Psyllid ID: psy9188

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQSPHSV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccEEEEEcccccccccHHHHHHHHHHHcccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccEEEccccccccccccccHHHcccccccEEEEEEccEEEEcccccccEccHHHHHHHHHHHcccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MLFLFLQKHarehglpwtvgksfdtacpvsdfipeheikdpddvplwlkvngelrqksttgdmlfkTGDLISYISQHmtlepydliltgkAGFILMFQQSPHSV
Flexible Loop (DISEMBL)
MLFLFLQKHARehglpwtvgksFDTACPVSDFIPeheikdpddvplWLKVNGElrqksttgdmlfKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQSPHSV
Low Complexity Region (SEG)
MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQSPHSV
Disordered region (IsUnstruct)
*LFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMF*******
Disordered Region (DISOPRED)
MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQS****
Disordered Region (DISEMBL)
MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQSPHSV
Disordered Region (DISPRO)
MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQSPHSV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q2HJ98	221	Acylpyruvase FAHD1, mitoc	yes	N/A	0.807	0.380	0.535	1e-21
Q8R0F8	227	Acylpyruvase FAHD1, mitoc	yes	N/A	0.807	0.370	0.535	3e-21
Q6AYQ8	221	Acylpyruvase FAHD1, mitoc	yes	N/A	0.807	0.380	0.535	5e-21
Q5RDW0	224	Acylpyruvase FAHD1, mitoc	yes	N/A	0.807	0.375	0.523	1e-20
Q6P587	224	Acylpyruvase FAHD1, mitoc	yes	N/A	0.807	0.375	0.523	1e-20
Q86I22	218	Acylpyruvase FAHD1, mitoc	yes	N/A	0.798	0.380	0.530	4e-19
Q9UYW0	225	Uncharacterized protein P	yes	N/A	0.807	0.373	0.511	3e-17
O58377	230	Uncharacterized protein P	yes	N/A	0.807	0.365	0.488	1e-16
P76004	219	Uncharacterized protein Y	N/A	N/A	0.807	0.383	0.458	4e-15
B2RYW9	313	Fumarylacetoacetate hydro	no	N/A	0.855	0.284	0.422	5e-15

>sp|Q2HJ98|FAHD1_BOVIN Acylpyruvase FAHD1, mitochondrial OS=Bos taurus GN=FAHD1 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP ++ LWLKVNGELRQ+  T  M+F
Sbjct: 105 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHNLKLWLKVNGELRQEGETSSMIF 164

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               +ISY+S+ MTLE  D+ILTG
Sbjct: 165 SIPYIISYVSKIMTLEEGDIILTG 188

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 5

>sp|Q8R0F8|FAHD1_MOUSE Acylpyruvase FAHD1, mitochondrial OS=Mus musculus GN=Fahd1 PE=1 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 62/84 (73%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +Q+  ++ GLPWT+ KSF ++CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct: 111 VQEECKKKGLPWTLAKSFTSSCPVSAFVPKEKIPDPHALRLWLKVNGELRQEGKTSSMIF 170

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               +ISY+S+ +TLE  DLILTG
Sbjct: 171 SIPYIISYVSKIITLEEGDLILTG 194

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6AYQ8|FAHD1_RAT Acylpyruvase FAHD1, mitochondrial OS=Rattus norvegicus GN=Fahd1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +Q   ++ GLPWT+ KSF ++CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct: 105 VQDECKKKGLPWTLAKSFTSSCPVSAFVPKEKIPDPHALRLWLKVNGELRQEGKTSSMIF 164

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               +ISY+S+ +TLE  DLILTG
Sbjct: 165 SIPYIISYVSKIITLEEGDLILTG 188

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q5RDW0|FAHD1_PONAB Acylpyruvase FAHD1, mitochondrial OS=Pongo abelii GN=FAHD1 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct: 108 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 167

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               +ISY+S+ +TLE  D+ILTG
Sbjct: 168 SIPYIISYVSKIITLEEGDIILTG 191

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6P587|FAHD1_HUMAN Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct: 108 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 167

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               +ISY+S+ +TLE  D+ILTG
Sbjct: 168 SIPYIISYVSKIITLEEGDIILTG 191

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q86I22|FAHD1_DICDI Acylpyruvase FAHD1, mitochondrial OS=Dictyostelium discoideum GN=fahd1 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 56/83 (67%)

Query: 7   QKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
           Q  A+   LPWTV K +DT CP+S FIP+ +IKD ++V LW  V+G+++QK  T  M+F 
Sbjct: 101 QSIAKAKSLPWTVSKGYDTFCPISGFIPKDKIKDLNNVELWCSVDGQIKQKGNTNQMIFD 160

Query: 67  TGDLISYISQHMTLEPYDLILTG 89
              LI YIS  MTLE  DLILTG
Sbjct: 161 VPHLIQYISSIMTLESGDLILTG 183

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9UYW0|Y1397_PYRAB Uncharacterized protein PYRAB13970 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB13970 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           LQ  AR+ G PWTV K FDT  P+   I +    DP D+ + LKVNG++RQ   T +M+F
Sbjct: 106 LQAEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIF 165

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
           K  +LI YIS  MTLEP D+I TG
Sbjct: 166 KIPELIEYISSIMTLEPGDIIATG 189

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

>sp|O58377|Y643_PYRHO Uncharacterized protein PH0643 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0643 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 53/84 (63%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           LQ  AR+ G PWT+ K FDT  P+   + +    DP D+ + LKVNG++RQ   T  M+F
Sbjct: 111 LQAEARKKGYPWTISKGFDTFAPIGPRVVDSRELDPSDLEIGLKVNGKIRQLGRTSQMIF 170

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
           K  +LI YIS  MTLEP D+I TG
Sbjct: 171 KIPELIEYISHIMTLEPGDIIATG 194

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

>sp|P76004|YCGM_ECOLI Uncharacterized protein YcgM OS=Escherichia coli (strain K12) GN=ycgM PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIK-DPDDVPLWLKVNGELRQKSTTGDML 64
           +Q   ++ G PW   K+FD +CP+S FIP  E   DP +  L L VNGE RQ+ TT DM+
Sbjct: 107 VQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMI 166

Query: 65  FKTGDLISYISQHMTLEPYDLILTG 89
            K   LI+Y+S+  TL+  D++LTG
Sbjct: 167 HKIVPLIAYMSKFFTLKAGDVVLTG 191

Escherichia coli (strain K12) (taxid: 83333)

>sp|B2RYW9|FAHD2_RAT Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Rattus norvegicus GN=Fahd2 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 13  HGLPWTVGKSFDTACPVSD-FIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLI 71
           +G  W +GK+FDT CP+    + +  I DP ++ +  +VNGE+ Q S T  M+FKT DLI
Sbjct: 200 NGKQWLLGKTFDTFCPLGPALVTKDTIADPHNLKISCRVNGEIVQSSNTNQMVFKTEDLI 259

Query: 72  SYISQHMTLEPYDLILTGKAGFILMFQQSP 101
           +++SQ +TL P D++LTG    + MF++ P
Sbjct: 260 AWVSQFVTLYPGDILLTGTPPGVGMFRKPP 289

May have hydrolase activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
260817938	195	hypothetical protein BRAFLDRAFT_240307 [	0.798	0.425	0.602	1e-23
91077418	213	PREDICTED: similar to CG5793 CG5793-PA [	0.788	0.384	0.621	8e-23
195107329	223	GI23871 [Drosophila mojavensis] gi|19391	0.769	0.358	0.637	1e-22
270001632	165	hypothetical protein TcasGA2_TC000486 [T	0.788	0.496	0.621	1e-22
195445440	221	GK11096 [Drosophila willistoni] gi|19416	0.769	0.361	0.612	1e-22
194899572	220	GG24388 [Drosophila erecta] gi|190651036	0.769	0.363	0.6	2e-22
195152027	220	GL21789 [Drosophila persimilis] gi|19411	0.769	0.363	0.6	2e-22
390178635	182	GA26403 [Drosophila pseudoobscura pseudo	0.769	0.439	0.6	2e-22
449663959	215	PREDICTED: acylpyruvase FAHD1, mitochond	0.769	0.372	0.625	2e-22
301612816	219	PREDICTED: fumarylacetoacetate hydrolase	0.894	0.424	0.537	3e-22

>gi|260817938|ref|XP_002603842.1| hypothetical protein BRAFLDRAFT_240307 [Branchiostoma floridae] gi|229289165|gb|EEN59853.1| hypothetical protein BRAFLDRAFT_240307 [Branchiostoma floridae]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 7   QKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
           Q  A+E G+PWT  K FDTACP+S+F+P+ ++ DP D+ +WLKVNGE+RQK+ T DM+F 
Sbjct: 81  QNIAKEKGIPWTWAKCFDTACPISEFVPKEKVSDPQDLNMWLKVNGEVRQKTNTNDMIFT 140

Query: 67  TGDLISYISQHMTLEPYDLILTG 89
              +ISYIS+ MTLEP DLILTG
Sbjct: 141 VPYIISYISKMMTLEPGDLILTG 163

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91077418|ref|XP_975403.1| PREDICTED: similar to CG5793 CG5793-PA [Tribolium castaneum]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%)

Query: 8   KHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKT 67
           K AR  G  WT+GK FDTACPVS FIP+  IKDP D+ LW KVNGELRQ+  T D++F  
Sbjct: 102 KEARSKGGSWTLGKGFDTACPVSKFIPKSAIKDPHDLNLWCKVNGELRQEGNTNDLIFSI 161

Query: 68  GDLISYISQHMTLEPYDLILTG 89
             LIS+ISQ++TLE  DLI+TG
Sbjct: 162 PKLISFISQYITLENNDLIITG 183

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195107329|ref|XP_001998266.1| GI23871 [Drosophila mojavensis] gi|193914860|gb|EDW13727.1| GI23871 [Drosophila mojavensis]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 61/80 (76%)

Query: 10  AREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
           AR  G  WT+GK FDTA PVS FIP   + DP  +PLWLKVNGEL+QK  T D++FK  D
Sbjct: 111 ARATGGSWTLGKGFDTATPVSRFIPLDAVGDPHALPLWLKVNGELKQKGCTADLVFKVPD 170

Query: 70  LISYISQHMTLEPYDLILTG 89
           +ISY+S++MTLEP DLILTG
Sbjct: 171 IISYVSKYMTLEPNDLILTG 190

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001632|gb|EEZ98079.1| hypothetical protein TcasGA2_TC000486 [Tribolium castaneum]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%)

Query: 8   KHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKT 67
           K AR  G  WT+GK FDTACPVS FIP+  IKDP D+ LW KVNGELRQ+  T D++F  
Sbjct: 54  KEARSKGGSWTLGKGFDTACPVSKFIPKSAIKDPHDLNLWCKVNGELRQEGNTNDLIFSI 113

Query: 68  GDLISYISQHMTLEPYDLILTG 89
             LIS+ISQ++TLE  DLI+TG
Sbjct: 114 PKLISFISQYITLENNDLIITG 135

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445440|ref|XP_002070325.1| GK11096 [Drosophila willistoni] gi|194166410|gb|EDW81311.1| GK11096 [Drosophila willistoni]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query: 10  AREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
           AR  G PWT+GK FDT+ PVS FIP   +KD  ++ LWLKVNGE++QK  T D++FK   
Sbjct: 111 ARAAGSPWTLGKGFDTSTPVSKFIPFDNVKDAHNLSLWLKVNGEVKQKGCTADLIFKVPA 170

Query: 70  LISYISQHMTLEPYDLILTG 89
           +ISY+SQ+MTLEP DLILTG
Sbjct: 171 IISYVSQYMTLEPNDLILTG 190

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194899572|ref|XP_001979333.1| GG24388 [Drosophila erecta] gi|190651036|gb|EDV48291.1| GG24388 [Drosophila erecta]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 62/80 (77%)

Query: 10  AREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
           AR  G PWT+GK FDT+ PVS FI   ++KDP ++PLWL VNG ++QK  T D++FK  D
Sbjct: 110 ARAAGHPWTLGKGFDTSTPVSQFISLEKVKDPHNLPLWLTVNGAVKQKGCTADLIFKVPD 169

Query: 70  LISYISQHMTLEPYDLILTG 89
           +ISY+S++MTLEP DLILTG
Sbjct: 170 IISYVSKYMTLEPNDLILTG 189

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195152027|ref|XP_002016940.1| GL21789 [Drosophila persimilis] gi|194111997|gb|EDW34040.1| GL21789 [Drosophila persimilis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 63/80 (78%)

Query: 10  AREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
           AR  G PWT+GK FDT+ PVS FIP  ++ DP  +PLWLKVNG+++Q+  T D++FK  D
Sbjct: 110 ARAAGHPWTLGKGFDTSTPVSRFIPFDDVDDPHTLPLWLKVNGQVKQQGCTADLIFKVPD 169

Query: 70  LISYISQHMTLEPYDLILTG 89
           +ISY+S++MTLEP DLILTG
Sbjct: 170 IISYVSKYMTLEPNDLILTG 189

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178635|ref|XP_002137669.2| GA26403 [Drosophila pseudoobscura pseudoobscura] gi|388859526|gb|EDY68227.2| GA26403 [Drosophila pseudoobscura pseudoobscura]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 63/80 (78%)

Query: 10  AREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
           AR  G PWT+GK FDT+ PVS FIP  ++ DP  +PLWLKVNG+++Q+  T D++FK  D
Sbjct: 72  ARAAGHPWTLGKGFDTSTPVSRFIPFDDVDDPHTLPLWLKVNGQVKQQGCTADLIFKVPD 131

