Psyllid ID: psy9185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MSNSDEQRQRGSGVIKENTSSMILVDSSDTEKLKTNPHLEILHNADLNFVKDESSSPSSSTLISSQCLPSSMTSGQISSSTLTVLHPMEYCYPPPPLSLPVLVEQSLVKYETPNTVTSTAPTPYSGANTTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVPSSTNTSYVYPLDDSCVDCGSAIGQWTQYAQR
Secondary Structure (PSIPRED)
ccccHHHHHHccccEEccccEEEEEcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccEEEEcccEEEEEccccccEEEEcccHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
msnsdeqrqrgsgvikentssmilvdssdteklktnphleilhnadlnfvkdessspssstlissqclpssmtsgqissstltvlhpmeycypppplslpvlveqslvkyetpntvtstaptpysganttrchrkisdserdyKKTACDRERTRMRDMNRAFDLLrnrlppckppgkklsKIESLRMAIRYIRHLQCLLeygpeyetilyssrsvvpsstntsyvyplddscvdcgsAIGQWTQYAQR
Flexible Loop (DISEMBL)
msnsdeqrqrgsgvikentssmilvDSSDTEKLKTNPHLEILHNADLNFVKDESSSPSSSTLISSQCLPSSMTSGQISSSTLTVLHPMEYCYPPPPLSLPVLVEQSLVKYEtpntvtstaptpysganttrchrkisdserdykktacdrertrmrdmnrafdllrnrlppckppgkklskiESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVPSSTNTSYVYPLDDSCVDCGSAIGQWTQYAQR
Low Complexity Region (SEG)
MSNSDEQRQRGSGVIKENTSSMILVDSSDTEKLKTNPHLEILHNADLNFVKDEssspssstlissqclpssmtsgqisssTLTVLHPMEYCYpppplslpvlveqslvKYETPNTVTSTAPTPYSGANTTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVPSSTNTSYVYPLDDSCVDCGSAIGQWTQYAQR
Disordered region (IsUnstruct)
****************************************IL***************************************LTVLHPMEYCYPPPPLSLPVLVEQSLVKYE*********************************************************************KIESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVPSSTNTSYVYPLDDSCVDCGSAIGQWTQY***
Disordered Region (DISOPRED)
*********************MILVDS**************************************************************************************************************************RERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCL**************************************************
Disordered Region (DISEMBL)
**************IKENTSSMILVDSSDTEKLKTNPHLEILHNADLNFV***************************SSSTLTVLHPMEYCYPPPPLSLPVLVEQSLVKYETPNTVTSTAPTPYSGANTTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVPSSTNTSYVYPLDDSCVDCGSAIGQWTQYAQR
Disordered Region (DISPRO)
***********SGVIKENTSSMILVDSSDTEKLKTNPHLEILHNADLNFVKDES****************************TVLHPMEYCYPPPPLSL***************************************************ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVPSST*TSYVYPLDDSCVDCGSAIGQWTQYA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNSDEQRQRGSGVIKENTSSMILVDSSDTEKLKTNPHLEILHNADLNFVKDESSSPSSSTLISSQCLPSSMTSGQISSSTLTVLHPMEYCYPPPPLSLPVLVEQSLVKYETPNTVTSTAPTPYSGANTTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVPSSTNTSYVYPLDDSCVDCGSAIGQWTQYAQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
O08574	370	Mesoderm posterior protei	yes	N/A	0.225	0.151	0.526	4e-09
Q0VG99	397	Mesoderm posterior protei	yes	N/A	0.294	0.183	0.432	1e-08
P97309	243	Mesoderm posterior protei	no	N/A	0.225	0.230	0.508	3e-08
Q9BRJ9	268	Mesoderm posterior protei	no	N/A	0.225	0.208	0.508	6e-08
P22980	324	Myoblast determination pr	no	N/A	0.411	0.314	0.351	9e-08
P70661	214	Neurogenin-3 OS=Mus muscu	no	N/A	0.318	0.369	0.418	1e-07
O09105	330	Neurogenic differentiatio	no	N/A	0.262	0.196	0.484	3e-06
Q9HD90	331	Neurogenic differentiatio	no	N/A	0.245	0.184	0.5	3e-06
Q6VNZ9	239	Myogenic factor 6 OS=Dani	no	N/A	0.258	0.267	0.441	4e-06
O88940	201	Musculin OS=Mus musculus	no	N/A	0.512	0.631	0.267	4e-06

>sp|O08574|MESP2_MOUSE Mesoderm posterior protein 2 OS=Mus musculus GN=Mesp2 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPP-CKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           +++A +RE+ RMR + RA   LR  LPP   P G+ L+KIE+LR+AIRYI HL  LL
Sbjct: 81  RQSASEREKLRMRTLARALQELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSALL 137

Transcription factor with important role in somitogenesis. Defines the rostrocaudal patterning of the somite by participating in distinct Notch pathways. Regulates also the FGF signaling pathway. Specifies the rostral half of the somites. Generates rostro-caudal polarity of somites by down-regulating in the presumptive rostral domain DLL1, a Notch ligand. Participates in the segment border formation by activating in the anterior presomitic mesoderm LFNG, a negative regulator of DLL1-Notch signaling. Acts as a strong suppressor of Notch activity. Together with MESP1 is involved in the epithelialization of somitic mesoderm and in the development of cardiac mesoderm. May play a role with Tcf15 in the differentiation of myotomal and sclerotomal cells by regulating Pax family genes. Controls also the expression of the protocadherin PCDH8/PAPC, EPHA4, RIPPLY2, NOTCH2, FGFR1, and CER1. Binds to the E-boxes within the EPH4A and RIPPLY2 enhancers.
Mus musculus (taxid: 10090)

>sp|Q0VG99|MESP2_HUMAN Mesoderm posterior protein 2 OS=Homo sapiens GN=MESP2 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 127 ANTTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPP-CKPPGKKLSKIESL 185
           A  T   R  +      +++A +RE+ RMR + RA   LR  LPP   P G+ L+KIE+L
Sbjct: 66  AAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETL 125

Query: 186 RMAIRYIRHLQCLL 199
           R+AIRYI HL  +L
Sbjct: 126 RLAIRYIGHLSAVL 139

Transcription factor with important role in somitogenesis. Defines the rostrocaudal patterning of the somite by participating in distinct Notch pathways. Regulates also the FGF signaling pathway. Specifies the rostral half of the somites. Generates rostro-caudal polarity of somites by down-regulating in the presumptive rostral domain DLL1, a Notch ligand. Participates in the segment border formation by activating in the anterior presomitic mesoderm LFNG, a negative regulator of DLL1-Notch signaling. Acts as a strong suppressor of Notch activity. Together with MESP1 is involved in the epithelialization of somitic mesoderm and in the development of cardiac mesoderm.

Homo sapiens (taxid: 9606)

>sp|P97309|MESP1_MOUSE Mesoderm posterior protein 1 OS=Mus musculus GN=Mesp1 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPP-CKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           +++A +RE+ RMR + RA   LR  LPP   P G+ L+KIE+LR+AIRYI HL  +L
Sbjct: 78  RQSASEREKLRMRTLARALHELRRFLPPSVAPTGQNLTKIETLRLAIRYIGHLSAVL 134

Transcription factor. Plays a role in the epithelialization of somitic mesoderm and in the development of cardiac mesoderm. Defines the rostrocaudal patterning of the somites by participating in distinct Notch pathways.

Mus musculus (taxid: 10090)

>sp|Q9BRJ9|MESP1_HUMAN Mesoderm posterior protein 1 OS=Homo sapiens GN=MESP1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPP-CKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           +++A +RE+ RMR + RA   LR  LPP   P G+ L+KIE+LR+AIRYI HL  +L
Sbjct: 84  RQSASEREKLRMRTLARALHELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAVL 140

Transcription factor. Plays a role in the epithelialization of somitic mesoderm and in the development of cardiac mesoderm. Defines the rostrocaudal patterning of the somites by participating in distinct Notch pathways.

