTCBC
T ss_pred             ecCCCEECCCcEECCCcccccceeeCCCEEECCC-----------eEEECCCCEECcCcCC
Confidence            7777777777777666666666665555555433           2345566667776654

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.1e-13  Score=110.47  Aligned_cols=120  Identities=23%  Similarity=0.309  Sum_probs=68.5

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcE-----------EeceEEccCCEECCCcEec-CeEEc--
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVC-----------IKRSTILRDAIVKSHSWLE-GCIIG--  276 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~-----------i~~~~i~~~~~i~~~~~i~-~~~ig--  276 (380)
                      +.....|+++++|+|++.|++++.|++++.|+++|.|+..+.           ..++.+++++.++.++.+. ...++  
T Consensus        11 i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~   90 (201)
T d2oi6a1          11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEG   90 (201)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTT
T ss_pred             ECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeeee
Confidence            444556666667777776666666666666666666654443           2345556666655555542 12222  


Q ss_pred             ---------CCCEECCceEEeeeeEecceEECccceeCcceEEc-------cceEECCCeEECcceEEcC
Q psy9164         277 ---------WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRME-------NITVLGEDVIVQDELYVNG  330 (380)
Q Consensus       277 ---------~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~-------~~~~ig~~~~ig~~~~i~~  330 (380)
                               ..+.+++++.+.+.....++.+++++.+++++...       .++.|++++|+|.++.|.+
T Consensus        91 ~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~  160 (201)
T d2oi6a1          91 AHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVA  160 (201)
T ss_dssp             CEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEES
T ss_pred             eeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcC
Confidence                     33444555555555555666667777766665432       2456666666666666543

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.44  E-value=2.7e-14  Score=118.04  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=38.6

Q ss_pred             ccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164         311 ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII  379 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv  379 (380)
                      ...++||++|+||.+|.|                  .++++||++|+|||+|+     |++|+|+++++
T Consensus       106 ~g~v~Igd~v~IG~~s~I------------------~~gv~IG~~~vIgagSv-----Vtkdvp~~si~  151 (208)
T d1xata_         106 AGDTLIGHEVWIGTEAMF------------------MPGVRVGHGAIIGSRAL-----VTGDVEPYAIV  151 (208)
T ss_dssp             CCCEEECTTCEECTTCEE------------------CTTCEECTTCEECTTCE-----ECSCBCTTEEE
T ss_pred             cCCEEEcCCeEECccccc------------------cCCeEeCCCCEEeCceE-----EeecCCcCcEE
Confidence            345778888888888877                  67788999999999999     99999999876

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.4e-13  Score=94.25  Aligned_cols=68  Identities=18%  Similarity=0.369  Sum_probs=53.4

Q ss_pred             EECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcc
Q psy9164         234 RIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQW  307 (380)
Q Consensus       234 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~  307 (380)
                      .|.+++.||++|.|++++.|+ ++.||++|.||++|.|.++.|++++.|++++.|      .++.||+++.||++
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i------~~~~Ig~~~~IGPf   78 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV------EDANLAAACTIGPF   78 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEE------ESEEECTTCEESCC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEE------ECCEECCCCEECcC
Confidence            455566777777777777776 678899999999999999999999999999888      56777777777653

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.42  E-value=2.2e-12  Score=114.32  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=13.8

Q ss_pred             cceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164         301 KCVVGQWVRMENITVLGEDVIVQDELYVNGG  331 (380)
Q Consensus       301 ~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~  331 (380)
                      ++.|+.++.+...+.|+.++.||.++.+.++
T Consensus       229 ~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~  259 (320)
T d2f9ca1         229 SSQVAEHALIEGNCVLKHHVLVGGHAEVRGG  259 (320)
T ss_dssp             SCEECSSCEEESSEEECTEEEECSSCEEESS
T ss_pred             ccccCcceeeeeeccccCceEECCCeEEeCC
Confidence            3334444444444444444444444444443

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=1.5e-13  Score=115.79  Aligned_cols=45  Identities=16%  Similarity=0.142  Sum_probs=39.5

Q ss_pred             ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164         313 ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM  380 (380)
Q Consensus       313 ~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~  380 (380)
                      ..+||++|+||+|+.|                  .++++||++++|||||+     |+||+|++++++
T Consensus       189 ~~~Ig~~v~IGaga~I------------------lg~v~IG~~a~IgAgsv-----V~kdVp~~~vv~  233 (241)
T d1ssqa_         189 HPKVREGVMIGAGAKI------------------LGNIEVGKYAKIGANSV-----VLNPVPEYATAA  233 (241)
T ss_dssp             SCEECTTCEECTTCEE------------------ESSCEECTTCEECTTCE-----ECSCBCTTCEEE
T ss_pred             CCccCCCeEECCCCEE------------------cCCcEECCCCEECCCCE-----ECCCCCCCCEEE
Confidence            4678888888888888                  67789999999999999     999999999863

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.39  E-value=6.5e-14  Score=115.67  Aligned_cols=133  Identities=11%  Similarity=0.024  Sum_probs=63.5

Q ss_pred             ccCCCccccceeeCCCCEECCCcEECCCcEEC-------CCCEEcCCcEEe-ceEEccCCEECCCcEec---CeEEcCCC
Q psy9164         211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIG-------PGVVIEGGVCIK-RSTILRDAIVKSHSWLE---GCIIGWKC  279 (380)
Q Consensus       211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig-------~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---~~~ig~~~  279 (380)
                      ++|...+...+++++.+.++++++||++++|+       ..+.+++++.|. ++.||++|.|++++.|.   ...+++++
T Consensus         8 i~P~~~~~~~~~I~~~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~   87 (203)
T d1mr7a_           8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGS   87 (203)
T ss_dssp             SSCSTTCCSEEEHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSC
T ss_pred             cCCCCCCCceEEECCCeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCc
Confidence            33433333344444444444444444443332       344555555554 46677788887777662   23444444