Query: 70  LISYISQHMTLEPYDLILTG 89
           +ISY+S++MTLEP DLILTG
Sbjct: 132 IISYVSKYMTLEPNDLILTG 151

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449663959|ref|XP_002170926.2| PREDICTED: acylpyruvase FAHD1, mitochondrial-like [Hydra magnipapillata]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 59/80 (73%)

Query: 10  AREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
            RE  LPW + K++DT CPVSDFIP+  IK+PDDV LWL V+GE++Q  +T DMLF    
Sbjct: 105 VREKSLPWCIAKNWDTFCPVSDFIPKEAIKNPDDVNLWLTVDGEMKQSESTSDMLFSVAK 164

Query: 70  LISYISQHMTLEPYDLILTG 89
           LISY SQ MTLE  DLILTG
Sbjct: 165 LISYTSQVMTLERGDLILTG 184

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|301612816|ref|XP_002935896.1| PREDICTED: fumarylacetoacetate hydrolase domain-containing protein 1-like isoform 2 [Xenopus (Silurana) tropicalis]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 66/93 (70%)

Query: 7   QKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
           Q H ++ GLPWT+ K+FDT+CPVSD IP+ +I+DP +V +WLKVNG LRQ+  T  M+F 
Sbjct: 105 QDHCKKKGLPWTLAKAFDTSCPVSDLIPKEKIQDPGNVSIWLKVNGSLRQEGNTSAMIFP 164

Query: 67  TGDLISYISQHMTLEPYDLILTGKAGFILMFQQ 99
              LISYIS+ +TLE  DLILTG    +   Q+
Sbjct: 165 VPFLISYISKIITLEEGDLILTGTPAGVASVQE 197

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
FB|FBgn0038858	228	CG5793 [Drosophila melanogaste	0.769	0.350	0.587	1.3e-22
UNIPROTKB|F1NXZ7	183	FAHD1 "Uncharacterized protein	0.798	0.453	0.554	5.5e-22
UNIPROTKB|Q2HJ98	221	FAHD1 "Acylpyruvase FAHD1, mit	0.807	0.380	0.535	4.9e-21
MGI|MGI:1915886	227	Fahd1 "fumarylacetoacetate hyd	0.807	0.370	0.535	1e-20
RGD|1304560	221	Fahd1 "fumarylacetoacetate hyd	0.807	0.380	0.535	1.7e-20
UNIPROTKB|Q6AYQ8	221	Fahd1 "Acylpyruvase FAHD1, mit	0.807	0.380	0.535	1.7e-20
UNIPROTKB|Q6P587	224	FAHD1 "Acylpyruvase FAHD1, mit	0.807	0.375	0.523	2.1e-20
UNIPROTKB|Q5RDW0	224	FAHD1 "Acylpyruvase FAHD1, mit	0.807	0.375	0.523	2.1e-20
ZFIN|ZDB-GENE-050522-448	219	fahd1 "fumarylacetoacetate hyd	0.807	0.383	0.5	1.9e-19
DICTYBASE|DDB_G0275071	218	fahd1 "Fumarylacetoacetate (FA	0.798	0.380	0.530	3.1e-19

FB|FBgn0038858 CG5793 [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query:    10 AREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
             AR  G PWT+GK FDT+ PVS FIP  ++ DP ++PLWL VNG+L+Q   T D++FK  D
Sbjct:   118 ARAAGHPWTLGKGFDTSTPVSQFIPIEKVTDPHNLPLWLTVNGDLKQNGCTADLIFKVPD 177

Query:    70 LISYISQHMTLEPYDLILTG 89
             +ISY+S++MTLE  DLILTG
Sbjct:   178 IISYVSKYMTLEANDLILTG 197

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|F1NXZ7 FAHD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 46/83 (55%), Positives = 62/83 (74%)

Query:     7 QKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
             QK  ++ GLPWT+ K+F T+CPVS+F+P+ +I DP  + +WLKVNG+LRQ+  T  M+F 
Sbjct:    67 QKECKKKGLPWTLAKAFSTSCPVSEFVPKEKIPDPHKLKIWLKVNGQLRQEGETSSMIFS 126

Query:    67 TGDLISYISQHMTLEPYDLILTG 89
                LISYIS+ +TLE  DLILTG
Sbjct:   127 IPHLISYISEIVTLEEGDLILTG 149

GO:0003824 "catalytic activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q2HJ98 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query:     6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
             +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP ++ LWLKVNGELRQ+  T  M+F
Sbjct:   105 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHNLKLWLKVNGELRQEGETSSMIF 164

Query:    66 KTGDLISYISQHMTLEPYDLILTG 89
                 +ISY+S+ MTLE  D+ILTG
Sbjct:   165 SIPYIISYVSKIMTLEEGDIILTG 188

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1915886 Fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 45/84 (53%), Positives = 62/84 (73%)

Query:     6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
             +Q+  ++ GLPWT+ KSF ++CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct:   111 VQEECKKKGLPWTLAKSFTSSCPVSAFVPKEKIPDPHALRLWLKVNGELRQEGKTSSMIF 170

Query:    66 KTGDLISYISQHMTLEPYDLILTG 89
                 +ISY+S+ +TLE  DLILTG
Sbjct:   171 SIPYIISYVSKIITLEEGDLILTG 194

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISO

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

RGD|1304560 Fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query:     6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
             +Q   ++ GLPWT+ KSF ++CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct:   105 VQDECKKKGLPWTLAKSFTSSCPVSAFVPKEKIPDPHALRLWLKVNGELRQEGKTSSMIF 164

Query:    66 KTGDLISYISQHMTLEPYDLILTG 89
                 +ISY+S+ +TLE  DLILTG
Sbjct:   165 SIPYIISYVSKIITLEEGDLILTG 188

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

UNIPROTKB|Q6AYQ8 Fahd1 "Acylpyruvase FAHD1, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query:     6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
             +Q   ++ GLPWT+ KSF ++CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct:   105 VQDECKKKGLPWTLAKSFTSSCPVSAFVPKEKIPDPHALRLWLKVNGELRQEGKTSSMIF 164

Query:    66 KTGDLISYISQHMTLEPYDLILTG 89
                 +ISY+S+ +TLE  DLILTG
Sbjct:   165 SIPYIISYVSKIITLEEGDLILTG 188

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q6P587 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query:     6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
             +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct:   108 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 167

Query:    66 KTGDLISYISQHMTLEPYDLILTG 89
                 +ISY+S+ +TLE  D+ILTG
Sbjct:   168 SIPYIISYVSKIITLEEGDIILTG 191

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=IDA

GO:0018773 "acetylpyruvate hydrolase activity" evidence=IDA

UNIPROTKB|Q5RDW0 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query:     6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
             +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct:   108 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 167

Query:    66 KTGDLISYISQHMTLEPYDLILTG 89
                 +ISY+S+ +TLE  D+ILTG
Sbjct:   168 SIPYIISYVSKIITLEEGDIILTG 191

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

ZFIN|ZDB-GENE-050522-448 fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/84 (50%), Positives = 59/84 (70%)

Query:     6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
             +Q   +  GLPWT+ K+F+T+CP+SDFIP+ +I DP  + LWLKVN   +Q  +T  M+F
Sbjct:   104 VQDECKSKGLPWTLAKAFNTSCPISDFIPKEKIPDPGSINLWLKVNNVQKQNGSTSQMIF 163

Query:    66 KTGDLISYISQHMTLEPYDLILTG 89
                 LI+YIS+ ++LE  DLILTG
Sbjct:   164 SIPYLINYISEIISLEEGDLILTG 187

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0275071 fahd1 "Fumarylacetoacetate (FAA) hydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 44/83 (53%), Positives = 56/83 (67%)

Query:     7 QKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
             Q  A+   LPWTV K +DT CP+S FIP+ +IKD ++V LW  V+G+++QK  T  M+F 
Sbjct:   101 QSIAKAKSLPWTVSKGYDTFCPISGFIPKDKIKDLNNVELWCSVDGQIKQKGNTNQMIFD 160

Query:    67 TGDLISYISQHMTLEPYDLILTG 89
                LI YIS  MTLE  DLILTG
Sbjct:   161 VPHLIQYISSIMTLESGDLILTG 183

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R0F8	FAHD1_MOUSE	3, ., 7, ., 1, ., 5	0.5357	0.8076	0.3700	yes	N/A
Q9UYW0	Y1397_PYRAB	No assigned EC number	0.5119	0.8076	0.3733	yes	N/A
Q2HJ98	FAHD1_BOVIN	3, ., 7, ., 1, ., 5	0.5357	0.8076	0.3800	yes	N/A
Q6AYQ8	FAHD1_RAT	3, ., 7, ., 1, ., 5	0.5357	0.8076	0.3800	yes	N/A
Q5RDW0	FAHD1_PONAB	3, ., 7, ., 1, ., 5	0.5238	0.8076	0.375	yes	N/A
Q6P587	FAHD1_HUMAN	3, ., 7, ., 1, ., 5	0.5238	0.8076	0.375	yes	N/A
Q86I22	FAHD1_DICDI	3, ., 7, ., 1, ., 5	0.5301	0.7980	0.3807	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	104
COG0179	266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	4e-34
pfam01557	207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	2e-29
PRK10691	219	PRK10691, PRK10691, hypothetical protein; Provisio	2e-26
TIGR02303	245	TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg	5e-19
PRK15203	429	PRK15203, PRK15203, 4-hydroxyphenylacetate degrada	3e-14
TIGR02305	205	TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate deg	3e-13
PRK12764	500	PRK12764, PRK12764, hypothetical protein; Provisio	2e-11
PRK15203	429	PRK15203, PRK15203, 4-hydroxyphenylacetate degrada	8e-04

>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  117 bits (296), Expect = 4e-34
 Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 10  AREHGLPWTVGKSFDTACPVSDFIPEH-EIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 68
             E G PWT  K FDT  PV  +I    EI DP ++PL L+VNGE+RQ+  T DM+F   
Sbjct: 154 MEEKGRPWTRAKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIFSIP 213

Query: 69  DLISYISQHMTLEPYDLILTG 89
           +LI+Y+S+ MTLEP D+ILTG
Sbjct: 214 ELIAYLSRFMTLEPGDVILTG 234

Length = 266

>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family

 Score =  103 bits (260), Expect = 2e-29
 Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 11  REHGLPWTVGKSFDTACPVSDFIPEH-EIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
                PW   KSFD   P+  +I    E+ DP D+ L L+VNGEL Q  +T DM+F   +
Sbjct: 96  DRDYRPWFRAKSFDGFAPLGPWIVTPDELGDPADLELRLRVNGELVQDGSTADMIFSPAE 155

Query: 70  LISYISQHMTLEPYDLILTG 89
           LI+++S+ +TLEP D+ILTG
Sbjct: 156 LIAHLSRFLTLEPGDIILTG 175

This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase, encoded by mhpD in E. coli, is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase. Length = 207

>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional

 Score = 97.1 bits (242), Expect = 2e-26
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIK-DPDDVPLWLKVNGELRQKSTTGDML 64
           LQ   ++ G PW   K+FD +CP+S FIP  E   DP +  L L VNGE+RQ+  T DM+
Sbjct: 107 LQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMI 166

Query: 65  FKTGDLISYISQHMTLEPYDLILTG 89
                LI+Y+S+  TL   D++LTG
Sbjct: 167 HPIVPLIAYMSRFFTLRAGDVVLTG 191

Length = 219

>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

 Score = 77.9 bits (192), Expect = 5e-19
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 21  KSFDTACPVSDFIPE-HEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 79
           K+ DT  P+  +I +  +++DP ++ L   VNGEL Q+  T DM+F   +LI Y+S+ MT
Sbjct: 145 KNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEGNTSDMIFSVAELIEYLSEFMT 204

Query: 80  LEPYDLILTG 89
           LEP D+ILTG
Sbjct: 205 LEPGDVILTG 214

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 245

>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

 Score = 66.6 bits (162), Expect = 3e-14
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 21  KSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 79
           KS D   P+   I P+  I DP ++ L   VNGELRQ+ TT D++F    LI+Y+S+ MT
Sbjct: 325 KSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT 384

Query: 80  LEPYDLILTG 89
           L P D+I TG
Sbjct: 385 LNPGDMIATG 394

Length = 429

>gnl|CDD|131358 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit

 Score = 62.4 bits (152), Expect = 3e-13
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 20  GKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 79
            K  D  CP+   +P   I +PD++ ++  +NG+  Q + T +++     LIS +S+ MT
Sbjct: 108 AKCRDGFCPIGPEVPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQLISELSEFMT 167

Query: 80  LEPYDLILTGKAG 92
           L P D++L G   
Sbjct: 168 LNPGDVLLLGTPE 180

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 205

>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 46  LWLK--VNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTG 89
           L ++  VNGEL Q  TT D+LF    L++ +SQ +TLE  D+ILTG
Sbjct: 146 LRVRTWVNGELVQDDTTEDLLFPFAQLVADLSQLLTLEEGDVILTG 191

Length = 500

>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 16  PWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 75
           P    K  D  CP+ + +    + + D++ ++ ++NG       T D+      L+S +S
Sbjct: 105 PAIKAKCRDGFCPIGETVA---LSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALS 161