Homo sapiens (taxid: 9606)

>sp|P22980|MYOD1_CAEEL Myoblast determination protein 1 homolog OS=Caenorhabditis elegans GN=hlh-1 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 102 LVEQSLVKYETPNTVTSTAPTPYSGANTTRCHRKISDSERDYKKTACDRERTRMRDMNRA 161
           L+ QS V  +  +T TSTA     GA      R       D +K A  RER R+R +N A
Sbjct: 119 LIIQSRVDSQHEDTTTSTA----GGAGVGGPRRTKFVLSVDRRKAATMRERRRLRKVNEA 174

Query: 162 FDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETIL 209
           F++++ R   C  P ++L K+E LR AI YI +L+ +L+   +   I+
Sbjct: 175 FEVVKQRT--CPNPNQRLPKVEILRSAIDYINNLERMLQQAGKMTKIM 220

Accumulation defines the body wall muscle cell fate during embryogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|P70661|NGN3_MOUSE Neurogenin-3 OS=Mus musculus GN=Neurog3 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 125 SGANTTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIES 184
            G N  +    +S   R  +K A DRER RM ++N A D LR  L P  P   KL+KIE+
Sbjct: 66  GGRNRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVL-PTFPDDAKLTKIET 124

Query: 185 LRMAIRYIRHLQCLLE------YGPE 204
           LR A  YI  L   L       YGPE
Sbjct: 125 LRFAHNYIWALTQTLRIADHSFYGPE 150

Acts as a transcriptional regulator. Together with NKX2-2, initiates transcriptional activation of NEUROD1. Involved in neurogenesis. Also required for the specification of a common precursor of the 4 pancreatic endocrine cell types.

Mus musculus (taxid: 10090)

>sp|O09105|NDF4_MOUSE Neurogenic differentiation factor 4 OS=Mus musculus GN=Neurod4 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200
           R  +  A  RERTRM  +N A D LR R+ PC    +KLSKIE+LR+A  YI  L  +LE
Sbjct: 86  RARRVKANARERTRMHGLNDALDNLR-RVMPCYSKTQKLSKIETLRLARNYIWALSEVLE 144

Query: 201 YGPEYE 206
            G   E
Sbjct: 145 TGQTLE 150

Probably acts as a transcriptional activator. Mediates neuronal differentiation. Required for the regulation of amacrine cell fate specification in the retina.

Mus musculus (taxid: 10090)

>sp|Q9HD90|NDF4_HUMAN Neurogenic differentiation factor 4 OS=Homo sapiens GN=NEUROD4 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200
           R  +  A  RERTRM  +N A D LR R+ PC    +KLSKIE+LR+A  YI  L  +LE
Sbjct: 86  RARRVKANARERTRMHGLNDALDNLR-RVMPCYSKTQKLSKIETLRLARNYIWALSEVLE 144

Query: 201 YG 202
            G
Sbjct: 145 TG 146

Probably acts as a transcriptional activator. Mediates neuronal differentiation. Required for the regulation of amacrine cell fate specification in the retina.

Homo sapiens (taxid: 9606)

>sp|Q6VNZ9|MYF6_DANRE Myogenic factor 6 OS=Danio rerio GN=myf6 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 132 CHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRY 191
           C RK + ++R  +K A  RER R++ +N AFD L+ +  P   P ++L K+E LR AI Y
Sbjct: 84  CKRKSAPTDR--RKAATLRERRRLKKINEAFDALKKKTVP--NPNQRLPKVEILRSAINY 139

Query: 192 IRHLQCLL 199
           I  LQ LL
Sbjct: 140 IEKLQDLL 147

Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Probable sequence specific DNA-binding protein.

Danio rerio (taxid: 7955)

>sp|O88940|MUSC_MOUSE Musculin OS=Mus musculus GN=Msc PE=1 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 34/161 (21%)

Query: 72  MTSGQISSSTLTVLHPMEYCYPPPPLSLPVLVEQSLVKYETPNTVTSTAPT-----PYSG 126
           M++G +S    + +  ++  YP P    P L+      Y +P+ ++S         P S 
Sbjct: 1   MSTGSVSDPEDSEMRGLQRVYPAPASKRPPLLRMER-GYGSPSDISSAEEEDGEEEPGSL 59

Query: 127 ANTTRCHRK---------------------------ISDSERDYKKTACDRERTRMRDMN 159
                C RK                            ++ ++  +  A  RER RMR ++
Sbjct: 60  GAAGGCKRKRLRGADAGGAGGRAGGAGKKPLPPKGSAAECKQSQRNAANARERARMRVLS 119

Query: 160 RAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200
           +AF  L+  LP   PP  KLSK+++LR+A  YI HL+ LL+
Sbjct: 120 KAFSRLKTSLP-WVPPDTKLSKLDTLRLASSYIAHLRQLLQ 159

Transcription repressor that blocks myogenesis and activation of E-box dependent muscle genes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
328696800	240	PREDICTED: myogenic factor 6-like [Acyrt	0.318	0.329	0.831	1e-31
340717970	276	PREDICTED: hypothetical protein LOC10064	0.383	0.344	0.64	1e-24
321474125	565	hypothetical protein DAPPUDRAFT_222754 [	0.306	0.134	0.7	3e-23
242017291	251	conserved hypothetical protein [Pediculu	0.407	0.402	0.537	9e-23
195062140	298	GH13982 [Drosophila grimshawi] gi|193891	0.649	0.540	0.430	1e-21
383855130	248	PREDICTED: uncharacterized protein LOC10	0.258	0.258	0.787	2e-21
195453304	316	GK12985 [Drosophila willistoni] gi|19416	0.241	0.189	0.766	1e-20
195394549	308	GJ10515 [Drosophila virilis] gi|19414261	0.306	0.246	0.641	3e-20
347969660	436	AGAP013335-PA [Anopheles gambiae str. PE	0.274	0.155	0.705	3e-20
195330472	266	GM26275 [Drosophila sechellia] gi|194120	0.241	0.225	0.766	3e-20

>gi|328696800|ref|XP_001948879.2| PREDICTED: myogenic factor 6-like [Acyrthosiphon pisum]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 74/83 (89%), Gaps = 4/83 (4%)

Query: 138 DSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQC 197
           +SERDYKK+ACDRERTRMRDMN+AFDLLRNRLP  KPPGKKLSKIESLRMAIRYIRHLQ 
Sbjct: 128 ESERDYKKSACDRERTRMRDMNKAFDLLRNRLPKSKPPGKKLSKIESLRMAIRYIRHLQA 187

Query: 198 LLEYGPEYETILYSSRSVVPSST 220
           +LEYGPEYET LY+    VPS T
Sbjct: 188 ILEYGPEYETKLYT----VPSCT 206

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717970|ref|XP_003397446.1| PREDICTED: hypothetical protein LOC100643488 [Bombus terrestris]

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 73/100 (73%), Gaps = 5/100 (5%)

Query: 128 NTTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRM 187
           N     R+ S +E+DYKK+ACDRERTRMRDMNRAF+LLR++LP CKPPGKKLSKIESLR 
Sbjct: 124 NIKSIQREPSQTEKDYKKSACDRERTRMRDMNRAFELLRSKLPICKPPGKKLSKIESLRH 183

Query: 188 AIRYIRHLQCLLE----YGPEYETILYSSRSVVPSSTNTS 223
           AI YIRHLQ LLE    Y P      Y + S  P +TNTS
Sbjct: 184 AITYIRHLQSLLEPQYSYPPNVSERSYYANS-APITTNTS 222

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321474125|gb|EFX85091.1| hypothetical protein DAPPUDRAFT_222754 [Daphnia pulex]

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 4/80 (5%)

Query: 128 NTTRCHRKISDS----ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIE 183
           N +RC R  + S    E+DYKK+ACDRERTRMRDMNRAFD LR +LP  KPPGKKLSKIE
Sbjct: 379 NPSRCWRGSNSSRAQYEKDYKKSACDRERTRMRDMNRAFDSLREKLPYIKPPGKKLSKIE 438

Query: 184 SLRMAIRYIRHLQCLLEYGP 203
           SLR+AI+YIRHLQ LL   P
Sbjct: 439 SLRLAIKYIRHLQFLLASPP 458

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017291|ref|XP_002429125.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513989|gb|EEB16387.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 72/108 (66%), Gaps = 7/108 (6%)

Query: 97  LSLPVLVEQSLVKYETPNTVTSTAPTPYSGANTTRCHRKISDSERDYKKTACDRERTRMR 156
           L++P  ++  +       T+ ++ P P             S  ERDYKK+ACDRERTRMR
Sbjct: 64  LTVPCEIKMFVEDLSKNETIITSIPNP-------AWKEAASQLERDYKKSACDRERTRMR 116

Query: 157 DMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPE 204
           DMNRAFDLLR +LP  K PGKKLSKIE+LR++IRYIRHLQ LLE  P+
Sbjct: 117 DMNRAFDLLRAKLPVTKSPGKKLSKIEALRLSIRYIRHLQSLLEEPPQ 164