Q ss_pred             EECCceEEe----------eeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecce
Q psy9164         280 VVGQWVRME----------NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGED  349 (380)
Q Consensus       280 ~ig~~~~i~----------~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~  349 (380)
                      .+.......          .....+.+.||++|+||.++.|.+++.      ||++++|++|+++.+. +++++++.|.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~------IG~~~~IgagSvV~kd-v~~~~i~~G~P  160 (203)
T d1mr7a_          88 TYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVK------IGDGAIVAANSVVVKD-IAPYMLAGGNP  160 (203)
T ss_dssp             CCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCE------ECTTCEECTTCEECSC-BCTTEEEEETT
T ss_pred             eEeeeeecccccCcccccccccCccCeEECCEEEECCceeEEeEEE------EcCCCEEecCeEEeee-CCCCEEEEEeC
Confidence            432221110          011234566666666666655555554      5555555555555443 34444444444


Q ss_pred             e
Q psy9164         350 V  350 (380)
Q Consensus       350 v  350 (380)
                      +
T Consensus       161 A  161 (203)
T d1mr7a_         161 A  161 (203)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.37  E-value=1.4e-12  Score=108.14  Aligned_cols=121  Identities=21%  Similarity=0.244  Sum_probs=76.5

Q ss_pred             CcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEE
Q psy9164         232 GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRM  310 (380)
Q Consensus       232 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i  310 (380)
                      +.++-|++++..++.|++++++.++++--+++||+++.|. .+++|+.+.||.+|+|++     ++.||.... ..+   
T Consensus       102 g~RvvPga~VR~GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~-----g~~igGvle-p~~---  172 (274)
T d3tdta_         102 GFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG-----GVGIGGVLE-PLQ---  172 (274)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECT-----TCEECCSBT-TBC---
T ss_pred             CEEeCCCceeccCcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCCeEECC-----CcEEEeccc-cCC---
Confidence            3455566667777777777777777777777777777773 478888888888877733     333322110 000   


Q ss_pred             ccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeecc----------ccccCCCCCCCcc
Q psy9164         311 ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPH----------KSIGSSVPEPQII  379 (380)
Q Consensus       311 ~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~----------~~v~~~vp~~~iv  379 (380)
                      ...++|+++|.||+++.|                  ..++.|+++|+||+|+++-.          .....+|||+++|
T Consensus       173 ~~p~iIed~~~IGa~s~v------------------~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svv  233 (274)
T d3tdta_         173 ANPTIIEDNCFIGARSEV------------------VEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVV  233 (274)
T ss_dssp             SSCCEECTTCEECTTCEE------------------CTTCEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEE
T ss_pred             CCCcEEecCcEeccCceE------------------ecCEEecCceEeccceEEeccccceeccCCcEeccccCCCCEE
Confidence            134677888888887777                  45566777777777777311          1122248888876

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.1e-11  Score=103.85  Aligned_cols=194  Identities=19%  Similarity=0.260  Sum_probs=134.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+|+.|...|+++|+|++++..+++.++..+      ....+..+....||++++..+.+.+. ...++++..+|..
T Consensus        32 iie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~-~~~~~~i~~~d~~  104 (248)
T d2oi6a2          32 MVQHVIDAANELGAAHVHLVYGHGGDLLKQALKD------DNLNWVLQAEQLGTGHAMQQAAPFFA-DDEDILMLYGDVP  104 (248)
T ss_dssp             HHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCC------TTEEEEECSSCCCHHHHHHHHGGGSC-TTSEEEEEETTCT
T ss_pred             HHHHHHHHHHHcCCcEEEeccCcccceeeeeccc------ccccccccccCcccHHHHHhhhhhhc-cccceeeecCccc
Confidence            6899999999999999999999999999888655      23445667888999999999999984 3556777788876


Q ss_pred             cCCChHHHHHH-HHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCC----CCCCCCeEEEEEEEeCHhHHhh-cc
Q psy9164          81 CDFPFKDLVSF-HKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKP----QEFVSNKINAGMYIFNPSVLDR-IE  154 (380)
Q Consensus        81 ~~~~l~~~l~~-h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~----~~~~~~~~~~giyi~~~~~l~~-l~  154 (380)
                      +... ..+-.. +.......+++..+..++..++.+..+ +++...+.+++    .+....+..++.|.|+...+.. +.
T Consensus       105 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  182 (248)
T d2oi6a2         105 LISV-ETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRE-NGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLA  182 (248)
T ss_dssp             TCCH-HHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEE-TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHT
T ss_pred             cccc-hhHHHHHHHhhccccceeEEEecCCccccccccc-cCccceeeeccCCChhhhhhhhhhhhhhccchHHHHHHHH
Confidence            5432 222222 223334556666777888888877664 44454554432    2334567899999999877643 32


Q ss_pred             C---C--CC-CcccchhhhhhcCC-cEEEEEeccEEE--ecCChhhHHHHHHHHHhhh
Q psy9164         155 I---K--PT-SIEKEIFPLMSKEK-QLYAMELKGFWM--DVGQPRDFLKGMCLYLNSL  203 (380)
Q Consensus       155 ~---~--~~-~~~~~il~~l~~~~-~i~~~~~~~~~~--~i~~~~~~~~a~~~~l~~~  203 (380)
                      .   .  .. ....++++.+.+.+ ++..+...++|.  .++||+++..|.+.+..+.
T Consensus       183 ~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~~  240 (248)
T d2oi6a2         183 KLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQ  240 (248)
T ss_dssp             TCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred             HhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            1   1  11 12346778888776 777777777763  4789999988876654433

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2e-12  Score=104.14  Aligned_cols=116  Identities=13%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             eeeCCCC--EECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecceE
Q psy9164         221 VLVDPTA--TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECI  297 (380)
Q Consensus       221 ~~i~~~~--~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~~~  297 (380)
                      .+|.+..  .+|.++.||+++.|+++|+|.+++   ...||++|.|++++.|.. +.+++.+...+++.+     .+.+.
T Consensus        59 ~~i~~p~~~~~G~ni~IG~~~~I~~~~~I~d~~---~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~-----~~~v~  130 (182)
T d1ocxa_          59 AYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVC---PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAEL-----GKPVT  130 (182)
T ss_dssp             EEECSCEEESSSTTEEECSSEEECSSEEEECSS---CEEECTTCEECTTCEEECEECCSSHHHHTTTCBE-----ECCEE
T ss_pred             eEEECCEEEEeccceeECCccEECCCcEEecCC---eEEECCCeEECcCceEeecccccceeeeeccceE-----cceeE
Confidence            3455543  345666666666666666665543   336888888887776643 445555555555544     34566


