Psyllid ID: psy9204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MSFFFLYFTEGSSNFDHAWDGNYDITKISLALYSEGSSNFDHAWDGNYDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL
Secondary Structure (PSIPRED)
ccEEEEEEccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcEEEEEccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccccccccEEEEEEEEcccccccccccccccccccHHEHEHHHHHHHHccHHHHHccHHHcccccccccEEEEEEEEEccEEEEEEEEEEcccEEEccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSFFFLYFtegssnfdhawdgnydiTKISLALYsegssnfdhawdgnydiTKISLALYSGLFAFGGWNYLNFVVdelqdpynlvlpvtgqrlvrLEGVSIIVGCIIgsgifvspagvlaetQSVGLSIVIWTVCGLLSTIGALCYAELGtcisrsggdYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQyaikpffpdselpDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL
Flexible Loop (DISEMBL)
MSFFFLYFTEGssnfdhawdgNYDITKISLALYSEGSSNFDHAWDGNYDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL
Low Complexity Region (SEG)
MSFFFLYFTEGSSNFDHAWDGNYDITKISLALYSEGSSNFDHAWDGNYDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEgvsiivgciigsgifvsPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRavlllaaaclcvltavncMSVSWAMQVQTLFTVGKlvalfgiiaagigylgigl
Disordered region (IsUnstruct)
**FFFLYFTEGSSNFDHAWDGNYDITKISLALYSEGSSNFDHAWDGNYDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGI**
Disordered Region (DISOPRED)
MSFFFLYFTEGSSNFD************************DHAWDGNYDITKISLALYSGLFAFGGWNYLNFVV**************GQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL
Disordered Region (DISEMBL)
MSFFFLYFTEGSSNFDHAWDGNYDITKISLALYSEGSSNFDHAWDGNYDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL
Disordered Region (DISPRO)
MSFFFLYFTEGSSNFDHAWDGNYDITKISLALYSEGSSNFDHAWDGNYDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFFFLYFTEGSSNFDHAWDGNYDITKISLALYSEGSSNFDHAWDGNYDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q8BGK6	515	Y+L amino acid transporte	yes	N/A	0.656	0.337	0.571	2e-48
Q92536	515	Y+L amino acid transporte	yes	N/A	0.656	0.337	0.56	3e-48
Q28I80	514	Y+L amino acid transporte	yes	N/A	0.652	0.336	0.542	5e-48
Q9UM01	511	Y+L amino acid transporte	no	N/A	0.656	0.340	0.571	7e-48
Q9Z1K8	510	Y+L amino acid transporte	no	N/A	0.656	0.341	0.56	2e-47
Q9R0S5	512	Y+L amino acid transporte	no	N/A	0.656	0.339	0.56	3e-47
A1L3M3	510	Y+L amino acid transporte	N/A	N/A	0.652	0.339	0.537	7e-47
Q59I64	468	Y+L amino acid transporte	no	N/A	0.633	0.358	0.550	3e-46
Q9Z127	512	Large neutral amino acids	no	N/A	0.577	0.298	0.616	9e-44
Q63016	512	Large neutral amino acids	no	N/A	0.577	0.298	0.616	1e-43

>sp|Q8BGK6|YLAT2_MOUSE Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 125/175 (71%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GVS++VG +IGSGIFVSP GVL  T S GLS+++W + GL S +GALCYAELG
Sbjct: 43  KEISLLNGVSLVVGNMIGSGIFVSPKGVLKYTASYGLSLIVWAIGGLFSVVGALCYAELG 102

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I++SG  YAYIL AFG   AF+RLWV+LLI+ PT+QAI+A+TFA Y IKP FP  + P
Sbjct: 103 TTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYIIKPSFPTCDPP 162

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             A  LLAAAC+C+LT VNC  V W  +VQ  FT  K++AL  II  G+  L  G
Sbjct: 163 YVACRLLAAACVCLLTFVNCAYVKWGTRVQDTFTYAKVLALIAIIIMGLVKLCQG 217

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial cells.
Mus musculus (taxid: 10090)

>sp|Q92536|YLAT2_HUMAN Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 124/175 (70%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GVS++VG +IGSGIFVSP GVL  T S G+S+++W + GL S +GALCYAELG
Sbjct: 43  KEISLLNGVSLVVGNMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELG 102

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I++SG  YAYIL AFG   AF+RLWV+LL++ PT QAI+A+TFA Y I+P FP  + P
Sbjct: 103 TTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPP 162

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             A  LLAAAC+C+LT VNC  V W  +VQ  FT  K+VAL  II  G+  L  G
Sbjct: 163 YLACRLLAAACICLLTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQG 217

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial (RPE) cells.

Homo sapiens (taxid: 9606)

>sp|Q28I80|YLAT2_XENTR Y+L amino acid transporter 2 OS=Xenopus tropicalis GN=slc7a6 PE=2 SV=1

 Score =  191 bits (485), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 125/175 (71%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GVS+IVG +IGSGIFVSP GVL  + S GLS+++W++ G+ S IGALCYAELG
Sbjct: 38  KEISLLNGVSLIVGNMIGSGIFVSPKGVLIYSASYGLSLILWSLGGIFSVIGALCYAELG 97

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I +SG  YAYIL AFG+  AF+RLW +LLI+ PT+QA++A+TFA Y ++P FP    P
Sbjct: 98  TTIKKSGASYAYILEAFGDFVAFIRLWTSLLIIEPTSQAVIAITFANYLVQPVFPSCYPP 157

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             A  L+AAAC+C++T +NC  V W  +VQ LFT  K++AL  II  GI  L  G
Sbjct: 158 YMASRLIAAACVCLITFINCAYVKWGTRVQDLFTYAKVIALIAIIITGIVKLSQG 212

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus tropicalis (taxid: 8364)

>sp|Q9UM01|YLAT1_HUMAN Y+L amino acid transporter 1 OS=Homo sapiens GN=SLC7A7 PE=1 SV=2

 Score =  191 bits (484), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 122/175 (69%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GV +IVG +IGSGIFVSP GVL  + S GLS+VIW V GL S  GALCYAELG
Sbjct: 35  KEISLLNGVCLIVGNMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGALCYAELG 94

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I +SG  YAYIL AFG   AF+RLW +LLI+ PT+QAI+A+TFA Y ++P FP    P
Sbjct: 95  TTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAP 154

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             A  LLAAAC+C+LT +NC  V W   VQ +FT  K++AL  +I AGI  LG G
Sbjct: 155 YAASRLLAAACICLLTFINCAYVKWGTLVQDIFTYAKVLALIAVIVAGIVRLGQG 209

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes.

Homo sapiens (taxid: 9606)

>sp|Q9Z1K8|YLAT1_MOUSE Y+L amino acid transporter 1 OS=Mus musculus GN=Slc7a7 PE=1 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 122/175 (69%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GV +IVG +IGSGIFVSP GVL  + S GLS+VIW V G+ S  GALCYAELG
Sbjct: 36  KEISLLNGVCLIVGNMIGSGIFVSPKGVLMYSASFGLSLVIWAVGGIFSVFGALCYAELG 95

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I +SG  YAYIL AFG   AF+RLW +LLI+ PT+QA++A+TFA Y ++P FP    P
Sbjct: 96  TTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAP 155

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             A  LLAAAC+C+LT +NC  V W   VQ +FT  K++AL  +I AGI  LG G
Sbjct: 156 YAAGRLLAAACICLLTFINCAYVKWGTLVQDIFTYAKVLALIAVIIAGIVRLGQG 210

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Mus musculus (taxid: 10090)

>sp|Q9R0S5|YLAT1_RAT Y+L amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a7 PE=2 SV=1

 Score =  188 bits (478), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 122/175 (69%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GV +IVG +IGSGIFVSP GVL  + S GLS+VIW V G+ S  GALCYAELG
Sbjct: 38  KEISLLNGVCLIVGNMIGSGIFVSPKGVLMYSASFGLSLVIWAVGGIFSVFGALCYAELG 97

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I +SG  YAYIL AFG   AF+RLW +LLI+ PT+QA++A+TFA Y ++P FP    P
Sbjct: 98  TTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAP 157

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             A  LLAAAC+C+LT +NC  V W   VQ +FT  K++AL  +I AGI  LG G
Sbjct: 158 YAAGRLLAAACICLLTFINCAYVKWGTLVQDIFTYAKVLALIAVIIAGIVRLGQG 212

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Rattus norvegicus (taxid: 10116)

>sp|A1L3M3|YLAT2_XENLA Y+L amino acid transporter 2 OS=Xenopus laevis GN=slc7a6 PE=2 SV=1

 Score =  187 bits (475), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 122/175 (69%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GVS+IVG +IGSGIFVSP GVL  + S GLS+++W + G+ S IGA CYAELG
Sbjct: 38  KEISLLNGVSLIVGNMIGSGIFVSPKGVLIYSASYGLSLILWALGGIFSVIGAPCYAELG 97

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I +SG  YAYIL AFG   AF+RLW +LLI+ PT+QA++A+TFA Y ++P FP    P
Sbjct: 98  TTIKKSGASYAYILEAFGGFVAFIRLWTSLLIIEPTSQAVIAITFANYLVQPVFPSCNPP 157

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             A  L+AAAC+C++T +NC  V W  +VQ LFT  K++AL  II  GI  L  G
Sbjct: 158 YMASRLIAAACVCLITFINCAYVKWGTRVQDLFTYAKVIALIAIIITGIVKLSQG 212

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus laevis (taxid: 8355)

>sp|Q59I64|YLAT2_DANRE Y+L amino acid transporter 2 OS=Danio rerio GN=slc7a6 PE=2 SV=1

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 122/169 (72%)

Query: 90  QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELG 149
           + +  L GVS+IVG +IGSGIFVSP GVL  + S GLS+VIW + G+ S +GALCYAELG
Sbjct: 5   KEISLLNGVSLIVGNMIGSGIFVSPKGVLIYSASYGLSLVIWAIGGIFSVVGALCYAELG 64

Query: 150 TCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELP 209
           T I++SG  YAYIL +FG   AF+RLW +LLI+ PT+QA++A+TFA Y ++P FP  E P
Sbjct: 65  TTITKSGASYAYILESFGGFIAFIRLWTSLLIIEPTSQAVIAITFANYLVQPLFPTCEPP 124

Query: 210 DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGI 258
             A  L+AAAC+C+LT +N   V W  +VQ +FT  K++AL  II  GI
Sbjct: 125 YSASRLIAAACICLLTFINSAYVKWGTRVQDVFTYAKVLALIVIIITGI 173

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Danio rerio (taxid: 7955)

>sp|Q9Z127|LAT1_MOUSE Large neutral amino acids transporter small subunit 1 OS=Mus musculus GN=Slc7a5 PE=1 SV=2

 Score =  177 bits (448), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 95/154 (61%), Positives = 117/154 (75%), Gaps = 1/154 (0%)

Query: 87  VTGQR-LVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 145
           VT QR +  L GV+IIVG IIGSGIFV+P GVL E  S GLS+V+W VCG+ S +GALCY
Sbjct: 45  VTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCY 104

Query: 146 AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 205
           AELGT IS+SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA Y +KP FP 
Sbjct: 105 AELGTTISKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFATYLLKPVFPT 164

Query: 206 SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQ 239
             +P+ A  L+A  C+ +LTAVNC SV  A +VQ
Sbjct: 165 CPVPEEAAKLVACLCVLLLTAVNCYSVKAATRVQ 198

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Mus musculus (taxid: 10090)

>sp|Q63016|LAT1_RAT Large neutral amino acids transporter small subunit 1 OS=Rattus norvegicus GN=Slc7a5 PE=1 SV=2

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/154 (61%), Positives = 117/154 (75%), Gaps = 1/154 (0%)

Query: 87  VTGQRLVRL-EGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 145
           VT QR + L  GV+IIVG IIGSGIFV+P GVL E  S GLS+V+W VCG+ S +GALCY
Sbjct: 45  VTLQRNITLINGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCY 104

Query: 146 AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 205
           AELGT IS+SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA Y +KP FP 
Sbjct: 105 AELGTTISKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFATYLLKPVFPT 164

Query: 206 SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQ 239
             +P+ A  L+A  C+ +LTAVNC SV  A +VQ
Sbjct: 165 CPVPEEAAKLVACLCVLLLTAVNCYSVKAATRVQ 198

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
347972270	247	AGAP013073-PA [Anopheles gambiae str. PE	0.660	0.708	0.674	2e-61
195472295	498	GE12468 [Drosophila yakuba] gi|194174537	0.671	0.357	0.651	1e-59
194861394	498	GG10278 [Drosophila erecta] gi|190661641	0.671	0.357	0.651	2e-59
195350981	500	GM26373 [Drosophila sechellia] gi|194123	0.671	0.356	0.646	3e-59
19921172	500	JhI-21, isoform A [Drosophila melanogast	0.671	0.356	0.640	7e-59
125986780	496	GA11552 [Drosophila pseudoobscura pseudo	0.671	0.358	0.662	1e-58
195578661	498	GD22136 [Drosophila simulans] gi|1941911	0.671	0.357	0.646	1e-58
194766009	502	GF23476 [Drosophila ananassae] gi|190617	0.743	0.392	0.575	2e-58
157103462	507	cationic amino acid transporter [Aedes a	0.584	0.305	0.709	4e-57
170029052	512	cationic amino acid transporter [Culex q	0.584	0.302	0.709	5e-57

>gi|347972270|ref|XP_003436870.1| AGAP013073-PA [Anopheles gambiae str. PEST] gi|347972272|ref|XP_003436871.1| AGAP013073-PB [Anopheles gambiae str. PEST] gi|333469328|gb|EGK97252.1| AGAP013073-PA [Anopheles gambiae str. PEST] gi|333469329|gb|EGK97253.1| AGAP013073-PB [Anopheles gambiae str. PEST]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 143/175 (81%)

Query: 87  VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
           V  +++  + GV IIVG IIGSGIF+SP GV   T+SVG S+VIWT+ G+LST+GALCYA
Sbjct: 27  VLKRKITLINGVGIIVGTIIGSGIFISPTGVFVFTRSVGSSLVIWTLSGILSTLGALCYA 86

Query: 147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
           ELGTCI+RSGGDYAY+LVAFG L  FLRLW+ALLI+RPTTQAIVALTFAQYA++PFF D 
Sbjct: 87  ELGTCITRSGGDYAYLLVAFGPLVGFLRLWMALLIIRPTTQAIVALTFAQYAVRPFFEDC 146

Query: 207 ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261
           E P+ AV LLAA CLC LTA+NC+S  WAM++Q +FT+ KL AL  II AGI ++
Sbjct: 147 EAPESAVRLLAAVCLCFLTAINCISTKWAMKIQDVFTIAKLTALVSIILAGIYFM 201

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472295|ref|XP_002088436.1| GE12468 [Drosophila yakuba] gi|194174537|gb|EDW88148.1| GE12468 [Drosophila yakuba]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 143/178 (80%)

Query: 87  VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
           V  ++L  + GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALCYA
Sbjct: 34  VLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFLYTESVGSSLLIWLTCGILSTIGALCYA 93

Query: 147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
           ELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVALTFA YA+KPFFP+ 
Sbjct: 94  ELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALTFAHYAVKPFFPEC 153

Query: 207 ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
           + P  AV LLAA CL +LT +NC+SV  +M+VQ +FTVGKL+AL  II AG+ Y+  G
Sbjct: 154 DPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALIMIILAGLYYMATG 211

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194861394|ref|XP_001969774.1| GG10278 [Drosophila erecta] gi|190661641|gb|EDV58833.1| GG10278 [Drosophila erecta]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 143/178 (80%)

Query: 87  VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
           V  ++L  + GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALCYA
Sbjct: 34  VLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFFYTESVGSSLLIWLTCGILSTIGALCYA 93

Query: 147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
           ELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVALTFA YA+KPFFP+ 
Sbjct: 94  ELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALTFAHYAVKPFFPEC 153

Query: 207 ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
           + P  AV LLAA CL +LT +NC+SV  +M+VQ +FTVGKL+AL  II AG+ Y+  G
Sbjct: 154 DPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALIMIILAGLYYMATG 211

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350981|ref|XP_002042015.1| GM26373 [Drosophila sechellia] gi|194123839|gb|EDW45882.1| GM26373 [Drosophila sechellia]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/178 (64%), Positives = 143/178 (80%)

Query: 87  VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
           V  ++L  L GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALCYA
Sbjct: 36  VLKRKLTLLNGVAIIVGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALCYA 95

Query: 147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
           ELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVAL+FA YA+KPFFP+ 
Sbjct: 96  ELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKPFFPEC 155

Query: 207 ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
           + P  AV LLAA CL +LT +NC+SV  +M+VQ +FTVGKL+AL  II +G+ Y+  G
Sbjct: 156 DPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALIMIILSGLYYMATG 213

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921172|ref|NP_609542.1| JhI-21, isoform A [Drosophila melanogaster] gi|45550968|ref|NP_723717.2| JhI-21, isoform B [Drosophila melanogaster] gi|386769516|ref|NP_001245996.1| JhI-21, isoform C [Drosophila melanogaster] gi|14279692|gb|AAK58692.1|AF273478_1 amino acid transporter protein JHI-21 [Drosophila melanogaster] gi|7297908|gb|AAF53154.1| JhI-21, isoform A [Drosophila melanogaster] gi|15292125|gb|AAK93331.1| LD39658p [Drosophila melanogaster] gi|45445095|gb|AAN10800.2| JhI-21, isoform B [Drosophila melanogaster] gi|220946166|gb|ACL85626.1| JhI-21-PA [synthetic construct] gi|383291454|gb|AFH03670.1| JhI-21, isoform C [Drosophila melanogaster]

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 143/178 (80%)

Query: 87  VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
           V  ++L  + GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALCYA
Sbjct: 36  VLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALCYA 95

Query: 147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
           ELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVAL+FA YA+KPFFP+ 
Sbjct: 96  ELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKPFFPEC 155

Query: 207 ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
           + P  AV LLAA CL +LT +NC+SV  +M+VQ +FTVGKL+AL  II +G+ Y+  G
Sbjct: 156 DPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALIMIILSGLYYMATG 213

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125986780|ref|XP_001357153.1| GA11552 [Drosophila pseudoobscura pseudoobscura] gi|195160016|ref|XP_002020872.1| GL14136 [Drosophila persimilis] gi|54645481|gb|EAL34220.1| GA11552 [Drosophila pseudoobscura pseudoobscura] gi|194117822|gb|EDW39865.1| GL14136 [Drosophila persimilis]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/178 (66%), Positives = 141/178 (79%)

Query: 87  VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
           V  ++L  L GV+IIVG IIGSGIF++P GV   T+SVG S++IW+ CG+LSTIGALCYA
Sbjct: 32  VLKRKLTLLNGVAIIVGTIIGSGIFIAPTGVFLYTESVGTSLLIWSACGILSTIGALCYA 91

Query: 147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
           ELGT I RSGGDYAY+LV FG L  FLRLW+ALLI+RPTTQ IVALTFA YA KPFF D 
Sbjct: 92  ELGTSIMRSGGDYAYLLVCFGPLVGFLRLWIALLIIRPTTQTIVALTFAHYAAKPFFEDC 151

Query: 207 ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
           + P  +V LLAA CL +LTA+NC+SV  +M+VQ +FTVGKL+AL  II AGI Y+ IG
Sbjct: 152 DPPQNSVKLLAAVCLTLLTAINCLSVKVSMKVQDVFTVGKLLALIMIIIAGIYYMAIG 209

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195578661|ref|XP_002079182.1| GD22136 [Drosophila simulans] gi|194191191|gb|EDX04767.1| GD22136 [Drosophila simulans]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/178 (64%), Positives = 141/178 (79%)

Query: 87  VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
           V  ++L  L GV+IIVG IIGSGIF++P GV     SVGLS++IW  CG+LSTIGALCYA
Sbjct: 34  VLKRKLTLLNGVAIIVGTIIGSGIFIAPTGVFKYADSVGLSLLIWLACGILSTIGALCYA 93

Query: 147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
           ELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVAL+FA YA+KPFFP+ 
Sbjct: 94  ELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKPFFPEC 153

Query: 207 ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             P  AV LLAA CL +LT +NC+SV  +M+VQ +FTVGKL+AL  II +G+ Y+  G
Sbjct: 154 VPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALIMIILSGLYYMATG 211

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766009|ref|XP_001965117.1| GF23476 [Drosophila ananassae] gi|190617727|gb|EDV33251.1| GF23476 [Drosophila ananassae]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 151/212 (71%), Gaps = 15/212 (7%)

Query: 68  NYLNFVVDELQDPYNLVLPVTG---------------QRLVRLEGVSIIVGCIIGSGIFV 112
            Y N V   L +P N   P T                ++L  + GV+IIVG IIGSGIF+
Sbjct: 4   RYANGVTTSLVEPENGRTPSTNGSKEPSQGEDKMVLKRKLTLINGVAIIVGTIIGSGIFI 63

Query: 113 SPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF 172
           +P GV   T+SVG S++IW+ CG+LSTIGALCYAELGT I+RSGGDYAY+LV+FG L  F
Sbjct: 64  APTGVFRYTESVGSSLLIWSACGILSTIGALCYAELGTSITRSGGDYAYLLVSFGPLVGF 123

Query: 173 LRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSV 232
           LRLW+ALLI+RPTTQ IVALTFA YA+KPFF D + P  AV LLAA CL +LTA+NC+SV
Sbjct: 124 LRLWIALLIIRPTTQTIVALTFAHYAVKPFFEDCDPPPDAVKLLAAVCLTLLTAINCLSV 183

Query: 233 SWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
             +M+VQ +FT+GKL+AL  II AG+ Y+  G
Sbjct: 184 KVSMKVQDVFTIGKLLALIMIILAGLFYIVTG 215

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103462|ref|XP_001647992.1| cationic amino acid transporter [Aedes aegypti] gi|108880523|gb|EAT44748.1| AAEL003919-PA [Aedes aegypti]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 130/155 (83%)

Query: 108 SGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 167
           SGIFVSPAGV   T+SVG S+VIW + G+LST+GALCYAELGTCI+RSGGDYAY+LVAFG
Sbjct: 43  SGIFVSPAGVFLYTKSVGSSLVIWCLSGILSTLGALCYAELGTCITRSGGDYAYLLVAFG 102

Query: 168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAV 227
            L  FLRLW+ALLI+RPTTQAIVALTFAQYA+KPFFP+ + PD +V LLAA CLC LTA+
Sbjct: 103 PLVGFLRLWMALLIIRPTTQAIVALTFAQYAVKPFFPECDAPDNSVRLLAAVCLCFLTAI 162

Query: 228 NCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLG 262
           NC+S  WAM++Q +FT+ KL AL  II AG+ YL 
Sbjct: 163 NCISTKWAMKIQNVFTMAKLTALISIILAGVWYLA 197

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029052|ref|XP_001842408.1| cationic amino acid transporter [Culex quinquefasciatus] gi|167879458|gb|EDS42841.1| cationic amino acid transporter [Culex quinquefasciatus]

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 130/155 (83%)

Query: 108 SGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG 167
           SGIFVSPAGV   T+SVG S+VIWT+ G+LST+GALCYAELGTCI+RSGGDYAY+LVAFG
Sbjct: 49  SGIFVSPAGVFLYTKSVGSSLVIWTLSGILSTLGALCYAELGTCITRSGGDYAYLLVAFG 108

Query: 168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAV 227
            L  FLRLW+ALLI+RPTTQAIVALTFAQYA+KPFFP+ + PD A  LLAA CLC LTA+
Sbjct: 109 PLVGFLRLWMALLIIRPTTQAIVALTFAQYAVKPFFPECDPPDNAARLLAAVCLCFLTAI 168

Query: 228 NCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLG 262
           NC+S  WAM++Q +FT+ KL AL  II AG+ +L 
Sbjct: 169 NCISTKWAMKIQDVFTLAKLTALISIILAGVWFLS 203

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
FB|FBgn0028425	500	JhI-21 "JhI-21" [Drosophila me	0.501	0.266	0.593	6.1e-39
UNIPROTKB|E1C734	499	SLC7A11 "Uncharacterized prote	0.501	0.266	0.473	1.1e-32
MGI|MGI:1298205	512	Slc7a5 "solute carrier family	0.501	0.259	0.511	1.2e-31
RGD|620639	512	Slc7a5 "solute carrier family	0.501	0.259	0.511	1.2e-31
UNIPROTKB|F1N9G9	526	LOC100859242 "Uncharacterized	0.501	0.252	0.511	1.2e-31
UNIPROTKB|F1NEI2	528	LOC100859242 "Uncharacterized	0.501	0.251	0.511	1.2e-31
UNIPROTKB|F1PH98	516	SLC7A5 "Uncharacterized protei	0.603	0.310	0.443	1.3e-31
UNIPROTKB|I3LUX3	249	LOC100623148 "Uncharacterized	0.501	0.534	0.496	1.6e-31
UNIPROTKB|Q7YQK4	503	SLC7A5 "Large neutral amino ac	0.501	0.264	0.503	2.1e-31
UNIPROTKB|F1PEX1	503	SLC7A11 "Uncharacterized prote	0.501	0.264	0.496	2.1e-31

FB|FBgn0028425 JhI-21 "JhI-21" [Drosophila melanogaster (taxid:7227)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 79/133 (59%), Positives = 96/133 (72%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GV   T+SVG S++IW  CG+LSTIGALCYAELGTCI+RSGGDYAY+LV+FG L  FL
Sbjct:    63 PTGVFIYTESVGSSLLIWLTCGILSTIGALCYAELGTCITRSGGDYAYLLVSFGPLVGFL 122

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             RLW+ALLI+RPTTQ IVAL+FA YA+KPFFP+ + P                    +SV 
Sbjct:   123 RLWIALLIIRPTTQTIVALSFAHYAVKPFFPECDPPQNAVKLLAAICLTLLTTINCLSVK 182

Query:   234 WAMQVQTLFTVGK 246
              +M+VQ +FTVGK
Sbjct:   183 VSMKVQDVFTVGK 195

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=NAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