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195062140|ref|XP_001996141.1| GH13982 [Drosophila grimshawi] gi|193891933|gb|EDV90799.1| GH13982 [Drosophila grimshawi]

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 100/181 (55%), Gaps = 20/181 (11%)

Query: 55  SSPSSSTLISSQCLPSSMT--SGQISSSTLTVLHPMEYCYP-PPPLSLPVLVEQSLVKYE 111
           SSP +  L  +Q L SS    S Q     L+V+    Y    P  +S+      +L++ +
Sbjct: 65  SSPHAHNLSYAQSLLSSYEKHSQQHPHHNLSVIGSSGYSISIPQTVSMWHEGRGALIEPK 124

Query: 112 TPNTVTSTAPT--PYSGANTTR----------CHRKISDSERDYKKTACDRERTRMRDMN 159
            P+ V+   PT   YSG N                K    E+DY++TACDRERTRMRDMN
Sbjct: 125 RPDLVSVPPPTYMSYSGGNAIELDIAKEQNPAWREKAIQMEKDYRRTACDRERTRMRDMN 184

Query: 160 RAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG---PEYETILY--SSRS 214
           +AFDLLR++LP  KP GKK SKIESLR+AI YI HLQ +L      PE E + +  SSRS
Sbjct: 185 KAFDLLRSKLPISKPNGKKYSKIESLRIAINYINHLQAMLRDNHTLPETELVSFRCSSRS 244

Query: 215 V 215
           V
Sbjct: 245 V 245

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855130|ref|XP_003703071.1| PREDICTED: uncharacterized protein LOC100875375 [Megachile rotundata]

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 58/66 (87%), Gaps = 2/66 (3%)

Query: 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202
           YKK+ACDRERTRMRDMNRAF+LLR++LP CKPPGKKLSKIESLR AI YIRHLQ LLE  
Sbjct: 111 YKKSACDRERTRMRDMNRAFELLRSKLPICKPPGKKLSKIESLRHAITYIRHLQSLLE-- 168

Query: 203 PEYETI 208
           P+Y  +
Sbjct: 169 PQYSYV 174

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453304|ref|XP_002073729.1| GK12985 [Drosophila willistoni] gi|194169814|gb|EDW84715.1| GK12985 [Drosophila willistoni]

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 53/60 (88%)

Query: 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           E+DY++TACDRERTRMRDMNRAFDLLR++LP  KP GKK SKIESLR+AI YI HLQ +L
Sbjct: 176 EKDYRRTACDRERTRMRDMNRAFDLLRSKLPISKPNGKKYSKIESLRIAINYINHLQAML 235

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195394549|ref|XP_002055905.1| GJ10515 [Drosophila virilis] gi|194142614|gb|EDW59017.1| GJ10515 [Drosophila virilis]

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 63/81 (77%), Gaps = 5/81 (6%)

Query: 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           E+DY++TACDRERTRMRDMN+AFDLLR++LP  KP GKK SKIESLR+AI YI HLQ +L
Sbjct: 175 EKDYRRTACDRERTRMRDMNKAFDLLRSKLPISKPNGKKYSKIESLRIAINYINHLQAML 234

Query: 200 EYG---PEYETILY--SSRSV 215
                 PE E + +  SSRS+
Sbjct: 235 RENHVLPETELVSFKCSSRSL 255

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969660|ref|XP_003436440.1| AGAP013335-PA [Anopheles gambiae str. PEST] gi|333469672|gb|EGK97373.1| AGAP013335-PA [Anopheles gambiae str. PEST]

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 134 RKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIR 193
           ++  + E+DYKK+ACDRERTRMRDMNRAFD+LR++LP  KP GKK SKIE LR+AI+YIR
Sbjct: 263 KRAMEIEKDYKKSACDRERTRMRDMNRAFDMLRSKLPNKKPSGKKYSKIECLRVAIQYIR 322

Query: 194 HLQCLLEY 201
           HLQ  LEY
Sbjct: 323 HLQRELEY 330

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330472|ref|XP_002031927.1| GM26275 [Drosophila sechellia] gi|194120870|gb|EDW42913.1| GM26275 [Drosophila sechellia]

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 53/60 (88%)

Query: 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           E+DY++TACDRERTRMRDMNRAFDLLR++LP  KP GKK SKIESLR+AI YI HLQ +L
Sbjct: 175 EKDYRRTACDRERTRMRDMNRAFDLLRSKLPISKPNGKKYSKIESLRIAINYINHLQAML 234

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
FB|FBgn0037672	268	sage "salivary gland-expressed	0.262	0.242	0.723	1e-20
UNIPROTKB|F1P3S4	323	LOC100858087 "Uncharacterized	0.419	0.321	0.379	1.6e-10
ZFIN|ZDB-GENE-000616-6	254	myf5 "myogenic factor 5" [Dani	0.423	0.413	0.384	1.5e-08
UNIPROTKB|J9NRP1	173	ASCL4 "Uncharacterized protein	0.294	0.421	0.418	2e-08
WB|WBGene00001958	246	hlh-14 [Caenorhabditis elegans	0.326	0.329	0.378	2.7e-08
FB|FBgn0053557	150	CG33557 [Drosophila melanogast	0.262	0.433	0.449	4.4e-08
UNIPROTKB|F1NMI5	147	ASCL4 "Uncharacterized protein	0.217	0.367	0.490	7.8e-08
UNIPROTKB|F1SK05	256	MESP1 "Uncharacterized protein	0.245	0.238	0.483	8.9e-08
ZFIN|ZDB-GENE-090817-2	256	mespab "mesoderm posterior ab"	0.254	0.246	0.469	8.9e-08
RGD|1305959	368	Mesp2 "mesoderm posterior 2 ho	0.225	0.152	0.526	1.2e-07

FB|FBgn0037672 sage "salivary gland-expressed bHLH" [Drosophila melanogaster (taxid:7227)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 47/65 (72%), Positives = 54/65 (83%)

Query:   135 KISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRH 194
             K    E+DY++TACDRERTRMRDMNRAFDLLR++LP  KP GKK SKIESLR+AI YI H
Sbjct:   172 KALQMEKDYRRTACDRERTRMRDMNRAFDLLRSKLPISKPNGKKYSKIESLRIAINYINH 231

Query:   195 LQCLL 199
             LQ +L
Sbjct:   232 LQAML 236

GO:0005634 "nucleus" evidence=IC

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|F1P3S4 LOC100858087 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 44/116 (37%), Positives = 60/116 (51%)

Query:   111 ETPNTVTSTAPT----PYSGANTTRCH----RKISDSERDYKKTACDRERTRMRDMNRAF 162
             + P T + T P     P SGA   RC     R+ S      +++A +RE+ RMR + +A 
Sbjct:    12 QAPTTASLTPPRELCRPGSGAGLRRCGGPAGRRGSGVAGGPRQSASEREKLRMRRLAQAM 71

Query:   163 DLLRNRLPPC-KPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETILYSSRSVVP 217
               LR+ LPP   P G+ L+KIE+LR+A RYI HL  LL    E   +L   R   P
Sbjct:    72 HRLRHYLPPTLAPAGQSLTKIETLRLATRYIAHLSALLGLSEE---VLLLRRGAAP 124

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-000616-6 myf5 "myogenic factor 5" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 45/117 (38%), Positives = 63/117 (53%)

Query:   132 CHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRY 191
             C RK S  +R  ++ A  RER R++ +N AF+ LR R     P  ++L K+E LR AI+Y
Sbjct:    76 CKRKASTVDR--RRAATMRERRRLKKVNHAFEALR-RCTSANP-SQRLPKVEILRNAIQY 131

Query:   192 IRHLQCLL-EYGPEYETILYSSRSVVPSSTNTSYVYPLDDSCVDCGSAIGQWTQYAQ 247
             I  LQ LL E    Y ++   S S  P+S ++S      +S VDC S +  W Q  Q
Sbjct:   132 IESLQELLREQVENYYSLPMESSSE-PASPSSS----CSESMVDCNSPV--WPQMNQ 181

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA;IGI

GO:0043282 "pharyngeal muscle development" evidence=IMP

GO:0002074 "extraocular skeletal muscle development" evidence=IMP

GO:0048741 "skeletal muscle fiber development" evidence=IGI

GO:0055002 "striated muscle cell development" evidence=IGI

GO:0007519 "skeletal muscle tissue development" evidence=IGI;IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

UNIPROTKB|J9NRP1 ASCL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query:   149 DRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETI 208
             +RER R+R +N  +  LR+ LP  +   ++LSK+E+LR AIRYIRHLQ LLE     +  
Sbjct:    80 ERERQRVRGVNEGYARLRDHLPR-ELAQRRLSKVETLRAAIRYIRHLQELLERQARAQDG 138