Q ss_pred             ECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         298 IGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      ||++++||.++.|.+++.||+++.||++++|      .++ +++++++.|.|++
T Consensus       131 Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV------~kd-vp~~~i~~G~PAk  177 (182)
T d1ocxa_         131 IGNNVWIGGRAVINPGVTIGDNVVVASGAVV------TKD-VPDNVVVGGNPAR  177 (182)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEE------CSC-BCSSEEEETTTTE
T ss_pred             ECceEeeCceeeccCcEEECCCCEECCCCEE------ccC-CCCCeEEEeeCCE
Confidence            7777777777666666666665555555554      433 5555555555543

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.16  E-value=2.9e-10  Score=100.40  Aligned_cols=50  Identities=20%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             eEECCCeEECcceEEcCCeeecc-eeecCccee------ecceeEecCceEEeceee
Q psy9164         314 TVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHM------LGEDVIVQDELYVNGGQV  363 (380)
Q Consensus       314 ~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~------~~~~v~i~~~~~i~~~~v  363 (380)
                      +.+..++.|+.++.|.+.+.+.+ ..|++++.+      +.+.++|++++.|++++.
T Consensus       224 ~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~  280 (320)
T d2f9ca1         224 PTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEIL  280 (320)
T ss_dssp             CEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEE
T ss_pred             cccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCE
Confidence            33344444444444444332222 334444333      333455555555555554

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=1.8e-10  Score=96.65  Aligned_cols=50  Identities=8%  Similarity=0.007  Sum_probs=30.3

Q ss_pred             ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164         295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI  351 (380)
Q Consensus       295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~  351 (380)
                      ...||++++||.++.|..++.||++++||++++|      .++ +++++++.|.|++
T Consensus       189 ~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV------~kd-Vp~~~vv~G~PAr  238 (241)
T d1ssqa_         189 HPKVREGVMIGAGAKILGNIEVGKYAKIGANSVV------LNP-VPEYATAAGVPAR  238 (241)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEE------CSC-BCTTCEEETTTTE
T ss_pred             CCccCCCeEECCCCEEcCCcEECCCCEECCCCEE------CCC-CCCCCEEEecCcE
Confidence            4566777777777666666666666666666555      332 4555555554443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.04  E-value=1e-10  Score=96.15  Aligned_cols=89  Identities=11%  Similarity=0.051  Sum_probs=43.8

Q ss_pred             ceEEccCCEECCCcEe----cCeEEcCCCEECCceEEee----------eeEecceEECccceeCcceEEccceEECCCe
Q psy9164         255 RSTILRDAIVKSHSWL----EGCIIGWKCVVGQWVRMEN----------ITVLGECIIGWKCVVGQWVRMENITVLGEDV  320 (380)
Q Consensus       255 ~~~i~~~~~i~~~~~i----~~~~ig~~~~ig~~~~i~~----------~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~  320 (380)
                      +..||++|.|++++.+    ..+.+++++.+.+.+....          ....+.++||++|+||.++.|.+++.||+++
T Consensus        54 ~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~  133 (208)
T d1xata_          54 KLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGA  133 (208)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTC
T ss_pred             eeEECCCCEECCCCEEeccCCCcccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccCCeEeCCCC
Confidence            4456666666666655    1233444444443333221          1123456666666666665555555555555


Q ss_pred             EECcceEEcCCeeecceeecCcceeeccee
Q psy9164         321 IVQDELYVNGGQVLPHKSIGSSLHMLGEDV  350 (380)
Q Consensus       321 ~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v  350 (380)
                      +      |++++++.+. ++++.++.|.|+
T Consensus       134 v------IgagSvVtkd-vp~~si~~G~PA  156 (208)
T d1xata_         134 I------IGSRALVTGD-VEPYAIVGGNPA  156 (208)
T ss_dssp             E------ECTTCEECSC-BCTTEEEETTTT
T ss_pred             E------EeCceEEeec-CCcCcEEEecCC
Confidence            5      5555544433 344444444444

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=98.31  E-value=1.1e-05  Score=67.33  Aligned_cols=190  Identities=13%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+++++..+++++|+|.+.  .+++.++..+    .+.++.+.......+|...............+.++.+.||..
T Consensus        28 LI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~~----~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~p  101 (246)
T d1vh1a_          28 MIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP  101 (246)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECC-----CHHHHHHHHHHTTCCTTCEEEECCTTCT
T ss_pred             HHHHHHHHHHHcCCCcEEEEec--Cccccchhhc----ccccceeecccccccchHHHHHHHhhcccccceeeeeccccc
Confidence            6899999999999999999875  5666666654    356666655555555544444444444222345777899984


Q ss_pred             c--CCChHHHHHHHHhcCCcEEEEEEEcCCCCc-----eeEEEECCCCceeEEEeCCC-------------CCCCCeEEE
Q psy9164          81 C--DFPFKDLVSFHKNHGKEGTIVVTQVEEPSK-----YGVVLYNEHGCIESFIEKPQ-------------EFVSNKINA  140 (380)
Q Consensus        81 ~--~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~-----~g~v~~d~~~~v~~~~ek~~-------------~~~~~~~~~  140 (380)
                      .  ..++..+++.+............+......     .-....+.++++..|.+.+.             .....+...
T Consensus       102 l~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (246)
T d1vh1a_         102 MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHL  181 (246)
T ss_dssp             TCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEE
T ss_pred             cchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeecccCcccccccccchhhhhhhhhhhhccchhhheec
Confidence            3  344788888888887766666655443221     12345567888877765422             122345678


Q ss_pred             EEEEeCHhHHhhccCCCCCc-c----cchhhhhhcCCcEEEEEeccE-EEecCChhhHHHHH
Q psy9164         141 GMYIFNPSVLDRIEIKPTSI-E----KEIFPLMSKEKQLYAMELKGF-WMDVGQPRDFLKGM  196 (380)
Q Consensus       141 giyi~~~~~l~~l~~~~~~~-~----~~il~~l~~~~~i~~~~~~~~-~~~i~~~~~~~~a~  196 (380)
                      |+|+|++..|........+. +    -|.+..+-....+..+..... ..+++++.|+..+.
T Consensus       182 giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~  243 (246)
T d1vh1a_         182 GIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVR  243 (246)
T ss_dssp             EEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHH
T ss_pred             ceeeechhhhhhhccCCCChHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHH
Confidence            99999999987653222221 1    122333322336776666553 57999999987664