Query: 76  QHMTLEPYDLILTG 89
           +  TL P D IL G
Sbjct: 162 EFATLNPGDAILLG 175

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
COG0179	266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
KOG1535|consensus	217		100.0
TIGR02303	245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.98
PRK10691	219	hypothetical protein; Provisional	99.97
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.96
PRK12764	500	hypothetical protein; Provisional	99.96
TIGR02305	205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	99.94
PLN02856	424	fumarylacetoacetase	99.94
TIGR01266	415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	99.94
PF01557	218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	99.93
TIGR03220	255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	99.69
PRK11342	262	mhpD 2-keto-4-pentenoate hydratase; Provisional	99.63
TIGR02312	267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	99.41
KOG2843|consensus	420		99.36
TIGR03218	263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	98.9
COG3971	264	2-keto-4-pentenoate hydratase [Secondary metabolit	98.67
COG3970	379	Fumarylacetoacetate (FAA) hydrolase family protein	98.3
PF11010	194	DUF2848: Protein of unknown function (DUF2848); In	97.23
PRK06488	65	sulfur carrier protein ThiS; Validated	86.11
cd01617	80	DCX Ubiquitin-like domain of DCX. DCX The ubiquiti	83.26

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=9.6e-39  Score=239.43  Aligned_cols=101  Identities=45%  Similarity=0.718  Sum_probs=96.1

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      +|+||+|..  +.+++|.++|+||+|||+|||+ +.+++.++.++.|+++||||++|+++|++|+|+|++||+|+|+++|
T Consensus       147 ~T~Rd~Q~~--~~~~~w~~aK~~d~~~Pigp~iv~~~e~~d~~~l~l~~~vNGe~~Q~g~t~~Mi~~i~~lI~~lS~~~t  224 (266)
T COG0179         147 VTARDLQME--EKGRPWTRAKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIFSIPELIAYLSRFMT  224 (266)
T ss_pred             cchhcchhh--hhcCCcccccccCCCCCceeEEeccccCCCCccceEEEEECCEEEecCcHHHcccCHHHHHHHHhCCcc
Confidence            699999975  3689999999999999999997 7888889999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcccccCCCcc
Q psy9188          80 LEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      |+|||||+||||+|++++++||+.
T Consensus       225 L~pGDvI~TGTP~Gvg~l~~GD~v  248 (266)
T COG0179         225 LEPGDVILTGTPSGVGFLKPGDVV  248 (266)
T ss_pred             cCCCCEEEeCCCCCcccCCCCCEE
Confidence            999999999999999999999964

>KOG1535|consensus

Probab=100.00  E-value=7.9e-38  Score=224.94  Aligned_cols=103  Identities=46%  Similarity=0.697  Sum_probs=100.5

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +||||+|.+++++|+||..+|+||+|+|+|++++.+.++||.++.+.++|||+++|+++|++|+|+++.+|+|+|+++||
T Consensus        98 mtARd~q~~ak~~g~pw~l~K~~Dtf~Pis~~vpk~~v~Dp~nl~L~l~VnG~~~Q~g~T~~mifkip~li~~is~~~tL  177 (217)
T KOG1535|consen   98 MTARDWQDEAKKKGLPWTLGKGFDTFTPISAIVPKEKVPDPHNLWLWLRVNGETRQTGNTSLMIFKIPDLISRLSQIMTL  177 (217)
T ss_pred             ccchhhhhhhhhcCCCeeeccccCccCcccccccHHHCCCccceEEEEEEccEEEecCchhhheecHHHHHHHHhhheee
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||.|++++++||..
T Consensus       178 ~~GDvILTGTP~GVg~v~~Gd~i  200 (217)
T KOG1535|consen  178 EPGDVILTGTPEGVGEVKPGDVI  200 (217)
T ss_pred             cCCCEEEecCCCccccccCCCEE
Confidence            99999999999999999999963

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

Probab=100.00  E-value=7.7e-34  Score=210.72  Aligned_cols=100  Identities=33%  Similarity=0.422  Sum_probs=94.8

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      ||+||+|..   .+.||.++|+||+|||+|||+ ++++++|+.++.+++++||+++|++++++|+|++.+||+++|++++
T Consensus       128 ~T~Rd~q~~---~~~~~~~aK~~D~~~plGp~i~t~~~~~d~~~l~i~l~vNGe~~q~g~t~~ml~~v~~Li~~ls~~~t  204 (245)
T TIGR02303       128 YAIRDYLEN---YYRPNLRVKNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEGNTSDMIFSVAELIEYLSEFMT  204 (245)
T ss_pred             cchHHHHhh---hcCCcccccCCCCCEeeCCcCCCHHHcCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCC
Confidence            699999964   468999999999999999997 6888888999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcccccCCCcc
Q psy9188          80 LEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      |+|||||+||||.+++++++||+.
T Consensus       205 L~pGDvIlTGTp~g~~~l~~GD~v  228 (245)
T TIGR02303       205 LEPGDVILTGTPKGLSDVKPGDVV  228 (245)
T ss_pred             cCCCCEEEcCCCCCCeEcCCCCEE
Confidence            999999999999999999999975

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.98  E-value=9.3e-33  Score=218.32  Aligned_cols=95  Identities=22%  Similarity=0.291  Sum_probs=88.8

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|.     ++||.++|+||+|||+||||..   +++.+++|+++|||+++|+++|++|+|+++++|+|+|+++||
T Consensus        95 ~t~rd~q~-----~~~~~~~K~~D~~~p~Gp~i~~---~~~~~l~i~~~vNGe~~Q~~~t~~Mi~~~~~lis~lS~~~tL  166 (429)
T PRK15203         95 VSLPEESF-----YRPAIKAKCRDGFCPIGETVAL---SNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATL  166 (429)
T ss_pred             eechhhcc-----cCCcccccCCCCCcccCCeEEC---CCccceEEEEEECCEEEecCCHHHcCCCHHHHHHHHhCCCCc
Confidence            58999885     4689999999999999999843   467899999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++.+++||+.
T Consensus       167 ~pGDvI~TGTP~g~~~l~~GD~v  189 (429)
T PRK15203        167 NPGDAILLGTPQARVEIQPGDRV  189 (429)
T ss_pred             CCCCEEEcCCCCCceECCCCCEE
Confidence            99999999999999999999975

>PRK10691 hypothetical protein; Provisional

Probab=99.97  E-value=2.8e-32  Score=199.45  Aligned_cols=103  Identities=38%  Similarity=0.630  Sum_probs=95.8

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCC-CCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEI-KDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~-~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      +|+||+|.+.+..+.+|.++|+||+|+|+|||++.+++ .|+.+++++++|||+++|++++++|+|+++++|+++|++++
T Consensus       102 vt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~~~d~~~l~i~l~vNG~~~q~g~~~~mi~~~~~lia~ls~~~t  181 (219)
T PRK10691        102 LTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMIHPIVPLIAYMSRFFT  181 (219)
T ss_pred             eEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhccCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCc
Confidence            68999999876667899999999999999999854554 58899999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcccccCCCcc
Q psy9188          80 LEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      |+|||||+||||.+++++++||++
T Consensus       182 L~aGDvI~TGTp~g~~~l~~GD~v  205 (219)
T PRK10691        182 LRAGDVVLTGTPEGVGPLQSGDEL  205 (219)
T ss_pred             cCCCCEEEcCCCCCCEECCCCCEE
Confidence            999999999999999999999975

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.96  E-value=3.2e-29  Score=198.26  Aligned_cols=100  Identities=34%  Similarity=0.401  Sum_probs=94.4

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      +|+||+|..   ...+|.++|+||+|+|+|||+ +.+++.++.+++++++|||+++|++++++|+|+++++|+++|++++
T Consensus       308 ~t~rd~q~~---~~~~w~~~K~~d~~~plGp~~v~~d~~~d~~~l~i~l~vNG~~vq~g~t~~m~~~v~~li~~ls~~~t  384 (429)
T PRK15203        308 YAIRDYLEN---YYRPNLRVKSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT  384 (429)
T ss_pred             ccchhhhhh---hcCCceEeccCCCCcCCCCCEeChhhcCCccceEEEEEECCEEEEeeCHHHhccCHHHHHHHHhcCCC
Confidence            589999964   467899999999999999986 7888889999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcccccCCCcc
Q psy9188          80 LEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      |+|||+|+||||.|++++++||++
T Consensus       385 L~aGDvI~TGTp~g~~~l~pGD~v  408 (429)
T PRK15203        385 LNPGDMIATGTPKGLSDVVPGDEV  408 (429)
T ss_pred             cCCCCEEEeCCCCCCeECCCCCEE
Confidence            999999999999999999999975

>PRK12764 hypothetical protein; Provisional

Probab=99.96  E-value=3.8e-29  Score=200.86  Aligned_cols=99  Identities=28%  Similarity=0.279  Sum_probs=92.2

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      +|+||+|..+   ..+|.++|+||+|+|+|||+ +.+++ |+.+++++++|||+++|++++++|+|++++||+|+|+++|
T Consensus       106 vt~rD~~~~d---~~~~~~~K~~Dg~~plGp~iv~~~~~-d~~~l~i~~~vNGe~~Q~g~t~dmi~~v~~LI~~lS~~~t  181 (500)
T PRK12764        106 LGVYDLRYAD---KGSNLRSKGGDGFTPIGPALISARGV-DPAQLRVRTWVNGELVQDDTTEDLLFPFAQLVADLSQLLT  181 (500)
T ss_pred             eeeehhhhhh---cCCcccccccCccEecCCCccCcccc-CccceEEEEEECCEEEEeccHHHhcCCHHHHHHHHhcCCC
Confidence            5889999864   24688999999999999996 77887 8999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcccccCCCcc
Q psy9188          80 LEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      |+|||||+||||.|++++++||+.
T Consensus       182 L~pGDvIlTGTp~g~~~l~pGD~v  205 (500)
T PRK12764        182 LEEGDVILTGTPAGSSVAAPGDVV  205 (500)
T ss_pred             cCCCCEEEeCCCCCCeecCCCCEE
Confidence            999999999999999999999974

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit

Probab=99.94  E-value=1.3e-27  Score=172.86  Aligned_cols=98  Identities=24%  Similarity=0.353  Sum_probs=90.1

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+|+.+.     ..+|.++|+||+++++|||++.+++.|+.++.+++++||+++|++++++|+|++.++|+++|++++|
T Consensus        94 it~~~~~~-----~~~~~~~k~~dg~~~lGp~v~~~~~~d~~~~~~~l~vng~~~~~g~~~~~~~~~~~li~~ls~~~~L  168 (205)
T TIGR02305        94 VSLPEDSY-----YRPAIKAKCRDGFCPIGPEVPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQLISELSEFMTL  168 (205)
T ss_pred             eehhhhhc-----cCcchhhcccCCccccCCcccHHHcCCccccEEEEEECCEEEEeeCHHHhCcCHHHHHHHHhCCCCc
Confidence            35666543     4579999999999999999887788889999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||.++.++++||+.
T Consensus       169 ~aGdvI~TGT~~g~~~l~~Gd~v  191 (205)
T TIGR02305       169 NPGDVLLLGTPEARVEVGPGDRV  191 (205)
T ss_pred             CCCCEEEeCCCCCCeecCCCCEE
Confidence            99999999999999999999975

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>PLN02856 fumarylacetoacetase

Probab=99.94  E-value=1.9e-27  Score=187.43  Aligned_cols=99  Identities=18%  Similarity=0.123  Sum_probs=84.4

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCC--------------------CCCCeeEEEEE--------C
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIK--------------------DPDDVPLWLKV--------N   51 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~--------------------~~~~l~i~~~v--------N   51 (104)
                      |||||+|.+++ ..++|+++|+||++  +|||| |.++++                    +..+++|.++|        |
T Consensus       241 ~SARDiQ~wE~-~plgpf~gKsF~t~--igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~n  317 (424)
T PLN02856        241 WSARDIQKWEY-VPLGPFLGKSFATT--ISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSK  317 (424)
T ss_pred             chhhhhhhhhc-ccCCcccccCCCCC--CcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCccc
Confidence            79999999876 45667899999975  99997 778773                    22356677777        6


Q ss_pred             CEEEeecccCccCCCHHHHHHH-HHcCCccCCCcEEEcCCCCCcccccCCCc
Q psy9188          52 GELRQKSTTGDMLFKTGDLISY-ISQHMTLEPYDLILTGKAGFILMFQQSPH  102 (104)
Q Consensus        52 G~~~q~~~t~~m~~~~~~lia~-~s~~~tL~pGDvi~tGTp~g~~~~~~g~~  102 (104)
                      |+++|++++++|+|+++|+|+| +|++++|+|||||+||||+|+++.+.|+.
T Consensus       318 g~~~q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~l  369 (424)
T PLN02856        318 ASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCL  369 (424)
T ss_pred             ceeEEcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCE
Confidence            6899999999999999999997 58999999999999999999998888764

>TIGR01266 fum_ac_acetase fumarylacetoacetase

Probab=99.94  E-value=4.9e-27  Score=184.81  Aligned_cols=99  Identities=21%  Similarity=0.158  Sum_probs=86.9

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCC---------C-------------CCeeEEEEECCE----
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKD---------P-------------DDVPLWLKVNGE----   53 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~---------~-------------~~l~i~~~vNG~----   53 (104)
                      |||||+|.+++. .+.|+++|+||++  +|||| |++++++         +             .+++++++|||+    
T Consensus       233 ~SARDiQ~wE~~-plgpf~~KsF~ts--igPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~  309 (415)
T TIGR01266       233 WSARDIQAWEYV-PLGPFLAKSFGTT--ISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSE  309 (415)
T ss_pred             cchhhhhhhhcc-ccCccccccCCCC--CcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcc
Confidence            799999998875 4567899999996  99997 7888741         1             267888899987    