Query:   209 LYSSRSVVPSSTNT 222
               ++R+  P+  N+
Sbjct:   139 PAAARTPRPADCNS 152

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

WB|WBGene00001958 hlh-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 140 (54.3 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 31/82 (37%), Positives = 49/82 (59%)

Query:   149 DRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETI 208
             +RER R+  +N  FD+LRNRL P K   KK SK ++LR A++YI+ LQ LL   P+  ++
Sbjct:   109 ERERKRVHQVNHGFDVLRNRLQP-KNHTKKWSKADTLREAVKYIQQLQVLLNQDPQQPSV 167

Query:   209 LYSSRSVVPSSTNTSYVYPLDD 230
               S+     +++N    Y + +
Sbjct:   168 SSSTPDYTMNNSNNFNNYAVKE 189

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0014018 "neuroblast fate specification" evidence=IGI;IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009786 "regulation of asymmetric cell division" evidence=IMP

GO:0045664 "regulation of neuron differentiation" evidence=IGI;IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000003 "reproduction" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=ISS

FB|FBgn0053557 CG33557 [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 31/69 (44%), Positives = 41/69 (59%)

Query:   150 RERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETIL 209
             RER R  ++N A++ LRN L P +P  +KLSKIE +R+A  YI HL   LE G E +  L
Sbjct:    69 RERYRTFNVNSAYEALRN-LIPTEPMNRKLSKIEIIRLASSYITHLSSTLETGTECQPCL 127

Query:   210 ---YSSRSV 215
                Y S  +
Sbjct:   128 LHKYESEGI 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IC

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1NMI5 ASCL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query:   149 DRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGP 203
             +RER R+R +N  +  LR  LP  +   K+LSK+E+LR AI YI+HLQ LL+  P
Sbjct:    56 ERERQRVRCVNEGYTRLREHLPK-EFADKRLSKVETLRAAINYIKHLQSLLDCHP 109

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1SK05 MESP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 8.9e-08, P = 8.9e-08
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query:   144 KKTACDRERTRMRDMNRAFDLLRNRLPPC-KPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202
             +++A +RE+ RMR + RA   LR  LPP   P G+ L+KIE+LR+AIRYI HL  +L   
Sbjct:    84 RQSASEREKLRMRTLARALHQLRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAVLGLS 143

Query:   203 PE 204
              E
Sbjct:   144 EE 145

GO:0090082 "positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0070368 "positive regulation of hepatocyte differentiation" evidence=IEA

GO:0060975 "cardioblast migration to the midline involved in heart field formation" evidence=IEA

GO:0060947 "cardiac vascular smooth muscle cell differentiation" evidence=IEA

GO:0060921 "sinoatrial node cell differentiation" evidence=IEA

GO:0060913 "cardiac cell fate determination" evidence=IEA

GO:0051155 "positive regulation of striated muscle cell differentiation" evidence=IEA

GO:0048368 "lateral mesoderm development" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045446 "endothelial cell differentiation" evidence=IEA

GO:0042664 "negative regulation of endodermal cell fate specification" evidence=IEA

GO:0042662 "negative regulation of mesodermal cell fate specification" evidence=IEA

GO:0035481 "positive regulation of Notch signaling pathway involved in heart induction" evidence=IEA

GO:0035326 "enhancer binding" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0022008 "neurogenesis" evidence=IEA

GO:0008078 "mesodermal cell migration" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003259 "cardioblast anterior-lateral migration" evidence=IEA

GO:0003241 "growth involved in heart morphogenesis" evidence=IEA

GO:0003236 "sinus venosus morphogenesis" evidence=IEA

GO:0003211 "cardiac ventricle formation" evidence=IEA

GO:0003210 "cardiac atrium formation" evidence=IEA

GO:0003139 "secondary heart field specification" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-090817-2 mespab "mesoderm posterior ab" [Danio rerio (taxid:7955)]

 Score = 137 (53.3 bits), Expect = 8.9e-08, P = 8.9e-08
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query:   144 KKTACDRERTRMRDMNRAFDLLRNRLPPC-KPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202
             +++A +RE+ RMRD+ +A   LR+ LPP   P G+ L+KIE+LR+AI YI HL   L   
Sbjct:   108 RQSASEREKLRMRDLTKALHHLRSFLPPSVAPAGQTLTKIETLRLAISYISHLSDQLRQA 167

Query:   203 --PEYE 206
               P YE
Sbjct:   168 EVPNYE 173

GO:0046983 "protein dimerization activity" evidence=IEA

RGD|1305959 Mesp2 "mesoderm posterior 2 homolog (mouse)" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query:   144 KKTACDRERTRMRDMNRAFDLLRNRLPPC-KPPGKKLSKIESLRMAIRYIRHLQCLL 199
             +++A +RE+ RMR + RA   LR  LPP   P G+ L+KIE+LR+AIRYI HL  LL
Sbjct:    83 RQSASEREKLRMRTLARALQELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSALL 139

GO:0001756 "somitogenesis" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0007219 "Notch signaling pathway" evidence=IEA;ISO

GO:0008078 "mesodermal cell migration" evidence=IEA;ISO

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	248
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	6e-18
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-17
smart00353	53	smart00353, HLH, helix loop helix domain	2e-16

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 74.4 bits (184), Expect = 6e-18
 Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
            +K   +RER R   +N AF+ LR  LP   PP KKLSK E LR+AI YI+HLQ
Sbjct: 1   RRKAHNERERRRRDRINDAFEELRELLPT--PPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 72.2 bits (178), Expect = 5e-17
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199
            +  ++    RER R   +N AFD LR+ LP   PP KKLSK E LR A+ YI+ LQ LL
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTL-PPSKKLSKAEILRKAVDYIKSLQELL 59

Query: 200 E 200
           +
Sbjct: 60  Q 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 70.7 bits (174), Expect = 2e-16
 Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 150 RERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200
           RER R R +N AFD LR+ LP   P  KKLSK E LR+AI YI+ LQ  L+
Sbjct: 3   RERRRRRKINEAFDELRSLLPTL-PKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG3960|consensus	284		99.73
KOG4029|consensus	228		99.68
KOG3898|consensus	254		99.58
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.45
KOG4395|consensus	285		99.38
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.35
smart00353	53	HLH helix loop helix domain.	99.26
KOG0561|consensus	373		99.13
KOG4447|consensus	173		99.11
KOG3910|consensus	632		98.9
KOG1319|consensus	229		98.29
KOG1318|consensus	411		98.23
KOG2483|consensus	232		97.62
KOG2588|consensus	953		97.11
KOG4304|consensus	250		97.06
KOG3561|consensus	803		96.55
KOG4447|consensus	173		96.39
PF01056	329	Myc_N: Myc amino-terminal region; InterPro: IPR012	93.35
PLN03217	93	transcription factor ATBS1; Provisional	93.07
KOG3558|consensus	768		87.88

>KOG3960|consensus

Probab=99.73  E-value=1e-17  Score=151.78  Aligned_cols=77  Identities=42%  Similarity=0.640  Sum_probs=67.2

Q ss_pred             cccccCCCCccchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy9185         129 TTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETI  208 (248)
Q Consensus       129 ~~r~~r~~~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~~~~  208 (248)
                      ++-|||+...  .+||++|.+|||+|++.||+||+.|+++  ++..++++|.||||||.||+||..|+.||++....+..
T Consensus       106 ckackrks~s--vDRRKAATMRERRRLkKVNEAFE~LKRr--T~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~  181 (284)
T KOG3960|consen  106 CKACKRKSTS--VDRRKAATMRERRRLKKVNEAFETLKRR--TSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKG  181 (284)
T ss_pred             hhhccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence            6788887654  5799999999999999999999999999  44578999999999999999999999999998655543


Q ss_pred             c
Q psy9185         209 L  209 (248)
Q Consensus       209 ~  209 (248)
                      +
T Consensus       182 ~  182 (284)
T KOG3960|consen  182 L  182 (284)
T ss_pred             h
Confidence            3

>KOG4029|consensus

Probab=99.68  E-value=4.7e-17  Score=143.88  Aligned_cols=64  Identities=44%  Similarity=0.649  Sum_probs=58.9