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.19  E-value=4.8e-05  Score=63.66  Aligned_cols=191  Identities=14%  Similarity=0.162  Sum_probs=117.7

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII   80 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i   80 (380)
                      ||+|+++++.++++++|+|.+.  .+++.+...+    .+..+.+.......||..+...+........+.++.+.||..
T Consensus        28 LI~~~i~~a~~s~i~~IiVsTd--~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~d~p  101 (255)
T d1vica_          28 MIQHVFEKALQSGASRVIIATD--NENVADVAKS----FGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEP  101 (255)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCT
T ss_pred             HHHHHHHHHHHCCCCeEEEEcC--Ccccchhhhh----hccccceeeeccCCcchhhHHHHHHhhccCCceEEEEecchh
Confidence            6899999999999999888765  3445555433    355666666666666655555555554332344677789983


Q ss_pred             -cC-CChHHHHHHHHhcCCcEEEEEEEcCCC-----CceeEEEECCCCceeEEEeCCCC-----------------CCCC
Q psy9164          81 -CD-FPFKDLVSFHKNHGKEGTIVVTQVEEP-----SKYGVVLYNEHGCIESFIEKPQE-----------------FVSN  136 (380)
Q Consensus        81 -~~-~~l~~~l~~h~~~~~~~tl~~~~~~~~-----~~~g~v~~d~~~~v~~~~ek~~~-----------------~~~~  136 (380)
                       .+ .++..+++.+.......+.......+.     ........++++++..+.+.+..                 ....
T Consensus       102 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (255)
T d1vica_         102 LIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAY  181 (255)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTC
T ss_pred             hhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccCCcccccccccccccchhhhhccchhhcccccch
Confidence             33 347888888888777666666554321     22334556677777777654321                 1223


Q ss_pred             eEEEEEEEeCHhHHhhccCCCCCccc-----chhhhhhcCCcEEEEEecc-EEEecCChhhHHHHHH
Q psy9164         137 KINAGMYIFNPSVLDRIEIKPTSIEK-----EIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKGMC  197 (380)
Q Consensus       137 ~~~~giyi~~~~~l~~l~~~~~~~~~-----~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a~~  197 (380)
                      ....|+|+|++..+..+.....+..+     +.+..+-...++..+.... .+.+++|++|+..+..
T Consensus       182 ~~~~~i~~~~~~~l~~~~~~~~~~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~  248 (255)
T d1vica_         182 LRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRA  248 (255)
T ss_dssp             EEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHH
T ss_pred             heeeeeecccHHHHhhhhccCCChhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHH
Confidence            45789999999988665322111110     1122233334666665544 3679999999987743

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=98.01  E-value=0.0002  Score=59.30  Aligned_cols=194  Identities=18%  Similarity=0.204  Sum_probs=114.4

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++++.++ ++++|+|++.  .+.+.+....    .+.++.+.. ....++..+...+...+.  .+.++.+.+|.
T Consensus        29 li~~~i~~a~~~~~~d~Iiv~td--~~~i~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~d~vv~l~~~~   99 (245)
T d1h7ea_          29 MIQHVYERALQVAGVAEVWVATD--DPRVEQAVQA----FGGKAIMTR-NDHESGTDRLVEVMHKVE--ADIYINLQGDE   99 (245)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHH----TTCEEEECC-SCCSSHHHHHHHHHHHSC--CSEEEECCTTC
T ss_pred             HHHHHHHHHHhCCCCCeEEEecc--cccchhhhhh----cCceEEEec-CccccccHHHHHHHHhcC--CCEEEEecchh
Confidence            699999999988 5777777655  3344444433    245554432 333445566777777883  44566678888


Q ss_pred             cc-C-CChHHHHHHHHhcCCcEEEEEEEcCCC-----CceeEEEECCCCceeEEEeCCCC------CCCCeEEEEEEEeC
Q psy9164          80 IC-D-FPFKDLVSFHKNHGKEGTIVVTQVEEP-----SKYGVVLYNEHGCIESFIEKPQE------FVSNKINAGMYIFN  146 (380)
Q Consensus        80 i~-~-~~l~~~l~~h~~~~~~~tl~~~~~~~~-----~~~g~v~~d~~~~v~~~~ek~~~------~~~~~~~~giyi~~  146 (380)
                      .. + ..+..+++.+.................     ...........+....+...+..      ........|+|.|+
T Consensus       100 p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  179 (245)
T d1h7ea_         100 PMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYR  179 (245)
T ss_dssp             TTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEE
T ss_pred             hhcccccchhhhhcccccccccccccccccccccccCCcceeeccchhhhhhhhhhhhhhhhhcccccccceeeeeEEee
Confidence            43 3 347777887776655433333322111     11122333455556666554332      12346689999999


Q ss_pred             HhHHhhccCCCCCc-c--c--chhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhh
Q psy9164         147 PSVLDRIEIKPTSI-E--K--EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSL  203 (380)
Q Consensus       147 ~~~l~~l~~~~~~~-~--~--~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~  203 (380)
                      ++.+..+..-..+. +  +  +.+..+-...++.....+..+.++++++|+..+...+...+
T Consensus       180 ~~~l~~~~~~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~~  241 (245)
T d1h7ea_         180 RDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL  241 (245)
T ss_dssp             HHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred             eccccccccccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhhh
Confidence            99987764322221 1  1  12333333447888888778889999999988865554433

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.0034  Score=50.72  Aligned_cols=177  Identities=11%  Similarity=0.080  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD   78 (380)
                      ||+|+|+.+.++ ++++|+|+++.......+...    .....+.+.....  +...+...+...+.. ..+.++++.||
T Consensus        33 li~~~i~~~~~~~~~~~Iivv~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~v~~~~~d  106 (221)
T d1vpaa_          33 LFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV----FHEKVLGIVEGGD--TRSQSVRSALEFLEKFSPSYVLVHDSA  106 (221)
T ss_dssp             TTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTC----CCTTEEEEEECCS--SHHHHHHHHHHHHGGGCCSEEEEEETT
T ss_pred             HHHHHHHHHHhccccccceEEecchhhhHHHhhh----ccccccccccccc--cccchHHHHHHHHHhcCCCcEEEeccc
Confidence            799999999997 589999988754433222111    1123444433222  334555555544422 25668899999