Q ss_pred             --EEeecccCccCCCHHHHHHHHH-cCCccCCCcEEEcCCCCCcccccCCCc
Q psy9188          54 --LRQKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQSPH  102 (104)
Q Consensus        54 --~~q~~~t~~m~~~~~~lia~~s-~~~tL~pGDvi~tGTp~g~~~~~~g~~  102 (104)
                        ++|++++++|+|+++|+|+|+| ++++|+|||||+||||+|+.+.+.|+.
T Consensus       310 ~~~~q~~~~~~M~ws~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~  361 (415)
T TIGR01266       310 PATICRSNFKHMYWTMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSM  361 (415)
T ss_pred             cceEEcCCHHhcCcCHHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcE
Confidence              7999999999999999999999 689999999999999999999888874

This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I

Probab=99.93  E-value=2.2e-27  Score=172.16  Aligned_cols=102  Identities=35%  Similarity=0.524  Sum_probs=91.3

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      +|+|++|...+ .+.+|..+|+||+++++|||+ +++++.++.++++++++||+++|++++++|+|++.++|+|+|+.++
T Consensus        94 ~~~r~~~~~~~-~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~~~~~~~l~vnG~~~~~~~~~~~~~~~~~ll~~ls~~~~  172 (218)
T PF01557_consen   94 VTARDLQWRER-PGLPWIADKSFDGSLVLGPWVVPPDELPDLRDLRLRLRVNGEVVQSGSTSDMLGDPAELLAWLSRGLT  172 (218)
T ss_dssp             EEEHHHHHHHH-HTHSSHHHHSSTTCEEEEEEEEEHSSHSGTTSEEEEEEETTEEEEEEEGGGBSSSHHHHHHHHHTTS-
T ss_pred             cchhhhhhhhh-cccchhhccCcCcceeecccccccccccCcceEEEEEEECCEEEEeccchhHHhhHHHHHHHHhCCCC
Confidence            47899998876 566899999999999999997 8888888899999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcc------cccCCCcc
Q psy9188          80 LEPYDLILTGKAGFIL------MFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~------~~~~g~~~  103 (104)
                      |+|||+|+||||.|+.      .+++||++
T Consensus       173 L~aGdvI~TGt~~G~~~~~~~~~l~~Gd~v  202 (218)
T PF01557_consen  173 LRAGDVILTGTPTGVGARPPPVPLQPGDRV  202 (218)
T ss_dssp             B-TTEEEEEEESSTSEGSSCCEEEBTT-EE
T ss_pred             CCcceEEEcCCcCCCCcccccccCCCCcEE
Confidence            9999999999998754      89999974

; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase

Probab=99.69  E-value=5.8e-17  Score=120.78  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=68.3

Q ss_pred             CCCcCcccCCCC-cccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHc-----CCccCCCcEEE
Q psy9188          15 LPWTVGKSFDTA-CPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLIL   87 (104)
Q Consensus        15 ~~~~~~K~~d~~-~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~-----~~tL~pGDvi~   87 (104)
                      .+|..+|+.-+. ..+|+.+ .++.+ +..++.+++++||+++|++++++|+++|.++|+|+++     +++|+|||+|+
T Consensus       147 ~~~~~Ad~~~~~~~V~g~~~~~~~~~-~l~~~~~~l~vnG~~~~~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdiV~  225 (255)
T TIGR03220       147 IQDTVADNASCGVFVLGDTRVDPRKL-DLALCGMVLEKNGEIVSTGAGAAALGSPVNAVAWLANTLGRLGIPLKAGEVIL  225 (255)
T ss_pred             ccceeeecCCcceEEECCCcCCcccc-ChhhCceEEEECCEEEeecchhhccCCHHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence            356677762111 2223332 12222 4455667899999999999999999999999999997     88999999999


Q ss_pred             cCCCCCcccccCCCcc
Q psy9188          88 TGKAGFILMFQQSPHS  103 (104)
Q Consensus        88 tGTp~g~~~~~~g~~~  103 (104)
                      ||||.++.++++||++
T Consensus       226 TGt~~g~~~v~~Gd~v  241 (255)
T TIGR03220       226 SGSLAALVPVKAGDNL  241 (255)
T ss_pred             CCCCCCCeeCCCCCEE
Confidence            9999999999999975

Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional

Probab=99.63  E-value=4.8e-16  Score=116.26  Aligned_cols=76  Identities=14%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             cccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcC-----CccCCCcEEEcCCCCCcccccCC
Q psy9188          27 CPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQH-----MTLEPYDLILTGKAGFILMFQQS  100 (104)
Q Consensus        27 ~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~-----~tL~pGDvi~tGTp~g~~~~~~g  100 (104)
                      ..+|+.+ ..+++ |+.++.+++++||+++|++++++|+++|.++|+|+++.     ++|+|||||+||||.++.++++|
T Consensus       164 ~VlG~~~~~~~~~-d~~~~~~~l~vng~~~q~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~~~l~~G  242 (262)
T PRK11342        164 YVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPMVAVNAG  242 (262)
T ss_pred             EEECCCcCCcccC-ChhhCEEEEEECCEEEEEEcHHHhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCCeeCCCC
Confidence            3567654 44555 78899999999999999999999999999999999875     69999999999999999999999


Q ss_pred             Ccc
Q psy9188         101 PHS  103 (104)
Q Consensus       101 ~~~  103 (104)
                      |++
T Consensus       243 d~v  245 (262)
T PRK11342        243 DRF  245 (262)
T ss_pred             CEE
Confidence            975

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase

Probab=99.41  E-value=3e-13  Score=101.62  Aligned_cols=75  Identities=15%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             ccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHc-----CCccCCCcEEEcCCCCCcccccCCC
Q psy9188          28 PVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLILTGKAGFILMFQQSP  101 (104)
Q Consensus        28 p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~-----~~tL~pGDvi~tGTp~g~~~~~~g~  101 (104)
                      .+|+.+ .++++ |+.++.+++++||+++++|++++|+.+|.+.++|+++     ..+|+|||+|+|||+.++.++++||
T Consensus       172 v~G~~~~~~~~~-dl~~~~~~l~~nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G~  250 (267)
T TIGR02312       172 VLGGRPVRPDAL-DLRWVGAILYRNGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSGD  250 (267)
T ss_pred             EECCCCCCcccc-ChhhcccEEEECCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCCC
Confidence            678754 45555 7788899999999999999999999999999999975     4599999999999999999999999


Q ss_pred             cc
Q psy9188         102 HS  103 (104)
Q Consensus       102 ~~  103 (104)
                      ++
T Consensus       251 ~~  252 (267)
T TIGR02312       251 TF  252 (267)
T ss_pred             EE
Confidence            75

This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.

>KOG2843|consensus

Probab=99.36  E-value=6.4e-13  Score=101.11  Aligned_cols=93  Identities=25%  Similarity=0.217  Sum_probs=73.8

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCC--------------------CCCCeeEEEEEC----C---
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIK--------------------DPDDVPLWLKVN----G---   52 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~--------------------~~~~l~i~~~vN----G---   52 (104)
                      |||||+|++|..+-+| +.+|+|-+  .++||+ +.+.+.                    +|.+++|.+.||    |   
T Consensus       235 WSARDIQkWEYVPLGP-FlaKsfgT--TvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~  311 (420)
T KOG2843|consen  235 WSARDIQKWEYVPLGP-FLAKSFGT--TVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNE  311 (420)
T ss_pred             cchhhcccceeecccc-hhhhhccc--ccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccc
Confidence            7999999998876555 79999976  799996 544442                    234555555552    2   


Q ss_pred             -EEEeecccCccCCCHHHHHHHHH-cCCccCCCcEEEcCCCCCccc
Q psy9188          53 -ELRQKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTGKAGFILM   96 (104)
Q Consensus        53 -~~~q~~~t~~m~~~~~~lia~~s-~~~tL~pGDvi~tGTp~g~~~   96 (104)
                       ..++..|...|+|++-+.+++.+ ..|.|+|||++.+||.+|..+
T Consensus       312 ~a~icKsNFKhlYWT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep  357 (420)
T KOG2843|consen  312 DALICKSNFKHLYWTPLQQLAHHTVNGCNLRPGDLLASGTISGPEP  357 (420)
T ss_pred             cceeecccchhhhhhHHHHhhhcccccccCCccceeccccccCCCC
Confidence             47788999999999999999986 689999999999999998754

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase

Probab=98.90  E-value=5.7e-09  Score=78.35  Aligned_cols=76  Identities=9%  Similarity=0.119  Sum_probs=66.5

Q ss_pred             cccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHH-----cCCccCCCcEEEcCCCCCcccccCC
Q psy9188          27 CPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS-----QHMTLEPYDLILTGKAGFILMFQQS  100 (104)
Q Consensus        27 ~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s-----~~~tL~pGDvi~tGTp~g~~~~~~g  100 (104)
                      ..+||.+ ..+.+ |+.++.+++++||+++++++.++..-+|.+.++|+.     +...|++||+|+||+..+..++.+|
T Consensus       168 ~vlG~~~~~~~~~-dl~~~~~~l~~~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~tGs~t~~~~v~~G  246 (263)
T TIGR03218       168 FVTGGRAANVEDL-DLRTLGVVMEKNGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIMSGGITEAVAVAPG  246 (263)
T ss_pred             EEECCCCCCcccc-CHhhCcEEEEECCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEECCcCcCceecCCC
Confidence            3678875 34444 788899999999999999999999999999999986     4679999999999999999999999


Q ss_pred             Ccc
Q psy9188         101 PHS  103 (104)
Q Consensus       101 ~~~  103 (104)
                      +++
T Consensus       247 ~~~  249 (263)
T TIGR03218       247 DSV  249 (263)
T ss_pred             CEE
Confidence            875

Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.67  E-value=4.5e-08  Score=73.43  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             cccCC-cccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHH-----cCCccCCCcEEEcCCCCCcccccCC
Q psy9188          27 CPVSD-FIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS-----QHMTLEPYDLILTGKAGFILMFQQS  100 (104)
Q Consensus        27 ~p~Gp-~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s-----~~~tL~pGDvi~tGTp~g~~~~~~g  100 (104)
                      ..||| ++.++++ |..++...+++||+.++.+..+..+.+|..-++|++     ...+|+.||||+||.-.+..+.++|
T Consensus       166 ~ViG~~~~~~~~l-d~~~~~~~l~rng~~~e~g~~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~~g  244 (264)
T COG3971         166 FVIGGRAVKPDDL-DLRNVGATLYRNGVEEETGVGAAVLGHPAAALAWLANKLAAYGVPLKAGDIVLTGSFTGPVPARPG  244 (264)
T ss_pred             eEECCCCCCchhh-hhhhccceeeecCEEEEeeechhhcCCcHHHHHHHHHHHHHcCCCcccCcEEecCccCccccCCCC
Confidence            36786 5666666 889999999999999999999999999999999987     4899999999999999999999999


Q ss_pred             Ccc
Q psy9188         101 PHS  103 (104)
Q Consensus       101 ~~~  103 (104)
                      |+.
T Consensus       245 d~~  247 (264)
T COG3971         245 DTF  247 (264)
T ss_pred             CEE
Confidence            974

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]

Probab=98.30  E-value=1.1e-06  Score=67.76  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=69.0

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCC---CCeeEEEEECCEEE--e--ecccCccCCCHHHHHH
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDP---DDVPLWLKVNGELR--Q--KSTTGDMLFKTGDLIS   72 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~---~~l~i~~~vNG~~~--q--~~~t~~m~~~~~~lia   72 (104)
                      +++||+..+   +.+...++|....+|.+||+| .-||.-.+   ...+|++.|.|+-.  -  ..+++.|-.++.+++.
T Consensus       221 VnlRD~Egr---saLlL~kaKdnnasCaiGPfIrlfDe~f~~~dv~~a~vtLkv~gedgf~l~G~snm~~isR~p~~l~~  297 (379)
T COG3970         221 VNLRDFEGR---SALLLSKAKDNNASCAIGPFIRLFDETFTIDDVKSAEVTLKVTGEDGFFLEGSSNMAEISRSPEELVI  297 (379)
T ss_pred             ccccccccc---cchhcccccccCccccccceEEeecCCCChhhhhhceEEEEEEccCceEEeccccHHhhccCHHHHHH
Confidence            468999876   667778999999999999998 66665444   45559999988633  2  3457899998887665


Q ss_pred             H-HHcCCccCCCcEEEcCCCC
Q psy9188          73 Y-ISQHMTLEPYDLILTGKAG   92 (104)
Q Consensus        73 ~-~s~~~tL~pGDvi~tGTp~   92 (104)
                      . +-+.....-|-++++||.-
T Consensus       298 Q~l~~~hqyPDG~~lflGTmf  318 (379)
T COG3970         298 QALNRDHQYPDGFALFLGTMF  318 (379)
T ss_pred             HHhccCCCCCCceeEEeeeee
Confidence            5 5678899999999999953

>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function

Probab=97.23  E-value=0.00041  Score=50.32  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=59.3

Q ss_pred             cccCCcc-cCCCCC-CCCCeeEEEEE--CC--EEEeecccCccCCCHHHHHHHHH-cCCccCCCcEEEcCCCCCcccccC
Q psy9188          27 CPVSDFI-PEHEIK-DPDDVPLWLKV--NG--ELRQKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQ   99 (104)
Q Consensus        27 ~p~Gp~i-~~~~~~-~~~~l~i~~~v--NG--~~~q~~~t~~m~~~~~~lia~~s-~~~tL~pGDvi~tGTp~g~~~~~~   99 (104)
                      .|+++-+ ..+++. .+..+.++.++  ||  ++.|+|+.++| .++.++++.+. ....+.+|-++++||.+-.+.+++
T Consensus        95 Kpva~~~W~~~dV~dhWD~l~Lrsw~~~dg~~~lYQeGtla~l-l~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~  173 (194)
T PF11010_consen   95 KPVAREAWRLDDVADHWDELELRSWITEDGERVLYQEGTLAAL-LPPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRP  173 (194)
T ss_pred             ccchhhcCcHHHHHhhhhheeEEEEEeeCCCEEEEeecchhhc-CCHHHHHHhhhccCCCCCCCEEEEEeccccccCccc
Confidence            5788732 334443 56778888884  44  68899999866 58999999999 678899999999999888888888