Q ss_pred             chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9185         140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPP-GKKLSKIESLRMAIRYIRHLQCLLEYGPE  204 (248)
Q Consensus       140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~-~kKLSKietLr~Ai~YI~~L~~lL~~~~~  204 (248)
                      ...+|.++|+|||+||+.||.||+.||.+||. .+. ++|||||+|||+||.||.+|++||+.+..
T Consensus       106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~-~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~  170 (228)
T KOG4029|consen  106 TSAQRQARNARERQRVQSVNSAFAELRALLPT-EPPQSKKLSKVETLRLATSYIRYLTKLLATQEA  170 (228)
T ss_pred             hhhhhhhhhhhhhhcccchhhhhHHHHhcCCC-CCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence            34578899999999999999999999999995 666 99999999999999999999999999863

>KOG3898|consensus

Probab=99.58  E-value=7.9e-16  Score=139.45  Aligned_cols=65  Identities=43%  Similarity=0.510  Sum_probs=59.7

Q ss_pred             cchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9185         139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPE  204 (248)
Q Consensus       139 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~  204 (248)
                      ..+.||.++|+|||+|||+||+|||.||++||. ...+.||+|||||++|.+||..|+.++..+..
T Consensus        68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~-~~~~~klskIetl~~a~~yi~als~~~ls~~~  132 (254)
T KOG3898|consen   68 ALTLRRLKANARERTRMHDLNDALDALREVIPH-GLHPPKLSKIETLRLAANYIAALSEVLLSGIA  132 (254)
T ss_pred             hhhhhcccccchhhccccchhHHHHHhHhhccC-cCCCCCCCcchhHHhhhcchhhhccccccCCC
Confidence            346789999999999999999999999999995 67899999999999999999999998887753

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.45  E-value=2.5e-13  Score=95.36  Aligned_cols=54  Identities=43%  Similarity=0.669  Sum_probs=49.2

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCCHHHHHHHHHHHHHHHH
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPC-KPPGKKLSKIESLRMAIRYIRHLQ  196 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~-~~~~kKLSKietLr~Ai~YI~~L~  196 (248)
                      +|..+|.+||.|+..||.+|+.|+.+||.+ .....|++|++||+.||+||..|+
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            578899999999999999999999999963 136789999999999999999996

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG4395|consensus

Probab=99.38  E-value=4.9e-13  Score=121.69  Aligned_cols=63  Identities=44%  Similarity=0.579  Sum_probs=58.2

Q ss_pred             chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy9185         140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGP  203 (248)
Q Consensus       140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~  203 (248)
                      ...||.+||+|||+||+.||.|||.||.+|| ....++||||.|||++|..||..|..+|+...
T Consensus       171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p-~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~  233 (285)
T KOG4395|consen  171 NSHRRLAANARERRRMNGLNSAFDRLRLVVP-DGDSDKKLSKYETLQMAQGYILALGCLLDLPM  233 (285)
T ss_pred             HHhhhcccchHHHHHhhhHHHHHHHHHHhcC-CCCccchhhhhhHHHHHHHHHhhhHHhhcCcc
Confidence            4468899999999999999999999999999 56789999999999999999999999997764

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.35  E-value=4.3e-12  Score=89.07  Aligned_cols=57  Identities=51%  Similarity=0.688  Sum_probs=51.8

Q ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9185         142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL  199 (248)
Q Consensus       142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL  199 (248)
                      .+|..+|.+||.|+..||.+|+.|+..||. .....|++|+.||..|++||..|+..+
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~-~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPT-LPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            367789999999999999999999999995 335899999999999999999999865

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.26  E-value=2.3e-11  Score=84.03  Aligned_cols=52  Identities=56%  Similarity=0.754  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185         148 CDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE  200 (248)
Q Consensus       148 N~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~  200 (248)
                      |.+||.|+..||.+|+.|+..||.. ....|++|+.||..|++||..|+..++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~-~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTL-PNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999953 368999999999999999999998765

>KOG0561|consensus

Probab=99.13  E-value=9.5e-11  Score=109.34  Aligned_cols=56  Identities=38%  Similarity=0.542  Sum_probs=51.4

Q ss_pred             chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9185         140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQC  197 (248)
Q Consensus       140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~  197 (248)
                      ++.||..||..||+||+.||.+|..||.+||.  -.+.||||..||+...+||..|+.
T Consensus        57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr--~eGEKLSKAAILQQTa~yI~~Le~  112 (373)
T KOG0561|consen   57 RRMRREIANSNERRRMQSINAGFQSLRALLPR--KEGEKLSKAAILQQTADYIHQLEG  112 (373)
T ss_pred             HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCc--ccchhhHHHHHHHHHHHHHHHHHh
Confidence            45688899999999999999999999999996  458999999999999999999874

>KOG4447|consensus

Probab=99.11  E-value=3.8e-11  Score=102.69  Aligned_cols=65  Identities=38%  Similarity=0.581  Sum_probs=58.3

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYET  207 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~~~  207 (248)
                      +.+|.-||.|||+|-++||+||..||+.||+ . +..|||||.||++|..||.+|..+|..+...+.
T Consensus        76 q~qrv~anvrerqRtqsLn~AF~~lr~iipt-l-PsdklSkiqtLklA~ryidfl~~vl~s~l~~~~  140 (173)
T KOG4447|consen   76 QKQRVMANVRERQRTQSLNEAFAALRKIIPT-L-PSDKLSKIQTLKLAARYIDFLYQVLQSDLELDP  140 (173)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhcCC-C-CccccccccchhhcccCCchhhhcccccccccc
Confidence            4578899999999999999999999999996 3 478999999999999999999999998854443

>KOG3910|consensus

Probab=98.90  E-value=5.2e-09  Score=102.89  Aligned_cols=64  Identities=27%  Similarity=0.295  Sum_probs=58.2

Q ss_pred             cchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       139 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      .+++||.+.|+|||-|+++||+||.+|-+.+-.....+|--+|+-||.+|+.-|..|++.+++-
T Consensus       522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999887744567899999999999999999999999875

>KOG1319|consensus

Probab=98.29  E-value=1.2e-06  Score=77.70  Aligned_cols=60  Identities=27%  Similarity=0.429  Sum_probs=51.8

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPG---KKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~---kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      ||.++..-||+|..-||.+++.|+.+||.+.+.+   .||||.-||+.||+||.+|..-....
T Consensus        62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kq  124 (229)
T KOG1319|consen   62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQ  124 (229)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888899999999999999999999876543   69999999999999999997655443

>KOG1318|consensus

Probab=98.23  E-value=1.6e-05  Score=77.26  Aligned_cols=62  Identities=27%  Similarity=0.393  Sum_probs=55.6

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      +.||..+|+=||+|.-+||+...+|..+||.+...+-|+.|--||+.+++||..|++.++..
T Consensus       231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~  292 (411)
T KOG1318|consen  231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA  292 (411)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            34566799999999999999999999999987777889999999999999999999988844

>KOG2483|consensus

Probab=97.62  E-value=0.00022  Score=64.73  Aligned_cols=61  Identities=18%  Similarity=0.245  Sum_probs=51.2

Q ss_pred             chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHhcC
Q psy9185         140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLS-KIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLS-KietLr~Ai~YI~~L~~lL~~~  202 (248)
                      ....|..+|+-||+|...|.++|+.||..||. .. +.+-+ -+.||+.|..||..|+......
T Consensus        56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~-~~-~~~~~t~lsiL~kA~~~i~~l~~~~~~~  117 (232)
T KOG2483|consen   56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPL-LN-GETRSTTLSILDKALEHIQSLERKSATQ  117 (232)
T ss_pred             CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCC-CC-CcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence            34578899999999999999999999999995 43 44444 8999999999999998765543

>KOG2588|consensus

Probab=97.11  E-value=0.0018  Score=68.41  Aligned_cols=58  Identities=26%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      .+|.++|.-|++=..+||+-..+||..||   +..-||.|-++||.||+||..|+......
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~---g~~aKl~kSavLr~ai~~i~dl~~~nq~l  332 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVP---GTEAKLNKSAVLRKAIDYIEDLQGYNQKL  332 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcC---ccHhhhhhhhhHHHHHHHHHHhhcccccc
Confidence            68999999999999999999999999999   34789999999999999999998754433

>KOG4304|consensus

Probab=97.06  E-value=0.00058  Score=62.53  Aligned_cols=58  Identities=26%  Similarity=0.338  Sum_probs=48.4

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPG----KKLSKIESLRMAIRYIRHLQCLLE  200 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~----kKLSKietLr~Ai~YI~~L~~lL~  200 (248)
                      |+..+-.-||+|..-||.++++||.+||.+.-.+    .||-|.+||.++.+|.+.|+..-.
T Consensus        32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            4455678899999999999999999999544222    799999999999999999987433