UNIPROTKB|E1C734 SLC7A11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/133 (47%), Positives = 85/133 (63%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P G+L  T SVG+S+++WT CG+LS  GALCYAELGTCI +SGG Y YIL AFG LPAF+
Sbjct:    64 PKGILKNTGSVGMSLIVWTACGILSLFGALCYAELGTCIKKSGGHYTYILEAFGPLPAFV 123

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             R+WV LL++RP   A+++L F +Y ++PFF   E+P+                    SVS
Sbjct:   124 RVWVELLVIRPAATAVISLAFGRYILEPFFMQCEIPELAIKLITAVGITLVMVLNSTSVS 183

Query:   234 WAMQVQTLFTVGK 246
             W+ ++Q   T  K
Sbjct:   184 WSARIQIFLTFCK 196

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0070527 "platelet aggregation" evidence=IEA

MGI|MGI:1298205 Slc7a5 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 5" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 68/133 (51%), Positives = 84/133 (63%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GVL E  S GLS+V+W VCG+ S +GALCYAELGT IS+SGGDYAY+L  +G LPAFL
Sbjct:    73 PTGVLKEAGSPGLSLVVWAVCGVFSIVGALCYAELGTTISKSGGDYAYMLEVYGSLPAFL 132

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             +LW+ LLI+RP++Q IVAL FA Y +KP FP   +P+                    SV 
Sbjct:   133 KLWIELLIIRPSSQYIVALVFATYLLKPVFPTCPVPEEAAKLVACLCVLLLTAVNCYSVK 192

Query:   234 WAMQVQTLFTVGK 246
              A +VQ  F   K
Sbjct:   193 AATRVQDAFAAAK 205

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IDA

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

RGD|620639 Slc7a5 "solute carrier family 7 (amino acid transporter light chain, L system), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 68/133 (51%), Positives = 84/133 (63%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GVL E  S GLS+V+W VCG+ S +GALCYAELGT IS+SGGDYAY+L  +G LPAFL
Sbjct:    73 PTGVLKEAGSPGLSLVVWAVCGVFSIVGALCYAELGTTISKSGGDYAYMLEVYGSLPAFL 132

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             +LW+ LLI+RP++Q IVAL FA Y +KP FP   +P+                    SV 
Sbjct:   133 KLWIELLIIRPSSQYIVALVFATYLLKPVFPTCPVPEEAAKLVACLCVLLLTAVNCYSVK 192

Query:   234 WAMQVQTLFTVGK 246
              A +VQ  F   K
Sbjct:   193 AATRVQDAFAAAK 205

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005829 "cytosol" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA;ISO

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0015807 "L-amino acid transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0042605 "peptide antigen binding" evidence=ISS

UNIPROTKB|F1N9G9 LOC100859242 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 349 (127.9 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 68/133 (51%), Positives = 83/133 (62%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GVL E  S GLS+V+W VCG  S +GALCYAELGT I++SGGDYAY+L  +G LPAFL
Sbjct:    91 PTGVLREAGSPGLSLVVWAVCGAFSIVGALCYAELGTTITKSGGDYAYMLEVYGSLPAFL 150

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             +LW+ LLI+RP++Q IVAL FA Y +KP FP   +PD                    SV 
Sbjct:   151 KLWIELLIIRPSSQYIVALVFATYLLKPIFPSCPVPDEAAKLVACLCVLLLTAVNCYSVK 210

Query:   234 WAMQVQTLFTVGK 246
              A +VQ  F   K
Sbjct:   211 AATRVQDAFAAAK 223

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NEI2 LOC100859242 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 349 (127.9 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 68/133 (51%), Positives = 83/133 (62%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GVL E  S GLS+V+W VCG  S +GALCYAELGT I++SGGDYAY+L  +G LPAFL
Sbjct:    91 PTGVLREAGSPGLSLVVWAVCGAFSIVGALCYAELGTTITKSGGDYAYMLEVYGSLPAFL 150

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             +LW+ LLI+RP++Q IVAL FA Y +KP FP   +PD                    SV 
Sbjct:   151 KLWIELLIIRPSSQYIVALVFATYLLKPIFPSCPVPDEAAKLVACLCVLLLTAVNCYSVK 210

Query:   234 WAMQVQTLFTVGK 246
              A +VQ  F   K
Sbjct:   211 AATRVQDAFAAAK 223

GO:0016021 "integral to membrane" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PH98 SLC7A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 71/160 (44%), Positives = 90/160 (56%)

Query:    87 VTGQRLVRLEXXXXXXXXXXXXXXXXXPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 146
             VT QR + L                  P GVL E  S GL++V+W VCG+ S +GALCYA
Sbjct:    52 VTLQRSITLSGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLALVVWAVCGVFSIVGALCYA 111

Query:   147 ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 206
             ELGT I++SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA Y +KP FP  
Sbjct:   112 ELGTTITKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFATYLLKPLFPTC 171

Query:   207 ELPDRXXXXXXXXXXXXXXXXXXMSVSWAMQVQTLFTVGK 246
              +P+                    SV  A +VQ  F   K
Sbjct:   172 PVPESAAKLVACLCVLLLTAVNCYSVKAATRVQDAFAAAK 211

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|I3LUX3 LOC100623148 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 66/133 (49%), Positives = 84/133 (63%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GVL  T SVGLS+V+WTVCG+LS  GAL YAELGT I +SGG Y YIL  FG LPAF+
Sbjct:    66 PKGVLQNTGSVGLSLVVWTVCGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLPAFV 125

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             R+WV LLI+RP   A+++L F +Y ++PFF   E+P+                   MSVS
Sbjct:   126 RVWVELLIIRPAATAVISLAFGRYILEPFFIQCEIPELAIKLITAVGITVVMVLNSMSVS 185

Query:   234 WAMQVQTLFTVGK 246
             W+ ++Q   T  K
Sbjct:   186 WSARIQIFLTFCK 198

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q7YQK4 SLC7A5 "Large neutral amino acids transporter small subunit 1" [Oryctolagus cuniculus (taxid:9986)]

 Score = 345 (126.5 bits), Expect = 2.1e-31, P = 2.1e-31
 Identities = 67/133 (50%), Positives = 84/133 (63%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GVL E  S GLS+V+W VCG+ S +GALCYAELGT I++SGGDYAY+L  +G LPAFL
Sbjct:    68 PTGVLKEAGSPGLSLVVWAVCGVFSIVGALCYAELGTTITKSGGDYAYMLEVYGSLPAFL 127

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             +LW+ LLI+RP++Q IVAL FA Y +KP FP   +P+                    SV 
Sbjct:   128 KLWIELLIIRPSSQYIVALVFATYLLKPVFPTCPVPEEAAKLVACLCVLLLTAVNCYSVK 187

Query:   234 WAMQVQTLFTVGK 246
              A +VQ  F   K
Sbjct:   188 AATRVQDAFAAAK 200

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0042605 "peptide antigen binding" evidence=IPI

UNIPROTKB|F1PEX1 SLC7A11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 2.1e-31, P = 2.1e-31
 Identities = 66/133 (49%), Positives = 84/133 (63%)

Query:   114 PAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFL 173
             P GVL  T SVG+S+VIWTVCG+LS  GAL YAELGT I +SGG Y YIL  FG LPAF+
Sbjct:    66 PKGVLQNTGSVGMSLVIWTVCGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLPAFV 125

Query:   174 RLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRXXXXXXXXXXXXXXXXXXMSVS 233
             R+WV LLI+RP   A+++L F +Y ++PFF   E+P+                   MSVS
Sbjct:   126 RVWVELLIIRPAATAVISLAFGRYILEPFFIQCEIPELAIKLITAVGITVVMVLNSMSVS 185

Query:   234 WAMQVQTLFTVGK 246
             W+ ++Q   T  K
Sbjct:   186 WSARIQIFLTFCK 198

GO:0070527 "platelet aggregation" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92536	YLAT2_HUMAN	No assigned EC number	0.56	0.6566	0.3378	yes	N/A
Q28I80	YLAT2_XENTR	No assigned EC number	0.5428	0.6528	0.3365	yes	N/A
Q8BGK6	YLAT2_MOUSE	No assigned EC number	0.5714	0.6566	0.3378	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	6e-67
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	5e-14
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	3e-13
PRK11357	445	PRK11357, frlA, putative fructoselysine transporte	2e-11
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	3e-10
TIGR00905	473	TIGR00905, 2A0302, transporter, basic amino acid/p	2e-09
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	1e-08
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	2e-07
PRK10644	445	PRK10644, PRK10644, arginine:agmatin antiporter; P	2e-04
COG1113	462	COG1113, AnsP, Gamma-aminobutyrate permease and re	3e-04

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  215 bits (549), Expect = 6e-67
 Identities = 100/179 (55%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 87  VTGQRLVR-LEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 145
           V  ++ +  L GV IIVG IIGSGIFVSP GVL    SVGL++++W VCG+ S +GAL Y
Sbjct: 38  VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVY 97

Query: 146 AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 205
           AELGT I +SGG+Y YIL  FG L AFLRLW+ LL++RP +QA+ AL FA Y + P FPD
Sbjct: 98  AELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD 157

Query: 206 SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIG 264
            E+P+ A+ L+A  C+ +LT VNC+SV WA +VQ +FT  KL+AL  II  G   LG G
Sbjct: 158 CEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKG 216

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 5/166 (3%)

Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDY 159
           +++G IIGSGIFV+P   L  +      +  W    + S   AL YAEL +   R+GG Y
Sbjct: 9   LVIGSIIGSGIFVTP---LIASAGAAAILWGWIAALIFSLAVALVYAELSSAFPRNGGIY 65

Query: 160 AYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAA 219
            ++  AFG+  AF+  W   L       +  ++  AQY +  FFPD          +A A
Sbjct: 66  VWLKNAFGKPVAFIAAWFNWLAYILGLASSSSV-AAQYLLSAFFPDLVGNTWLTYGIAIA 124

Query: 220 CLCVLTAVNCMSVSWAMQVQT-LFTVGKLVALFGIIAAGIGYLGIG 264
            L +   +N   +  + ++Q  L  V  L+ L  II  G+     G
Sbjct: 125 ILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGG 170

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 98  VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
            ++ VG +IGSGIF  P            +I+ W + G++    AL YAEL + I  +GG
Sbjct: 21  TALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSYAELSSAIPSAGG 77

Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY--AIKPFFPDSELPDRAVLL 215
            YAY   A G    FL  W+ LL       A +A+  A Y   + P      +    ++L
Sbjct: 78  AYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSYLFPGPGLLSIGPLLIIL 136

Query: 216 LAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL 265
           +A A + +LT +N   +  + ++ ++ T+ K++ L   I  G+   G   
Sbjct: 137 IALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN 186

Length = 466

>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 4/164 (2%)

Query: 98  VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
           ++I VG  +GSGIFVS   V     +  L+++ + + GL+       YAEL T    +G 
Sbjct: 16  LAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA 75

Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLA 217
           DY Y+  A     AFL  W +       + +I+AL      +    P   L       +A
Sbjct: 76  DYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSN-LGFLTPIDPL---LGKFIA 131

Query: 218 AACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261
           A  +     ++  SV      QTL T+ K++    +I  GI + 
Sbjct: 132 AGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWF 175

Length = 445

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 15/175 (8%)

Query: 98  VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
             + +G +IG+GIFV   G+ A        I+ + + GL +   AL YAEL   +  +G 
Sbjct: 11  TMLGIGAMIGTGIFVV-TGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPVAGS 68

Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVL--- 214
            Y Y   A GEL AF+  W  L +      A VA+ +  Y ++ F P   L   AVL   
Sbjct: 69  PYTYAYEAMGELTAFIIGWS-LWLEYGVAVAAVAVGWGGY-LQEFLPGVGLDLPAVLTAK 126

Query: 215 --------LLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261
                   L A   +  LT +  +    + +V  +  V K+ AL    A G  + 
Sbjct: 127 PGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF 181

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 9/163 (5%)

Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGD 158
           +++G +IGSGIF  P   LA     G  I+ W + G+     A  +A L T      GG 
Sbjct: 17  LVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGI 75

Query: 159 YAYILVAFGELPAFLR---LWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLL 215
           YAY    FG    F+     W++  I      A++  +   Y    F   + +P    +L
Sbjct: 76  YAYAREGFGPYIGFMSGWGYWLSAWIGN-VAYAVLLFSALGYFFPLFGSGNPVP---SIL 131

Query: 216 LAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGI 258
            A+  L V T +    V  A  + T+ T+ KL+ LF  I  G 
Sbjct: 132 GASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGW 174

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 24/180 (13%)

Query: 98  VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLLSTIGALCYAELGTCISRSG 156
           +++ +G  IG+GI+V   G +A   S G +IV+ + + GL + +   CYAE G  + ++G
Sbjct: 36  MALGIGSTIGAGIYVL-TGEVARNDS-GPAIVLSFLISGLAAVLSGFCYAEFGARVPKAG 93

Query: 157 GDYAYILVAFGELPAFLRLWVALLIMRPTTQAIV---ALTFAQYAIKP---FFPD----- 205
             Y Y  V  GEL AF+  W  +L     T A+    +  F +   K    F        
Sbjct: 94  SAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLN 153

Query: 206 ----SELPDRAVLLLAAACLCVLTAV-NCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGY 260
               +E PD       A CL +L AV     V  +  V  +FT   ++ L  +I AG   
Sbjct: 154 YDGLAEYPD-----FFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTK 208

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 37  SSNFDHAWDG-NYDITKISLALYSGLFAFGGWNYLNFVVDELQDPY 81
           S N  +A++G       I LA YSG++A+GGWNYLNFV +E+++PY
Sbjct: 220 SLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY 265

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 26/168 (15%)

Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CYAELGTCISRS 155
           ++ G I+GSG+F+ PA  LA T   G++I  W    L++ IGAL     YA++ +     
Sbjct: 18  MVAGNIMGSGVFLLPAN-LASTG--GIAIYGW----LVTIIGALGLSMVYAKMSSLDPSP 70

Query: 156 GGDYAYILVAFGELPAF---LRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRA 212
           GG YAY    FG    +   +  W+A  I       ++ + +  Y    FFP  + P   
Sbjct: 71  GGSYAYARRCFGPFLGYQTNVLYWLACWIGN-IAMVVIGVGYLSY----FFPILKDP--- 122

Query: 213 VLLLAAACLCVL---TAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG 257
            L+L   C+ VL     +N +      +VQ + TV  L+ + GI   G
Sbjct: 123 -LVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG 169

Length = 445

>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGL-----LSTIGALCYAELGTCIS 153
           I +G  IG+G+F+     +A     G S+++ + + G+     +  +G +  A      S
Sbjct: 23  IAIGGAIGTGLFLGSGSAIAMA---GPSVLLAYLIAGIFVFLIMRALGEMLVANPV---S 76

Query: 154 RSGGDYAYILVAFGELPAFLRLWV--ALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDR 211
            S  DYA      G    FL  W      ++    +      + Q+    +FPD      
Sbjct: 77  GSFSDYAR--KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQF----WFPDVPQ--- 127

Query: 212 AVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGIGL 265
              + A A + +L AVN +SV    +++  F + K+ A+   I  GI  L  G 
Sbjct: 128 --WVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGF 179

Length = 462

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG1287|consensus	479		99.92
TIGR00911	501	2A0308 L-type amino acid transporter.	99.91
PRK11387	471	S-methylmethionine transporter; Provisional	99.89
PRK10249	458	phenylalanine transporter; Provisional	99.89
PRK15049	499	L-asparagine permease; Provisional	99.88
PRK10238	456	aromatic amino acid transporter; Provisional	99.87
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.87
PRK10746	461	putative transport protein YifK; Provisional	99.87
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.87
PRK10836	489	lysine transporter; Provisional	99.87
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.86
PRK10644	445	arginine:agmatin antiporter; Provisional	99.86
PRK10655	438	potE putrescine transporter; Provisional	99.86
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.85
PRK10580	457	proY putative proline-specific permease; Provision	99.85
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.85
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.84
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.84
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.84
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.83
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.82
TIGR00913	478	2A0310 amino acid permease (yeast).	99.82
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.81
TIGR00909	429	2A0306 amino acid transporter.	99.8
PRK11021	410	putative transporter; Provisional	99.79
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.79
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.79
TIGR00930	953	2a30 K-Cl cotransporter.	99.78
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.78
KOG1289|consensus	550		99.77
KOG1286|consensus	554		99.74
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.73
PRK15238	496	inner membrane transporter YjeM; Provisional	99.65
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.64
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.59
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.53
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.51
TIGR00912	359	2A0309 spore germination protein (amino acid perme	99.49
PHA02764	399	hypothetical protein; Provisional	99.33
KOG1287|consensus	479		99.2
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	98.99
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.9
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.84
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.8
PRK10483	414	tryptophan permease; Provisional	98.62
PRK09664	415	tryptophan permease TnaB; Provisional	98.49
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	98.43
PRK15132	403	tyrosine transporter TyrP; Provisional	98.42
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.42
KOG2083|consensus	643		98.04
KOG2082|consensus	1075		97.91
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	97.82
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	97.76
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	97.59
KOG1288|consensus	945		97.44
PRK10655	438	potE putrescine transporter; Provisional	97.44
PRK11021	410	putative transporter; Provisional	97.26
PRK10644	445	arginine:agmatin antiporter; Provisional	97.04
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.02
PRK11375	484	allantoin permease; Provisional	96.77
TIGR00911	501	2A0308 L-type amino acid transporter.	96.75
PRK10249	458	phenylalanine transporter; Provisional	96.66
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	96.62
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.51
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	96.49
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	96.48
PRK10197	446	gamma-aminobutyrate transporter; Provisional	96.44
PRK11357	445	frlA putative fructoselysine transporter; Provisio	96.15
TIGR00913	478	2A0310 amino acid permease (yeast).	96.13
PRK11387	471	S-methylmethionine transporter; Provisional	96.03
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	95.96
TIGR00909	429	2A0306 amino acid transporter.	95.93
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	95.89
PRK15049	499	L-asparagine permease; Provisional	95.87
TIGR00907	482	2A0304 amino acid permease (GABA permease).	95.82
PRK10836	489	lysine transporter; Provisional	95.75
PRK10238	456	aromatic amino acid transporter; Provisional	95.61
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	95.56
PRK10580	457	proY putative proline-specific permease; Provision	95.49
TIGR00906	557	2A0303 cationic amino acid transport permease.	95.42
PRK10746	461	putative transport protein YifK; Provisional	95.34
PRK11017	404	codB cytosine permease; Provisional	95.25
PRK15433	439	branched-chain amino acid transport system 2 carri	95.12
COG1457	442	CodB Purine-cytosine permease and related proteins	95.12
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	95.06
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	94.98
PTZ00206	467	amino acid transporter; Provisional	94.93
TIGR00813	407	sss transporter, SSS family. have different number	94.85
KOG1303|consensus	437		94.8
PRK15238	496	inner membrane transporter YjeM; Provisional	94.37
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	94.3
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	94.21
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	94.05
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	93.93
KOG1304|consensus	449		93.93
COG1953	497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	93.48
KOG1289|consensus	550		93.38
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	93.11
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	93.04
PRK09395	551	actP acetate permease; Provisional	92.83
COG0531	466	PotE Amino acid transporters [Amino acid transport	92.69
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	92.57
COG3949	349	Uncharacterized membrane protein [Function unknown	92.56
PRK12488	549	acetate permease; Provisional	92.47
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	92.21
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	91.98
PRK09442	483	panF sodium/panthothenate symporter; Provisional	91.74
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	91.61
PRK15419	502	proline:sodium symporter PutP; Provisional	90.52
PRK10484	523	putative transporter; Provisional	89.63
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	89.37
PF01566	358	Nramp: Natural resistance-associated macrophage pr	89.25
KOG1286|consensus	554		89.13
PLN03074	473	auxin influx permease; Provisional	88.66
PRK00701	439	manganese transport protein MntH; Reviewed	88.52
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	86.08
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	85.74
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	85.54

>KOG1287|consensus

Probab=99.92  E-value=2e-24  Score=198.45  Aligned_cols=179  Identities=60%  Similarity=0.977  Sum_probs=169.2

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      .++|||++++..+.+.+++++|+|+|..|..++..+|+.+.++..|++++++++..++||+||++.+|++||+|.|..+.
T Consensus         8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~a   87 (479)
T KOG1287|consen    8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEA   87 (479)
T ss_pred             ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHH
Confidence            35899999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      |||.+||+..|.-+++..+...+..+..+++|....++|..+.|.+...+++.+++++++++|+.++|+..|+|.+++..
T Consensus        88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~  167 (479)
T KOG1287|consen   88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIA  167 (479)
T ss_pred             hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            99999999999999977888889999999999666678877788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcC
Q psy9204         246 KLVALFGIIAAGIGYLGIG  264 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~~~g  264 (265)
                      |++.+.++++.|++....|
T Consensus       168 Kl~al~lIii~G~~~~~~g  186 (479)
T KOG1287|consen  168 KLLALLLIIITGLYLLFWG  186 (479)
T ss_pred             HHHHHHHHHHhchheeEec
Confidence            9999999999999977665

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.91  E-value=1e-22  Score=192.98  Aligned_cols=177  Identities=55%  Similarity=0.984  Sum_probs=155.6

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+++.+++++++++.++|+|++..++.++..+|+.+..+++|++++++.++.+++++|+++++|++||.|+|+++.
T Consensus        38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~  117 (501)
T TIGR00911        38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV  117 (501)
T ss_pred             cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH
Confidence            46999999999999999999999999999998888887666677899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||..||+.+|..++...+...+..+..+++|+...+.++...+.+...+++++++++.+++|++|+|..+|+|++.+++
T Consensus       118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~  197 (501)
T TIGR00911       118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTAC  197 (501)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99999999999987644456667777778888754455665566677788888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy9204         246 KLVALFGIIAAGIGYLG  262 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~~  262 (265)
                      |+++++++++.++....
T Consensus       198 ~l~~l~~~ii~~~~~~~  214 (501)
T TIGR00911       198 KLLALLLIIITGWVQLG  214 (501)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999888887654

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.89  E-value=6.8e-22  Score=186.11  Aligned_cols=175  Identities=16%  Similarity=0.282  Sum_probs=143.8

Q ss_pred             CCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCch
Q psy9204          79 DPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGD  158 (265)
Q Consensus        79 ~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~  158 (265)
                      +|++...+++||+++.+++.+++++.++|+|+|..++.++..+|+.+ .+++|++++++.++.+++++||++++|++||.
T Consensus         3 ~~~~~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~-~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~   81 (471)
T PRK11387          3 EPTSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAG-TLLAYLIGALVVYLVMQCLGELSVAMPETGAF   81 (471)
T ss_pred             CCCCCcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            34442335799999999999999999999999999999988877533 57789999999999999999999999999999


Q ss_pred             HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204         159 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV  238 (265)
Q Consensus       159 y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i  238 (265)
                      |.|+++.+||..||++||.+|+ .+....+........++. .+.|+  .+.   +....+++++++.+|++|+|..+++
T Consensus        82 y~y~~~~~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~-~~~p~--~~~---~~~~~~~~~~~~~in~~gvk~~~~~  154 (471)
T PRK11387         82 HVYAARYLGPATGYTVAWLYWL-TWTVALGSSLTAAGFCMQ-YWFPQ--VPV---WPWCLLFCALIFGLNVVSTRFFAEG  154 (471)
T ss_pred             HHHHHHhcChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hccCc--CcH---HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999998 666666555555555544 34443  232   2344455677889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q psy9204         239 QTLFTVGKLVALFGIIAAGIGYL  261 (265)
Q Consensus       239 ~~v~~~~~i~~~~~~ii~g~~~~  261 (265)
                      |.+.+.+|++.++.+++.++...
T Consensus       155 ~~~~~~~ki~~l~~~ii~g~~~~  177 (471)
T PRK11387        155 EFWFSLIKVVTILAFIVLGGAAI  177 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888887654

>PRK10249 phenylalanine transporter; Provisional

Probab=99.89  E-value=8.2e-22  Score=184.94  Aligned_cols=168  Identities=22%  Similarity=0.296  Sum_probs=145.1

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+++.+++..++++.++|+|+|..++..+..+|+  ..+++|++++++.++.+++++|+++++|.+||.|.|+++.
T Consensus        17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp--~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~   94 (458)
T PRK10249         17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP--AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKY   94 (458)
T ss_pred             hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            47999999999999999999999999999999988775  3667899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||.+||++||.+|+ .+....+......+.++.. +.|+.  +   .+.+..+++++.+++|++|+|..+|+|.+.+.+
T Consensus        95 ~g~~~gf~~gw~~~~-~~~~~~~~~~~a~~~~~~~-~~~~~--~---~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~i  167 (458)
T PRK10249         95 WGPFAGFLSGWNYWV-MFVLVGMAELTAAGIYMQY-WFPDV--P---TWIWAAAFFIIINAVNLVNVRLYGETEFWFALI  167 (458)
T ss_pred             hChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCcC--c---HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            999999999999999 5555556666666677663 44432  2   345567778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy9204         246 KLVALFGIIAAGIGYLG  262 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~~  262 (265)
                      |++.++++++.++....
T Consensus       168 kv~~i~~~i~~~i~~~~  184 (458)
T PRK10249        168 KVLAIIGMIGFGLWLLF  184 (458)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998888888876543

>PRK15049 L-asparagine permease; Provisional

Probab=99.88  E-value=1.2e-21  Score=185.56  Aligned_cols=169  Identities=21%  Similarity=0.345  Sum_probs=141.7