Q ss_pred             c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC
Q psy9164          79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK  156 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~  156 (380)
                      .  +....+..+++.+.+...  .+...+..+.    .... ++++... ..+    ...+...+-+.|..+.+.....+
T Consensus       107 ~p~~~~~~i~~li~~~~~~~~--~~~~~~~~d~----~~~~-~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~~~~  174 (221)
T d1vpaa_         107 RPFLRKKHVSEVLRRARETGA--ATLALKNSDA----LVRV-ENDRIEY-IPR----KGVYRILTPQAFSYEILKKAHEN  174 (221)
T ss_dssp             SCCCCHHHHHHHHHHHHHHSE--EEEEEECCSE----EEEE-ETTEEEE-ECC----TTEEEEEEEEEEEHHHHHHHHTT
T ss_pred             cccccHHHHHhhhhhhccccc--ccccccccce----eEee-cCcccee-cch----HHHHHhhhhhhhhHHHHHHHHHh
Confidence            7  334447888887776543  2222222221    1222 2222221 111    12345566777877777655443


Q ss_pred             CCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHH
Q psy9164         157 PTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       157 ~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~  196 (380)
                      ...+ .|....+...+ ++.....+.....+++|+|+..|.
T Consensus       175 ~~~~-tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae  214 (221)
T d1vpaa_         175 GGEW-ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELAR  214 (221)
T ss_dssp             CCCC-SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHH
T ss_pred             CCCC-ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHH
Confidence            3333 23334444433 454444333334689999986663

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.13  E-value=0.0019  Score=52.17  Aligned_cols=176  Identities=11%  Similarity=0.125  Sum_probs=101.7

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecC---CCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN---EPLGTAGPLALAKDILNKSQEPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~---~~~gt~~al~~a~~~i~~~~~~~lv~~   76 (380)
                      ||+|+|+++.+++ +++|+|.+  ..+.+.+.+.+    .+..+......   ...++...++.+.+.+....+.++.+.
T Consensus        31 Li~~~i~~~~~s~~~~~Iiv~t--d~~~i~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~  104 (225)
T d1eyra_          31 LLGHTINAAISSKCFDRIIVST--DGGLIAEEAKN----FGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQ  104 (225)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH----TTCEEEECCHHHHSTTCCHHHHHHHHHHHHTCCSEEEEECC
T ss_pred             HHHHHHHHHHHcCCCceEEEee--ccchhhhhhhh----hcceeeeeccccccccccchhhccccccccccccceEEEee
Confidence            6899999999998 57777654  35566666544    24455333322   233344556666666643345578889


Q ss_pred             CCc-cc-CCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC-------CCCCCeEEEEEEEeCH
Q psy9164          77 SDI-IC-DFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ-------EFVSNKINAGMYIFNP  147 (380)
Q Consensus        77 gD~-i~-~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~-------~~~~~~~~~giyi~~~  147 (380)
                      ||. +. ..++..+++.+.+.+.+..+..........+... ..+++....+.....       .......+.++|++++
T Consensus       105 ~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~  183 (225)
T d1eyra_         105 PTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLL-QINNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDT  183 (225)
T ss_dssp             TTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEE-ECSSSCEEESSCGGGGTSCGGGSCCEEEEEEEEEEEEH
T ss_pred             ccccccccccccccceeeccccccccceeeccccccccccc-ccccccccccccccccccccccCcceeeecceeEEeeH
Confidence            998 33 3448888888877776655555555443333333 335555544433211       1112345788999999


Q ss_pred             hHHhhccCCCCCcccchhhhhhcCCcEEEEEecc-EEEecCChhhHHHHH
Q psy9164         148 SVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKGM  196 (380)
Q Consensus       148 ~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a~  196 (380)
                      +.+.......             ..+...+..+. ...++++++|+..+.
T Consensus       184 ~~l~~~~~~~-------------~~~~~~~~i~~~~~~dIdt~eDl~~ae  220 (225)
T d1eyra_         184 ASLIANNCFF-------------IAPTKLYIMSHQDSIDIDTELDLQQAE  220 (225)
T ss_dssp             HHHHHHTSSC-------------CSSCEEEECCTTTTCCCCSHHHHHHHH
T ss_pred             HHHHHcCCcc-------------CCCeEEEEcCccceECCCCHHHHHHHH
Confidence            9875532110             11222233221 246899999987664

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00044  Score=56.38  Aligned_cols=180  Identities=12%  Similarity=0.102  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+|+.+.++ ++++|+|++++..+.+.+.....    ...+....  ...++.++++.+...+. ..+.+++..+|.
T Consensus        33 lI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~----~~~v~~~~--~~~~~~~sv~~~~~~~~-~~~~vl~~~~~~  105 (225)
T d1i52a_          33 ILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLAN----HPQITVVD--GGDERADSVLAGLKAAG-DAQWVLVHDAAR  105 (225)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGG----CTTEEEEE--CCSSHHHHHHHHHHTST-TCSEEEECCTTC
T ss_pred             HHHHHHHHHHhCccccccccccchhhhhhhhhhhcc----cccccccc--CCcchhHHHHhhhcccC-ccceeeeeccCC
Confidence            689999999988 68999999988766655554431    12233322  23345688999988884 133345556774


Q ss_pred             --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhc-c--
Q psy9164          80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-E--  154 (380)
Q Consensus        80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l-~--  154 (380)
                        +...++..+++...... ...+...+..++..+   ....++......++..    -....+.+.|..+.+... .  
T Consensus       106 p~i~~~~~~~~~~~~~~~~-~~~v~~~~~~d~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~f~~~~l~~~~~~~  177 (225)
T d1i52a_         106 PCLHQDDLARLLALSETSR-TGGILAAPVRDTMKR---AEPGKNAIAHTVDRNG----LWHALTPQFFPRELLHDCLTRA  177 (225)
T ss_dssp             TTCCHHHHHHHHGGGGTCS-SCEEEEEECCSCEEE---ECTTSSSEEEEECCTT----CEEEEEEEEEEHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhhhhcc-cccccccceeeccch---hcccccccccccchHH----HHHHhhhhhhhhHHHHHHHHHH
Confidence              33333556555554443 344445554443221   2223334433333211    122335566666655332 1  