>KOG3561|consensus

Probab=96.55  E-value=0.0037  Score=65.43  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCL  198 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~l  198 (248)
                      .|..+|.-||+|...+|.=.++|-.+||.+..-.+|+-|..|||+|+..|+.+..+
T Consensus        20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            47789999999999999999999999998766789999999999999999998885

>KOG4447|consensus

Probab=96.39  E-value=0.0018  Score=56.10  Aligned_cols=56  Identities=27%  Similarity=0.322  Sum_probs=47.3

Q ss_pred             HhhHhhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185         143 YKKTACDR-ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE  200 (248)
Q Consensus       143 rR~~aN~R-ER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~  200 (248)
                      .+.-+|.| ||.|-+.+|++|..|+.++|-  .+..+.+|+.+|+.|..||..|.++-.
T Consensus        21 ~~~~~r~~~e~~R~~~ls~~s~l~g~l~pg--spa~gk~~~ktlr~~~~~~~~~dE~q~   77 (173)
T KOG4447|consen   21 EEECDRQRKERGRKRRLSDASTLLGKLEPG--SPADGKRGKKTLRIGTDSIQSLDELQK   77 (173)
T ss_pred             hhhhhhhHHHHhHHhhhhhhhhhccccCCC--CCCcccccccccccCCCchhhHHHHHH
Confidence            44455666 999999999999999999994  346788999999999999999988644

>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain

Probab=93.35  E-value=0.024  Score=54.07  Aligned_cols=46  Identities=13%  Similarity=0.062  Sum_probs=0.0

Q ss_pred             ccccCCCceecccCCCCCCcc-cCCC---------CCCCCCCCCCcCCccccccCCC
Q psy9185          42 LHNADLNFVKDESSSPSSSTL-ISSQ---------CLPSSMTSGQISSSTLTVLHPM   88 (248)
Q Consensus        42 ~~~~~~~~vt~~~sspsss~~-~ss~---------~s~s~~ts~~~s~s~~~~~~~~   88 (248)
                      -.+||||||||+++.+.+... .+..         -++-..-+-+.++. ||||+|+
T Consensus       239 eeeEEIDVVTVEkr~~~~~~~~~~t~~~t~~~r~~~~~l~lKRchv~ih-QHNYAAp  294 (329)
T PF01056_consen  239 EEEEEIDVVTVEKRQSSSRRKPSTTFTVTITSRAQPSPLILKRCHVSIH-QHNYAAP  294 (329)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCCcceEEEEeeeccccCccccccccccccccccCCCCccceeeeeeec-cccccCC
Confidence            458999999999987643311 1110         01112233344665 9999997

The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.

>PLN03217 transcription factor ATBS1; Provisional

Probab=93.07  E-value=0.2  Score=39.83  Aligned_cols=48  Identities=23%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhhCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         155 MRDMNRAFDLLRNRLPPCK--PPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       155 m~~lN~AF~~LR~~LP~~~--~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      -.+||+-..+|+.+||...  ....|.|-.++|+.+|+||..|..-+++-
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL   68 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL   68 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999532  23568899999999999999998776654

>KOG3558|consensus

Probab=87.88  E-value=0.65  Score=48.48  Aligned_cols=52  Identities=29%  Similarity=0.395  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         150 RERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       150 RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      --|.|..+=|.-|.+|.++||-...-.-.|-|+.|+|+||.|.+ |.+++...
T Consensus        53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk~a~~g  104 (768)
T KOG3558|consen   53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRKFAGAG  104 (768)
T ss_pred             hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHHHhhcC
Confidence            34567888899999999999943345789999999999999976 45555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
1mdy_B	62	Crystal Structure Of Myod Bhlh Domain Bound To Dna:		2e-05
2ql2_B	60	Crystal Structure Of The Basic-Helix-Loop-Helix Dom		2e-05
1mdy_A	68	Crystal Structure Of Myod Bhlh Domain Bound To Dna:		3e-05

>pdb|1MDY|B Chain B, Crystal Structure Of Myod Bhlh Domain Bound To Dna: Perspectives On Dna Recognition And Implications For Transcriptional Activation Length = 62

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           D +K A  RER R+  +N AF+ L+        P ++L K+E LR AIRYI  LQ LL
Sbjct: 5   DRRKAATMRERRRLSKVNEAFETLKR--STSSNPNQRLPKVEILRNAIRYIEGLQALL 60

>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of The Heterodimer E47NEUROD1 BOUND TO DNA Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 147 ACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202
           A  RER RM  +N A D LR ++ PC    +KLSKIE+LR+A  YI  L  +L  G
Sbjct: 6   ANARERNRMHGLNAALDNLR-KVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSG 60

>pdb|1MDY|A Chain A, Crystal Structure Of Myod Bhlh Domain Bound To Dna: Perspectives On Dna Recognition And Implications For Transcriptional Activation Length = 68

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           D +K A  RER R+  +N AF+ L+        P ++L K+E LR AIRYI  LQ LL
Sbjct: 11  DRRKAATMRERRRLSKVNEAFETLKR--STSSNPNQRLPKVEILRNAIRYIEGLQALL 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	8e-24
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	1e-22
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	8e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	2e-07
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	3e-07
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	8e-07
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-06
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	3e-05
1a0a_A	63	BHLH, protein (phosphate system positive regulator	4e-05
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	5e-05
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	1e-04

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60

 Score = 89.6 bits (223), Expect = 8e-24
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202
           +  A  RER RM  +N A D LR  +P C    +KLSKIE+LR+A  YI  L  +L  G
Sbjct: 3   RMKANARERNRMHGLNAALDNLRKVVP-CYSKTQKLSKIETLRLAKNYIWALSEILRSG 60

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68

 Score = 86.7 bits (215), Expect = 1e-22
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCL 198
           +  D +K A  RER R+  +N AF+ L+        P ++L K+E LR AIRYI  LQ L
Sbjct: 8   TNADRRKAATMRERRRLSKVNEAFETLKRSTSS--NPNQRLPKVEILRNAIRYIEGLQAL 65

Query: 199 LE 200
           L 
Sbjct: 66  LR 67

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199
           D +      ER R RD+N AF  L           K  +K+  L+ A++ I  L+  +
Sbjct: 4   DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQV 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 7e-12
 Identities = 55/314 (17%), Positives = 91/314 (28%), Gaps = 111/314 (35%)

Query: 23  ILV---DSSDTEKL--KTNPHLEILHNADLNFVKDESSSPSSSTL-ISSQCLPSSMTSG- 75
           IL+       T+ L   T  H+ + H++      DE  S     L    Q LP  + +  
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 76  ------------------------------QISSSTLTVLHPMEY--CY----------- 92
                                          I  S+L VL P EY   +           
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 93  -PPPPLSL---------PVLVEQSLVKY----ETPNTVTSTAPTPY-----SGANTTRCH 133
            P   LSL          ++V   L KY    + P   T + P+ Y        N    H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 134 RKISDS---ERDYKKTAC-----DR-------------ERTRMRDMNRA--FDL------ 164
           R I D     + +          D+             E      + R    D       
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 165 LRNRLPPCKPPGKKLSKIESLRMAIRYI--------RHLQCLLEYGPEYETILYSSR--S 214
           +R+        G  L+ ++ L+    YI        R +  +L++ P+ E  L  S+   
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 215 VVPSS--TNTSYVY 226
           ++  +       ++
Sbjct: 567 LLRIALMAEDEAIF 580

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 151 ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           ER R   +  +F  LR+ +P  +  G+K S+ + L  A  YI++++
Sbjct: 20  ERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMR 63

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 151 ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           ER R  ++ R+F  LR+++P      +K  K+  L+ A  YI  +Q
Sbjct: 14  ERQRRNELKRSFFALRDQIPEL-ENNEKAPKVVILKKATAYILSVQ 58

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 151 ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           ER R   +  +F  LR+ +P  +  G+K S+ + L  A  YI++++
Sbjct: 10  ERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMR 53

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 151 ERTRMRDMNRAFDLLRNRLPPC--KPPGKKLSKIESLRMAIRYIRHLQ 196
           ER R   +N     L   +P    +      SK   L  A  YI+ L+
Sbjct: 13  ERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 151 ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           E+     +N     L++ +   +    KL+K   LR AI YIR LQ
Sbjct: 14  EKRYRSSINDKIIELKDLVVGTE---AKLNKSAVLRKAIDYIRFLQ 56