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+++.+++.++++|.++|+|+|..++.++..+|+  ..+++|++++++.++++.+++||++++|++||.|.|+++.
T Consensus        24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp--~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~  101 (499)
T PRK15049         24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP--ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF  101 (499)
T ss_pred             hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            45999999999999999999999999999999988876  3567899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCC-CchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE-LPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV  244 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~  244 (265)
                      +||..||++||.+|+ .+....+......+.+...  .+..+ .+   .++++.+++++++.+|++|+|..+++|+++++
T Consensus       102 ~G~~~gf~~GW~~~l-~~~~~~~~~~~a~~~~~~~--~~~~~~~~---~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~  175 (499)
T PRK15049        102 LGEKAAYVAGWMYFI-NWAMTGIVDITAVALYMHY--WGAFGGVP---QWVFALAALTIVGTMNMIGVKWFAEMEFWFAL  175 (499)
T ss_pred             hCcHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--hccCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 5554444444444455432  22221 23   34567778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy9204         245 GKLVALFGIIAAGIGYLG  262 (265)
Q Consensus       245 ~~i~~~~~~ii~g~~~~~  262 (265)
                      +|++.++++++.++....
T Consensus       176 iki~~l~~~ii~~i~~~~  193 (499)
T PRK15049        176 IKVLAIVTFLVVGTVFLG  193 (499)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999998888876543

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.87  E-value=3.9e-21  Score=180.27  Aligned_cols=167  Identities=19%  Similarity=0.270  Sum_probs=145.7

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+|+.++...++++.++|+|+|..++.++..+|+  ..+++|++++++.++++++++|+++++|.+||.|+|++|.
T Consensus         8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp--~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~   85 (456)
T PRK10238          8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP--GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY   85 (456)
T ss_pred             hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            46999999999999999999999999999999988775  4677899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||..||++||.+++ .+....+.....+++++.. +.|+  .+.   +....+++++++.+|++|+|..+++|.+.+++
T Consensus        86 ~g~~~gf~~Gw~~~~-~~~~~~~~~~~~~~~~~~~-~~p~--~~~---~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~i  158 (456)
T PRK10238         86 WGSFAGFASGWNYWV-LYVLVAMAELTAVGKYIQF-WYPE--IPT---WVSAAVFFVVINAINLTNVKVFGEMEFWFAII  158 (456)
T ss_pred             cCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCc--CcH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999999999 7777777777778888763 4443  232   34566667889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      |++.++++++.++..+
T Consensus       159 ki~~i~~~ii~~~~~~  174 (456)
T PRK10238        159 KVIAVVAMIIFGGWLL  174 (456)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999888888776543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.87  E-value=3.9e-21  Score=179.65  Aligned_cols=172  Identities=26%  Similarity=0.334  Sum_probs=146.7

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+++.++.++++++.++|+|++..++.+...+|+++..+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus         4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~   83 (445)
T PRK11357          4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA   83 (445)
T ss_pred             ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence            46999999999999999999999999999988877787666788899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||..||+.+|..++.......+..+..+.+|+.. ..|.   +......++.+++++++.+|++|+|..+|+|++.+++
T Consensus        84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~  159 (445)
T PRK11357         84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA  159 (445)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999855424555666777788888763 3332   2233456677777888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      |+++++++++.++...
T Consensus       160 ~~~~l~~~ii~g~~~~  175 (445)
T PRK11357        160 KIIPFTIVIGLGIFWF  175 (445)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999988888887643

>PRK10746 putative transport protein YifK; Provisional

Probab=99.87  E-value=7.4e-21  Score=178.59  Aligned_cols=166  Identities=17%  Similarity=0.239  Sum_probs=144.4

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+++.+++..+++|.++|+|+|..++..+..+|+  ..+++|++++++.++++++++||++++|++||.|.|++|.
T Consensus         6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp--~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~   83 (461)
T PRK10746          6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP--SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRY   83 (461)
T ss_pred             hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            46999999999999999999999999999999988775  3667899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||.+||.+||.+|+ .+....+......+.++.. ++|+.  +   .+....+++++.+.+|++|+|..+++|.+.+.+
T Consensus        84 ~g~~~Gf~~gw~~~~-~~~~~~~~~~~a~~~~l~~-~~p~~--~---~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~  156 (461)
T PRK10746         84 MSPFFGYLTAWSYWF-MWMAVGISEITAIGVYVQF-WFPEM--A---QWIPALIAVALVALANLAAVRLYGEIEFWFAMI  156 (461)
T ss_pred             hCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-ccCCC--c---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999999999 6666666666677777763 55542  2   234556667888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9204         246 KLVALFGIIAAGIGY  260 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~  260 (265)
                      |++.++++++.++..
T Consensus       157 ki~~i~~~ii~~~~~  171 (461)
T PRK10746        157 KVTTIIVMIVIGLGV  171 (461)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988888754

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.87  E-value=8.7e-21  Score=177.65  Aligned_cols=167  Identities=21%  Similarity=0.277  Sum_probs=146.9

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      .++||+|+.++..+++++.++|+|+|..++..+..+|+  ..+++|++++++.++.+++++||++++|++||.|.|+++.
T Consensus         8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~--~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~   85 (452)
T TIGR01773         8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP--AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA   85 (452)
T ss_pred             HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            35899999999999999999999999999999988775  3567899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||..||+++|.+|+ .+....+......+.++.. +.|+.  +   .+.++.+++++++.+|++|+|..+++|++.+++
T Consensus        86 ~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~~~~--~---~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~  158 (452)
T TIGR01773        86 IGRWAGFTIGWLYWW-FWVLVIPLEAIAAAGILQY-WFPDI--P---LWLFSLILTIVLTLTNLYSVKSYGEFEFWFALI  158 (452)
T ss_pred             hCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcC--c---HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            999999999999999 7777777777888888774 44542  2   446778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      |++.++.+++.++...
T Consensus       159 ki~~l~~~ii~~~~~~  174 (452)
T TIGR01773       159 KVIAIIAFIILGAVAI  174 (452)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988888876543

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10836 lysine transporter; Provisional

Probab=99.87  E-value=1e-20  Score=178.97  Aligned_cols=168  Identities=22%  Similarity=0.284  Sum_probs=139.6

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+++.+++.++++|.++|+|+|..++.++..+|+ +..+++|+++++++++.++||+||++++|++||.|.|+++.
T Consensus        11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp-~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~   89 (489)
T PRK10836         11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGP-GGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNY   89 (489)
T ss_pred             ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence            56999999999999999999999999999999998775 34678899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||..||+.||.+++ .+....+...... .+....+.|+.  +.   +....+++++++.+|++|+|..+++|.+.+..
T Consensus        90 ~g~~~gf~~Gw~~~~-~~~~~~a~~~~a~-~~~~~~~~~~~--~~---~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~  162 (489)
T PRK10836         90 VEEGFGFALGWNYWY-NWAVTIAVDLVAA-QLVMSWWFPDT--PG---WIWSALFLGVIFLLNYISVRGFGEAEYWFSLI  162 (489)
T ss_pred             cChHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhhcCCCC--ch---HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence            999999999999998 5555544433333 33333344432  22   23455666778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      |++.++.+++.++...
T Consensus       163 ki~~~~~~i~~~~~~~  178 (489)
T PRK10836        163 KVTTVIVFIIVGVLMI  178 (489)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998888887664

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.86  E-value=5.8e-21  Score=182.94  Aligned_cols=174  Identities=23%  Similarity=0.369  Sum_probs=145.8

Q ss_pred             ccccccccchhhhHHhhhccccceeeecchHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAE-TQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  163 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~-~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~  163 (265)
                      +++++|+++.+++++++++.++|+|+|..++.++.. +|+  ..+++|+++++.+++.++||+|+++++|++||.|.|++
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp--~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~  100 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGP--AIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSY  100 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCc--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHH
Confidence            346999999999999999999999999999887654 443  36678999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC---C-------CCCch--HHHHHHHHHHHHHHHHHHhhh
Q psy9204         164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP---D-------SELPD--RAVLLLAAACLCVLTAVNCMS  231 (265)
Q Consensus       164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~---~-------~~~~~--~~~~~i~~~~l~~~~~in~~g  231 (265)
                      +.+||.+||+.||.+++ .+....+..+..++.|+...+..   .       ...+.  ....+++++++++++.+|++|
T Consensus       101 ~~~G~~~gfi~GW~~~l-~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G  179 (557)
T TIGR00906       101 VTVGELWAFITGWNLIL-EYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG  179 (557)
T ss_pred             HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence            99999999999999999 77788888888888887643210   0       00010  123456777788889999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204         232 VSWAMQVQTLFTVGKLVALFGIIAAGIGYL  261 (265)
Q Consensus       232 vk~~~~i~~v~~~~~i~~~~~~ii~g~~~~  261 (265)
                      +|.++|+|++++.+|++.++++++.|+.+.
T Consensus       180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~  209 (557)
T TIGR00906       180 VKESAWVNKIFTAINILVLLFVIIAGFTKA  209 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHHHhhC
Confidence            999999999999999999999999988754

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.86  E-value=1.3e-20  Score=176.17  Aligned_cols=170  Identities=21%  Similarity=0.314  Sum_probs=139.7

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      .+.+|++++++++++.++.++|+|++..++.+... |  +..+++|+++++..++.+++++||++++|++||.|.|+++.
T Consensus         4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g--~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~   80 (445)
T PRK10644          4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-G--GIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC   80 (445)
T ss_pred             CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence            35788999999999999999999999999886654 3  34677899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||.+||+++|.+|+ .+.............+... ++|.. .+++...++..+++++++.+|++|+|..+|+|++.+.+
T Consensus        81 ~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~  157 (445)
T PRK10644         81 FGPFLGYQTNVLYWL-ACWIGNIAMVVIGVGYLSY-FFPIL-KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL  157 (445)
T ss_pred             cCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hhccc-CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            999999999999998 4433444444344455543 44433 23455667778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      |++.++++++.++...
T Consensus       158 ~~i~l~~~~~~~~~~~  173 (445)
T PRK10644        158 ALIPIVGIAVFGWFWF  173 (445)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9998888888776543

>PRK10655 potE putrescine transporter; Provisional

Probab=99.86  E-value=2e-20  Score=174.53  Aligned_cols=168  Identities=20%  Similarity=0.298  Sum_probs=141.1

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhC
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG  167 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g  167 (265)
                      .||++++++++++.++.++|+|++..|..+. ..|+  ..+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~--~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G   80 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGT--ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFG   80 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcC
Confidence            5789999999999999999999999998755 4454  456789999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204         168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL  247 (265)
Q Consensus       168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i  247 (265)
                      |..||+.+|.+++ .+.......+.....|+.. ++|. ..+++...++.++++++++++|++|+|..+|+|++.+..++
T Consensus        81 ~~~gf~~gw~~~~-~~~~~~~~~a~~~~~y~~~-~~~~-~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l  157 (438)
T PRK10655         81 KSGNFMANYTYGV-SLLIANVAIAISAVGYGTE-LFGA-TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVI  157 (438)
T ss_pred             cchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hccc-ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            9999999999998 5544444555666677764 4442 23445666777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy9204         248 VALFGIIAAGIGYL  261 (265)
Q Consensus       248 ~~~~~~ii~g~~~~  261 (265)
                      ++++++++.++...
T Consensus       158 ~~l~~~~i~~~~~~  171 (438)
T PRK10655        158 IPVVGLSIIGWFWF  171 (438)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98888888776553

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.85  E-value=2.3e-20  Score=175.86  Aligned_cols=171  Identities=27%  Similarity=0.341  Sum_probs=142.3

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHHHh
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVAF  166 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~~~  166 (265)
                      .+|+++.+++.++.++.++|+|++..|..+...+ +++..+++|++++++.++.+++|+|+++++|+ +||.|.|+++.+
T Consensus         5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~-g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~   83 (473)
T TIGR00905         5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVA-GPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF   83 (473)
T ss_pred             cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence            4789999999999999999999999999877654 34456778999999999999999999999999 999999999999


Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCC-CchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE-LPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      ||..||+.||.+|+ .........+....+++.. ++|... .+++...+++++++++.+.+|++|+|..+|+|++.+.+
T Consensus        84 G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~  161 (473)
T TIGR00905        84 GPYIGFMSGWGYWL-SAWIGNVAYAVLLFSALGY-FFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIA  161 (473)
T ss_pred             ccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            99999999999988 5444445555555566653 444221 23455667778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      |+++++++++.++...
T Consensus       162 ~l~~l~~~ii~~~~~~  177 (473)
T TIGR00905       162 KLIPLFLFIIIGWFWF  177 (473)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999888887643

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.85  E-value=2.9e-20  Score=174.44  Aligned_cols=166  Identities=19%  Similarity=0.280  Sum_probs=141.2

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      +++||+++.++..+++++.++|+|++..++.....+|+  ..+++|++++++.++.+++++|+++++|++||.|.|++|.
T Consensus         5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~--~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~   82 (457)
T PRK10580          5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP--SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN   82 (457)
T ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            46899999999999999999999999999998887665  3578899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +||.+||++||.+++ .+....+.....++.++.. +.|..  +.   ....++++++.+.+|++|+|..+|+|.+.+.+
T Consensus        83 ~G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~--~~---~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~  155 (457)
T PRK10580         83 LGPLAGYITGWTYCF-EILIVAIADVTAFGIYMGV-WFPTV--PH---WIWVLSVVLIICAVNLMSVKVFGELEFWFSFF  155 (457)
T ss_pred             cCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hCCCC--Ch---HHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            999999999999998 6666666666677777763 44432  22   23455566788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9204         246 KLVALFGIIAAGIGY  260 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~  260 (265)
                      |++.++++++.++..
T Consensus       156 ~~~~l~~~ii~~~~i  170 (457)
T PRK10580        156 KVATIIIMIVAGIGI  170 (457)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888877543

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.85  E-value=4.7e-20  Score=173.80  Aligned_cols=173  Identities=20%  Similarity=0.240  Sum_probs=141.1

Q ss_pred             ccccccccchhhhHHhhhccc-cceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCI-IGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  163 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~v-ig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~  163 (265)
                      +|++||+++.++.++++++.+ ++.|++..++..+..+|+  ..+++|+++++..++.+++++||++++|++||+|+|++
T Consensus         8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp--~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~   85 (475)
T TIGR03428         8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP--AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR   85 (475)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence            467999999999999999984 778999999888887665  46788999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhh------c--CCCCC--CchHHHHHHHHHHHHHHHHHHhhhhh
Q psy9204         164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKP------F--FPDSE--LPDRAVLLLAAACLCVLTAVNCMSVS  233 (265)
Q Consensus       164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~------~--~~~~~--~~~~~~~~i~~~~l~~~~~in~~gvk  233 (265)
                      +.+||.+||++||.+++ .+....+........++...      +  .+++.  .+.++..+++.+++++++.+|++|+|
T Consensus        86 ~~~g~~~gf~~gW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k  164 (475)
T TIGR03428        86 RMGGEVIGWFAGWFMII-AQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE  164 (475)
T ss_pred             HHcCccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999998 66555555555544444221      1  11221  12356778888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         234 WAMQVQTLFTVGKLVALFGIIAAGIGY  260 (265)
Q Consensus       234 ~~~~i~~v~~~~~i~~~~~~ii~g~~~  260 (265)
                      ..+|+|++..+++++.++++++.++.+
T Consensus       165 ~~~~i~~~~~~~~i~~l~~iii~~~~~  191 (475)
T TIGR03428       165 WMSRVNTIGVTCEIVGVLAVIGVLFTH  191 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998888777766544

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.84  E-value=1.1e-19  Score=171.12  Aligned_cols=168  Identities=17%  Similarity=0.239  Sum_probs=144.8

Q ss_pred             ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  164 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~  164 (265)
                      ++++||+++.++..++++|.++|+|+|..++.++..+|+  ..+++|++++++.++.+++++|+++..|..|+.|.|+++
T Consensus        15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp--~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~   92 (469)
T PRK11049         15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP--SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASD   92 (469)
T ss_pred             chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            357999999999999999999999999999999988775  357789999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV  244 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~  244 (265)
                      .+||.+||+.||.+++ .+....+..+..+..++.. ++|+.  +   .+.++.+++++++.+|++|+|..+++|++.+.
T Consensus        93 ~~g~~~gf~~gW~~~~-~~~~~~~a~~~a~~~~~~~-~~p~~--~---~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~  165 (469)
T PRK11049         93 LLGPWAGYFTGWTYWF-CWVVTGIADVVAITAYAQF-WFPDL--S---DWVASLAVVLLLLSLNLATVKMFGEMEFWFAM  165 (469)
T ss_pred             HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCC--c---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999998 5555555556667777763 44543  2   23455567788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy9204         245 GKLVALFGIIAAGIGYL  261 (265)
Q Consensus       245 ~~i~~~~~~ii~g~~~~  261 (265)
                      +|++.++.+++.++...
T Consensus       166 ~kl~~l~~~ii~g~~~~  182 (469)
T PRK11049        166 IKIVAIVALIVVGLVMV  182 (469)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998765

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.84  E-value=8.8e-20  Score=171.63  Aligned_cols=169  Identities=25%  Similarity=0.333  Sum_probs=137.4

Q ss_pred             cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccC-CchHHhHHHHhCc
Q psy9204          90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS-GGDYAYILVAFGE  168 (265)
Q Consensus        90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~-GG~y~~~~~~~g~  168 (265)
                      |+++++++.++.++.++|+|+|..|+.++..+| ++..+++|++++++.++.+++++|+++++|++ ||.|.|+++.+||
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag-~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~   79 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAA-AGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP   79 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence            689999999999999999999999999887765 44567789999999999999999999999996 5999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCC-chHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204         169 LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSEL-PDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL  247 (265)
Q Consensus       169 ~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i  247 (265)
                      ..||+.+|.+|+ .+.............++. .++|.... ++.....++.+++++++++|++|+|..+|+|++.+++|+
T Consensus        80 ~~gf~~gw~~w~-~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki  157 (468)
T TIGR03810        80 FMGFISAWGYWL-SAWLGNVAYATLLFSTLG-YFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKL  157 (468)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            999999999998 443333333333444443 23443321 223445666777788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy9204         248 VALFGIIAAGIGYL  261 (265)
Q Consensus       248 ~~~~~~ii~g~~~~  261 (265)
                      ++++++++.++...
T Consensus       158 ~~l~~~ii~~~~~~  171 (468)
T TIGR03810       158 VPLFVFIVIGIFAF  171 (468)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999988887654

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.84  E-value=1.4e-19  Score=168.91  Aligned_cols=167  Identities=22%  Similarity=0.277  Sum_probs=136.7

Q ss_pred             ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204          87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      +.+|+++.+++.++.++.++|+|++.+|+.+.. +|+  ..+++|+++++.+++.+++++||++++|++||.|.|++| +
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~-~G~--~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~   77 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLAS-IGS--IAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-I   77 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-hHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence            457899999999999999999999999998654 453  467789999999999999999999999999999999999 8


Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204         167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK  246 (265)
Q Consensus       167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~  246 (265)
                      ||.+||.++|.+|. ...............|+.. ++|.... ++...+++++++++++++|++|+|..+++|.+..+++
T Consensus        78 g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~y~~~-~~p~~~~-~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~  154 (435)
T PRK10435         78 SPAFGFQTGVLYYH-ANWIGNLAIGITAVSYLST-FFPVLND-PIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLV  154 (435)
T ss_pred             CcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HccccCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999997 3334444555666677764 4554332 2344566777888899999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q psy9204         247 LVALFGIIAAGIGY  260 (265)
Q Consensus       247 i~~~~~~ii~g~~~  260 (265)
                      +++++.+++.++.+
T Consensus       155 li~~~~~~i~g~~~  168 (435)
T PRK10435        155 LIPVVGTAIVGWHW  168 (435)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877777666543

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.83  E-value=5e-19  Score=160.94  Aligned_cols=171  Identities=22%  Similarity=0.282  Sum_probs=157.7

Q ss_pred             ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  164 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~  164 (265)
                      ++++||.|+.++...+++|..+|+|.|...+.....+|+  ..++++++++++.+++.-+++||..+-|++|+.-+|+++
T Consensus         8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP--SvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~   85 (462)
T COG1113           8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP--SVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK   85 (462)
T ss_pred             chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence            346999999999999999999999999999999999885  355679999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV  244 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~  244 (265)
                      .+||+.||++||.||+ .+.....+.....+.|++ .++|+.  |   +|+.+++++++...+|+.++|..+.++..+..
T Consensus        86 ~lG~~Agf~tgW~YW~-~wv~v~~ae~tAi~~y~~-~WfP~v--P---~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl  158 (462)
T COG1113          86 YLGPWAGFLTGWTYWF-FWVLVGIAELTAIGIYLQ-FWFPDV--P---QWVFALAAVVLLLAVNLISVKVFGELEFWFAL  158 (462)
T ss_pred             HhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhcCCC--c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 888889999999999998 477775  3   56788888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcC
Q psy9204         245 GKLVALFGIIAAGIGYLGIG  264 (265)
Q Consensus       245 ~~i~~~~~~ii~g~~~~~~g  264 (265)
                      +|++.++.++++|+..+.+|
T Consensus       159 IKV~aIi~~Iv~G~~ll~~g  178 (462)
T COG1113         159 IKVAAIIAFIVVGIVLLFGG  178 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999998765

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.82  E-value=2.2e-19  Score=166.26  Aligned_cols=171  Identities=20%  Similarity=0.243  Sum_probs=153.5

Q ss_pred             ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204          87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      ++||+|+.+++.++++|..+|+|.|+..+..+..+|+ +..+++|++.+++..++..|+.||+..+|.+|+...|+.|..
T Consensus        41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP-~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv  119 (541)
T COG0833          41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGP-AGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV  119 (541)
T ss_pred             hhhhhhhHHHHHHHHhccccccceeeecchhhhccCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence            6999999999999999999999999999999988775 457789999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204         167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK  246 (265)
Q Consensus       167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~  246 (265)
                      +|.+||..||.||+ .|....+....+.+..++ .+.|+. .|   ......++.+++..+|++++|..+..+..+..+|
T Consensus       120 dpa~GFa~gWnYw~-~w~v~~~~El~aa~~vi~-yW~p~~-v~---~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iK  193 (541)
T COG0833         120 DPAFGFALGWNYWL-NWAVTLPLELTAASLVIQ-YWFPDT-VP---PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIK  193 (541)
T ss_pred             CchHHHHHHHHHHH-HHHHHhhHHHHHHHHhhh-hhcCCC-CC---hHHHHHHHHHHHHHHHHhcccccceehHHHHHHH
Confidence            99999999999999 888888888888877776 455543 22   3466677788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q psy9204         247 LVALFGIIAAGIGYLGIG  264 (265)
Q Consensus       247 i~~~~~~ii~g~~~~~~g  264 (265)
                      ++.++.+++.|++...+|
T Consensus       194 V~~ii~Fii~gii~~~Gg  211 (541)
T COG0833         194 VLTIIGFIILGIIIICGG  211 (541)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999988765

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.82  E-value=4.6e-19  Score=167.10  Aligned_cols=166  Identities=17%  Similarity=0.138  Sum_probs=138.8

Q ss_pred             ccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHHHhC
Q psy9204          89 GQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVAFG  167 (265)
Q Consensus        89 ~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~~~g  167 (265)
                      ||+|+.+++.+++++.++|+|++..++..+..+|+ ...+++|++++++.++.+++++||++++|+ .||.|.|+++.+|
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp-~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g   79 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGP-AGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD   79 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence            68999999999999999999999999999988764 345778999999999999999999999996 5567789999999


Q ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204         168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL  247 (265)
Q Consensus       168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i  247 (265)
                      |..||++||.+|+ .+....+......+.++.. +.+..+  .+   ....+++++++++|++|+|..+|+|++.+.+|+
T Consensus        80 ~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki  152 (478)
T TIGR00913        80 PAFGFAVGWNYWL-QWLIVLPLELVTASMTIQY-WTDKVN--PA---VWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKI  152 (478)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCCCC--HH---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            9999999999999 6777777777777777763 434322  11   222345567889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy9204         248 VALFGIIAAGIGYLG  262 (265)
Q Consensus       248 ~~~~~~ii~g~~~~~  262 (265)
                      +.++.+++.++....
T Consensus       153 ~~l~~~ii~~i~~~~  167 (478)
T TIGR00913       153 LAIIGFIILSIILNC  167 (478)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988888877653

>TIGR00908 2A0305 ethanolamine permease

Probab=99.81  E-value=1.1e-18  Score=163.09  Aligned_cols=163  Identities=25%  Similarity=0.243  Sum_probs=135.3

Q ss_pred             ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  164 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~  164 (265)
                      ++++||+++.++.++++++.+++ |.+...+..+...|+ ...+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus         2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~-~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~   79 (442)
T TIGR00908         2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGW-GGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR   79 (442)
T ss_pred             CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            35799999999999999999887 666665554555443 3456778999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV  244 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~  244 (265)
                      .+||..||+.+|.+++ .+....+..+..+++|+.. ++|..  +   .+.+..+++++.+++|++|+|..+|+|.+..+
T Consensus        80 ~~G~~~gf~~gw~~~~-~~~~~~~~~a~~~~~~l~~-~~p~~--~---~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~  152 (442)
T TIGR00908        80 AFGPWGGFLAGTAILI-EFAFAPPAIACFIGAYCES-LFPVG--P---GWLAALVFYIVFIGINILGVGEAAKLEFVVTA  152 (442)
T ss_pred             HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhccC--c---hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999998 7778888888889999875 44542  2   23566677788899999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy9204         245 GKLVALFGIIAA  256 (265)
Q Consensus       245 ~~i~~~~~~ii~  256 (265)
                      ++++.++++++.
T Consensus       153 ~~~~~l~i~~~~  164 (442)
T TIGR00908       153 VAIIALGVFIGA  164 (442)
T ss_pred             HHHHHHHHHHHH
Confidence            998876665544

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00909 2A0306 amino acid transporter

Probab=99.80  E-value=1.4e-18  Score=161.49  Aligned_cols=170  Identities=27%  Similarity=0.358  Sum_probs=142.6

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhC
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG  167 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g  167 (265)
                      +||+++.++.+++.++.++|+|++..++......|+  ..+++|++++++.++.+++++|+++++|++||.|.|++|.+|
T Consensus         1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~--~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G   78 (429)
T TIGR00909         1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP--AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMG   78 (429)
T ss_pred             CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence            589999999999999999999999999887776553  355779999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCC--CCCchHH---------HHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204         168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD--SELPDRA---------VLLLAAACLCVLTAVNCMSVSWAM  236 (265)
Q Consensus       168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~--~~~~~~~---------~~~i~~~~l~~~~~in~~gvk~~~  236 (265)
                      |..|++.+|.+++ .+....+..+..+++++...+ +.  .+.|.+.         ..+..++++++++.+|++|+|..+
T Consensus        79 ~~~g~~~gw~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~  156 (429)
T TIGR00909        79 ELTAFIIGWSLWL-EYGVAVAAVAVGWGGYLQEFL-PGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESG  156 (429)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence            9999999999998 777888888888888876533 21  1112111         113466788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204         237 QVQTLFTVGKLVALFGIIAAGIGYL  261 (265)
Q Consensus       237 ~i~~v~~~~~i~~~~~~ii~g~~~~  261 (265)
                      |+|.+.+.++++.++++++.++.+.
T Consensus       157 ~~~~v~~~~~i~~l~~~~~~~~~~~  181 (429)
T TIGR00909       157 KVNDILVVLKVAALLLFAALGAIHF  181 (429)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhC
Confidence            9999999999999988877776653

>PRK11021 putative transporter; Provisional

Probab=99.79  E-value=2.9e-18  Score=158.77  Aligned_cols=151  Identities=22%  Similarity=0.302  Sum_probs=123.9

Q ss_pred             cchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhH
Q psy9204          92 LVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPA  171 (265)
Q Consensus        92 l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~g  171 (265)
                      +++++..++.++.++|+|+|..|+.++..+|+  ..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+|
T Consensus         1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~--~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g   78 (410)
T PRK11021          1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN--NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG   78 (410)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence            57889999999999999999999999998775  4678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9204         172 FLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVA  249 (265)
Q Consensus       172 f~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~  249 (265)
                      |+.+|.+++ .+............+++.. ..|.   +.+....+..+++++.+.+|++|+|..+|+|.+..++++..
T Consensus        79 f~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i  151 (410)
T PRK11021         79 RVTGWLFLS-VIPVGLPAALQIAAGFGQA-LFGW---SSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL  151 (410)
T ss_pred             HHHHHHHHH-HHHhhHHHHHHHHHHHHHH-HcCC---CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999997 4444444333344456553 3332   22344567777888899999999999999999988655443

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.79  E-value=4.9e-18  Score=157.53  Aligned_cols=166  Identities=31%  Similarity=0.500  Sum_probs=140.8

Q ss_pred             cchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhccccccCCchHHhHHHHhCchh
Q psy9204          92 LVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGELP  170 (265)
Q Consensus        92 l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~  170 (265)
                      +++++..++.++.++|++++..+  .....|.  ..++.|++++++. ++.+++|+|+++++|++||.|.|+++.+||++
T Consensus         1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~--~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~   76 (426)
T PF13520_consen    1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGP--SAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFW   76 (426)
T ss_dssp             B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGC--HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccc
Confidence            57899999999999999988877  3444343  3666778888877 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HH
Q psy9204         171 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL-VA  249 (265)
Q Consensus       171 gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i-~~  249 (265)
                      |++.+|.+++ .+....+..+..+.+++...+.++.+..++...+++++++++.+.+|++|.|..+|++++.+.+++ ..
T Consensus        77 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~  155 (426)
T PF13520_consen   77 GFIVGWLYWV-AYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIP  155 (426)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccceeEE-EeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhh
Confidence            9999999999 777778788888999998766555555567888999999999999999999999999999999999 67


Q ss_pred             HHHHHHHHHHHhh
Q psy9204         250 LFGIIAAGIGYLG  262 (265)
Q Consensus       250 ~~~~ii~g~~~~~  262 (265)
                      ++++++.++....
T Consensus       156 l~~~i~~~~~~~~  168 (426)
T PF13520_consen  156 LLVLIILGIVSFS  168 (426)
T ss_dssp             HHHHHHHHHHSTT
T ss_pred             hhhheeEEEeeec
Confidence            7888888877654

...