Q ss_pred             CCcc
Q psy9188         100 SPHS  103 (104)
Q Consensus       100 g~~~  103 (104)
                      ++++
T Consensus       174 a~~f  177 (194)
T PF11010_consen  174 ADRF  177 (194)
T ss_pred             cceE
Confidence            8764

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=86.11  E-value=2  Score=25.14  Aligned_cols=24  Identities=29%  Similarity=0.256  Sum_probs=17.2

Q ss_pred             EEEEECCEEEeecccCccCCCHHHHHHHH
Q psy9188          46 LWLKVNGELRQKSTTGDMLFKTGDLISYI   74 (104)
Q Consensus        46 i~~~vNG~~~q~~~t~~m~~~~~~lia~~   74 (104)
                      |.+.+||+.++-   ..+  ++.++++++
T Consensus         1 m~i~~Ng~~~~~---~~~--tl~~Ll~~l   24 (65)
T PRK06488          1 MKLFVNGETLQT---EAT--TLALLLAEL   24 (65)
T ss_pred             CEEEECCeEEEc---CcC--cHHHHHHHc
Confidence            467889988886   222  788888876

>cd01617 DCX Ubiquitin-like domain of DCX

Probab=83.26  E-value=1.5  Score=27.10  Aligned_cols=51  Identities=12%  Similarity=0.006  Sum_probs=40.7

Q ss_pred             eEEEEECCEEEeecc----cCccCCCHHHHHHHHHcCCccCCCcEEEcCCCCCcc
Q psy9188          45 PLWLKVNGELRQKST----TGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFIL   95 (104)
Q Consensus        45 ~i~~~vNG~~~q~~~----t~~m~~~~~~lia~~s~~~tL~pGDvi~tGTp~g~~   95 (104)
                      .|.+..||.....+.    ....+-+++.++.++++-+.|.+|-|=---|+.|..
T Consensus         2 ~I~~~rNGD~~~~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~   56 (80)
T cd01617           2 RVVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGH   56 (80)
T ss_pred             EEEEEECCCCCCCCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCe
Confidence            467788888777664    244667999999999999999999988888887743

DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
1saw_A	225	X-Ray Structure Of Homo Sapiens Protein Flj36880 Le		8e-22
1nr9_A	223	Crystal Structure Of Escherichia Coli 1262 (Apc5008		3e-15
3s52_A	221	Crystal Structure Of A Putative Fumarylacetoacetate		2e-14
1wzo_A	246	Crystal Structure Of The Hpce From Thermus Thermoph		3e-13
3v77_A	224	Crystal Structure Of A Putative Fumarylacetoacetate		8e-12
1i7o_A	429	Crystal Structure Of Hpce Length = 429		2e-11
1nkq_A	259	Crystal Structure Of Yeast Ynq8, A Fumarylacetoacet		1e-09
3rr6_A	265	Structure Of A Putative Uncharacterized Protein Fro		1e-09
3qdf_A	268	Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-D		5e-09
2dfu_A	264	Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1		9e-09
4dbf_A	288	Crystal Structures Of Cg1458 Length = 288		8e-06
3r6o_A	329	Crystal Structure Of A Probable 2-Hydroxyhepta-2,4-		1e-04

>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880 Length = 225

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct: 109 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 168
Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               +ISY+S+ +TLE  D+ILTG
Sbjct: 169 SIPYIISYVSKIITLEEGDIILTG 192

>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008), Putative Isomerase Length = 223

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIK-DPDDVPLWLKVNGELRQKSTTGDML 64
           +Q   ++ G PW   K+FD +CP+S FIP  E   DP +  L L VNGE RQ+ TT D +
Sbjct: 109 VQGKXKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADXI 168
Query: 65  FKTGDLISYISQHMTLEPYDLILTG 89
            K   LI+Y S+  TL+  D++LTG
Sbjct: 169 HKIVPLIAYXSKFFTLKAGDVVLTG 193

>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate Hydrolase Family Protein From Yersinia Pestis Co92 Length = 221

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           LQ   ++ G PW   K+FD +CP+S FIP  E  D     L L +NGE+RQ+  T D + 
Sbjct: 110 LQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDXIT 169
Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               LISY S+  TL   D++LTG
Sbjct: 170 PIIPLISYXSRFFTLRAGDIVLTG 193

>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus Hb8 Length = 246

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 16  PWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLK--VNGELRQKSTTGDMLFKTGDLISY 73
           P    K  DT  P+  F+   E++DP D  LWL+  VNGELRQ+  T  ML+   +L+ +
Sbjct: 141 PPIRAKGRDTFLPLGPFLVVEEVEDPQD--LWLRAYVNGELRQEGHTSRMLYSVAELLEF 198
Query: 74  ISQHMTLEPYDLILTG 89
           IS+ MTLEPYD++LTG
Sbjct: 199 ISEFMTLEPYDVLLTG 214

>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA Length = 224

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPD--DVPLWLKVNGELRQKSTTGDM 63
           +Q   +E G PW   KSFD ACP+++F+  +   + +   + L L+ NG+ +Q+ ++ + 
Sbjct: 106 VQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEX 165
Query: 64  LFKTGDLISYISQHMTLEPYDLILTG 89
           LF    LI++ S+H +L+P D+ILTG
Sbjct: 166 LFPILPLIAHXSEHFSLQPGDVILTG 191

>pdb|1I7O|A Chain A, Crystal Structure Of Hpce Length = 429

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 21  KSFDTACP-VSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 79
           KS D   P +S  +P+  I DP ++ L   VNGELRQ+ TT D++F    LI+Y+S+ MT
Sbjct: 325 KSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT 384
Query: 80  LEPYDLILTG 89
           L P D+I TG
Sbjct: 385 LNPGDMIATG 394

>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate Hydrolase Family Protein Length = 259

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKD-----PDDVPLWLKVNGELRQKSTT 60
           +Q  A++ GLPWT+ K FDT  P+S  +   +         D   +   VNG+LRQ   T
Sbjct: 127 VQDEAKKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGT 186
Query: 61  GDMLFKTGDLISYISQHMTLEPYDLILTG 89
              L     ++ +IS  ++LEP D+ILTG
Sbjct: 187 NLXLHPLHKILQHISTXISLEPGDIILTG 215

>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 7   QKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
           + H R  G  WT  K  DT CP+  +I      DP D+ +  +VNG++RQ+S T  +L  
Sbjct: 153 RDHQRADGQ-WTRAKGHDTFCPLGPWIVTD--LDPADLEIRTEVNGQVRQRSRTSLLLHD 209
Query: 67  TGDLISYISQHMTLEPYDLILTG 89
            G ++ ++S  MTL P D+ILTG
Sbjct: 210 VGAIVEWVSAVMTLLPGDVILTG 232

>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Mycobacterium Marinum Length = 268

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 17  WTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ 76
           WT  K  DT CPV  +I      DP D+ L  +VNG ++Q + T  M+   G ++ +IS 
Sbjct: 165 WTRAKGHDTFCPVGPWIVTD--VDPADLELRTEVNGAVKQHARTSLMIHDVGAIVEWISA 222
Query: 77  HMTLEPYDLILTG 89
            MTL P DLILTG
Sbjct: 223 VMTLLPGDLILTG 235

>pdb|2DFU|A Chain A, Crystal Structure Of The 2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From Thermus Thermophilus Hb8 Length = 264

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 8   KHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKT 67
           +  ++  L W   KS D   P+  ++ E ++ +P D  +   VNG LRQ+  T  M+F  
Sbjct: 149 RDVQKKDLQWVRAKSADKFLPLGPWL-ETDL-NPQDTWVRTYVNGTLRQEGHTSQMIFSV 206
Query: 68  GDLISYISQHMTLEPYDLILTG 89
            +++SYIS  MTLEP D++LTG
Sbjct: 207 AEILSYISTFMTLEPLDVVLTG 228

>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458 Length = 288

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 17  WTVGKSFDTACPVSDFIPEHEIK--DPDDVPLWLKV--NGE--LRQKSTTGDMLFKTGDL 70
           W   K  DT  P+  +I E +I   D D++P+  ++  +GE  L+Q S +  M+ K G++
Sbjct: 180 WARAKGIDTFGPIGPWI-ETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEI 238
Query: 71  ISYISQHMTLEPYDLILTG 89
           I +I+  MTL P D+I TG
Sbjct: 239 IEFITASMTLLPGDVIATG 257

>pdb|3R6O|A Chain A, Crystal Structure Of A Probable 2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From Mycobacterium Abscessus Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 48  LKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 92
           L++NGELRQ  +T DM     +++  +S  + L   D+ILTG  G
Sbjct: 242 LRINGELRQSGSTVDMTLGFAEVVETVSATIALRAGDIILTGTPG 286

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	1e-44
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	3e-44
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	6e-42
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	5e-41
1wzo_A	246	HPCE; structural genomics, riken structural genomi	6e-36
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	2e-33
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	2e-31
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	2e-32
3rr6_A	265	Putative uncharacterized protein; structural genom	7e-32
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	7e-31
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	1e-28
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	7e-21
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	3e-05

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225

 Score =  142 bits (361), Expect = 1e-44
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+F
Sbjct: 109 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 168

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               +ISY+S+ +TLE  D+ILTG
Sbjct: 169 SIPYIISYVSKIITLEEGDIILTG 192

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221

 Score =  141 bits (359), Expect = 3e-44
 Identities = 37/84 (44%), Positives = 50/84 (59%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           LQ   ++ G PW   K+FD +CP+S FIP  E  D     L L +NGE+RQ+  T DM+ 
Sbjct: 110 LQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMIT 169

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               LISY+S+  TL   D++LTG
Sbjct: 170 PIIPLISYMSRFFTLRAGDIVLTG 193

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259

 Score =  134 bits (340), Expect = 5e-41
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDP-----DDVPLWLKVNGELRQKSTT 60
           +Q  A++ GLPWT+ K FDT  P+S  +   +         D   +   VNG+LRQ   T
Sbjct: 127 VQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGT 186

Query: 61  GDMLFKTGDLISYISQHMTLEPYDLILTG 89
             ML     ++ +IS  ++LEP D+ILTG
Sbjct: 187 NLMLHPLHKILQHISTMISLEPGDIILTG 215

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246

 Score =  121 bits (305), Expect = 6e-36
 Identities = 34/79 (43%), Positives = 47/79 (59%)

Query: 11  REHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDL 70
                P    K  DT  P+  F+   E++DP D+ L   VNGELRQ+  T  ML+   +L
Sbjct: 136 TNTFRPPIRAKGRDTFLPLGPFLVVEEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAEL 195

Query: 71  ISYISQHMTLEPYDLILTG 89
           + +IS+ MTLEPYD++LTG
Sbjct: 196 LEFISEFMTLEPYDVLLTG 214

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score =  118 bits (298), Expect = 2e-33
 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 11  REHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
             +  P    KS D   P+   I P+  I DP ++ L   VNGELRQ+ TT D++F    
Sbjct: 315 ENYYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPF 374

Query: 70  LISYISQHMTLEPYDLILTG 89
           LI+Y+S+ MTL P D+I TG
Sbjct: 375 LIAYLSEFMTLNPGDMIATG 394

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score =  113 bits (284), Expect = 2e-31
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 16  PWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 75
           P    K  D  CP+ + +    + + D++ ++ ++NG       T D+      L+S +S
Sbjct: 105 PAIKAKCRDGFCPIGETV---ALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALS 161

Query: 76  QHMTLEPYDLILTG 89
           +  TL P D IL G
Sbjct: 162 EFATLNPGDAILLG 175

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264

 Score =  112 bits (283), Expect = 2e-32
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 10  AR---EHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
           AR   +  L W   KS D   P+  ++ E ++ +P D  +   VNG LRQ+  T  M+F 
Sbjct: 148 ARDVQKKDLQWVRAKSADKFLPLGPWL-ETDL-NPQDTWVRTYVNGTLRQEGHTSQMIFS 205

Query: 67  TGDLISYISQHMTLEPYDLILTG 89
             +++SYIS  MTLEP D++LTG
Sbjct: 206 VAEILSYISTFMTLEPLDVVLTG 228

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265

 Score =  111 bits (280), Expect = 7e-32
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 12  EHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLI 71
                WT  K  DT CP+  +I   ++ DP D+ +  +VNG++RQ+S T  +L   G ++
Sbjct: 157 RADGQWTRAKGHDTFCPLGPWI-VTDL-DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIV 214

Query: 72  SYISQHMTLEPYDLILTG 89
            ++S  MTL P D+ILTG
Sbjct: 215 EWVSAVMTLLPGDVILTG 232

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329

 Score =  110 bits (276), Expect = 7e-31
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 6   LQKHAREHGLP----WTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTT 60
           +       G P       GK + T CP   ++         +     L++NGELRQ  +T
Sbjct: 195 VALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGST 254

Query: 61  GDMLFKTGDLISYISQHMTLEPYDLILTG 89
            DM     +++  +S  + L   D+ILTG
Sbjct: 255 VDMTLGFAEVVETVSATIALRAGDIILTG 283