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 68

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 133 HRKISDSERDYKKTACDRERTRMR-DMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRY 191
           H     S     K     E   +  DMN  +  LR  L P  P G +LS++E L+  I Y
Sbjct: 3   HHHHHHSHMGGGKGPAAEEPLSLLDDMNHCYSRLR-ELVPGVPRGTQLSQVEILQRVIDY 61

Query: 192 IRHLQ 196
           I  LQ
Sbjct: 62  ILDLQ 66

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 151 ERTRMRDMNRAFDLLRNRLPPC---KPPGKKLSKIESLRMAIRYIRHLQ 196
           E+ R   +  A   L + +P     +      SK  ++  A RYIRHLQ
Sbjct: 10  EQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 151 ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           E+ R   +  + + L+  + P  P   + + +  L  A  +I+ L+
Sbjct: 9   EKNRRAHLRLSLEKLKGLV-PLGPDSSRHTTLSLLTKAKLHIKKLE 53

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 133 HRKISDSERDYKKTACDRERTRMRD-MNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRY 191
           + +     ++ ++     E+ R RD MN   D L + +P C    +KL K+  LRMA+++
Sbjct: 3   YAEHQGRIKNAREAHSQIEKRR-RDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQH 61

Query: 192 IRHLQCLLEYGPE 204
           ++ L+       E
Sbjct: 62  MKTLRGATNPYTE 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.88
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.87
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	99.8
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	99.79
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.67
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.55
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.49
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.48
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.41
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.3
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.23
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.15
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.14
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.13
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.12
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.42
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.24
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.85
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	93.04

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.88  E-value=5.1e-23  Score=148.89  Aligned_cols=59  Identities=44%  Similarity=0.585  Sum_probs=55.2

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      +|.+||+|||+||+.||+||+.||.+||. .+.++||||++||++|++||.+|+++|+++
T Consensus         2 rR~~~N~rER~R~~~iN~af~~LR~~lP~-~~~~~klSKi~tLr~Ai~YI~~L~~~L~~g   60 (60)
T 2ql2_B            2 RRMKANARERNRMHGLNAALDNLRKVVPC-YSKTQKLSKIETLRLAKNYIWALSEILRSG   60 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSS-CCSSSCCCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHccC-CCCcCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            78899999999999999999999999995 678999999999999999999999999864

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.87  E-value=1.8e-22  Score=149.49  Aligned_cols=67  Identities=42%  Similarity=0.624  Sum_probs=59.4

Q ss_pred             cccCCCCccchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         131 RCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       131 r~~r~~~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      .|+|+.  ....+|.+||+|||+||+.||+||+.||.+||.  .+++||||++||+.||+||.+|+++|++
T Consensus         2 ~ckr~~--~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~--~~~~KlSKi~tLr~Ai~YI~~L~~~L~~   68 (68)
T 1mdy_A            2 ELKRKT--TNADRRKAATMRERRRLSKVNEAFETLKRSTSS--NPNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             CSSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS--CTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCcCC--CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence            466654  346789999999999999999999999999995  3489999999999999999999999864

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=99.80  E-value=8.3e-20  Score=143.74  Aligned_cols=66  Identities=30%  Similarity=0.424  Sum_probs=53.8

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETIL  209 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~~~~~  209 (248)
                      |++.+..+||.||+.||+||+.||++||+ .+.++|||||||||+||+||.+|+++|++.+.....+
T Consensus        25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~-~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~~~   90 (97)
T 4aya_A           25 RSKTPVDDPMSLLYNMNDCYSKLKELVPS-IPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSFLV   90 (97)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHCTT-SCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTCC-
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHCCC-CCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Confidence            44455677899999999999999999995 6789999999999999999999999999987544433

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.79  E-value=1.8e-20  Score=139.06  Aligned_cols=51  Identities=35%  Similarity=0.574  Sum_probs=48.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9185         146 TACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQC  197 (248)
Q Consensus       146 ~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~  197 (248)
                      .||+|||+||+.||+||+.||++||. .+.++|||||||||+||+||.+|+.
T Consensus        17 ~a~erER~Rm~~lN~aF~~LR~~VP~-~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           17 PAAEEPLSLLDDMNHCYSRLRELVPG-VPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCBCCCSCSSSHHHHHHHHHHHHCCC-CCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCccHHHHHHHHHHHHHHHHc
Confidence            57999999999999999999999995 6889999999999999999999985

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.67  E-value=2.2e-17  Score=124.36  Aligned_cols=65  Identities=25%  Similarity=0.190  Sum_probs=53.1

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEY  205 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~  205 (248)
                      .++|..+|++||+|+..||+||+.||.+||.+.+.++++||++||+.||+||..|++.|++...+
T Consensus         3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~   67 (76)
T 3u5v_A            3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN   67 (76)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45889999999999999999999999999943455677799999999999999999999987543

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.55  E-value=8.6e-15  Score=110.03  Aligned_cols=61  Identities=25%  Similarity=0.355  Sum_probs=54.4

Q ss_pred             chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      ...+|..+|.+||+|+..||.+|+.|+.+||..  .+.|+||++||+.|++||.+|+..++..
T Consensus         9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~--~~~k~sK~~iL~~Ai~YI~~L~~~~~~L   69 (80)
T 1hlo_A            9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSL--QGEKASRAQILDKATEYIQYMRRKNHTH   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG--TTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999952  3578999999999999999999877653

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.49  E-value=3.7e-14  Score=106.95  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=51.7

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      +|..+|.+||+|+..||++|+.|+.+||..  .+.|+||++||+.|++||..|+..++.
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~--~~~k~sK~~iL~~Ai~YI~~L~~~~~~   58 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSL--QGEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGG--TTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999952  368899999999999999999976654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.48  E-value=6.9e-14  Score=107.53  Aligned_cols=59  Identities=27%  Similarity=0.357  Sum_probs=53.8

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE  200 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~  200 (248)
                      ..+|..+|..||+|+..||++|+.||.+||. .+.+.|+||+.||+.||+||..|+....
T Consensus         4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~-~~~~~K~sK~~iL~~A~~YI~~L~~~~~   62 (88)
T 1nkp_A            4 NVKRRTHNVLERQRRNELKRSFFALRDQIPE-LENNEKAPKVVILKKATAYILSVQAEEQ   62 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGG-GTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999994 5568999999999999999999998654

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.41  E-value=4.4e-13  Score=101.57  Aligned_cols=57  Identities=18%  Similarity=0.234  Sum_probs=52.0

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       144 R~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      |..+|+.||+|+..||.+|+.||.+||. .+.+.|+||+.||+.|++||..|+.-...
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~-~~~~~k~sk~~iL~kA~~yI~~L~~~~~~   58 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPL-GPDSSRHTTLSLLTKAKLHIKKLEDSDRK   58 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCC-CSSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999994 56789999999999999999999986543

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.30  E-value=5.3e-12  Score=95.58  Aligned_cols=58  Identities=26%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      ..+|..+|..||+|...||++|..|+.+||.   .+.|++|+.||..||+||.+|+..++.
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~---~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~   61 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRFLQHSNQK   61 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999994   368999999999999999999987764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.23  E-value=1.6e-12  Score=93.84  Aligned_cols=55  Identities=24%  Similarity=0.200  Sum_probs=48.5

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPP--GKKLSKIESLRMAIRYIRHLQC  197 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~--~kKLSKietLr~Ai~YI~~L~~  197 (248)
                      +|..+|..||+|...||++|+.|+.+||.+...  ..|++|+.||..|++||..|+.
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~   61 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999964422  2589999999999999999986

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.15  E-value=1.1e-11  Score=90.03  Aligned_cols=57  Identities=26%  Similarity=0.264  Sum_probs=49.5

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKP---PGKKLSKIESLRMAIRYIRHLQCLL  199 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~---~~kKLSKietLr~Ai~YI~~L~~lL  199 (248)
                      +|..++.-||.|+..||.+|+.|+.+||.+..   .+.++||.+||.+|++||..|++-+
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            46678999999999999999999999995432   2689999999999999999998643

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=86.07  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=52.5

Q ss_pred             chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185         140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE  200 (248)
Q Consensus       140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~  200 (248)
                      .+.+|..+|..||+|...||..|..|+.+||.   ...|+.|..||+.||+||..|+..+.
T Consensus         5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~---~~~K~dK~sIL~~aI~yik~Lq~~~~   62 (71)
T 4h10_B            5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG---NARKMDKSTVLQKSIDFLRKHKEITA   62 (71)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS---CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC---CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence            34578899999999999999999999999993   46799999999999999999998764