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.79  E-value=3e-18  Score=160.34  Aligned_cols=153  Identities=19%  Similarity=0.263  Sum_probs=130.1

Q ss_pred             hhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHH
Q psy9204         100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL  179 (265)
Q Consensus       100 l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~  179 (265)
                      +++|.++|+|+|..++..+..+|+  ..+++|++++++.++.+++++||++++|++||.|.|++|.+||.+||..+|.+|
T Consensus         2 ~~ig~~IGsGif~~~g~~~~~aG~--~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~   79 (446)
T PRK10197          2 LSIAGVIGASLFVGSSVAIAEAGP--AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW   79 (446)
T ss_pred             eeecchhHhHHHHHhHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence            567889999999999999988774  467889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         180 LIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIG  259 (265)
Q Consensus       180 l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~~  259 (265)
                      + .+....+......+.++.. +.|+.     ....++.+++++.+.+|++|+|..+++|.+.+.+|++.++.+++.++.
T Consensus        80 ~-~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~  152 (446)
T PRK10197         80 W-FWVLVIPLEANIAAMILHS-WVPGI-----PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAV  152 (446)
T ss_pred             H-HHHHHHHHHHHHHHHHHHh-ccccC-----cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8 6656666555555555543 33322     245778888899999999999999999999999999999999888876


Q ss_pred             Hh
Q psy9204         260 YL  261 (265)
Q Consensus       260 ~~  261 (265)
                      ..
T Consensus       153 ~~  154 (446)
T PRK10197        153 AI  154 (446)
T ss_pred             Hh
Confidence            44

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.78  E-value=3.4e-18  Score=171.56  Aligned_cols=170  Identities=19%  Similarity=0.292  Sum_probs=146.8

Q ss_pred             ccccccchhhhHHhh-hccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCchHHhHHH
Q psy9204          87 VTGQRLVRLEGVSII-VGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC-ISRSGGDYAYILV  164 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~-i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~-~P~~GG~y~~~~~  164 (265)
                      .-+|+++++..+.+. ++.++|+++|..++.++..+|. +.+++.|+++++++++.++||+|+++. +|++||.|.|++|
T Consensus        73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~-~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr  151 (953)
T TIGR00930        73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGI-GLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR  151 (953)
T ss_pred             CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence            456899999999998 9999999999999999988883 456777999999999999999999998 9999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCC----CCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD----SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQT  240 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~----~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~  240 (265)
                      .+||.+|+..||.+++ ......+..+.++++++...+.+.    ...+.....+++.+++++++++|++|+|..+|+|.
T Consensus       152 alGp~~Gf~iG~~~~l-a~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~  230 (953)
T TIGR00930       152 SLGPEFGGSIGLIFAF-ANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQV  230 (953)
T ss_pred             HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999998 778888999999999998643211    01121224578888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy9204         241 LFTVGKLVALFGIIAAGI  258 (265)
Q Consensus       241 v~~~~~i~~~~~~ii~g~  258 (265)
                      ++++++++.++.+++.++
T Consensus       231 vl~vi~ll~ll~~iig~~  248 (953)
T TIGR00930       231 LFLVIVLLSILNIFVGTI  248 (953)
T ss_pred             HHHHHHHHHHHHHHheee
Confidence            999999999888877654

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.78  E-value=3.4e-18  Score=161.40  Aligned_cols=173  Identities=16%  Similarity=0.157  Sum_probs=136.9

Q ss_pred             ccccccccchhhhHHhhhcccc-ceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCII-GSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  163 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vi-g~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~  163 (265)
                      ++++||+++.++.++++++.+. ..+++...+......|+ ...+++|++++++.++.+++++||++++|++||+|+|++
T Consensus         7 ~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp-~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~   85 (482)
T TIGR00907         7 KPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGA-MSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSA   85 (482)
T ss_pred             cceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            4579999999999999999652 24555555555555454 346778999999999999999999999999999999999


Q ss_pred             HHhC----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCC--CCCchHHHHHHHHHHHHHHHHHHhhhhhH
Q psy9204         164 VAFG----ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPD--SELPDRAVLLLAAACLCVLTAVNCMSVSW  234 (265)
Q Consensus       164 ~~~g----~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~--~~~~~~~~~~i~~~~l~~~~~in~~gvk~  234 (265)
                      |.+|    +..||++||.+++ .+....+......++++...+   .+.  +.+++|...++..+++++++.+|++|+|.
T Consensus        86 ~~~g~~~g~~~~f~~gW~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~  164 (482)
T TIGR00907        86 KLAPPRQMPFASWMTGWFNLA-GQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW  164 (482)
T ss_pred             HhcccccccceeHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence            8876    6789999999998 777777777777777765422   222  33445667778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         235 AMQVQTLFTVGKLVALFGIIAAGIG  259 (265)
Q Consensus       235 ~~~i~~v~~~~~i~~~~~~ii~g~~  259 (265)
                      .++++++..+++++.++++++..+.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~~i~~l~  189 (482)
T TIGR00907       165 LPRITSSAAYWSLLGFLTICITLLA  189 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            9999999999998888766555443

>KOG1289|consensus

Probab=99.77  E-value=2.7e-18  Score=158.81  Aligned_cols=172  Identities=19%  Similarity=0.213  Sum_probs=143.1

Q ss_pred             ccccccccchhhhHHhhhccccc-eeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCIIG-SGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  163 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vig-~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~  163 (265)
                      +|++||++++++.++.+++.+-. .++-.....-+.+ |+++..+++|++++.+.++++++++|++|++|.+||.|.|+.
T Consensus        43 kqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa  121 (550)
T KOG1289|consen   43 KQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAA  121 (550)
T ss_pred             chhhhhhhhHHHHHHHHHHHhcchhhhhhheeecccc-CChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHH
Confidence            47899999999999999887422 1222221121233 334457788999999999999999999999999999999998


Q ss_pred             ----HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204         164 ----VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM  236 (265)
Q Consensus       164 ----~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~  236 (265)
                          ++++|..+|++||...+ ++....++...+.++.+....   .|++.++.++++.+..+++++..++|..+.|..+
T Consensus       122 ~lap~k~~~~~sw~~Gw~~~~-g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~  200 (550)
T KOG1289|consen  122 VLAPPKYGPFASWVTGWLNYL-GQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLA  200 (550)
T ss_pred             HhcCcchhhHHHHHHHHHHHH-HHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHH
Confidence                77899999999999998 888999999999999887543   4777788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy9204         237 QVQTLFTVGKLVALFGIIAAGI  258 (265)
Q Consensus       237 ~i~~v~~~~~i~~~~~~ii~g~  258 (265)
                      |++.+...+.++.+++..|.-.
T Consensus       201 ~I~~~~~~~~ll~~~i~~I~ll  222 (550)
T KOG1289|consen  201 RINSVSVYLNLLFLVILMITLL  222 (550)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999998887766543

>KOG1286|consensus

Probab=99.74  E-value=6.7e-18  Score=160.24  Aligned_cols=169  Identities=20%  Similarity=0.245  Sum_probs=132.1

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCchHHhHHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILV  164 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-~GG~y~~~~~  164 (265)
                      +++||+|+.+++.++++|.++|+|+|+..+.++...|++ ..+++|+++++.+++.++|++|++.++|. +|+.|.|++|
T Consensus        26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~-s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~  104 (554)
T KOG1286|consen   26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPP-SLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYR  104 (554)
T ss_pred             chhhccCCcccEEEEEecceeccceEEeccHHHhccCCh-hHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeee
Confidence            589999999999999999999999999999999886654 46678999999999999999999999999 5999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc-------C-CCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-------F-PDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM  236 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~-------~-~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~  236 (265)
                      ..|+.+||..||.+++ .+....+.++.+.+.++....       . +..+...|..     .++.+...+|+.|+|..+
T Consensus       105 ~i~e~~aF~~gWny~l-~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~-----~fla~~v~in~~gv~~~g  178 (554)
T KOG1286|consen  105 FVGESLAFAIGWNYLL-EYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIP-----DFLAFILIINLFGVLAYG  178 (554)
T ss_pred             eeCcHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHH-----HHHHHHHHHHHHHHhhcc
Confidence            9999999999999999 899999999999999998532       0 2333332333     334445555556655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204         237 QVQTLFTVGKLVALFGIIAAGIGYL  261 (265)
Q Consensus       237 ~i~~v~~~~~i~~~~~~ii~g~~~~  261 (265)
                      ..+......|++..+-+++.+++..
T Consensus       179 e~ef~~~~~kvl~~v~~~Il~iVi~  203 (554)
T KOG1286|consen  179 EVEFSLAFNKILTAVGFIILAIVII  203 (554)
T ss_pred             ceeehHHHHHHHHHHHHHHhheeee
Confidence            5555555555555555555554443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.73  E-value=1.9e-16  Score=148.14  Aligned_cols=173  Identities=29%  Similarity=0.473  Sum_probs=148.3

Q ss_pred             cccccccchhh-hHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204          86 PVTGQRLVRLE-GVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  164 (265)
Q Consensus        86 ~~l~r~l~~~~-~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~  164 (265)
                      ++++|+++.++ ......+.+++.|++..++..+...   +...+.|++++++..+.+++++|+++++|++||.|.|+++
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~---~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~   84 (466)
T COG0531           8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKR   84 (466)
T ss_pred             hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhh
Confidence            46788999999 8888888898888988887776654   2344458999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCC---CCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD---SELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTL  241 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~---~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v  241 (265)
                      .+||+.++.++|.+++ .+....+..+.....++.. +.+.   ...+.+...+++.+++++.+.+|++|+|..++++.+
T Consensus        85 ~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~  162 (466)
T COG0531          85 ALGPRLGFLAGWLYLL-AYVIALAAIAIGAASYLSY-LFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI  162 (466)
T ss_pred             hcCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999 7888888888888887764 4442   222227788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q psy9204         242 FTVGKLVALFGIIAAGIGYLGI  263 (265)
Q Consensus       242 ~~~~~i~~~~~~ii~g~~~~~~  263 (265)
                      ..++++++++++++.++.+...
T Consensus       163 ~~~~~i~~~i~~~i~~~~~~~~  184 (466)
T COG0531         163 ITILKIIILLIFIILGLFAFGF  184 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999998887654

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.65  E-value=8.7e-15  Score=138.78  Aligned_cols=159  Identities=17%  Similarity=0.169  Sum_probs=106.2

Q ss_pred             ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHH-HHHHHHHHHHhcccccc-CCchHHhHHH
Q psy9204          87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLL-STIGALCYAELGTCISR-SGGDYAYILV  164 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~-~~~~a~~~aEl~s~~P~-~GG~y~~~~~  164 (265)
                      +++|+++++++..+.++.+++.+.  .+.. ....|+  ..++.|++++++ .++.+++++||++++|+ +||.|+|+++
T Consensus         4 ~~~~~l~~~~l~~~~~~~vig~~~--~~~~-~~~~G~--~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~   78 (496)
T PRK15238          4 NTKKKLSLIGLILMIFTSVFGFAN--SPRA-FYLMGY--SAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNK   78 (496)
T ss_pred             cccCeeeHHHHHHHHHHHHHhCCc--hHHH-HHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence            357899999999999999988542  2322 333343  244445556655 57899999999999997 8999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHHHHH----HHHHhhhhc-CCCC---C-CchHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIVALT----FAQYAIKPF-FPDS---E-LPDRAVLLLAAACLCVLTAVNCMSVSWA  235 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~~~~----~~~~l~~~~-~~~~---~-~~~~~~~~i~~~~l~~~~~in~~gvk~~  235 (265)
                      .+||+.||+.+|.++. .+.......+..    ....+.... .+..   + .+......++++.+++++++|++|+|..
T Consensus        79 ~~G~~~gf~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~  157 (496)
T PRK15238         79 SVGPKFAFIGTFMWFA-SYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKI  157 (496)
T ss_pred             HcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHH
Confidence            9999999999998776 433332222111    111111100 0000   0 1111223455566668999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy9204         236 MQVQTLFTVGKLVALF  251 (265)
Q Consensus       236 ~~i~~v~~~~~i~~~~  251 (265)
                      .|+|++.+.+++...+
T Consensus       158 ~~i~~~~~~~~~~~~~  173 (496)
T PRK15238        158 AKVTSIGGIAVMLLNI  173 (496)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998888876544

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.64  E-value=7.8e-15  Score=138.34  Aligned_cols=165  Identities=17%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhccccccCCchHHhHHHHhCc
Q psy9204          90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGE  168 (265)
Q Consensus        90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~  168 (265)
                      ||++.+++..+.+..+.+..  ..+..  ...|  ...++.|++++++. ++.+++++||++++|++||.|.|++|.+||
T Consensus         1 ~~~~~~~l~~~~~~~v~~~~--~~~~~--a~~G--~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~   74 (474)
T TIGR03813         1 KKLTVVTLAIMNITAVVSLR--GLPAE--AEYG--LSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGA   74 (474)
T ss_pred             CcccHHHHHHHHHHHHHHhh--cchHH--HHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcCh
Confidence            46889999988877764322  22222  2333  24556688888876 479999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHH---HHhhhh--cCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy9204         169 LPAFLRLWVALLIMRPTTQAIVALTFA---QYAIKP--FFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFT  243 (265)
Q Consensus       169 ~~gf~~gw~~~l~~~~~~~a~~~~~~~---~~l~~~--~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~  243 (265)
                      ++||+.+|.+|+ .+....+......+   .+....  ..+..+.+.+....+.++++++.+.+|++|+|..+|++++..
T Consensus        75 ~~gf~~gw~~w~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~  153 (474)
T TIGR03813        75 RWGFLAIFMLWA-QVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG  153 (474)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            999999999998 44333322211111   122111  112222344555566777778889999999999999999875


Q ss_pred             HH-HHHHHHHHHHHHHHHh
Q psy9204         244 VG-KLVALFGIIAAGIGYL  261 (265)
Q Consensus       244 ~~-~i~~~~~~ii~g~~~~  261 (265)
                      .+ ++++++++++.++...
T Consensus       154 ~~~~ii~~~~~ii~~~~~~  172 (474)
T TIGR03813       154 IVGTIIPAAILVILGISYL  172 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            54 5677777777776654

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.59  E-value=5.2e-14  Score=133.81  Aligned_cols=165  Identities=18%  Similarity=0.263  Sum_probs=114.0

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHH-HHHHHHH-HHHHHHHHHHhccccc-cCCchHHhHHH
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLL-STIGALCYAELGTCIS-RSGGDYAYILV  164 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~-~~i~~l~-~~~~a~~~aEl~s~~P-~~GG~y~~~~~  164 (265)
                      .+||++.++.+.+.++.+.+  ++..|.  ....|   ...+. |++++++ .++.+++++||++++| ++||.|.|+++
T Consensus         2 ~~~~l~~~~~~~~~~~~v~~--~~~~~~--~a~~G---~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~   74 (507)
T TIGR00910         2 KAKKLSLFGFFAITASMVLA--VYEYPT--FATSG---FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSN   74 (507)
T ss_pred             CCcEeeHHHHHHHHHHHHHH--HHhhHH--HHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhh
Confidence            36789999999999887643  233332  12223   34344 5666655 5779999999999997 89999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhhHHHHH---HHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy9204         165 AFGELPAFLRLWVALLIMRPTTQAIV---ALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTL  241 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l~~~~~~~a~~---~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v  241 (265)
                      .+||++||+.+|.+|+ ......+..   ......|+..  .+..+.+.+...++.++++++++++|++|+|..++++++
T Consensus        75 a~G~~~Gf~~~~~~W~-~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i  151 (507)
T TIGR00910        75 TLGERFGFAAIFFGWF-QIAIGFIPMIYFILGALSYILK--FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKA  151 (507)
T ss_pred             ccCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc--CchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            9999999999999998 333222221   2222344331  234444456667777778899999999999999999998


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhh
Q psy9204         242 FTVGKL-VALFGIIAAGIGYLG  262 (265)
Q Consensus       242 ~~~~~i-~~~~~~ii~g~~~~~  262 (265)
                      ..++.+ ++++++++.++....
T Consensus       152 ~~~~~~~i~~~ili~l~~~~~~  173 (507)
T TIGR00910       152 GFFAGILIPAFILFALAAAYFH  173 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            766554 445555555555443

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.53  E-value=6.5e-15  Score=138.96  Aligned_cols=156  Identities=25%  Similarity=0.394  Sum_probs=129.1

Q ss_pred             HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHH
Q psy9204          98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWV  177 (265)
Q Consensus        98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~  177 (265)
                      .+++++.++|.|.+...+.....+|+.+ .++++++++++.++.+.+++|+++++|++||.|.|++|.+||..|+..||.
T Consensus         3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~-~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~   81 (478)
T PF00324_consen    3 FMISIGGIIGTGLFLGSGFAIAAAGPGG-APLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA   81 (478)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHhccccc-chhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence            4567888889999999888888776533 467789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhhhc--CCCCCCchHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9204         178 ALLIMRPTTQAIVALTFAQYAIKPF--FPDSELPDRAV-LLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGII  254 (265)
Q Consensus       178 ~~l~~~~~~~a~~~~~~~~~l~~~~--~~~~~~~~~~~-~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~i  254 (265)
                      +++ .+....+......+.++.. .  .++.+. .+.. .+++.+++++++.+|++|+|..+|++.++..+|++.++.++
T Consensus        82 y~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~i  158 (478)
T PF00324_consen   82 YWL-SYIAAIAAEATAAGSFLQF-WGYFPGLPS-TWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFI  158 (478)
T ss_pred             HHH-HHHHHHHhhhhhhhhhhcc-ccccccccc-cccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence            999 7777777777777666553 3  233221 1111 14577788889999999999999999999999999999999


Q ss_pred             HHH
Q psy9204         255 AAG  257 (265)
Q Consensus       255 i~g  257 (265)
                      +.+
T Consensus       159 i~~  161 (478)
T PF00324_consen  159 IVG  161 (478)
T ss_pred             hhc
Confidence            888

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.51  E-value=1.6e-13  Score=125.82  Aligned_cols=160  Identities=11%  Similarity=0.054  Sum_probs=121.3

Q ss_pred             HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHH
Q psy9204          98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWV  177 (265)
Q Consensus        98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~  177 (265)
                      ..+.+++++|+|++.+|...... |.. ..++..+++++++.+.+++++|+++++|+++|.|.|.++.+||+.+++.+|.
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~-g~~-~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~   80 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGA-WFI-WTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLS   80 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhh-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHH
Confidence            45677889999999999886654 322 3334457788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         178 ALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG  257 (265)
Q Consensus       178 ~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g  257 (265)
                      +++ .............++++... ++....+.+...+..+++.+++..+|++|+|..+|+|.+.+..+++.++++++.+
T Consensus        81 ~~~-~~~~~~~ay~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~  158 (381)
T TIGR00837        81 LLF-VLYILTYAYISGGGSILSRL-IGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGL  158 (381)
T ss_pred             HHH-HHHHHHHHHHHccHHHHHHH-HHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988 34344444444444554432 2211111122345667777888899999999999999999999999999888887


Q ss_pred             HHHh
Q psy9204         258 IGYL  261 (265)
Q Consensus       258 ~~~~  261 (265)
                      +.+.
T Consensus       159 ~~~~  162 (381)
T TIGR00837       159 LPHV  162 (381)
T ss_pred             Hhhc
Confidence            7654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=99.49  E-value=8.2e-13  Score=120.20  Aligned_cols=152  Identities=13%  Similarity=0.161  Sum_probs=130.1

Q ss_pred             cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCch
Q psy9204          90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGEL  169 (265)
Q Consensus        90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~  169 (265)
                      ++++.++...+.++.++|+|++..|+.....++..  ++++++++++..++.+.+++|+++++|+. +.+.|.++.+||+
T Consensus         1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~--~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~   77 (359)
T TIGR00912         1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD--GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI   77 (359)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC--eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence            36889999999999999999999999988876642  45677999999999999999999999987 5999999999999


Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9204         170 PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVA  249 (265)
Q Consensus       170 ~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~  249 (265)
                      .|++.+|.+++ +.....+.....+++++.....|+.  |   .+.+...+++++..++..|+|..+|++.+...+++..
T Consensus        78 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~t--p---~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~  151 (359)
T TIGR00912        78 LGRLLSILFIL-YFFLIAAYLIRIFADFIKTYLLPRT--P---IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL  151 (359)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC--C---HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence            99999999888 7777777888888888876555543  2   4566777788889999999999999999999998877


Q ss_pred             H
Q psy9204         250 L  250 (265)
Q Consensus       250 ~  250 (265)
                      .
T Consensus       152 ~  152 (359)
T TIGR00912       152 F  152 (359)
T ss_pred             H
Confidence            3

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PHA02764 hypothetical protein; Provisional

Probab=99.33  E-value=2.3e-11  Score=105.95  Aligned_cols=95  Identities=19%  Similarity=0.037  Sum_probs=75.2

Q ss_pred             ccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  164 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~  164 (265)
                      ...+-|+.+.++++...++.+........+ .......+....+.+|+++++++++.++||+|+++++|++||.|.|.+|
T Consensus         7 SSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~-~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISR   85 (399)
T PHA02764          7 SSGIIKSFNILDIFSINLLYMGILSGISYP-LFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRT   85 (399)
T ss_pred             cCCceeeccHHHHHHHHHHhhccchhHHHH-HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHH
Confidence            357899999999999888775322111111 1122223334566789999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHH
Q psy9204         165 AFGELPAFLRLWVALL  180 (265)
Q Consensus       165 ~~g~~~gf~~gw~~~l  180 (265)
                      ++||..|++.||..|+
T Consensus        86 AFGP~~GFLvG~a~WL  101 (399)
T PHA02764         86 AFSSKFYTIFGISLWL  101 (399)
T ss_pred             hhCccHHHHHHHHHHH
Confidence            9999999999999998

>KOG1287|consensus

Probab=99.20  E-value=3.5e-10  Score=104.84  Aligned_cols=54  Identities=46%  Similarity=1.053  Sum_probs=47.9