Q ss_pred             -CCCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHH
Q psy9164         155 -IKPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGM  196 (380)
Q Consensus       155 -~~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~  196 (380)
                       ..... ..|....+...+ ++.....+..-..+++|+|+..|.
T Consensus       178 ~~~~~~-~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae  220 (225)
T d1i52a_         178 LNEGAT-ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAE  220 (225)
T ss_dssp             HHTTCC-CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHH
T ss_pred             HhcCCC-CCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHH
Confidence             11111 233333444433 444443222224588999987763

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=96.97  E-value=0.0035  Score=50.87  Aligned_cols=180  Identities=10%  Similarity=0.105  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD   78 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD   78 (380)
                      ||+|+|+.+.+++ +++|+|+++... +.++++.    ...+..+.+...  ...+.++++.+...+....+.+++..||
T Consensus        34 li~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~----~~~~~~~~~~~g--g~~r~~sv~~~l~~~~~~~~~Vli~d~~  107 (226)
T d1w77a1          34 IALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE----ESIDVDLRFAIP--GKERQDSVYSGLQEIDVNSELVCIHDSA  107 (226)
T ss_dssp             HHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTT----TSCSSEEEEECC--CSSHHHHHHHHHHTSCTTCSEEEEEETT
T ss_pred             HHHHHHHHHHhhccccceeeccchhhhhhhhccc----cccccccccccc--cchhhhhhhhhHhhhccccccceecccc
Confidence            6899999999985 688888887543 3333332    233455554432  1124577888887774334556777898


Q ss_pred             c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhc---
Q psy9164          79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI---  153 (380)
Q Consensus        79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l---  153 (380)
                      .  +....+..+++.+...+..  +...+..+...+    ...++......+.    .......+.+.|+.+.+...   
T Consensus       108 ~P~i~~~~i~~l~~~~~~~~~~--i~~~~~~d~~~~----~~~~~~~~~~~~r----~~~~~~~~p~~f~~~~l~~~~~~  177 (226)
T d1w77a1         108 RPLVNTEDVEKVLKDGSAVGAA--VLGVPAKATIKE----VNSDSLVVKTLDR----KTLWEMQTPQVIKPELLKKGFEL  177 (226)
T ss_dssp             CTTCCHHHHHHHHHHHHHHSEE--EEEEECCSCCCC----BCTTSCBC----------CCEEEEEEEEECHHHHHHHHHH
T ss_pred             cccccHHHhhhhhhhhhccCce--eeccccccceEE----EccCCceeecccc----hhhhHHHHHHhHhhHHHHHHHHH
Confidence            7  3344478888887776543  333333332221    1122222221111    22344557788887766432   


Q ss_pred             -cCCCCCcccchhhhhhc-CCcEEEEEeccEEEecCChhhHHHHHH
Q psy9164         154 -EIKPTSIEKEIFPLMSK-EKQLYAMELKGFWMDVGQPRDFLKGMC  197 (380)
Q Consensus       154 -~~~~~~~~~~il~~l~~-~~~i~~~~~~~~~~~i~~~~~~~~a~~  197 (380)
                       ......+ .|....+.. ..++...+-+..-..+.+|+|+..|..
T Consensus       178 ~~~~~~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~  222 (226)
T d1w77a1         178 VKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAER  222 (226)
T ss_dssp             HHHSCCCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred             HHhcCCCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHH
Confidence             1222222 121112222 234444333322345889999887743

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00015  Score=59.59  Aligned_cols=77  Identities=17%  Similarity=0.095  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.|..+|++++++++++.....               .........|+.++++.+.+.+   ++.+++++||. 
T Consensus        34 li~~~~~~l~~~~~~~vvv~~~~~~~~~---------------~~~~~~~~~~~~~~v~~al~~~---~~~~lv~~~D~P   95 (231)
T d2dpwa1          34 MVEWVLEALYAAGLSPVYVGENPGLVPA---------------PALTLPDRGGLLENLEQALEHV---EGRVLVATGDIP   95 (231)
T ss_dssp             THHHHHHHHHHTTCEEEEESCCSSCSSC---------------CSEEECCCSSHHHHHHHHHHTC---CSEEEEEETTCT
T ss_pred             HHHHHHHHHHhcCCCeEEeeeeccccce---------------eeeecccchHHHHHHHHHHHhh---cCceEEeeCCCc
Confidence            7999999999999999998887643211               0112345568889999999999   67899999998 


Q ss_pred             c-cCCChHHHHHHHHhc
Q psy9164          80 I-CDFPFKDLVSFHKNH   95 (380)
Q Consensus        80 i-~~~~l~~~l~~h~~~   95 (380)
                      + ....++.+++.+.+.
T Consensus        96 ~i~~~~i~~l~~~~~~~  112 (231)
T d2dpwa1          96 HLTEEAVRFVLDKAPEA  112 (231)
T ss_dssp             TCCHHHHHHHHHHCCSC
T ss_pred             cCCHHHHHHHHHHhhhc
Confidence            3 344478888765443

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=96.82  E-value=0.0041  Score=50.42  Aligned_cols=180  Identities=12%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEee--cCCCCCCchHHHHhHHhhCCCC-CcEEEEe
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSH--ENEPLGTAGPLALAKDILNKSQ-EPFFVLN   76 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~--~~~~~gt~~al~~a~~~i~~~~-~~~lv~~   76 (380)
                      ||+|+|+.+.+++ +++++|+++.. +.+.+++....  ..... +..  .....+...++....+.....+ +.+++..
T Consensus        33 li~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~--~~~~~-~~~g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~  108 (226)
T d1vgwa_          33 VLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAF--PQVRV-WKNGGQTRAETVRNGVAKLLETGLAAETDNILVHD  108 (226)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHC--TTSEE-ECCCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECC
T ss_pred             HHHHHHHHHHhCCCccccceecchh-hhhhhhhcccc--cceee-ccccccccchhhhHHHHHHHHhcccccccceeecc
Confidence            6899999999986 46666665543 34445544311  11221 211  1111222233333333321223 3356667