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293

 Score =  103 bits (258), Expect = 1e-28
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 11  REHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELR----QKSTTGDMLF 65
            E+ L     K +   C     I    EIK+P  + + LK+  E R        T  M  
Sbjct: 172 AENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRR 231

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
           K  + I Y+ +   +    ++ TG
Sbjct: 232 KIEEQIQYLIRDNPIPDGTILTTG 255

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359

 Score = 83.8 bits (207), Expect = 7e-21
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPV---SDFIPEHEIKDPDDVPLWLKVNGELRQKSTTG- 61
           L       G  +   K      PV    + + E        +PL + +NGE   ++  G 
Sbjct: 197 LIPGELAKGFGFYQSKPSSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGI 256

Query: 62  DMLFKTGDLISYISQHMTLEPYDLILTG 89
           DM F    LI + ++   L    +I +G
Sbjct: 257 DMTFDFPQLIVHAARTRPLSAGTIIGSG 284

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 28/105 (26%)

Query: 13  HGLPWTVGKSFDT-----ACPVSDFIP----------------EHEIKDPDDVPLWLKVN 51
             L   +GKSF T       P+   +P                 H      D+ L + + 
Sbjct: 247 VPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLK 306

Query: 52  GELR------QKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTG 89
           GE         +S    M +     +++ S     L P DL+ +G
Sbjct: 307 GEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASG 351

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	100.0
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	100.0
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	100.0
4dbf_A	288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3rr6_A	265	Putative uncharacterized protein; structural genom	100.0
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	99.98
1wzo_A	246	HPCE; structural genomics, riken structural genomi	99.98
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	99.97
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	99.97
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	99.97
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.97
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.96
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	99.93
2wqt_A	270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	99.91
2eb4_A	267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	99.91
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	82.18

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A

Probab=100.00  E-value=2.1e-37  Score=225.55  Aligned_cols=103  Identities=37%  Similarity=0.576  Sum_probs=99.1

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|.+++.++.+|.++|+||+|||+|||++.++++|+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus       105 vs~Rd~q~~~~~~~~~~~~aK~~d~~~plGp~i~~~~~~d~~~l~i~l~vNGe~~q~g~t~~mi~~~~~lia~lS~~~tL  184 (221)
T 3s52_A          105 LTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTL  184 (221)
T ss_dssp             CEEHHHHHHHHHHTCCSHHHHSSTTCEEECCBEEHHHHCCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCB
T ss_pred             eEHHHHhhhhhccCCCcceeecCCCCccccCceehhhcCCccceEEEEEECCEEEEEEcHHHccCCHHHHHHHHhCCCCc
Confidence            68999999988889999999999999999999977788899999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++++++||+.
T Consensus       185 ~pGDvI~TGTp~Gvg~l~~GD~v  207 (221)
T 3s52_A          185 RAGDIVLTGTPQGVGPMQSGDML  207 (221)
T ss_dssp             CTTCEEECCCCSCCEEECTTCEE
T ss_pred             CCCCEEEeCCCCcceecCCCCEE
Confidence            99999999999999999999974

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1

Probab=100.00  E-value=5.6e-35  Score=212.89  Aligned_cols=103  Identities=44%  Similarity=0.755  Sum_probs=98.9

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|.++++.+.+|..+|+||+|||+|||++.+++.|+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus       104 vt~r~~q~~~~~~~~~~~~aK~~d~~~plGp~v~~~~~~d~~~l~l~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~tL  183 (225)
T 1saw_A          104 MTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITL  183 (225)
T ss_dssp             CEEHHHHHHHHHHTCCSHHHHCSTTCEEECCCEETTSCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred             ccHHHHhhhhhccCCCceEeecCCCCEecCCcccHHHcCCCceeEEEEEECCEEEEEEcHHHcCCCHHHHHHHHhCCCCc
Confidence            68999999887778999999999999999999988888899999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++++++||++
T Consensus       184 ~~GDvI~TGTp~Gvg~l~~Gd~v  206 (225)
T 1saw_A          184 EEGDIILTGTPKGVGPVKENDEI  206 (225)
T ss_dssp             CTTCEEECCCCSCCEEECTTCEE
T ss_pred             CCCCEEEcCCCCCceeCCCCCEE
Confidence            99999999999999999999974

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}

Probab=100.00  E-value=4.9e-35  Score=223.73  Aligned_cols=103  Identities=22%  Similarity=0.294  Sum_probs=94.2

Q ss_pred             CchhhhhhH----HHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188           1 MLFLFLQKH----AREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS   75 (104)
Q Consensus         1 ~TaRd~q~~----~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s   75 (104)
                      +|+||+|..    .+..+.+|.++|+||+|||+|||+ ++++++|+.++.|+++|||+++|++++++|+|++++||+|+|
T Consensus       190 vSaRd~q~~~g~~~~~~~~~w~~aK~fd~~~plGP~ivt~del~d~~~l~l~l~vNGe~~q~g~t~dMif~~~~lIa~lS  269 (329)
T 3r6o_A          190 ITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVETVS  269 (329)
T ss_dssp             CEEHHHHCTTC------CCCHHHHHCSTTSEEBCSCEEECTTCSSCCCCEEEEEETTEEEEEEEGGGCSSCHHHHHHHHH
T ss_pred             eEHHHHhhhhcccccccCCccccccCcCcCcccCCeEcChhhcCChhhcEEEEEECCEEEEecCHHHhcCCHHHHHHHHH
Confidence            689999863    223378899999999999999997 899999999999999999999999999999999999999999


Q ss_pred             cCCccCCCcEEEcCCCCCcc-------cccCCCcc
Q psy9188          76 QHMTLEPYDLILTGKAGFIL-------MFQQSPHS  103 (104)
Q Consensus        76 ~~~tL~pGDvi~tGTp~g~~-------~~~~g~~~  103 (104)
                      ++++|+|||||+||||+|++       ++++||+.
T Consensus       270 ~~~tL~pGDvI~TGTp~GvG~~~~p~~~l~~GD~V  304 (329)
T 3r6o_A          270 ATIALRAGDIILTGTPGGCGFQFDPPRYLRPGDVI  304 (329)
T ss_dssp             TTSCBCTTCEEECCCCSCCGGGSSSCCCCCTTCEE
T ss_pred             cCCCcCCCCEEEcCCccccCCCCCCCccCCCCCEE
Confidence            99999999999999999998       79999974

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A

Probab=100.00  E-value=7.9e-35  Score=219.30  Aligned_cols=99  Identities=27%  Similarity=0.399  Sum_probs=92.0

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECC----EEEeecccCccCCCHHHHHHHHH
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNG----ELRQKSTTGDMLFKTGDLISYIS   75 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG----~~~q~~~t~~m~~~~~~lia~~s   75 (104)
                      +|+||+|..    +.+|.++|+||+|||+|||| +..++.|+.+++|+++|||    +++|++++++|+|++++||+|+|
T Consensus       168 vsaRd~Q~~----~~~w~~aK~fd~~~plGP~ivt~~~~~d~~~l~i~~~vNG~~~~e~~Q~~~t~~mi~~~~~lIa~lS  243 (288)
T 4dbf_A          168 VSSRDLQFA----DGQWARAKGIDTFGPIGPWIETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFIT  243 (288)
T ss_dssp             CEEHHHHHH----HSSSHHHHHSTTCEEEEEEEECCGGGSCTTSCEEEEEEEETTEEEEEEEEEGGGBSSCHHHHHHHHH
T ss_pred             eEhHHhhhc----cCCccccccCCCCceeCCccccccccCCccccEEEEEEcCCcceEEEEecCHHHhcCCHHHHHHHHh
Confidence            689999985    46899999999999999998 5444458999999999999    99999999999999999999999


Q ss_pred             cCCccCCCcEEEcCCCCCcccccCCCcc
Q psy9188          76 QHMTLEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        76 ~~~tL~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +++||+|||||+||||+|++++++||+.
T Consensus       244 ~~~tL~pGDvI~TGTP~Gvg~l~~GD~v  271 (288)
T 4dbf_A          244 ASMTLLPGDVIATGSPAGTEAMVDGDYI  271 (288)
T ss_dssp             TTSCBCTTCEEECCCCSCCCBCCTTCEE
T ss_pred             CCCCcCCCCEEEcCCCCCCeecCCCCEE
Confidence            9999999999999999999999999974

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A

Probab=100.00  E-value=2.2e-34  Score=214.77  Aligned_cols=97  Identities=32%  Similarity=0.492  Sum_probs=90.7

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|..    +.+|.++|+||+|||+|||+.. ++ |+.+++|+++|||+++|++++++|+|+++++|+|+|+++||
T Consensus       150 vsaRd~q~~----~~~w~~aK~fd~~~plGP~ivt-~~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lIa~lS~~~tL  223 (265)
T 3rr6_A          150 VSARDHQRA----DGQWTRAKGHDTFCPLGPWIVT-DL-DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTL  223 (265)
T ss_dssp             CEEHHHHHH----HSSSHHHHHSTTCEEEEEEEES-SC-CGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCB
T ss_pred             eEhHHhhhc----cCCcceecccCCCcccCCcCcC-CC-CcccCEEEEEECCEEEEEECHHhhcCCHHHHHHHHhcCCCc
Confidence            689999974    4789999999999999999843 35 88999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++++++||+.
T Consensus       224 ~pGDvI~TGTp~Gvg~l~~GD~v  246 (265)
T 3rr6_A          224 LPGDVILTGTPEGVGPIVDGDTV  246 (265)
T ss_dssp             CTTCEEECCCCSCCEECCTTCEE
T ss_pred             CCCCEEEeCCCCCceeCCCCCEE
Confidence            99999999999999999999974

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1

Probab=99.98  E-value=1.9e-33  Score=208.95  Aligned_cols=103  Identities=32%  Similarity=0.480  Sum_probs=97.6

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCC-----CCeeEEEEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDP-----DDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS   75 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~-----~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s   75 (104)
                      +|+||+|.++++.+.+|.++|+||+|||+||||+.+++.++     .+++++++|||+++|++++++|+|++++||+|+|
T Consensus       122 vt~Rd~q~~~~~~~~~~~~aK~~d~~~p~Gp~V~~~~~~d~~~dl~~~l~l~l~vNGe~~q~g~t~~m~~~~~~Lia~lS  201 (259)
T 1nkq_A          122 LTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHIS  201 (259)
T ss_dssp             CEEHHHHHHHHHHTCCSHHHHHSTTCEEBCCCEEGGGGGGGTTCCTTTEEEEEEETTEEEEEEEGGGBSSCHHHHHHHHH
T ss_pred             eeHHHhhhhhhhcCCCcceeeccCcCCCcceEEECccccCcccccccceEEEEEECCEEEEEEcHHHcCCCHHHHHHHHh
Confidence            68999999887789999999999999999999977777777     8999999999999999999999999999999999


Q ss_pred             cCCccCCCcEEEcCCCCCcccccCCCcc
Q psy9188          76 QHMTLEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        76 ~~~tL~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      ++++|+|||||+||||+|++++++||++
T Consensus       202 ~~~tL~pGDvI~TGTp~Gvg~l~~GD~v  229 (259)
T 1nkq_A          202 TMISLEPGDIILTGTPAGVGELKPGDRV  229 (259)
T ss_dssp             TTSCBCTTCEEECCCCSCCEEECTTCEE
T ss_pred             CCCCcCCCCEEEeCCCCCcEecCCCCEE
Confidence            9999999999999999999999999975

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}

Probab=99.98  E-value=2.7e-33  Score=206.18  Aligned_cols=100  Identities=35%  Similarity=0.482  Sum_probs=92.2

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|...   ..+|.++|+||+|||+|||+..+++.|+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus       129 ~s~rd~q~~~---~~~~~~~K~~d~~~~lGp~i~~~~i~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL  205 (246)
T 1wzo_A          129 LVARDYVTNT---FRPPIRAKGRDTFLPLGPFLVVEEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMTL  205 (246)
T ss_dssp             CEEGGGC-------CCCHHHHCSTTCEEEEEEEECSCCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred             CchHHhcccc---cCCceeeccCCCCEEECCcCcHHHcCCCcccEEEEEECCEEEEeeCHHHhCCCHHHHHHHHhCCCCc
Confidence            5899999753   2789999999999999999777888889999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++++++||++
T Consensus       206 ~pGDvI~TGTp~gvg~l~~GD~v  228 (246)
T 1wzo_A          206 EPYDVLLTGTPKGISQVRPGDVM  228 (246)
T ss_dssp             CTTCEEECCCCCCSCEECTTCEE
T ss_pred             CCCCEEEeCCCCCceECCCCCEE
Confidence            99999999999999999999974

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}

Probab=99.97  E-value=1.3e-32  Score=204.76  Aligned_cols=97  Identities=33%  Similarity=0.539  Sum_probs=91.3

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|.+    ..+|.++|+||+|||+|||+.. ++ |+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus       146 vt~Rd~q~~----~~~~~~aK~~d~~~plGp~i~~-~~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL  219 (264)
T 2dfu_A          146 ITARDVQKK----DLQWVRAKSADKFLPLGPWLET-DL-NPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTL  219 (264)
T ss_dssp             CEEHHHHHH----SSSSHHHHCSTTCEEEEEEEES-SC-CTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred             eEhhhhhhc----cCCCceeecCCCCEEECCcCcc-cc-CCCccEEEEEECCEEEEEecHHHhhcCHHHHHHHHhcCCCc
Confidence            589999975    5799999999999999999844 56 89999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++++++||+.
T Consensus       220 ~pGDvI~TGTp~Gvg~l~~GD~v  242 (264)
T 2dfu_A          220 EPLDVVLTGTPEGVGALRPGDRL  242 (264)
T ss_dssp             CTTCEEECCCCSCCCBCCTTCEE
T ss_pred             CCCCEEEeCCCCCccccCCCCEE
Confidence            99999999999999999999975