Q ss_pred             eecCCCCCCCCC-cCCC-CChhHHHHHHHhhhhccCCcccchhhhccccCCCCCCcc
Q psy9204          32 LYSEGSSNFDHA-WDGN-YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLP   86 (265)
Q Consensus        32 ~~~~~~~~f~~~-f~~~-~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~~~~~   86 (265)
                      +.+++++|+++. |+++ ++.+.+.+|+|+++|+|+|||++|+++||+|||+| +.|
T Consensus       183 ~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k-tLP  238 (479)
T KOG1287|consen  183 LFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR-TLP  238 (479)
T ss_pred             eEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccc-cch
Confidence            446888998877 8884 88999999999999999999999999999999999 444

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=98.99  E-value=2.4e-08  Score=91.42  Aligned_cols=150  Identities=15%  Similarity=0.222  Sum_probs=118.6

Q ss_pred             hccccceeeecchHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHHH
Q psy9204         102 VGCIIGSGIFVSPAGVLAETQSV-GLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALL  180 (265)
Q Consensus       102 i~~vig~gi~~~~~~~~~~~g~~-~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~l  180 (265)
                      ++.-.|+|.+..|..+...+|+. ..+.++|++.++...+.+++      +.|++||.|++..+++||+.|++.+|..++
T Consensus         5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l   78 (378)
T TIGR00796         5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYL   78 (378)
T ss_pred             HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHH
Confidence            34456788899999999998875 67778899999988888877      888999999999999999999999999887


Q ss_pred             HHHhhH----HHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         181 IMRPTT----QAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA  256 (265)
Q Consensus       181 ~~~~~~----~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~  256 (265)
                      +..+..    ++..++.++  +. .++|... +.....+..+++..+..++|+++.|...+++++++..+++.++.+++.
T Consensus        79 ~iGP~~aiPRtaa~s~e~~--i~-p~~~~~~-~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~  154 (378)
T TIGR00796        79 TIGPLFAIPRTATVSFEMG--IA-PLLHSPT-SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIK  154 (378)
T ss_pred             HHHhchhhhHHHHHHHHHH--HH-hccCccc-chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHH
Confidence            544554    555555544  33 3444311 223345566777777788999999999999999999999999999999


Q ss_pred             HHHHh
Q psy9204         257 GIGYL  261 (265)
Q Consensus       257 g~~~~  261 (265)
                      |+...
T Consensus       155 g~~~p  159 (378)
T TIGR00796       155 ALLWP  159 (378)
T ss_pred             HHHcC
Confidence            99764

transmembrane helical spanners.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.90  E-value=9.4e-08  Score=85.77  Aligned_cols=157  Identities=16%  Similarity=0.163  Sum_probs=133.3

Q ss_pred             ccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchh
Q psy9204          91 RLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP  170 (265)
Q Consensus        91 ~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~  170 (265)
                      |++.+|...+.+...++.+....|......+++   ++++-+++++..+...+.+..+++++|+.. ...+.++.+||+.
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d---~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~l   76 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGD---AWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWL   76 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHH
Confidence            567888999999999999999999998888753   234448889999999999999999999977 8999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy9204         171 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVAL  250 (265)
Q Consensus       171 gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~  250 (265)
                      |.+.+..+.+ ++....+.....+.+.+...++|+.+     .+.+...+++++.+....|.+..+|.+.+...+.++.+
T Consensus        77 g~ii~~~~~l-~~l~~~~~~lr~~~~~i~~~~lp~TP-----~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~  150 (320)
T PF03845_consen   77 GKIINLLYIL-YFLLISALVLREFSEFIKTYLLPETP-----IWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILL  150 (320)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999998888 78888899999999999987777643     45777888899999999999999998888888887776


Q ss_pred             HHHHHHH
Q psy9204         251 FGIIAAG  257 (265)
Q Consensus       251 ~~~ii~g  257 (265)
                      +.+.+..
T Consensus       151 ~~i~~~~  157 (320)
T PF03845_consen  151 LLILLLS  157 (320)
T ss_pred             HHHHHHh
Confidence            6665443

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00814 stp serine transporter

Probab=98.84  E-value=1.3e-07  Score=87.25  Aligned_cols=157  Identities=11%  Similarity=0.056  Sum_probs=106.7

Q ss_pred             HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHH----HHHHhcccccc-CCchHHhHHHHhCchhHH
Q psy9204          98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CYAELGTCISR-SGGDYAYILVAFGELPAF  172 (265)
Q Consensus        98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~----~~aEl~s~~P~-~GG~y~~~~~~~g~~~gf  172 (265)
                      ....+++++|+|++.+|... +. +    .++.++++.++..+..+    .+.|.....|. ..+.+.++++.+||..|.
T Consensus         9 ~~~l~gt~IGaGiL~LP~~a-g~-~----G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~   82 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQA-GL-G----GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGI   82 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-Hh-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHH
Confidence            45567788999999999762 21 1    23344555555555444    44555444444 667999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy9204         173 LRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFG  252 (265)
Q Consensus       173 ~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~  252 (265)
                      +.++.|++ .........+....+.+.+.+......+.....+.+.+++++...++..|.|...|++.++...+++.+++
T Consensus        83 ii~~lY~~-~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~  161 (397)
T TIGR00814        83 LITLLYFF-AIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVL  161 (397)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 55555455554444444332211111111123466777777779999999999999999999999998888


Q ss_pred             HHHHHHHHh
Q psy9204         253 IIAAGIGYL  261 (265)
Q Consensus       253 ~ii~g~~~~  261 (265)
                      +.+..+.+.
T Consensus       162 l~~~lip~~  170 (397)
T TIGR00814       162 LSLYLIPHW  170 (397)
T ss_pred             HHHHHHHHc
Confidence            888777654

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.80  E-value=1.8e-07  Score=86.35  Aligned_cols=168  Identities=12%  Similarity=0.077  Sum_probs=125.2

Q ss_pred             ccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchh
Q psy9204          91 RLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP  170 (265)
Q Consensus        91 ~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~  170 (265)
                      +-+.+...++..|+.+|.|+..+|-.... .| ..+..+..+++..++...++.++|...+.|+..+.-..+++.+||..
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~G-f~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g   79 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAG-AG-FLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG   79 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHh-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence            44567788999999999999999866433 24 23344445777778888999999999999998889999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy9204         171 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVAL  250 (265)
Q Consensus       171 gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~  250 (265)
                      +++.+..+.+. ......+.....++.+.+.+ +......+.......++.++...+-+.|.|...|++.++...+++.+
T Consensus        80 ~~~~~~~~~~~-~y~ll~AYisg~g~~~~~~l-~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~  157 (394)
T PF03222_consen   80 GIVIGISYLFL-LYALLVAYISGGGSILSSLL-GNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISF  157 (394)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHccHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999988883 33444455555555555432 21111112234556666677777888999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy9204         251 FGIIAAGIGYLG  262 (265)
Q Consensus       251 ~~~ii~g~~~~~  262 (265)
                      +.+++.++.+..
T Consensus       158 ~~l~~~~~p~~~  169 (394)
T PF03222_consen  158 IILVVYLIPHWN  169 (394)
T ss_pred             HHHHHHHhhhcC
Confidence            999988877653

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=98.62  E-value=1.8e-06  Score=79.85  Aligned_cols=169  Identities=14%  Similarity=0.074  Sum_probs=124.2

Q ss_pred             ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204          87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      ..|++.+......+..|+.+|.|.+.+|...... | ..++.+..++..+++...++.+.|.+.++|+.-+.-..+++.+
T Consensus         6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~-G-F~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~L   83 (414)
T PRK10483          6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGA-W-FFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLL   83 (414)
T ss_pred             cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence            4567889999999999999999999998654332 4 2344555677888899999999999999998888899999999


Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC-CCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP-DSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~-~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      ||....+.+..+.+..+ ....++....++.+.+.+.. +.+.|   ...-.+++.++...+.+.|.|...|+|.++...
T Consensus        84 G~~g~~i~~~s~lfl~Y-~Ll~AYisg~g~il~~~l~~~~~~i~---~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~  159 (414)
T PRK10483         84 GKGWNVVNGISIAFVLY-ILTYAYISASGSILHHTFAEMSLNVP---ARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGA  159 (414)
T ss_pred             ChHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99877666655555333 33334444455555543311 12223   346677777888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      +++.+++.+...+.++
T Consensus       160 ~i~~f~~~~~~l~~~i  175 (414)
T PRK10483        160 KVITFFLTFGSLLGHV  175 (414)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9998887776655443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.49  E-value=5.1e-06  Score=76.86  Aligned_cols=163  Identities=12%  Similarity=0.058  Sum_probs=117.8

Q ss_pred             chhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHH
Q psy9204          93 VRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF  172 (265)
Q Consensus        93 ~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf  172 (265)
                      +......+..|+.+|.|.+.+|...... | ..++.+..++..+++...++.+.|.+.++|..-+.-..+++.+||..-.
T Consensus        10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~-G-f~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~   87 (415)
T PRK09664         10 SAFWGVMVIAGTVIGGGMFALPVDLAGA-W-FFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI   87 (415)
T ss_pred             chhhhhHHhhhccHhHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence            5666788999999999999998554332 4 2344455677888899999999999999998888999999999998666


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC--CCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy9204         173 LRLWVALLIMRPTTQAIVALTFAQYAIKPFFP--DSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVAL  250 (265)
Q Consensus       173 ~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~--~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~  250 (265)
                      +.+..+.+..+ ....++....++.+.+.+..  +.+.+   ....++++.++...+-+.|.|...|+|.++...+++.+
T Consensus        88 i~~~~~~fl~Y-~Ll~AYisggG~il~~~l~~~~~~~i~---~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f  163 (415)
T PRK09664         88 ISGITVAFVLY-ILTYAYISANGAIISETISMNLGYHAN---PRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISF  163 (415)
T ss_pred             HHHHHHHHHHH-HHHHHHHhccHHHHHHHHhhhccCCCc---HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence            66665555233 33334444444555543311  12222   23456778888889999999999999999999999998


Q ss_pred             HHHHHHHHHHh
Q psy9204         251 FGIIAAGIGYL  261 (265)
Q Consensus       251 ~~~ii~g~~~~  261 (265)
                      ++.+...+.++
T Consensus       164 ~~~~~~l~~~i  174 (415)
T PRK09664        164 VIVFGSFFFQV  174 (415)
T ss_pred             HHHHHHHhhcc
Confidence            87777665443

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=98.43  E-value=1.2e-05  Score=74.86  Aligned_cols=170  Identities=14%  Similarity=0.091  Sum_probs=129.5

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCC-chHHhHHHHh
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSG-GDYAYILVAF  166 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~G-G~y~~~~~~~  166 (265)
                      .+++-+....+....++.+|+|+...|-. ....| ..+.+...++++.++.+...++.|...+.|+.. +...-+++.+
T Consensus         5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G-~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~   82 (415)
T COG0814           5 MKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGG-FWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL   82 (415)
T ss_pred             ccCCcchHHHHHHHHccccccchhhhhHH-hcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence            45566667788889999999999999854 33323 334445567888899999999999999999984 8999999999


Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204         167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK  246 (265)
Q Consensus       167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~  246 (265)
                      ||.++++.+..+.+ .......+.....++.+.+.+......+.+...+..+++..+...+.+.|.+..-|.+..+...+
T Consensus        83 G~~~~~li~~s~~~-~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~  161 (415)
T COG0814          83 GKKGGILIGLSYFF-ALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK  161 (415)
T ss_pred             CcchHHHHHHHHHH-HHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            99999999999888 55555666666666666643321111111345667777777777899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy9204         247 LVALFGIIAAGIGY  260 (265)
Q Consensus       247 i~~~~~~ii~g~~~  260 (265)
                      ++.++++.+.-+.+
T Consensus       162 v~~~~~l~~~~~~~  175 (415)
T COG0814         162 VIYLVLLVVYLIPH  175 (415)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99998888776654

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.42  E-value=8.6e-06  Score=75.36  Aligned_cols=162  Identities=14%  Similarity=0.140  Sum_probs=113.8

Q ss_pred             chhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHH
Q psy9204          93 VRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF  172 (265)
Q Consensus        93 ~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf  172 (265)
                      +.....++..|+.+|.|...+|-.... .| ..++++..+++..++...++.++|.+.+.|...+.-..+++.+||..++
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~G-f~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~   81 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VG-FSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW   81 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence            455678889999999999999866443 24 2334444466666688888889999899888778899999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9204         173 LRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVA  249 (265)
Q Consensus       173 ~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~  249 (265)
                      +....+.+..+ ....++....++.+.+.+   .+ .+.+.   ....+.+.++...+-+.|.|...|++.++...+++.
T Consensus        82 i~~~~y~fl~y-~ll~AYisg~g~il~~~l~~~~~-~~i~~---~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~  156 (403)
T PRK15132         82 LTGFSMMFLMY-ALTAAYISGAGELLASSISDWTG-ISMSP---TAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIF  156 (403)
T ss_pred             HHHHHHHHHHH-HHHHHHHhCcHHHHHHHHHHhcc-CCCCh---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            99999888333 344444444334433322   21 12222   234444555556688889999999999999999988


Q ss_pred             HHHHHHHHHHHh
Q psy9204         250 LFGIIAAGIGYL  261 (265)
Q Consensus       250 ~~~~ii~g~~~~  261 (265)
                      ++.+++..+.+.
T Consensus       157 ~~~~~~~l~p~~  168 (403)
T PRK15132        157 LVVMLALMMPHI  168 (403)
T ss_pred             HHHHHHHHHHhc
Confidence            877766655543

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.42  E-value=1.8e-05  Score=73.50  Aligned_cols=161  Identities=14%  Similarity=0.088  Sum_probs=116.5

Q ss_pred             HHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCchHHhHHHHhCchhHHHHHH
Q psy9204          98 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCI-SRSGGDYAYILVAFGELPAFLRLW  176 (265)
Q Consensus        98 ~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~-P~~GG~y~~~~~~~g~~~gf~~gw  176 (265)
                      .....|+.+|+|+..+|-.... .| ..+.++..+++..++......+.|..... |+..+.-..+++.+||..+.+.+.
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~-~G-f~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i  102 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGF-GG-LIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF  102 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhc-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence            3556788999999999865332 23 33444445777778888889999999988 555667788889999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         177 VALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA  256 (265)
Q Consensus       177 ~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~  256 (265)
                      .|.+..++... +......+.+.+.+....+.+.....+.+++++.+...+-..|.|...|++.++...+++.++++.+.
T Consensus       103 lYff~ly~ll~-aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~  181 (443)
T PRK13629        103 LYFFAICPLLW-IYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS  181 (443)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99884333333 33344444444321111111111356788889999999999999999999999999999999998887


Q ss_pred             HHHHh
Q psy9204         257 GIGYL  261 (265)
Q Consensus       257 g~~~~  261 (265)
                      .+.+.
T Consensus       182 LiP~w  186 (443)
T PRK13629        182 LIPYW  186 (443)
T ss_pred             HHHHc
Confidence            77665

>KOG2083|consensus

Probab=98.04  E-value=1.9e-05  Score=74.69  Aligned_cols=165  Identities=18%  Similarity=0.219  Sum_probs=123.1

Q ss_pred             ccccchhhhHHhhh-ccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCchHHhHHHHh
Q psy9204          89 GQRLVRLEGVSIIV-GCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAF  166 (265)
Q Consensus        89 ~r~l~~~~~~~l~i-~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P-~~GG~y~~~~~~~  166 (265)
                      +-++++++-+.... -.+.|...|.-.+-+.+.+| .+..++...++.++.++.+++...++++-. +.||.|..++|.+
T Consensus        27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqag-i~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl  105 (643)
T KOG2083|consen   27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAG-IGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL  105 (643)
T ss_pred             ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecch-hhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence            44678887665532 22445555555555555555 233333345677778888888888888776 5899999999999


Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204         167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK  246 (265)
Q Consensus       167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~  246 (265)
                      ||..|-..|-+|.+ ...+.++....++++-+...+. ..  ..+...-++.+.+++...+|..|+|+..|+|.++..+.
T Consensus       106 g~efggsigiIy~f-~~aVa~am~~vgfaEsv~~l~~-~~--s~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il  181 (643)
T KOG2083|consen  106 GPEFGGSIGIIYAF-ANAVATAMYVVGFAESVAHLFE-TE--SKEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLIL  181 (643)
T ss_pred             cccccchhHHHHHH-HHHHHHHHhhhhHHHHHHHHHH-hc--cHHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence            99999999999999 7888899999999999887542 22  23344458888889999999999999999999999888


Q ss_pred             HHHHHHHHHHHH
Q psy9204         247 LVALFGIIAAGI  258 (265)
Q Consensus       247 i~~~~~~ii~g~  258 (265)
                      ++.+.-+++..+
T Consensus       182 ~iai~~f~~gs~  193 (643)
T KOG2083|consen  182 LIAIADFLVGSF  193 (643)
T ss_pred             HHHHHHhhhhhc
Confidence            887776665544

>KOG2082|consensus

Probab=97.91  E-value=8.8e-05  Score=71.80  Aligned_cols=152  Identities=17%  Similarity=0.248  Sum_probs=103.9

Q ss_pred             ccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCchHHhHHHHhCchhHHHHHHHHHHHHH
Q psy9204         105 IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGELPAFLRLWVALLIMR  183 (265)
Q Consensus       105 vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P-~~GG~y~~~~~~~g~~~gf~~gw~~~l~~~  183 (265)
                      +.|+-.|.-..-+...+|- +-....-++++.+.++.+.+++.+++.=- .+||.|.+++|.+||-.|-.+|.+..+ +.
T Consensus       128 IlGVilFiRLtWvVG~AGv-~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYL-gt  205 (1075)
T KOG2082|consen  128 ILGVILFIRLTWVVGMAGV-GQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYL-GT  205 (1075)
T ss_pred             HHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhh-hh
Confidence            3333334443344444442 12222236777778888999988887543 478899999999999999999988877 66


Q ss_pred             hhHHHHHHHHHHHHhhhhcCCCC--------CCc----hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy9204         184 PTTQAIVALTFAQYAIKPFFPDS--------ELP----DRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALF  251 (265)
Q Consensus       184 ~~~~a~~~~~~~~~l~~~~~~~~--------~~~----~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~  251 (265)
                      ....+.......+.+...++|..        ..+    .....+-+.+++++..++...|+|...++..++....++.++
T Consensus       206 T~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIl  285 (1075)
T KOG2082|consen  206 TVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSIL  285 (1075)
T ss_pred             HHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            66666777777777665444321        000    112456778888899999999999999999888887777776


Q ss_pred             HHHHHHH
Q psy9204         252 GIIAAGI  258 (265)
Q Consensus       252 ~~ii~g~  258 (265)
                      .+.+-++
T Consensus       286 aiyaG~i  292 (1075)
T KOG2082|consen  286 AIYAGGI  292 (1075)
T ss_pred             HHHHhhh
Confidence            6655444

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=97.82  E-value=0.002  Score=59.76  Aligned_cols=161  Identities=12%  Similarity=0.078  Sum_probs=98.4

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-------CCchHH
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGDYA  160 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-------~GG~y~  160 (265)
                      -++.++.++++..+.+..+|+|-......... .|+||...+.|+.+. +.+...++=.-|+.+|.+       .||...
T Consensus        15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~-~GGPGAiFWMWi~a~-~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y   92 (416)
T PF01235_consen   15 EEGGISPFQALCTALAGTVGTGNIAGVATAIA-IGGPGAIFWMWISAL-LGMATKYAEVTLAQKYREKDEDGEYRGGPMY   92 (416)
T ss_pred             CCCCcChHHHHHHHHHhccCcchHHHHHHHHH-hhchhHHHHHHHHHH-HHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence            34579999999999999988886555544443 466777777777654 333333333334444432       488999


Q ss_pred             hHHHHhCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy9204         161 YILVAFGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQ  239 (265)
Q Consensus       161 ~~~~~~g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~  239 (265)
                      |.+|.++.+ ++.+.+-..............+-+.++-+..    ..+.|   .+..++++.++..++-.-|+|..+++.
T Consensus        93 yi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~----~f~i~---~~~~gi~l~~l~~~vi~GGikrI~~v~  165 (416)
T PF01235_consen   93 YIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSS----AFGIP---PWITGIILAILVALVIFGGIKRIAKVS  165 (416)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hcccc---HHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence            999998865 3333332211101111112222222333322    22233   345677777778888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy9204         240 TLFTVGKLVALFGIIAAG  257 (265)
Q Consensus       240 ~v~~~~~i~~~~~~ii~g  257 (265)
                      ..+..++.+..++..+.-
T Consensus       166 ~~lVP~Ma~~Yi~~~l~i  183 (416)
T PF01235_consen  166 EKLVPFMAILYILGGLII  183 (416)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988777665443

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>TIGR00835 agcS amino acid carrier protein

Probab=97.76  E-value=0.0012  Score=61.53  Aligned_cols=155  Identities=13%  Similarity=0.135  Sum_probs=97.5

Q ss_pred             cccchhhhHHhhhcccccee-eecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc---c----CCchHHh
Q psy9204          90 QRLVRLEGVSIIVGCIIGSG-IFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS---R----SGGDYAY  161 (265)
Q Consensus        90 r~l~~~~~~~l~i~~vig~g-i~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P---~----~GG~y~~  161 (265)
                      ++++.++++..+.+..+|+| +...+.. ... |+++...+.|+.+. +.....++-.-++.++.   +    .||...|
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~-GGpGAvFWMWI~al-lGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yy  121 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAI-GGPGAVFWMWVTAF-IGMATKFVESTLAQKYRERDADGVFRGGPMYY  121 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHh-cCCCchHHHHHHHH-HHHHHHHHHHHHHHHeeeeCCCCCEecChHHH
Confidence            46999999999999999997 6555555 444 44666666666543 33333333333333333   2    2455578


Q ss_pred             HHHHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy9204         162 ILVAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQT  240 (265)
Q Consensus       162 ~~~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~  240 (265)
                      .++.++ |++|.+.+.. .+.+............++.+...+    +.|   .+.+.+++.++..++-.-|+|..+|+..
T Consensus       122 i~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~----~~~---~~v~~i~l~~l~~~vi~GGik~Ia~v~~  193 (425)
T TIGR00835       122 IKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF----NVP---KLVTGIVLTVLTALIIFGGLKRIAKISS  193 (425)
T ss_pred             HHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc----CCc---HHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            887765 7777776655 331323334555566666665322    223   3456666666666676679999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9204         241 LFTVGKLVALFGIIA  255 (265)
Q Consensus       241 v~~~~~i~~~~~~ii  255 (265)
                      .+..+..+..++..+
T Consensus       194 ~lvP~m~~~Y~~~~l  208 (425)
T TIGR00835       194 VVVPFMALLYVIMAL  208 (425)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998887755443

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=97.59  E-value=0.0065  Score=56.30  Aligned_cols=160  Identities=13%  Similarity=0.125  Sum_probs=105.9

Q ss_pred             ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcccccc-------CCchH
Q psy9204          87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGDY  159 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~-------~GG~y  159 (265)
                      +-++.++.++++..+.+.-+|+|=...... +...|+||...+.|+.+. +-+...++=+-|+..|.+       .||+-
T Consensus        58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~Al-~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~  135 (452)
T COG1115          58 AGKGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIVAL-FGMATKFAESTLAQKYRVKDKDGEYRGGPA  135 (452)
T ss_pred             CCCCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHHHH-HHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence            356789999999999999888875554433 334477777777888765 333344443446666652       48889


Q ss_pred             HhHHHHhC-chhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy9204         160 AYILVAFG-ELPAFLRLWVALLIMRP-TTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQ  237 (265)
Q Consensus       160 ~~~~~~~g-~~~gf~~gw~~~l~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~  237 (265)
                      .|.++.+| |++|-+.+....+ .+. ......+-+.++.+...+    +.|   .+...+++.++..++-..|+|..+|
T Consensus       136 yYi~kGl~~r~l~v~FA~~li~-afg~i~n~vQ~NsIa~a~~~af----~~~---~~~~gi~la~l~~~VI~GGi~rIa~  207 (452)
T COG1115         136 YYIEKGLGMRWLAVLFAFALIA-AFGFIGNGVQSNSIASALANAF----GIP---PLVTGIVLALLVALVIFGGIKRIAK  207 (452)
T ss_pred             HHHHhhcCCcHHHHHHHHHHHH-HHHhhcchhhHHHHHHHHHHhc----CCc---HHHHHHHHHHHHHHHHHcchHHHHH
Confidence            99999988 4566666533222 222 234444555555555432    223   4577778888888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy9204         238 VQTLFTVGKLVALFGIIAA  256 (265)
Q Consensus       238 i~~v~~~~~i~~~~~~ii~  256 (265)
                      +......+.-+..++..+.
T Consensus       208 v~~~vVPfMA~~Yi~~~~~  226 (452)
T COG1115         208 VSSKVVPFMAILYVLVALV  226 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999888887766655443

>KOG1288|consensus

Probab=97.44  E-value=0.00024  Score=68.28  Aligned_cols=162  Identities=15%  Similarity=0.094  Sum_probs=112.2

Q ss_pred             ccchhhhHHhhhcc-ccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCchHHhHHHHhCc
Q psy9204          91 RLVRLEGVSIIVGC-IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGE  168 (265)
Q Consensus        91 ~l~~~~~~~l~i~~-vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P-~~GG~y~~~~~~~g~  168 (265)
                      +|+.++-+.....- |...-.|.-.+.+...+|- -..+.-.+++-.+.++..++...+++.=- +.||.|.+++|.+||
T Consensus        66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGl-l~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp  144 (945)
T KOG1288|consen   66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGL-LKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP  144 (945)
T ss_pred             cccceeeEechhHHHHHHHHHHHHHhhhhcchHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence            56665544332222 2222334444555555441 11222245555556666777777776554 478899999999999


