Psyllid ID: psy9165

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
MTPPPNLVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP
cccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHcccccccccccHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccEEccccccccccEEEEEcHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccHHcccccHHHHHHHHcccccccccccc
cccccccEEEEEEEcccccEEEEEEEEccccHHHcHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHEEEcccccccccHHHHHHcccccccEcccccccccEcccccHHHHHccHHHHHHHHccHHHHHHcccc
mtpppnlvrcFTVSFSVAQRECISVHVGQAGVQIGNACWELYclehgigpdgvrkceenllpasdpslgtffdetpngkvvprgvmidlepsVIDEIIEETLDRFRRLADSCSSLQGFLLfhsfgggtgsgfTSLLLHQLEQEFdkksrlgfiiypspcvstsvvepynavlsthstlhnvdcafmmdneatYDICQRKlnierpsynnLNRLISQVVSSITAslrfdgalnvdltefqtnlvpyprihfplttyspimsttkayhegMTVAQITAEcfepanqmvkcnp
MTPPPNLVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTefqtnlvpypriHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP
MTPPPNLVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCsslqgfllfhsfgggtgsgftslllhQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP
******LVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPA***SLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFE**********
*********CFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKC********DPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP
MTPPPNLVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP
*TPPPNLVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTPPPNLVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query290 2.2.26 [Sep-21-2011]
Q91060 450 Tubulin alpha chain OS=No N/A N/A 0.931 0.6 0.638 1e-103
P08537 449 Tubulin alpha chain OS=Xe N/A N/A 0.931 0.601 0.638 1e-103
Q6AYZ1 449 Tubulin alpha-1C chain OS yes N/A 0.931 0.601 0.638 1e-103
P68373 449 Tubulin alpha-1C chain OS yes N/A 0.931 0.601 0.638 1e-103
P68365 449 Tubulin alpha-1C chain OS yes N/A 0.931 0.601 0.638 1e-103
Q9BQE3 449 Tubulin alpha-1C chain OS yes N/A 0.931 0.601 0.638 1e-103
Q6P9V9 451 Tubulin alpha-1B chain OS yes N/A 0.931 0.598 0.635 1e-102
Q2XVP4 451 Tubulin alpha-1B chain OS yes N/A 0.931 0.598 0.635 1e-102
P05213 451 Tubulin alpha-1B chain OS yes N/A 0.931 0.598 0.635 1e-102
P68360 451 Tubulin alpha-1B chain OS N/A N/A 0.931 0.598 0.635 1e-102
>sp|Q91060|TBA_NOTVI Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1 Back     alignment and function desciption
 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/307 (63%), Positives = 230/307 (74%), Gaps = 37/307 (12%)

Query: 20  RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
           RECISVHVGQAGVQ+GNACWELYCLEHGI PDG +   +  +   D S  TFF ET  GK
Sbjct: 2   RECISVHVGQAGVQMGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 80  VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
            VPR + +DLEPSVIDE                                    II++ LD
Sbjct: 61  HVPRAIFVDLEPSVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDQVLD 120

Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
           R R+LAD C+ LQGFL+FHSFGGGTGSGFTSLL+ +L  ++ KKS+L F IYP+P VST+
Sbjct: 121 RMRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
           VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERPSY NLNRLISQ+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLISQIVSSITA 240

Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
           SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S  KAYHE ++VA+IT  CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 284 QMVKCNP 290
           QMVKC+P
Sbjct: 301 QMVKCDP 307
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Notophthalmus viridescens (taxid: 8316)
>sp|P08537|TBA_XENLA Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2 Back     alignment and function description
>sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1 Back     alignment and function description
>sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1 Back     alignment and function description
>sp|Q6P9V9|TBA1B_RAT Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1 Back     alignment and function description
>sp|Q2XVP4|TBA1B_PIG Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1 Back     alignment and function description
>sp|P05213|TBA1B_MOUSE Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2 Back     alignment and function description
>sp|P68360|TBA1B_MERUN Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
72057634 463 PREDICTED: tubulin alpha chain-like isof 0.934 0.585 0.613 1e-108
418207526 415 alpha tubulin 84B, partial [Drosophila m 0.931 0.650 0.622 1e-108
72057626 450 PREDICTED: tubulin alpha chain-like isof 0.931 0.6 0.615 1e-107
392601506 448 alpha-tubulin, partial [Teleopsis quinqu 0.924 0.598 0.602 1e-106
392601510 425 alpha-tubulin, partial [Teleopsis dalman 0.920 0.628 0.599 1e-105
392601472 412 alpha-tubulin, partial [Teleopsis whitei 0.920 0.648 0.596 1e-105
392601470 411 alpha-tubulin, partial [Teleopsis thaii] 0.920 0.649 0.596 1e-105
392601466 414 alpha-tubulin, partial [Teleopsis dalman 0.920 0.644 0.592 1e-104
47229230 1029 unnamed protein product [Tetraodon nigro 0.937 0.264 0.566 1e-103
380016290 475 PREDICTED: tubulin alpha chain-like [Api 0.941 0.574 0.620 1e-103
>gi|72057634|ref|XP_802011.1| PREDICTED: tubulin alpha chain-like isoform 5 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/308 (61%), Positives = 231/308 (75%), Gaps = 37/308 (12%)

Query: 19  QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNG 78
           +RECIS+HVGQAGVQ+GN+CWELYCLEHGI PDG+   + +    +D +  TFF ET NG
Sbjct: 14  RRECISIHVGQAGVQMGNSCWELYCLEHGIQPDGMMPGDTSPGKEND-AFNTFFSETGNG 72

Query: 79  KVVPRGVMIDLEPSVIDEI------------------------------------IEETL 102
           K VPR VM+DLEPSV+DE+                                    I+  +
Sbjct: 73  KHVPRAVMVDLEPSVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGREHIDNVM 132

Query: 103 DRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVST 162
           DR RRLAD+CS LQGFL+FHSFGGGTGSG  +LL+ +L  +F KKS+L F IYP+P VST
Sbjct: 133 DRIRRLADNCSGLQGFLIFHSFGGGTGSGLNALLMERLSVDFGKKSKLEFAIYPAPQVST 192

Query: 163 SVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT 222
           +VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERPSY NLNRLI Q+VSSIT
Sbjct: 193 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYQNLNRLIGQIVSSIT 252

Query: 223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPA 282
           ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S+ KA+HE ++V++IT  CFEP 
Sbjct: 253 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSEKAFHEQLSVSEITTSCFEPL 312

Query: 283 NQMVKCNP 290
           NQMVKC+P
Sbjct: 313 NQMVKCDP 320

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota
>gi|418207526|gb|AFX62860.1| alpha tubulin 84B, partial [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|72057626|ref|XP_780117.1| PREDICTED: tubulin alpha chain-like isoform 1 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|392601506|gb|AFM80105.1| alpha-tubulin, partial [Teleopsis quinqueguttata] Back     alignment and taxonomy information
>gi|392601510|gb|AFM80107.1| alpha-tubulin, partial [Teleopsis dalmanni] Back     alignment and taxonomy information
>gi|392601472|gb|AFM80088.1| alpha-tubulin, partial [Teleopsis whitei] Back     alignment and taxonomy information
>gi|392601470|gb|AFM80087.1| alpha-tubulin, partial [Teleopsis thaii] Back     alignment and taxonomy information
>gi|392601466|gb|AFM80085.1| alpha-tubulin, partial [Teleopsis dalmanni] Back     alignment and taxonomy information
>gi|47229230|emb|CAG03982.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|380016290|ref|XP_003692120.1| PREDICTED: tubulin alpha chain-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
UNIPROTKB|E2RNQ2 511 TUBA1C "Uncharacterized protei 0.672 0.381 0.635 2.7e-92
UNIPROTKB|F5H5D3 519 TUBA1C "Tubulin alpha-1C chain 0.672 0.375 0.635 8.9e-92
UNIPROTKB|L7N0B2 451 TUBA1B "Uncharacterized protei 0.672 0.432 0.630 1.1e-91
UNIPROTKB|Q9BQE3 449 TUBA1C "Tubulin alpha-1C chain 0.672 0.434 0.635 1.5e-91
MGI|MGI:1095409 449 Tuba1c "tubulin, alpha 1C" [Mu 0.672 0.434 0.635 1.5e-91
RGD|1307226 449 Tuba1c "tubulin, alpha 1C" [Ra 0.672 0.434 0.635 1.5e-91
UNIPROTKB|L7N0G4 451 TUBA3C "Uncharacterized protei 0.672 0.432 0.625 1.5e-91
ZFIN|ZDB-GENE-051127-7 450 zgc:123298 "zgc:123298" [Danio 0.672 0.433 0.620 1.9e-91
UNIPROTKB|F1SHC1 449 TUBA1C "Uncharacterized protei 0.672 0.434 0.630 3e-91
UNIPROTKB|F1NXR6 447 TUBA1C "Uncharacterized protei 0.672 0.436 0.630 3.8e-91
UNIPROTKB|E2RNQ2 TUBA1C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 654 (235.3 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
 Identities = 124/195 (63%), Positives = 148/195 (75%)