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}

Probab=99.97  E-value=5.4e-32  Score=208.93  Aligned_cols=91  Identities=20%  Similarity=0.211  Sum_probs=86.0

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCC-----CCeeEEEEECCEEEeecc-cCccCCCHHHHHHH
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDP-----DDVPLWLKVNGELRQKST-TGDMLFKTGDLISY   73 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~-----~~l~i~~~vNG~~~q~~~-t~~m~~~~~~lia~   73 (104)
                      ||+||+|.+++.++.+|+++|+   |+++|||| |+|+++++     .+++|+++|||+++|+++ +++|+|++++||+|
T Consensus       192 ~SaRD~Q~~~~~~g~~~~~~K~---~~~~gP~iVt~del~~~~~~~~~~L~l~~~vNGe~~q~~~~t~~Mif~~~~lIa~  268 (359)
T 3lzk_A          192 VSLRGLIPGELAKGFGFYQSKP---SSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGIDMTFDFPQLIVH  268 (359)
T ss_dssp             CEETTTHHHHHHHTSCCSTTSC---CCEECSCEECHHHHGGGBCSSCBCSBEEEEETTEEEECCBTTSSCSSCHHHHHHH
T ss_pred             ccHHHhhhhhhccCCCcccccc---ccccCCccccHHHcCccccCCccceEEEEEECCEEEEcCcCcccccCCHHHHHHH
Confidence            7999999999888999999998   58999996 88888765     689999999999999999 99999999999999


Q ss_pred             HHcCCccCCCcEEEcCCCCCc
Q psy9188          74 ISQHMTLEPYDLILTGKAGFI   94 (104)
Q Consensus        74 ~s~~~tL~pGDvi~tGTp~g~   94 (104)
                      +|+++||+|||||+||||+|+
T Consensus       269 lS~~~tL~pGDvI~TGTpsGv  289 (359)
T 3lzk_A          269 AARTRPLSAGTIIGSGTVSNK  289 (359)
T ss_dssp             HTTTSCBCTTEEEECCSCCCC
T ss_pred             HhCCCCcCCCCEEEcCCcCCC
Confidence            999999999999999999998

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A

Probab=99.97  E-value=6.3e-32  Score=203.31  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=92.4

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEE--CCEEEeec--ccCccCCCHHHHHHHHH
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKV--NGELRQKS--TTGDMLFKTGDLISYIS   75 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~v--NG~~~q~~--~t~~m~~~~~~lia~~s   75 (104)
                      +|+||+|.+   .+.+|.++|+||+|||+|||+ +++++.|+.+++|+++|  ||+++|++  ++++|+|++++||+|+|
T Consensus       165 vs~Rd~q~~---~~~~~~~aK~~d~~~plGP~ivt~dei~d~~~l~i~l~v~~NGe~~q~g~~~t~~mi~~~~~li~~ls  241 (293)
T 2q18_X          165 VSARDLEAE---NPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLI  241 (293)
T ss_dssp             CEEHHHHHH---CGGGHHHHHCSTTCEEEEEEEECGGGCSCTTSCEEEEEEEETTEEEEEEEEEGGGBCSCHHHHHHHHH
T ss_pred             eEeehhhhh---cccCccccccCCCCEEECCcEeCHHHcCCcceeEEEEEEEECCEEEEECCCCHHHhccCHHHHHHHHH
Confidence            689999985   455678999999999999997 78888899999999988  99999998  69999999999999999


Q ss_pred             cCCccCCCcEEEcCC---CCCcccccCCCcc
Q psy9188          76 QHMTLEPYDLILTGK---AGFILMFQQSPHS  103 (104)
Q Consensus        76 ~~~tL~pGDvi~tGT---p~g~~~~~~g~~~  103 (104)
                      ++++|+|||||+|||   |.++.++++||+.
T Consensus       242 ~~~tL~pGDvI~TGTg~~p~~~~~l~~GD~v  272 (293)
T 2q18_X          242 RDNPIPDGTILTTGTAIVPGRDKGLKDEDIV  272 (293)
T ss_dssp             TTCCCCTTEEEECCCSCCCCTTCCCCTTCEE
T ss_pred             cCCCCCCCCEEECCCCCCCCCCcccCCCCEE
Confidence            999999999999999   9999999999974

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.97  E-value=1.7e-31  Score=209.68  Aligned_cols=99  Identities=35%  Similarity=0.419  Sum_probs=93.8

Q ss_pred             Cchhh-hhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCC
Q psy9188           1 MLFLF-LQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM   78 (104)
Q Consensus         1 ~TaRd-~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~   78 (104)
                      +|+|| +|.    ...||.++|+||+|||+|||+ +.++++|+.+++++++|||+++|++++++|+|+++++|+|+|+++
T Consensus       308 ~t~Rd~lq~----~~~~w~~~K~~d~~~~lGp~iv~~~~~~d~~~l~i~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~  383 (429)
T 1gtt_A          308 YAIRDYLEN----YYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFM  383 (429)
T ss_dssp             CEEGGGCCS----SSSSCHHHHSCTTCEEBCSCCEEGGGCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTS
T ss_pred             cccchhhhh----hcCCccccccCCCCEEECCcccCHHHcCCCccceEEEEECCEEEEEeCHHHcCCCHHHHHHHHhCCC
Confidence            58999 586    468999999999999999996 888998999999999999999999999999999999999999999


Q ss_pred             ccCCCcEEEcCCCCCcccccCCCcc
Q psy9188          79 TLEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        79 tL~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|+|||||+||||+|++++++||+.
T Consensus       384 tL~~GDvI~TGTp~gvg~l~~GD~v  408 (429)
T 1gtt_A          384 TLNPGDMIATGTPKGLSDVVPGDEV  408 (429)
T ss_dssp             CBCTTCEEECCCCSCCCBCCTTCEE
T ss_pred             CcCCCCEEEcCCCCCCeECCCCCEE
Confidence            9999999999999999999999975

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.96  E-value=5.8e-30  Score=200.91  Aligned_cols=95  Identities=22%  Similarity=0.303  Sum_probs=89.2

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|     .+.||.++|+||+|||+|||   +++.|+.+++|+++|||+++|++++++|+|+++++|+|+|++++|
T Consensus        95 ~s~Rd~~-----~~~~~~~aK~fd~~~~lGp~---~~~~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~li~~ls~~~tL  166 (429)
T 1gtt_A           95 VSLPEES-----FYRPAIKAKCRDGFCPIGET---VALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATL  166 (429)
T ss_dssp             CBSCCCC-----SSSCCHHHHCSTTCEEBCCC---BCCSCCTTCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred             eeehhhh-----ccCCccccCCCCCCEEECCh---hhcCCccccEEEEEECCEEEEeCCHHHhcCCHHHHHHHHhcCCCc
Confidence            5889866     35789999999999999999   667789999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++++++||+.
T Consensus       167 ~~GDvI~TGTp~g~~~l~~GD~v  189 (429)
T 1gtt_A          167 NPGDAILLGTPQARVEIQPGDRV  189 (429)
T ss_dssp             CTTCEEECCCCSCCCEECTTCEE
T ss_pred             CCCCEEEEeccCcceecCCCCEE
Confidence            99999999999999999999974

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A

Probab=99.93  E-value=3.4e-27  Score=185.26  Aligned_cols=98  Identities=20%  Similarity=0.178  Sum_probs=84.6

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCC--------------------CCC--CeeEEEEEC------
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIK--------------------DPD--DVPLWLKVN------   51 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~--------------------~~~--~l~i~~~vN------   51 (104)
                      ||+||+|.+++. +++|+++|+||++  +|||| ++++++                    ++.  +++++++||      
T Consensus       236 ~SaRdiQ~~e~~-plg~~~aK~f~t~--iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~  312 (421)
T 1hyo_A          236 WSARDIQQWEYV-PLGPFLGKSFGTT--ISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQ  312 (421)
T ss_dssp             CEEHHHHHHHCT-TTCCCHHHHTCEE--ECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSS
T ss_pred             ccHHhhhhhhcc-cCCCccccCcCCC--CCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCC
Confidence            799999998765 6778999999996  99997 666653                    233  688999999      


Q ss_pred             CEEEeecccCccCCCHHHHHHHHH-cCCccCCCcEEEcCCCCCcccccCCC
Q psy9188          52 GELRQKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQSP  101 (104)
Q Consensus        52 G~~~q~~~t~~m~~~~~~lia~~s-~~~tL~pGDvi~tGTp~g~~~~~~g~  101 (104)
                      |+++|++++++|+|+++++|+|+| ++++|+|||||+||||+|+++.+.|+
T Consensus       313 Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~  363 (421)
T 1hyo_A          313 AATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGS  363 (421)
T ss_dssp             CEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCB
T ss_pred             CEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcc
Confidence            999999999999999999999995 89999999999999999998654443

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A

Probab=99.91  E-value=1.4e-25  Score=166.96  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=79.7

Q ss_pred             CcccCCCCc--------ccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHc-----CCccCCCc
Q psy9188          19 VGKSFDTAC--------PVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYD   84 (104)
Q Consensus        19 ~~K~~d~~~--------p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~-----~~tL~pGD   84 (104)
                      ++|+||++|        ++|||+ +++++ |+.++.++++|||+++|++++++|+|+|.++|+|+|+     +++|+|||
T Consensus       149 ~~k~~d~~aDn~s~~~~~lGp~~v~~~~~-d~~~l~i~l~vNGe~~q~g~~~~ml~~p~~~v~~ls~~l~~~g~tL~~Gd  227 (270)
T 2wqt_A          149 SIQFVDTVADNASCGVYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGD  227 (270)
T ss_dssp             CCCHHHHHHTGGGCCEEEECBCCBCSTTC-CCSSCEEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTC
T ss_pred             CCChhcEEccCccCCCEeECcCcCCcccC-ChhhCeEEEEECCEEEEEEchhhccCCHHHHHHHHHHHHHhcCCCcCCCC
Confidence            389999998        999997 78887 8999999999999999999999999999999999998     79999999


Q ss_pred             EEEcCCCCCcccccCCCcc
Q psy9188          85 LILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        85 vi~tGTp~g~~~~~~g~~~  103 (104)
                      ||+||||.++.++++||++
T Consensus       228 vI~TGT~~g~~~l~~GD~v  246 (270)
T 2wqt_A          228 IILTGALGPMVAVNAGDRF  246 (270)
T ss_dssp             EEEEEESSCCEECCTTCEE
T ss_pred             EEEcCCCCCCeeCCCCCEE
Confidence            9999999999999999975

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A

Probab=99.91  E-value=1.9e-26  Score=171.36  Aligned_cols=87  Identities=13%  Similarity=0.148  Sum_probs=79.3

Q ss_pred             CCcCcc-cCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCC-----ccCCCcEEEc
Q psy9188          16 PWTVGK-SFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM-----TLEPYDLILT   88 (104)
Q Consensus        16 ~~~~~K-~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~-----tL~pGDvi~t   88 (104)
                      +|..+| +|++++|+|||+ +++++ |+.++.++++|||+++|++++++|+|+|.++|+|+|+++     +|+|||||+|
T Consensus       159 ~~~~Ad~~~~~~~~lGp~~v~~~~~-d~~~l~~~l~vNGe~~q~g~t~~ml~~p~~~i~~ls~~l~~~g~tL~~GDvI~T  237 (267)
T 2eb4_A          159 FDTISDNAANAGVILGGRPIKPDEL-DLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILG  237 (267)
T ss_dssp             HHHHHTGGGEEEEEECSCCBCTTSS-CGGGCEEEEEETTEEEEEEEGGGTTTSTTHHHHHHHHHHGGGTCCBCTTCEEEC
T ss_pred             cceeecccccccEEECCCcCCcccC-ChhhCeEEEEECCEEEEEecHHhcccCHHHHHHHHHHHHHHcCCCCCCCCEEEC
Confidence            455555 788999999986 77887 899999999999999999999999999999999999865     9999999999


Q ss_pred             CCCCCcccccCCCcc
Q psy9188          89 GKAGFILMFQQSPHS  103 (104)
Q Consensus        89 GTp~g~~~~~~g~~~  103 (104)
                      |||.++.++++||++
T Consensus       238 GT~~g~~~l~~GD~v  252 (267)
T 2eb4_A          238 GSFTRPVPARKGDTF  252 (267)
T ss_dssp             CCSSCCEECCTTCEE
T ss_pred             CCCCCCEECCCCCEE
Confidence            999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1sawa_	217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	1e-26
d1nkqa_	257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	3e-16
d1nr9a_	221	d.177.1.1 (A:) Putative isomerase YcgM {Escherichi	2e-14
d1gtta2	216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	1e-12
d1hyoa2	298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	5e-10
d1sv6a_	261	d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD	1e-06
d1gtta1	213	d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degrada	2e-06

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (238), Expect = 1e-26
 Identities = 44/85 (51%), Positives = 60/85 (70%)

Query: 5   FLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDML 64
            +Q   ++ GLPWT+ KSF  +CPVS F+P+ +I DP  + LWLKVNGELRQ+  T  M+
Sbjct: 100 DVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMI 159