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.13  E-value=4.1e-11  Score=89.54  Aligned_cols=58  Identities=28%  Similarity=0.491  Sum_probs=51.7

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCL  198 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~l  198 (248)
                      +.+|..++..||+|...||.+|+.|+.+||.+.....||.|+.||++||+||..|+..
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~   64 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   64 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence            4578889999999999999999999999996544568999999999999999998754

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.12  E-value=1.1e-10  Score=93.88  Aligned_cols=61  Identities=25%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      .+|..+|.-||+|...||++|..|+.+||.+...+.|++|+.||..||+||..|+..++..
T Consensus        26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l   86 (118)
T 4ati_A           26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA   86 (118)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677899999999999999999999999976555789999999999999999998766544

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.42  E-value=3.3e-07  Score=83.38  Aligned_cols=57  Identities=19%  Similarity=0.288  Sum_probs=44.4

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE  200 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~  200 (248)
                      +.+|..+|..||+|...||..|..|+.+||   ....||.|+.||++|+.||..|+.+-.
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~~~~   66 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKETTA   66 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence            346778999999999999999999999999   246899999999999999999998654

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.24  E-value=7.1e-07  Score=82.29  Aligned_cols=56  Identities=29%  Similarity=0.527  Sum_probs=50.1

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ  196 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~  196 (248)
                      +.+|..+|.-||+|...||..|.+|+.+||.+.....||.|+.||++|+.||+.|+
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~   66 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR   66 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence            45678899999999999999999999999954345789999999999999999887

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.85  E-value=3.1e-05  Score=59.33  Aligned_cols=46  Identities=24%  Similarity=0.345  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         156 RDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       156 ~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      -+||+.|.+|..+||.+..++-|+.|..||+.|++||.+|++-.+.
T Consensus         5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r   50 (83)
T 4ath_A            5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR   50 (83)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999997656789999999999999999999875443

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=93.04  E-value=0.17  Score=41.89  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9185         156 RDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ  196 (248)
Q Consensus       156 ~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~  196 (248)
                      -.|+-+|++|.+.||-......+|.|.-||+.|.++...|-
T Consensus        94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~  134 (138)
T 3muj_A           94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY  134 (138)
T ss_dssp             CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence            56899999999999954455699999999999999988773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	1e-15
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	4e-14
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	4e-12
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	2e-11
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	1e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-10
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-08
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	2e-04

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 134 RKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIR 193
           RK ++++R  +K A  RER R+  +N AF+ L+        P ++L K+E LR AIRYI 
Sbjct: 5   RKTTNADR--RKAATMRERRRLSKVNEAFETLKRSTSSN--PNQRLPKVEILRNAIRYIE 60

Query: 194 HLQCLLE 200
            LQ LL 
Sbjct: 61  GLQALLR 67

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (153), Expect = 4e-14
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPC--KPPGKKLSKIESLRMAIRYIRHLQ 196
           +   +    + ER R   +N     L   +P    +      SK   L  A  YI+ L+
Sbjct: 2   DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 4e-12
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200
           +      ER R   +  +F  LR+ +P     G+K S+ + L  A  YI++++    
Sbjct: 3   RAHHNALERKRRDHIKDSFHSLRDSVPSL--QGEKASRAQILDKATEYIQYMRRKNH 57

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (134), Expect = 2e-11
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPC---KPPGKKLSKIESLRMAIRYIRHLQ 196
           +++    E+ R   +  A   L + +P     +      SK  ++  A RYIRHLQ
Sbjct: 3   RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           ++T    ER R  ++ R+F  LR+++P      +K  K+  L+ A  YI  +Q
Sbjct: 7   RRTHNVLERQRRNELKRSFFALRDQIPEL-ENNEKAPKVVILKKATAYILSVQ 58

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           + T  + E+ R   +  + + L+  +P   P   + + +  L  A  +I+ L+
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLG-PDSSRHTTLSLLTKAKLHIKKLE 53

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           S  + +      E+     +N     L++ +   +    KL+K   LR AI YIR LQ
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE---AKLNKSAVLRKAIDYIRFLQ 56

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 152 RTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           R+ + D       L++ +        K+ K   LR AI YI++LQ
Sbjct: 1   RSSINDK---IIELKDLVMGTD---AKMHKSGVLRKAIDYIKYLQ 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.65
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.44
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.42
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.35
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.6

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.2e-16  Score=115.67  Aligned_cols=61  Identities=43%  Similarity=0.644  Sum_probs=54.9

Q ss_pred             cchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       139 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      ....+|..+|.+||.|+..||++|+.|+.+||.+  +.+|++|++||+.||+||.+|+++|++
T Consensus         8 ~~~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~--~~~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_           8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSN--PNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC--TTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            3456889999999999999999999999999963  467999999999999999999998864

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.1e-14  Score=104.18  Aligned_cols=60  Identities=27%  Similarity=0.313  Sum_probs=54.3

Q ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      .+|..+|++||+|+..||++|+.|+.+||. .+...|+||++||+.|++||..|++.+..-
T Consensus         5 ~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~-~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   64 (88)
T d1nkpa_           5 VKRRTHNVLERQRRNELKRSFFALRDQIPE-LENNEKAPKVVILKKATAYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCGG-GTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999995 456789999999999999999999877653

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.5e-14  Score=103.05  Aligned_cols=57  Identities=25%  Similarity=0.344  Sum_probs=51.8

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      +|..+|.+||+|+..||++|+.|+.+||.  ..+.|++|++||+.|++||..|+..+..
T Consensus         2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~--~~~~k~sK~~iL~~A~~yI~~L~~~~~~   58 (83)
T d1nkpb_           2 KRAHHNALERKRRDHIKDSFHSLRDSVPS--LQGEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGG--GTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999995  2478999999999999999999876654

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=101.12  Aligned_cols=58  Identities=17%  Similarity=0.233  Sum_probs=52.6

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       144 R~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      |..+|..||+|+..||++|+.|+.+||. .+...|+||++||+.|++||..|+..+...
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~-~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPL-GPDSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCC-CSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCcc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999995 456789999999999999999999877653

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=4.3e-14  Score=100.36  Aligned_cols=57  Identities=26%  Similarity=0.291  Sum_probs=50.7

Q ss_pred             HhhHhhHHHHHHHHHHHHHHHHHHhhCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9185         143 YKKTACDRERTRMRDMNRAFDLLRNRLPPC---KPPGKKLSKIESLRMAIRYIRHLQCLL  199 (248)
Q Consensus       143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~---~~~~kKLSKietLr~Ai~YI~~L~~lL  199 (248)
                      +|..+|..||+|+..||++|+.|+.+||.+   ...+.|++|++||+.|++||.+|++-+
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            577899999999999999999999999942   246799999999999999999998643

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.6e-14  Score=99.92  Aligned_cols=56  Identities=23%  Similarity=0.220  Sum_probs=50.1

Q ss_pred             HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCCCHHHHHHHHHHHHHHHHH
Q psy9185         142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCK--PPGKKLSKIESLRMAIRYIRHLQC  197 (248)
Q Consensus       142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~--~~~kKLSKietLr~Ai~YI~~L~~  197 (248)
                      .+|..+|..||+|+..||++|+.|+.+||...  ..+.|++|++||+.|++||..|++
T Consensus         4 ~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~   61 (65)
T d1an4a_           4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999643  346799999999999999999975

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.8e-12  Score=95.54  Aligned_cols=58  Identities=26%  Similarity=0.248  Sum_probs=52.4

Q ss_pred             hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185         141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY  201 (248)
Q Consensus       141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~  201 (248)
                      ..+|..+|..||+|...||++|+.|+.+||.   ...|++|++||..|++||..|+..++.
T Consensus         4 ~~kR~~H~~~Er~RR~~in~~~~~L~~llP~---~~~k~~K~~iL~~a~~yI~~L~~~~~~   61 (80)
T d1am9a_           4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRFLQHSNQK   61 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999994   367999999999999999999987654

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.2e-08  Score=71.41  Aligned_cols=43  Identities=28%  Similarity=0.257  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185         157 DMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG  202 (248)
Q Consensus       157 ~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~  202 (248)
                      .||+.|..||.+||.   ...|++|++||..||+||..|+..+..-
T Consensus         3 ~in~~f~~L~~lvP~---~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L   45 (61)
T d1uklc_           3 SINDKIIELKDLVMG---TDAKMHKSGVLRKAIDYIKYLQQVNHKL   45 (61)
T ss_dssp             CHHHHHHHHHHHHSC---SSCCCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC---CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999994   3579999999999999999999877653