Q ss_pred             CCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHh-hc
Q psy9164          77 SDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RI  153 (380)
Q Consensus        77 gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~-~l  153 (380)
                      ||.  +....+..+++.+........+ ..+..+    .... .+++.+....++..-   .... .-..|..+.+. .+
T Consensus       109 ~~~P~i~~~~i~~~i~~~~~~~~~~i~-~~~~~~----~~~~-~~~~~i~~~~~r~~~---~~~~-~p~~f~~~~l~~~~  178 (226)
T d1vgwa_         109 AARCCLPSEALARLIEQAGNAAEGGIL-AVPVAD----TLKR-AESGQISATVDRSGL---WQAQ-TPQLFQAGLLHRAL  178 (226)
T ss_dssp             TTCTTCCHHHHHHHHHHHTTCTTCEEE-EEECCS----CEEE-ESSSBEEEEECCTTE---EEEE-EEEEEEHHHHHHHH
T ss_pred             cccccCcHHHHHHHHhhhcccccceee-cccccc----ccee-ccCCeEEeccchHHH---HHHH-hhhcccHHHHHHHH
Confidence            875  3344478888888777665443 333222    1222 256666666554321   1111 22445545443 33


Q ss_pred             cCCC-CCcccchhhhhhcC-CcEEEEEeccEEEecCChhhHHHH
Q psy9164         154 EIKP-TSIEKEIFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKG  195 (380)
Q Consensus       154 ~~~~-~~~~~~il~~l~~~-~~i~~~~~~~~~~~i~~~~~~~~a  195 (380)
                      .... ..+ .|....+.+. .++....-+.....+++|+|+..|
T Consensus       179 ~~~~~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~a  221 (226)
T d1vgwa_         179 AAENLGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIV  221 (226)
T ss_dssp             HC----CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHH
T ss_pred             HHhhcCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHH
Confidence            2221 112 2323333333 355554444445678999998766

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.066  Score=41.27  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      ||+|+++.+... +.+++|+++...+....        .+..+.....+...+...++..+.....  .+.++++.||+ 
T Consensus        32 ll~~~l~~l~~~-~~~ivv~~~~~~~~~~~--------~~~~v~~d~~~~~~~~~~g~~~~~~~~~--~~~vlv~~~D~P  100 (188)
T d1e5ka_          32 LWQHVADALMTQ-LSHVVVNANRHQEIYQA--------SGLKVIEDSLADYPGPLAGMLSVMQQEA--GEWFLFCPCDTP  100 (188)
T ss_dssp             HHHHHHHHHHHH-CSCEEEECSSSHHHHHT--------TSCCEECCCTTCCCSHHHHHHHHHHHCC--SSEEEEEETTCT
T ss_pred             hhHHHHhhhccc-ccccccccCccHHhhhh--------cCCCccccccccccchhHHHHHHHHhcc--cceEEEeccCCC
Confidence            589999999886 56777777765543221        1334433333444556666666666663  56699999999 


Q ss_pred             ccCCC-hHHHHHH
Q psy9164          80 ICDFP-FKDLVSF   91 (380)
Q Consensus        80 i~~~~-l~~~l~~   91 (380)
                      +.+.+ ++.+++.
T Consensus       101 ~i~~~~i~~L~~~  113 (188)
T d1e5ka_         101 YIPPDLAARLNHQ  113 (188)
T ss_dssp             TCCTTHHHHHHHT
T ss_pred             CCCHHHHHHHHHh
Confidence            44545 4555543

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.72  E-value=0.52  Score=37.07  Aligned_cols=100  Identities=11%  Similarity=0.196  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC--CCCcEEEEeC
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK--SQEPFFVLNS   77 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~--~~~~~lv~~g   77 (380)
                      ||+|+++++.+++ +++|+|.+.  .+.+.+....    .+..+.........++...+....+.+..  ..+.++++.+
T Consensus        30 Li~~~i~~~~ks~~id~Iivstd--~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~  103 (228)
T d1qwja_          30 LIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ----FGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQA  103 (228)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH----TTCEEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECT
T ss_pred             HHHHHHHHHHhcCCcceEEEecc--hhhhhhhhhh----cCccccccccccccccchhhhhhhhccccccccceeeeecc
Confidence            6899999999987 677777653  4455555544    24555443333333444444444444422  2345677778


Q ss_pred             Cc--ccCCChHHHHHHHHhcCCcEEEEEEEc
Q psy9164          78 DI--ICDFPFKDLVSFHKNHGKEGTIVVTQV  106 (380)
Q Consensus        78 D~--i~~~~l~~~l~~h~~~~~~~tl~~~~~  106 (380)
                      |.  +...++.++++.+.+.+.+..+.+.+.
T Consensus       104 ~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~  134 (228)
T d1qwja_         104 TSPCLHPTDLQKVAEMIREEGYDSVFSVVRR  134 (228)
T ss_dssp             TCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE
T ss_pred             cccccCchhhhhhhhhhhccCcccccccccc
Confidence            87  334458899999988887766655543

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.56  E-value=3.6  Score=35.04  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             HHHHHHHHHH----cCC-CEEEEEccC-ChHHHHHHHccccccCCcEEEEeecC------------------------CC
Q psy9164           2 LLHQIEALVE----AGV-REVILAVSY-RAEQMEDELTVETKKLGISLVFSHEN------------------------EP   51 (380)
Q Consensus         2 i~~~l~~l~~----~gi-~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~------------------------~~   51 (380)
                      ++..++++..    .|. -.++|.+++ ..+..+++++++ ..+++.+.+..|.                        .+
T Consensus       106 ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~-~~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P  184 (378)
T d2icya2         106 LDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKY-TNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYP  184 (378)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGG-TTSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHh-ccCCCceEEEEecccccccCCcccccccccCCCcceeec
Confidence            4445555543    232 245666665 568999999883 4556666554321                        14


Q ss_pred             CCCchHHHHhH------HhhCCCCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCC-CceeEEEE-CCCCce
Q psy9164          52 LGTAGPLALAK------DILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-SKYGVVLY-NEHGCI  123 (380)
Q Consensus        52 ~gt~~al~~a~------~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-~~~g~v~~-d~~~~v  123 (380)
                      -|+++......      .+.....+.+.+.+.|.+....-..++..|.++++++++-+.+...+ .+-|.+.. |..-++
T Consensus       185 ~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~v  264 (378)
T d2icya2         185 PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQL  264 (378)
T ss_dssp             CCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEE
T ss_pred             CCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHHHHhcCCcceeEEEecCCCCCceeEEEEECCceee
Confidence            47777655332      23333467789999999766555778889999999988877765443 34454443 333345


Q ss_pred             eEEEeCCCCC--------CCCeEEEEEEEeCHhHHhhc
Q psy9164         124 ESFIEKPQEF--------VSNKINAGMYIFNPSVLDRI  153 (380)
Q Consensus       124 ~~~~ek~~~~--------~~~~~~~giyi~~~~~l~~l  153 (380)
                      +++.|.|.+.        .-.+.+++.++|+-+.++.+
T Consensus       265 vEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~  302 (378)
T d2icya2         265 LEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKL  302 (378)
T ss_dssp             ECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHH
T ss_pred             eehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHH
Confidence            5555555421        22467999999999998766

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=88.64  E-value=0.69  Score=36.10  Aligned_cols=74  Identities=16%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164           1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI-   79 (380)
Q Consensus         1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~-   79 (380)
                      |+.++|+.+.++++..++++.......      .  ......+.  .+.  .|-..++..+.+.-   .+.++++.+|+ 
T Consensus        32 ml~~tl~~l~~~~~~~v~~vs~~~~~~------~--~~~~~~~~--~~~--~~L~~al~~a~~~~---~~~vliig~DlP   96 (208)
T d2i5ea1          32 MLNQVISSLKGAGIEQVDILSPSVYGL------E--EMTEARVL--LDE--KDLNEALNRYLKEA---EEPVLIVMADLP   96 (208)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEESSCTTC------S--SCCSSEEE--ECC--SCHHHHHHHHHHHC---CSCEEEECSCCT
T ss_pred             HHHHHHHHHHhCCCcEEEEEcCcHHHH------H--HhhcCCcc--cCC--CCHHHHHHHHHhcC---CCCEEEecCCcC
Confidence            678999999999999999887643211      1  11122332  222  24456777776654   67899999998 


Q ss_pred             -ccCCChHHHH
Q psy9164          80 -ICDFPFKDLV   89 (380)
Q Consensus        80 -i~~~~l~~~l   89 (380)
                       +...++.+++
T Consensus        97 ~L~~~~l~~a~  107 (208)
T d2i5ea1          97 LLSPEHIKEIS  107 (208)
T ss_dssp             TCCHHHHHHHT
T ss_pred             cCCHHHHHHHH
Confidence             5565566554

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=85.43  E-value=0.17  Score=39.64  Aligned_cols=93  Identities=13%  Similarity=0.120  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164           1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI   79 (380)
Q Consensus         1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~   79 (380)
                      ||+|+++.+.+.. +++|+|+ ....+.++++..      ...+  ..  ....-..+++.+...+.  .+.+++..||.
T Consensus        31 ii~~~l~~~~~~~~~~~Ivvv-~~~~~~~~~~~~------~~~~--v~--Gg~~r~~Sv~~gl~~~~--~~~VlIhd~~r   97 (205)
T d1w55a1          31 LWLYATKNLSSFYPFKKIVVT-SSNITYMKKFTK------NYEF--IE--GGDTRAESLKKALELID--SEFVMVSDVAR   97 (205)
T ss_dssp             HHHHHHHHHHTTSCCSCEEEE-ESCHHHHHTTCS------SSEE--EE--CCSSHHHHHHHHHTTCC--SSEEEEEETTC
T ss_pred             HHHHHHHHHHhhccccccccc-cccccccccccc------cccc--cc--cccchhhhhhhhhhhhh--hcceeeeccCc
Confidence            5899999999876 5666665 444444433321      2233  22  11112367888888883  34467778987


Q ss_pred             -ccC-CChHHHHHHHHhcCCcEEEEEEEcCC
Q psy9164          80 -ICD-FPFKDLVSFHKNHGKEGTIVVTQVEE  108 (380)
Q Consensus        80 -i~~-~~l~~~l~~h~~~~~~~tl~~~~~~~  108 (380)
                       +.+ ..+.++++.+.+.  .+.+.+.+..+
T Consensus        98 P~i~~~~i~~li~~~~~~--~~~i~~~~~~d  126 (205)
T d1w55a1          98 VLVSKNLFDRLIENLDKA--DCITPALKVAD  126 (205)
T ss_dssp             TTCCHHHHHHHHTTGGGC--SEEEEEECCCS
T ss_pred             ccCcHHHHHHHHhhhhcc--ccccccccccc
Confidence             444 3467888776554  34554544443

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.49  E-value=5.1  Score=32.91  Aligned_cols=92  Identities=12%  Similarity=0.182  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHcCC----CEEEEEccC-Ch----HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcE
Q psy9164           2 LLHQIEALVEAGV----REVILAVSY-RA----EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPF   72 (380)
Q Consensus         2 i~~~l~~l~~~gi----~~i~vv~~~-~~----~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~   72 (380)
                      |.++|+.+.+.--    .+|+||=.. ..    +.+++++..    ....+.+...++..|-+.+.-.+.....  .+-+
T Consensus        38 l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~----~~~~i~vi~~~~n~G~~~a~N~Gi~~a~--gd~i  111 (328)
T d1xhba2          38 LLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKK----LKVPVHVIRMEQRSGLIRARLKGAAVSR--GQVI  111 (328)
T ss_dssp             HHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHS----SSSCEEEEECSSCCCHHHHHHHHHHHCC--SSEE
T ss_pred             HHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHh----cCCCeEEEEecccccchHHHHHHHHhhh--ccee
Confidence            4567777776532    367666432 21    233444433    2345666666777788888878777773  4456


Q ss_pred             EEEeCCcccCCC-hHHHHHHHHhcCCcE
Q psy9164          73 FVLNSDIICDFP-FKDLVSFHKNHGKEG   99 (380)
Q Consensus        73 lv~~gD~i~~~~-l~~~l~~h~~~~~~~   99 (380)
                      +++++|.+...+ |..+++...+.....
T Consensus       112 ~flD~D~~~~p~~l~~l~~~~~~~~~~~  139 (328)
T d1xhba2         112 TFLDAHCECTAGWLEPLLARIKHDRRTV  139 (328)
T ss_dssp             EEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred             eecCcccccChhHHHHHHHHHhcCCCeE
Confidence            788999976666 788888777766543