Query: 65  FKTGDLISYISQHMTLEPYDLILTG 89
           F    +ISY+S+ +TLE  D+ILTG
Sbjct: 160 FSIPYIISYVSKIITLEEGDIILTG 184

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (168), Expect = 3e-16
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKD-----PDDVPLWLKVNGELRQKSTT 60
           +Q  A++ GLPWT+ K FDT  P+S  +   +         D   +   VNG+LRQ   T
Sbjct: 126 VQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGT 185

Query: 61  GDMLFKTGDLISYISQHMTLEPYDLILTG 89
             ML     ++ +IS  ++LEP D+ILTG
Sbjct: 186 NLMLHPLHKILQHISTMISLEPGDIILTG 214

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Length = 221

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (154), Expect = 2e-14
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 7   QKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           Q   ++ G PW   K+FD +CP+S FI       DP +  L L VNGE RQ+ TT DM+ 
Sbjct: 109 QGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIH 168

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
           K   LI+Y+S+  TL+  D++LTG
Sbjct: 169 KIVPLIAYMSKFFTLKAGDVVLTG 192

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

 Score = 58.7 bits (141), Expect = 1e-12
 Identities = 30/73 (41%), Positives = 42/73 (57%)

Query: 17  WTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ 76
             V         +S  +P+  I DP ++ L   VNGELRQ+ TT D++F    LI+Y+S+
Sbjct: 109 LRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSE 168

Query: 77  HMTLEPYDLILTG 89
            MTL P D+I TG
Sbjct: 169 FMTLNPGDMIATG 181

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (125), Expect = 5e-10
 Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 30/109 (27%)

Query: 11  REHGLPWTVGKSFDTACPVSDFIP-----------------------EHEIKDPDDVPLW 47
           +   +P            +S ++                         H      D+ L 
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182

Query: 48  L------KVNGELRQKSTTGDMLFKTGDLISYI-SQHMTLEPYDLILTG 89
           +              +S    M +     +++       L P DL+ +G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASG 231

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 13  HGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLIS 72
             +      +      +          D  +  + +  N E        + L    +   
Sbjct: 150 QFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAV 209

Query: 73  YISQHM-----TLEPYDLILTG 89
           ++++ M      L   D+ILTG
Sbjct: 210 WLARKMASLGEPLRTGDIILTG 231

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (97), Expect = 2e-06
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 6   LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
           +         P    K  D  CP+ + +      + D++ ++ ++NG       T D+  
Sbjct: 95  VSLPEESFYRPAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPADHWNTADLQR 151

Query: 66  KTGDLISYISQHMTLEPYDLILTG 89
               L+S +S+  TL P D IL G
Sbjct: 152 NAAQLLSALSEFATLNPGDAILLG 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1sawa_	217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1nr9a_	221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1nkqa_	257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	100.0
d1gtta1	213	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1gtta2	216	4-hydroxyphenylacetate degradation bifunctional is	99.97
d1hyoa2	298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	99.95
d1sv6a_	261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	99.35

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-39  Score=231.50  Aligned_cols=103  Identities=44%  Similarity=0.755  Sum_probs=100.3

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      +|+||+|.+++.++++|.++|+||+|||+||||+.+++.|+.+++|+++|||+++|++++++|+|++++||+|+|+++||
T Consensus        96 vt~Rd~q~~~~~~~~~~~~~K~~d~~~p~Gp~v~~d~~~d~~~l~i~~~VNGe~~Q~~~t~~mi~~~~eli~~lS~~~tL  175 (217)
T d1sawa_          96 MTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITL  175 (217)
T ss_dssp             CEEHHHHHHHHHHTCCSHHHHCSTTCEEECCCEETTSCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred             echhHHHHHHhhcCCCccccccccCcCcceeEEEHHHCCCccceEEEEEECCEEEEeCChHHhcccHHHHHHHHhCCceE
Confidence            69999999999999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++.+++||++
T Consensus       176 ~pGDvI~TGTP~Gvg~l~~GD~v  198 (217)
T d1sawa_         176 EEGDIILTGTPKGVGPVKENDEI  198 (217)
T ss_dssp             CTTCEEECCCCSCCEEECTTCEE
T ss_pred             CCCcEEEcCCCCCCccCCCCCEE
Confidence            99999999999999999999974

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-38  Score=228.69  Aligned_cols=103  Identities=37%  Similarity=0.591  Sum_probs=99.4

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      +|+||+|.+++..+.+|.++|+||+|||+|||+ +.+++.++.+++|+++|||+++|++++++|+|+++|+|+|+|+++|
T Consensus       103 ~T~Rd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~d~~~l~i~~~vNGe~~Q~~~t~~Mi~~~~elI~~lS~~~t  182 (221)
T d1nr9a_         103 LTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFT  182 (221)
T ss_dssp             CBCHHHHHHHHHHTCCSHHHHSSTTCEEECCBEEGGGCCSCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHTTTSC
T ss_pred             eeeehhhhhhhhcccccccCcccCCccccceeeeeeeccCCCcccEEEEEECCEEEEecccccccCCHHHHHHHHhCCCE
Confidence            699999999999999999999999999999997 7788889999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcccccCCCcc
Q psy9188          80 LEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      |+|||||+||||+|++++++||+.
T Consensus       183 L~pGDiI~TGTP~Gvg~l~~GD~v  206 (221)
T d1nr9a_         183 LKAGDVVLTGTPDGVGPLQSGDEL  206 (221)
T ss_dssp             BCTTCEEECCCCSCCEEECTTCEE
T ss_pred             ECCCCEEEcCCCCCCccCCCCCEE
Confidence            999999999999999999999974

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-36  Score=219.83  Aligned_cols=103  Identities=33%  Similarity=0.460  Sum_probs=94.8

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCC----CCCeeEEEEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKD----PDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS   75 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~----~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s   75 (104)
                      ||+||+|.+++.++.+|..+|+||+|||+|||+ +.+.+.+    ...++|+++|||+++|++++++|+|+++++|+|+|
T Consensus       121 ~s~Rd~q~~~~~~g~~~~~~K~~d~~~Pigp~i~~~~~~~~~~~~~~~l~i~~~vNGe~~Q~~~t~~mi~~~~elIa~lS  200 (257)
T d1nkqa_         121 LTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHIS  200 (257)
T ss_dssp             CEEHHHHHHHHHHTCCSHHHHHSTTCEEBCCCEEGGGGGGGTTCCTTTEEEEEEETTEEEEEEEGGGBSSCHHHHHHHHH
T ss_pred             cccccchhhhhccCCCcccccccccccCccceEehhhhCccccccccceEEEEEECCEEeeeeeeeccCCCHHHHHHHHh
Confidence            699999999999999999999999999999998 4443333    34579999999999999999999999999999999


Q ss_pred             cCCccCCCcEEEcCCCCCcccccCCCcc
Q psy9188          76 QHMTLEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        76 ~~~tL~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      ++++|+|||||+||||+|++++++||++
T Consensus       201 ~~~tL~pGDlI~TGTP~Gvg~l~~GD~v  228 (257)
T d1nkqa_         201 TMISLEPGDIILTGTPAGVGELKPGDRV  228 (257)
T ss_dssp             TTSCBCTTCEEECCCCSCCEEECTTCEE
T ss_pred             CCCCcCCCCEEEcCCCCCceeCCCCCEE
Confidence            9999999999999999999999999975

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-34  Score=207.14  Aligned_cols=95  Identities=22%  Similarity=0.290  Sum_probs=88.2

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL   80 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL   80 (104)
                      ||+||+|.     ..+|.++|+||+|||+|||+..+   ++.+++|+++|||+++|++++++|+|++++||+|+|+++||
T Consensus        95 ~T~rd~~~-----~~~~~~~K~~d~~~p~Gp~i~~~---~~~~l~i~~~vNGe~~Q~~~t~~mi~~~~~lI~~lS~~~tL  166 (213)
T d1gtta1          95 VSLPEESF-----YRPAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATL  166 (213)
T ss_dssp             CBSCCCCS-----SSCCHHHHCSTTCEEBCCCBCCS---CCTTCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred             cchHhhhh-----hhhccccccceecccceeeEeec---cceeEEEEEEeccccccccccccccCCHHHHHHHHhCCCCc
Confidence            68899874     57899999999999999998533   56789999999999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCcccccCCCcc
Q psy9188          81 EPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        81 ~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      +|||||+||||+|++++++||+.
T Consensus       167 ~pGDvI~TGTP~g~~~l~~GD~v  189 (213)
T d1gtta1         167 NPGDAILLGTPQARVEIQPGDRV  189 (213)
T ss_dssp             CTTCEEECCCCSCCCEECTTCEE
T ss_pred             CCCCEEEeCCcCCCccCCCCCEE
Confidence            99999999999999999999974

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=9.6e-33  Score=198.42  Aligned_cols=100  Identities=34%  Similarity=0.396  Sum_probs=94.2

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCc
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT   79 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~t   79 (104)
                      +|+||+|..   ...+|.++|+||+|+++|||+ +.++..|+.+++++++|||+++|++++++|+|+++++|+|+|++++
T Consensus        95 ~t~rd~~~~---~~~~~~~~k~~~~~~~~~p~~~~~d~~~d~~~l~i~~~vNg~~~Q~~~t~~Mi~~~~~li~~lS~~~t  171 (216)
T d1gtta2          95 YAIRDYLEN---YYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT  171 (216)
T ss_dssp             CEEGGGCCS---SSSSCHHHHSCTTCEEBCSCCEEGGGCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSC
T ss_pred             ccchhhhhc---ccccccccccccccccccccccchhhcCCcCceEEEEEECCEEEecCcHHHhccCHHHHHHHHhCCCC
Confidence            689999965   567889999999999999997 7778889999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEcCCCCCcccccCCCcc
Q psy9188          80 LEPYDLILTGKAGFILMFQQSPHS  103 (104)
Q Consensus        80 L~pGDvi~tGTp~g~~~~~~g~~~  103 (104)
                      |+|||||+||||+|++.+++||+.
T Consensus       172 L~pGDvI~TGTP~Gvg~l~~GD~v  195 (216)
T d1gtta2         172 LNPGDMIATGTPKGLSDVVPGDEV  195 (216)
T ss_dssp             BCTTCEEECCCCSCCCBCCTTCEE
T ss_pred             cCCCCEEEeCCCCCccCCCCCCEE
Confidence            999999999999999999999975

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.1e-29  Score=187.71  Aligned_cols=99  Identities=17%  Similarity=0.107  Sum_probs=82.8

Q ss_pred             CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCC----------------------CCCCeeEEEEE------C
Q psy9188           1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIK----------------------DPDDVPLWLKV------N   51 (104)
Q Consensus         1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~----------------------~~~~l~i~~~v------N   51 (104)
                      ||+||+|..++ ++.+|.++|+||  +|+|||+ +++++.                      +..++++++++      |
T Consensus       116 vSaRd~Q~~~~-~~~~~~~gK~f~--tpiGP~ivt~~~l~p~~~~~~~~dp~~~~~~~~~~~~~~dl~l~~~lng~~~~n  192 (298)
T d1hyoa2         116 WSARDIQQWEY-VPLGPFLGKSFG--TTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQ  192 (298)
T ss_dssp             CEEHHHHHHHC-TTTCCCHHHHTC--EEECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSS
T ss_pred             hhHHHHHHhhc-cCCCcccccCCC--CCCCCeEccchhcCcccccccccCccccccccccCCCCccceEEEEEEEEEeec
Confidence            79999999876 466889999997  5999997 655431                      22356666654      8


Q ss_pred             CEEEeecccCccCCCHHHHHHH-HHcCCccCCCcEEEcCCCCCcccccCCCc
Q psy9188          52 GELRQKSTTGDMLFKTGDLISY-ISQHMTLEPYDLILTGKAGFILMFQQSPH  102 (104)
Q Consensus        52 G~~~q~~~t~~m~~~~~~lia~-~s~~~tL~pGDvi~tGTp~g~~~~~~g~~  102 (104)
                      |+++|++++++|+|+++|+|+| +|+++||+|||||+||||+|++++++||.
T Consensus       193 g~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~Gd~  244 (298)
T d1hyoa2         193 AATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSM  244 (298)
T ss_dssp             CEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBH
T ss_pred             CeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCCcE
Confidence            8999999999999999999998 56899999999999999999999888874

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=7.1e-13  Score=94.71  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=69.7

Q ss_pred             cCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHc-----CCccCCCcEEEcCCCCCccc
Q psy9188          22 SFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLILTGKAGFILM   96 (104)
Q Consensus        22 ~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~-----~~tL~pGDvi~tGTp~g~~~   96 (104)
                      .+.+...+|+.++.....+..++.+++++||++++++++++++.+|.+.|+|+++     ..+|+|||+|+|||+.++.+
T Consensus       159 ~~~~~~v~g~~~~~~~~~d~~~~~v~l~~ng~~~~~g~~~~~~g~P~~al~wL~~~l~~~g~~L~~G~iV~TGs~~~~~~  238 (261)
T d1sv6a_         159 ASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVA  238 (261)
T ss_dssp             GGEEEEEECSCCBCSTTCCCSSCEEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCEE
T ss_pred             cCcccccccCcccchhhhccccccceEEEeceeEEecccccccCChHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCCEE
Confidence            3445567787764333348899999999999999999999999999999988764     68999999999999999999


Q ss_pred             ccCCCcc
Q psy9188          97 FQQSPHS  103 (104)
Q Consensus        97 ~~~g~~~  103 (104)
                      +++||++
T Consensus       239 i~~Gd~v  245 (261)
T d1sv6a_         239 VNAGDRF  245 (261)
T ss_dssp             CCTTCEE
T ss_pred             CCCCCEE
Confidence            9999976