Query:    96 EIIEETLDRFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIY 155
             EII+  LDR R+LAD C                          +L  ++ KKS+L F IY
Sbjct:   175 EIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 234

Query:   156 PSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLIS 215
             P+P VST+VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLIS
Sbjct:   235 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIS 294

Query:   216 QVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQIT 275
             Q+VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S  KAYHE +TVA+IT
Sbjct:   295 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEIT 354

Query:   276 AECFEPANQMVKCNP 290
               CFEPANQMVKC+P
Sbjct:   355 NACFEPANQMVKCDP 369
GO:0005874 "microtubule" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
UNIPROTKB|F5H5D3 TUBA1C "Tubulin alpha-1C chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0B2 TUBA1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQE3 TUBA1C "Tubulin alpha-1C chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1095409 Tuba1c "tubulin, alpha 1C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307226 Tuba1c "tubulin, alpha 1C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0G4 TUBA3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051127-7 zgc:123298 "zgc:123298" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHC1 TUBA1C "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXR6 TUBA1C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P68365TBA1C_CRIGRNo assigned EC number0.63840.93100.6013yesN/A
P68366TBA4A_HUMANNo assigned EC number0.63190.93100.6026yesN/A
P68361TBA1B_CRIGRNo assigned EC number0.63510.93100.5986yesN/A
P68363TBA1B_HUMANNo assigned EC number0.63510.93100.5986yesN/A
P68369TBA1A_MOUSENo assigned EC number0.63190.93100.5986yesN/A
P68368TBA4A_MOUSENo assigned EC number0.63190.93100.6026yesN/A
Q71U36TBA1A_HUMANNo assigned EC number0.63190.93100.5986yesN/A
Q6P9V9TBA1B_RATNo assigned EC number0.63510.93100.5986yesN/A
P68362TBA1A_CRIGRNo assigned EC number0.63190.93100.5986yesN/A
Q13748TBA3C_HUMANNo assigned EC number0.62210.93100.6yesN/A
Q2HJ86TBA1D_BOVINNo assigned EC number0.63190.93100.5973yesN/A
Q28IX8TBA_XENTRNo assigned EC number0.63190.93100.6013yesN/A
Q32KN8TBA3_BOVINNo assigned EC number0.62210.93100.6yesN/A
Q3ZCJ7TBA1C_BOVINNo assigned EC number0.63190.93100.6013yesN/A
Q5XIF6TBA4A_RATNo assigned EC number0.63190.93100.6026yesN/A
Q2XVP4TBA1B_PIGNo assigned EC number0.63510.93100.5986yesN/A
Q6AYZ1TBA1C_RATNo assigned EC number0.63840.93100.6013yesN/A
P68373TBA1C_MOUSENo assigned EC number0.63840.93100.6013yesN/A
P68370TBA1A_RATNo assigned EC number0.63190.93100.5986yesN/A
Q68FR8TBA3_RATNo assigned EC number0.62210.93100.6yesN/A
P05214TBA3_MOUSENo assigned EC number0.62210.93100.6yesN/A
P06603TBA1_DROMENo assigned EC number0.62540.93100.6yesN/A
P06604TBA2_DROMENo assigned EC number0.62860.93100.6013yesN/A
P05213TBA1B_MOUSENo assigned EC number0.63510.93100.5986yesN/A
P91910TBA3_CAEELNo assigned EC number0.63190.93100.6yesN/A
P81947TBA1B_BOVINNo assigned EC number0.63510.93100.5986yesN/A
P81948TBA4A_BOVINNo assigned EC number0.63190.93100.6026yesN/A
Q9BQE3TBA1C_HUMANNo assigned EC number0.63840.93100.6013yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
cd02186 434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-174
PTZ00335 448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-162
PLN00221 450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-152
COG5023 443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-136
cd02187 425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-93
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 3e-84
PTZ00010 445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-82
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 6e-80
PLN00220 447 PLN00220, PLN00220, tubulin beta chain; Provisiona 8e-78
cd02188 431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 6e-64
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 3e-56
PTZ00387 465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 3e-54
cd02190 379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-52
PLN00222 454 PLN00222, PLN00222, tubulin gamma chain; Provision 2e-52
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 2e-45
cd02189 446 cd02189, delta_tubulin, The tubulin superfamily in 4e-33
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 1e-14
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 7e-08
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 2e-06
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  487 bits (1257), Expect = e-174
 Identities = 190/307 (61%), Positives = 227/307 (73%), Gaps = 37/307 (12%)