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCC---------CCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy9204         169 LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP---------DSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQ  239 (265)
Q Consensus       169 ~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~---------~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~  239 (265)
                      ..|-..|-+..+ +.+..++.+...+.+-+...+.+         ..+...|+..+.+..++.++..+.+.|....+|..
T Consensus       145 EfGGSIGllFf~-anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas  223 (945)
T KOG1288|consen  145 EFGGSIGLLFFV-ANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKAS  223 (945)
T ss_pred             ccCCeeeehhhH-HHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence            999999988888 88899999999999988865542         23445789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9204         240 TLFTVGKLVALFGII  254 (265)
Q Consensus       240 ~v~~~~~i~~~~~~i  254 (265)
                      ++..++..+.+..+.
T Consensus       224 ~i~f~~is~s~~si~  238 (945)
T KOG1288|consen  224 NILFVVISVSLFSIP  238 (945)
T ss_pred             hhhhhHHHHHHhhhh
Confidence            887776655554443

>PRK10655 potE putrescine transporter; Provisional

Probab=97.44  E-value=0.014  Score=54.60  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..++..++..+.|+|.||+...++.||.|||+|
T Consensus       188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r  220 (438)
T PRK10655        188 FSAVGSSIAMTLWAFLGLESACANSDAVENPER  220 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc
Confidence            467788899999999999999999999999998

>PRK11021 putative transporter; Provisional

Probab=97.26  E-value=0.062  Score=49.78  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ++.++..++..+.|+|.||+....+.||.|||+|
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k  208 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER  208 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc
Confidence            5677888999999999999999999999999998

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.04  E-value=0.044  Score=51.39  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ....+..++..+.|+|.||+....+.||.|||+|
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r  222 (445)
T PRK10644        189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR  222 (445)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc
Confidence            3556777899999999999999999999999998

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.02  E-value=0.055  Score=50.61  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +..++..++..+.|+|.||+......||.|||+|
T Consensus       185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r  218 (435)
T PRK10435        185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR  218 (435)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc
Confidence            4668888999999999999999999999999998

>PRK11375 allantoin permease; Provisional

Probab=96.77  E-value=0.16  Score=48.45  Aligned_cols=173  Identities=8%  Similarity=-0.034  Sum_probs=87.2

Q ss_pred             CccccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhH
Q psy9204          84 VLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI  162 (265)
Q Consensus        84 ~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~  162 (265)
                      |.|+-+|+-++++...+=++.......+...+..+. .| +...++++-+++.++..+.....+..+.++..  +.....
T Consensus        19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~s   95 (484)
T PRK11375         19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMIL   95 (484)
T ss_pred             cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhH
Confidence            446667888888877776655443333222222222 22 22333333333333333333333333333221  245677


Q ss_pred             HHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hcCCCCC---C-----c-hHHHHHHHHHHHHHHHHHHhh
Q psy9204         163 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK---PFFPDSE---L-----P-DRAVLLLAAACLCVLTAVNCM  230 (265)
Q Consensus       163 ~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~---~~~~~~~---~-----~-~~~~~~i~~~~l~~~~~in~~  230 (265)
                      |..||.+-+.+.+....+.......+......++.+..   .+.|...   +     + +....+..+++.++.+.+.++
T Consensus        96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~  175 (484)
T PRK11375         96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFG  175 (484)
T ss_pred             HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence            78888775565555553112233444444444444331   2222111   0     0 112233344555666677789


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         231 SVSWAMQVQTLFTVGKLVALFGIIAAGIG  259 (265)
Q Consensus       231 gvk~~~~i~~v~~~~~i~~~~~~ii~g~~  259 (265)
                      |.|...|++.+...+.++..+...+..+.
T Consensus       176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~  204 (484)
T PRK11375        176 GGKVLNKFTAILNPCIYIVFGGMAIWAIS  204 (484)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888887766655544443

>TIGR00911 2A0308 L-type amino acid transporter

Probab=96.75  E-value=0.14  Score=48.76  Aligned_cols=35  Identities=54%  Similarity=1.162  Sum_probs=31.9

Q ss_pred             CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      .+..++..++..+.|+|.||+....+.||.|||+|
T Consensus       232 ~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r  266 (501)
T TIGR00911       232 TSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR  266 (501)
T ss_pred             CcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence            34667888999999999999999999999999998

>PRK10249 phenylalanine transporter; Provisional

Probab=96.66  E-value=0.19  Score=47.36  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=31.6

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      .+.++..++..+.|+|.||+......||.|||+|
T Consensus       207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k  240 (458)
T PRK10249        207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPEK  240 (458)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh
Confidence            4667888999999999999999999999999998

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=96.62  E-value=0.11  Score=49.22  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +.++..++..+.|+|.||+....+.||.|||+|
T Consensus       210 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r  242 (469)
T PRK11049        210 LSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK  242 (469)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh
Confidence            556888999999999999999999999999998

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.51  E-value=0.37  Score=45.57  Aligned_cols=32  Identities=9%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             hHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          51 TKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        51 ~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..+..+.....|+|.||+....+.||.|||+|
T Consensus       213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r  244 (475)
T TIGR03428       213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPRR  244 (475)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHhcCcch
Confidence            34666788899999999999999999999999

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=96.49  E-value=0.088  Score=48.48  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             hHHHHHHHhhhhccC-------Ccccchhhhc-cccCCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcc
Q psy9204          51 TKISLALYSGLFAFG-------GWNYLNFVVD-ELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ  122 (265)
Q Consensus        51 ~~~~~a~~~~~~~y~-------Gw~~~n~v~~-e~k~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g  122 (265)
                      +.+..++.++.++||       ||...+.+.+ |.|||++. .+   |.        +                   .+|
T Consensus       174 ~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~-~~---~~--------i-------------------~~G  222 (378)
T TIGR00796       174 QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKI-TK---YT--------I-------------------KAG  222 (378)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH-HH---HH--------H-------------------HHH
Confidence            468899999999999       9999999998 88888872 11   00        0                   001


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhcccccc--CCch--HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy9204         123 SVGLSIVIWTVCGLLSTIGALCYAELGTCISR--SGGD--YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYA  198 (265)
Q Consensus       123 ~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~--~GG~--y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l  198 (265)
                      -.....+..+..+ +..+.+..-.+    .++  +|+.  -..+++.+|+.-+.+.+-...+ .+..+......++++++
T Consensus       223 ~ia~i~l~~vY~~-L~~lGa~~~~~----~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~l-ACLtT~iGli~~~a~~f  296 (378)
T TIGR00796       223 LIAAVLLAFIYLS-LFYLGATSAAA----AGDAVNGAQILSAYSQHLFGSLGSFLLGLIITL-ACLTTAVGLTTACSEYF  296 (378)
T ss_pred             HHHHHHHHHHHHH-HHHHhcCcHhh----hcccCCcHHHHHHHHHHHcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            0000111112211 12222222222    222  2322  3556689999988888877777 67677777777888998


Q ss_pred             hhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         199 IKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA  256 (265)
Q Consensus       199 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~  256 (265)
                      .. +.+.  .|   .....++..+....+...|.+..-++..-...+.--..++.++.
T Consensus       297 ~~-~~~k--~~---y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill  348 (378)
T TIGR00796       297 HK-LVPK--LS---YKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILL  348 (378)
T ss_pred             HH-hcCC--CC---HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            86 3443  22   22333444445555555676666555444433333333333333

transmembrane helical spanners.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=96.48  E-value=0.36  Score=45.66  Aligned_cols=33  Identities=9%  Similarity=0.113  Sum_probs=29.6

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      .+..+..++....|+|.||+...++.||.|| +|
T Consensus       197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r  229 (473)
T TIGR00905       197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KS  229 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cc
Confidence            3567788899999999999999999999999 76

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=96.44  E-value=0.32  Score=45.67  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      .+.++..++..+.|+|.||+......||.|||+|
T Consensus       179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r  212 (446)
T PRK10197        179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK  212 (446)
T ss_pred             cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh
Confidence            3668899999999999999999999999999998

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=96.15  E-value=0.34  Score=45.33  Aligned_cols=33  Identities=9%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +.++..++..++|+|+||+...++.||.|||+|
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r  226 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPGK  226 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence            456777888999999999999999999999998

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=96.13  E-value=0.47  Score=44.81  Aligned_cols=33  Identities=18%  Similarity=0.438  Sum_probs=31.0

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..++..++..++|+|.||+....+.||.|||+|
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r  228 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRK  228 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh
Confidence            567888999999999999999999999999998

>PRK11387 S-methylmethionine transporter; Provisional

Probab=96.03  E-value=0.44  Score=45.05  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..++..++..+.|+|.||+......||.|||+|
T Consensus       205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r  237 (471)
T PRK11387        205 GLPILMTMVAVNFAFSGTELIGIAAGETENPAK  237 (471)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh
Confidence            346778888999999999999999999999998

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=95.96  E-value=0.64  Score=43.59  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=31.5

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ++.++..++..+.|+|.||+....+.||.|||+|
T Consensus       199 g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r  232 (452)
T TIGR01773       199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK  232 (452)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh
Confidence            3567889999999999999999999999999998

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00909 2A0306 amino acid transporter

Probab=95.93  E-value=0.61  Score=43.29  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=31.2

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +.+++..++..+.|+|.||+...++.||.|||+|
T Consensus       193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r  226 (429)
T TIGR00909       193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPER  226 (429)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc
Confidence            4567888999999999999999999999999988

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=95.89  E-value=0.46  Score=44.61  Aligned_cols=166  Identities=14%  Similarity=0.036  Sum_probs=77.2

Q ss_pred             ccccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204          85 LPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  163 (265)
Q Consensus        85 ~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~  163 (265)
                      .|+-+|+-+.++...+=++..+....+..... ....| +...++++-+++.++........+..+.++-.  ......|
T Consensus         7 vp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~-l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR   83 (442)
T TIGR00800         7 VKEEERTWSFLNYFSLWLGAAFNIATWAIGAL-GLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSR   83 (442)
T ss_pred             CCcccCCccHHHHHHHHHHHhhhHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhh
Confidence            34456666777766665554332222222111 11112 22223333233333333333333333333221  2356677


Q ss_pred             HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hcCCCCC-Cch--HHHHHHHHHHHHH--HHHHHhhhhhHH
Q psy9204         164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK---PFFPDSE-LPD--RAVLLLAAACLCV--LTAVNCMSVSWA  235 (265)
Q Consensus       164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~---~~~~~~~-~~~--~~~~~i~~~~l~~--~~~in~~gvk~~  235 (265)
                      ..||.+-+.+.....++ ......+.++...++.+..   .+.+... .++  .....++.+++..  .......|.|..
T Consensus        84 ~~FG~~Gs~~~~~~~~i-~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~  162 (442)
T TIGR00800        84 ASFGIYGSLLPSLLRIV-MAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIR  162 (442)
T ss_pred             hhhhhhHhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            88998888887777776 5566677777776655432   2223210 010  0011222222222  223456677776


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy9204         236 MQVQTLFTVGKLVALFGII  254 (265)
Q Consensus       236 ~~i~~v~~~~~i~~~~~~i  254 (265)
                      .+.+.......++.+++.+
T Consensus       163 ~~~~~~a~~~~~~~~~~~~  181 (442)
T TIGR00800       163 HLFEWLAVVPPFAAFGMLI  181 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666655554444443

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK15049 L-asparagine permease; Provisional

Probab=95.87  E-value=0.56  Score=44.78  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ......++..+.|+|.||+....+.||.|||+|
T Consensus       219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r  251 (499)
T PRK15049        219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQT  251 (499)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh
Confidence            344556778899999999999999999999998

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=95.82  E-value=1.1  Score=42.47  Aligned_cols=31  Identities=16%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ....++..+.|+|.||+....+.||.|||+|
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r  248 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEV  248 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCChhh
Confidence            3556778899999999999999999999998

>PRK10836 lysine transporter; Provisional

Probab=95.75  E-value=1.5  Score=41.72  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=25.2

Q ss_pred             HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      .+..++....|+|+||+....+.||.|||+|
T Consensus       206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~r  236 (489)
T PRK10836        206 AMIGVAMIVGFSFQGTELIGIAAGESEDPAK  236 (489)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCHHH
Confidence            3333344457999999999999999999998

>PRK10238 aromatic amino acid transporter; Provisional

Probab=95.61  E-value=0.65  Score=43.74  Aligned_cols=33  Identities=21%  Similarity=0.466  Sum_probs=29.7

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +.++..++..+.|+|.||+......||.|||+|
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r  231 (456)
T PRK10238        199 FTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ  231 (456)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh
Confidence            556667788899999999999999999999998

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=95.56  E-value=2.2  Score=40.32  Aligned_cols=31  Identities=10%  Similarity=0.203  Sum_probs=27.4

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDP   80 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p   80 (265)
                      ..++..++....|+|.||+....+.||.||+
T Consensus       194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~  224 (468)
T TIGR03810       194 MTQVKNMMLVTVWVFIGIEGASMLSARAEKR  224 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHhhhHhhccCc
Confidence            5567789999999999999999999999883

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=95.49  E-value=1.3  Score=41.62  Aligned_cols=33  Identities=24%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +.++..++..+.|+|.||+......||.|||+|
T Consensus       198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k  230 (457)
T PRK10580        198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK  230 (457)
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh
Confidence            456777899999999999999999999999998

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=95.42  E-value=1.3  Score=42.93  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..++..++..+.|+|.||+....+.||.|||+|
T Consensus       230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r  262 (557)
T TIGR00906       230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR  262 (557)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc
Confidence            456777888899999999999999999999998

>PRK10746 putative transport protein YifK; Provisional

Probab=95.34  E-value=0.65  Score=43.86  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=31.5

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      .+.++..++..+.|+|.||+......||.|||+|
T Consensus       198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k  231 (461)
T PRK10746        198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQV  231 (461)
T ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh
Confidence            3667888999999999999999999999999998

>PRK11017 codB cytosine permease; Provisional

Probab=95.25  E-value=1.6  Score=40.61  Aligned_cols=90  Identities=12%  Similarity=-0.004  Sum_probs=55.7

Q ss_pred             hHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy9204         158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQ  237 (265)
Q Consensus       158 ~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~  237 (265)
                      .....|..||.+-+.+.+....+ ......+.+....+..+.+ ..+ .+.+     ...+++.++......+|.|...|
T Consensus        73 ~~v~sR~~FG~~Gs~l~~~~~~i-~~igW~av~~~~~~~~l~~-~~~-~~~~-----~~~~i~~~l~~~~~~~G~~~i~~  144 (404)
T PRK11017         73 THLLARFSFGEKGSWLPSLLLGF-TQVGWFGVGVAMFAIPVVK-ATG-LDIN-----LLIVLSGLLMTVTAYFGISALTI  144 (404)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHH-HhC-CCHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778898877777776666 4445555555555555544 222 2211     12333445556677888899999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy9204         238 VQTLFTVGKLVALFGIIA  255 (265)
Q Consensus       238 i~~v~~~~~i~~~~~~ii  255 (265)
                      ++++...+.++.++...+
T Consensus       145 ~~~~~~p~~~~~~~~~~~  162 (404)
T PRK11017        145 LSRIAVPAIALLGGYSVW  162 (404)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988877665554443

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=95.12  E-value=0.65  Score=43.57  Aligned_cols=149  Identities=16%  Similarity=0.198  Sum_probs=92.5

Q ss_pred             hhccccceeeecchHHHHHhccc-chHHHHHHHHHHHHHHHHH-HHHHHhccccccCCchHHhHHHHhCchhHHHHHHHH
Q psy9204         101 IVGCIIGSGIFVSPAGVLAETQS-VGLSIVIWTVCGLLSTIGA-LCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA  178 (265)
Q Consensus       101 ~i~~vig~gi~~~~~~~~~~~g~-~~~~i~~~~i~~l~~~~~a-~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~  178 (265)
                      -++.-.|+|=...|...-..+|. ...+.+++++.++..=+.+ ++.+       ..||.+.=..++.||+.|.+..-..
T Consensus        17 LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava-------~~~g~~~~l~~rv~~~f~~~f~~~i   89 (439)
T PRK15433         17 TFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA-------KVGGGVDSLSTPIGKVAGVLLATVC   89 (439)
T ss_pred             HHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHhhhcchHHHHHHHHHH
Confidence            34445667777888888777774 4555666666665433322 2222       2344555555667888887765544


Q ss_pred             HHHHHhhHHHHHHHHHH---HHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         179 LLIMRPTTQAIVALTFA---QYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIA  255 (265)
Q Consensus       179 ~l~~~~~~~a~~~~~~~---~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii  255 (265)
                      .+...+  .-...+..+   +.-...+.|+   +.....+..+++..+..++.++.-|...++-++++.+.++.++++++
T Consensus        90 ~l~IGP--~~aiPRtaavsfEm~i~p~~~~---~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii  164 (439)
T PRK15433         90 YLAVGP--LFATPRTATVSFEVGIAPLTGD---SALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSV  164 (439)
T ss_pred             HHHHhh--ccccCCccccchhheeeccCCc---ccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHH
Confidence            431111  111111111   1111123332   12344677888888999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy9204         256 AGIGYL  261 (265)
Q Consensus       256 ~g~~~~  261 (265)
                      .++..-
T Consensus       165 ~~i~~p  170 (439)
T PRK15433        165 AAIVWP  170 (439)
T ss_pred             HHHhcC
Confidence            998864

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=95.12  E-value=0.67  Score=43.49  Aligned_cols=116  Identities=12%  Similarity=-0.014  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchH
Q psy9204         132 TVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDR  211 (265)
Q Consensus       132 ~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~  211 (265)
                      +++.++-.+....+++++.+...+  +..-.|..||.+-+.+.....++ .+....+.+....++....  .+.  .|  
T Consensus        59 llG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~-~~iGW~~v~~~l~~~a~~~--~~~--~~--  129 (442)
T COG1457          59 LLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGI-TLIGWFGVNVILSGIAIGS--GTG--LP--  129 (442)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHH-HHhhHHHHHHHHhcccccc--CCC--Cc--
Confidence            444444444455556666554433  23445567888887777777666 5666677776666665332  122  22  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         212 AVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG  257 (265)
Q Consensus       212 ~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g  257 (265)
                       ..+..++.-++.+...++|.|...+++++..+..++..+..+...
T Consensus       130 -~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~  174 (442)
T COG1457         130 -VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALL  174 (442)
T ss_pred             -HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             234455555677788889999999999999998888777665543

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=95.06  E-value=0.79  Score=42.88  Aligned_cols=151  Identities=18%  Similarity=0.237  Sum_probs=95.5

Q ss_pred             hccccceeeecchHHHHHhccc-chHHHHHHHHHHHHHHHHH-HHHHHhccccccCCchHHhHHHHhCchhHHHHHHHHH
Q psy9204         102 VGCIIGSGIFVSPAGVLAETQS-VGLSIVIWTVCGLLSTIGA-LCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL  179 (265)
Q Consensus       102 i~~vig~gi~~~~~~~~~~~g~-~~~~i~~~~i~~l~~~~~a-~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~~  179 (265)
                      ++.-.|+|=...|..+-..+|+ ...+.+++++.++..=+.+ ++.+       ..||.+.=..++.||+.|.+..-...
T Consensus        13 FamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~-------~~~~~~~~l~~~v~~~f~~if~~~i~   85 (427)
T PF05525_consen   13 FAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA-------KSGGGIEDLASRVGPKFALIFTILIY   85 (427)
T ss_pred             HHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHhcccCcHHHHHHHHHHH
Confidence            3444567777788887777774 4455556666665433322 2222       34545555566778888887765544


Q ss_pred             HHHHhh-HHH-HHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         180 LIMRPT-TQA-IVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAG  257 (265)
Q Consensus       180 l~~~~~-~~a-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g  257 (265)
                      +...+. ..+ ..+.++ +.....+++.  .+.+...+..+++..+...+.+...|...++-++++.+.++.++++++.+
T Consensus        86 l~IGP~~aiPRtaa~sf-e~~i~p~~~~--~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~  162 (427)
T PF05525_consen   86 LSIGPLFAIPRTAAVSF-EMGIAPFFPE--NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKG  162 (427)
T ss_pred             HHHHhcccCcchhhhhH-HHhhhccCCc--ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            411111 111 122222 2222233442  33455667788888899999999999999999999999999999999999


Q ss_pred             HHHhh
Q psy9204         258 IGYLG  262 (265)
Q Consensus       258 ~~~~~  262 (265)
                      +....
T Consensus       163 i~~p~  167 (427)
T PF05525_consen  163 IFSPI  167 (427)
T ss_pred             HHcCC
Confidence            88643

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=94.98  E-value=0.47  Score=44.34  Aligned_cols=163  Identities=15%  Similarity=0.002  Sum_probs=75.7

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCc-hHHhHH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAYIL  163 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG-~y~~~~  163 (265)
                      |+-+|+-+.++...+=++..+....+..-.. ....| +...++++-+++.++..+.....+.++.   +.|= +....|
T Consensus         3 P~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~---r~Gl~~~v~sR   78 (440)
T PF02133_consen    3 PESERTWSPWSLFWIWFGANISIATFVTGAL-GVALGLSFWQAILAILIGNLLGAILVALMGIIGP---RTGLPTMVLSR   78 (440)
T ss_dssp             --GG--B-HHHHHHHHCHHH-SCHHH-HHHH-HHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH---CC---HHHHTT
T ss_pred             chhcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCchhcch
Confidence            3445666677766654444332222222111 11222 2222333333433333333333333333   3332 345555


Q ss_pred             HHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCC----------CchHHHHHHHHHHHHHHHHHHhhhhh
Q psy9204         164 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE----------LPDRAVLLLAAACLCVLTAVNCMSVS  233 (265)
Q Consensus       164 ~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~----------~~~~~~~~i~~~~l~~~~~in~~gvk  233 (265)
                      ..||.+-+.+......+ ......+.++...++.+........+          .......+..++.-++......+|.|
T Consensus        79 ~~FG~~Gs~l~~~l~~i-~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~  157 (440)
T PF02133_consen   79 ASFGYRGSKLPSLLRAI-SAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMK  157 (440)
T ss_dssp             TTS-TTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHH
T ss_pred             hccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHH
Confidence            77888877777777666 55566677777666666643321111          00111222233344556667788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy9204         234 WAMQVQTLFTVGKLVALFGI  253 (265)
Q Consensus       234 ~~~~i~~v~~~~~i~~~~~~  253 (265)
                      ...+++.+...+..+..+..
T Consensus       158 ~l~~~~~~~~~~~~~~~~~~  177 (440)
T PF02133_consen  158 ALRRLAVIAAPILLVVFIGM  177 (440)
T ss_dssp             HHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHhHHhhhhHHHHhhhhhe
Confidence            99998888777655554333

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>PTZ00206 amino acid transporter; Provisional

Probab=94.93  E-value=0.87  Score=43.16  Aligned_cols=101  Identities=8%  Similarity=0.079  Sum_probs=59.6

Q ss_pred             hhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHH
Q psy9204          96 EGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRL  175 (265)
Q Consensus        96 ~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~g  175 (265)
                      +...-...+++|+|+..+|... ...|-. ..++..++.++++......+.+.+.+ +.......-.++.+||+..++..
T Consensus        64 ~s~fnL~~~~iGaGILsLP~Af-~~~G~v-~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~~v~  140 (467)
T PTZ00206         64 ASAFNIASSTVGAGIVGLPSAA-NSSGLV-MAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSYYVA  140 (467)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHHHHH
Confidence            3444455568889988888653 343422 22222344444444444555555544 33333444555778999999988


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhh
Q psy9204         176 WVALLIMRPTTQAIVALTFAQYAIK  200 (265)
Q Consensus       176 w~~~l~~~~~~~a~~~~~~~~~l~~  200 (265)
                      ....+ .....+.......++.+..
T Consensus       141 ~~~~~-~~~G~cv~YlIiigd~l~~  164 (467)
T PTZ00206        141 ATRAF-HGFSACVAYVISVGDILSA  164 (467)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            88777 5556666666667666654

>TIGR00813 sss transporter, SSS family

Probab=94.85  E-value=2.6  Score=38.96  Aligned_cols=160  Identities=11%  Similarity=-0.038  Sum_probs=84.4

Q ss_pred             cccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhccccccCCchHHhHHHHhCc
Q psy9204          90 QRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVC-GLLSTIGALCYAELGTCISRSGGDYAYILVAFGE  168 (265)
Q Consensus        90 r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~-~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~  168 (265)
                      |+++++.......++..+...+..........|-   ..+.+.++ .+...+.+..+.+.-++.+ .-....|.+++||+
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~   78 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGF---AIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK   78 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence            6677776655555554444333332232333241   11111122 2223334445555444433 44578999999998


Q ss_pred             h-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204         169 L-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL  247 (265)
Q Consensus       169 ~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i  247 (265)
                      + ...+.+....+ ......+......+..+.. +.+ .  +.+.  .+.+..+++..+...-|.|...+.+.+=.++.+
T Consensus        79 ~~~~~~~~~~~i~-~~~~~~~~q~~g~~~il~~-~~g-i--~~~~--~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~  151 (407)
T TIGR00813        79 RILRGLSVLSLIL-YIFLYMSVDLFSGALLIEL-ITG-L--DLYL--SLLLLGAITILYTVFGGLKAVVWTDTIQAVIMI  151 (407)
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC-c--hHHH--HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence            4 55555555544 4445566666666666654 322 2  2222  222333345556667788888888777777776


Q ss_pred             HHHHHHHHHHHHH
Q psy9204         248 VALFGIIAAGIGY  260 (265)
Q Consensus       248 ~~~~~~ii~g~~~  260 (265)
                      +..+++.+..+.+
T Consensus       152 ~~~i~~~~~~~~~  164 (407)
T TIGR00813       152 LGTFILPVFAFSE  164 (407)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555554443

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>KOG1303|consensus

Probab=94.80  E-value=0.75  Score=43.22  Aligned_cols=169  Identities=14%  Similarity=0.051  Sum_probs=96.2

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCc-----hHHhH
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-----DYAYI  162 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG-----~y~~~  162 (265)
                      .+|.-+++++..-.++.++|.|...+|-. ..+.| ....+...++.+++.+..+..+.++-...|...|     .-...
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lG-W~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~  111 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLG-WISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG  111 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHH-HHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence            36678999999999999999999988844 44434 2221223355555666666555555555555555     33445


Q ss_pred             HHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCC-CCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204         163 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDS-ELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV  238 (265)
Q Consensus       163 ~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~-~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i  238 (265)
                      +++||++.-.+.++...+ .............++-+...+   ..+. ... ...+.+...++.+.... +-......++
T Consensus       112 ~~afG~~~~~iv~~~~~~-~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~-~~~f~iif~~i~~~~s~-lp~~~~l~~~  188 (437)
T KOG1303|consen  112 QAAFGPKGRLLVSVLQYL-ELFGICVVYIILAGDNLKALFPIVSLNDNSLD-KQYFIIIFGLIVLPLSQ-LPNFHSLSYL  188 (437)
T ss_pred             HHHhCCCceEeeeHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-ceehhhhHHHHHHHHHH-CCCcchhHHH
Confidence            589998776677776666 333344444444455554322   1111 111 12223333322222222 4555666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q psy9204         239 QTLFTVGKLVALFGIIAAGIGYL  261 (265)
Q Consensus       239 ~~v~~~~~i~~~~~~ii~g~~~~  261 (265)
                      ..+..+..+......+++|+..-
T Consensus       189 S~~~avmS~~~a~~~~~~g~~~g  211 (437)
T KOG1303|consen  189 SLVGAVMSTLYAVILIVLGIADG  211 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccc
Confidence            77777777777777777776654

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=94.37  E-value=4.1  Score=38.80  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=27.9

Q ss_pred             HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ++..++..+.|+|.||+......||.|||+|
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~  242 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEK  242 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence            3556778899999999999999999999998

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=94.30  E-value=1.6  Score=40.39  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             hhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHH
Q psy9204         100 IIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA  178 (265)
Q Consensus       100 l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~  178 (265)
                      +.++.-.|+|=...|...-..+| ..+.+.+++++.++..=+....-.      -..||.+.=..+..||+.|.+..-..
T Consensus        13 mLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~------a~~g~~~~~l~~~i~~~fg~~f~~~i   86 (431)
T COG1114          13 MLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAV------ALYGGGVESLATRIGPWFGVLFAIAI   86 (431)
T ss_pred             HHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHh------hccCCCHHHHhhhccchHHHHHHHHH
Confidence            33444556676777777777767 456666777766654322222211      14555556666777899887766554


Q ss_pred             HHHHHhhH-HH-HHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         179 LLIMRPTT-QA-IVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAA  256 (265)
Q Consensus       179 ~l~~~~~~-~a-~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~  256 (265)
                      .+..-+.. .. ..+.++-.-+. .+.++.  +.+...+..+++..+...+.+...|...|+-++++.++++.++.+++.
T Consensus        87 yLsIGPffAiPRt~~vsfe~~i~-p~~~~~--~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~  163 (431)
T COG1114          87 YLSIGPFFAIPRTGAVSFEVGIS-PLLGDS--SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIA  163 (431)
T ss_pred             HHHhcccccCCcccchhHHHhhh-cccCCC--cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            44111110 00 11111111111 122221  344566777888888999999999999999999999999999999888


Q ss_pred             HHHHhh
Q psy9204         257 GIGYLG  262 (265)
Q Consensus       257 g~~~~~  262 (265)
                      ++....
T Consensus       164 ~~~~p~  169 (431)
T COG1114         164 AIIPPA  169 (431)
T ss_pred             HHhCCC
Confidence            776543

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=94.21  E-value=5.1  Score=37.84  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             hhhhccCCcccchhhhccccCCCC
Q psy9204          59 SGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        59 ~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..+|+|.||+......||.|||+|
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r  225 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDK  225 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCccc
Confidence            357899999999999999999999

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00908 2A0305 ethanolamine permease

Probab=94.05  E-value=5  Score=37.43  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..++..++..+.|+|.||+....+.||.|||+|
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r  222 (442)
T TIGR00908       190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR  222 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            456778888899999999999999999999998

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=93.93  E-value=5  Score=37.02  Aligned_cols=28  Identities=18%  Similarity=0.394  Sum_probs=25.2

Q ss_pred             HHHHHHHhhhhccCCcccchhhhccccC
Q psy9204          52 KISLALYSGLFAFGGWNYLNFVVDELQD   79 (265)
Q Consensus        52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~   79 (265)
                      .+..++..++|+|.||+..+.+.||.||
T Consensus       189 ~~~~~~~~~~~~~~G~e~~~~~~~E~k~  216 (426)
T PF13520_consen  189 GFLAGFSVAFFAFSGFEAIASLAEENKN  216 (426)
T ss_dssp             HHHHHHHHHGGGGTTTTHHHHGGGGSSS
T ss_pred             chhhHHHHHHhhcccccccccccccccc
Confidence            4678899999999999999999999666

...

>KOG1304|consensus

Probab=93.93  E-value=3.4  Score=38.86  Aligned_cols=159  Identities=15%  Similarity=0.069  Sum_probs=86.1

Q ss_pred             ccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHhccccccC------------
Q psy9204          91 RLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTI---GALCYAELGTCISRS------------  155 (265)
Q Consensus        91 ~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~---~a~~~aEl~s~~P~~------------  155 (265)
                      ..+..+.+.=-.-.++|+|.+..|.. ...+|-....+...+++.+...|   ..-|--+++++.-++            
T Consensus        46 ~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~  124 (449)
T KOG1304|consen   46 PTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM  124 (449)
T ss_pred             CCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence            45555656555666788999888865 44445322222223444443333   455666676664221            


Q ss_pred             CchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHh-hhhhH
Q psy9204         156 GGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNC-MSVSW  234 (265)
Q Consensus       156 GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~-~gvk~  234 (265)
                      .+.+.| .|.+||+..+++.....+ .+...+.......++-+++.+. ....+.+.......+.+.....+|. +..|.
T Consensus       125 ~~~~~~-~r~~g~~~r~~V~~~L~i-~QlGfc~vY~VFva~nl~~i~~-~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~  201 (449)
T KOG1304|consen  125 EGGPGW-LRKYGPAARFVVNFFLVI-TQLGFCCVYLVFVATNLKQIVD-EHSPGVLSVRLYILIQLPPLLLLNLIRNLKI  201 (449)
T ss_pred             cCCcHH-HHhhcHHHHHHHHHHHHH-HHhchhhEEeeeHHhhHHHHHh-ccCCCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence            222345 688999999988877777 6666666666666777765443 1222333344444444444444443 33455


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy9204         235 AMQVQTLFTVGKLVALFGI  253 (265)
Q Consensus       235 ~~~i~~v~~~~~i~~~~~~  253 (265)
                      ..-+..+.-++.++.+.++
T Consensus       202 Lsp~Sl~Anv~~~~g~~ii  220 (449)
T KOG1304|consen  202 LSPFSLFANVFILVGLAII  220 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            5444444444444444433

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]

Probab=93.48  E-value=7.2  Score=37.11  Aligned_cols=182  Identities=11%  Similarity=0.006  Sum_probs=92.9

Q ss_pred             CCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCch
Q psy9204          79 DPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGD  158 (265)
Q Consensus        79 ~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~  158 (265)
                      |++-.|.++-+|.-+.++...+=.+.+.....+...........++.-.+++.+++-++.......-+..++++...  .
T Consensus        28 N~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIp--F  105 (497)
T COG1953          28 NEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIP--F  105 (497)
T ss_pred             CCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCC--c
Confidence            44433456788999999988877766655555555545444423444344333333333333333223323322111  1


Q ss_pred             HHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---hhcCCCCC-----C----chHHHHHHHHHHHHHHHH
Q psy9204         159 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI---KPFFPDSE-----L----PDRAVLLLAAACLCVLTA  226 (265)
Q Consensus       159 y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~---~~~~~~~~-----~----~~~~~~~i~~~~l~~~~~  226 (265)
                      -...+..||-+-+-+-.-...+ .....-.+.+...+..+.   ..+.|...     .    -+..+.+-.+++-.+...
T Consensus       106 pv~~RaSFGi~Ga~~p~l~R~i-~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l  184 (497)
T COG1953         106 PVLSRASFGIYGANFPALIRAI-VAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLL  184 (497)
T ss_pred             hHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHH
Confidence            2344555665444433333333 122222333333333222   22233211     1    012233333334444445


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9204         227 VNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYLGI  263 (265)
Q Consensus       227 in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~~~~~~  263 (265)
                      +-.+|.+..+|++.....+..+..+.+.+-...+..+
T Consensus       185 ~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g  221 (497)
T COG1953         185 VLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGG  221 (497)
T ss_pred             HHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCC
Confidence            6678999999999999999999988888877766544

>KOG1289|consensus

Probab=93.38  E-value=4.3  Score=38.96  Aligned_cols=88  Identities=14%  Similarity=0.253  Sum_probs=56.5

Q ss_pred             HHHHHHHhhhhccCCcccchhhhccccCCCCCCccccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHH
Q psy9204          52 KISLALYSGLFAFGGWNYLNFVVDELQDPYNLVLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIW  131 (265)
Q Consensus        52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~~~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~  131 (265)
                      ++-+++...-|...|.+....+.||.||+++ ..|                            ..+..+      ..+++
T Consensus       253 afil~f~~~~wt~sGyDa~~H~aEE~~nAsk-~aP----------------------------rgIi~s------~~i~~  297 (550)
T KOG1289|consen  253 AFILGFFNPAWTMSGYDAAAHMAEETKNASK-AAP----------------------------RGIISS------IAIGF  297 (550)
T ss_pred             HHHHhhccceeEEeccCchHHHHHHhcchhh-hcc----------------------------HHHHHH------HHHHH
Confidence            5667888999999999999999999999998 222                            111111      12334


Q ss_pred             HHHHHHHHHHHHHHH-HhccccccCCch--HHhHHHHhCchhHHHH
Q psy9204         132 TVCGLLSTIGALCYA-ELGTCISRSGGD--YAYILVAFGELPAFLR  174 (265)
Q Consensus       132 ~i~~l~~~~~a~~~a-El~s~~P~~GG~--y~~~~~~~g~~~gf~~  174 (265)
                      +++.++.+++++++. .+.+.+-+..|+  -.+.....||+.+...
T Consensus       298 i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~  343 (550)
T KOG1289|consen  298 ILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFL  343 (550)
T ss_pred             HHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEeh
Confidence            555556666677766 555555444333  3445577888776333

>TIGR02119 panF sodium/pantothenate symporter

Probab=93.11  E-value=7.8  Score=36.60  Aligned_cols=162  Identities=9%  Similarity=-0.036  Sum_probs=79.4

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHH---HHHHHHHHHHHHHHHHhccccccCCchHHhHHH
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIW---TVCGLLSTIGALCYAELGTCISRSGGDYAYILV  164 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~---~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~  164 (265)
                      -.|+++.+.......++.++...+..........|-. .....+   ..+.++....+.-+.+..++. +.-....|.++
T Consensus        38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~  115 (471)
T TIGR02119        38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG-WVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKA  115 (471)
T ss_pred             eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence            4577888876666666655544443333323332311 110100   111111111122233333333 34457899999


Q ss_pred             HhCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy9204         165 AFGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFT  243 (265)
Q Consensus       165 ~~g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~  243 (265)
                      +||++ ...+.+-...+ .............+..+.. +++   .|.+..  +.+..++.+.+....|.|...+.+.+-.
T Consensus       116 Ryg~~~~~~~~~i~~i~-~~~~~~~~ql~g~g~~l~~-~~g---i~~~~~--iii~~~iv~iYt~~GG~~av~~td~iQ~  188 (471)
T TIGR02119       116 RYNNKFLVWLSSISLLV-FFFSAMVAQFIGGARLIES-LTG---LSYLTA--LFIFSSSVLIYTTFGGFRAVALTDAIQG  188 (471)
T ss_pred             HcCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHC---CCHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99954 34444443333 3333334444444555543 222   232222  2233334566667778888888888777


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9204         244 VGKLVALFGIIAAGI  258 (265)
Q Consensus       244 ~~~i~~~~~~ii~g~  258 (265)
                      ++.++..+++.+..+
T Consensus       189 ~v~~~~~~~~~~~~l  203 (471)
T TIGR02119       189 IVMFTGTTILLIAVI  203 (471)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777766665554443

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=93.04  E-value=8.6  Score=36.75  Aligned_cols=159  Identities=14%  Similarity=-0.001  Sum_probs=83.0

Q ss_pred             cccccchhhhHHhhhcc-ccc-eeeecchHHHHHhcccchHHHHHH--HHHHHHHHHHHHHHHHhccccccCCchHHhHH
Q psy9204          88 TGQRLVRLEGVSIIVGC-IIG-SGIFVSPAGVLAETQSVGLSIVIW--TVCGLLSTIGALCYAELGTCISRSGGDYAYIL  163 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~-vig-~gi~~~~~~~~~~~g~~~~~i~~~--~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~  163 (265)
                      -.|+++.+ ..+++.+. ..+ ......|+..+.. |.........  +...+.....+--..+++ +-+..-....|.+
T Consensus        36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~-G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~  112 (493)
T COG0591          36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYAS-GLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE  112 (493)
T ss_pred             cCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence            35677777 55554444 333 4444556555544 4221111111  122223333455556666 5556666899999


Q ss_pred             HHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy9204         164 VAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLF  242 (265)
Q Consensus       164 ~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~  242 (265)
                      ++|| +....+.+....+ ......+......+..+.. .++ .+ . .  ....+....+..+.-..|.|...+...+=
T Consensus       113 ~Rf~s~~lr~l~ali~iv-~~i~yia~ql~~~~~~~~~-~~g-i~-~-~--~~~~~~~~~v~~Yt~~gG~~av~~Td~iq  185 (493)
T COG0591         113 ARFGSKILRILSALIIIV-FFIPYIALQLVAGGLLLSL-LFG-IS-Y-V--TGILIGALIVALYTFLGGLRAVVWTDFIQ  185 (493)
T ss_pred             HHcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh-hcC-CC-H-H--HHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9999 8888888776666 6666677777777666643 332 22 1 1  12222333444444455555554444444


Q ss_pred             HHHHHHHHHHHHHH
Q psy9204         243 TVGKLVALFGIIAA  256 (265)
Q Consensus       243 ~~~~i~~~~~~ii~  256 (265)
                      ..+..+.+..+.+.
T Consensus       186 g~im~i~~~~~~i~  199 (493)
T COG0591         186 GLIMLIALIVIPIL  199 (493)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444443333

>PRK09395 actP acetate permease; Provisional

Probab=92.83  E-value=9.8  Score=36.86  Aligned_cols=95  Identities=9%  Similarity=-0.123  Sum_probs=53.1

Q ss_pred             hHHhHHHHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204         158 DYAYILVAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM  236 (265)
Q Consensus       158 ~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~  236 (265)
                      .+.|.+++|| |....+.+....+ .............+..+.. +.+   .+.+.  .+.+..++...+...-|.|...
T Consensus       134 ~~d~l~~Rygs~~~r~l~av~~iv-~~~~yl~~q~~g~g~il~~-~~g---i~~~~--~ili~~~i~~iYt~~GGm~av~  206 (551)
T PRK09395        134 FADVASYRLKQGPIRTLSACGSLV-VVALYLIAQMVGAGKLIQL-LFG---LNYHV--AVVLVGVLMMVYVLFGGMLATT  206 (551)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC---CCHHH--HHHHHHHHHHHHHhhcchHHHH
Confidence            5667779998 4577776665554 3334444445555554543 222   22222  2333334455566667888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         237 QVQTLFTVGKLVALFGIIAAGIG  259 (265)
Q Consensus       237 ~i~~v~~~~~i~~~~~~ii~g~~  259 (265)
                      +.+.+=.++.++..+++.+..+.
T Consensus       207 ~TD~iQ~iim~~g~ii~~~~~~~  229 (551)
T PRK09395        207 WVQIIKAVLLLSGATFMAFMVMK  229 (551)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777666665555444433

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=92.69  E-value=8.4  Score=35.76  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=31.8

Q ss_pred             CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ...+.+..++..+.|+|.||+......||.|||+|
T Consensus       198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r  232 (466)
T COG0531         198 GSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR  232 (466)
T ss_pred             chHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc
Confidence            34567888999999999999999999999999988

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=92.57  E-value=9.9  Score=36.83  Aligned_cols=154  Identities=14%  Similarity=0.026  Sum_probs=74.4

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVG-LSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~-~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      -.|+++.+..-....++..+...+..........|-.+ ...++|.++.   .+.++.+++.-++... -..+.|.+++|
T Consensus        30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~---~~~~~~~~p~~rr~~~-~T~~e~l~~Rf  105 (552)
T TIGR03648        30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGY---VLLALLLAPYLRKFGK-YTVPDFIGDRY  105 (552)
T ss_pred             eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHH---HHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence            35678887755555555444433333222222223211 1112233322   2233445555454433 35789999999


Q ss_pred             Cch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         167 GEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       167 g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      +++ ...+.+....+ ......+......+..+.. +.+   .+.+...++.  .++.+.+...-|.|...+.+.+=.++
T Consensus       106 ~s~~~~~~~~i~~~~-~~~~~l~~ql~~~~~~l~~-~~g---i~~~~~iii~--~~i~~iYt~~GG~~aV~~TD~iQ~ii  178 (552)
T TIGR03648       106 YSNTARLVAVICAIF-ISFTYVAGQMRGVGVVFSR-FLE---VDFETGVFIG--MAIVFFYAVLGGMKGVTWTQVAQYIV  178 (552)
T ss_pred             CCCceehhHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHC---CCHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            854 56666555444 3333344444444444443 222   2222222222  23445555566777777666666655


Q ss_pred             HHHHHHH
Q psy9204         246 KLVALFG  252 (265)
Q Consensus       246 ~i~~~~~  252 (265)
                      .++..++
T Consensus       179 m~ig~i~  185 (552)
T TIGR03648       179 LIVAYLV  185 (552)
T ss_pred             HHHHHHH
Confidence            5554443

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=92.56  E-value=3.5  Score=37.17  Aligned_cols=142  Identities=15%  Similarity=0.113  Sum_probs=88.5

Q ss_pred             hhhccccceeeecchHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhCchhHHHHHHHH
Q psy9204         100 IIVGCIIGSGIFVSPAGVLAETQSV-GLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA  178 (265)
Q Consensus       100 l~i~~vig~gi~~~~~~~~~~~g~~-~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g~~~gf~~gw~~  178 (265)
                      ..+++++|.| |.+-+++.+-.+.- ..+.++-++++++....+....+++.++.. ...-.+.++.+||+++.+.--..
T Consensus        11 ~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~~i   88 (349)
T COG3949          11 AFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDIII   88 (349)
T ss_pred             HHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHHHH
Confidence            3455666655 45556777666642 224555678888888899999999998854 44778899999999998877655


Q ss_pred             HHHHHhhHHHHHHHHHHH-HhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHH
Q psy9204         179 LLIMRPTTQAIVALTFAQ-YAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMS-VSWAMQVQTLFTVGKLVALFG  252 (265)
Q Consensus       179 ~l~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~g-vk~~~~i~~v~~~~~i~~~~~  252 (265)
                      .+ . ....+.+..+.+. .+.+.    ++.|.|...   ++++....+...++ +|..-+++.+.+.+.++.+.+
T Consensus        89 if-~-lf~~~vVM~AGags~~~e~----~~lP~wiGa---li~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~  155 (349)
T COG3949          89 IF-F-LFSTAVVMLAGAGSLLEEM----FGLPYWIGA---LIIILLVLILLFLGRVEGIITVNGIITPFLIIILVL  155 (349)
T ss_pred             HH-H-HHHHHHHHhccchhHHHHH----hCccHHHHH---HHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHH
Confidence            55 2 3334444333333 44432    334544432   33334444444455 777777777777777666433

>PRK12488 acetate permease; Provisional

Probab=92.47  E-value=11  Score=36.61  Aligned_cols=163  Identities=10%  Similarity=-0.023  Sum_probs=82.6

Q ss_pred             cccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHH-HHHHHHHhccccccCCchHHhHHHHh
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTI-GALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~-~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      -.|+++.+..-....++..+...+..........|-.+   +.+.++..+..+ ..+.+++--.+.. .-..+.|.+++|
T Consensus        65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~---~~~~~g~~~g~~~~~~~~a~~lr~~g-~~T~~d~l~~Rf  140 (549)
T PRK12488         65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG---LLYALGVLAGWPIILFLIAERLRNLG-KYTFADVVSYRL  140 (549)
T ss_pred             eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHc
Confidence            35678888776665665555444443333333334221   111222222221 2222333222222 234677888899


Q ss_pred             C-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         167 G-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       167 g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      + |....+.+....+ .............+..+.. ++ +  .+.+..  +.+..++...+.-.-|.|...+.+.+=.++
T Consensus       141 ~s~~~r~laai~~i~-~~~~yl~~q~~g~g~il~~-l~-g--i~~~~~--iii~~~i~~~Yt~~GGm~av~~td~iQ~~i  213 (549)
T PRK12488        141 AQGPVRLTAAFGTLT-VVLMYLVAQMVGAGKLIEL-LF-G--ISYLYA--VVIVGALMVLYVTFGGMLATTWVQIIKAVL  213 (549)
T ss_pred             CCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hh-C--CCHHHH--HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            8 5576666665554 3334444555555555553 32 2  232222  222333444555577888888888877777


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      .++..++..+..+.+.
T Consensus       214 m~~~~i~~~~~~l~~~  229 (549)
T PRK12488        214 LLSGTSFMAFMVLKHF  229 (549)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7776666555555444

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=92.21  E-value=11  Score=36.04  Aligned_cols=29  Identities=17%  Similarity=0.167  Sum_probs=25.9

Q ss_pred             HHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          54 SLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        54 ~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ...+....|+|.||+....+.||.|||+|
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP~r  225 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENPGR  225 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCCcc
Confidence            34666779999999999999999999998

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=91.98  E-value=4.9  Score=37.01  Aligned_cols=161  Identities=12%  Similarity=0.037  Sum_probs=72.1

Q ss_pred             ccccchhhhHHhhhccccceeeecc-hHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204          89 GQRLVRLEGVSIIVGCIIGSGIFVS-PAGVLAETQSVGL-SIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        89 ~r~l~~~~~~~l~i~~vig~gi~~~-~~~~~~~~g~~~~-~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      .|+++.+.......++..+...+.. ++... ..|-.+. ..+++.++   ..+..+.++.--. ..+.-....|.+++|
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y-~~G~~~~~~~~~~~~~---~~~~~~~~~~~~r-~~~~~T~~e~~~~Ry   79 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAY-SYGISGLWYAIGYAIG---FLLFALFFAPRLR-RSGAVTIPEYLEKRY   79 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHHHH-HT-GGGGHHHHHHHHH---HHHHHHHTHHHHH-HTT--SHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeccccchh---HHHHHHHHHHhhc-ccchhhhhhhhhhhc
Confidence            4677777655555555444443333 44433 3342211 11112222   1222222222222 223445789999999


Q ss_pred             Cchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9204         167 GELP--AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTV  244 (265)
Q Consensus       167 g~~~--gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~  244 (265)
                      |+..  ..+......+ ......+......+..+.. +.+ .  |..  ..+.+..+++..+...-|.|...+.+.+-.+
T Consensus        80 g~~~~~~~~~~i~~i~-~~~~~~~~q~~~~~~~~~~-~~g-i--~~~--~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~  152 (406)
T PF00474_consen   80 GSKALLRILAAIIIIV-FMIPYLAAQLVGGGALLSV-LFG-I--PYN--TAILIVGVIVIIYTFFGGLRAVAWTDFIQGV  152 (406)
T ss_dssp             -HHH-HHHHHHHHHHH-HHHTHHHHHHHHHHHHHHH-HTT-----HH--HHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred             CCchhhhhhcccccch-hhhhhhhccccccccchhh-ccc-h--hhh--HHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence            9988  4444333333 4445566666666666664 332 2  221  2222333444456667788888877777777


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy9204         245 GKLVALFGIIAAGIGYL  261 (265)
Q Consensus       245 ~~i~~~~~~ii~g~~~~  261 (265)
                      +.++..+++.+..+...
T Consensus       153 i~~~~~~~~~~~~~~~~  169 (406)
T PF00474_consen  153 IMIIGAIVVLIFVLSAV  169 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchhc
Confidence            77666666665555443

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=91.74  E-value=12  Score=35.47  Aligned_cols=106  Identities=10%  Similarity=-0.059  Sum_probs=58.3

Q ss_pred             HHHhccccccCCchHHhHHHHhCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHH
Q psy9204         145 YAELGTCISRSGGDYAYILVAFGEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCV  223 (265)
Q Consensus       145 ~aEl~s~~P~~GG~y~~~~~~~g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~  223 (265)
                      +.++.++. +.-....+.+++||+. ...+.+....+ ......+......+..+.. +. +.  |.+..  +.+..+++
T Consensus        98 ~~~~~r~~-~~~T~~e~l~~Ryg~~~~~~~~~i~~~~-~~~~~~~~ql~~~g~~l~~-~~-gi--~~~~~--iii~~~iv  169 (483)
T PRK09442         98 FAILARKY-NAVTLNDMLRARYQSRLLVWLASLSLLV-FFFAAMTAQFIGGARLLET-AT-GI--SYETG--LLIFGITV  169 (483)
T ss_pred             HHHHHHHc-CCccHHHHHHHHhCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hh-CC--CHHHH--HHHHHHHH
Confidence            44444444 3445788999999865 44455444333 3334445555555555554 22 22  22222  22223344


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         224 LTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGI  258 (265)
Q Consensus       224 ~~~in~~gvk~~~~i~~v~~~~~i~~~~~~ii~g~  258 (265)
                      +.+....|.|...+.+.+-.++.++..+++.+..+
T Consensus       170 ~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~  204 (483)
T PRK09442        170 ALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVI  204 (483)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777888887777777776666655544443

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=91.61  E-value=11  Score=34.74  Aligned_cols=98  Identities=11%  Similarity=-0.095  Sum_probs=62.7