Query: 20  RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
           RE IS+H+GQAG+QIGNACWELYCLEHGI PDG    ++ +    D +  TFF ET +GK
Sbjct: 1   REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTI-GGGDDAFNTFFSETGSGK 59

Query: 80  VVPRGVMIDLEPSVIDEI------------------------------------IEETLD 103
            VPR V IDLEP+VIDE+                                    I+  LD
Sbjct: 60  HVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLD 119

Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
           R R+LAD+C+ LQGFL+FHSFGGGTGSGF SLLL +L  ++ KKS+L F +YPSP VST+
Sbjct: 120 RIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTA 179

Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
           VVEPYN+VL+THS L + DC+FM+DNEA YDIC+R L+IERP+Y NLNRLI+QVVSSITA
Sbjct: 180 VVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239

Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
           SLRFDGALNVDL EFQTNLVPYPRIHFPL +Y+PI+S  KAYHE ++VA+IT  CFEPAN
Sbjct: 240 SLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPAN 299

Query: 284 QMVKCNP 290
           QMVKC+P
Sbjct: 300 QMVKCDP 306

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 290
COG5023 443 Tubulin [Cytoskeleton] 100.0
PLN00221 450 tubulin alpha chain; Provisional 100.0
PTZ00335 448 tubulin alpha chain; Provisional 100.0
KOG1374|consensus 448 100.0
PLN00222 454 tubulin gamma chain; Provisional 100.0
cd02188 431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010 445 tubulin beta chain; Provisional 100.0
cd02186 434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387 465 epsilon tubulin; Provisional 100.0
cd02187 425 beta_tubulin The tubulin superfamily includes five 100.0
PLN00220 447 tubulin beta chain; Provisional 100.0
cd02189 446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190 379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376|consensus 407 100.0
cd06059 382 Tubulin The tubulin superfamily includes five dist 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
KOG1375|consensus 369 100.0
cd06060 493 misato Human Misato shows similarity with Tubulin/ 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.96
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.95
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.94
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.94
PRK13018378 cell division protein FtsZ; Provisional 99.93
KOG2530|consensus 483 99.92
PRK09330 384 cell division protein FtsZ; Validated 99.9
PF14881180 Tubulin_3: Tubulin domain 99.78
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.67
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 98.61
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 98.53
PF13809345 Tubulin_2: Tubulin like 97.52
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 96.77
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 84.76
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-92  Score=644.42  Aligned_cols=269  Identities=57%  Similarity=1.008  Sum_probs=261.6

Q ss_pred             ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165          19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI-   97 (290)
Q Consensus        19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i-   97 (290)
                      |||||+||+||||||||++||+++|+||||+++|++ .+..+  ..+++.++||+|++.||||||||+|||||+||+++ 
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~-~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~   77 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTL-LDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVR   77 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCC-CCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhc
Confidence            899999999999999999999999999999999987 55443  34689999999999999999999999999999987 


Q ss_pred             -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165          98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ  142 (290)
Q Consensus        98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d  142 (290)
                                                         .|.++|+|||++|.||.||||+++||+|||||||+|+.|+|+|++
T Consensus        78 ~g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~  157 (443)
T COG5023          78 NGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLRE  157 (443)
T ss_pred             cCccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHH
Confidence                                               899999999999999999999999999999999999999999999