Q ss_pred             hHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy9204         158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQ  237 (265)
Q Consensus       158 ~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~  237 (265)
                      +....|..||++-+.+......+ ......+.++...++.+........+....  .....++.++......+|.|...|
T Consensus        60 ~~v~sR~~FG~~Gs~~~~~l~~i-~~igW~~v~~~~gg~~l~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~G~~~i~~  136 (386)
T TIGR02358        60 AMGSLKLSLGSKGSVLPSLLNLL-QLVGWTAVMIIVGAKAASLLGGRLFGEESP--MLWILIVGILVTLWLLSGPLAFVW  136 (386)
T ss_pred             HHHHHHHHHccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788999888888877777 566777777777777666432111111111  111223334566677899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy9204         238 VQTLFTVGKLVALFGIIAAGI  258 (265)
Q Consensus       238 i~~v~~~~~i~~~~~~ii~g~  258 (265)
                      ++++...+..+..+...+..+
T Consensus       137 ~~~~~~~~~~i~~~~~~~~~~  157 (386)
T TIGR02358       137 LNNWSVWLLLIATLWLLVVVF  157 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998888777766554433

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=90.52  E-value=17  Score=34.81  Aligned_cols=98  Identities=14%  Similarity=-0.085  Sum_probs=52.7

Q ss_pred             CCchHHhHHHHhCc---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhh
Q psy9204         155 SGGDYAYILVAFGE---LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMS  231 (265)
Q Consensus       155 ~GG~y~~~~~~~g~---~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~g  231 (265)
                      .-..+.|.+++||+   ....+.+....+ ......+......+..+.. +++ .  +.  ...+.+..++...+...-|
T Consensus       107 ~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~-~~~~~~~~ql~~~~~~l~~-~~g-i--~~--~~~iii~~~iv~iYt~~GG  179 (502)
T PRK15419        107 ALTLPDYFTGRFEDKSRILRIISALVILL-FFTIYCASGIVAGARLFES-TFG-M--SY--ETALWAGAAATILYTFIGG  179 (502)
T ss_pred             ceeHHHHHHHHhCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC-C--CH--HHHHHHHHHHHHHHHHhhh
Confidence            34578999999985   344333333332 2223334444444445443 222 2  22  2233333445666677778


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         232 VSWAMQVQTLFTVGKLVALFGIIAAGIG  259 (265)
Q Consensus       232 vk~~~~i~~v~~~~~i~~~~~~ii~g~~  259 (265)
                      .|...+.+.+=.++.++..+++.+..+.
T Consensus       180 l~aV~~TD~iQ~~imi~g~i~~~~~~~~  207 (502)
T PRK15419        180 FLAVSWTDTVQASLMIFALILTPVIVII  207 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777777777766655555444443

>PRK10484 putative transporter; Provisional

Probab=89.63  E-value=20  Score=34.44  Aligned_cols=169  Identities=13%  Similarity=0.020  Sum_probs=73.5

Q ss_pred             cccccchhhhHHhhhccccceeeec-chHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhccccccCCchHHhHHHH
Q psy9204          88 TGQRLVRLEGVSIIVGCIIGSGIFV-SPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVA  165 (265)
Q Consensus        88 l~r~l~~~~~~~l~i~~vig~gi~~-~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s~~P~~GG~y~~~~~~  165 (265)
                      -.|+++.+.......++.++...+. .++..+. .|-   ....|.....+. .+.+..++.--.+. ..-..+.|.+++
T Consensus        36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~---~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~R  110 (523)
T PRK10484         36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGM---SVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEER  110 (523)
T ss_pred             cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCH---HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHh
Confidence            4678888765555545544433333 3343332 232   212222222222 22333333221222 233468899999


Q ss_pred             hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc-CC-CCCCchHHHHHHHH--HHHHHHHHHHhhhhhHHHHHHHH
Q psy9204         166 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-FP-DSELPDRAVLLLAA--ACLCVLTAVNCMSVSWAMQVQTL  241 (265)
Q Consensus       166 ~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~-~~-~~~~~~~~~~~i~~--~~l~~~~~in~~gvk~~~~i~~v  241 (265)
                      ||+......+....+.......+......+..+...+ .+ ....+......+..  +.++...+...-|.|...+.+.+
T Consensus       111 yg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~i  190 (523)
T PRK10484        111 YDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTI  190 (523)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            9987655544443331111111211112222222111 00 01112222222211  12334556666778888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy9204         242 FTVGKLVALFGIIAAGIGYL  261 (265)
Q Consensus       242 ~~~~~i~~~~~~ii~g~~~~  261 (265)
                      =.++.++..+++.+.++...
T Consensus       191 Q~vim~i~~iiv~~~~l~~~  210 (523)
T PRK10484        191 NGIGLLIGGLLVPVFGLIAL  210 (523)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77776666555544444443

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=89.37  E-value=22  Score=34.49  Aligned_cols=96  Identities=9%  Similarity=-0.109  Sum_probs=51.9

Q ss_pred             hHHhHHHHhC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy9204         158 DYAYILVAFG-ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAM  236 (265)
Q Consensus       158 ~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~  236 (265)
                      ...|.+++|+ |....+.+....+ .............+..+.. +++   .+.+..  +.+..++...+.-.-|.|...
T Consensus       132 ~~d~l~~Rf~s~~~r~l~ai~~i~-~~~~yl~~ql~g~g~il~~-~~g---i~~~~~--iii~~~i~~~Yt~~GGm~av~  204 (549)
T TIGR02711       132 FADVASYRLKQRPIRILSACGSLV-VVALYLIAQMVGAGKLIEL-LFG---LNYHVA--VVLVGILMVMYVLFGGMLATT  204 (549)
T ss_pred             HHHHHHHHcCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHC---CCHHHH--HHHHHHHHHHHHHhhhhHHHH
Confidence            5667778887 4455655554444 2333344444444444443 322   232222  223333445556667888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         237 QVQTLFTVGKLVALFGIIAAGIGY  260 (265)
Q Consensus       237 ~i~~v~~~~~i~~~~~~ii~g~~~  260 (265)
                      +.+.+=.++.++..+++.+..+..
T Consensus       205 ~td~iQ~~im~~g~i~~~~~~~~~  228 (549)
T TIGR02711       205 WVQIIKAVLLLFGATFMAFMVMKS  228 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777777766665554444433

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=89.25  E-value=17  Score=33.03  Aligned_cols=63  Identities=22%  Similarity=0.152  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhcccccc--CCchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy9204         136 LLSTIGALCYAELGTCISR--SGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI  199 (265)
Q Consensus       136 l~~~~~a~~~aEl~s~~P~--~GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~  199 (265)
                      +++.+..+.+-|++.++-.  ..+...-.++.+||.+++...-...+ ........+....+.-+.
T Consensus        20 ll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l-~~~~~~~~~~~g~a~al~   84 (358)
T PF01566_consen   20 LLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFL-ANIATQAAEIIGIAIALN   84 (358)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            3567777888888888864  34456667788888887776655444 333333444444443333

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>KOG1286|consensus

Probab=89.13  E-value=4.7  Score=39.17  Aligned_cols=31  Identities=16%  Similarity=0.382  Sum_probs=27.6

Q ss_pred             HHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          52 KISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        52 ~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ++..++..+.|+|.|-+.+....||.|||+|
T Consensus       233 Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k  263 (554)
T KOG1286|consen  233 GVLSGAATAFFSFIGFELVATTAEEAKNPRK  263 (554)
T ss_pred             eeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence            4555777888999999999999999999998

>PLN03074 auxin influx permease; Provisional

Probab=88.66  E-value=19  Score=34.28  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=43.4

Q ss_pred             cchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHH----HHHHhccccccCCchH-----Hh-
Q psy9204          92 LVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CYAELGTCISRSGGDY-----AY-  161 (265)
Q Consensus        92 l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~----~~aEl~s~~P~~GG~y-----~~-  161 (265)
                      .+..+...-.....+|.|+..+|... ...|-. ..++..++.+++..-.+.    ++-|...+.|+.+-.|     .| 
T Consensus        46 ~s~~~~~~~l~~~~vG~GILaLP~Af-~~~G~v-~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~  123 (473)
T PLN03074         46 GSVYDAWFSCASNQVAQVLLTLPYSF-SQLGML-SGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF  123 (473)
T ss_pred             chHHHHHHHHHHHHHhHHHHhHHHHH-HHccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence            34444444456667788888888663 343422 222222333433333333    4456676666644222     22 


Q ss_pred             --HHHHhCchhHHHHHHHH
Q psy9204         162 --ILVAFGELPAFLRLWVA  178 (265)
Q Consensus       162 --~~~~~g~~~gf~~gw~~  178 (265)
                        ..+.+||.+..+.....
T Consensus       124 e~~~~~~G~~~~~~~~~~~  142 (473)
T PLN03074        124 EVLDGLLGPYWKNVGLAFN  142 (473)
T ss_pred             HHHHHhcChhHHHHHHHHH
Confidence              23567888776664433

>PRK00701 manganese transport protein MntH; Reviewed

Probab=88.52  E-value=22  Score=33.48  Aligned_cols=40  Identities=15%  Similarity=0.103  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhcccccc-CC-chHHhHHHHhCchhHHHHH
Q psy9204         136 LLSTIGALCYAELGTCISR-SG-GDYAYILVAFGELPAFLRL  175 (265)
Q Consensus       136 l~~~~~a~~~aEl~s~~P~-~G-G~y~~~~~~~g~~~gf~~g  175 (265)
                      +++.+....+-|++.++-. +| +...-.+++++|++++...
T Consensus        72 lls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~  113 (439)
T PRK00701         72 LLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLW  113 (439)
T ss_pred             HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHH
Confidence            4566677788888888764 33 6788888999998877653

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=86.08  E-value=0.65  Score=43.91  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      .+..++..++..+.++|.|.+......||.|||+|
T Consensus       197 ~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k  231 (478)
T PF00324_consen  197 GGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK  231 (478)
T ss_pred             cchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence            45778999999999999999999999999999998

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=85.74  E-value=4  Score=38.35  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=32.2

Q ss_pred             CChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          48 YDITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        48 ~~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ..+.++-.++.-+.|||.|=+-...-..|.|||++
T Consensus       200 ~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k  234 (462)
T COG1113         200 NGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK  234 (462)
T ss_pred             CchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh
Confidence            35778889999999999999999999999999998

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=85.54  E-value=34  Score=32.53  Aligned_cols=97  Identities=8%  Similarity=-0.078  Sum_probs=51.1

Q ss_pred             CchHHhHHHHhCch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q psy9204         156 GGDYAYILVAFGEL---PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSV  232 (265)
Q Consensus       156 GG~y~~~~~~~g~~---~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gv  232 (265)
                      -..+.|.+++||+.   ...+.+-...+ ......+......+..+.. +.+   .+.+.  .+.+..++.+.+...-|.
T Consensus       104 ~T~~e~l~~Ryg~~~~~~~~~~ai~~~~-~~~~~~~~~l~~~~~~l~~-~~g---i~~~~--~iii~~~i~~~Yt~~GGl  176 (487)
T TIGR02121       104 ITLPDFFENRFNDKSRLLRIISALIILV-FFTIYTSSGLVAGGKLFES-TFG---LDYKT--GLLIGALIIVIYTFFGGF  176 (487)
T ss_pred             ccHHHHHHHHhCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhC---ccHHH--HHHHHHHHHHHHHHhhhH
Confidence            34689999999953   33333332222 2222334444444444443 222   22222  222333455666777788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9204         233 SWAMQVQTLFTVGKLVALFGIIAAGIG  259 (265)
Q Consensus       233 k~~~~i~~v~~~~~i~~~~~~ii~g~~  259 (265)
                      |...+.+.+=.++.++..+++.+..+.
T Consensus       177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~  203 (487)
T TIGR02121       177 LAVSWTDFVQGLLMFFALVLVPIVALF  203 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777777666666655544444433

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	3e-24
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	2e-17
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	3e-10

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score =  100 bits (250), Expect = 3e-24
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 98  VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG 157
             ++ G I+GSG+F+ PA +     + G++I  W V  + +   ++ YA++       GG
Sbjct: 16  TLMVSGAIMGSGVFLLPANL---ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGG 72

Query: 158 DYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLA 217
            YAY    FG    +    +  L       A+V +      +  FFP  + P   + +  
Sbjct: 73  SYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVG--YLSYFFPILKDP-WVLTITC 129

Query: 218 AACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGY 260
              L +   +N +      +VQ + TV  L+ + GI   G  +
Sbjct: 130 VVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFW 172

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 98  VSIIVGCIIGSGIFVSPAGVLAET--QSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS 155
           VS+ VG +IG+ IF    GV A+   +++  + ++    G+ + + A  Y +LG  I  +
Sbjct: 14  VSMAVGVMIGASIFSIF-GVGAKIAGRNLPETFIL---SGIYALLVAYSYTKLGAKIVSN 69

Query: 156 GGDYAYILVAFGE-LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVL 214
            G  A+I  A G+ +         L +    + A+ A  FA Y +     ++ +    + 
Sbjct: 70  AGPIAFIHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLI--NAPINTFNIA 126

Query: 215 LLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKLVALFGIIAAGIGYL 261
           +     +   TA+N        + +    + KL+ L   I AG+  +
Sbjct: 127 ITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI 173

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 6/169 (3%)

Query: 100 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLLSTI-GALCYAELGTCIS-RSG 156
           +    I  S +          T   G S+V    + G+L  I   LC AE+ T      G
Sbjct: 16  LGFFAITASMVMAVYEYPTFATS--GFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEG 73

Query: 157 GDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLL 216
           G +A++    G    F  +    L +      ++       +    +P          + 
Sbjct: 74  GVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIA 133

Query: 217 AAACLCVLTAVNCMSVSWAMQVQTL-FTVGKLVALFGIIAAGIGYLGIG 264
           A   L  L         +  ++  + F  G L+  F +IA    YL  G
Sbjct: 134 ALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSG 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.83
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.82
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.75
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	97.52
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	97.24
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	95.2
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	93.54
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	92.47
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	92.36

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.83  E-value=4e-20  Score=170.46  Aligned_cols=169  Identities=21%  Similarity=0.312  Sum_probs=145.9

Q ss_pred             ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204          87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      +.||+++.++..++.++.++|+|++..|+.+. .+|+  ..+++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~-~~G~--~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA-STGG--IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH-HHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH-Hhhh--HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            46789999999999999999999999988754 4454  36678999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy9204         167 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGK  246 (265)
Q Consensus       167 g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~  246 (265)
                      ||.+|++.+|.+++ .+....+.....+++++.. ++|..+ ++++..+++++++++++.+|++|+|..+|++.+.+.++
T Consensus        82 G~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~  158 (445)
T 3l1l_A           82 GPFLGYQTNVLYWL-ACWIGNIAMVVIGVGYLSY-FFPILK-DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA  158 (445)
T ss_dssp             CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT-TCGGGG-SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HCcccc-ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            99999999999999 6677777888888888874 445432 34677888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy9204         247 LVALFGIIAAGIGYL  261 (265)
Q Consensus       247 i~~~~~~ii~g~~~~  261 (265)
                      ++.++++++.++.+.
T Consensus       159 i~~~~~~~i~~~~~~  173 (445)
T 3l1l_A          159 LIPIVGIAVFGWFWF  173 (445)
T ss_dssp             HHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999988888776543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.82  E-value=7.4e-19  Score=162.04  Aligned_cols=170  Identities=21%  Similarity=0.229  Sum_probs=148.2

Q ss_pred             ccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHh
Q psy9204          87 VTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  166 (265)
Q Consensus        87 ~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~  166 (265)
                      +.||+++.++..+++++.++|+|++..++.....+|+  ..+++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus         3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~--~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~   80 (444)
T 3gia_A            3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR--NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAI   80 (444)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG--GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred             ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence            3578999999999999999999999999887777665  46678999999999999999999999999999999999999


Q ss_pred             Cch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9204         167 GEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVG  245 (265)
Q Consensus       167 g~~-~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~  245 (265)
                      ||. .+...+|.+++ .+....+..+..+++++.. .++. ..++++..+++.+++++++.+|++|+|..+|++.+.+.+
T Consensus        81 G~~~~~g~~~~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~  157 (444)
T 3gia_A           81 GDNIITGALSILLWM-SYVISIALFAKGFAGYFLP-LINA-PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLV  157 (444)
T ss_dssp             CSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HTTC-CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCC-CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            996 35556899988 7778888899999999886 4443 334566778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy9204         246 KLVALFGIIAAGIGYL  261 (265)
Q Consensus       246 ~i~~~~~~ii~g~~~~  261 (265)
                      |++.++++++.++...
T Consensus       158 ~i~~~~~~ii~~~~~~  173 (444)
T 3gia_A          158 KLLILGLFIFAGLITI  173 (444)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999888764

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.75  E-value=1.2e-17  Score=156.68  Aligned_cols=169  Identities=16%  Similarity=0.170  Sum_probs=124.5

Q ss_pred             cccccccchhhhHHhhhccccceeeecchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhcc--ccccCCchHHhH
Q psy9204          86 PVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGT--CISRSGGDYAYI  162 (265)
Q Consensus        86 ~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g~~~~~i~~~~i~~l~~-~~~a~~~aEl~s--~~P~~GG~y~~~  162 (265)
                      +++||+++.+++++++++.+++  ++..+.  ....|+  ..++.|++++++. ++.+++++|+++  ++| +||.|+|+
T Consensus         7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~--~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~   79 (511)
T 4djk_A            7 TGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGF--SLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWV   79 (511)
T ss_dssp             -----CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTT--HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHH
T ss_pred             CccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhH
Confidence            4688999999999999999875  333332  233332  2333445555554 469999999999  999 99999999


Q ss_pred             HHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc-CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy9204         163 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTL  241 (265)
Q Consensus       163 ~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v  241 (265)
                      ++.+||++|++.+|.+++ .+....+......+.++...+ .|+.+.++|+..+++++++++++.+|++|+|..+|++++
T Consensus        80 ~~~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~  158 (511)
T 4djk_A           80 SNTLGPRWGFAAISFGYL-QIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKV  158 (511)
T ss_dssp             HHHHCHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHH
T ss_pred             HhhcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            999999999999999999 666666666667777765432 456666678888999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhh
Q psy9204         242 FTVGKLV-ALFGIIAAGIGYLG  262 (265)
Q Consensus       242 ~~~~~i~-~~~~~ii~g~~~~~  262 (265)
                      .+.++++ .++++++.++....
T Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~  180 (511)
T 4djk_A          159 GFFAGILLPAFILIALAAIYLH  180 (511)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9888654 46667777776543

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=97.52  E-value=0.0035  Score=58.49  Aligned_cols=166  Identities=10%  Similarity=-0.043  Sum_probs=95.5

Q ss_pred             CccccccccchhhhHHhhhccccceeeecchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhccccccCCc-hHHh
Q psy9204          84 VLPVTGQRLVRLEGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAY  161 (265)
Q Consensus        84 ~~~~l~r~l~~~~~~~l~i~~vig~gi~~~~~~~~~~~g-~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG-~y~~  161 (265)
                      |.|+-+|+.+.++...+=++.....+.+....... . | +...++++-+++.++..+.....+.++   |+.|- +...
T Consensus        19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~-GLs~~~a~lai~lG~li~~~~~~l~~~~G---~~~Gl~~~v~   93 (501)
T 2jln_A           19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S-SFQVWQVIVAIAAGCTIAVILLFFTQSAA---IRWGINFTVA   93 (501)
T ss_dssp             CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T-TSCHHHHHHHHHHHHHHHHHHHHHHTHHH---HHHCCCHHHH
T ss_pred             CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c-CcCHHHHHHHHHHHHHHHHHHHHHHhHHH---hhcCCChhhh
Confidence            34556677888888877666654444333322222 2 3 222233333333333333333333333   33333 4446


Q ss_pred             HHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhc---CCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy9204         162 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQV  238 (265)
Q Consensus       162 ~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~---~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i  238 (265)
                      .+..||++.+.+......+ ......+.+....++.+...+   + +.+ +   ..+..+++.++...+.++|.|...++
T Consensus        94 ~R~~FG~~Gs~i~~ll~~i-~~igw~~v~~~~gg~al~~~~~~~~-g~~-~---~~v~~~i~~~l~~~~~~~G~~~i~~~  167 (501)
T 2jln_A           94 ARMPFGIRGSLIPITLKAL-LSLFWFGFQTWLGALALDEITRLLT-GFT-N---LPLWIVIFGAIQVVTTFYGITFIRWM  167 (501)
T ss_dssp             TTTTSCTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCC-C---HHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             hHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc-Ccc-h---HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            7788999988888877766 455555666655555554322   1 222 1   12333445556777889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy9204         239 QTLFTVGKLVALFGIIAAGIGY  260 (265)
Q Consensus       239 ~~v~~~~~i~~~~~~ii~g~~~  260 (265)
                      +.+...+.++.++.+.+..+..
T Consensus       168 ~~~~~p~~~i~~i~~~~~~l~~  189 (501)
T 2jln_A          168 NVFASPVLLAMGVYMVYLMLDG  189 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988888777766655443

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=97.24  E-value=0.0086  Score=54.20  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=28.7

Q ss_pred             ChhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          49 DITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        49 ~~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +..++..++..+.|+|.||+......||.|||+|
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r  222 (445)
T 3l1l_A          189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR  222 (445)
T ss_dssp             ----HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence            3567888999999999999999999999999987

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=95.20  E-value=0.83  Score=41.78  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=24.8

Q ss_pred             HHHhhhhccCCcccchhhhccccCCCC
Q psy9204          56 ALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        56 a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      ++..+.|+|.||+....+.||.|||+|
T Consensus       206 ~~~~~~~a~~G~e~~~~~a~E~k~P~k  232 (511)
T 4djk_A          206 VFVAFILSYMGVEASATHVNEMSNPGR  232 (511)
T ss_dssp             THHHHHHHHTTGGGGTGGGSSSSCCTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHhccCccc
Confidence            466779999999999999999999998

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=93.54  E-value=0.75  Score=41.23  Aligned_cols=33  Identities=9%  Similarity=0.293  Sum_probs=29.3

Q ss_pred             hhHHHHHHHhhhhccCCcccchhhhccccCCCC
Q psy9204          50 ITKISLALYSGLFAFGGWNYLNFVVDELQDPYN   82 (265)
Q Consensus        50 ~~~~~~a~~~~~~~y~Gw~~~n~v~~e~k~p~~   82 (265)
                      +.++..++..+.|+|.|++......||.|||+|
T Consensus       187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r  219 (444)
T 3gia_A          187 VSGMIFASAIFFLSYMGFGVITNASEHIENPKK  219 (444)
T ss_dssp             HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc
Confidence            446777888889999999999999999999987

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=92.47  E-value=4.9  Score=37.86  Aligned_cols=102  Identities=7%  Similarity=-0.089  Sum_probs=53.7

Q ss_pred             cCCchHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q psy9204         154 RSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVS  233 (265)
Q Consensus       154 ~~GG~y~~~~~~~g~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk  233 (265)
                      +.-..+.|.+++||+....+......+.......+......+..+.. +.+   .+.+.  .+.+..++...+....|.|
T Consensus       110 ~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~-~~G---i~~~~--~i~i~~~i~~~Yt~~GGl~  183 (593)
T 2xq2_A          110 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALET-ILG---IPLMY--SILGLALFALVYSIYGGLS  183 (593)
T ss_dssp             TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHC---CCHHH--HHHHHHHHHHHHHHTTC--
T ss_pred             CCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC---ccHHH--HHHHHHHHHHHHHHhcchH
Confidence            34457999999999987766654433312222333333344444443 222   12222  2222333445566667788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9204         234 WAMQVQTLFTVGKLVALFGIIAAGIGYL  261 (265)
Q Consensus       234 ~~~~i~~v~~~~~i~~~~~~ii~g~~~~  261 (265)
                      ...+.+.+=.+++++..+++.+.++...
T Consensus       184 av~~TD~iQ~iiml~~~l~v~~~~l~~~  211 (593)
T 2xq2_A          184 AVVWTDVIQVFFLVLGGFMTTYMAVSFI  211 (593)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7777777767777766666655555443

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=92.36  E-value=2.4  Score=39.38  Aligned_cols=163  Identities=8%  Similarity=-0.036  Sum_probs=71.8

Q ss_pred             ccccchhhhHHhhhccccceeeec-chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccCCchHHhHHHHhC
Q psy9204          89 GQRLVRLEGVSIIVGCIIGSGIFV-SPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG  167 (265)
Q Consensus        89 ~r~l~~~~~~~l~i~~vig~gi~~-~~~~~~~~~g~~~~~i~~~~i~~l~~~~~a~~~aEl~s~~P~~GG~y~~~~~~~g  167 (265)
                      .|+++.+.......++.++...+. .++..+. .|-.. ....|.. .+...+.+..+...-.+. +.-..+.|.+++||
T Consensus        19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~-~~~~~~~-~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg   94 (530)
T 3dh4_A           19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAI-ASYEWMS-AITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN   94 (530)
T ss_dssp             CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGG-HHHHHHH-HHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHH-HHHHHHH-HHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcC
Confidence            567777776555555544433333 3444333 34221 1122221 112222233333322222 34457899999999


Q ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9204         168 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCVLTAVNCMSVSWAMQVQTLFTVGKL  247 (265)
Q Consensus       168 ~~~gf~~gw~~~l~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~~in~~gvk~~~~i~~v~~~~~i  247 (265)
                      +....+.+....+.+.....+......+..+.. +++   .+.+..  +.+..++...+....|.|...+.+.+-.++.+
T Consensus        95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~-~~G---i~~~~~--i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~  168 (530)
T 3dh4_A           95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALET-ILG---IPLMYS--ILGLALFALVYSIYGGLSAVVWTDVIQVFFLV  168 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTT---CCHHHH--HHHHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC---CCHHHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            987776665443312222333333333444443 322   222222  22222223333444567766666666666666


Q ss_pred             HHHHHHHHHHHHHh
Q psy9204         248 VALFGIIAAGIGYL  261 (265)
Q Consensus       248 ~~~~~~ii~g~~~~  261 (265)
                      +..+++.+.++...
T Consensus       169 ~g~~~v~~~~~~~~  182 (530)
T 3dh4_A          169 LGGFMTTYMAVSFI  182 (530)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            65555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00