Q ss_pred             hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165         143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT  222 (290)
Q Consensus       143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t  222 (290)
                      |||||.+.+|+|+|.++.++++|||||++|++++|.|++|+++++||++|+++|.+.|++++|+|.++|++||++++++|
T Consensus       158 eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvT  237 (443)
T COG5023         158 EYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVT  237 (443)
T ss_pred             hcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhh
Confidence            99999999999999998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165         223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP  290 (290)
Q Consensus       223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~  290 (290)
                      +++||||++|.||+++.+|||||||+||++++|+|+.+..+..+++.|+.|++++||+++|||++|||
T Consensus       238 tslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dp  305 (443)
T COG5023         238 TSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDP  305 (443)
T ss_pred             heeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999987

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
4drx_A 437 Gtp-Tubulin In Complex With A Darpin Length = 437 9e-96
3ryc_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 9e-96
4i4t_A 450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 9e-96
1sa0_A 451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 2e-95
3hkb_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-95
1z2b_A 448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-95
3du7_A 449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-95
1ffx_A 451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-94
2xrp_B 452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-94
1jff_A 451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 2e-94
1tub_A 440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-94
4ffb_A 447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 3e-85
4ffb_B 463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 2e-47
3du7_B 445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 5e-45
4f61_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 5e-45
1z2b_B 445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 6e-45
3ryc_B 445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 6e-45
4drx_B 431 Gtp-Tubulin In Complex With A Darpin Length = 431 6e-45
1tub_B 427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 7e-45
1ffx_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 8e-45
2xrp_A 445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 8e-45
4i4t_B 445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 8e-45
2btq_B 426 Structure Of Btubab Heterodimer From Prosthecobacte 4e-40
2bto_A 473 Structure Of Btuba From Prosthecobacter Dejongeii L 3e-36
1z5v_A 474 Crystal Structure Of Human Gamma-Tubulin Bound To G 8e-30
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 8e-30
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  346 bits (887), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 205/307 (66%), Gaps = 37/307 (12%)
Query: 20  RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
           RECIS+HVGQAGVQIGNACWELYCLEHGI PDG +   +  +   D S  TFF ET  GK
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80  VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
            VPR V +DLEP+VIDE                                    II+  LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
           R R+LAD C                          +L  ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
           VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLISQ+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
           SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S  KAYHE ++VA+IT  CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
           QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 1e-152
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-152
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 1e-151
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-148
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-146
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-09
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 1e-04
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
 Score =  432 bits (1113), Expect = e-152
 Identities = 101/308 (32%), Positives = 158/308 (51%), Gaps = 37/308 (12%)

Query: 20  RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
              I V +GQAG QI  + W+  CLEHGI P   +         +  S  +   E+ +G 
Sbjct: 4   NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 63

Query: 80  VVPRGVMIDLEPSVID-----------------------------------EIIEETLDR 104
            VPR +M+DLEPSVID                                   E++ E + R
Sbjct: 64  YVPRAIMVDLEPSVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSR 123

Query: 105 FRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSV 164
                D C ++ G ++ H+ GGGTGSGF +LL+  L++++ +   L   + PSP VS+ V
Sbjct: 124 LDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVV 183

Query: 165 VEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITAS 224
            EPYN V + ++   + D   + DNEA +D+  RK NIE P+ ++LN LI++ ++ ITAS
Sbjct: 184 TEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITAS 243

Query: 225 LRFDGALNVD--LTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPA 282
           +RF G L V+  L E  TNLVP P +HF +  ++P+    ++  E + + ++    F+  
Sbjct: 244 MRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNG 303

Query: 283 NQMVKCNP 290
           +    C+P
Sbjct: 304 SVFAACSP 311
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Length = 427 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1rq2_A 382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vaw_A 394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vxy_A 382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.97
4dxd_A 396 Cell division protein FTSZ; rossmann fold, GTPase, 99.97
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.97
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.68
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.3
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=6.1e-85  Score=629.22  Aligned_cols=271  Identities=72%  Similarity=1.225  Sum_probs=258.7

Q ss_pred             ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165          19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI-   97 (290)
Q Consensus        19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i-   97 (290)
                      |||||+||+||||||||++|||++|+||||++||++ +++++.+..++++++||+|+++|||+||||||||||+|||++ 
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~-~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~   79 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM-PSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR   79 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCC-CCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCc-CCcccccccccchhhhcccCCCCccccceeeecCCcchhheee
Confidence            899999999999999999999999999999999998 666544445789999999999999999999999999999988 


Q ss_pred             -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165          98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ  142 (290)
Q Consensus        98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d  142 (290)
                                                         .|+++|+|||++|+||.+|||+++||+|||||||+|++|+|.|++
T Consensus        80 ~g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~  159 (451)
T 3ryc_A           80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV  159 (451)
T ss_dssp             HSTTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHH
T ss_pred             ecccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHH
Confidence                                               899999999999999999999999999999999999999999999


Q ss_pred             hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165         143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT  222 (290)
Q Consensus       143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t  222 (290)
                      +||++.+++++|+|++..++.+++|||++|++++|.|++|+++++||++|+++|.+.+++..|+|+++|++||++++++|
T Consensus       160 ey~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT  239 (451)
T 3ryc_A          160 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT  239 (451)
T ss_dssp             HTTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             hcCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhcccccc
Confidence            99999999999999987889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165         223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP  290 (290)
Q Consensus       223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~  290 (290)
                      +++||||++|.|+.++.+|||||||+||++++|+|+++.++..++++|+.||++++|+++|+|++|||
T Consensus       240 ~slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp  307 (451)
T 3ryc_A          240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDP  307 (451)
T ss_dssp             HHHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCG
T ss_pred             cccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999986
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 290
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 2e-92
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 4e-91
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 3e-89
d1tuba2 195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 7e-27
d1tubb2 184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 1e-25
d2btoa2 180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 1e-22
d1w5fa1194 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Th 5e-04
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 5e-04
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  271 bits (695), Expect = 2e-92
 Identities = 143/245 (58%), Positives = 171/245 (69%), Gaps = 37/245 (15%)

Query: 20  RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
           RECIS+HVGQAGVQIGNACWELYCLEHGI PDG    ++ +    D S  TFF ET  GK
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI-GGGDDSFNTFFSETGAGK 60

Query: 80  VVPRGVMIDLEPSVIDEI------------------------------------IEETLD 103
            VPR V +DLEP+VIDE+                                    I+  LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
           R R+LAD C+ LQGF +FHSFGGGTGSGFTSLL+ +L  ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
           VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 224 SLRFD 228
           SLRFD
Sbjct: 241 SLRFD 245
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Length = 194 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.75
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.72
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.72
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.7
d1tuba2 195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.42
d1tubb2 184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.41
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6.1e-70  Score=486.05  Aligned_cols=209  Identities=68%  Similarity=1.173  Sum_probs=200.5

Q ss_pred             ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165          19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI-   97 (290)
Q Consensus        19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i-   97 (290)
                      |||||+||+||||||||++||+++++||+|++||+. ..++.....++++++||+|.++++|+||||+||+||+||+++ 
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~-~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~   79 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM-PSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR   79 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCC-SCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHS
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCc-cCccccccccccchhhhhcccCCccccceeEecCCcceeeeec
Confidence            999999999999999999999999999999999987 555544566788999999999999999999999999999988 


Q ss_pred             -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165          98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ  142 (290)
Q Consensus        98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d  142 (290)
                                                         .|+++|.|||++|+||++|||+++||++||||||+|++|+|.|+|
T Consensus        80 ~~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d  159 (245)
T d1tuba1          80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSV  159 (245)
T ss_dssp             GGGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHH
T ss_pred             cCcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHH
Confidence                                               999999999999999999999999999999999999999999999


Q ss_pred             hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165         143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT  222 (290)
Q Consensus       143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t  222 (290)
                      +||++.+++++|+|+...+++++||||++|++++|.+++|+++++||++|+++|.+.++++.|+|+++|++||+.++++|
T Consensus       160 ~yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls~~T  239 (245)
T d1tuba1         160 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT  239 (245)
T ss_dssp             HTTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHT
T ss_pred             hcccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999977789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy9165         223 ASLRFD  228 (290)
Q Consensus       223 ~~~rf~  228 (290)
                      +++||.
T Consensus       240 ~~~RF~  245 (245)
T d1tuba1         240 ASLRFD  245 (245)
T ss_dssp             TTTTSS
T ss_pred             hhccCC
Confidence            999994
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure