Psyllid ID: psy9209
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BGZ4 | 597 | Cell division cycle prote | yes | N/A | 0.702 | 0.410 | 0.504 | 4e-66 | |
| A1A4R8 | 597 | Cell division cycle prote | yes | N/A | 0.702 | 0.410 | 0.504 | 7e-66 | |
| Q9UJX2 | 597 | Cell division cycle prote | yes | N/A | 0.702 | 0.410 | 0.5 | 1e-65 | |
| Q86B11 | 592 | Anaphase-promoting comple | yes | N/A | 0.573 | 0.337 | 0.461 | 3e-43 | |
| O94556 | 565 | Anaphase-promoting comple | yes | N/A | 0.590 | 0.364 | 0.409 | 8e-41 | |
| Q9STS3 | 579 | Anaphase-promoting comple | yes | N/A | 0.581 | 0.350 | 0.427 | 4e-40 | |
| P16522 | 626 | Anaphase-promoting comple | yes | N/A | 0.590 | 0.329 | 0.356 | 8e-30 | |
| A2A6Q5 | 825 | Cell division cycle prote | no | N/A | 0.306 | 0.129 | 0.327 | 5e-13 | |
| Q4V8A2 | 824 | Cell division cycle prote | no | N/A | 0.306 | 0.129 | 0.327 | 5e-13 | |
| A7Z061 | 825 | Cell division cycle prote | no | N/A | 0.306 | 0.129 | 0.327 | 6e-13 |
| >sp|Q8BGZ4|CDC23_MOUSE Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/248 (50%), Positives = 163/248 (65%), Gaps = 3/248 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD + K
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKK 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGETVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ + L P S ++ P
Sbjct: 529 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPTSDTPGTFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Mus musculus (taxid: 10090) |
| >sp|A1A4R8|CDC23_BOVIN Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 125/248 (50%), Positives = 163/248 (65%), Gaps = 3/248 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ S + L P S ++ P
Sbjct: 529 ASACAQKCCAFNDTREEGKALLRQILQLRNQGETPSTEIPAPFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Bos taurus (taxid: 9913) |
| >sp|Q9UJX2|CDC23_HUMAN Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/248 (50%), Positives = 163/248 (65%), Gaps = 3/248 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ + + L P S ++ P
Sbjct: 529 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Homo sapiens (taxid: 9606) |
| >sp|Q86B11|CDC23_DICDI Anaphase-promoting complex subunit 8 OS=Dictyostelium discoideum GN=anapc8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 129/208 (62%), Gaps = 8/208 (3%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+LYFQRALKLN YL WTL+GHE++E+KN +AAI YR+A++IN DYRAWYGLGQT
Sbjct: 377 KAILYFQRALKLNDRYLSAWTLIGHEFLEIKNVSAAINAYRKAVDINPRDYRAWYGLGQT 436
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y++L+LP Y LYY+K+A +RP DPRM A G +E E+I EA+KCY ++ D +
Sbjct: 437 YQLLKLPLYSLYYFKKATTLRPYDPRMWCAAGGCYEFIERIPEAIKCYERAEENYDRERV 496
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG---FFAFKYLANHHLKANN 270
A+ KLAKLY ++ E AA F K + + +K G A +LAN + N
Sbjct: 497 AINKLAKLYQEIQNNEKAA-----FYYKKNLYYCDQEKIDGQEIIDALLFLANFYKNQNQ 551
Query: 271 LDTAYKCAQKCLQHEETAEEAKSLLRSI 298
+ C + EEAKS+LR I
Sbjct: 552 TQSEQYCLRLLDYAGPEKEEAKSILREI 579
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94556|APC8_SCHPO Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 129/210 (61%), Gaps = 4/210 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV YF+RAL+LN NYL WTL+GHEY+E+KNT+AAI+ YR A+++N DYRAWYGLGQT
Sbjct: 356 KAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGLGQT 415
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YE+L + +Y LYY+++A +RP D RM ALG +EK ++ EA+K Y ++ +
Sbjct: 416 YEVLDMHFYALYYFQRATALRPYDQRMWQALGNCYEKIDRPQEAIKSYKRALLGSQTNSS 475
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
L +L LY++L + +AA ++ + + +T +P A +LA L N
Sbjct: 476 ILVRLGNLYEELQDLNSAASMYKQCIKTEETEISPE----TIKARIWLARWELGKKNYRE 531
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 303
A + L + EEAK+LLR + + +
Sbjct: 532 AELYLSEVLNGDLELEEAKALLRELRSRME 561
|
Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Has a role in promoting metaphase to anaphase transition via the ubiquitination of specific mitotic substrates. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9STS3|CDC23_ARATH Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 130/208 (62%), Gaps = 5/208 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF+RALKLN YL WTL+GHEY+EMKNT AAI YR+A++IN DYRAWYGLGQ
Sbjct: 357 KAVMYFRRALKLNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPTDYRAWYGLGQA 416
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE--KISEAMKCYNKSRAIGDAD 211
YE++ +P+Y L+Y++++ PND R+ A+ + ++ ++ + EA+KCY ++ D +
Sbjct: 417 YEMMGMPFYALHYFRKSIFFLPNDSRLWIAMAKCYQTEQLYMLEEAIKCYKRAVNCTDTE 476
Query: 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271
G AL +LAKL+ KL E AA F + + ++D A + F A +LA H
Sbjct: 477 GIALNQLAKLHQKLGRNEEAAYYFEKDLERMD--AEGLEGPNMFEALVFLATHFKNHKKF 534
Query: 272 DTAYKCAQKCLQHEE-TAEEAKSLLRSI 298
+ A + L + E+AKSLLR I
Sbjct: 535 EEAEVYCTRLLDYSGPEKEKAKSLLRGI 562
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Arabidopsis thaliana (taxid: 3702) |
| >sp|P16522|CDC23_YEAST Anaphase-promoting complex subunit CDC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC23 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 120/216 (55%), Gaps = 10/216 (4%)
Query: 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
RQ E S ++YF+RAL L+ WTL+GHE++E+ N++AAI+CYR+A++I D++
Sbjct: 410 RQEHEKS---IMYFRRALTLDKKTTNAWTLMGHEFVELSNSHAAIECYRRAVDICPRDFK 466
Query: 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS- 204
AW+GLGQ Y +L + Y LYY+++A ++P D R+ LGE + K EA+KCY +S
Sbjct: 467 AWFGLGQAYALLDMHLYSLYYFQKACTLKPWDRRIWQVLGECYSKTGNKVEAIKCYKRSI 526
Query: 205 --RAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTF-AAPPDKTCGFFAFKYL 261
D + ++LA+LY++L + + M+ V + D+T A +L
Sbjct: 527 KASQTVDQNTSIYYRLAQLYEELEDLQECKKFMMKCVDVEELLEGIVTDETVK--ARLWL 584
Query: 262 ANHHLKANNLDTAYKCAQKCLQH-EETAEEAKSLLR 296
A +KA N AY A + EEA+ L R
Sbjct: 585 AIFEIKAGNYQLAYDYAMGVSSGTSQEIEEARMLAR 620
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|A2A6Q5|CDC27_MOUSE Cell division cycle protein 27 homolog OS=Mus musculus GN=Cdc27 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
A+ +FQRA++++PNY +TLLGHE++ + + A+ C+R AI +N Y AWYGLG Y
Sbjct: 587 AIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 646
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
++++A + P +L +G +K +A+ NK+ I
Sbjct: 647 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI 699
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Mus musculus (taxid: 10090) |
| >sp|Q4V8A2|CDC27_RAT Cell division cycle protein 27 homolog OS=Rattus norvegicus GN=Cdc27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
A+ +FQRA++++PNY +TLLGHE++ + + A+ C+R AI +N Y AWYGLG Y
Sbjct: 586 AIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 645
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
++++A + P +L +G +K +A+ NK+ I
Sbjct: 646 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI 698
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Rattus norvegicus (taxid: 10116) |
| >sp|A7Z061|CDC27_BOVIN Cell division cycle protein 27 homolog OS=Bos taurus GN=CDC27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
A+ +FQRA++++PNY +TLLGHE++ + + A+ C+R AI +N Y AWYGLG Y
Sbjct: 587 AIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 646
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
++++A + P +L +G +K +A+ NK+ I
Sbjct: 647 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI 699
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| 383864851 | 576 | PREDICTED: cell division cycle protein 2 | 0.702 | 0.425 | 0.566 | 5e-71 | |
| 332020096 | 586 | Cell division cycle protein 23-like prot | 0.702 | 0.418 | 0.554 | 6e-70 | |
| 307188076 | 575 | Cell division cycle protein 23-like prot | 0.644 | 0.391 | 0.589 | 4e-69 | |
| 307194572 | 576 | Cell division cycle protein 23-like prot | 0.702 | 0.425 | 0.546 | 5e-69 | |
| 380016481 | 575 | PREDICTED: cell division cycle protein 2 | 0.684 | 0.415 | 0.568 | 6e-69 | |
| 48138874 | 575 | PREDICTED: cell division cycle protein 2 | 0.684 | 0.415 | 0.568 | 7e-69 | |
| 156538665 | 579 | PREDICTED: cell division cycle protein 2 | 0.681 | 0.411 | 0.553 | 1e-68 | |
| 340709074 | 575 | PREDICTED: cell division cycle protein 2 | 0.699 | 0.424 | 0.558 | 5e-68 | |
| 350418970 | 575 | PREDICTED: cell division cycle protein 2 | 0.699 | 0.424 | 0.558 | 5e-68 | |
| 327265691 | 593 | PREDICTED: cell division cycle protein 2 | 0.704 | 0.414 | 0.510 | 3e-66 |
| >gi|383864851|ref|XP_003707891.1| PREDICTED: cell division cycle protein 23 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/249 (56%), Positives = 174/249 (69%), Gaps = 4/249 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF RALKLNP YL WTLLGHE+MEMKNTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 326 KAVMYFHRALKLNPQYLSAWTLLGHEFMEMKNTNGAIHSYRQAIEVNKRDYRAWYGLGQT 385
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYYKQA ++RP+D RM+ ALGEA+EKQ+KI +A+KCY K+ +GD +G
Sbjct: 386 YEILKMPFYALYYYKQAQLLRPHDSRMVLALGEAYEKQDKIQDALKCYYKACNVGDIEGM 445
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D F D+T A+KYL +HLK LD
Sbjct: 446 ALLKLATLYEKLGEHDHAAAAYTDFV--MDEF-RNADRTDLSHAYKYLTQYHLKREQLDQ 502
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV-PPSTRSSKFPA 332
A AQKCLQ +ET EEAK+LLR+IAQKR E +S +E DPV R+ P
Sbjct: 503 ANHYAQKCLQFDETKEEAKALLRTIAQKRVKVEETSMVVEDMNETDPVIEQGERTDATPG 562
Query: 333 NPAYPFATS 341
+ P S
Sbjct: 563 SQLSPMNLS 571
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332020096|gb|EGI60542.1| Cell division cycle protein 23-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 138/249 (55%), Positives = 174/249 (69%), Gaps = 4/249 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF RALK+NP YL WTLLGHE+MEMKNTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 336 KAVMYFHRALKMNPQYLSAWTLLGHEFMEMKNTNGAIHSYRQAIEVNRRDYRAWYGLGQT 395
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+YGLYYYKQA ++RP+D RM+ ALGEA+EKQ+KI +A+KCY K+ +GD +G
Sbjct: 396 YEILKMPFYGLYYYKQAQLLRPHDSRMVLALGEAYEKQDKIQDALKCYYKACNVGDIEGM 455
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D F + D+T A+KYL +HLK LD
Sbjct: 456 ALLKLATLYEKLGEHDHAAAAYSDFV--MDEFRS-VDRTELSHAYKYLTQYHLKKEQLDQ 512
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV-PPSTRSSKFPA 332
A AQKCL +ET EEAK LLR+IA+KR E +S ++ DPV R+ P
Sbjct: 513 ANHYAQKCLTFDETKEEAKVLLRTIAEKRVKVEETSMVVDDMNETDPVIEQRARTDATPG 572
Query: 333 NPAYPFATS 341
+ P S
Sbjct: 573 SQLSPMNLS 581
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307188076|gb|EFN72908.1| Cell division cycle protein 23-like protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 135/229 (58%), Positives = 170/229 (74%), Gaps = 4/229 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF RALK+NP YL WTLLGHE+MEMKNTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 324 KAVMYFHRALKMNPQYLSAWTLLGHEFMEMKNTNGAIHSYRQAIEVNRRDYRAWYGLGQT 383
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+YGLYYYKQA ++RP+D RM+ ALGEA+EKQ+KI +A+KCY K+ +GD +G
Sbjct: 384 YEILKMPFYGLYYYKQAQLLRPHDSRMVLALGEAYEKQDKIQDALKCYYKACNVGDIEGM 443
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D F D+T A+KYL +HLK LD
Sbjct: 444 ALLKLATLYEKLGEHDHAAAAYTDFV--MDEF-RNVDRTELSHAYKYLTQYHLKREQLDL 500
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQPMECAVVLDPV 321
A AQKCLQ +ET EEAK+LLR+IA+KR + E +S ++ DPV
Sbjct: 501 ANHFAQKCLQFDETKEEAKALLRTIAEKRAERIEETSMVVDDMNETDPV 549
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307194572|gb|EFN76864.1| Cell division cycle protein 23-like protein [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/249 (54%), Positives = 171/249 (68%), Gaps = 4/249 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF RALK+NP YL WTLLGHE+MEMKNTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 326 KAVMYFHRALKMNPQYLSAWTLLGHEFMEMKNTNGAIHSYRQAIEVNRRDYRAWYGLGQT 385
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+YGLYYYKQA ++RP+D RM+ ALGEA+EKQ+KI +A+KCY K+ +GD +G
Sbjct: 386 YEILKMPFYGLYYYKQAQLLRPHDSRMVLALGEAYEKQDKIQDALKCYYKACNVGDIEGM 445
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D + K A+ YL +HLK LD
Sbjct: 446 ALLKLATLYEKLGEHDHAATAYTDFV--VDEYRNVDRKELS-HAYIYLTQYHLKREQLDQ 502
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV-PPSTRSSKFPA 332
A AQKCLQ +ET EEAK LLR+IA+KR E +S +E DPV + R+
Sbjct: 503 ANHYAQKCLQFDETKEEAKVLLRTIAEKRAKVEETSMVVEDMNETDPVIEQAARTDAISG 562
Query: 333 NPAYPFATS 341
+ P S
Sbjct: 563 SQLSPMNLS 571
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380016481|ref|XP_003692212.1| PREDICTED: cell division cycle protein 23 homolog [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 142/250 (56%), Positives = 174/250 (69%), Gaps = 11/250 (4%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF RALKLNP YL WTLLGHE+MEMKNTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 326 KAVMYFHRALKLNPQYLSAWTLLGHEFMEMKNTNGAIHSYRQAIEVNKRDYRAWYGLGQT 385
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYYKQA ++RP+D RM+ ALGEA+EKQ KI +A+KCY K+ +GD +G
Sbjct: 386 YEILKMPFYALYYYKQAQLLRPHDSRMVLALGEAYEKQNKIQDALKCYYKACNVGDIEGM 445
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D F D+T A+KYL +HLK LD
Sbjct: 446 ALLKLATLYEKLGEHDHAAAAYTDFV--MDEF-RNADRTDLSHAYKYLTQYHLKREQLDY 502
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV------PPSTRS 327
A AQKCLQ +ET EEAK+LLR+IAQKR E S +E DPV P T
Sbjct: 503 ANHYAQKCLQFDETKEEAKALLRTIAQKRGKFE-HSMVIEDMNETDPVIEQGERPDVTSG 561
Query: 328 SKF-PANPAY 336
S+ P N ++
Sbjct: 562 SQLSPMNLSF 571
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|48138874|ref|XP_396943.1| PREDICTED: cell division cycle protein 23 homolog [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/250 (56%), Positives = 174/250 (69%), Gaps = 11/250 (4%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF RALKLNP YL WTLLGHE+MEMKNTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 326 KAVMYFHRALKLNPQYLSAWTLLGHEFMEMKNTNGAIHSYRQAIEVNKRDYRAWYGLGQT 385
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYYKQA ++RP+D RM+ ALGEA+EKQ KI +A+KCY K+ +GD +G
Sbjct: 386 YEILKMPFYALYYYKQAQLLRPHDSRMVLALGEAYEKQNKIQDALKCYYKACNVGDIEGM 445
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D F D+T A+KYL +HLK LD
Sbjct: 446 ALLKLATLYEKLGEHDHAAAAYTDFV--MDEF-RNADRTDLSHAYKYLTQYHLKREQLDY 502
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV------PPSTRS 327
A AQKCLQ +ET EEAK+LLR+IAQKR E S +E DPV P T
Sbjct: 503 ANHYAQKCLQFDETKEEAKALLRTIAQKRGKFE-HSMVIEDMNETDPVIEQGERPDVTTG 561
Query: 328 SKF-PANPAY 336
S+ P N ++
Sbjct: 562 SQLSPMNLSF 571
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156538665|ref|XP_001607732.1| PREDICTED: cell division cycle protein 23 homolog [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 171/242 (70%), Gaps = 4/242 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV+YF RALKLNP YL WTLLGHE+MEMKNTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 327 KAVMYFHRALKLNPQYLSAWTLLGHEFMEMKNTNGAIHSYRQAIEVNKRDYRAWYGLGQT 386
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+YGLYYYKQA ++RP D RM+ ALGEA+EKQ++I EA+KCY K+ +GD +G
Sbjct: 387 YEILKMPFYGLYYYKQAQLLRPRDSRMVLALGEAYEKQDRIPEALKCYYKACNVGDIEGM 446
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL +LA+LY+KL + AA + +FV+ D + D+T A+K+L +HLK LD
Sbjct: 447 ALIRLAQLYEKLGHHDNAAAAYTDFVT--DEY-RNEDRTELSHAYKFLTQYHLKREELDQ 503
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A AQKCLQ++ET EEAK+ LR+IAQKR E + +E DP+ T +
Sbjct: 504 ANHYAQKCLQYDETKEEAKAFLRTIAQKRIKVEENPMVVEDMNETDPI-GDTENRAVATT 562
Query: 334 PA 335
PA
Sbjct: 563 PA 564
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340709074|ref|XP_003393140.1| PREDICTED: cell division cycle protein 23 homolog [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/249 (55%), Positives = 171/249 (68%), Gaps = 5/249 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A +YF RALKLNP YL WTLLGHE+MEM+NTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 326 KASMYFHRALKLNPQYLSAWTLLGHEFMEMRNTNGAIHSYRQAIEVNKRDYRAWYGLGQT 385
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYYKQA ++RP+D RM+ ALGEA+EKQ KI +A+KCY K+ +GD +G
Sbjct: 386 YEILKMPFYALYYYKQAQLLRPHDSRMVQALGEAYEKQNKIQDALKCYYKACNVGDIEGM 445
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D F D+T A+KYL +HLK LD
Sbjct: 446 ALLKLATLYEKLGEHDHAAAAYTDFV--MDEF-INADRTDLSHAYKYLTQYHLKREQLDH 502
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV-PPSTRSSKFPA 332
A AQKCLQ +ET EEAK+LLR+IAQKR E S +E DPV R+ P
Sbjct: 503 ANHYAQKCLQFDETKEEAKALLRTIAQKRGKFE-HSMVVEDMNETDPVIEQGERADATPG 561
Query: 333 NPAYPFATS 341
+ P S
Sbjct: 562 SQLSPMNLS 570
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350418970|ref|XP_003492028.1| PREDICTED: cell division cycle protein 23 homolog [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/249 (55%), Positives = 170/249 (68%), Gaps = 5/249 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A +YF RALKLNP YL WTLLGHE+MEM+NTN AI YRQAIE+N DYRAWYGLGQT
Sbjct: 326 KASMYFHRALKLNPQYLSAWTLLGHEFMEMRNTNGAIHSYRQAIEVNKRDYRAWYGLGQT 385
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYYKQA ++RP+D RM+ ALGEA+EKQ KI +A+KCY K+ +GD +G
Sbjct: 386 YEILKMPFYALYYYKQAQLLRPHDSRMVQALGEAYEKQNKIQDALKCYYKACNVGDIEGM 445
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLA LY+KL E + AA + +FV +D F D+T A+KYL +HLK LD
Sbjct: 446 ALLKLATLYEKLGEHDHAAAAYTDFV--MDEF-INADRTDLSHAYKYLTQYHLKREQLDH 502
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV-PPSTRSSKFPA 332
A AQKCLQ +ET EEAK+LLR+IAQKR E S +E DPV R P
Sbjct: 503 ANHYAQKCLQFDETKEEAKALLRTIAQKRGKFE-HSMVVEDMNETDPVIEQGERVDATPG 561
Query: 333 NPAYPFATS 341
+ P S
Sbjct: 562 SQLSPMNLS 570
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|327265691|ref|XP_003217641.1| PREDICTED: cell division cycle protein 23 homolog [Anolis carolinensis] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/249 (51%), Positives = 167/249 (67%), Gaps = 3/249 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 345 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 404
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 405 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 464
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++LNE+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 465 ALVKLAKLHEQLNESEQAAQCYIKYIQDIHSCGEIVEHLEVSTAFRYLAQYYFKCKLWDE 524
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+SS + +L P S ++ P
Sbjct: 525 ASACAQKCCAFNDTREEGKALLRQILQLRNQGETSSTEIATPFLL---PSSLSANNTPTR 581
Query: 334 PAYPFATSD 342
P S+
Sbjct: 582 RVSPLNLSN 590
|
Source: Anolis carolinensis Species: Anolis carolinensis Genus: Anolis Family: Iguanidae Order: Squamata Class: Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| UNIPROTKB|F1NQ36 | 594 | CDC23 "Uncharacterized protein | 0.702 | 0.412 | 0.512 | 2.6e-63 | |
| UNIPROTKB|E2RHG6 | 597 | CDC23 "Uncharacterized protein | 0.702 | 0.410 | 0.508 | 1.1e-62 | |
| UNIPROTKB|F1RH91 | 594 | CDC23 "Uncharacterized protein | 0.702 | 0.412 | 0.508 | 1.1e-62 | |
| MGI|MGI:1098815 | 597 | Cdc23 "CDC23 cell division cyc | 0.702 | 0.410 | 0.504 | 1.8e-62 | |
| UNIPROTKB|A1A4R8 | 597 | CDC23 "Cell division cycle pro | 0.702 | 0.410 | 0.504 | 3e-62 | |
| UNIPROTKB|Q9UJX2 | 597 | CDC23 "Cell division cycle pro | 0.702 | 0.410 | 0.5 | 6.2e-62 | |
| RGD|1304819 | 250 | Cdc23 "cell division cycle 23" | 0.702 | 0.98 | 0.5 | 7.9e-62 | |
| UNIPROTKB|F1LRQ6 | 597 | Cdc23 "Protein Cdc23" [Rattus | 0.702 | 0.410 | 0.5 | 7.9e-62 | |
| ZFIN|ZDB-GENE-040426-866 | 579 | cdc23 "CDC23 (cell division cy | 0.664 | 0.400 | 0.5 | 5e-60 | |
| FB|FBgn0032863 | 678 | Cdc23 "Cell division cycle 23 | 0.627 | 0.323 | 0.5 | 8.9e-54 |
| UNIPROTKB|F1NQ36 CDC23 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 127/248 (51%), Positives = 165/248 (66%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 346 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 405
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 406 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 465
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++LNE+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 466 ALVKLAKLHEQLNESEQAAQCYIKYIQDIYSCGEIVEHLEVSTAFRYLAQYYFKCKLWDE 525
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+SS + L P S ++ P
Sbjct: 526 ASACAQKCCSFNDTREEGKALLRQILQLRNQGETSSTEIATPFFL---PASLSANSTPTR 582
Query: 334 PAYPFATS 341
P S
Sbjct: 583 RVSPLNLS 590
|
|
| UNIPROTKB|E2RHG6 CDC23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 126/248 (50%), Positives = 163/248 (65%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ S M L P S ++ P
Sbjct: 529 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPSTEMPAPFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
|
| UNIPROTKB|F1RH91 CDC23 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 126/248 (50%), Positives = 163/248 (65%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 346 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 405
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 406 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 465
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 466 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDE 525
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ S M L P S ++ P
Sbjct: 526 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPSTEMPAPFFL---PASLSANNTPTR 582
Query: 334 PAYPFATS 341
P S
Sbjct: 583 RVSPLNLS 590
|
|
| MGI|MGI:1098815 Cdc23 "CDC23 cell division cycle 23" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 125/248 (50%), Positives = 163/248 (65%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD + K
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKK 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGETVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ + L P S ++ P
Sbjct: 529 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPTSDTPGTFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
|
| UNIPROTKB|A1A4R8 CDC23 "Cell division cycle protein 23 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 125/248 (50%), Positives = 163/248 (65%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ S + L P S ++ P
Sbjct: 529 ASACAQKCCAFNDTREEGKALLRQILQLRNQGETPSTEIPAPFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
|
| UNIPROTKB|Q9UJX2 CDC23 "Cell division cycle protein 23 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 124/248 (50%), Positives = 163/248 (65%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ + + L P S ++ P
Sbjct: 529 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
|
| RGD|1304819 Cdc23 "cell division cycle 23" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 124/248 (50%), Positives = 162/248 (65%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 2 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 61
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 62 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 121
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 122 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGETVEHLEESTAFRYLAQYYFKCKLWDE 181
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ + L P S ++ P
Sbjct: 182 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPTSDTPGTFFL---PASLSANNTPTR 238
Query: 334 PAYPFATS 341
P S
Sbjct: 239 RVSPLNLS 246
|
|
| UNIPROTKB|F1LRQ6 Cdc23 "Protein Cdc23" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 124/248 (50%), Positives = 162/248 (65%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP YLG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 349 KAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 408
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK ++ EA KCY ++ A+GD +
Sbjct: 409 YEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKM 468
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++L E+E AA +++++ + + + AF+YLA ++ K D
Sbjct: 469 ALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGETVEHLEESTAFRYLAQYYFKCKLWDE 528
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPAN 333
A CAQKC +T EE K+LLR I Q R E+ + L P S ++ P
Sbjct: 529 ASTCAQKCCAFNDTREEGKALLRQILQLRNQGETPTSDTPGTFFL---PASLSANNTPTR 585
Query: 334 PAYPFATS 341
P S
Sbjct: 586 RVSPLNLS 593
|
|
| ZFIN|ZDB-GENE-040426-866 cdc23 "CDC23 (cell division cycle 23, yeast, homolog)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 116/232 (50%), Positives = 158/232 (68%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A LYFQRALKLNP LG WTL+GHEYMEMKNT+AAIQ YR AIE+N DYRAWYGLGQT
Sbjct: 332 KAALYFQRALKLNPRCLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQT 391
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
YEIL++P+Y LYYY++AH +RPND RML ALGE +EK + EA KCY ++ ++GD +
Sbjct: 392 YEILKMPFYSLYYYRKAHQLRPNDSRMLVALGECYEKLSQQLEAKKCYWRAYSVGDVERM 451
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
AL KLAKL+++LNE++ AA ++ ++ + + + A +YL ++ K D
Sbjct: 452 ALLKLAKLHEQLNESDDAAQCYIIYIQDIFSCGEQLEHAEVSTALRYLGQYYFKNKLYDE 511
Query: 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPST 325
A CAQ+C + + EE K+LLR I+ R+ E SS + V +P+ +T
Sbjct: 512 ASLCAQRCCDYNDAREEGKALLRQISAVREQGEPSSTDLSLPCVFNPLSNNT 563
|
|
| FB|FBgn0032863 Cdc23 "Cell division cycle 23 ortholog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 111/222 (50%), Positives = 146/222 (65%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
A+ YFQRALKLNP YL WTL+GHE+ME+KNTNAAIQ YR+A+E+N DYRAWYGLGQ Y
Sbjct: 337 AISYFQRALKLNPKYLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAY 396
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214
EI+++ YY LYY+K AH +RP D RML ALGE +EK +K A+KCY K+ +GD +G A
Sbjct: 397 EIIKMHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVGDIEGIA 456
Query: 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274
++KLA L++KL + E A ++ + D AA DK + F LAN++ K + A
Sbjct: 457 MYKLANLHEKLGDHETAVHCYIMYCE--DERAAT-DKQSLYQGFITLANYYEKKGEYERA 513
Query: 275 YKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316
A KCL E+ EAK+LL++I KR + AV
Sbjct: 514 AYYAYKCLDSEDRKMEAKALLKTIDWKRNAEGQKKVKTSTAV 555
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8BGZ4 | CDC23_MOUSE | No assigned EC number | 0.5040 | 0.7020 | 0.4103 | yes | N/A |
| A1A4R8 | CDC23_BOVIN | No assigned EC number | 0.5040 | 0.7020 | 0.4103 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 349 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-10 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-10 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 8e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 0.001 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 0.001 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.001 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.004 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.004 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-10
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+A+ Y+++AL+L+P+ + L Y ++ A++ Y +A+E++ + +A+Y LG
Sbjct: 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76
Query: 153 TYEILRLPYYGLYYYKQAHMVRPN 176
Y L L Y++A + PN
Sbjct: 77 AYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-10
Identities = 25/96 (26%), Positives = 49/96 (51%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171
LG+ Y ++ + + A++ Y +A+E++ + A+Y L Y L L Y++A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ P++ + LG A+ K K EA++ Y K+ +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 4e-05
Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 6/204 (2%)
Query: 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 63
L L E + L+ A L + A + +
Sbjct: 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119
Query: 64 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNP---NYLGVWTLLGHEY 120
K L + + A++LL A D +A+ +++AL+L+P LG
Sbjct: 120 KALALDPDPDLAEALLALGALYELGD--YEEALELYEKALELDPELNELAEALLALGALL 177
Query: 121 MEMKNTNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR 179
+ A++ +A+++N + D A LG Y L L YY++A + P++
Sbjct: 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAE 237
Query: 180 MLTALGEAFEKQEKISEAMKCYNK 203
L L + + EA++ K
Sbjct: 238 ALYNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE 155
LG+ ++ + + AI+ Y +A+E++ + A+Y L Y
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYL 48
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 18/197 (9%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA-QKRQPDESSSQAVLYF 99
A LA+ + N A ++ L+ + EA+ L + ++ + A
Sbjct: 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES----AKKIA 692
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQT 153
+ K +P + L G Y+ K+ AAIQ YR+A++ +RA G T
Sbjct: 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
E ++ + PND + TAL E + Q+ +A+K Y +
Sbjct: 753 AEAVKT-------LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAV 805
Query: 214 ALFKLAKLYDKLNETEA 230
L LA LY +L + A
Sbjct: 806 VLNNLAWLYLELKDPRA 822
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 4e-04
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
LG+ Y+++ + A++ Y +A+E+N
Sbjct: 3 ALYNLGNAYLKLGKYDEALEYYEKALELN 31
|
Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 5e-04
Identities = 11/48 (22%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEM-KNTNAAIQCYRQAIEIN 140
+A+ +++AL+L+P+ + L Y+++ K+ A++ +A+E++
Sbjct: 21 EAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELD 68
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 48/269 (17%), Positives = 102/269 (37%), Gaps = 12/269 (4%)
Query: 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLY 98
F A LA ++ N D A + +K L + A L + + + +AV +
Sbjct: 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG---NEEEAVAW 555
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
++A +LNP + L Y+ A+ +A + AW LG+
Sbjct: 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
+ +K+ ++P+ L L +A+ + ++A+ ++ + + +A L
Sbjct: 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675
Query: 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278
A+L TE+A + + A F+ + +L+ + A +
Sbjct: 676 AQLLLAAKRTESAKKIAKSLQKQHPKAA---------LGFELEGDLYLRQKDYPAAIQAY 726
Query: 279 QKCLQHEETAEEAKSLLRSIAQKRQPDES 307
+K L+ +++ A L R++ E+
Sbjct: 727 RKALKRAPSSQNAIKLHRALLASGNTAEA 755
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 8e-04
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
LG+ Y+++ + + A++ Y +A+E++
Sbjct: 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 9/192 (4%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
LA +L+ +L+ A + K L+H+ A L Q+ E +A F+RAL
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE---KAEDSFRRALT 93
Query: 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRLPYY 162
LNPN V G + A+Q + QAIE R+ G L+ +
Sbjct: 94 LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA--LKAGDF 151
Query: 163 GLY--YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
Y +A + P P L L E + + + +A + + + ++L+ +
Sbjct: 152 DKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR 211
Query: 221 LYDKLNETEAAA 232
+ L + AA
Sbjct: 212 IARALGDVAAAQ 223
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 18/151 (11%)
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG-------- 151
+AL+ +P+ + L Y ++ A +R+A+ +N + G
Sbjct: 55 DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114
Query: 152 --QTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
Q + Y + A R L G K +A K ++ I
Sbjct: 115 YEQAMQQFEQAIEDPLYPQPA--------RSLENAGLCALKAGDFDKAEKYLTRALQIDP 166
Query: 210 ADGKALFKLAKLYDKLNETEAAADLFMEFVS 240
++L +LA+LY + + A +
Sbjct: 167 QRPESLLELAELYYLRGQYKDARAYLERYQQ 197
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.001
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINN 141
+ LLG Y+++ + A + Y +A+E++
Sbjct: 3 AYYLLGQIYLQLGDYEEAKEYYEKALELDP 32
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.001
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
L + + + A+ A+ L A LG+ + A P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 176 NDP 178
+DP
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 29/139 (20%)
Query: 76 KSLLRSIAQKRQP--DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCY 133
+ R QP ++ + + L+ NP W LLG YM + + A+ Y
Sbjct: 120 QPADRLADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAY 179
Query: 134 RQAIEI--NNLDYRAWYGLGQTYEILRLPYYGLYY-------------YKQAHMVRPNDP 178
R A+ + +N + GL + LYY +QA + P +
Sbjct: 180 RNALRLAGDNPEI--LLGLAEA----------LYYQAGQQMTAKARALLRQALALDPANI 227
Query: 179 RMLTALGEAFEKQEKISEA 197
R L+ L A +Q +EA
Sbjct: 228 RALSLLAFAAFEQGDYAEA 246
|
Length = 287 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 46/137 (33%)
Query: 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 63
LY KL + + A + + + + A A+ LA + K + A +
Sbjct: 8 NLYYKLGDYDEALEYYEKALELDPDNAD---------AYYNLAAAYYKLGKYEEALED-- 56
Query: 64 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
+++AL+L+P+ + LG Y ++
Sbjct: 57 -----------------------------------YEKALELDPDNAKAYYNLGLAYYKL 81
Query: 124 KNTNAAIQCYRQAIEIN 140
A++ Y +A+E++
Sbjct: 82 GKYEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 5/196 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA-QKRQPDESSSQAVLYF 99
A + LA+ L+ +D A L + A SLL ++ A Y
Sbjct: 331 ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK----AAEYL 386
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+A +L+P T LG + + + AI A +++ RA L +Y
Sbjct: 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
L K+ +P++ + LG + + +++A + + K+ +I A LA
Sbjct: 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506
Query: 220 KLYDKLNETEAAADLF 235
++ + + A F
Sbjct: 507 RIDIQEGNPDDAIQRF 522
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| KOG4626|consensus | 966 | 100.0 | ||
| KOG4626|consensus | 966 | 100.0 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG1126|consensus | 638 | 100.0 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG0547|consensus | 606 | 100.0 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 100.0 | |
| KOG1155|consensus | 559 | 100.0 | ||
| KOG1126|consensus | 638 | 99.98 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG1155|consensus | 559 | 99.97 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG2002|consensus | 1018 | 99.96 | ||
| KOG0547|consensus | 606 | 99.96 | ||
| KOG1173|consensus | 611 | 99.96 | ||
| KOG2002|consensus | 1018 | 99.96 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.96 | |
| KOG2076|consensus | 895 | 99.95 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.95 | |
| KOG1173|consensus | 611 | 99.95 | ||
| KOG0624|consensus | 504 | 99.95 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.94 | |
| KOG1129|consensus | 478 | 99.94 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.94 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.93 | |
| KOG0495|consensus | 913 | 99.93 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.93 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.93 | |
| KOG1129|consensus | 478 | 99.93 | ||
| KOG1174|consensus | 564 | 99.93 | ||
| KOG0548|consensus | 539 | 99.93 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.93 | |
| KOG2003|consensus | 840 | 99.92 | ||
| KOG1174|consensus | 564 | 99.92 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.92 | |
| KOG0624|consensus | 504 | 99.92 | ||
| KOG1125|consensus | 579 | 99.92 | ||
| KOG2003|consensus | 840 | 99.92 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| KOG0495|consensus | 913 | 99.92 | ||
| KOG0548|consensus | 539 | 99.92 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.91 | |
| KOG4162|consensus | 799 | 99.91 | ||
| KOG2076|consensus | 895 | 99.91 | ||
| KOG1840|consensus | 508 | 99.9 | ||
| KOG1840|consensus | 508 | 99.9 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.9 | |
| KOG1125|consensus | 579 | 99.9 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.89 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.89 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.89 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.88 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.88 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.87 | |
| KOG0550|consensus | 486 | 99.87 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.87 | |
| KOG4162|consensus | 799 | 99.86 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.86 | |
| KOG0550|consensus | 486 | 99.86 | ||
| KOG1156|consensus | 700 | 99.86 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.85 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.83 | |
| KOG1127|consensus | 1238 | 99.83 | ||
| KOG1130|consensus | 639 | 99.82 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 99.81 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.81 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.81 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.8 | |
| KOG1127|consensus | 1238 | 99.79 | ||
| KOG1156|consensus | 700 | 99.79 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.78 | |
| KOG3060|consensus | 289 | 99.78 | ||
| KOG1915|consensus | 677 | 99.76 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.76 | |
| KOG1130|consensus | 639 | 99.75 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.75 | |
| KOG3060|consensus | 289 | 99.74 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.73 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.72 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.71 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.68 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.67 | |
| KOG1128|consensus | 777 | 99.67 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.67 | |
| KOG1128|consensus | 777 | 99.67 | ||
| KOG2376|consensus | 652 | 99.66 | ||
| KOG1915|consensus | 677 | 99.66 | ||
| KOG0553|consensus | 304 | 99.64 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.63 | |
| KOG3785|consensus | 557 | 99.63 | ||
| KOG0553|consensus | 304 | 99.61 | ||
| KOG2376|consensus | 652 | 99.6 | ||
| KOG1941|consensus | 518 | 99.59 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.53 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.51 | |
| KOG3785|consensus | 557 | 99.51 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.5 | |
| KOG1941|consensus | 518 | 99.5 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.48 | |
| KOG4340|consensus | 459 | 99.48 | ||
| KOG4340|consensus | 459 | 99.47 | ||
| KOG2047|consensus | 835 | 99.46 | ||
| KOG2047|consensus | 835 | 99.45 | ||
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.42 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.35 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.34 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.33 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.32 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.32 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.3 | |
| KOG1070|consensus | 1710 | 99.29 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.29 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 99.29 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.28 | |
| KOG0543|consensus | 397 | 99.27 | ||
| KOG1070|consensus | 1710 | 99.27 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.24 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.24 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.24 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.22 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.21 | |
| KOG0543|consensus | 397 | 99.21 | ||
| KOG3081|consensus | 299 | 99.19 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.17 | |
| KOG3617|consensus | 1416 | 99.14 | ||
| KOG3081|consensus | 299 | 99.14 | ||
| KOG4648|consensus | 536 | 99.14 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 99.12 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 99.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 99.06 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 99.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 99.04 | |
| KOG4648|consensus | 536 | 99.03 | ||
| KOG3617|consensus | 1416 | 99.01 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.98 | |
| KOG2471|consensus | 696 | 98.97 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.96 | |
| KOG2053|consensus | 932 | 98.95 | ||
| KOG4234|consensus | 271 | 98.94 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.93 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.92 | |
| KOG4234|consensus | 271 | 98.91 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.89 | |
| KOG2796|consensus | 366 | 98.88 | ||
| KOG2796|consensus | 366 | 98.87 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.86 | |
| KOG2053|consensus | 932 | 98.84 | ||
| KOG4555|consensus | 175 | 98.84 | ||
| KOG2471|consensus | 696 | 98.8 | ||
| KOG4555|consensus | 175 | 98.8 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.79 | |
| KOG1585|consensus | 308 | 98.79 | ||
| KOG1586|consensus | 288 | 98.77 | ||
| KOG1585|consensus | 308 | 98.76 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.75 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.75 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.74 | |
| KOG1586|consensus | 288 | 98.71 | ||
| KOG2610|consensus | 491 | 98.7 | ||
| KOG2610|consensus | 491 | 98.7 | ||
| KOG2300|consensus | 629 | 98.68 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.66 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.62 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.61 | |
| KOG2300|consensus | 629 | 98.57 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.57 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.51 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.5 | |
| KOG4642|consensus | 284 | 98.5 | ||
| KOG4642|consensus | 284 | 98.5 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.45 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.4 | |
| KOG3616|consensus | 1636 | 98.34 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.33 | |
| KOG0530|consensus | 318 | 98.32 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.32 | |
| KOG0545|consensus | 329 | 98.3 | ||
| KOG4507|consensus | 886 | 98.29 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.27 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.26 | |
| KOG1258|consensus | 577 | 98.25 | ||
| KOG0376|consensus | 476 | 98.24 | ||
| KOG0376|consensus | 476 | 98.23 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.15 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.14 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.14 | |
| KOG0545|consensus | 329 | 98.12 | ||
| KOG1550|consensus | 552 | 98.09 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.08 | |
| KOG1914|consensus | 656 | 98.07 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.07 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.07 | |
| KOG1550|consensus | 552 | 98.07 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 98.06 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.05 | |
| KOG1914|consensus | 656 | 98.05 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 98.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.99 | |
| KOG4507|consensus | 886 | 97.99 | ||
| KOG0985|consensus | 1666 | 97.98 | ||
| KOG0530|consensus | 318 | 97.96 | ||
| KOG0985|consensus | 1666 | 97.94 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.93 | |
| KOG0551|consensus | 390 | 97.92 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.89 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.87 | |
| KOG3616|consensus | 1636 | 97.87 | ||
| KOG1258|consensus | 577 | 97.86 | ||
| KOG1308|consensus | 377 | 97.83 | ||
| KOG1308|consensus | 377 | 97.82 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.81 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.8 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.8 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.76 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.73 | |
| KOG0551|consensus | 390 | 97.72 | ||
| KOG0890|consensus | 2382 | 97.7 | ||
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.69 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.69 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.68 | |
| KOG1464|consensus | 440 | 97.67 | ||
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.63 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.62 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.45 | |
| KOG1464|consensus | 440 | 97.45 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.45 | |
| KOG2041|consensus | 1189 | 97.43 | ||
| KOG0890|consensus | 2382 | 97.4 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.37 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.32 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.3 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.29 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.22 | |
| KOG3783|consensus | 546 | 97.19 | ||
| KOG3824|consensus | 472 | 97.16 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.14 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.13 | |
| KOG3824|consensus | 472 | 97.11 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 97.11 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.11 | |
| KOG2396|consensus | 568 | 97.11 | ||
| KOG2396|consensus | 568 | 97.09 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.04 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.02 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.01 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.96 | |
| KOG1463|consensus | 411 | 96.95 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.93 | |
| KOG1538|consensus | 1081 | 96.91 | ||
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.9 | |
| KOG2422|consensus | 665 | 96.83 | ||
| KOG1839|consensus | 1236 | 96.82 | ||
| KOG3783|consensus | 546 | 96.8 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.8 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.79 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.77 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.76 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.75 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.74 | |
| KOG2041|consensus | 1189 | 96.73 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.72 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 96.72 | |
| KOG3807|consensus | 556 | 96.64 | ||
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.63 | |
| KOG3364|consensus | 149 | 96.63 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.6 | |
| KOG2422|consensus | 665 | 96.59 | ||
| KOG1839|consensus | 1236 | 96.46 | ||
| KOG4814|consensus | 872 | 96.43 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 96.38 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.36 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.33 | |
| KOG4814|consensus | 872 | 96.2 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 96.12 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.04 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.03 | |
| KOG2581|consensus | 493 | 95.97 | ||
| KOG1538|consensus | 1081 | 95.97 | ||
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.97 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.95 | |
| KOG3364|consensus | 149 | 95.94 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.93 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 95.78 | |
| KOG1310|consensus | 758 | 95.78 | ||
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.61 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.55 | |
| KOG1310|consensus | 758 | 95.55 | ||
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 95.55 | |
| KOG1463|consensus | 411 | 95.47 | ||
| KOG0529|consensus | 421 | 95.45 | ||
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.38 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.32 | |
| KOG2581|consensus | 493 | 95.29 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.17 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.98 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 94.88 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.87 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.82 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 94.81 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 94.48 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 94.47 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 94.45 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.42 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.37 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.22 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.54 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 93.52 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.47 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 93.14 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 93.0 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.51 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.31 | |
| KOG0529|consensus | 421 | 91.97 | ||
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.08 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 90.92 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.87 | |
| PF12854 | 34 | PPR_1: PPR repeat | 90.85 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 90.8 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 90.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 90.73 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.62 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 90.6 | |
| KOG4014|consensus | 248 | 90.59 | ||
| KOG2114|consensus | 933 | 90.57 | ||
| PF13041 | 50 | PPR_2: PPR repeat family | 90.23 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 90.16 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 90.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 90.15 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 90.03 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 89.88 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.71 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 89.62 | |
| KOG0686|consensus | 466 | 89.08 | ||
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 89.06 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 88.94 | |
| KOG0276|consensus | 794 | 88.76 | ||
| KOG0546|consensus | 372 | 88.67 | ||
| KOG0128|consensus | 881 | 88.48 | ||
| KOG0546|consensus | 372 | 88.14 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.11 | |
| KOG4014|consensus | 248 | 87.94 | ||
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 87.51 | |
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 87.24 | |
| KOG3807|consensus | 556 | 87.17 | ||
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 87.09 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 86.92 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 86.51 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 86.4 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 85.62 | |
| KOG1920|consensus | 1265 | 85.58 | ||
| KOG4279|consensus | 1226 | 85.14 | ||
| KOG0686|consensus | 466 | 85.1 | ||
| TIGR02710 | 380 | CRISPR-associated protein, TIGR02710 family. Membe | 83.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 82.96 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 82.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 82.44 | |
| KOG2063|consensus | 877 | 82.14 | ||
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 82.06 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 81.95 | |
| KOG2062|consensus | 929 | 80.99 | ||
| PHA02537 | 230 | M terminase endonuclease subunit; Provisional | 80.93 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 80.11 |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=296.90 Aligned_cols=307 Identities=21% Similarity=0.206 Sum_probs=284.1
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+.++...|..++|..+|.++++..+.. +.+|..+|-.+..+|+.-.|+..|++++.++|+..+++..++.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~f---------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV 261 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCF---------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNV 261 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCce---------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHH
Confidence 456667888888888888888433322 25799999999999999999999999999999999997666655
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
|...+.+++|+.+|.+++...|++..++.++|.+|..+|..+-|+..|++++++.|+.++++.++|..+...|+..+
T Consensus 262 ---~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 262 ---YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred ---HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence 54568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|..+|.+++.+.|+.+++..++|.++.++|++++|..+|+++++..|..+.++.++|.+|.++|++++|+.+|++++.+.
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
|. .++++.++|.+|..+|+...|+.+|.+++.++|...+++.+|+.++...|+..+|+..|+++++++|+.
T Consensus 419 P~---------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 419 PT---------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred ch---------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCC
Q psy9209 323 PSTRSSKF 330 (349)
Q Consensus 323 ~~~~~~~~ 330 (349)
+++.-++.
T Consensus 490 pdA~cNll 497 (966)
T KOG4626|consen 490 PDAYCNLL 497 (966)
T ss_pred chhhhHHH
Confidence 99887763
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=294.58 Aligned_cols=309 Identities=22% Similarity=0.295 Sum_probs=271.9
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH-
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS- 81 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~- 81 (349)
|.++...|+++.|+..|+.+++.-+... .+|..+|.++...|+.+.|..+|..+++++|+...+...++.
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p~fi---------da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKPKFI---------DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCchhh---------HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 6778889999999999999994333222 568888888888888888888888888888865544333333
Q ss_pred ------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHH
Q psy9209 82 ------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQ 131 (349)
Q Consensus 82 ------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 131 (349)
++..+...|+...|+..|+++++++|+..++|+++|.+|...+.++.|+.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 23345557888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 132 CYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
+|.+++.+.|++..++.++|.+|..+|..+-|+..|++++++.|+.+.++.++|.++...|+..+|..+|.+++.+.|..
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
+++..++|.++..+|.+++|...|.++++..|. ...++.+||.+|.++|++++|+.+|+.++++.|...++
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~---------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPE---------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChh---------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 292 KSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 292 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
+.++|..+..+|+.+.|+.+|.+++.++|...++..++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 99999999999999999999999999999988887776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=259.14 Aligned_cols=242 Identities=12% Similarity=0.065 Sum_probs=214.4
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
..++..+...|++++|+..+++++.++|....++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33455566679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHH-HHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANH-HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
.+.|.. .........+...+.. +...|++++|+.++++++.++|++..++..+|.++..+|++++|+.+|++++++
T Consensus 495 ~l~p~~---~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 495 ELEKET---KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hcCCcc---ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 998862 1111122223333333 444799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy9209 319 DPVPPS 324 (349)
Q Consensus 319 ~p~~~~ 324 (349)
.+....
T Consensus 572 ~~~~~e 577 (615)
T TIGR00990 572 ARTEGE 577 (615)
T ss_pred hccHHH
Confidence 876443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=259.24 Aligned_cols=304 Identities=11% Similarity=0.078 Sum_probs=264.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...|++++|+..|++++... |+. ..+..+|.+|...|++++|+..++++++++|++..++..+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~------p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~-- 200 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECK------PDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR-- 200 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC------Cch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHH--
Confidence 4678899999999999999999433 221 4689999999999999999999999999999998885554
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCccc------------------------------HHHH------------------
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNY------------------------------LGVW------------------ 113 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------~~~~------------------ 113 (349)
+.++...|++++|+..|..+...++.. ...+
T Consensus 201 -a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 201 -ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred -HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 455666799999998776654433211 1111
Q ss_pred ---------------HHHHHHH---HhcCChHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy9209 114 ---------------TLLGHEY---MEMKNTNAAIQCYRQAIEI---NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM 172 (349)
Q Consensus 114 ---------------~~la~~~---~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 172 (349)
..++..+ ...+++++|+..|+++++. .|....++..+|.++...|++++|+..+++++.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 477788999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCc
Q psy9209 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKT 252 (349)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (349)
++|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.+.|+
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-------- 431 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-------- 431 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 253 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
....+..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++++|++.....
T Consensus 432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999998655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=246.39 Aligned_cols=295 Identities=8% Similarity=-0.035 Sum_probs=197.2
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
...|++++|+..|++++...|... .++..+|.++...|++++|+..+++++..+|+++.++..++.+ +
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~~---------~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~---l 154 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQP---------EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRT---L 154 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH---H
Confidence 344555555555555552222111 3445555555555555555555555555555554443333322 3
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN-LDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++...| ........++.++...|++++|+.
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 3345555555555555555555544444332 24455555555555555555443 222233445667777788888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHH----HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISE----AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+++++...|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++..
T Consensus 234 ~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 234 TGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888875 788888888888888888888888888888888888888888888
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
.|. .+.++..+|.++...|++++|+..|++++..+|+.......++.++...|++++|+..|+++++.+|+
T Consensus 314 ~P~---------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 314 HPD---------LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred CCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 887 67788888888888888888888888888888887776666778888888888888888888888887
Q ss_pred CC
Q psy9209 322 PP 323 (349)
Q Consensus 322 ~~ 323 (349)
+.
T Consensus 385 ~~ 386 (656)
T PRK15174 385 HL 386 (656)
T ss_pred hc
Confidence 65
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=246.08 Aligned_cols=299 Identities=10% Similarity=-0.029 Sum_probs=272.5
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
....+.|++++|+..++.++...+... .+++.+|.+....|++++|+..+++++..+|+++.++..++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~---------~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la--- 117 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGR---------DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA--- 117 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCch---------hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH---
Confidence 446788999999999999995443332 57899999999999999999999999999999999866555
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
..+...|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHH
Confidence 44566799999999999999999999999999999999999999999999999999999988887765 47889999999
Q ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHH----HHHHHHHH
Q psy9209 164 LYYYKQAHMVRPN-DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEA----AADLFMEF 238 (349)
Q Consensus 164 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~ 238 (349)
+..+++++...|. .......++.++...|++++|+..+++++..+|+++.++..+|.++...|++++ |+..|+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9999999998764 344556678899999999999999999999999999999999999999999986 89999999
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
+...|+ ...++..+|.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..|+++++.
T Consensus 277 l~l~P~---------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 277 LQFNSD---------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HhhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999998 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy9209 319 DPVPPS 324 (349)
Q Consensus 319 ~p~~~~ 324 (349)
+|++..
T Consensus 348 ~P~~~~ 353 (656)
T PRK15174 348 KGVTSK 353 (656)
T ss_pred CccchH
Confidence 998764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=261.68 Aligned_cols=303 Identities=14% Similarity=0.046 Sum_probs=233.2
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-------
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA------- 75 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------- 75 (349)
+.++...|++++|+..|+++++..|... .++..+|.++...|++++|+..|+++++.+|++...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~---------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDS---------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 6678889999999999999995433222 578999999999999999999999999998876432
Q ss_pred ----HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHH
Q psy9209 76 ----KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151 (349)
Q Consensus 76 ----~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 151 (349)
+......+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1122334556667899999999999999999999999999999999999999999999999999998877665554
Q ss_pred HH------------------------------------------HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 152 QT------------------------------------------YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 152 ~~------------------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
.+ +...|++++|+..|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 445789999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHH----------------------------------------------------
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFK---------------------------------------------------- 217 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~---------------------------------------------------- 217 (349)
..|++++|+..++++++..|.++..++.
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999888876654443
Q ss_pred ----------------------HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 218 ----------------------LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 218 ----------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
+|.++...|++++|+..|++++...|. ++.++..++.++...|++++|+
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---------~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG---------NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHH
Confidence 444555556666666666666666555 5666666666666666666666
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 276 KCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
..++++++..|++..++..++.++...|++++|+..|++++...|+++
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 666666666666666666666666666666666666666666655443
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=231.99 Aligned_cols=294 Identities=17% Similarity=0.170 Sum_probs=264.2
Q ss_pred CcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCC
Q psy9209 10 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 89 (349)
Q Consensus 10 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 89 (349)
-+..+|+..|++.-... .++. +++..+|..|+..++|++|..+|+.+-...|-..+....+..+.+-+
T Consensus 333 y~~~~A~~~~~klp~h~-------~nt~--wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL--- 400 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-------YNTG--WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL--- 400 (638)
T ss_pred HHHHHHHHHHHhhHHhc-------CCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---
Confidence 35678888887732111 1111 78999999999999999999999999999887666655555554443
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
.+--+--.+.+..+..+|+.|+.|..+|.+|.-+++++.|+++|++++.++|....+|..+|.-+....+++.|..+|+.
T Consensus 401 q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 401 QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 33333334556778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
++..+|.+-.+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+..|++|+.++|.
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k----- 555 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK----- 555 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
++...+..|.+++..+++++|+..+++..++.|+...++..+|.++...|+.+.|+..|.-|..++|.-..
T Consensus 556 ----n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 ----NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ----CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999998655
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=253.95 Aligned_cols=303 Identities=18% Similarity=0.140 Sum_probs=225.1
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+.++...|++++|+..+++++...+ .. ..+|..+|.++...|++++|+..|+++++..|+++..+..++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~~------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-- 642 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAP------DS---PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA-- 642 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH--
Confidence 3445555566666666555553211 11 145666777777777777777777777776666665543333
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
..+...|++++|+..++++++.+|++..++..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++
T Consensus 643 -~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 -DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 3344457777777777777777777777777777777777777777777777777777777777777777788888888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+..|++++...|++ ..+..++.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|++++...
T Consensus 722 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 722 AIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 888888888777766 5667778888888888888888888888888888888888888888888888888888888887
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
|+ .+.++..+|.++...|+ .+|+.++++++...|+++..+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 801 p~---------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 801 PD---------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred CC---------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 77 67888888888888888 778888888888888888888888888888888888888888888888887
Q ss_pred CCcccc
Q psy9209 323 PSTRSS 328 (349)
Q Consensus 323 ~~~~~~ 328 (349)
+.+...
T Consensus 871 ~~~~~~ 876 (899)
T TIGR02917 871 AAIRYH 876 (899)
T ss_pred hHHHHH
Confidence 766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=251.41 Aligned_cols=297 Identities=13% Similarity=0.081 Sum_probs=260.2
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+.++...|++++|+..|+++++..|... .++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~---------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDS---------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5567789999999999999995433221 5788999999999999999999999999999987765443322
Q ss_pred ---------------------------------------HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 83 ---------------------------------------AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 83 ---------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
+..+...|++++|+..|+++++.+|+++.+++.+|.++...
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 23344579999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------------------
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA--------------------------------- 170 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------------------------------- 170 (349)
|++++|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 99999999999999999999988888887777777777777666542
Q ss_pred -------HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 171 -------HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 171 -------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++++...|
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 2247888889999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh------HHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA------EEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
. ....+..+|.++...|++++|+..+++++...|+. ..++..++.++...|++++|+..|++++.
T Consensus 669 ~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 D---------SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred C---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 78899999999999999999999999999876543 24566679999999999999999999985
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=249.46 Aligned_cols=306 Identities=15% Similarity=0.147 Sum_probs=178.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.+.++...|++++|+..|+++++..+... .++..+|.++...|++++|+..+++++...|++..++..++.
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFF---------PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 35566666777777777776663222111 345556666666666666666666666555555444332222
Q ss_pred -------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 82 -------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 82 -------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
++..+...|++++|+..+++++...|.++..+..+|.++...|++++|+
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2223333455555555555555555555555555566666666666666
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
..|+++++..|.++.++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|+..++.+.+..|.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 701 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 66666655555555555566666666666666666666666555555555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
.+..+..+|.++...|++++|+..|++++...|+ ...+..++.++...|++++|...++++++..|++..
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS----------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----------chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 5666666666777777777777777777766665 144555566666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 291 AKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 291 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
++..++.++...|++++|+..|+++++..|+++.++
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 666666666666666666666666666666555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=211.53 Aligned_cols=307 Identities=13% Similarity=0.111 Sum_probs=260.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
++.-+++.|+|++||++|.++|+..+..+ ..|.+++-+|...|+|++.++...++++++|+...++...+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~ep---------iFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEP---------IFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCc---------hhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 35567889999999999999996544332 568999999999999999999999999999987654321111
Q ss_pred -------H------------------------------------------------------------------------
Q psy9209 82 -------I------------------------------------------------------------------------ 82 (349)
Q Consensus 82 -------~------------------------------------------------------------------------ 82 (349)
+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 0
Q ss_pred -------------------------------------------------------------HHhcCCCcchHHHHHHHHH
Q psy9209 83 -------------------------------------------------------------AQKRQPDESSSQAVLYFQR 101 (349)
Q Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~A~~~~~~ 101 (349)
|..+.-.|++..|...|++
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 0111225777788888888
Q ss_pred HHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 102 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
++.++|.+...+..+|.+|...++.++-...|.++..++|.++++|+..|+++.-++++++|+.-|++++.++|++..++
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (349)
..++.+.++++++++++..|+.+.+..|..++++...|.++..++++++|++.|..++.+.|....+ ...+..+...
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~---~v~~~plV~K 508 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI---IVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc---cccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998872111 1122223333
Q ss_pred HHHH-HHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 262 ANHH-LKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 262 ~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
|.+. .-.+++..|..+++++++++|....++..||.+..++|+.++|+++|+++..+..
T Consensus 509 a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 509 ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3222 2358999999999999999999999999999999999999999999999876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-29 Score=214.21 Aligned_cols=302 Identities=15% Similarity=0.099 Sum_probs=256.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchH-HHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE-EAKSLLR 80 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~ 80 (349)
++..+...|++++|+..|+++++.. |+. ..++..+|.++...|++++|+..+++++...+... .....+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------PET---VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------ccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4567778899999999999999532 222 15789999999999999999999999987532221 1223456
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH-----HHHHHHHHHHH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY-----RAWYGLGQTYE 155 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~ 155 (349)
.++..+...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 6677788889999999999999999999999999999999999999999999999999877642 35678999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-HHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 156 ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-GKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
..|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|...
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988865 46778899999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH--cCCCCCchhHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK--RQPDESSSQPM 312 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~ 312 (349)
+++++...|+ . ..+..++.++...|++++|+..++++++..|+.......++..... .|+.++++..+
T Consensus 272 l~~~~~~~p~---------~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 272 LRRALEEYPG---------A-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHhCCC---------c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 9999999886 3 3458899999999999999999999999999998777666554432 45888888888
Q ss_pred HHhh----hcCCCC
Q psy9209 313 ECAV----VLDPVP 322 (349)
Q Consensus 313 ~~a~----~~~p~~ 322 (349)
++.+ ..+|++
T Consensus 342 ~~~~~~~~~~~p~~ 355 (389)
T PRK11788 342 RDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHhCCCCE
Confidence 7665 445553
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-29 Score=201.48 Aligned_cols=290 Identities=38% Similarity=0.630 Sum_probs=244.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHh-ccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSK-LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
..++....+.++++.-++..+.. ++... ..-...|.+...+.++++|+..|+.+.+.+|-..+-...+.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~---------~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN 304 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSM---------YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN 304 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccH---------HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence 45566666777888777666633 22111 456678889999999999999999999887743221111111
Q ss_pred -------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 82 -------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 82 -------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
++..|.-.+++++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 305 ~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 305 VLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 2344555789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
+.|++|++++|.+..+|+++|+.|..++.+.=|+-+|+++....|+++..|..+|.||.+.++.++|+.+|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+..++..+|.+|.++++.++|..+|++.++..... ....+....+...|+..+.+.+++++|..+..+++..++...+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e--g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE--GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 99999999999999999999999999999854211 1223336777888999999999999999999999999888888
Q ss_pred HHHHHHHHHHHcC
Q psy9209 291 AKSLLRSIAQKRQ 303 (349)
Q Consensus 291 ~~~~l~~~~~~~~ 303 (349)
+...+..+...+.
T Consensus 543 ak~LlReir~~~~ 555 (559)
T KOG1155|consen 543 AKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHhcC
Confidence 8888877766543
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=215.58 Aligned_cols=267 Identities=19% Similarity=0.278 Sum_probs=238.5
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+.|+..++|++|..+|+.+-+.-|-.. .. .-....++++..+--+--...+..+..+|+.|+.|..++++
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~~---meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRV------KG---MEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc------cc---hhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 7889999999999999998873322211 11 22334455555554444445566778899999999888866
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+.-+++++.|+++|+++++++|...-+|..+|.-+....+++.|..+|++++..+|.+..+|+++|.+|.++++++.
T Consensus 431 ---fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 431 ---FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred ---hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 44469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|.-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|...+++..+..
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
|+ ...+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 588 P~---------es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 588 PQ---------ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cc---------hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99 8999999999999999999999999999999997655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=210.80 Aligned_cols=275 Identities=12% Similarity=0.038 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc----HHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY----LGVWTL 115 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~ 115 (349)
...+.+|..+...|++++|+..|+++++.+|++..++..++ ..+...|++++|+..+++++...+.. ..++..
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALG---NLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHH---HHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34677899999999999999999999999999887755554 44566799999999999998854322 356789
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHH
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEK 190 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~ 190 (349)
+|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999887653 256688999999
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
.|++++|+..++++++..|+...++..+|.++...|++++|+..+++++...|.. ...++..++.++...|+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY--------LSEVLPKLMECYQALGD 264 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh--------HHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999987762 35678899999999999
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 271 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+++|...++++++..|+.... ..++.++...|++++|+..++++++..|++....
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 999999999999999987554 8899999999999999999999999999887543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=223.97 Aligned_cols=268 Identities=12% Similarity=0.030 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+|+.+|.++.. ++..+|+..+.+++...|++.. ...++..+...|++++|+..|++++...|. ...+..+|.+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~----~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~a 551 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ----HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH----HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 689999999987 8999999999999999997542 222344445679999999999998877665 4567899999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
+...|++++|+.+|+++++.+|.....+..++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+.
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999998888877777777889999999999999999996 9999999999999999999999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
.|++++..+|+++.++.++|.++...|++++|+..|+++++..|+ ++.++.++|.++...|++++|+.+++
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---------~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD---------DPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
++++..|+...+....+.+.....+++.|.+.+.++..++|...
T Consensus 702 ~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 702 LVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999876
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=191.40 Aligned_cols=309 Identities=18% Similarity=0.201 Sum_probs=253.5
Q ss_pred ChhhhHHhhCcHHHHHHHHHHHHHhccccC---------------------CCCCcchhHHHHHHHHHHHHhcCCHHHHH
Q psy9209 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFA---------------------APPDKTCGFFAFKYLANHHLKANNLDTAY 59 (349)
Q Consensus 1 l~a~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 59 (349)
|.+.++.+.|....|+..|.+++...|-.. .-+.+ .....-+.++.++....+.++++
T Consensus 169 L~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~-~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 169 LYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSD-MHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCccc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999986555332 00000 00011223445555555666666
Q ss_pred HHHHHHhhh-hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH----------------------------
Q psy9209 60 KCAQKCLQH-EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL---------------------------- 110 (349)
Q Consensus 60 ~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------------- 110 (349)
.-++..... -|.+... ...++.+.....++++|+..|+.+.+.+|-..
T Consensus 248 ~k~e~l~~~gf~~~~~i---~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYI---KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHhccCCccHHH---HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 666666555 4444333 44455666677899999999999999887421
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 111 ------GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 111 ------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
+....+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+-.+|+.+
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 11233466777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
|++|.-++...=|+-+|++++...|.++..|..||.||.+.++.++|+++|.+++..... ...++..||.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt---------e~~~l~~LakL 475 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT---------EGSALVRLAKL 475 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc---------chHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998766 78999999999
Q ss_pred HHHhCCHHHHHHHHHHHHc-------ccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 265 HLKANNLDTAYKCAQKCLQ-------HEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
|.+.++..+|..+|++.++ ..|....+...|+.-+.+.+++++|..+..+++.-++.-
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 9999999999999999987 456677888889999999999999999888887765543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=216.17 Aligned_cols=300 Identities=12% Similarity=-0.058 Sum_probs=175.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|.++...|++++|+..|+++++..|... .++..++.++...|++++|+..++++++..|++.. +..++.+
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~P~~~---------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLEPQND---------DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 5667788888888888888874322221 45677788888888888888888888888887777 5554433
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH----------------------------
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR---------------------------- 134 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------------- 134 (349)
+...|++++|+..++++++..|+++.++..+|.++...|..++|+..++
T Consensus 126 ---l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 ---YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred ---HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 4445788888888888888888777777666666655555443333322
Q ss_pred ------------------HHHHhCcccHH-------HHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHH
Q psy9209 135 ------------------QAIEINNLDYR-------AWYG-LGQTYEILRLPYYGLYYYKQAHMVRPNDP-RMLTALGEA 187 (349)
Q Consensus 135 ------------------~a~~~~~~~~~-------~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~ 187 (349)
++++..|.++. +... ++ .+...|++++|+..|+++++..|..+ .+...+|.+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 22221111110 0111 11 12344555555555555555432222 122223445
Q ss_pred HHHhhCHHHHHHHHHHHHcccccc-----------------------------------------------------HHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDAD-----------------------------------------------------GKA 214 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~-----------------------------------------------------~~~ 214 (349)
+...|++++|+..|++++..+|.+ ..+
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 555555555555555544444332 123
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
+..++.++...|++++|+..+++++...|. +..++..+|.++...|++++|+..+++++..+|++..++..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~---------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPG---------NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 344555555555555555555555555555 56666666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCCCCchhHHHHhhhcCCCCCCc
Q psy9209 295 LRSIAQKRQPDESSSQPMECAVVLDPVPPST 325 (349)
Q Consensus 295 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 325 (349)
++.++...|++++|...++++++..|+++.+
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 6666666666666666666666666666543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-27 Score=214.49 Aligned_cols=300 Identities=10% Similarity=-0.014 Sum_probs=251.7
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCC-------------------------HH---
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN-------------------------LD--- 56 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~--- 56 (349)
+..+.|++++|..+|+.+... +....-+ ..+...++.+|...+. +.
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPF-QGDARLS-----QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIA 458 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCC-CcccccC-----HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhh
Confidence 456789999999999998842 1111001 1233367777766544 22
Q ss_pred HHHHHHHHHhhhhhc--hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 57 TAYKCAQKCLQHEET--AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 57 ~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
.+...+.+++...|. ++.++..++.+. .. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l---~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCY---RD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHH---Hh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 233444455555666 777766666554 33 799999999999999999754 46667888889999999999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 135 QAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 135 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
+++...|. ...+..+|.++...|++++|+.+++++++..|.....+..++......|++++|+..++++++.+|+ +..
T Consensus 534 ka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a 611 (987)
T PRK09782 534 KISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANA 611 (987)
T ss_pred HHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH
Confidence 98877555 4567899999999999999999999999999999888877777777889999999999999999996 999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
+..+|.++.+.|++++|+..|++++..+|+ .+.++..+|.++...|++++|+..++++++..|+++.++..
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPN---------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 295 LRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 295 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+|.++...|++++|+..|+++++++|++..+.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 99999999999999999999999999887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-27 Score=213.69 Aligned_cols=310 Identities=15% Similarity=0.089 Sum_probs=249.6
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
++....|+.++|+..|.++.. . .+.. ..++..+|.++...|++++|+..++++++.+|+++.++..++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~-~-----~~~~---a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la--- 90 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRV-H-----MQLP---ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI--- 90 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-h-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---
Confidence 466788999999999998872 1 1211 146899999999999999999999999999999988865444
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..++|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 4455679999999999999999999999 999999999999999999999999999999999999999988777766654
Q ss_pred H----------------------------------------------HHHHHHHhcCCCChHH-------HHH-HHHHHH
Q psy9209 164 L----------------------------------------------YYYKQAHMVRPNDPRM-------LTA-LGEAFE 189 (349)
Q Consensus 164 ~----------------------------------------------~~~~~~~~~~~~~~~~-------~~~-l~~~~~ 189 (349)
+ ..++.+++..|.++.. ... ++ .+.
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll 248 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALL 248 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHH
Confidence 4 3444444333333321 111 33 346
Q ss_pred HhhCHHHHHHHHHHHHccccccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC----------------------
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADG-KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA---------------------- 246 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------- 246 (349)
..|++++|+..|+++++..|..+ .+...+|.++..+|++++|+..|++++...|...
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 77999999999999998864322 2344468889999999999999999887665430
Q ss_pred -------CCCCCc---------------chHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCC
Q psy9209 247 -------APPDKT---------------CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 247 -------~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 304 (349)
.....| ....++..++.++...|++++|+..+++++...|.++.++..++.++...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 001111 1245678899999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHhhhcCCCCCCccc
Q psy9209 305 DESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
+++|+..++++++++|++.....
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHH
Confidence 99999999999999999976543
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=202.08 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=214.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|++.+..|+|..|+.+|++++...|....++ ...+|.|+++.|+.+.|+..|+++++++|.+..+...|+.
T Consensus 170 kA~i~ynkkdY~~al~yyk~al~inp~~~aD~--------rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~ 241 (1018)
T KOG2002|consen 170 KARIAYNKKDYRGALKYYKKALRINPACKADV--------RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGE 241 (1018)
T ss_pred HHHHHhccccHHHHHHHHHHHHhcCcccCCCc--------cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 68899999999999999999996555444333 5678999999999999999999999999999998888888
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhC
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILR 158 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~ 158 (349)
+.........+..++..+.++...+|.+|.+...++..++..|+|+.+..+...++..... -.+.++.+|.+|..+|
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 7776666667777888888888777776666655555555555555555555555543211 2334555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC----cHHHH--
Q psy9209 159 LPYYGLYYYKQAHMVRPND-PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN----ETEAA-- 231 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~----~~~~A-- 231 (349)
++++|..+|.++++.+|++ .-.++.+|.++...|+++.|+.+|+++++..|++.+....+|.+|...+ ..+.|
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 5555555555555555554 3444555555555555555555555555555555444444444444432 23333
Q ss_pred -------------------------------HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 232 -------------------------------ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 232 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+..|.+++.+... ...+-.++.++++|..++..|++.+|...|.+
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~----~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES----KGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH----cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 5555555432221 11223578889999999999999999999999
Q ss_pred HHcc-----cCC-----hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 281 CLQH-----EET-----AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 281 a~~~-----~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
++.. +++ +....++++.+....++++.|.+.|..+++..|...+...++
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 8765 121 223578889999999999999999999999988877766555
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=191.04 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
+..+...|+-++..|+|++|+.+|..++++.|+.+.. +.+.+-+|...|+|++.++...++++++|+...+++..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4568889999999999999999999999999997655 4555566666799999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHH------------------HHHh--------------Cc-------------------------
Q psy9209 119 EYMEMKNTNAAIQCYRQ------------------AIEI--------------NN------------------------- 141 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~------------------a~~~--------------~~------------------------- 141 (349)
.+..+|++++|+....- .++. .|
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 99999999888754321 1110 00
Q ss_pred -------------------------------------------cc---------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 142 -------------------------------------------LD---------YRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 142 -------------------------------------------~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
.+ ..++...|..+.-.|++-.|...++.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 01 33445556667778899999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
++.++|.+...|..+|.+|....+.++-...|.++..++|.++++|+..|+++.-++++++|+..|++++.++|+
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe----- 426 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE----- 426 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcccc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
+...+..++.+.+++++++++...|+.+.+..|+.++++...+.++..+++++.|++.|+.++++.|....++.+
T Consensus 427 ----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 427 ----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999995544443
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=191.97 Aligned_cols=280 Identities=16% Similarity=0.128 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+....+..++..+++.+..+.++..++.+|-+..... ..++ ++...|+..+-...-.+.++..|+.+..|+..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~--~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP--LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH--HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45677888999999999999999999999998877643 3333 44556787777777888999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|...|++.+|..+|.++..++|....+|...|..+...|+.++|+..|..|-++.|........+|.-|...++++-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+|.+++.+.|.+|-++..+|.+.+..+.+.+|..+|+.++..-+.. ....+.....+.+||.++.+++.+++|+.+++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~--~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV--LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc--cccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999554442 11222356779999999999999999999999
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
+++.+.|.+..++..+|.++..+|+++.|++.|.+++.++|++..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999999999999999999999999999999999854
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=203.97 Aligned_cols=311 Identities=15% Similarity=0.146 Sum_probs=214.4
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|+.|..+|++++|..+|.+++...+.+. . ..++.+|..++..|+++.|+.+|++++...|++.+...+++.
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~------~--l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNF------V--LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCc------c--ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 47899999999999999999995433332 1 458999999999999999999999999999998887777766
Q ss_pred HHHhc-CCCcchHHHHHHHHHHHhhCcc--------------------------------------cHHHHHHHHHHHHh
Q psy9209 82 IAQKR-QPDESSSQAVLYFQRALKLNPN--------------------------------------YLGVWTLLGHEYME 122 (349)
Q Consensus 82 ~~~~~-~~~~~~~~A~~~~~~~~~~~~~--------------------------------------~~~~~~~la~~~~~ 122 (349)
+.... ......+.|..+..++++..|. .++..+++|..++.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 54332 1111223333333333333222 12333444555555
Q ss_pred cCChHHHHHHHHHHHH--------------------------------------------hCcccHHHHHHHHHHHHHhC
Q psy9209 123 MKNTNAAIQCYRQAIE--------------------------------------------INNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~--------------------------------------------~~~~~~~~~~~l~~~~~~~~ 158 (349)
.|++++|...|.+++. ..|...+++..+|.+....+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 5555555555555544 44444444444444444444
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH------------------------------------------------H
Q psy9209 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFE------------------------------------------------K 190 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------------~ 190 (349)
...+|...+..++..+..++.++..+|.++. .
T Consensus 545 ~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 4444455555555444444444444443333 2
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
.+.+++|+.+|.+++..+|.+..+-..+|.++...|++.+|..+|.++.+-..+ ...+|.++|.||..+|+
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~---------~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD---------FEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh---------CCceeeeHHHHHHHHHH
Confidence 234566777777777777777777777777777777777777777777665444 67899999999999999
Q ss_pred HHHHHHHHHHHHccc--CChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 271 LDTAYKCAQKCLQHE--ETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
|..|++.|+.+++.. .++.++...||.++...|.+.+|.+...+++.+.|.++.+..++
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999998764 46789999999999999999999999999999999999887766
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=196.71 Aligned_cols=262 Identities=16% Similarity=0.118 Sum_probs=123.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh-h-hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQ-H-EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
..+|.+++..|++++|++++.+.+. . .|+++..|..++.++.. .++++.|+..|++++..++..+..+..++.+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~---~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS---LGDYDEAIEAYEKLLASDKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc-
Confidence 3669999999999999999976654 4 47888887777777665 4899999999999999999988888888888
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhCHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR--PNDPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
...+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.++.+|..+|.++.+.|++++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 799999999999999988654 56777888889999999999999999977654 678899999999999999999999
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
.+|+++++.+|+++.+...++.++...|+.+++...+.......|. ++..+..+|.++...|++++|+.++
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD---------DPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---------SCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999999999999988887777 6778899999999999999999999
Q ss_pred HHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 279 QKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 279 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
++++..+|+++.....++.++...|+.++|..++++++..
T Consensus 238 ~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 238 EKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998753
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-24 Score=185.08 Aligned_cols=294 Identities=15% Similarity=0.113 Sum_probs=247.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|......|++++|..++.++|.+.|... .+|+.||.+|.++|+.+++...+-.+-.++|.+.+.|..++.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~---------~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNP---------IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccch---------hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 5667778999999999999996554443 5799999999999999999999999999999999998888877
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHh
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEIL 157 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~ 157 (349)
... .|++.+|.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|.. .......+..+...
T Consensus 217 s~~---~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 217 SEQ---LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHh---cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 665 4999999999999999999999999999999999999999999999999998832 22334557777788
Q ss_pred CCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc----------------------------
Q psy9209 158 RLPYYGLYYYKQAHMVR--PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI---------------------------- 207 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------------- 207 (349)
++-+.|++.++.++... ....+.+..++.++....+++.|..........
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 88899999999988832 223345667777777777777777666554430
Q ss_pred -----------------------------------cc-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 208 -----------------------------------GD-ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 208 -----------------------------------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
.| +.++.+..++..+...|++.+|+.+|..+....+..
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~------ 447 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ------ 447 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc------
Confidence 00 125677889999999999999999999988766552
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
...+|+.+|.+|..+|.+++|+++|++++...|++.+++..|+.++..+|+.++|.+.+++..
T Consensus 448 --~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 448 --NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred --chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999998877
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=193.27 Aligned_cols=267 Identities=14% Similarity=0.052 Sum_probs=223.3
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhhCcccHH
Q psy9209 41 AFKYLANHHLKA---NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR------QPDESSSQAVLYFQRALKLNPNYLG 111 (349)
Q Consensus 41 ~~~~l~~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~ 111 (349)
.++..|...... +++++|+..|+++++.+|+++.++..++.+.... ...+++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 455667655433 4578999999999999999988876665432221 1346689999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777777778889
Q ss_pred hCHHHHHHHHHHHHccc-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 192 EKISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
|++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|. .......++..|...|+
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT---------GLIAVNLLYAEYCQNSE 490 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch---------hHHHHHHHHHHHhccHH
Confidence 99999999999999874 778889999999999999999999999998887776 67888889999888884
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 271 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
+|...+++.++.....+.....+..++...|+.+.+..+ +++.+.+
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 788878777665433333334477888888888888777 6665543
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=177.87 Aligned_cols=279 Identities=18% Similarity=0.136 Sum_probs=246.7
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...+++.+..++++..++..|. +.. ..-..+| ++...|+..+-...-.+.+...|+.+..|+..+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpf------h~~--~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPF------HLP--CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCC------Ccc--hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 466778889999999999999853332 222 2344566 8889999888888888889999999998877665
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
. |...|++.+|..+|.++..++|..+.+|...|..+...|..++|+.+|..|-++-|........+|.-|...++++
T Consensus 321 Y---Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 Y---YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred H---HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 4 4445999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc-------cccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-------DADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
-|.++|.+++.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..- +.....+.++|.++.+++.+++|+..
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999998431 12345689999999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 301 (349)
+++++.+.|. +..++..+|.+|..+|+++.|+.+|.+++.+.|++..+...|+.+...
T Consensus 478 ~q~aL~l~~k---------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 478 YQKALLLSPK---------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHcCCC---------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999 899999999999999999999999999999999998887777765543
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-25 Score=168.72 Aligned_cols=310 Identities=11% Similarity=0.024 Sum_probs=254.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
++-+...|++..|+..|..+++ .+|++ +.+++..|.+|+.+|+-.-|+.-+.+++++.|+...+....
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve------~dp~~---Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR--- 112 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVE------GDPNN---YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR--- 112 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHc------CCchh---HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh---
Confidence 3456678899999999999884 33333 26788999999999999999999999999999887764433
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHH---HH------------HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLG---VW------------TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
+.++.++|.+++|..-|+.+++.+|++.. +. ......+...|+...|++.....+++.|-+...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 45577789999999999999998885422 22 2233445667899999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHH----------
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK---------- 217 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---------- 217 (349)
...+.+|...|++..|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986443311
Q ss_pred --HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 218 --LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 218 --l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
-+.-....++|.+++...++.++..|. ..+.....+..+..|+..-|++.+|+..+.+++.++|++..++...
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~-----~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPE-----ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCc-----ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 123345678888899999999988887 2233455566678899999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 296 RSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 296 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
+..+.....++.|+..|+++.+.+|++..+...+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 9999999999999999999999999998766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-27 Score=189.49 Aligned_cols=261 Identities=19% Similarity=0.200 Sum_probs=124.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+++...|++++|++++.+.+.... ++++. ..|..+|.+....++++.|+..|++++..++.++.....+..+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~----~~~~~---~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIA----PPDDP---EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc----ccccc---ccccccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999999977663331 11121 4688899999999999999999999999988877765444444
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~ 160 (349)
...+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++...|++
T Consensus 88 ----~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 88 ----LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ----ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 346999999999999988665 46777788889999999999999999987654 67789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
++|+..++++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.++++++.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 241 KLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
..|. ++..+..+|.++...|+.++|..+.++++..
T Consensus 243 ~~p~---------d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPD---------DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT----------HHHHHHHHHHHT------------------
T ss_pred cccc---------ccccccccccccccccccccccccccccccc
Confidence 9998 8999999999999999999999999988653
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=170.72 Aligned_cols=277 Identities=13% Similarity=0.115 Sum_probs=250.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhh-------chHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEE-------TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+++..++...|-......++..- .-..-|++-..++.+|.+.|.+.+|.+.++.+++..|. ++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 345667777777766666554421 12234677788999999999999999999999998775 8899999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|.+..++..|+..+.+.++..|.+...+..++.++..++++++|+++|+.+++.+|.+.++...+|.-|+-.++++-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+|++.+++.-.+++.+.++|.|+...++++-++..|++++....+ .....++|+++|.+....|++.-|..+|+
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~------~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ------PGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC------cchhhhhhhccceeEEeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999987654 33478999999999999999999999999
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCC
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKF 330 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 330 (349)
-++..++++.+++.+|+.+..+.|+.++|..++..+-...|+-.+...++-
T Consensus 420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 999999999999999999999999999999999999999999877776653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=189.77 Aligned_cols=218 Identities=17% Similarity=0.099 Sum_probs=199.1
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM---------KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
.+++++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 46788999999999999999999999999887643 348999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877777777888999999999999999
Q ss_pred hcc-cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 240 SKL-DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
... |. .+..+..+|.++...|++++|...+.++....|....+...++.++...|+ .|...+++.++
T Consensus 434 ~~~~p~---------~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 434 SQHLQD---------NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred Hhcccc---------CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 875 55 688899999999999999999999999999999999999999999888884 77776766554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-23 Score=175.58 Aligned_cols=295 Identities=10% Similarity=0.007 Sum_probs=238.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHH-HHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE-AKSLLR 80 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~l~ 80 (349)
+|.+....|+++.|.+.+.++.+. .|++. ..+...|.++..+|+++.|..++.++.+..|++.. .....
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~------~~~~~---~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~- 159 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADH------AAEPV---LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR- 159 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhc------CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH-
Confidence 456677899999999999887732 22221 35677899999999999999999999988888753 32222
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHH----HHHHHHHHH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW----YGLGQTYEI 156 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~l~~~~~~ 156 (349)
+..+...|+++.|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++... .....-+..
T Consensus 160 --a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 --TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred --HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34455579999999999999999999999999999999999999999999999998643333222 122222244
Q ss_pred hCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHH--HHHHHHHHhcCcHHH
Q psy9209 157 LRLPYYGLYYYKQAHMVRP----NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKAL--FKLAKLYDKLNETEA 230 (349)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~l~~~~~~~~~~~~ 230 (349)
.+..+++...+.++....| +++..+..++..+...|++++|...++++++..|++.... ..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 4555666678888888777 5889999999999999999999999999999999887532 223333445688899
Q ss_pred HHHHHHHHHhcccccCCCCCCcchH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHcccCChHHHHHHHHHHHHHcCCCC
Q psy9209 231 AADLFMEFVSKLDTFAAPPDKTCGF--FAFKYLANHHLKANNLDTAYKCAQ--KCLQHEETAEEAKSLLRSIAQKRQPDE 306 (349)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~a~~~~~~~~~~~~~l~~~~~~~~~~~ 306 (349)
+++.++++++..|+ ++ ..+..+|.++.+.|++++|.++|+ .+++..|+... ...++.++...|+.+
T Consensus 318 ~~~~~e~~lk~~p~---------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 318 LEKLIEKQAKNVDD---------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKA 387 (409)
T ss_pred HHHHHHHHHHhCCC---------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHH
Confidence 99999999999998 67 888899999999999999999999 57788888877 449999999999999
Q ss_pred CchhHHHHhhhc
Q psy9209 307 SSSQPMECAVVL 318 (349)
Q Consensus 307 ~A~~~~~~a~~~ 318 (349)
+|.+++++++..
T Consensus 388 ~A~~~~~~~l~~ 399 (409)
T TIGR00540 388 EAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=155.00 Aligned_cols=205 Identities=19% Similarity=0.107 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhCHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 191 QEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|++++..+|+ .+.....++..++..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~---------~~~~~l~~a~~~~~~ 186 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ---------FPPALLELARLHYKA 186 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---------CChHHHHHHHHHHhc
Confidence 77777777777777765 3455667777777777777777777777777777777 677777777777777
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
|++..|..++++.....+-..+.+.+...+....|+.+.+..+=.+.....|..++
T Consensus 187 ~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 187 GDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 77777777777777666666666666667777777777777776666667776554
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=169.08 Aligned_cols=308 Identities=12% Similarity=0.115 Sum_probs=275.1
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
..|..+.-..++++++...|... ..|...+..+...|+...|...+.++++.+|++.+.|..-..+ ..
T Consensus 562 ~hgt~Esl~Allqkav~~~pkae---------~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl---e~ 629 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPKAE---------ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL---EF 629 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCcch---------hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH---hh
Confidence 35777777788888886555333 5788888899999999999999999999999988887655444 44
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
...+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++++++..|.....|..+|+++..+++.+.|...|
T Consensus 630 en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred ccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 568899999999999987776 6788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 247 (349)
...++..|..+..|..++.+-...|+.-.|...++++.-.+|++...|......-.+.|+.++|...+.++++..|.++.
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998751
Q ss_pred ---------------------CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCC
Q psy9209 248 ---------------------PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE 306 (349)
Q Consensus 248 ---------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 306 (349)
......++.++...|.++....++++|.++|.++++.+|++.++|.++-..+...|.-+
T Consensus 789 LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 12233467888999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHhhhcCCCCCCcccc
Q psy9209 307 SSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 307 ~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
+-.+.+.+....+|.+...|..
T Consensus 869 d~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 869 DQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHhccCCCCCcHHHH
Confidence 9999999999999998876654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=168.49 Aligned_cols=242 Identities=16% Similarity=0.052 Sum_probs=183.8
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChH
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 127 (349)
....+..+.++..+.+++...|-++.. ...+...|..+...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 334466788999999999644322211 1224455566777799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 128 AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.+..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998742221 22344577899999999877655
Q ss_pred ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 208 GDADGKALFKLAKLYDKLNETEAAADLFMEFV-------SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
.+... |. .+.+....|+..++ ..++.+. +..|. ..++|+.+|.++...|++++|+.+|++
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~---------~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAER---------LCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH---------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33222 22 34555556666443 2333333 33333 678999999999999999999999999
Q ss_pred HHcccC-ChHHHHHHHHHHHHHcCC
Q psy9209 281 CLQHEE-TAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 281 a~~~~~-~~~~~~~~l~~~~~~~~~ 304 (349)
+++.+| +..+....+..+....+.
T Consensus 262 Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 262 ALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHhh
Confidence 999986 777777766666554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=170.87 Aligned_cols=293 Identities=12% Similarity=0.099 Sum_probs=231.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|-+....|++++|.+...+.-+ ....| . ..+...+......|+++.|..++.++.+.+|++....... .
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~----~~~~p---~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~--~ 159 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNAD----HAEQP---V--VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEIT--R 159 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh----cccch---H--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHH--H
Confidence 3445567999999977765442 11111 1 2344456666999999999999999999988875443222 2
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHH--------HHHHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR--------AWYGLGQTY 154 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------~~~~l~~~~ 154 (349)
+..+...|++++|+..+++..+.+|+++.++..++.+|...|++++|++.+.+..+..+.++. ++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445566799999999999999999999999999999999999999999999998876554332 222222222
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
....+.+...+.++..-...|+++.+...++..+...|+.++|...++++++..| ++......+.+ ..++.++++..
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHH
Confidence 2334445555566665566778999999999999999999999999999999544 55555445544 45999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
.++.++..|+ ++..+..+|.++...|++++|..+|+++++..|+... +..++.++...|+.++|..+|++
T Consensus 317 ~e~~lk~~P~---------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 317 LRQQIKQHGD---------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHhhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998 8999999999999999999999999999999999765 55899999999999999999999
Q ss_pred hhhcC
Q psy9209 315 AVVLD 319 (349)
Q Consensus 315 a~~~~ 319 (349)
++.+.
T Consensus 387 ~l~~~ 391 (398)
T PRK10747 387 GLMLT 391 (398)
T ss_pred HHhhh
Confidence 98764
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=165.70 Aligned_cols=281 Identities=13% Similarity=0.118 Sum_probs=239.6
Q ss_pred hHHhhCcHHHHHHHHHHHHHh--ccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSK--LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+|...+|...|.......++. ..+.. ......-++--..+|.||+..|.+.+|.+.++.+++..|. ++.+ ..+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~-~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTf---llL 262 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSG-STGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTF---LLL 262 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccc-cccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHH---HHH
Confidence 455677777777665555431 11111 1111111233456999999999999999999999987765 3443 334
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+.+|.+..++..|+..+.+.++..|.+......++.++..++++++|.++|+.+++.+|.+.++.-.+|..|+..++++-
T Consensus 263 skvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHH
Confidence 45677779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc--c-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG--D-ADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
|+.+|++.+++.-.+++.+.++|.|.+..++++-++..|++++... | .-.++|+++|.+....|++.-|..+|+-++
T Consensus 343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999873 3 357899999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 299 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 299 (349)
..+++ +.+++.+||.+-.+.|+.++|..+++.+....|+-.+...+++.+.
T Consensus 423 ~~d~~---------h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 423 TSDAQ---------HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred ccCcc---------hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 99998 8999999999999999999999999999999998877776665443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=164.64 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..+..+|.+++..|++++|+..|+++.-++|........++.+ +...|+++.-...-...+..+.....-|+.-+..
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 4688899999999999999999999999999888776555544 3345777777777777777666666667777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
.+..+++..|+.+-++++..+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.|..+..+|...|++.+|..
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHccccccHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLA-KLYD-KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKC 277 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 277 (349)
.-+.+++.-|.++.++..+| .++. .-.--++|.+++++++.+.|. ...+-..++.++...|.+++++..
T Consensus 390 ~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---------Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 390 LANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---------YTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc---------cHHHHHHHHHHHHhhCccchHHHH
Confidence 77777777777777777765 3332 222346777777777777777 677777777777777777777777
Q ss_pred HHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcccc
Q psy9209 278 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 278 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
+++.+...|+. ..+..||++....+.+++|+++|..++.++|++......
T Consensus 461 Le~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 461 LEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 77777766553 456677777777777777777777777777777665443
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-23 Score=166.97 Aligned_cols=303 Identities=18% Similarity=0.130 Sum_probs=214.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+...+..|+++.|+..|.+++..-|++. ..|.+...+|...|+|++|+.--.+.++++|+-+..+.-.+..
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nh---------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa 79 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNH---------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAA 79 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCcc---------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHH
Confidence 4566778889999999988884333221 3566677777777777777777777777777777765554444
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHH----------------------------------------------
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLL---------------------------------------------- 116 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---------------------------------------------- 116 (349)
... .|++++|+..|.+.++.+|++......+
T Consensus 80 ~~~---lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 80 LFG---LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHh---cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 333 4777777777777777666644444333
Q ss_pred --------------------------------------------------------------------------HHHHHh
Q psy9209 117 --------------------------------------------------------------------------GHEYME 122 (349)
Q Consensus 117 --------------------------------------------------------------------------a~~~~~ 122 (349)
|.....
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444
Q ss_pred cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhhCHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-------RMLTALGEAFEKQEKIS 195 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 195 (349)
..+++.|++.|..+++++ .+...+.+.+.+|...|.+.+++....++++...... .+...+|..+...++++
T Consensus 237 kk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 444555555555555555 4555555555555555555555555555444332211 22334566777788888
Q ss_pred HHHHHHHHHHccccc--------------------------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 196 EAMKCYNKSRAIGDA--------------------------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
.|+.+|++++..... -..--..-|..++..|+|..|+..|.+++..+|+
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~----- 390 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE----- 390 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-----
Confidence 889888888764221 1222344588888999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
++..|.+.|.+|.+.|.+..|+...+++++++|+...++..-|.++..+.++++|++.|+++++.+|++..+..
T Consensus 391 ----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 391 ----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred ----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-23 Score=149.81 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=163.4
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 75 AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
+......++..|...|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 33445556667777788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMV--RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
+.+|++++|...|++++.. .+..+.++-++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888888764 44556778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
.++++.....+. ....+.....+-...|+-+.|.++=.+.....|...+..
T Consensus 194 ~~~~~~~~~~~~---------~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 194 LYLERYQQRGGA---------QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHHhcccc---------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 888777766554 577777777777778888888777777777777765543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=168.20 Aligned_cols=227 Identities=11% Similarity=-0.032 Sum_probs=183.9
Q ss_pred CCCcchHHHHHHHHHHHhhCc---c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNP---N-YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~---~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
...+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 334677889999999996433 3 367899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999988742222 223456788999999998876543
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHH--HHHHHHH----HcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTA--YKCAQKC----LQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~a----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
+. .. |. .+.+....|+..++ +..+.+. .++.|...+++..+|.++...|++++|+.+|++++
T Consensus 196 ~~---------~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 196 DK---------EQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred Cc---------cc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 32 11 11 34555556665443 3223222 34566778999999999999999999999999999
Q ss_pred hcCC-CCCCcc
Q psy9209 317 VLDP-VPPSTR 326 (349)
Q Consensus 317 ~~~p-~~~~~~ 326 (349)
+.+| +....+
T Consensus 264 ~~~~~~~~e~~ 274 (296)
T PRK11189 264 ANNVYNFVEHR 274 (296)
T ss_pred HhCCchHHHHH
Confidence 9997 444433
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-23 Score=164.71 Aligned_cols=275 Identities=16% Similarity=0.134 Sum_probs=239.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
-...+-.+++.|+++.|+++++-.-..+.....+ ...+..+ ..+.--.++..|..+...++.++.-++.+..+.|.+-
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l-~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCAL-RFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHH-HHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 3456677889999999999887655444332222 1222222 1222245889999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+..+|+++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 99999999999999999999889999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 201 YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 201 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+.++..+-|++|.++..+|.+|-+.|+-.+|..++-......|. +.+..-.||..|....-+++|+.+|++
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~---------nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC---------NIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc---------chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888 788889999999999999999999999
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+--+.|+.......++.|+.+.|++..|.+.|+..-...|++.+.+
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 9999999999889999999999999999999999999999887643
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=158.83 Aligned_cols=281 Identities=15% Similarity=0.106 Sum_probs=245.9
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+++...|++.+|+..|+++. ..+|.... ..-..|..+...|+++.-...-...+.........|..-+..
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~------~~dpy~i~---~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTL------CANPDNVE---AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHh------hCChhhhh---hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 788999999999999999988 45565444 344557777889999988888888887765555555544433
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
.+..+++..|+.+-+++++.+|++..++...|.++...|+.++|+-.|+.+..+.|...+.|.+|..+|...|++.+
T Consensus 310 ---l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 310 ---LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred ---hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHH-HHHH-HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALG-EAFE-KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
|...-+.+++..|.++.++..+| .++. .-.--++|..++++++.+.|....+-..++.++...|.++.++..+++.+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 99999999999999999999886 4443 334458899999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCC
Q psy9209 241 KLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 305 (349)
..|+ ...+..||.++...+.+++|+.+|..++.++|++..+...+-.+.....+.
T Consensus 467 ~~~D----------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 467 IFPD----------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred hccc----------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 9886 788999999999999999999999999999999999888887766554433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-22 Score=178.18 Aligned_cols=146 Identities=12% Similarity=0.032 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHcccc------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-c-----CCCC
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGD------ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT-F-----AAPP 249 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~~~ 249 (349)
...|..|...+++++|+.+|++++...| ........|...+...+++++|..++++.....|. . ....
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 3455666666777777777777766442 12223456677777888888888888888775551 0 0123
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
..+........++.++...|+..+|.+.+++.+...|.+...+..++.++...|.+.+|...++.+..++|++..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 455567788888888999999999999999999999999999999999999999999999999888888888776544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=161.05 Aligned_cols=201 Identities=16% Similarity=0.091 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhCHHHHHHHHHHHHccc--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRAIG--DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
..|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|. ....+..+|.++..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~ 181 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---------RPESLLELAELYYL 181 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------ChHHHHHHHHHHHH
Confidence 7777777777777777642 345566777777777777777777777777777766 56677777777777
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
.|++++|..++++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777777777777777766667777777777777777777777766655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-22 Score=153.99 Aligned_cols=279 Identities=15% Similarity=0.105 Sum_probs=240.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH------
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA------ 75 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------ 75 (349)
||.+|...|+...|+..+.++++.-|... -+....|.+++++|.+++|..-|..++..+|.+...
T Consensus 78 RaT~yLAmGksk~al~Dl~rVlelKpDF~---------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk 148 (504)
T KOG0624|consen 78 RATVYLAMGKSKAALQDLSRVLELKPDFM---------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK 148 (504)
T ss_pred HHHHHhhhcCCccchhhHHHHHhcCccHH---------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 68899999999999999999994333222 468889999999999999999999999998854322
Q ss_pred ------HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH
Q psy9209 76 ------KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149 (349)
Q Consensus 76 ------~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 149 (349)
...+......+...|+...|+......+++.|-+...+...+.+|...|++..|+..++.+-++..++.+.++.
T Consensus 149 l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 149 LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 12233334456668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH------------HHHHHHHhhCHHHHHHHHHHHHccccccHHH---
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTA------------LGEAFEKQEKISEAMKCYNKSRAIGDADGKA--- 214 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--- 214 (349)
++.+++..|+.+.++...+++++++|+....+-. -+.-....++|.++++..+++++.+|..+.+
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 9999999999999999999999999998654322 2344556789999999999999999985543
Q ss_pred -HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 215 -LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 215 -~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
...+..|+..-|++.+|+....+++.++|+ +..++...+..|.....|+.|+.-|+++.+.++++..+..
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~---------dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDIDPD---------DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhcCch---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 345677888999999999999999999998 8999999999999999999999999999999999988776
Q ss_pred HHHHH
Q psy9209 294 LLRSI 298 (349)
Q Consensus 294 ~l~~~ 298 (349)
.+-..
T Consensus 380 Gle~A 384 (504)
T KOG0624|consen 380 GLERA 384 (504)
T ss_pred HHHHH
Confidence 66544
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=171.53 Aligned_cols=255 Identities=15% Similarity=0.109 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME 122 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 122 (349)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.. ....++-..|+..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~---qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGIT---QAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhH---hhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999998877754 5556888999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCcccHHHHHH-------HHHHHHHhCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhC
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDYRAWYG-------LGQTYEILRLPYYGLYYYKQAHMVRP--NDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 193 (349)
.|.-.+|++++.+-+...|........ ..........+..-.+.|..+....| .++++...||.+|...|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999999999877653211100 00001111123344566777777777 789999999999999999
Q ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH
Q psy9209 194 ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (349)
|++|+.+|+.++...|++...|..||-.+....+.++|+..|++++++.|. ...++++||..++..|.|++
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---------yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG---------YVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---------eeeeehhhhhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHcccCC----------hHHHHHHHHHHHHHcCCCCCch
Q psy9209 274 AYKCAQKCLQHEET----------AEEAKSLLRSIAQKRQPDESSS 309 (349)
Q Consensus 274 A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~ 309 (349)
|.++|-.++.+.+. +..+|..|..+....++.+.+.
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 99999999987543 2467888887777777776443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-22 Score=159.77 Aligned_cols=284 Identities=17% Similarity=0.163 Sum_probs=245.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhhhchHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA--NNLDTAYKCAQKCLQHEETAEEAKSLL 79 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~l 79 (349)
+|--|+++|+++.|++++.- ++.-+ +.....+-.++...++.+ .++..|..+...++..+.-++.+...-
T Consensus 425 ka~~~lk~~d~~~aieilkv-~~~kd-------nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nk 496 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKV-FEKKD-------NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNK 496 (840)
T ss_pred HHHHHHhccCHHHHHHHHHH-HHhcc-------chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcC
Confidence 35568899999999998743 32211 111113445555555554 368899999999998887777774444
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
++ .-+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+
T Consensus 497 gn---~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 497 GN---IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred Cc---eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 44 445579999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
..+|++++.++..+-|++|.++..+|.+|-+.|+-.+|..++-......|.+.+..-.+|..|....-+++|+.+|+++-
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCC
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 305 (349)
-+.|+ .......++.|+.+.|+|.+|...|+..-...|.+.+.+..|.++.-.+|-.
T Consensus 654 liqp~---------~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 654 LIQPN---------QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred hcCcc---------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99998 6777778899999999999999999999999999999888888877766643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=175.85 Aligned_cols=273 Identities=12% Similarity=-0.009 Sum_probs=207.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM 121 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 121 (349)
+..+|.++...|++++|++.|+++++.+|+++.++. .++..+...++.++|++.++++...+|..... ..++.++.
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~---gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~ 180 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLIS---GMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHH
Confidence 334466777777777777777777777777766643 23444555577777777777777766664333 44444554
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHH----------------------------------------------------
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYG---------------------------------------------------- 149 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~---------------------------------------------------- 149 (349)
..++..+|++.++++++.+|++..++..
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4556655777777776666543332222
Q ss_pred ------------------------------------------------------------------------HHHHHHHh
Q psy9209 150 ------------------------------------------------------------------------LGQTYEIL 157 (349)
Q Consensus 150 ------------------------------------------------------------------------l~~~~~~~ 157 (349)
.|..|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 24444466
Q ss_pred CCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc---------------ccHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVRP------NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD---------------ADGKALF 216 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~ 216 (349)
+++++|+.+|..++...| .+......|...+...+++++|..++++..+..| +......
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 666777777777766442 1223346778889999999999999999988544 3356778
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHH
Q psy9209 217 KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 296 (349)
Q Consensus 217 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 296 (349)
.++.++...|++.+|++.+++.+...|. +..+...+|.++...|.+.+|...++.+..++|.+..+...++
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~---------n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPA---------NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 8899999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 297 SIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 297 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
.++..+|++.+|....+.+++..|+++.+..
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999999987543
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-21 Score=163.75 Aligned_cols=306 Identities=17% Similarity=0.095 Sum_probs=274.0
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|+.+.+.+-++-|+.+|..+++..+... ..|...+..--..|..++-..++++++...|..+..|..+..-
T Consensus 523 a~~~~k~~~~~carAVya~alqvfp~k~---------slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVFPCKK---------SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhccchh---------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 4566778888999999999996665544 5788888777888999999999999999999887776655544
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+...|+...|...+.++++.+|++.+.|+.-..+.....+++.|..+|.++....| ...+|+.-+.+...+++.++
T Consensus 594 ---~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 594 ---KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEE 669 (913)
T ss_pred ---HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHH
Confidence 33459999999999999999999999999999999999999999999999998766 57889999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+.+++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|+...|...++++.-.+
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh------------------------------HHHH
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA------------------------------EEAK 292 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------------~~~~ 292 (349)
|. +...|.....+-.+.|+.+.|.....++++-.|++ +.+.
T Consensus 750 Pk---------~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 750 PK---------NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred CC---------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 99 89999999999999999999999999998876654 5556
Q ss_pred HHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCC
Q psy9209 293 SLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKF 330 (349)
Q Consensus 293 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 330 (349)
..++.++....+++.|.++|.++++.+|++.++|..++
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 66778888888899999999999999999999887654
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-21 Score=159.44 Aligned_cols=294 Identities=17% Similarity=0.153 Sum_probs=244.4
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
|+-.|...|+|++|+..-.+.++..|.-. ..|..+|..+.-.|+|++|+..|.+.|+.+|++......+..
T Consensus 42 rsaa~a~~~~~~~al~da~k~~~l~p~w~---------kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 42 RSAAYASLGSYEKALKDATKTRRLNPDWA---------KGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQ 112 (539)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhcCCchh---------hHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHH
Confidence 45678899999999998888884333222 569999999999999999999999999998887554322211
Q ss_pred --------------------------------------------------------------------------------
Q psy9209 82 -------------------------------------------------------------------------------- 81 (349)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (349)
T Consensus 113 a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~ 192 (539)
T KOG0548|consen 113 AYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIE 192 (539)
T ss_pred hhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccc
Confidence
Q ss_pred -------------------------------------HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC
Q psy9209 82 -------------------------------------IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK 124 (349)
Q Consensus 82 -------------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 124 (349)
++...++..++..|++.|..++.++ .+...+.+.+.+|...|
T Consensus 193 ~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 193 ILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG 271 (539)
T ss_pred cCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc
Confidence 1122223557888999999999999 77888899999999999
Q ss_pred ChHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----------------------
Q psy9209 125 NTNAAIQCYRQAIEINNLD-------YRAWYGLGQTYEILRLPYYGLYYYKQAHMVR----------------------- 174 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------- 174 (349)
.+.+.+....++++..... ..+...+|..|...++++.|+.+|.+++...
T Consensus 272 ~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 272 KYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKA 351 (539)
T ss_pred HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988865433 2334456778888899999999999988753
Q ss_pred ---CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 175 ---PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 175 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
|.-..--...|..++..|+|..|+..|.+++..+|+++..|.+.|.||.++|.+..|+...+.+++++|+
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------- 424 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------- 424 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-------
Confidence 2222334556899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
....|..-|.++..+.+|++|++.|+++++.+|++.++...+..|...+.......+..++
T Consensus 425 --~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 425 --FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 8999999999999999999999999999999999999999999999876555666666666
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-22 Score=157.04 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=134.2
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
..++..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|+
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 33444455556666666666666666666666667777777777777777777777777777666677777777777777
Q ss_pred HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVR--PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
+++|+..+++++... +.....+..+|.++...|++++|...+++++...|.++..+..+|.++...|++++|...+++
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776642 344556666777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
++...|. .+..+..++.++...|+.++|..+.+.+...
T Consensus 195 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQTYNQ---------TAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhCCC---------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7766554 4566666777777777777777766665443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=164.66 Aligned_cols=311 Identities=15% Similarity=0.109 Sum_probs=251.3
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhhhhchH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA-----------NNLDTAYKCAQKCLQHEETAE 73 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~ 73 (349)
++.+.|.+++++.+.++++....... .......+..+|.+|..+ ....+++..++++++.+|+++
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~----~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQR----SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhh----hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 34567899999999999996442111 111125678888887543 235678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh-CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHH
Q psy9209 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKL-NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152 (349)
Q Consensus 74 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 152 (349)
.+.+. ++..|...++.+.|+...+++++. ..+++.+|..++.++...+++.+|+.+...+++-.|+|.........
T Consensus 479 ~~if~---lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFY---LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHH---HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 87444 444455568999999999999999 55678999999999999999999999999999988876544444444
Q ss_pred HHHHhCCHHHHHHHHHHHHhc-----------------------------------------------------------
Q psy9209 153 TYEILRLPYYGLYYYKQAHMV----------------------------------------------------------- 173 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~----------------------------------------------------------- 173 (349)
+-...++.++|+..+...+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 444455555554443333222
Q ss_pred -----CCCC-----hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 174 -----RPND-----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 174 -----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
.|+. ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|++.+|...|..++.++|
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 0111 135667888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHH--HHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK--CAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
+ ++.+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.+...+|+.+.|.++|..++++++.
T Consensus 716 ~---------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 716 D---------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred C---------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9 89999999999999998888888 999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCC
Q psy9209 322 PPSTRSSKFP 331 (349)
Q Consensus 322 ~~~~~~~~~~ 331 (349)
+|......+|
T Consensus 787 ~PV~pFs~ip 796 (799)
T KOG4162|consen 787 NPVLPFSNIP 796 (799)
T ss_pred CCcccccccC
Confidence 9876555443
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-21 Score=163.68 Aligned_cols=287 Identities=16% Similarity=0.125 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..+...|+..+..|++++|..++.+++..+|.++.++..++.+ |...|+.+++....-.+-.++|.+.+.|..++..
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~I---yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEI---YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHH---HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4677888889999999999999999999999999997777655 5557999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhhCH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQEKI 194 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~ 194 (349)
..++|++++|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|... ..-...+..+...++-
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999998322 2233457777788888
Q ss_pred HHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccc-------------------C-----
Q psy9209 195 SEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL--DTF-------------------A----- 246 (349)
Q Consensus 195 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-------------------~----- 246 (349)
+.|++.++.++.. +....+.+..++.++....+++.|........... ++. +
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999999884 22234456677788888888888877766554410 000 0
Q ss_pred -----------------------------CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC-ChHHHHHHHH
Q psy9209 247 -----------------------------APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE-TAEEAKSLLR 296 (349)
Q Consensus 247 -----------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 296 (349)
...........+..++..+...|++.+|+.++..+....+ .+..+|..+|
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 0111345678899999999999999999999999988765 4578999999
Q ss_pred HHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 297 SIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 297 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
.|+..+|.+++|+++|++++.+.|++.+++..+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 999999999999999999999999999987766
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=166.09 Aligned_cols=247 Identities=16% Similarity=0.125 Sum_probs=208.3
Q ss_pred chHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---
Q psy9209 71 TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL--------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--- 139 (349)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 139 (349)
.+|........++..|...|++++|+..++.++.+ .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444555666778888899999999999999998 5655666677999999999999999999999986
Q ss_pred -----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 140 -----NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR--------PNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 140 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+|....++.+||.+|...|++++|..++++++++. |.-...+..++.++...+++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45557789999999999999999999999999873 22345678899999999999999999999988
Q ss_pred c--------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 207 I--------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 207 ~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
+ ++.-+.++.++|.+|..+|++++|.+++++++.+..... ...+......+..+|..+.+.+++.+|...|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~-~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL-GKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-cCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 7 234467889999999999999999999999999875421 2224456788999999999999999999999
Q ss_pred HHHHcc-------cCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 279 QKCLQH-------EETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 279 ~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
..+..+ .|+....+.+|+.+|..+|+++.|+++.++++..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 998765 3566788899999999999999999999998743
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=161.26 Aligned_cols=243 Identities=21% Similarity=0.184 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-----hchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--------C
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHE-----ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL--------N 106 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--------~ 106 (349)
.+...++..|...|++++|+..++.+++.- -+++.....+..++..|...+++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 466779999999999999999999999871 123344444556788888899999999999999976 3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN--------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV----- 173 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 173 (349)
|....++.+||.+|...|++.+|..++++++++. |.-...+..++.++...+++++|..++++++++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 5556788999999999999999999999999873 334567888999999999999999999999887
Q ss_pred ---CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc--------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 174 ---RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG--------DADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 174 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
+|.-+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|...|.++..+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22345788999999999999999999999999873 3345678899999999999999999999999887
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+.. ..+++.....+.+|+.+|..+|++++|+++.++++..
T Consensus 440 ~~~--g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLC--GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHh--CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 443 4556778999999999999999999999999998753
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=156.14 Aligned_cols=205 Identities=11% Similarity=0.075 Sum_probs=186.9
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH--HHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK-NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP--YYGLY 165 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~ 165 (349)
.+..++|+..+.++++++|.+..+|..++.++..+| ++++++..++++++.+|++..+|...+.++...|+. ++++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 478889999999999999999999999999999998 689999999999999999999999999999988874 78899
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc---CcH----HHHHHHHHHH
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL---NET----EAAADLFMEF 238 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~ 238 (349)
+++++++.+|.+..+|...+.++...|++++++.++.++++.+|.+..+|..++.+.... |.+ ++++.+..++
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988765 333 4688888899
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLK----ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
+..+|+ +..+|..++.++.. .++..+|...+.+++...|.++.+...|+.++...
T Consensus 210 I~~~P~---------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 210 ILANPR---------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhCCC---------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 999999 89999999999988 45667899999999999999999999999999853
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=165.22 Aligned_cols=263 Identities=17% Similarity=0.193 Sum_probs=212.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.+..+++.|+..+|+-.|+.++. .+|.+. .+|..||.+....++-..|+..++++++++|++.++ +..
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVk------qdP~ha---eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea---Lma 358 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVK------QDPQHA---EAWQKLGITQAENENEQNAISALRRCLELDPTNLEA---LMA 358 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHh------hChHHH---HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHH---HHH
Confidence 35678899999999999999994 444443 689999999999999999999999999999999888 556
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHH-------HHHHHHhcCChHHHHHHHHHHHHhCc--ccHHHHHHHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTL-------LGHEYMEMKNTNAAIQCYRQAIEINN--LDYRAWYGLGQ 152 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~ 152 (349)
++..|...|.-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 6677888899999999999999888763211110 00011111223445667777777777 68999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
+|...|+|++|+.+|+.++...|++...|..+|-.+....+.++|+..|++|+++.|....++++||..++.+|.|++|.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCc-chHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPDKT-CGFFAFKYLANHHLKANNLDTAYK 276 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 276 (349)
++|-.++.+.+........+ ....+|..|-.++...++.+-+..
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999877621111111 124567777677777777664443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=157.51 Aligned_cols=272 Identities=11% Similarity=-0.041 Sum_probs=223.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH-HHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL-GVWTLLGHE 119 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~ 119 (349)
.....|......|+++.|.+.+.++.+..|+....+...+ ......|+++.|..++.++.+..|+.. .+....+.+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA---~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAA---EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3466788888999999999999999988887655543333 445557999999999999999988875 466667999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH----HHHHHHHHhhCHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT----ALGEAFEKQEKIS 195 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~ 195 (349)
+...|++++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987555544332 2222224455556
Q ss_pred HHHHHHHHHHcccc----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH--HHHHHHHHHHhC
Q psy9209 196 EAMKCYNKSRAIGD----ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA--FKYLANHHLKAN 269 (349)
Q Consensus 196 ~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 269 (349)
++...+.++....| +++..+..++..+...|++++|...++++++..|+ .... ...........+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd---------~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD---------DRAISLPLCLPIPRLKPE 313 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---------cccchhHHHHHhhhcCCC
Confidence 66778888888777 58999999999999999999999999999999988 2321 122333334458
Q ss_pred CHHHHHHHHHHHHcccCChH--HHHHHHHHHHHHcCCCCCchhHHH--HhhhcCCCCCC
Q psy9209 270 NLDTAYKCAQKCLQHEETAE--EAKSLLRSIAQKRQPDESSSQPME--CAVVLDPVPPS 324 (349)
Q Consensus 270 ~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~p~~~~ 324 (349)
+.+.+++.++++++..|+++ .....+|.++...|++++|.++|+ ++++..|++..
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 89999999999999999999 889999999999999999999999 68888887754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-20 Score=148.99 Aligned_cols=242 Identities=11% Similarity=0.080 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE-SSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
++..+-.++...+..++|+..+.+++.++|++..+|...+.+...+ | ++++++..+.++++.+|++..+|..++.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L---~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEAL---DADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 4444555567788999999999999999999999988777665443 5 68999999999999999999999999999
Q ss_pred HHhcCCh--HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---hCH
Q psy9209 120 YMEMKNT--NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ---EKI 194 (349)
Q Consensus 120 ~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 194 (349)
+...|+. ++++.+++++++.+|++..+|...+.++...|+++++++++.++++.+|.+..+|...+.++... |.+
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 9999874 78899999999999999999999999999999999999999999999999999999999998776 333
Q ss_pred ----HHHHHHHHHHHccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 195 ----SEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 195 ----~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
++++.+..+++..+|++..+|..++.++.. .++..+|...+.+++...|. .+.++..|+.+|.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~---------s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN---------HVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC---------cHHHHHHHHHHHH
Confidence 578899999999999999999999999988 45667899999998887777 7889999999998
Q ss_pred HhC------------------CHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 267 KAN------------------NLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 267 ~~g------------------~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
... ..++|...++..-+.+|-....|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 643 2356777777776666655555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-19 Score=136.36 Aligned_cols=268 Identities=16% Similarity=0.127 Sum_probs=172.1
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch--HHHHHHHHHHHHh
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQK 85 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~ 85 (349)
-.++.++|++.|.++++ .+|.. +.+...+|..+...|..+.|+.+-+..+. .|+. ..-...+..++.-
T Consensus 47 Ls~Q~dKAvdlF~e~l~------~d~~t---~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ------EDPET---FEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred hhcCcchHHHHHHHHHh------cCchh---hHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 34566677777776663 12211 24566777777777777777776655543 2322 2223345556666
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCCH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEILRLP 160 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~ 160 (349)
|+..|-++.|...|....+...--..+...+..+|....+|++|++.-++..++.+.. ...+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 6666777777777777665544455666677777777777777777777777665543 33455666666666777
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-GKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+.|...+.++++.+|+...+-..+|.+....|+|+.|++.++.+++.+|.. +.+.-.+..+|.++|+.++.+.++.++.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776653 4566666777777777777777777777
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
+..+. ..+-..++..-....-.+.|..++.+-+...|+-...+..+
T Consensus 277 ~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 277 ETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred HccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 76664 45555566666666666667777666666666654444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=139.34 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=229.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc-----HHHHHHHH
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY-----LGVWTLLG 117 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la 117 (349)
+..|..+.-.++.++|+..|..+++.+|...++...++++ +.+.|..+.|+...+..+. .|+. ..+...+|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnL---fRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNL---FRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHH---HHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHH
Confidence 4567788888999999999999999999999988878777 5556999999998877665 4543 34678999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhh
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQE 192 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~ 192 (349)
.-|+..|-++.|...|....+...--..+...|..+|....+|++|++.-++..++.+..- ..++.++..+....
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999886666678899999999999999999999999999987654 46778888888899
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
+.+.|+..+.++++.+|+...+-..+|.+....|+++.|++.++.+++.+|.. .+.+...|..+|.+.|+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y--------l~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY--------LSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH--------HHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999985 7889999999999999999
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 273 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 273 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
+...++.++.+..+.. ++...++.+-....-.+.|..++.+-+...|+-
T Consensus 267 ~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 267 EGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 9999999999987654 334445555555555677777777777777753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-19 Score=151.61 Aligned_cols=269 Identities=13% Similarity=0.019 Sum_probs=211.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHH-HHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVW-TLLGHE 119 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~la~~ 119 (349)
..+..|......|++++|.+...+.-...+ .+.....+ .+......|+++.|..++.++.+.+|+..... ...+.+
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~ll--aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLL--AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 356677788888999999977776544322 23333222 23333557999999999999999999875433 455999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH--------HHHHHHHHh
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT--------ALGEAFEKQ 191 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~ 191 (349)
+...|++++|...+++..+..|+++.++..++.+|...|++++|+..+.+..+..+.++.... .+.......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988776554322 111111122
Q ss_pred hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
.+-+.....++..-...|+++.+...++..+...|+.++|...++++++..++ +......+.+ ..++.
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~----------~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD----------ERLVLLIPRL--KTNNP 310 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------HHHHHHHhhc--cCCCh
Confidence 23334444444444446778999999999999999999999999999995543 4444334443 44999
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 272 DTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 272 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
++++...++.++..|+++..+..+|.++...+++++|.++|+++++..|++..
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-18 Score=159.89 Aligned_cols=293 Identities=12% Similarity=0.088 Sum_probs=195.7
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRSI 82 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~ 82 (349)
.|.+.|+.++|..+|+++.+. ...|+. .+|..+...|.+.|++++|+..|.++... .|+. .. +..+
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~----Gv~Pdv----vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-vT---YnsL 548 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNA----GVEANV----HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-VV---FNAL 548 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc----CCCCCH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-HH---HHHH
Confidence 455666666666666665521 112221 45666777777777777777777766543 3432 12 2233
Q ss_pred HHhcCCCcchHHHHHHHHHHHhh----CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKL----NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 157 (349)
...+.+.|++++|.+.+.++... .|+ ..++..+...|.+.|++++|.++|+++.+.+ +.+...|..+...|.+.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 33444557777777777777542 343 4566777777777777777777777777654 34566777777777778
Q ss_pred CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc-cccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMV--RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
|++++|+.+|.++.+. .| +...+..+...+.+.|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...
T Consensus 628 G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 8888888888777765 33 35567777777778888888888888777653 23566777888888888888888888
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cCChHHHHHHHHHHHHHcCCCCCchhHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRSIAQKRQPDESSSQPM 312 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 312 (349)
|+++...... .+...|..+...|.+.|++++|.+.|+++... .|+.. .+..+...+...|+.++|...+
T Consensus 707 f~eM~~~g~~--------PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~-Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 707 YEDIKSIKLR--------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-TYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHcCCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHH
Confidence 8877653211 14677888888888888888888888877643 45544 3444446777788888888888
Q ss_pred HHhhhcCC
Q psy9209 313 ECAVVLDP 320 (349)
Q Consensus 313 ~~a~~~~p 320 (349)
.++++...
T Consensus 778 ~~M~k~Gi 785 (1060)
T PLN03218 778 SQAKEDGI 785 (1060)
T ss_pred HHHHHcCC
Confidence 88776543
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-21 Score=150.02 Aligned_cols=275 Identities=11% Similarity=-0.017 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
+.-....|..++...+|..|+..+..++...|++...|. .-+..++..|++++|.-..++.+.++|..+..+...+.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~---nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYS---NRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhc---hhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 345678889999999999999999999999999966643 33344555699999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHH------------Hh------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAI------------EI------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~------------~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
++...++..+|.+.++..- .+ .|....+...-+.++...|++++|...--..+++++.+..+
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~a 205 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEA 205 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHH
Confidence 9999988888886665321 00 12234455667889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccccccH------------HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCC
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDADG------------KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAP 248 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 248 (349)
+...|.++...++.+.|+..|++++.++|+.. ..+-.-|+-..+.|++..|.+.|..++.++|.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~---- 281 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS---- 281 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----
Confidence 99999999999999999999999999999763 34556688889999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 249 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
....+...|.+++.+..+.|+..+|+.-.+.++.++|....++...|.|+..++++++|++.|+++++...+
T Consensus 282 -n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 282 -NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred -ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 355578899999999999999999999999999999999999999999999999999999999999988766
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-18 Score=158.23 Aligned_cols=291 Identities=10% Similarity=0.047 Sum_probs=231.8
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc-hHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET-AEEAKSLLRSIA 83 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~ 83 (349)
.+.+.|+++.|..+|.++.+. ...|+. .+|..+...|.+.|++++|..+|+++...... +...+ ..+.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~----Gl~pD~----~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy---naLI 514 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEA----GLKADC----KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF---GALI 514 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHc----CCCCCH----HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH---HHHH
Confidence 456778888888888887632 122222 56888888999999999999999988865321 23333 3333
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHh
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN--PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~ 157 (349)
..|.+.|++++|+..|.+..... |+ ..+|..+...+.+.|++++|.+.|.++... .| +...+..+...|.+.
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~ 592 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANA 592 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHC
Confidence 45666799999999999886643 43 678888999999999999999999998763 34 456788888899999
Q ss_pred CCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVR-PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|..+|+++.+. .| +...+..+...+.+.|++++|..+
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999998875 456788899999999999999999999998876 45 467888889999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cCChHHHHHHHHHHHHHcCCCCCchhHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRSIAQKRQPDESSSQPM 312 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 312 (349)
++++.+..... +...+..+...|.+.|++++|...|+++... .|+ ...|..+...+.+.|+.++|.+.|
T Consensus 672 ~~eM~k~G~~p--------d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 672 LQDARKQGIKL--------GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99988754321 5788999999999999999999999998653 444 566888889999999999999999
Q ss_pred HHhhhc
Q psy9209 313 ECAVVL 318 (349)
Q Consensus 313 ~~a~~~ 318 (349)
++....
T Consensus 743 ~eM~~~ 748 (1060)
T PLN03218 743 SEMKRL 748 (1060)
T ss_pred HHHHHc
Confidence 987654
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=149.62 Aligned_cols=304 Identities=14% Similarity=0.069 Sum_probs=217.7
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh--hchHHHHHHHHHHH
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE--ETAEEAKSLLRSIA 83 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~ 83 (349)
....|+++.+.+.|++++...-.. ...|+.++.++...|.-..|+...++.+... |.++....... .
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~---------~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas--k 401 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGE---------HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS--K 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhh---------HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH--H
Confidence 456788888888888877321111 1468888888888888888888888887776 54444432222 2
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHhCcccHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN-----PNYLGVWTLLGHEYMEMK-----------NTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
.+..+.+..++++.+..+++... --.+..+..+|.+|..+- ...+++..++++++.+|.|+.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 23334466666777776666532 112345555555554321 13456666666766677777777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---------------
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMV-RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD--------------- 211 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------- 211 (349)
+.++.-|...++.+.|..+..++++. ..+++.+|..++.++...+++.+|+.....++...|+|
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFN 561 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Confidence 77777666677777777777777766 33445666666666666666666666666555544431
Q ss_pred --------------------------------------------------------------------------------
Q psy9209 212 -------------------------------------------------------------------------------- 211 (349)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (349)
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence
Q ss_pred --------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 212 --------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 212 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
...|...+..+...++.++|..++.++-.+.|. .+..|+..|.++...|++.+|...|..++.
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL---------SASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 234556677777888888888888888888887 789999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHcCCCCCchh--HHHHhhhcCCCCCCccccC
Q psy9209 284 HEETAEEAKSLLRSIAQKRQPDESSSQ--PMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~a~~~~p~~~~~~~~~ 329 (349)
++|+++.....+|.++...|+..-|.. .+..+++++|.++.+|+.+
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 999999999999999999999988888 9999999999999999876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=165.34 Aligned_cols=286 Identities=9% Similarity=-0.004 Sum_probs=236.5
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLRS 81 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~l~~ 81 (349)
..|.+.|++++|..+|++.. . ++ ..+|..+...|.+.|++++|+..|+++... .|+... +..
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~----~----~~----~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t----~~~ 330 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP----E----KT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT----FSI 330 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC----C----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----HHH
Confidence 46888999999999997643 1 11 157999999999999999999999998753 454332 344
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhC-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLN-PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|+.
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH
Confidence 4455666799999999999998875 45667889999999999999999999998764 3567899999999999999
Q ss_pred HHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc--ccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVR-PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD--ADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
++|++.|+++.+.. ..+..++..+...+...|..++|..+|+.+.+..+ .+...|..+...+.+.|++++|.+.+++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999988752 22456778888889999999999999999976422 2456788899999999999999999876
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
+ ...| ...+|..+...+...|+++.|...+++.+++.|++...+..+..+|...|++++|.+.++...+
T Consensus 488 ~-~~~p----------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 488 A-PFKP----------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred C-CCCC----------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4 2333 3678999999999999999999999999999999888999999999999999999999998765
Q ss_pred cC
Q psy9209 318 LD 319 (349)
Q Consensus 318 ~~ 319 (349)
..
T Consensus 557 ~g 558 (697)
T PLN03081 557 KG 558 (697)
T ss_pred cC
Confidence 43
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=146.87 Aligned_cols=264 Identities=14% Similarity=0.077 Sum_probs=218.8
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+..+.++.+|..|+..+..+++..+... ..|...+..++..|+|++|....++.+++.|..+... ...
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a---------~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~---~r~ 123 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNA---------SYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ---LRE 123 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccch---------hhhchhHHHHHHHHhHhhcccchhhheecCCCccccc---cch
Confidence 4567788899999999999996554442 4688999999999999999999999999988876643 222
Q ss_pred HHhcCCCcchHHHHHHHH---------------HHHhhC---cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH
Q psy9209 83 AQKRQPDESSSQAVLYFQ---------------RALKLN---PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY 144 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~---------------~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 144 (349)
+.++...++..+|...++ +.+..+ |....+....+.++...|++++|...--..+++++.+.
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~ 203 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA 203 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh
Confidence 333333344444443333 111111 22234456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------------HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD- 211 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~- 211 (349)
.+++..|.+++..++.+.|+..|++++.++|+.. ..+..-|+-.++.|++.+|.++|..+|.++|++
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 9999999999999999999999999999999865 346677888999999999999999999999985
Q ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 212 ---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 212 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
...|.+++.+..++|+..+|+...+.++.+++. ...++...|.++...++|++|.+.|+++++...+
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---------yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---------YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 557889999999999999999999999999998 8999999999999999999999999999987655
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-18 Score=142.70 Aligned_cols=307 Identities=14% Similarity=0.173 Sum_probs=246.6
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
...++|...+...+.++.+.+... .++-..|..+...|+-++|......++..++.+...|.+++.+ +
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHg---------eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~---~ 85 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHG---------ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL---Q 85 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccc---------hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH---H
Confidence 467889999999999986444333 4678899999999999999999999999999999998888866 4
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 166 (349)
....+|++|+++|+.|+.++|++...+.-++.+..++++++.....-.+.++..|.....|...+..+...|++..|...
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhcC---CCCh---------------------------------------HHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 167 YKQAHMVR---PNDP---------------------------------------RMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 167 ~~~~~~~~---~~~~---------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
.+...+.. |+.. ......|.++.+++++++|...|...
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 77766543 2211 11234577788999999999999999
Q ss_pred HccccccHHHHHHHHHHHHhcCcHHHHH-HHHHHHHhcccccC-------------------------------------
Q psy9209 205 RAIGDADGKALFKLAKLYDKLNETEAAA-DLFMEFVSKLDTFA------------------------------------- 246 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~------------------------------------- 246 (349)
+..+|++...+..+-.++..-.+.-++. ..|...-+..|...
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 9999998777766655553221222222 33333222222110
Q ss_pred -------------------------------------CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChH
Q psy9209 247 -------------------------------------APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE 289 (349)
Q Consensus 247 -------------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 289 (349)
.........+.++.++..+...|+++.|..+++.++...|+..
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 0012223456677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCc
Q psy9209 290 EAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPST 325 (349)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 325 (349)
+.+..-++++...|+.++|..+++.+.++|-.|..+
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 999999999999999999999999999998776544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-18 Score=142.32 Aligned_cols=308 Identities=14% Similarity=-0.030 Sum_probs=221.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|.++...|+.+.+...+.++....+... + . .......+..+...|++++|...+++++..+|++..++.....
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~---~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARA-T--E---RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCC-C--H---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 46677788999999888888875544332 1 1 2456678999999999999999999999999998876542001
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
........+....+.+.+.......|........+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 11111223556666666655445667777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc--cHHHHH---HHHHHHHhcCcHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA--DGKALF---KLAKLYDKLNETEAAA 232 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~---~l~~~~~~~~~~~~A~ 232 (349)
+|+.++++++...|.++ ..+..+|.++...|++++|+..+++++...|. ...... .+...+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999999999887543 34568999999999999999999999876652 111111 2222233344333332
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC---------hHHHHHHHHHHHHHcC
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---------AEEAKSLLRSIAQKRQ 303 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~ 303 (349)
.+ +.+....+.. ... +.........+.++...|+.++|...++........ ........+.++...|
T Consensus 246 ~w-~~~~~~~~~~--~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 246 RW-EDLADYAAWH--FPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred HH-HHHHHHHHhh--cCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 22 2222211110 000 112333346888899999999999999887653322 3455677888999999
Q ss_pred CCCCchhHHHHhhhcC
Q psy9209 304 PDESSSQPMECAVVLD 319 (349)
Q Consensus 304 ~~~~A~~~~~~a~~~~ 319 (349)
++++|+..+..++.+.
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-18 Score=153.54 Aligned_cols=300 Identities=12% Similarity=0.038 Sum_probs=237.0
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcch-------------------------------hHHHHHHHHHHHHhc
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC-------------------------------GFFAFKYLANHHLKA 52 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~ 52 (349)
..|.+.|++++|+.+|+++.+.- ..|+... -..++..+...|.+.
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g----~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDG----SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC----CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 45778899999999999987421 1111100 012456778889999
Q ss_pred CCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhC-cccHHHHHHHHHHHHhcCChHHHHH
Q psy9209 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLN-PNYLGVWTLLGHEYMEMKNTNAAIQ 131 (349)
Q Consensus 53 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 131 (349)
|++++|...|+++... +...|. .+...|.+.|++++|+..|++..... ..+..++..+...+.+.|++++|.+
T Consensus 273 g~~~~A~~vf~~m~~~---~~vt~n---~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 273 GDIEDARCVFDGMPEK---TTVAWN---SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred CCHHHHHHHHHhCCCC---ChhHHH---HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999887542 334433 34455666799999999999987643 2246688889999999999999999
Q ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--c
Q psy9209 132 CYRQAIEIN-NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--G 208 (349)
Q Consensus 132 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~ 208 (349)
.+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|+.++|++.|+++.+. .
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999998875 55677888999999999999999999998754 35678999999999999999999999998865 4
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
| +...+..+...+...|..++|.++|+.+.+..+- ......|..+...+.+.|++++|.+.+++. ...|+
T Consensus 424 P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-------~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~- 493 (697)
T PLN03081 424 P-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-------KPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT- 493 (697)
T ss_pred C-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-------CCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-
Confidence 5 5667888888999999999999999998764221 013677889999999999999999999875 33444
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 289 EEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
...|..+...+...|+.+.|...+++.+++.|++...+
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 45688888888899999999999999999999876543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=135.75 Aligned_cols=189 Identities=13% Similarity=-0.024 Sum_probs=117.5
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH---
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY---RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR--- 179 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 179 (349)
++..+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 344566777777777777777777777777777777654 46677777777777777777777777777776665
Q ss_pred HHHHHHHHHHHh--------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 180 MLTALGEAFEKQ--------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 180 ~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
+++.+|.++... |++++|+..+++++..+|++...+..+..+.... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-----------------~~------- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-----------------NR------- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-----------------HH-------
Confidence 567777777665 6777777777777777777654432221111000 00
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC---hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
.......+|.++...|++.+|+..+++++...|+ .+.++..++.++...|++++|..+++......|
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1122234555566666666666666666655443 345556666666666666666665555444433
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-19 Score=153.42 Aligned_cols=299 Identities=16% Similarity=0.105 Sum_probs=184.3
Q ss_pred CcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH-------
Q psy9209 10 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI------- 82 (349)
Q Consensus 10 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~------- 82 (349)
.+...|...|-+++.. ++.. +.+|..+|.+|...-+...|..+|.++.++++.+.+++......
T Consensus 472 K~~~~al~ali~alrl-d~~~--------apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL-DVSL--------APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred hhHHHHHHHHHHHHhc-ccch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 3467788888888732 2222 14789999999998899999999999999998887764333322
Q ss_pred --------------------------HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy9209 83 --------------------------AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQA 136 (349)
Q Consensus 83 --------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 136 (349)
+..|...++...|+..|+.++..+|++...|..+|.+|...|++..|++.|.++
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 223334455555555555555555555555555555555555555555555555
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhhCHHHHHHHHHHHHcc--
Q psy9209 137 IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-------RMLTALGEAFEKQEKISEAMKCYNKSRAI-- 207 (349)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 207 (349)
..++|.+.-+.+..+.+....|+|.+|+..+...+....... +.+...+..+...|=..+|..+++++++.
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 555555555555555555555555555555555554322221 22222222222223333333333333221
Q ss_pred -----c----------------------cc-----------------------------------------cHHHHHHHH
Q psy9209 208 -----G----------------------DA-----------------------------------------DGKALFKLA 219 (349)
Q Consensus 208 -----~----------------------~~-----------------------------------------~~~~~~~l~ 219 (349)
. |+ .+..|+++|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 0 00 033455666
Q ss_pred HHHHh--------cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 220 KLYDK--------LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 220 ~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..|.. +.+...|+.++.+++++..+ +...|..||.+ ...|++.-|..+|-+.+...|.....
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~an---------n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~ 852 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCAN---------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQ 852 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc---------cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhh
Confidence 65554 22334677888888887777 67777778777 55578888888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 292 KSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 292 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
|.++|.+.....+++-|...|.++..++|.+...|.
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCchhhHHHH
Confidence 888888888888888888888888888887765543
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=140.02 Aligned_cols=305 Identities=16% Similarity=0.158 Sum_probs=226.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc---hHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---AEEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~ 78 (349)
.+.-+++.|++...+..|+.+++. .+.+-.....+|..+|++|+..++|++|+++-..-+.+... ...-...
T Consensus 23 EGERLck~gdcraGv~ff~aA~qv-----GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQV-----GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHh-----cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 355678899999999999999942 22222333357899999999999999999986654432111 0001112
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHhcCC--------------------hHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTLLGHEYMEMKN--------------------TNAAIQC 132 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~--------------------~~~A~~~ 132 (349)
-++++..+.-.|.+++|+.++.+-+.+... ...+++++|.+|...|+ ++.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 345555666679999999999988766433 35688999999988775 3456666
Q ss_pred HHHHHHhCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 133 YRQAIEINNL------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN------DPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 133 ~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
|..-+++... ...++-+||..|+.+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+++.|+++
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 6665555332 2456788999999999999999988777666332 236788999999999999999999
Q ss_pred HHHHHccc------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH
Q psy9209 201 YNKSRAIG------DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274 (349)
Q Consensus 201 ~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (349)
|+..+.+. ...+...+.+|..|.-..++++|+.++++-+.+... ..+......+++.||..+...|..++|
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe---L~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE---LEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 99987652 224567789999999999999999999999888766 445556788999999999999999999
Q ss_pred HHHHHHHHccc-----CC-hHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 275 YKCAQKCLQHE-----ET-AEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 275 ~~~~~~a~~~~-----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
+.+.++.+++. +. ...+..++.......|..+.-..-.+.
T Consensus 335 l~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~ 380 (639)
T KOG1130|consen 335 LYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTEL 380 (639)
T ss_pred HHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHH
Confidence 99988887653 22 345667777777778877654433333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-17 Score=152.64 Aligned_cols=188 Identities=11% Similarity=0.055 Sum_probs=159.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--RPNDPRMLTALGEAFEK 190 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 190 (349)
...+...|.+.|++++|...|+.. +.+..+|..+...|...|+.++|+..|+++.+. .|+ ...+..+-..+..
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~ 601 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSR 601 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhh
Confidence 345667888999999999999886 457889999999999999999999999998874 444 4456666677889
Q ss_pred hhCHHHHHHHHHHHHcc---ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 191 QEKISEAMKCYNKSRAI---GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
.|.+++|..+|+.+.+. .| +...+..+..++.+.|++++|.+.++++ ...|+ ..+|..|-..+..
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd----------~~~~~aLl~ac~~ 669 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD----------PAVWGALLNACRI 669 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC----------HHHHHHHHHHHHH
Confidence 99999999999998843 34 5678899999999999999999999876 34453 7788888888888
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
.|+.+.+....++++++.|++...+..++.+|...|++++|.+..+...+
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=131.86 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=155.1
Q ss_pred CCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHH-
Q psy9209 33 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLG- 111 (349)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 111 (349)
|........++.+|..++..|++++|+..+++++...|+++.....+..++.++...|++++|+..++++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 3444455789999999999999999999999999999988765555666677788889999999999999999998775
Q ss_pred --HHHHHHHHHHhc--------CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 112 --VWTLLGHEYMEM--------KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 112 --~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
+++.+|.++... |++++|++.|++++..+|++..++..+..+....+ . .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHH
Confidence 688999999876 78999999999999999988665543332211111 0 01223
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
..+|.++...|++.+|+..+++++...|+ .+.+++.+|.++...|++++|..+++......|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57888899999999999999999988665 457899999999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=123.77 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 96 VLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
...++++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35677888888774 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
+++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888777776544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-17 Score=149.75 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=191.7
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHHHHHHH-
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EETAEEAKSLLR- 80 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~l~- 80 (349)
..|.+.|++++|..+|+++. .++. .+|..+...|.+.|++++|+..|+++... .|+.......+.
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~--------~~d~----~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRME--------TKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCC--------CCCe----eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 56778888888888887643 1111 35888888888888888888888877543 354332221111
Q ss_pred ------------------------------HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 81 ------------------------------SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 81 ------------------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
.+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHH
Confidence 122233444555555555544322 22334555555555556666666
Q ss_pred HHHHHHHHh-CcccHH----------------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 131 QCYRQAIEI-NNLDYR----------------------------------AWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 131 ~~~~~a~~~-~~~~~~----------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
..|+++... .|+... +...+...|.+.|+.++|...|+.. +
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~ 551 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E 551 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C
Confidence 666555432 222110 1112334555666666666666654 4
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
.+...|..+...|...|+.++|+..|+++.+. .| +...+..+...+.+.|.+++|..+|+.+.+..+- ..
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi-------~P 623 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI-------TP 623 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC-------CC
Confidence 45667888888888888888888888887764 44 4455666666788888888888888888743221 01
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
....|..+..++.+.|++++|.+.+++. ...|+ ...|..+-..+...|+.+.+....+++++++|++.....
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 4678889999999999999999999885 45565 455655555677789999999999999999999876543
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=144.48 Aligned_cols=266 Identities=13% Similarity=0.012 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..|..+|-.|...+++..|+..|+.+++.+|.+...|..++ .+|...|.+..|++.|.++..++|.+.-+.+..+.+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLG---eAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLG---EAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHH---HHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 45777999999999999999999999999999998876665 557778999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------------------
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLD-------YRAWYGLGQTYEILRLPYYGLYYYKQAHMV------------------- 173 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 173 (349)
....|.|.+|+..+...+...... .+++...+..+...|=..+|..+++++++.
T Consensus 640 ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a 719 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA 719 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999988754333 334444444444445455555555554443
Q ss_pred ----------CC-----------------------------------------CChHHHHHHHHHHHH--------hhCH
Q psy9209 174 ----------RP-----------------------------------------NDPRMLTALGEAFEK--------QEKI 194 (349)
Q Consensus 174 ----------~~-----------------------------------------~~~~~~~~l~~~~~~--------~~~~ 194 (349)
.| ..+..|+++|..|.. +.+.
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 01 113457788877765 2334
Q ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH
Q psy9209 195 SEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274 (349)
Q Consensus 195 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (349)
..|+.++.+++++..++...|..||.+ ...|++.-|...|-+.+...|. ....|.++|.++.+..+++-|
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~---------~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT---------CHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc---------chhheeccceeEEecccHHHh
Confidence 589999999999999999999999988 6669999999999999999998 799999999999999999999
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 275 YKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
...|.++..++|.+...|...+.+....|+.-++...|.-..++
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el 913 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDEL 913 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHh
Confidence 99999999999999999999999999999887777777664333
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-16 Score=132.50 Aligned_cols=249 Identities=14% Similarity=0.078 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..++..+.-.+..++|...+...+.+++..|++++.. +..|..+...|+-++|..+.+.++..++....+|..+|.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgesl---AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESL---AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhH---HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 4577777778899999999999999999999999984 4445556667999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
+....+|++|+++|+.|+.+.|++...|..++.+..++++++.....-.+.++..|.....|...+..+...|++..|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccc---ccc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 200 CYNKSRAIG---DAD-----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 200 ~~~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
.++...+.. |+. .........+....|.+++|.+.+..--...-+ ........+.++.+.+++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---------kla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---------KLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---------HHHHhhhHHHHHHHHhhH
Confidence 888777653 322 334455566777888888888777654333222 455566789999999999
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 272 DTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 272 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
++|...|...+..+|++...+..+-.++.
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 99999999999999999988888877775
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=134.47 Aligned_cols=272 Identities=12% Similarity=-0.011 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++..+|..+...|+.+.+...+.++.+..|.+..........+..+...|++++|...++++++.+|++..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 5789999999999999999999999888777554433333334445556799999999999999999999877765 555
Q ss_pred HHhcCCh----HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH
Q psy9209 120 YMEMKNT----NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195 (349)
Q Consensus 120 ~~~~~~~----~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (349)
+...|++ ..+...+.......|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 5555544 444444444334566677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccccH----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH--HHHHHHHHHHhC
Q psy9209 196 EAMKCYNKSRAIGDADG----KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA--FKYLANHHLKAN 269 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 269 (349)
+|+.++++++...|..+ ..+..+|.++...|++++|+..+++++...|.. ...... ...+...+...|
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES------DPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC------ChHHHHhhHHHHHHHHHhcC
Confidence 99999999999876433 346689999999999999999999997665520 001111 112223333344
Q ss_pred CHHHHHHH--H-HHHHcccCC--hHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 270 NLDTAYKC--A-QKCLQHEET--AEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 270 ~~~~A~~~--~-~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
....+..+ . .......|. ........+.+....|+.+.|...++.....
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33333332 1 111111111 2222235777888889999998888876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=119.85 Aligned_cols=127 Identities=11% Similarity=0.073 Sum_probs=119.0
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc
Q psy9209 130 IQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
...++++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 210 ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
+++.+++++|.++...|++++|+..|++++...|+ ++..+..+|.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~---------~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA---------DASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 788888888776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=130.84 Aligned_cols=272 Identities=15% Similarity=0.097 Sum_probs=200.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
++.++...|++++|+..+++....+.+.. ..+...|.++...|++++|...|...+..+|++...+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~---------~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKL---------AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 46788899999999999977664332222 578899999999999999999999999999999888766655
Q ss_pred HHHhcC--CCcchHHHHHHHHHHHhhCccc--------------------------------HHHHHHHHHHHHhcCChH
Q psy9209 82 IAQKRQ--PDESSSQAVLYFQRALKLNPNY--------------------------------LGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 82 ~~~~~~--~~~~~~~A~~~~~~~~~~~~~~--------------------------------~~~~~~la~~~~~~~~~~ 127 (349)
...... ...+.+.-...|++.....|.. |.....+-.+|.......
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 432221 1235667777787776665541 122223333333222222
Q ss_pred HHHHHHHHHHHh---------------Cccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 128 AAIQCYRQAIEI---------------NNLD--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 128 ~A~~~~~~a~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
-...++...... .|.. ..+++.+++.|...|++++|+.+++++++..|..++.+...|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 222222222211 0111 34668899999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC--cchHHHHHHHHHHHHHh
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK--TCGFFAFKYLANHHLKA 268 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 268 (349)
.|++.+|...++.+..+++.+-.+....+..+.+.|+.++|...+......+.+. ..+- ....+.....|.+|.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~--~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP--LSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc--ccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987765543210 1111 12244445679999999
Q ss_pred CCHHHHHHHHHHHHcc
Q psy9209 269 NNLDTAYKCAQKCLQH 284 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~ 284 (349)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999888765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-15 Score=112.69 Aligned_cols=206 Identities=13% Similarity=0.023 Sum_probs=170.4
Q ss_pred cCCHHHHHHHHHHHhhhhhc---hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHH
Q psy9209 52 ANNLDTAYKCAQKCLQHEET---AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNA 128 (349)
Q Consensus 52 ~~~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 128 (349)
..+.++-++....++...+. -++.|..+-.+..+....|+.+-|..++++.....|....+....|..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34556666666666543332 234566666666666667899999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
|+++|+..++-+|.+...+-..-.+...+|+.-+|++.+..-++..+.+.++|..++.+|...|+|++|.-|+++++-+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999999999988888888888889999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 209 DADGKALFKLAKLYDKLN---ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
|.++..+..+|.+++.+| +..-|.++|.++++++|. +..+++.+-.+..
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~---------~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK---------NLRALFGIYLCGS 236 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH---------hHHHHHHHHHHHH
Confidence 999999999999988776 456788999999999886 5666666554443
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-14 Score=116.43 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=181.8
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
..++++..|..+|++++. .+..+. ..|...+.+-++..+...|..++.+++.+-|.-...|+-+..+-..+
T Consensus 84 esq~e~~RARSv~ERALd------vd~r~i---tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD------VDYRNI---TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HhHHHHHHHHHHHHHHHh------cccccc---hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 456788888899998883 222221 36888888888888888888888888888887777666555554443
Q ss_pred CCCcchHHHHHHHHHHHhhCcc--------------------------------cHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPN--------------------------------YLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
|+..-|.+.|++-++..|+ ....|...+..-...|+..-|...|+
T Consensus 155 ---gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 155 ---GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred ---cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6777777777776666664 13345555666666777777777777
Q ss_pred HHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------------------------------------
Q psy9209 135 QAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMV-------------------------------------- 173 (349)
Q Consensus 135 ~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------------------------- 173 (349)
+|++.-.++ .......|..-..++.++.|..+|+-++..
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 776643222 112222233333333344443333333332
Q ss_pred ------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc------------------------------------
Q psy9209 174 ------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD------------------------------------ 211 (349)
Q Consensus 174 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------ 211 (349)
+|.+-++|+.+-.+-...|+.+.-.+.|++|+...|..
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45555566666655556666666666666666554431
Q ss_pred ------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 212 ------------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 212 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+.+|...|....++.+...|.+.+-.++...|. ...+.....+-.+.++++.....|+
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK----------~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK----------DKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc----------hhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444455555555555555555555555554 4555555566667777888888888
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
+.++..|.+-.+|...|.+...+|+.+.|...|+-|+..
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 888888888888888888888888887777777776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=119.74 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=126.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC
Q psy9209 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK 124 (349)
Q Consensus 45 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 124 (349)
-+-.|+..|+++......++.. +|.. .+...++.++++..++++++.+|+++..|..+|.++...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~------------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH------------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc------------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Confidence 3456778888877644432211 1110 1112477889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHH
Q psy9209 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQTY-EILRL--PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCY 201 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (349)
++++|+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|++++|+.++
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999875 67677 589999999999999999999999999999999999999999
Q ss_pred HHHHccccccHH
Q psy9209 202 NKSRAIGDADGK 213 (349)
Q Consensus 202 ~~a~~~~~~~~~ 213 (349)
+++++..|.+..
T Consensus 168 ~~aL~l~~~~~~ 179 (198)
T PRK10370 168 QKVLDLNSPRVN 179 (198)
T ss_pred HHHHhhCCCCcc
Confidence 999998776543
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=132.71 Aligned_cols=274 Identities=14% Similarity=0.079 Sum_probs=215.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHH-HHHHHHHHhcCCCcchHHHHHHHHHHHhhC------cccHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK-SLLRSIAQKRQPDESSSQAVLYFQRALKLN------PNYLGVWT 114 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~ 114 (349)
+..-|.-+++.|++...+.+|+.+++...++.... .++..++.+|...++|++|+++..--+.+. -..+.+.-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 34457888999999999999999999876665443 345677788888899999999865433321 12234557
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhCC--------------------HHHHHHHHH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNL------DYRAWYGLGQTYEILRL--------------------PYYGLYYYK 168 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 168 (349)
++|.++..+|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 8999999999999999999888775332 36789999999987765 244566666
Q ss_pred HHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy9209 169 QAHMVRPN------DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFM 236 (349)
Q Consensus 169 ~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~ 236 (349)
.-+++... ...++-++|..|+-+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 65554322 2357788999999999999999998887776432 34588899999999999999999999
Q ss_pred HHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC------ChHHHHHHHHHHHHHcCCCCCchh
Q psy9209 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE------TAEEAKSLLRSIAQKRQPDESSSQ 310 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~ 310 (349)
..+.+... ..+....+...+.||..|.-..++++|+.++++-+.+.. ....+...||..+-..|..++|+.
T Consensus 260 ~tl~LAie---lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 260 LTLNLAIE---LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHH---hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 99887766 455666788999999999999999999999999877643 345677889999999999999999
Q ss_pred HHHHhhhc
Q psy9209 311 PMECAVVL 318 (349)
Q Consensus 311 ~~~~a~~~ 318 (349)
+.++.+++
T Consensus 337 fae~hl~~ 344 (639)
T KOG1130|consen 337 FAELHLRS 344 (639)
T ss_pred HHHHHHHH
Confidence 88887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=118.86 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=130.6
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
...|...|+++......++.. +|.. -+...++.++++..++++++.+|++...|..+|.+|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 345666788877655443221 1211 12236778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHH-HHhhC--HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAF-EKQEK--ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
|+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|..+...|++++|+..+++++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999975 67787 5999999999999999999999999999999999999999999999
Q ss_pred hcccc
Q psy9209 240 SKLDT 244 (349)
Q Consensus 240 ~~~~~ 244 (349)
+..|.
T Consensus 172 ~l~~~ 176 (198)
T PRK10370 172 DLNSP 176 (198)
T ss_pred hhCCC
Confidence 99886
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-15 Score=110.58 Aligned_cols=185 Identities=18% Similarity=0.066 Sum_probs=167.8
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
..++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34444556666777788999999999999999998899999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
--+...+|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++++-+.|. .+..+..+|.+
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~---------n~l~f~rlae~ 197 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF---------NPLYFQRLAEV 197 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC---------cHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred HHHhC---CHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 265 HLKAN---NLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 265 ~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
++-+| +.+-|.++|.++++++|.+..+++.+-.+
T Consensus 198 ~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 198 LYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 99887 78889999999999999777776655433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=114.54 Aligned_cols=177 Identities=14% Similarity=0.073 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+..+...+|......|++..|+..+.++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555555556667777777 777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 174 RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
.|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a--------- 200 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA--------- 200 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC---------
Confidence 77777777777777777777777777777777777777777777777777777777777777777766555
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
...+..+|+.+...+|++++|.....+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 567777777777777777777766544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=114.98 Aligned_cols=178 Identities=14% Similarity=0.084 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
..+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34666777777889999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 207 IGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
..|+++.+|..+|.+|.+.|++++|...|.+++++.|. .+.+..++|..+.-.|+++.|..++..+....+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999 899999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 287 TAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
.+..+..+++.+...+|++++|...-.+
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8999999999999999999988776544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-13 Score=109.93 Aligned_cols=261 Identities=16% Similarity=0.065 Sum_probs=199.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc-cHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN-YLGVWTLLGHEY 120 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 120 (349)
...-|..-+..|+|.+|.....+.-+..+.....+.. .+.+-...|+.+.+-.++.++-+..++ ...+...++.+.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~---aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLL---AAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHH---HHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3445556667899999998888876665554443322 233444569999999999999888444 345678888999
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------------------------
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR-------------------------- 174 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------- 174 (349)
...|+++.|.....++++..|.++.+......+|...|++.+...++.+.-+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988877766665431
Q ss_pred ----------------CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 175 ----------------PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 175 ----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
..++.+...++.-+..+|+.++|.+..+.+++..-+. .....++ ...-++...=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHH
Confidence 1234455566777778888888888888888775432 2222222 34567777777788888
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
++..|+ .+..+..||.++.+.+.|.+|..+|+.+++..|+. ..+..++.++..+|+..+|.+.++.++.+
T Consensus 321 l~~h~~---------~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPE---------DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCC---------ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 887777 78999999999999999999999999999988764 55788999999999999999999998843
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=134.27 Aligned_cols=253 Identities=13% Similarity=0.090 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++..++..+...+++++|+..++..++..|+....+..++.+ +.+.+++.++... . ++..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l---~~q~~~~~~~~lv--~--------------~l~~ 92 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGIL---SLSRRPLNDSNLL--N--------------LIDS 92 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHH---HHhhcchhhhhhh--h--------------hhhh
Confidence 4677788887788888888888888888888777776666553 3334444433332 2 2333
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
.....++ .+++++...+...+.+..+++.+|.||.++|+.++|...|+++++.+|+++.++.++|..|... +.++|+.
T Consensus 93 ~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 93 FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 3333344 4444444444445666678888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC-----------CCCCcchHHHHHHHHHHHHHh
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA-----------PPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~ 268 (349)
++.+++.. +...+++.++.+++.+.+...|.... ..........+.-+-..|...
T Consensus 171 m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 171 YLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 88888765 44455666666666666666655210 001112344555566888899
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcC--------------------CCCCchhHHHHhhhcCCCCCCccc
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ--------------------PDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
++|++++..++.+++.+|++..++..++.||...= ++..++..|++.+..+|.+.-.+.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 99999999999999999999999999999987321 113455566666666666554444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-15 Score=131.99 Aligned_cols=154 Identities=8% Similarity=0.009 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
...+++.-........|++++++.++|.+....|++++|...++.++++.|++..++..++.++.+.+++++|+..++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444555555556678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+...|+++..++.+|.++.+.|++++|+.+|++++..+|+.+.++..+|.++...|+.++|...|+++++....
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-13 Score=108.95 Aligned_cols=254 Identities=12% Similarity=-0.014 Sum_probs=203.7
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
...|+|.+|.....+.-+ ..+.+ ..++..-+.+.-++|+++.+-.++.++-+..+++.... ....+...
T Consensus 95 l~eG~~~qAEkl~~rnae------~~e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v--~ltrarll 163 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAE------HGEQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV--ELTRARLL 163 (400)
T ss_pred HhcCcHHHHHHHHHHhhh------cCcch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH--HHHHHHHH
Confidence 456899999888766541 11111 14677778888999999999999999998855544332 22334455
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--------------------------
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-------------------------- 140 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------------------- 140 (349)
...|+++.|.....++++..|.++.+......+|...|++.+...++.+.-+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 567999999999999999999999999999999999999998888877664421
Q ss_pred ----------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 141 ----------------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 141 ----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
..++.....++.-+...|+.++|.+..+.+++..-+.. ....++ ...-+++..=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 01355566677788899999999999999998765433 222222 23567888889999999
Q ss_pred HccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 205 RAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|....+.++..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS----------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886 888999999999999999999999998743
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-13 Score=130.68 Aligned_cols=316 Identities=10% Similarity=-0.022 Sum_probs=227.2
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHH--HHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE--AKSLLR 80 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~l~ 80 (349)
+.++...|++++|...+..+....+......+..........+|.++...|++++|...+++++...+.... ......
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 556678899999999998887544322111111222345566888999999999999999999875443221 112334
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--------cHHH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNY------LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--------DYRA 146 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~ 146 (349)
.++..+...|++++|...+++++...... ..++..+|.++...|++++|...+++++..... ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 45566666799999999999998764321 235578899999999999999999999886221 2234
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHH--
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPN-----DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALF-- 216 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~-- 216 (349)
+..+|.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.+.. .....
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 567889999999999999999999876322 23456678999999999999999999997653221 11111
Q ss_pred --HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc------CCh
Q psy9209 217 --KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE------ETA 288 (349)
Q Consensus 217 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------~~~ 288 (349)
.....+...|+.+.|...+.......+. ........+..++.++...|++++|...+++++... ...
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFA-----NNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCc-----cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1224455678999999887775542221 011122335678999999999999999999998753 123
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 289 EEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
..++..++.++...|+.++|...+.+++++.....
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 45778899999999999999999999998875544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-15 Score=129.73 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=136.8
Q ss_pred HHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHH
Q psy9209 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKAL 215 (349)
Q Consensus 136 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 215 (349)
.....|.++.++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|...+++++..+|+++..+
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~ 157 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI 157 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 216 FKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 216 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
+.+|.++.+.|++++|+..|++++...|+ ...++..+|.++...|+.++|...|+++++...+-
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPE---------FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999998777 79999999999999999999999999999876543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=107.97 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=94.4
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
..+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677777888877778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 8888888888888888888888888888888776655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-13 Score=115.71 Aligned_cols=269 Identities=11% Similarity=0.009 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++.....++...|++++|++++++....-++.... +-..+..+...|++++|...|...++.+|++...+..+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~---~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAV---LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 456778888999999999999999877766665555 44445567777999999999999999999999988888887
Q ss_pred HHhcC-----ChHHHHHHHHHHHHhCccc--------------------------------HHHHHHHHHHHHHhCCHHH
Q psy9209 120 YMEMK-----NTNAAIQCYRQAIEINNLD--------------------------------YRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 120 ~~~~~-----~~~~A~~~~~~a~~~~~~~--------------------------------~~~~~~l~~~~~~~~~~~~ 162 (349)
..... +.+.-..+|++.....|.. |.....+-.+|....+..-
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 73332 4566677787776665532 1222222222222222222
Q ss_pred HHHHHHHHHhc---C----------CCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 163 GLYYYKQAHMV---R----------PNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 163 A~~~~~~~~~~---~----------~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
...++...... . ...+ .+++.++..|...|++++|+.+.+++|+..|..++.+...|.++...
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 22222222111 0 1112 34578899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc--CC-------hHHHHHHHH
Q psy9209 226 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE--ET-------AEEAKSLLR 296 (349)
Q Consensus 226 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~-------~~~~~~~l~ 296 (349)
|++.+|...++.+-.+++. +-.+-...+..+.+.|+.++|...+......+ |. ........|
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~---------DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA---------DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred CCHHHHHHHHHHHHhCChh---------hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999988 67777888999999999999999998876654 21 122234468
Q ss_pred HHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 297 SIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 297 ~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
.++.+.|++..|+..|..+.+..-
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988876543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=128.91 Aligned_cols=197 Identities=12% Similarity=0.061 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+|+.+|.++.+.+++.++... .++..- ....++ .+++++-..+...+.+..+++.+|.|
T Consensus 66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-----------------~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~ 125 (906)
T PRK14720 66 SALYISGILSLSRRPLNDSNLL--NLIDSF-----------------SQNLKW-AIVEHICDKILLYGENKLALRTLAEA 125 (906)
T ss_pred ehHHHHHHHHHhhcchhhhhhh--hhhhhc-----------------ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4688888888888886665544 333322 222344 55555555566677777788999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|-++|+.++|...|+++++.+|+++.+..++|..|... +.++|+.++.+++.. +...+++.++..
T Consensus 126 Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e 190 (906)
T PRK14720 126 YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEE 190 (906)
T ss_pred HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHH
Confidence 99999999999999999999999999999999998888 899999999888765 566678888888
Q ss_pred HHHHHHccccccHHHHH--------------------HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 200 CYNKSRAIGDADGKALF--------------------KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~--------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
++.+.+..+|.+.+.+. -+-..|...++|++++.+++.+++..|. +..+..
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~---------n~~a~~ 261 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK---------NNKARE 261 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc---------chhhHH
Confidence 88888888877644422 2226677788899999999999999888 788888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 260 YLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
.++.+|.. .|.. ...++..++
T Consensus 262 ~l~~~y~~--kY~~-~~~~ee~l~ 282 (906)
T PRK14720 262 ELIRFYKE--KYKD-HSLLEDYLK 282 (906)
T ss_pred HHHHHHHH--HccC-cchHHHHHH
Confidence 88888873 3322 444444443
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=124.07 Aligned_cols=220 Identities=14% Similarity=0.047 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
...-..++..+...|-..+|+..|++.-.-+| ...+|...|+..+|..+..+-++ .|+++..|..+|.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlemw~~-----------vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEMWDP-----------VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHHHHH-----------HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 35677899999999999999999998643332 22334445888999999999888 6667888888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
+.....-|++|.++.+.. +..+...+|......++++++.++++..++++|-....|+.+|.+..+.+++..|.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 877766666666655443 45577778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
..|..++...|++..+|.+++..|...|+-.+|...++++++-+-. +..+|.+...+..+.|.+++|+..+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------HWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---------CCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765 7888999999999999999999999
Q ss_pred HHHHccc
Q psy9209 279 QKCLQHE 285 (349)
Q Consensus 279 ~~a~~~~ 285 (349)
.+.+.+.
T Consensus 611 ~rll~~~ 617 (777)
T KOG1128|consen 611 HRLLDLR 617 (777)
T ss_pred HHHHHhh
Confidence 9987654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=106.82 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 132 CYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
.+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|..++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+..++.+|.++...|++++|+..++++++..|+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 555555555555555555555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-14 Score=120.55 Aligned_cols=215 Identities=15% Similarity=0.164 Sum_probs=185.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|.++...|-...|+.+|++.- .|-....+|...|+..+|..+..+-++ .|.++..+..++.
T Consensus 404 laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 5788899999999999997754 578889999999999999999999888 4445555444443
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPN-YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
+ . .=..+|+++.++... +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.+++
T Consensus 466 v---~-------~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 V---L-------HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred h---c-------cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 3 3 233455555554322 3457778888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
+.|...|..++.+.|++..+|.+++..|...|+-.+|...++++++-+-.+..+|-+.-.+....|.+++|++.+.+.+.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999988
Q ss_pred cccc
Q psy9209 241 KLDT 244 (349)
Q Consensus 241 ~~~~ 244 (349)
+...
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 7554
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-13 Score=113.46 Aligned_cols=287 Identities=13% Similarity=0.044 Sum_probs=190.3
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 84 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 84 (349)
.+...|+|++|.....+++... |+.. .++...-.+..+.+.|++|+...+.-......+. ....-+.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~------pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~----~~fEKAY 87 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV------PDDE---DAIRCKVVALIQLDKYEDALKLIKKNGALLVINS----FFFEKAY 87 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC------CCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch----hhHHHHH
Confidence 3456789999999999988433 2221 4677777888999999999855544332221111 1134445
Q ss_pred hcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-----------------------
Q psy9209 85 KRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN----------------------- 141 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----------------------- 141 (349)
+.++.+..++|+..++ ..++.+.......|.+++++|+|++|...|+..++.+.
T Consensus 88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 5667799999999988 45566667888899999999999999999998865422
Q ss_pred --------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCC-------ChHHHHHHHHHHHHhhCHHHHH
Q psy9209 142 --------LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------RPN-------DPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 142 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~-------~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
+..+.+++.+.++...|+|.+|++.+++++.+ +.+ -..+...++.++..+|+..+|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 13456778888888899999999998888443 111 1145677888888899999999
Q ss_pred HHHHHHHccccccHH-------------------------------------------------HHHHHHHHHHhcCcHH
Q psy9209 199 KCYNKSRAIGDADGK-------------------------------------------------ALFKLAKLYDKLNETE 229 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~-------------------------------------------------~~~~l~~~~~~~~~~~ 229 (349)
..|...+..+|.+.. ++.+.+.+.+..+..+
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 988888887654321 1112222222222222
Q ss_pred HHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh-HHHHHHHHHHHHHcCCCCCc
Q psy9209 230 AAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA-EEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 230 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A 308 (349)
.+.+...+.-...|. ...--........+...+..|..++....+..|.. ..+...++++...+|+++.|
T Consensus 325 q~r~~~a~lp~~~p~---------~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 325 QVRELSASLPGMSPE---------SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHHHHHhCCccCch---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 222222211111121 22222223333334447889999999998888876 77888899999999999999
Q ss_pred hhHHHHhh
Q psy9209 309 SQPMECAV 316 (349)
Q Consensus 309 ~~~~~~a~ 316 (349)
++.+...+
T Consensus 396 ~~il~~~~ 403 (652)
T KOG2376|consen 396 LEILSLFL 403 (652)
T ss_pred HHHHHHHh
Confidence 99998443
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-12 Score=105.74 Aligned_cols=307 Identities=12% Similarity=0.062 Sum_probs=215.5
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch--HHHHHHHHHHH
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIA 83 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~ 83 (349)
-.+.|+..-|..+|+.+++.+.... .....+...+..-..+..++.|..+|+-++..-|.+ .+.+..+...-
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~------~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDE------EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 3445555556666665554332211 111223333333334445555555566555555543 22222222222
Q ss_pred HhcCCCcchHHHHH-----HHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH---------HHHHH
Q psy9209 84 QKRQPDESSSQAVL-----YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY---------RAWYG 149 (349)
Q Consensus 84 ~~~~~~~~~~~A~~-----~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~ 149 (349)
..+....-.++++. -|++.+..+|-+.++|+..-.+-...|+.+.-.+.|++|+...|... -.|.+
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 22322222333332 35566777888899999988888899999999999999999766532 22333
Q ss_pred HHH-HHHHhCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 150 LGQ-TYEILRLPYYGLYYYKQAHMVRPND----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 150 l~~-~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
.+. .-....+.+.+.+.|+.++++-|.. +.+|...|.....+.+...|...+-.++-..|. ..+.-....+-.+
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElq 449 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHH
Confidence 332 1235688999999999999998875 467888899999999999999999999999995 4555666677889
Q ss_pred cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh--HHHHHHHHHHHHHc
Q psy9209 225 LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKR 302 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~ 302 (349)
+++++.....|++.+...|. +..+|...|.+-..+|+.+.|...|+-|+....-+ .-.|..........
T Consensus 450 L~efDRcRkLYEkfle~~Pe---------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFSPE---------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HhhHHHHHHHHHHHHhcChH---------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence 99999999999999999998 89999999999999999999999999999875432 23444555666788
Q ss_pred CCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 303 QPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 303 ~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
|.++.|...|++.++..+... +|..+
T Consensus 521 ~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 521 GEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred chHHHHHHHHHHHHHhcccch-HHHhH
Confidence 999999999999999887765 55444
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=111.40 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
+-+-.-|.-+...++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 225 LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
+|++++|++.|+++++++|. +...+.+|..+-.+.++..
T Consensus 162 ~gk~~~A~~aykKaLeldP~---------Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPD---------NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCC---------cHHHHHHHHHHHHHhcCCC
Confidence 66666666666666666666 4455555554444444433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=115.80 Aligned_cols=257 Identities=11% Similarity=-0.001 Sum_probs=148.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCCh
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT 126 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 126 (349)
+.++-.|+|..++..++ ....+|.... .....+++++...|+++..+..... ..+....+...++..+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~--e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKL--ERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHH--HHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHH--HHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccch
Confidence 34556777777776555 2222222111 1122223333334666555443322 1222334555555555444455
Q ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 127 NAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 127 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
+.++..++..+... +.++.+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555443322 123444555566677777777777766543 45566666777777777777777777777
Q ss_pred HccccccHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 205 RAIGDADGKALFKLAKLYDKLN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
.+.+++..-+...-+.+....| ++.+|...|++.....+. .+..+..++.++..+|++++|...+++++
T Consensus 158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---------t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---------TPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7776665544444455544444 477777777776665544 56777777777777777777777777777
Q ss_pred cccCChHHHHHHHHHHHHHcCCC-CCchhHHHHhhhcCCCCC
Q psy9209 283 QHEETAEEAKSLLRSIAQKRQPD-ESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~ 323 (349)
..+|+++++..++..+....|+. +.+.+++.+....+|+++
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777777777777777777777 345556666666677654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=113.36 Aligned_cols=260 Identities=13% Similarity=-0.002 Sum_probs=187.4
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
+-++-.|+|..++..++ .. ...+. ........+.++++..|+++..+.-....- .|. ..+ +..++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~------~~~~~--~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~-l~a---v~~la 73 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK------SFSPE--NKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPE-LQA---VRLLA 73 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH------TSTCH--HHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCC-CHH---HHHHH
T ss_pred HHHHHhhhHHHHHHHhh-cc------CCCch--hHHHHHHHHHHHHHHcCChhHHHHHhccCC--Chh-HHH---HHHHH
Confidence 44566899999997664 11 11121 112457788899999999887665443321 232 222 23333
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN--PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
..+...++-+.++..++..+... +.++......|.++...|++++|++.+.+. .+.+.......++...++++
T Consensus 74 ~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~d 148 (290)
T PF04733_consen 74 EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPD 148 (290)
T ss_dssp HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HH
T ss_pred HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHH
Confidence 44443355666776666554332 234556677788899999999999988764 45677778888999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhh--CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQE--KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
.|.+.++.+.+.+.+..-+....+++....| ++.+|.-.|++.....+.++.++..++.++..+|++++|...+++++
T Consensus 149 lA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 149 LAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999888776666666666666666 58999999999988888899999999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCH-HHHHHHHHHHHcccCChHHHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNL-DTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~ 292 (349)
..+|. ++.++.+++.+....|+. +.+.+++.+....+|+++...
T Consensus 229 ~~~~~---------~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 229 EKDPN---------DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp CC-CC---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HhccC---------CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99888 899999999999999988 667788888888888876544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-14 Score=99.63 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=97.1
Q ss_pred HHhhC-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 102 ALKLN-PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 102 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 67778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
+++.|.|++..|+.+.|...|+.++...
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998875
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-13 Score=106.05 Aligned_cols=296 Identities=16% Similarity=0.038 Sum_probs=193.3
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHH--
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR-- 80 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~-- 80 (349)
|.++...|+|++|+..|+-+.+. .+++. ..+..++-+++-.|.|.+|...-.++-+ ++....++.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~-----~~~~~----el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhl 130 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNK-----DDAPA----ELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHL 130 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhcc-----CCCCc----ccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHH
Confidence 56889999999999999877631 12222 4688999999999999999887766532 111111111
Q ss_pred -------------------------HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy9209 81 -------------------------SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135 (349)
Q Consensus 81 -------------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 135 (349)
.++...+..-.+++|+..|.+++..+|+....-..++.+|.++.-|+-+.+.+.-
T Consensus 131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 1222233345788999999999998888887788899999999999999999888
Q ss_pred HHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH----------------------------HHhcCC----CChHHHHH
Q psy9209 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ----------------------------AHMVRP----NDPRMLTA 183 (349)
Q Consensus 136 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------------------------~~~~~~----~~~~~~~~ 183 (349)
-+...|+.+.+....+...++.=+-..|..-... +++.-| .-|++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 8888888888777777666543221111111111 111112 13467788
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cccccCC----CC-------
Q psy9209 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS---KLDTFAA----PP------- 249 (349)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~----~~------- 249 (349)
+...|..+++..+|+...+ .++|..|.-+...|.+....|+-....+.++-+-. +-...+. +.
T Consensus 291 L~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 8888999999999988765 46788888888888888888876555544443322 2111100 00
Q ss_pred --------------------CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-CChHHHHHHHHHHHHHcCCCCCc
Q psy9209 250 --------------------DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 250 --------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 308 (349)
--..+....++++..+...|++.+|.+.|-+.-... .+......+++.|+...+.++.|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 000122334566777777777777777776654433 34445556777888877777777
Q ss_pred hhHHHH
Q psy9209 309 SQPMEC 314 (349)
Q Consensus 309 ~~~~~~ 314 (349)
...+-+
T Consensus 448 W~~~lk 453 (557)
T KOG3785|consen 448 WDMMLK 453 (557)
T ss_pred HHHHHh
Confidence 666543
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=110.61 Aligned_cols=119 Identities=21% Similarity=0.231 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
+-+-.-|.-.++.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..+|.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 44566788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHH
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETE 229 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (349)
+|++++|++.|+++++++|++...+.+|..+-..+++..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988888877766666554
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-12 Score=105.27 Aligned_cols=135 Identities=12% Similarity=0.017 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHcccccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 193 KISEAMKCYNKSRAIGDAD-GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
.+.+|+..+....+.+|.. ..+...++.+...+|+++.|++.+...+...... .......+.+-..+-..+...++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss--~~~~~~~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS--ILEAKHLPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh--hhhhccChhHHHHHHHHHHhccCC
Confidence 4566777777777777766 6678888999999999999999998433211100 000111344444555666666666
Q ss_pred HHHHHHHHHHHcc-------cCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 272 DTAYKCAQKCLQH-------EETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 272 ~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
+.|...+.+++.. .+.....+...+....+.|+.++|...+++.++.+|++.++...+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 6666666666543 223334455567777778999999999999999999887765544
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-13 Score=104.61 Aligned_cols=301 Identities=15% Similarity=0.173 Sum_probs=226.2
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc---hHHHHHHHHHH
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET---AEEAKSLLRSI 82 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~ 82 (349)
+....++++|+..+.+.+.+++.. ..++..+-.+..+...+|.+++++.+--..+....+ ....+..+.++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999655433 233456777788888999999888766555543222 22233445566
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPN-----YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLG 151 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~ 151 (349)
+..+....++.+++.+....+.+... -..+...+|..+..++.++++++.|++++++..++ ..++..+|
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 66665567888888888777765322 23567889999999999999999999999874432 35788999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC----C------hHHHHHHHHHHHHhhCHHHHHHHHHHHHccc------cccHHHH
Q psy9209 152 QTYEILRLPYYGLYYYKQAHMVRPN----D------PRMLTALGEAFEKQEKISEAMKCYNKSRAIG------DADGKAL 215 (349)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~----~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~ 215 (349)
..+....++++|+-+..++.++... + ..+++.++..+..+|....|.++.+++.++. +-.....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999999999999999887332 2 2467788999999999999999999998772 3345667
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHcccCC---
Q psy9209 216 FKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT-----AYKCAQKCLQHEET--- 287 (349)
Q Consensus 216 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~a~~~~~~--- 287 (349)
..+|.+|...|+.+.|..-|+++...... ..+......++...+.++....-..+ |+++-++++++...
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMGTMAS---LGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 78999999999999999999999887665 44555667788888888776654444 88888888876532
Q ss_pred ---hHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 288 ---AEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 288 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
.-..+..++.+|..+|.-++-...+.++
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 2355677899999998887766666655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-12 Score=120.90 Aligned_cols=279 Identities=13% Similarity=-0.014 Sum_probs=205.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch---HHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA---EEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~ 78 (349)
++.++...|++++|...+++++...+.. +......+...+|.++...|++++|...+++++...... ......
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLT----WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 3566778999999999999998533221 111122467789999999999999999999998753321 111224
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-----ccHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPN--------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN-----LDYR 145 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~ 145 (349)
+..++..+...|++++|...+++++..... ....+..+|.++...|++++|...+.+++.... ....
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 456667777789999999999999876321 123456788999999999999999999987532 1345
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHH----HHHHHHHHhhCHHHHHHHHHHHHccccccH----HH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLT----ALGEAFEKQEKISEAMKCYNKSRAIGDADG----KA 214 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~ 214 (349)
.+..++.++...|++++|...+.++..+.+... .... .....+...|+.+.|..++.......+... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 566789999999999999999999977533221 1111 122445567899999999877665432222 22
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
+..++.++...|++++|...+++++..... .........++..+|.++...|+.++|...+.++++....
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~---~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARS---LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 567899999999999999999999987544 2222335678889999999999999999999999987644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=95.97 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=102.6
Q ss_pred HHHhC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 136 AIEIN-NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 136 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|+++|.++..+|++.+|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 77888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
++++|.++...|+.+.|.+.|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999873
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-12 Score=98.77 Aligned_cols=166 Identities=13% Similarity=-0.018 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRA---WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 183 (349)
+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++ .+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3445555555555556666666665555555544322 35555555555666666666665555555543 34445
Q ss_pred HHHHHHHhh------------------CHHHHHHHHHHHHcccccc-----------------HHHHHHHHHHHHhcCcH
Q psy9209 184 LGEAFEKQE------------------KISEAMKCYNKSRAIGDAD-----------------GKALFKLAKLYDKLNET 228 (349)
Q Consensus 184 l~~~~~~~~------------------~~~~A~~~~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~ 228 (349)
+|.++...+ ...+|+..|++.++..|++ ..--+.+|..|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 554432222 1234555566666655543 12224678889999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 229 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
..|+.-++.+++..|+ ++...+++..++..|...|..++|.......
T Consensus 192 ~AA~~r~~~v~~~Yp~------t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 192 VAVVNRVEQMLRDYPD------TQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999998 6668999999999999999999998876554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-12 Score=102.31 Aligned_cols=153 Identities=18% Similarity=0.056 Sum_probs=118.0
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
|....+++..+..++..|++++|...+...+...|+++..+...+.++...++.++|.+.+++++...|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 55667777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 187 AFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 187 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
++.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|. ...+..+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~--------------------------~A~AE~~~ 436 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL--------------------------LARAEGYA 436 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH--------------------------HHHHHHHH
Confidence 8888888888888888888888888888888888888777754443 33455555
Q ss_pred HhCCHHHHHHHHHHHHccc
Q psy9209 267 KANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 267 ~~g~~~~A~~~~~~a~~~~ 285 (349)
..|++++|+..+..+.+..
T Consensus 437 ~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 437 LAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hCCCHHHHHHHHHHHHHhc
Confidence 6677777777777776554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-12 Score=96.31 Aligned_cols=160 Identities=18% Similarity=0.096 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 183 (349)
+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.++...|+++.|+..+++.++..|+++ .+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3455666666666666666666666666654443 45566666666666666666666666666666554 35555
Q ss_pred HHHHHHHhh-----------CHHHHHHHHHHHHccccccH-----------------HHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 184 LGEAFEKQE-----------KISEAMKCYNKSRAIGDADG-----------------KALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 184 l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
+|.++.... ...+|+..|+..+...|++. .--+.+|..|.+.|.+..|+..+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 555544332 23466666777766666542 22356788999999999999999
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
+.+++..|+ ++....++..++..|.+.|..+.|.
T Consensus 165 ~~v~~~yp~------t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIENYPD------TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHSTT------SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHCCC------CchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999998 5667889999999999999988554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=101.71 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=130.3
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
.|....+++..+..++..|++++|+..+...+...|+++..+...+.++...++..+|.+.+++++..+|..+....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..+.+.|++.+|+..++..+..+|+ ++..|..|+..|..+|+..+|.....+..........+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~---------dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPE---------DPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCC---------CchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999998 89999999999999999998887766655554433333
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=96.75 Aligned_cols=288 Identities=12% Similarity=-0.004 Sum_probs=183.3
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHh
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 85 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 85 (349)
+....||..|+..++-... . +.+.. ...-..+|.+++..|+|++|...|+-+...+.-+.+.+..++..
T Consensus 32 fls~rDytGAislLefk~~-~-----~~EEE--~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc--- 100 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN-L-----DREEE--DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACC--- 100 (557)
T ss_pred HHhcccchhHHHHHHHhhc-c-----chhhh--HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHH---
Confidence 3456778888887765541 1 11111 13455688888888888888888888876544444444334333
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
++-.|.+.+|.....++ |+.+-....+-.+-.+.|+-++- -.|.+.+. +..+-...++.+.+..-.|++|+.
T Consensus 101 ~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~-~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAId 172 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRI-LTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAID 172 (557)
T ss_pred HHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHH-HHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHH
Confidence 33348888887765553 44454444444444555553332 23333332 123445667777777777888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD-- 243 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 243 (349)
.|++.+.-+|+....-..++.||.++.-++-+.+.+.--+...|+++.+....+....+.=+-..|..-.........
T Consensus 173 vYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 173 VYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 888888888887777778888888888888888888888888887777766666555543222222222211111000
Q ss_pred ----------------cc-CCC----CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 244 ----------------TF-AAP----PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 244 ----------------~~-~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
+. +.. ..-...+++..+|+..|..+++..+|....+ .++|..|.-+...|.+....
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAAL 329 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHh
Confidence 00 000 0111257888999999999999999988765 46888888889999999999
Q ss_pred CCCCCchhHHHHh
Q psy9209 303 QPDESSSQPMECA 315 (349)
Q Consensus 303 ~~~~~A~~~~~~a 315 (349)
|+--...+.++.+
T Consensus 330 GQe~gSreHlKiA 342 (557)
T KOG3785|consen 330 GQETGSREHLKIA 342 (557)
T ss_pred hhhcCcHHHHHHH
Confidence 9887777766654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9e-13 Score=109.66 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKI 194 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (349)
..|...+..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 33445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 195 SEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 195 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
++|+..|++++.++|+++.+...++.+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555555555555544443
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-11 Score=96.90 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=213.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTL 115 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~ 115 (349)
....|.-++...++++|+..+.+.+..-.+....+..++.+..+...+|.+++++.+--..+....+ ..+++.+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888889999999999999999877777777778888888888889999888776554443221 2457789
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHH
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTAL 184 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l 184 (349)
++..+....++.+++.+-+-.+.+.... ..+...+|..+..++.++++++.|+++++...++. .++..+
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 9999999999999999888887763222 35667799999999999999999999998744332 578899
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccc----------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcch
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDA----------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
|..+....++++|..+..++.++... ...+++.++..+..+|..-.|.++.+++.++.-. ..+.+..
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---~Gdra~~ 245 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---HGDRALQ 245 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH---hCChHHH
Confidence 99999999999999999999887322 2446788999999999999999999999887665 4456667
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC------hHHHHHHHHHHHHHcCCC-----CCchhHHHHhhhcC
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEET------AEEAKSLLRSIAQKRQPD-----ESSSQPMECAVVLD 319 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~-----~~A~~~~~~a~~~~ 319 (349)
.....-+|++|...|+.+.|..-|+.+...... ...+....+.+.....-. =.|++.-++++++.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 888899999999999999999999999765321 234444455554433222 34777767766553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=108.70 Aligned_cols=112 Identities=12% Similarity=0.026 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (349)
...|..++..|++++|+.+|+++++.+|.++.++..+|.++..+|++++|+..+++++.++|. .+.+++.+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---------~~~a~~~l 76 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS---------LAKAYLRK 76 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------CHHHHHHH
Confidence 344555666666666666666666666666666666666666666666666666666666665 56666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
|.++..+|++++|+..|+++++++|++..+...++.|....
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666554443
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=95.22 Aligned_cols=275 Identities=13% Similarity=-0.010 Sum_probs=157.9
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
.+..+|..||+++..-.+..+... ..+..+|.||+...+|..|..+|++.-...|......... +..+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~r---------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~---AQSL 88 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSR---------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ---AQSL 88 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH---HHHH
Confidence 456678888888776664333222 4688899999999999999999999988888765543222 2333
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 166 (349)
++.+.+..|+.........+.-...+...-+-+.+..+++..+....++.-. .+......+.|.+.++.|+++.|++-
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHH
Confidence 4456777777766555432111223334444555566666665555444221 13455666667777777777777777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc----cccc-------------------------HHHHHH
Q psy9209 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI----GDAD-------------------------GKALFK 217 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~ 217 (349)
|+.+++...-.+-.-++++.++++.|+++.|+++..+.++. .|.. .+++..
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 77777766666666667777777777777777666655543 2210 223344
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
.+-++++.|+++.|.+.+.. +-|. ..+..++..+.+++..-. .+++.+...-++-.+.++|-.++...++-.
T Consensus 247 KaAIeyq~~n~eAA~eaLtD---mPPR----aE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLl 318 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTD---MPPR----AEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLL 318 (459)
T ss_pred hhhhhhhcccHHHHHHHhhc---CCCc----ccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHH
Confidence 45556666666666554322 2221 112223444555543322 244555555555555666655555555555
Q ss_pred HHHHcC
Q psy9209 298 IAQKRQ 303 (349)
Q Consensus 298 ~~~~~~ 303 (349)
++.+..
T Consensus 319 lyCKNe 324 (459)
T KOG4340|consen 319 LYCKNE 324 (459)
T ss_pred HHhhhH
Confidence 555443
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-12 Score=97.30 Aligned_cols=275 Identities=11% Similarity=0.024 Sum_probs=207.3
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHH
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNA 128 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 128 (349)
+.+..+|..|++++..-.+.+|.+... +..++.+|+...++..|-.+|++.-...|......+..+..+++.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAg---LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAG---LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 466778999999999988888877655 55556677778999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
|+.....+.....-...+...-+-+.+..+++..+....++.-. .++.....+.|.+.++.|+++.|++-|+.+++..
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 99988777653222234445556677778888888776665421 2567888999999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----ccccCCC-----------C-----CCcchHHHHHHHHHHHHHh
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSK----LDTFAAP-----------P-----DKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-----------~-----~~~~~~~~~~~l~~~~~~~ 268 (349)
.-.+-.-++++.++++.|++..|+++..+.++. .|..+.. . ......+++...+.++++.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 888999999999999999999999988777664 3432200 0 0112355677778899999
Q ss_pred CCHHHHHHHHHHHHcccC--ChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 269 NNLDTAYKCAQKCLQHEE--TAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
|+++.|.+.+...--... -++....+++..- ..+++-+..+-+.-.++++|-.++...++
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHH
Confidence 999999877654321111 2345555555433 35677778888888889998666666555
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-10 Score=94.50 Aligned_cols=299 Identities=13% Similarity=0.115 Sum_probs=207.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHH--HHHHHhcC-------------CHHHHHHHHHHHhh
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL--ANHHLKAN-------------NLDTAYKCAQKCLQ 67 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-------------~~~~A~~~~~~~l~ 67 (349)
|..|.+.|.+++|.++|++++....+.. +-...+.+|... ..+...++ +++-....|+..+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~tvr---DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMTVR---DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhheehh---hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 6789999999999999999997654432 222222222211 11111111 22333444555443
Q ss_pred ------------hhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hCcc-----cHHHHHHHHHHHHhcCChHHH
Q psy9209 68 ------------HEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK-LNPN-----YLGVWTLLGHEYMEMKNTNAA 129 (349)
Q Consensus 68 ------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-----~~~~~~~la~~~~~~~~~~~A 129 (349)
.+|++...|..... ...|+..+-+..|..++. .+|. ....|...|..|...|+.+.|
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~-----l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK-----LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh-----hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 35555555433222 224788888888888875 4554 346789999999999999999
Q ss_pred HHHHHHHHHhCc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------------ChHHHHHHHHH
Q psy9209 130 IQCYRQAIEINN----LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN------------------DPRMLTALGEA 187 (349)
Q Consensus 130 ~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~~~ 187 (349)
...|+++++..- +...+|...|..-.+..+++.|+++.+++...-.. +..+|..++..
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 999999988632 23678888898888999999999999988765211 22467778888
Q ss_pred HHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
....|-++.....|++.+.+.--.|.+-.+.|..+....-++++.+.|++.+.+.+- |...+.|...-..+.+
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-------p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-------PNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC-------ccHHHHHHHHHHHHHH
Confidence 888899999999999999988778888899999999889999999999999887753 2255555543333222
Q ss_pred ---hCCHHHHHHHHHHHHcccCCh--HHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 268 ---ANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 268 ---~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
....+.|..+|+++++..|.. ...+...+.+...-|-...|+..|+++-
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 237889999999999887632 3444555666666677777777777653
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.7e-10 Score=93.40 Aligned_cols=301 Identities=11% Similarity=0.061 Sum_probs=204.9
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHh
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQK 85 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~ 85 (349)
...|+..+-+..|.+++...++....... ...|...|..|...|+.+.|...|+++.+.. +.-.+........+..
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~---~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSP---GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM 434 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCCh---hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 45688999999999999877766543322 2579999999999999999999999999763 3333333334444455
Q ss_pred cCCCcchHHHHHHHHHHHhhCcc------------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPN------------------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
-.+..+++.|+++.+++...-.. ...+|...+......|-++.-...|++.+++.--.|...
T Consensus 435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 55668999999999998764211 234677788888899999999999999999888888899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC--CChHHHHHHHHH---HHHhhCHHHHHHHHHHHHcccccc--HHHHHHHHH
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMVRP--NDPRMLTALGEA---FEKQEKISEAMKCYNKSRAIGDAD--GKALFKLAK 220 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~---~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~ 220 (349)
.+.|..+....-++++.+.|++.+.+.+ .-.++|...-.. -....+.+.|..+|+++++..|.. ..++...+.
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999854 334555543322 233457899999999999987742 235566677
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHH-HHHHHHHhCCHHHHHHHHHHHHcccCChH--HHHHHHHH
Q psy9209 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKY-LANHHLKANNLDTAYKCAQKCLQHEETAE--EAKSLLRS 297 (349)
Q Consensus 221 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~l~~ 297 (349)
+-..-|-...|+..|+++-..-+.. .....|.- +..+..--| ...-...|+++++.-|+.. +.....+.
T Consensus 595 lEEe~GLar~amsiyerat~~v~~a-------~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATSAVKEA-------QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777788888888888876543220 01111111 111111111 2233455666666555432 23334455
Q ss_pred HHHHcCCCCCchhHHHHhhhc
Q psy9209 298 IAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 298 ~~~~~~~~~~A~~~~~~a~~~ 318 (349)
+....|..+.|...|.-.-++
T Consensus 667 lEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhc
Confidence 556666666666666554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-11 Score=93.12 Aligned_cols=178 Identities=13% Similarity=0.047 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc---HHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY---LGVWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 116 (349)
..++..|..++..|++++|+..|++++...|..+.+......++.++.+.+++++|+..+++.++..|++ +.+++.+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 4577788888888888888888888888888887776666777778888888888888888888887765 3566777
Q ss_pred HHHHHhcC---------------C---hHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 117 GHEYMEMK---------------N---TNAAIQCYRQAIEINNLDYR---AWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 117 a~~~~~~~---------------~---~~~A~~~~~~a~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
|.++...+ + ..+|+..|++.++..|+..- +...+..+...+
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l------------------ 174 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL------------------ 174 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH------------------
Confidence 77654433 1 24566777777777776532 111111111111
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
..--+.+|..|.+.|.|.-|+.-++.+++..|+ ..+++..++..|..+|..++|......
T Consensus 175 --a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 175 --AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred --HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 122235677777788888888888888877655 356777777888888888777766544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=98.71 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=123.3
Q ss_pred cchHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHh
Q psy9209 90 ESSSQAVLYFQRALKLNP------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN------LDYRAWYGLGQTYEIL 157 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~ 157 (349)
|++++|...|.++..... .-...+...+.++... ++++|+.+|++++++.- .-..++..+|.+|...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 455555555555443321 1123344445555444 77777777777776521 1245677788888887
Q ss_pred -CCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc-------cHHHHHHHHHHHH
Q psy9209 158 -RLPYYGLYYYKQAHMVRPND------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA-------DGKALFKLAKLYD 223 (349)
Q Consensus 158 -~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~ 223 (349)
|++++|+++|+++++..... ..++..+|.++...|+|++|+..|+++....-. -...++..+.++.
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 88888888888888763221 246678899999999999999999988765211 1235567788899
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH--hCCHHHHHHHHHHHHcccCChHHH
Q psy9209 224 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK--ANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..|++..|...+++....+|.. ...........|...+.. ...+++|+.-|.+..+++|-...+
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F----~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~ 273 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSF----ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKM 273 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTS----TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCC----CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence 9999999999999999888862 122345556666666554 346888888888777666544433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-11 Score=92.63 Aligned_cols=175 Identities=19% Similarity=0.117 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH---HHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL---GVWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l 116 (349)
..++..|..++..|++.+|+..|++++...|..+.+......++.++...|+++.|+..+++.++..|+++ .+++.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 56788888899999999999999999888888777666677777778888888888888888888887754 567777
Q ss_pred HHHHHhcC-----------ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 117 GHEYMEMK-----------NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 117 a~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
|.++.... ...+|+..|+..+...|++..+- +|...+..+-. .-..--+.+|
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ia 148 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHHHH
Confidence 77765442 23356666666666666542111 00000000000 0011224567
Q ss_pred HHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A 231 (349)
..|.+.|.+..|+..++.+++..|+. ..++..++.++..+|..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777777777777776654 34566777777777776644
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-11 Score=94.99 Aligned_cols=229 Identities=16% Similarity=0.103 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcccc--------CCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh---chHHHHHHHHHH
Q psy9209 14 AAADLFMEFVSKLDTF--------AAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSLLRSI 82 (349)
Q Consensus 14 ~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l~~~ 82 (349)
+|.+++.++-+.+.+. ...|+.......|...|..|...|++++|...|.++....- +...+...+...
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~A 81 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEA 81 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555444432 11234455567788899999999999999999999976532 222333445555
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCcc------cHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTLLGHEYMEM-KNTNAAIQCYRQAIEINNL------DYRAWYG 149 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~------~~~~~~~ 149 (349)
+.++.+ .++++|+.++++++.+.-. -..++..+|.+|... |++++|+++|++++++... ...++..
T Consensus 82 a~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 82 ANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 566544 4999999999999986322 245778999999999 9999999999999987322 2456788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-----HHHHHH
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDP-------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-----GKALFK 217 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~ 217 (349)
+|.++...|+|++|+..|++.....-+++ ..++..+.|++..|++..|...+++....+|.. ......
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 99999999999999999999987533221 355677889999999999999999999888753 334444
Q ss_pred HHHHHHh--cCcHHHHHHHHHHHHhccc
Q psy9209 218 LAKLYDK--LNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 218 l~~~~~~--~~~~~~A~~~~~~~~~~~~ 243 (349)
+..++.. ...+++|+..|.+...+++
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 5554443 3457777777776655544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=94.90 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC---CHHHHHHHHH
Q psy9209 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR---LPYYGLYYYK 168 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 168 (349)
.+..+.-++.-+..+|++++-|..+|.+|+..|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555555555555555555544332 2344555555
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
+++..+|.+..+...+|..+++.|+|.+|+..++..+...|
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555555555555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=86.17 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PRMLTAL 184 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 184 (349)
..++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677777777777777777777777776654 4566777777777777777777777777776664 4567777
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
|.++...|++++|+.++++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=86.15 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHH
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFF 256 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
.++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++...|+ .+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK------SPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC------CCcccH
Confidence 44555555555555555555555555554443 344555555555555555555555555555444 111244
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
++..+|.++...|++++|..+++++++..|++..
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=81.68 Aligned_cols=97 Identities=26% Similarity=0.406 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44555556666666666666666666555555555566666666666666666666666655555555556666666666
Q ss_pred CHHHHHHHHHHHHcccc
Q psy9209 193 KISEAMKCYNKSRAIGD 209 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~ 209 (349)
++++|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666655555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=89.97 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
..+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3344555555555555555555555555543332 2345555555555555555555555555555555555555555
Q ss_pred HHHHhhC--------------HHHHHHHHHHHHcccccc
Q psy9209 187 AFEKQEK--------------ISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 187 ~~~~~~~--------------~~~A~~~~~~a~~~~~~~ 211 (349)
++...|+ +++|+.++++++..+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 5555554 445555555555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.2e-11 Score=87.70 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+++.+|..+...|++++|+.+|++++...|+.......+..++.++...|++++|+..+++++...|.+...+..+|.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 56788888888888888888888888887766443333455566667777888888888888888888888888888888
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
+...|+...+...+.+++. .+++|++++++++..+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888877666655555432 2677788888888877776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-11 Score=91.70 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC---cHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN---ETEAAADLFM 236 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 236 (349)
.+.-+.-++.-+..+|++.+-|..+|.+|+.+|++..|...|.+++++.|++++++..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666777788899999999999999999999999999999999999999999999888876553 3467888999
Q ss_pred HHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+++..+|. +..+.+.||..++..|++.+|...++..+...|.+..
T Consensus 218 ~al~~D~~---------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPA---------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCc---------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999888 7899999999999999999999999999888765433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=78.16 Aligned_cols=67 Identities=25% Similarity=0.418 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR-LPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 175 (349)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666655
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.35 E-value=7e-11 Score=88.05 Aligned_cols=98 Identities=17% Similarity=0.076 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHhhCccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 92 SSQAVLYFQRALKLNPNY--LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILRLPYYGLYY 166 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 166 (349)
+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443333333 455677777777777777777777777776554 234677777777777777777777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHH
Q psy9209 167 YKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+++++.+.|.....+..+|.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 77777777777777777777776
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=80.85 Aligned_cols=98 Identities=27% Similarity=0.334 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhccc
Q psy9209 226 NETEAAADLFMEFVSKLD 243 (349)
Q Consensus 226 ~~~~~A~~~~~~~~~~~~ 243 (349)
|++++|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 999999999999988766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-10 Score=83.26 Aligned_cols=115 Identities=13% Similarity=-0.019 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhhCHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PRMLTALGEAFEKQEKISE 196 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 196 (349)
.++...+...+++.+...|+. ..+.+.+|.++...|++++|...|+.++...|+. +.+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444444443 2333444444444444444444444444443322 1234444445555555555
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 197 AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 197 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5544433 1222223344444555555555555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-11 Score=83.57 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=96.7
Q ss_pred HHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 102 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|..||.++...++|++|+..|..+..+.++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34455666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+..|.|+..+|+.+.|+.+|+.++..
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999883
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=86.96 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
..++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.+.|. ..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---------~~ 106 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---------LP 106 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------cH
Confidence 34455555555555555555555555554333 2235555555555555555555555555555554 34
Q ss_pred HHHHHHHHHHH-------HhCCHH-------HHHHHHHHHHcccCCh
Q psy9209 256 FAFKYLANHHL-------KANNLD-------TAYKCAQKCLQHEETA 288 (349)
Q Consensus 256 ~~~~~l~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~ 288 (349)
..+..+|.++. ..|+++ +|+.++++++..+|.+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 44444444444 455544 5566666667777643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=77.44 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccc
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN-ETEAAADLFMEFVSKLD 243 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 243 (349)
+..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555566666666666665555555555666666655555 45566666655555544
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-10 Score=83.72 Aligned_cols=154 Identities=22% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
..|-+.-|.--|.+++.+.|+.+.+++.+|..+...|+++.|.+.|...++++|...-+..+.|..++.-|++.-|.+-+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 33444444444444444455444444445544444455555555555555555444444444444444444454444444
Q ss_pred HHHHhcCCCChH--HHHHHHH----------------------------HHHHhhCHHHHHHHHHHHHccccc-------
Q psy9209 168 KQAHMVRPNDPR--MLTALGE----------------------------AFEKQEKISEAMKCYNKSRAIGDA------- 210 (349)
Q Consensus 168 ~~~~~~~~~~~~--~~~~l~~----------------------------~~~~~~~~~~A~~~~~~a~~~~~~------- 210 (349)
.+-.+.+|++|. .|..+-. +-..+|+..+ ...++++.....+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADATDNTSLAEH 235 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhccchHHHHHH
Confidence 444444444441 1111100 0011122211 1222222222221
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
-.++++.+|..+...|+.++|...|+-++..+
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 24567778888888888888888887776643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-10 Score=99.07 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=114.5
Q ss_pred CcccHHHH--HHHHHHHHhcCC---hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHh
Q psy9209 106 NPNYLGVW--TLLGHEYMEMKN---TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR--------LPYYGLYYYKQAHM 172 (349)
Q Consensus 106 ~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~ 172 (349)
.|.++.+| +..|.-+...++ ...|+.+|+++++++|++..++-.++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45565655 566776766554 779999999999999999999988888776542 23455666666666
Q ss_pred c--CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 173 V--RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 173 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+ .|.++.++..+|......|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4 677788899999999999999999999999999999 5889999999999999999999999999999997
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-10 Score=83.11 Aligned_cols=116 Identities=16% Similarity=0.003 Sum_probs=74.2
Q ss_pred CcchHHHHHHHHHHHhhCccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNY---LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~ 162 (349)
.++...+...+++.++..|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 356666666666666666665 3455666777777777777777777777655433 3456667777777777777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777655 22333344566667777777777777777776653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=94.05 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=122.3
Q ss_pred cchHHHHHHHHHHH---hhCcccHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q psy9209 90 ESSSQAVLYFQRAL---KLNPNYLGVWTLLGHEYMEM---------KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 90 ~~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 157 (349)
...+.|+.+|.+++ .++|..+.++..++.++... ....+|....+++++++|.++.++..+|.+....
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 35678888999999 88999898888888887654 2345788889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcCcHHHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLNETEAAADLFM 236 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~ 236 (349)
++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....+-...-.+ .+.....++|+..|-
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 9999999999999999999999999999999999999999999999999999765443332222 334455778888775
Q ss_pred HHH
Q psy9209 237 EFV 239 (349)
Q Consensus 237 ~~~ 239 (349)
+-.
T Consensus 432 ~~~ 434 (458)
T PRK11906 432 KET 434 (458)
T ss_pred hcc
Confidence 543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=80.49 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPN--YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
|+++.|+..++++++.+|. +...++.+|.++.+.|++++|+..+++ .+.+|.+....+.+|.++..+|++++|+..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444444444444444442 222333344444444444444444444 3333333333444444444444444444444
Q ss_pred H
Q psy9209 168 K 168 (349)
Q Consensus 168 ~ 168 (349)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-09 Score=82.71 Aligned_cols=224 Identities=21% Similarity=0.178 Sum_probs=138.0
Q ss_pred cCCHHHHHHHHHHHhhhhhch--HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--hCcccHHHHHHHHHHHHhcCChH
Q psy9209 52 ANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKRQPDESSSQAVLYFQRALK--LNPNYLGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 52 ~~~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 127 (349)
.+.+..+...+...+...+.. ... ....+..+...+.+..+...+...+. ..+.....+...+..+...+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGL---LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHH---HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 355555666666666555442 222 22222333344666777777666665 45666666667777777777777
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy9209 128 AAIQCYRQAIEINNLDYRAWYGLGQ-TYEILRLPYYGLYYYKQAHMVRP---NDPRMLTALGEAFEKQEKISEAMKCYNK 203 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 203 (349)
.++..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7777777777665555444444444 66677777777777777666554 2334445555556666677777777777
Q ss_pred HHccccc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 204 SRAIGDA-DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 204 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
++...+. ....+..++..+...++++.|...+..++...|. ....+..++..+...+.++++...+.+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---------NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---------cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777666 4666666777777777777777777777666654 45555666666665556677777777766
Q ss_pred cccCC
Q psy9209 283 QHEET 287 (349)
Q Consensus 283 ~~~~~ 287 (349)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 66665
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-10 Score=100.79 Aligned_cols=215 Identities=16% Similarity=0.082 Sum_probs=106.4
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-Ccc----cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 96 VLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-NNL----DYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+-|++.+..+|+....|...-..+.+.++.++|.+..++|+.. ++. -..+|..+-.....-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555542 221 1223333333333334444444455555
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
.+.. +...++..|..+|...+++++|.++++.+++.......+|..+|..++.+++-+.|...+.+|+...|.
T Consensus 1524 cqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------ 1596 (1710)
T KOG1070|consen 1524 CQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK------ 1596 (1710)
T ss_pred HHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch------
Confidence 4432 112344445555555555555555555555554444555555555555555555555555555554443
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
..+.......|.+-++.|+.+.+...|+..+...|...+.|..+.+.-.+.|+.+.+...|++++.+
T Consensus 1597 -~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1597 -QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred -hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 1134444445555555555555555555555555555555555555555555555555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=79.14 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNL--DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
.|+++.|+..++++++..|. +...++.+|.++...|++++|+.++++ ...+|.++...+.+|.++.++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888887774 455677778888888888888888877 667777777777778888888888888888
Q ss_pred HHHH
Q psy9209 201 YNKS 204 (349)
Q Consensus 201 ~~~a 204 (349)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-07 Score=75.61 Aligned_cols=289 Identities=15% Similarity=0.046 Sum_probs=212.9
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
-.||-..|.+.-.+.-+.+... ..| .+...-++.....|+++.|.+-|+.++. +|..-. .-+..+...-.
T Consensus 96 gAGda~lARkmt~~~~~llssD-qep------LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRl--lGLRgLyleAq 165 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSD-QEP------LIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRL--LGLRGLYLEAQ 165 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhcc-chH------HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHH--HhHHHHHHHHH
Confidence 3567777777766654333221 112 4566678888899999999999998876 343221 12333334445
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CcccH---H--HHHHHHHHHHHhCC
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI---NNLDY---R--AWYGLGQTYEILRL 159 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~---~--~~~~l~~~~~~~~~ 159 (349)
..|+.+.|..+.+++-...|..+.++...-...+..|+++.|+++.+..... .++.. . .+...+.. .-..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCC
Confidence 5799999999999999999999998888888889999999999999877653 22211 1 12222222 22346
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
...|...-.++.++.|+....-..-+..++..|+..++-.+++.+.+..| ++.++ .+|....--+.++.-++++-
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia----~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIA----LLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHH----HHHHHhcCCCcHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999988 45543 33333333344555555544
Q ss_pred ---hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc-CCCCCchhHHHHh
Q psy9209 240 ---SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQPMECA 315 (349)
Q Consensus 240 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a 315 (349)
.+.|+ +.+.....+..-+.-|++..|..--+.+....|.. .++.+++.+.... |+-.+...++-++
T Consensus 320 ~L~slk~n---------naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 320 KLESLKPN---------NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHhcCcc---------chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 44555 89999999999999999999999999999988764 5667778887665 9999999999999
Q ss_pred hhcCCCCC
Q psy9209 316 VVLDPVPP 323 (349)
Q Consensus 316 ~~~~p~~~ 323 (349)
+.- |.+|
T Consensus 390 v~A-PrdP 396 (531)
T COG3898 390 VKA-PRDP 396 (531)
T ss_pred hcC-CCCC
Confidence 864 4433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-10 Score=97.18 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhCC
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK--------NTNAAIQCYRQAIEI--NNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 159 (349)
++...|+.+|+++++++|++..++..++.++.... +...+.....+++.+ +|.++.++..+|......|+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 34566666666666666666666665555553321 233444445554443 45556666666666666677
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
+++|...+++++.++| +..++..+|.++...|++++|++.|++++.++|..+.
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 7777777777777776 3566677777777777777777777777777666553
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=92.49 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---------------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
.....|..+++.|+|..|...|++++..-+. ...++.+++.++.++++|.+|+...++++.+.|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 3456788999999999999999998875221 1457889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhcccc
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA-ADLFMEFVSKLDT 244 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~ 244 (349)
+..+++..|.++..+|+++.|+..|++++++.|.|..+...+..+..+...+.+. .+.|.+++...+.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999888877766655 7888888876553
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-08 Score=93.38 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-hhhc----hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQ-HEET----AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTL 115 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~~~----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (349)
.|......+++.++.++|.+..++++. +++. ....|..+.++-..| |.-+.-.+.|+++.+.... ..++..
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~-~~V~~~ 1535 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA-YTVHLK 1535 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch-HHHHHH
Confidence 455555556666666777777766663 2221 223444555554444 5555566666666654432 345666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhhC
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQEK 193 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 193 (349)
|..+|...+.+++|.++++.+++...+...+|..++..+.+..+-+.|...+.+|++.-|. +.......|.+-++.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 6666666666677777776666665556666666666666666666666666666666665 44555566666666666
Q ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 194 ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
.+.+...|+-.+...|...+.|.-+...-.+.|+.+-+...|++++.+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666666666666643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-10 Score=79.59 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=98.7
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHH
Q psy9209 137 IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF 216 (349)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 216 (349)
..+.++..+..+..|.-++..|++++|...|+-+...+|.+++.+..+|.++..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34456667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 217 KLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 217 ~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
..|.|+..+|+.+.|+..|+.++..
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999883
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=73.69 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=32.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-10 Score=90.83 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHh---------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc
Q psy9209 160 PYYGLYYYKQAH---MVRPNDPRMLTALGEAFEKQ---------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE 227 (349)
Q Consensus 160 ~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 227 (349)
.+.|+.+|.+++ .++|+...++..++.++... ....+|....+++++++|.++.++..+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 356677777777 67777777777777776643 234566777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH-HHHcCCCC
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI-AQKRQPDE 306 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~ 306 (349)
++.|...|++++.++|+ .+.+|+..|.+..-.|+.++|...++++++++|....+-...-.+ .....-.+
T Consensus 354 ~~~a~~~f~rA~~L~Pn---------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~ 424 (458)
T PRK11906 354 AKVSHILFEQAKIHSTD---------IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLK 424 (458)
T ss_pred hhhHHHHHHHHhhcCCc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchh
Confidence 77777777777777777 677777777777777777777777777777777655443333333 22244455
Q ss_pred CchhHHHH
Q psy9209 307 SSSQPMEC 314 (349)
Q Consensus 307 ~A~~~~~~ 314 (349)
+|+..|-+
T Consensus 425 ~~~~~~~~ 432 (458)
T PRK11906 425 NNIKLYYK 432 (458)
T ss_pred hhHHHHhh
Confidence 66665544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-08 Score=80.51 Aligned_cols=224 Identities=22% Similarity=0.209 Sum_probs=191.7
Q ss_pred cchHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPN--YLGVWTLLGHEYMEMKNTNAAIQCYRQAIE--INNLDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
+....+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 5667777788888777776 367888899999999999999999999987 678888899999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHH-HHHHhhCHHHHHHHHHHHHcccc---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 166 YYKQAHMVRPNDPRMLTALGE-AFEKQEKISEAMKCYNKSRAIGD---ADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+..++...+.........+. ++...|++++|...+.+++...| .........+..+...++++.|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 999999988877666666666 89999999999999999988776 35666777777788899999999999999998
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
.+.. ....+..++..+...++++.|...+..++...|........++..+...+..+++...+.+++...|.
T Consensus 197 ~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Cccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7761 37888999999999999999999999999999987677777777777777789999999999988886
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-10 Score=81.79 Aligned_cols=104 Identities=13% Similarity=-0.092 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++++|....+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHccccccHH
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
--|++.-|.+-+.+-.+.+|++|.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999988765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-10 Score=88.35 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=86.0
Q ss_pred hHHHHHHHHHH-HHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 178 PRMLTALGEAF-EKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 178 ~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
....+..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|...|++++|+..|++++...|+ ++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~------s~~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK------SPK 215 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------Ccc
Confidence 35566666655 45688888888888888888876 468888888888888888888888888888776 555
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
.+++++.+|.++...|++++|...|+++++..|+...+..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 7888888888888888888888888888888887765443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-11 Score=73.02 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=32.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-08 Score=76.87 Aligned_cols=165 Identities=16% Similarity=0.070 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH---HHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR---MLT 182 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 182 (349)
.+..++.-|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35667778888888888888888888888776654 566777888888888888888888888888777663 455
Q ss_pred HHHHHHHHh--------hCHHHHHHHHHHHHccccccHH-----------------HHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 183 ALGEAFEKQ--------EKISEAMKCYNKSRAIGDADGK-----------------ALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 183 ~l~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
..|.++... .-..+|+..|+..+...|++.. --..+|..|.+.|.+..|+..++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 556555432 2345677777777777776421 113456666777777777777777
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+++..|+ .+...+++..+..+|..+|-.++|...-.
T Consensus 193 v~e~y~~------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 193 VLENYPD------TSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHhcccc------ccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 7766555 34456666666777777776666665533
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-10 Score=89.92 Aligned_cols=129 Identities=17% Similarity=0.067 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----C-----------hHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPN----D-----------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
...-|..+++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+....+++.++|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 446688999999999999999998876321 1 1468899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH-HHHHHHHHcc
Q psy9209 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA-YKCAQKCLQH 284 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~ 284 (349)
..++++.|.++..+|+++.|+..|+++++..|. +..+...|..+..+..++.+. .+.|.+++..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---------Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPS---------NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999 788888888887776655444 6777777654
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-08 Score=74.47 Aligned_cols=254 Identities=14% Similarity=0.051 Sum_probs=132.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCCh
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT 126 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 126 (349)
+-++-.|+|..++..-++.-... ..++.. ..+++.|...|.+...+......- .....+...++.....-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d---~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELD---VYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHH---HHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 34555677777766655544332 222221 112222333344433322221111 11123334444444444444
Q ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 127 NAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 127 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
++-+.-..+.+... ..+......-|.++...|++++|++..... .+.++...-..++.++.+.+-|...++++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333221 112233344455666777777777666552 23445555556666777777777777777
Q ss_pred HccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 205 RAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
.+++.+ .++..||..+.. .+++.+|.-+|++.-...|. .+......+.++..+|++++|...++.
T Consensus 164 q~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---------T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 164 QQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---------TPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---------ChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 666543 233334333332 24566677777766664444 466677777777777777777777777
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCCchh-HHHHhhhcCCCCC
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDESSSQ-PMECAVVLDPVPP 323 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~p~~~ 323 (349)
++..++++++.+.++-.+....|...++.+ ...+.....|+++
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 777777777777777776666776654433 3344444555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=74.54 Aligned_cols=96 Identities=20% Similarity=0.114 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---ChHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN---DPRMLTAL 184 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 184 (349)
.+++.+|.++-..|+.++|+.+|++++..... ...++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46677888888888888888888888875332 3567778888888888888888888888887777 56667777
Q ss_pred HHHHHHhhCHHHHHHHHHHHHc
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888888888888887776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=90.58 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=99.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (349)
+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344555678888888888888877764 55668888888888888999999998888888888888888888889999
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
.|+.+.+++++..|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999988889999999999999999888777644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=85.29 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=70.1
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHH
Q psy9209 111 GVWTLLGHEY-MEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PRMLTA 183 (349)
Q Consensus 111 ~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 183 (349)
...+..|..+ ...|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|++++...|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4455555554 45577777777777777777765 4677777777777777777777777777666653 466667
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
+|.++...|++++|+..|+++++..|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777777777777777777777777766543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=89.82 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=109.2
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
......++++.|+..+++..+.+|+ +...++.++...++-.+|+..+++++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344468999999999999988875 6677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+.+.+++....|++...|..|+.+|...|+++.|+..++.+--
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999999999999999999999988876543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-08 Score=86.80 Aligned_cols=259 Identities=15% Similarity=0.173 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
..+....+.|..++|...|.+.-..+ ++..+ |...|.+++|.+..+.-=.+. ....|++.+..+...
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKl---yQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKL---YQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHH---HHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhh
Confidence 34555566677777777777654322 12222 223355555555544321111 123455555555555
Q ss_pred CChHHHHHHHHHH----------HHhCcc----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------
Q psy9209 124 KNTNAAIQCYRQA----------IEINNL----------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMV---------- 173 (349)
Q Consensus 124 ~~~~~A~~~~~~a----------~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------- 173 (349)
++.+.|+++|+++ +.-+|. ++..|...|..+...|+.+.|+.+|..+-..
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence 5555555555543 111221 2334444455555555555555555555332
Q ss_pred -----------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc------ccc--------------HHHHHHHHHHH
Q psy9209 174 -----------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG------DAD--------------GKALFKLAKLY 222 (349)
Q Consensus 174 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~--------------~~~~~~l~~~~ 222 (349)
...+..+.+.+|+.|...|+..+|+.+|.++-... ..+ +.-....+..|
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence 22345667778888888888888888877764321 100 11111223333
Q ss_pred HhcC-cHHHHHHHHHHH------Hhccccc---------CCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH-----
Q psy9209 223 DKLN-ETEAAADLFMEF------VSKLDTF---------AAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC----- 281 (349)
Q Consensus 223 ~~~~-~~~~A~~~~~~~------~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----- 281 (349)
...| +.+.|...|.++ +++.-.. ....+...++..+..-+..+....+|++|..++-.+
T Consensus 1032 Ee~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred HHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333 444444444332 1110000 001122336888888999999999999998766544
Q ss_pred -Hcc----------------cC---------ChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 282 -LQH----------------EE---------TAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 282 -~~~----------------~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
+++ .| ....++..++.+..++|.+..|.+-|.+|
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 322 11 12466778899999999999888877765
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-07 Score=69.36 Aligned_cols=255 Identities=13% Similarity=0.016 Sum_probs=173.1
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
|-++-.|+|..++..-++.- ..+.. ......+.+.|...|++...+......- ...+.....++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~---~e~d~y~~raylAlg~~~~~~~eI~~~~------~~~lqAvr~~a 79 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS-------SSKTD---VELDVYMYRAYLALGQYQIVISEIKEGK------ATPLQAVRLLA 79 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc-------cccch---hHHHHHHHHHHHHccccccccccccccc------CChHHHHHHHH
Confidence 34556788888886554332 11111 1346678888888888765554433322 11111233333
Q ss_pred HhcCCCcchHHHHHHHHHHHhhC--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLN--PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
.....-++.++-+....+.+... ..+......-|.++...|++++|.....+.. +.++...-..++.+..+.+
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFD 154 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHH
Confidence 33333445455554444443322 2233455666788999999999999887732 3455555567888899999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
-|.+.++++.+++.+ ..+..+|..+.. .+++.+|.-+|+..-+..|..+.....++.++..+|++++|...++.
T Consensus 155 ~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 155 LAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 999999999887543 455556666654 35688999999999887777899999999999999999999999999
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH-HHHHHHHcccCChHH
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY-KCAQKCLQHEETAEE 290 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~ 290 (349)
++..+++ .++.+.++..+-...|...++. +++.+.....|+.+-
T Consensus 233 aL~kd~~---------dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 233 ALDKDAK---------DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhccCC---------CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999888 7999999998888888776654 455555566676553
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=91.24 Aligned_cols=232 Identities=12% Similarity=0.014 Sum_probs=158.9
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
-.-|..|+++|.|++|+.+|.+++..+|.++..+.+.+..|++.+.+..|...+..++.++.....+|...+..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 44566788889999999999999999998888899999999999999999999999999988888889999998889999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHH---------HHHHHHHhcCcHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF---------KLAKLYDKLNETEA 230 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~l~~~~~~~~~~~~ 230 (349)
..+|.+-++.++.+.|++.+..-.++.+-. ..++. -+.+..|....+.. .-|..+...|.++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence 999999999999999987665544443322 22211 11112222111111 12445556666666
Q ss_pred HHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchh
Q psy9209 231 AADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQ 310 (349)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 310 (349)
++..+.+-+..... ....-.+ +..+.+.-+++.++.-..+++..+|........-+...--.|...++..
T Consensus 253 ~i~~~~~~~A~~~~---------~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~ 322 (536)
T KOG4648|consen 253 PVVDVVSPRATIDD---------SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKP 322 (536)
T ss_pred ceeEeeccccccCc---------cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCc
Confidence 66666554443322 1111122 5566666788888888888877776554444444444455666778888
Q ss_pred HHHHhhhcCCCCCCccccC
Q psy9209 311 PMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 311 ~~~~a~~~~p~~~~~~~~~ 329 (349)
.++.++.+.|.+......+
T Consensus 323 ~~~T~~~~~P~~~~~~~~~ 341 (536)
T KOG4648|consen 323 TKQTAVKVAPAVETPKETE 341 (536)
T ss_pred chhheeeeccccccchhhh
Confidence 8888998888877655433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-08 Score=70.62 Aligned_cols=149 Identities=16% Similarity=0.085 Sum_probs=92.6
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM-VRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
+.=+++....-..+.++..|. ..-.+.||......|++.+|...|++++. +..+++..+..+++..+..+++..|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 333444444444444444443 23345666666667777777777766664 3455666666677777777777777777
Q ss_pred HHHHHccccc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 201 YNKSRAIGDA--DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 201 ~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
+++..+.+|. .++....+|.++..+|++.+|...|+.++...|. +......+..+.++|+.++|...+
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhcchhHHHHHH
Confidence 7777666554 4556666677777777777777777777776665 566666666777777666665554
Q ss_pred HHH
Q psy9209 279 QKC 281 (349)
Q Consensus 279 ~~a 281 (349)
...
T Consensus 217 ~~v 219 (251)
T COG4700 217 VAV 219 (251)
T ss_pred HHH
Confidence 443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-08 Score=73.91 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHH---HHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLG---VWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l 116 (349)
..|+.-|...++.|++++|+..|+.+....|..+.....+..++.++++.++++.|+...++-+.+.|.++. +++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 578899999999999999999999999998888887777888888889999999999999999999887654 56677
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHHhCccc
Q psy9209 117 GHEYMEM--------KNTNAAIQCYRQAIEINNLD 143 (349)
Q Consensus 117 a~~~~~~--------~~~~~A~~~~~~a~~~~~~~ 143 (349)
|.++... .-...|+..|+..+...|+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 7775432 12346677777777777764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-08 Score=70.95 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=129.3
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE-INNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
=+++.......+.+...|. ..-.+.+|......|++.+|...|++++. +...++..+..+++.....+++..|...++
T Consensus 70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3677777777777777776 34568899999999999999999999987 456778899999999999999999999999
Q ss_pred HHHhcCCC--ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 169 QAHMVRPN--DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 169 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
+..+.+|. .+.....+|.++..+|++.+|...|+.++...| .+......+..+.++|+.++|..-+....+.
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99998875 467888999999999999999999999999988 5777788889999999988888777665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.3e-09 Score=70.97 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc---cHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN---YLGVWTLLG 117 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la 117 (349)
+++.+|.++-..|+.++|+.+|++++......+.....+..++..+...|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34555566666666666666666665544333333333444444454555555555555555555554 444445555
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~ 137 (349)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-07 Score=72.32 Aligned_cols=256 Identities=10% Similarity=-0.000 Sum_probs=190.8
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|+.-.-.|+++.|.+-|+-++ .+|+-.. .-+..|-......|..+.|+.+-+.+-...|.-+-++....
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl-------~dPEtRl--lGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL- 195 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAML-------DDPETRL--LGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL- 195 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHh-------cChHHHH--HhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH-
Confidence 3556667899999999998888 4443211 12333333445789999999999999999998776643322
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhh---CcccH---HHHHHHHHHH-HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKL---NPNYL---GVWTLLGHEY-MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~---~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
......|+++.|+++.+..... .++.. .+-..-+... .-..+...|...-.+++++.|+....-..-+..+
T Consensus 196 --e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 196 --EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred --HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 2234469999999999876543 23221 1112222222 2234578899999999999999988888899999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH---HccccccHHHHHHHHHHHHhcCcHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS---RAIGDADGKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---~~~~~~~~~~~~~l~~~~~~~~~~~~A 231 (349)
.+.|+..++-.+++.+.+..|... ++..|....--+.++.-++++ ..+.|++.+.....+.....-|++..|
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHH
Confidence 999999999999999999888632 344454444444555555544 455899999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh-CCHHHHHHHHHHHHcc
Q psy9209 232 ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA-NNLDTAYKCAQKCLQH 284 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 284 (349)
..--+.+....|. ..++..++.+-... |+-.++..++-++++.
T Consensus 349 Ra~Aeaa~r~~pr----------es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 349 RAKAEAAAREAPR----------ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhhCch----------hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999999986 77888899988776 9999999999999875
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=68.11 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=32.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 156 ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3445555555555555555555555555555555555555555555555555554444444433
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.8e-10 Score=68.27 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 151 (349)
|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555444444433
|
... |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-10 Score=90.40 Aligned_cols=235 Identities=13% Similarity=0.006 Sum_probs=167.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM 121 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 121 (349)
+...|+.|+++|.|++|+.+|.+++..+|.++.. ..+.+.+|.+...+..|..-+..++.++.....+|...|..-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988766 3455566778899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH---------HHHHHHHHHhh
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML---------TALGEAFEKQE 192 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~ 192 (349)
.+|...+|.+.++.++++.|++.+..-.++.+- ...++. -+.+..|....+. -.-|..+...|
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARIN----SLRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKA 248 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhh
Confidence 999999999999999999999766554444332 222221 1122222322222 22356667788
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
.++.++.++.+-+.....+.....+ +..+.+..+++.++....+++...|.. ......-+..-.-.|...
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~---------~~~~s~~~~A~T~~~~~~ 318 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP---------MPDTSGPPKAETIAKTSK 318 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc---------CcccCCCchhHHHHhhhh
Confidence 8888888887776665544444344 666777788888888888877776652 222222233333345667
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 273 TAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 273 ~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
++...++.++.+.|.+......+..
T Consensus 319 E~K~~~~T~~~~~P~~~~~~~~~sr 343 (536)
T KOG4648|consen 319 EVKPTKQTAVKVAPAVETPKETETR 343 (536)
T ss_pred hcCcchhheeeeccccccchhhhhh
Confidence 8888888888888876555444443
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-07 Score=80.52 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHH------HHHhcccccC----------------CCCCCcchHHHHHHHHHHHHHh
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFM------EFVSKLDTFA----------------APPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~------~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
+|..+..-+..+....+|++|...+- .++.+..+.+ ..........++..+|.++.++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 57778888888888899999887654 4444432211 0112223567888999999999
Q ss_pred CCHHHHHHHHHHH
Q psy9209 269 NNLDTAYKCAQKC 281 (349)
Q Consensus 269 g~~~~A~~~~~~a 281 (349)
|.|..|-+-|.++
T Consensus 1159 G~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQA 1171 (1416)
T ss_pred cchHHHHHHHhhh
Confidence 9999998888776
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=66.57 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
.+|...+++++|++++++++..+|.++..+...|.++...|++++|+..++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344444555555555555555555544455555555555555555555555555444444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=66.21 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 218 (349)
..+|...+++++|+.++++++..+|+++..+...|.++...|++.+|+..++++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666555544433
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-06 Score=70.65 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhhc---hHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHh-h-------
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCL-QHEET---AEEA--KSLLRSIAQKRQPDESSSQAVLYFQRALK-L------- 105 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l-~~~~~---~~~~--~~~l~~~~~~~~~~~~~~~A~~~~~~~~~-~------- 105 (349)
.++...+..++..|++.+|.+.+...- ...|. .+.. .....+++.++++.|.+.-+..+|.++++ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778888888888888887765432 22222 1111 11124556667777888888888888885 1
Q ss_pred -Cc---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC----------------
Q psy9209 106 -NP---------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL---------------- 159 (349)
Q Consensus 106 -~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---------------- 159 (349)
.| ...+..++.|..|...|++-.|.++|.++......+|..|..++.+.....+
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i 400 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEI 400 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccc
Confidence 11 1345678888888889999899999988888888888888888887652100
Q ss_pred ---------------------------------HHHHHHHHHHHHhc---------------------------------
Q psy9209 160 ---------------------------------PYYGLYYYKQAHMV--------------------------------- 173 (349)
Q Consensus 160 ---------------------------------~~~A~~~~~~~~~~--------------------------------- 173 (349)
.+-|.-++..++-+
T Consensus 401 ~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~ 480 (696)
T KOG2471|consen 401 RVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTT 480 (696)
T ss_pred eeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCc
Confidence 12244445444433
Q ss_pred ------------CC-CCh-----------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH-----Hh
Q psy9209 174 ------------RP-NDP-----------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY-----DK 224 (349)
Q Consensus 174 ------------~~-~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-----~~ 224 (349)
.| ..+ .++.+.+.+-..+|+.-.|+..-++.++. |+...++..+|.+| ..
T Consensus 481 ~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~l 559 (696)
T KOG2471|consen 481 DSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCL 559 (696)
T ss_pred chhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 11 111 23456677778899999999999888876 34556666666554 45
Q ss_pred cCcHHHHHHHHHHHHhcc-----------------------cccC------CCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 225 LNETEAAADLFMEFVSKL-----------------------DTFA------APPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~-----------------------~~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
+.+..+|...+.--+--. |..+ ......-....+++||..+.-+|++++|.
T Consensus 560 ldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk 639 (696)
T KOG2471|consen 560 LDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAK 639 (696)
T ss_pred cCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHH
Confidence 677777776665421111 1100 00111123457889999999999999999
Q ss_pred HHHHHHHcccC--ChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 276 KCAQKCLQHEE--TAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 276 ~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
.++..+..+-+ ..+.+...--.+-.++|+...|...+++.
T Consensus 640 ~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 640 SLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 99999988766 45566666666777899999999988874
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-08 Score=76.22 Aligned_cols=106 Identities=18% Similarity=0.095 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA 257 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
.+..|.-+...|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+ ++..+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------SPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------CCCChHH
Confidence 4556666666666666666666666665553 456666666666666666666666666666665 4445666
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 258 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
++.||.+...+|+.++|...|+++++..|+.+.+.
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 66666666666666666666666666666655443
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-06 Score=77.41 Aligned_cols=226 Identities=10% Similarity=0.001 Sum_probs=155.8
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
.+++.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 37889999999999999999888888899999999999999987777766777778888888899999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH-HHHHHhcCcH---------HHHHHHHHHH
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL-AKLYDKLNET---------EAAADLFMEF 238 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-~~~~~~~~~~---------~~A~~~~~~~ 238 (349)
++...+|+ ...+..+-.+|.+.+.|.+-.+.--+..+..|.++..+... ..+....... .-|....++.
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 99999998 77777777888888877765555445555667666544433 3333333222 2344555555
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hcc-cCChHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC-LQH-EETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
++.... -....++.. .-.++..+|++++|...+..- .+. .+.+......-...+...+++.+-.+...+++
T Consensus 181 l~~~gk------~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 181 LEKKGK------IESEAEIIL-YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred hccCCc------cchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 554311 111233322 235667788999999998433 233 33333333444566666777777777777777
Q ss_pred hcCCCC
Q psy9209 317 VLDPVP 322 (349)
Q Consensus 317 ~~~p~~ 322 (349)
...+++
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 777776
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-08 Score=71.76 Aligned_cols=109 Identities=22% Similarity=0.175 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 187 (349)
+-.-|.-++..|+|++|..-|..|+++.|.. ...+.+.|.++.+++.++.|+.-..++++++|....++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3445777888889999999999999887764 34567788888888999999999999999999888888888899
Q ss_pred HHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
|.+..++++|+.-|++.++.+|....+.-.++.+
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9888899999999999998888766655554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.8e-08 Score=66.72 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 183 (349)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4566777777777788888888877777765543 56677777778888888888888888887777765 45666
Q ss_pred HHHHHHHhhC
Q psy9209 184 LGEAFEKQEK 193 (349)
Q Consensus 184 l~~~~~~~~~ 193 (349)
.|.++..+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 6666665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=77.80 Aligned_cols=107 Identities=16% Similarity=0.078 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc---cHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN---YLGVWTLLGH 118 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~ 118 (349)
.+..+.-++..|+|..|...|..-++..|+....-.....++.+++.+|+++.|...|..+.+..|+ -+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5667777777777888888888877777776655555556666677777888888888777776654 3567788888
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
+...+|+.++|...|+++++..|....+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888877777655443
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-08 Score=70.98 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
+-.-|.-++..|+|++|..-|..++.+.|..+ ..+.+.|.++.++++++.|+.-..++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44557788999999999999999999998765 4677889999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcccc
Q psy9209 222 YDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 222 ~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
|.++.++++|+..|++.++.+|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999998
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=66.14 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcch
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
+..++.-|...++.|+|++|++.|+.+....|. ...+...++.+|...|++++|+..+++.+++.|. ++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~------hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT------HPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CCCc
Confidence 355667777777777777777777777776554 3456677777777777777777777777777776 5556
Q ss_pred HHHHHHHHHHHHHhCC---------------HHHHHHHHHHHHcccCChHH
Q psy9209 255 FFAFKYLANHHLKANN---------------LDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~---------------~~~A~~~~~~a~~~~~~~~~ 290 (349)
..+++..|.+++.+.. ...|...|++.+...|++..
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 7777777777777654 55666666666666666543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-09 Score=66.63 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
|+...++.++|.++..+|++++|+.+|++++.+.... ....+....++.++|.++..+|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567789999999999999999999999999874331 1123446889999999999999999999999999876
|
... |
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-06 Score=65.66 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=140.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
.-+.+....|+..+.+.-+......-.+. + .........+..+..+++-+ ..+.+.+..++.-.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~i------i----~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~ 190 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKI------L----ANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGM 190 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHH------H----HHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 34555566677666665555443321110 1 11111123355566665544 35678888999999
Q ss_pred CChHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHhhCHHH
Q psy9209 124 KNTNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR------PNDPRMLTALGEAFEKQEKISE 196 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 196 (349)
|+|.-.+..+.+.++.+ |..+.....+|.+-.+.|+.+.|..++++.-+.. .....+..+.+.++...+++..
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 99999999999999987 5678888899999999999999999999655432 2234567788889999999999
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 197 AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 197 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
|...+.+++..+|.++.+..+.|.|....|+..+|++.++.++...|.
T Consensus 271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999887
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-07 Score=68.89 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (349)
...|.+....|+..+.+.-+......-. .+..........+..+..+++-+ ..+.+.+..++...|.
T Consensus 126 ~lhAe~~~~lgnpqesLdRl~~L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kE 192 (366)
T KOG2796|consen 126 ILHAELQQYLGNPQESLDRLHKLKTVVS-------KILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKE 192 (366)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHH-------HHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchh
Confidence 3445666667777776665554433210 01111111112233333333322 1344555555556666
Q ss_pred HHHHHHHHHHHHccc-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 194 ISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
|.-....+.++++.+ |..+.....+|.+.++.|+.+.|..+++.+-+.... .........+..+.+.++.-.+++.
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---L~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---LDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh---hhccchhHHHHhhhhhheecccchH
Confidence 666666666666654 344555556666666666666666666544432222 1112223445555555566666666
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 273 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 273 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
.|...+.+.+..+|.++.+-...+.|....|+..+|++.++.+++..|..
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 66666666666666666666666666666666666666666666665553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=65.14 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 108 NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 108 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
+...++.++|.+|..+|++++|+.+|++++++. |....++.++|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344566667777777777777777777766541 112445566666666666666666666666543
|
... |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-05 Score=70.58 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=155.2
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
..+++.+|.....+.+++.|... .+....|..+.+.|..++|..+++..-...+++... +..+..+|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~---------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t---Lq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL---------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT---LQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH---HHHHHHHHH
Confidence 45788899999888886555443 567778888999999999998777766666666555 444445577
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhCCHH-----
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY-EILRLPY----- 161 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~----- 161 (349)
..|++++|..+|++++..+|. ......+-.+|.+.+.|.+-.+.--+..+..|+.+-.++....+. ......+
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccc
Confidence 779999999999999999999 777788888888888887766666666667787765544444433 3333322
Q ss_pred ----HHHHHHHHHHhcC-CCChH-HHHHHHHHHHHhhCHHHHHHHHHHH-Hcc-ccccHHHHHHHHHHHHhcCcHHHHHH
Q psy9209 162 ----YGLYYYKQAHMVR-PNDPR-MLTALGEAFEKQEKISEAMKCYNKS-RAI-GDADGKALFKLAKLYDKLNETEAAAD 233 (349)
Q Consensus 162 ----~A~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 233 (349)
-|....++.++.. +-... =....-.++..+|++++|...+..- .+. .+.+...-......+...+++.+-.+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 3455566666554 22211 1223345666789999999998432 233 34444444556677788889998888
Q ss_pred HHHHHHhcccc
Q psy9209 234 LFMEFVSKLDT 244 (349)
Q Consensus 234 ~~~~~~~~~~~ 244 (349)
...+++...++
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 88888888776
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-07 Score=61.30 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=55.4
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Q psy9209 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN 263 (349)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (349)
.|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++... .......++...|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-----~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-----QTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666666666666666666666655433 12223445555666
Q ss_pred HHHHhCCHHHHHHHHHHHHcc
Q psy9209 264 HHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 264 ~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+|..+|+-+.|..-|+.+-++
T Consensus 124 lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHh
Confidence 666666666666666655544
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-06 Score=70.24 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=186.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hhC------cc--cHHHH
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRAL-KLN------PN--YLGVW 113 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~-~~~------~~--~~~~~ 113 (349)
......+.+..+...+....+.++....+.+.+..+-..+ ++-.|++.+|.+.+...- ... |. ....|
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~---eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQL---EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHH---HHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 3444555666777777777777766666666664444444 334599999998876531 112 22 22356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh---------Cc---------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEI---------NN---------LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~---------~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
.++|.+++++|.|.-+..+|.++++. .| ......++.|..|...|++-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 89999999999999999999999961 11 2357889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhC-------------------------------------------------HHHHHHHHHHHHc
Q psy9209 176 NDPRMLTALGEAFEKQEK-------------------------------------------------ISEAMKCYNKSRA 206 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~-------------------------------------------------~~~A~~~~~~a~~ 206 (349)
.+|..|..++.+.....+ .+=|.-+++.++-
T Consensus 367 ~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~ 446 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALY 446 (696)
T ss_pred cCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhh
Confidence 999999999998863210 1335556666553
Q ss_pred cccc----------------------------------------------c-----------HHHHHHHHHHHHhcCcHH
Q psy9209 207 IGDA----------------------------------------------D-----------GKALFKLAKLYDKLNETE 229 (349)
Q Consensus 207 ~~~~----------------------------------------------~-----------~~~~~~l~~~~~~~~~~~ 229 (349)
+-|. . ..++...+.+-..+|+.-
T Consensus 447 Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i 526 (696)
T KOG2471|consen 447 LLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPI 526 (696)
T ss_pred cCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 3110 0 234556777788999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH-----HHhCCHHHHHHHHHHHH------c---------------
Q psy9209 230 AAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH-----LKANNLDTAYKCAQKCL------Q--------------- 283 (349)
Q Consensus 230 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~a~------~--------------- 283 (349)
.|+..-.+.+.... ...++..||.+| .-+.+..+|..++.-.+ .
T Consensus 527 ~AL~~a~kLLq~~~----------lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~ 596 (696)
T KOG2471|consen 527 KALSAATKLLQLAD----------LSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHT 596 (696)
T ss_pred hHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccc
Confidence 99999999888643 456666666655 45577888877665411 0
Q ss_pred --ccCC---------------hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCC
Q psy9209 284 --HEET---------------AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 284 --~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 320 (349)
++|+ .......++.++..+|++++|..++..+..+-|
T Consensus 597 e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 597 ETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred cccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 0110 134457889999999999999999988887766
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-07 Score=60.35 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=42.4
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhCCHHHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD----YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A 163 (349)
..|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... -.++...|.+|...|+-+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 34555555555555555555555555555555555555555555555555543221 12344444455555555555
Q ss_pred HHHHHHHHhc
Q psy9209 164 LYYYKQAHMV 173 (349)
Q Consensus 164 ~~~~~~~~~~ 173 (349)
..-|+.+-++
T Consensus 135 R~DFe~AA~L 144 (175)
T KOG4555|consen 135 RADFEAAAQL 144 (175)
T ss_pred HHhHHHHHHh
Confidence 5555444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-08 Score=81.68 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=55.4
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRA---WYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
.+|+++.+++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357777888888888888888888888888888888887744 888888888888888888888888876
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.5e-07 Score=66.82 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=94.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHHHHHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRLPYYGLYYYKQAHMV-----RPNDPRMLTALG 185 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~ 185 (349)
+.+|...++|++|..++.++.+-..++ ..++-..+.+......+.++..+++++..+ .|+....-...+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 444455555555555555555332222 122333344444455555555555555543 222222222233
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
--..+..++++|+.+|++++.+-.. -.+.+...++++.+..++++|-..+.+-...... ....+.....+.
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---~~~y~~~~k~~v 194 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---CDAYNSQCKAYV 194 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH---HhhcccHHHHHH
Confidence 3334556677777777777665221 1334455666777777777777666654433222 111122344555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHccc----CChHHHHHHHHHHHHHcCCCCCchh
Q psy9209 260 YLANHHLKANNLDTAYKCAQKCLQHE----ETAEEAKSLLRSIAQKRQPDESSSQ 310 (349)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~ 310 (349)
....++....+|..|..+++...++. |.+..+...|-..|- .|+.++...
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 55566666667777777777765542 333444444444333 455544433
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-06 Score=64.68 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHcccccc------HHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 193 KISEAMKCYNKSRAIGDAD------GKALFKLAKLYDKL-NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
++.+|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+.... ..........+...+..-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYA 164 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHH
Confidence 4555555555555443221 12234556666544 6666777777766654433 111112344555566666
Q ss_pred HHhCCHHHHHHHHHHHHcccCChH-------HHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 266 LKANNLDTAYKCAQKCLQHEETAE-------EAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 266 ~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
...++|.+|+..|++.....-++. +....-|.|+....+.-.+...+++..+++|...+.+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 666777777777777655433322 2233345566655666666666677777777655543
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-06 Score=62.12 Aligned_cols=214 Identities=15% Similarity=0.111 Sum_probs=123.2
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHH---HHHHHHHhcCCCcchHHHHHHHHHHHhhCcc
Q psy9209 32 PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS---LLRSIAQKRQPDESSSQAVLYFQRALKLNPN 108 (349)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~---~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 108 (349)
.|+.......|..-+.+|....+|++|...+.++.+-..++...+. .+-..+........+.++..+++++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA------ 97 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA------ 97 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------
Confidence 3444444566667777777777777777777777754443322211 1111111222222333333333333
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLT 182 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 182 (349)
...|...|..+.|-..++++-+. ...-++++|+.+|++++.+...+. +.+.
T Consensus 98 --------s~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 98 --------SELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred --------HHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 33455556666655555555442 334567777777777776533322 4455
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHcc------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHH
Q psy9209 183 ALGEAFEKQEKISEAMKCYNKSRAI------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFF 256 (349)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
..++++.+..++++|...+.+-... .++....+.....++....+|..|...++...++..- ..++...
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f-----~~sed~r 229 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF-----LKSEDSR 229 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc-----cChHHHH
Confidence 6778888888888888777765433 2333445556666677777999999999887665322 2333566
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+..+|-..| ..|+.++....+..
T Consensus 230 ~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 230 SLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHh-ccCCHHHHHHHHcC
Confidence 666665544 55777776665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.1e-08 Score=80.80 Aligned_cols=69 Identities=13% Similarity=0.021 Sum_probs=65.9
Q ss_pred hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM---LTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.+|+++..++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999855 999999999999999999999999997
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=67.14 Aligned_cols=67 Identities=25% Similarity=0.265 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN----------TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+..++++.+|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777766655433 345666666666667777777777776666544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=66.19 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC--
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL----------PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK-- 193 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 193 (349)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++++.++|+...++.++|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6788999999999999999999999988876644 4678888999999999999999999999987654
Q ss_pred ---------HHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 194 ---------ISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 194 ---------~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
|++|..+|+++...+|++......|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67888899999999998766555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-05 Score=58.19 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=121.3
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----C-c-ccHHHHHHHHHHHHh
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL----N-P-NYLGVWTLLGHEYME 122 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~-~~~~~~~~la~~~~~ 122 (349)
+.-.+.+++|.+.|.++-.... + .+++..|-..|.++-+. + . +....+...+.+|.+
T Consensus 24 fgg~~k~eeAadl~~~Aan~yk-----------l------aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk 86 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYK-----------L------AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK 86 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHH-----------H------HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Confidence 3344578888888887643211 1 13334444444443322 1 1 123445555566554
Q ss_pred cCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEIL-RLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFE 189 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~ 189 (349)
+++++|+.++++++++..+-. ..+..+|.+|... .++++|+.+|+++-+...... ..+...+..-.
T Consensus 87 -~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred -cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 489999999999998755432 3355788888765 899999999999987644332 45666777778
Q ss_pred HhhCHHHHHHHHHHHHccccccH-------HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADG-------KALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..++|.+|+..|+++....-+++ ..++.-|.|++...+.-.+...+++..+++|.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 89999999999999887654443 34456677888888888899999999999997
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.8e-06 Score=64.49 Aligned_cols=162 Identities=9% Similarity=-0.052 Sum_probs=117.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCh---HHHHHHHHHHHHh
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RPNDP---RMLTALGEAFEKQ 191 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~ 191 (349)
-+.+....|++.+|...+++.++-.|.+.-++..--..+..+|+...-...+++.+.. +|+.| .+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455566788888888888888888888777777777778888888888888887766 55553 3444567777788
Q ss_pred hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
|-|++|.+.-+++++++|.+..+....+.++...|++.++.+++.+.-..-.. ........|...+.++...+.+
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----SWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----hhHHHhhhhHHHHHhhhcccch
Confidence 88888888888888888888888888888888888888888887765433221 1111234455667777777888
Q ss_pred HHHHHHHHHHH
Q psy9209 272 DTAYKCAQKCL 282 (349)
Q Consensus 272 ~~A~~~~~~a~ 282 (349)
+.|++.|.+-+
T Consensus 264 e~aleIyD~ei 274 (491)
T KOG2610|consen 264 EKALEIYDREI 274 (491)
T ss_pred hHHHHHHHHHH
Confidence 88888887654
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.2e-06 Score=64.98 Aligned_cols=154 Identities=12% Similarity=-0.054 Sum_probs=129.1
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHhCCHHH
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-NNLD---YRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~ 162 (349)
.-.|++.+|....++.++..|.+..++..--..+..+|+...-...+++.+-. +++. ..+.-.++-.+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34689999999999999999999988888888999999999999999999876 5555 4445566778889999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD----GKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
|.+..+++++++|.+.-+....+.++...|++.++.++..+.-..-... ..-|...+.++...+.++.|+++|.+-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765442211 223456788888899999999999865
Q ss_pred Hh
Q psy9209 239 VS 240 (349)
Q Consensus 239 ~~ 240 (349)
+-
T Consensus 274 i~ 275 (491)
T KOG2610|consen 274 IW 275 (491)
T ss_pred HH
Confidence 53
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00013 Score=60.86 Aligned_cols=123 Identities=13% Similarity=0.062 Sum_probs=75.5
Q ss_pred hhhHHhhC--cHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhh---hchH---
Q psy9209 3 NKLYDKLN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL-KANNLDTAYKCAQKCLQHE---ETAE--- 73 (349)
Q Consensus 3 a~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~---~~~~--- 73 (349)
|..+...| +...++.+++.... -.+.....+.....+|.+++ ...+++.|...++++..+. |...
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~------~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQ------FQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhc------cCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45556666 77888888877662 22222233456777777654 4677888999998887553 3321
Q ss_pred -HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHH----HHHHHHHHHHhcCChHHHHHHH
Q psy9209 74 -EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLG----VWTLLGHEYMEMKNTNAAIQCY 133 (349)
Q Consensus 74 -~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~ 133 (349)
++...+..+...+. ..+..+...+++++++....+- ..+.++.++.-..++..|++.+
T Consensus 88 f~a~SlLa~lh~~~~--~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLA--QSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 22333444333332 2677888888888887765542 2356677777777777666653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.4e-06 Score=68.53 Aligned_cols=194 Identities=20% Similarity=0.120 Sum_probs=123.7
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc-----------------------c--cH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN-----------------------L--DY 144 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------------~--~~ 144 (349)
.+++.-++..++|++++|+.+.++..++.- ......+|..+|+++++... . ..
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 466666667777777777766666666542 12234556666666554311 0 13
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-ccccHHHHHHHHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQEKISEAMKCYNKSRAI-GDADGKALFKLAKL 221 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~ 221 (349)
.+...+|.+..++|+.++|++.++..++..|. +..+..++..++...+.|.++...+.+--++ -|+.+...+.-+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 45567899999999999999999999988775 3468889999999999999999999886544 35556555554443
Q ss_pred HHh-------------cCc---HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH------HHHHHHhCCHHHHHHHHH
Q psy9209 222 YDK-------------LNE---TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL------ANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 222 ~~~-------------~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~ 279 (349)
..+ .|- -..|.+.+.++++.+|. .+..+..+ -.-..+.|+ .||+.+--
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH---------Vp~YLLe~K~LilPPehilkrGD-SEAiaYAf 409 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH---------VPKYLLEMKSLILPPEHILKRGD-SEAIAYAF 409 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC---------CchhhhccCCCCCChHHhcCCCc-HHHHHHHH
Confidence 322 121 23467888999999887 33333222 112344555 66776655
Q ss_pred HHHcccCChHHHHHHH
Q psy9209 280 KCLQHEETAEEAKSLL 295 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l 295 (349)
-.+..-...+.+..+|
T Consensus 410 ~hL~hWk~veGAL~lL 425 (539)
T PF04184_consen 410 FHLQHWKRVEGALNLL 425 (539)
T ss_pred HHHHHHhcCHhHHHHH
Confidence 5555444444444444
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-05 Score=65.27 Aligned_cols=192 Identities=11% Similarity=0.050 Sum_probs=133.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc---------------
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN--------------- 108 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------- 108 (349)
.+.....+..+...-++.-+++++++|+..+++.+++. .......+|..+++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE-----EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE-----EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc-----ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 45556677888999999999999999999998766652 1124567888888888764211
Q ss_pred ----------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CC
Q psy9209 109 ----------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--DYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RP 175 (349)
Q Consensus 109 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 175 (349)
...+...+|.+..+.|+.++|++.++..++..|. +..++.+|..++...+.|.++...+.+--++ -|
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 1223477899999999999999999999987765 4678999999999999999999998886433 24
Q ss_pred CChHHHHHHHHHHHH-hhC---------------HHHHHHHHHHHHccccccHHHHHHHHH------HHHhcCcHHHHHH
Q psy9209 176 NDPRMLTALGEAFEK-QEK---------------ISEAMKCYNKSRAIGDADGKALFKLAK------LYDKLNETEAAAD 233 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~-~~~---------------~~~A~~~~~~a~~~~~~~~~~~~~l~~------~~~~~~~~~~A~~ 233 (349)
..+...+.-+.+-.+ .++ -..|.+.+.+|++.+|.-+..+..+-. -..+.|+ .||+.
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAia 406 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIA 406 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHH
Confidence 444444443333222 111 134778899999999987776554321 2334454 55655
Q ss_pred HHHHHHhc
Q psy9209 234 LFMEFVSK 241 (349)
Q Consensus 234 ~~~~~~~~ 241 (349)
+---.+..
T Consensus 407 YAf~hL~h 414 (539)
T PF04184_consen 407 YAFFHLQH 414 (539)
T ss_pred HHHHHHHH
Confidence 54444443
|
The molecular function of this protein is uncertain. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-06 Score=69.79 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI-LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555556666666666654444445555555655444 3444446666666666666666666666666666
Q ss_pred hhCHHHHHHHHHHHHccccccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 191 QEKISEAMKCYNKSRAIGDADG---KALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.|+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666665543322 45555555556666666666666666555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-06 Score=68.78 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hhCHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK-QEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 223 (349)
-+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677777888888888999999999987666677888888888666 455555999999999998988898888888888
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH
Q psy9209 224 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 291 (349)
..|+.+.|..+|++++...+. ......+|......-...|+.+......+++.+..|.....
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887554 11134678888888888899998888888888887774443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00019 Score=60.03 Aligned_cols=224 Identities=15% Similarity=0.121 Sum_probs=156.5
Q ss_pred hcCCHHHHHHHHHHHhhhhhc------hHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHhh---Ccc-------c
Q psy9209 51 KANNLDTAYKCAQKCLQHEET------AEEA-----KSLLRSIAQKRQPDESSSQAVLYFQRALKL---NPN-------Y 109 (349)
Q Consensus 51 ~~~~~~~A~~~~~~~l~~~~~------~~~~-----~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-------~ 109 (349)
..|-+++|.++-++++..... .... ...+..+..+..-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 457788888888888754211 1111 122333444445579999999988877664 343 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-c--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh--------
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-D--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP-------- 178 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------- 178 (349)
+..+..+|......|.++.|...|..+.+.... + ..+..++|.+|.+.|+-+.--+.++. +.|.+.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 456688888888999999999999999886432 2 34456889999998876654444443 344422
Q ss_pred --HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 179 --RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 179 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
.+++..|...+.++++.+|...+.+.++.... .+-.+..+|.+....|+..++.+..+-++..... +.+
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK---i~D 520 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK---IPD 520 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc---CCC
Confidence 45677788888999999999999999988521 2345667899999999999999999999887766 444
Q ss_pred CcchHHHHHHHHHHHHHhCC--HHHHHHHHHH
Q psy9209 251 KTCGFFAFKYLANHHLKANN--LDTAYKCAQK 280 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 280 (349)
.+........+-.++...|+ -+...+.+.+
T Consensus 521 i~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 521 IPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred chHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 44455555667778888887 5555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00028 Score=58.61 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=47.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
|..++.+|++.++.-+-.=..++.| ++.++..+|.|.....++++|..++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5567889999999998888889999 8999999999999999999999988763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.9e-05 Score=62.23 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=132.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CcccHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHhcCCCChHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWYGLGQTYEI---LRLPYYGLYYYKQ-AHMVRPNDPRM 180 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~ 180 (349)
.+++..++-..|....+|+.-+++.+..-.+ -++.+.+...+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456677777899999999999888887665 44567777888888888 8999999999999 55567778899
Q ss_pred HHHHHHHHHHh---------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccc--CCC
Q psy9209 181 LTALGEAFEKQ---------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV-SKLDTF--AAP 248 (349)
Q Consensus 181 ~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~--~~~ 248 (349)
+..+|.+|... ...++|+.+|.++.+.+|+ ...=.+++.++...|...+.....++.. .+..-. ...
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 99999988642 3478999999999999964 3444556666666665433332222222 111100 002
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 249 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
.......+.+-.++.+..-.|++++|...+++++...|..-.....+..+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 22334566667788888889999999999999999987665544444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-07 Score=50.57 Aligned_cols=42 Identities=26% Similarity=0.511 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 152 (349)
.++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666655553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00018 Score=60.76 Aligned_cols=146 Identities=16% Similarity=0.057 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC-----
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD----ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA----- 246 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----- 246 (349)
.....|...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3445666677777777777777777777666431 1355666667777777777777777766665111100
Q ss_pred --------------------CCCCCcchHHHHHHHHHHHHHh------CCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 247 --------------------APPDKTCGFFAFKYLANHHLKA------NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 247 --------------------~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
..........++..+|...... +..+++...|.++++..|+...++..+|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0111233567888888888888 89999999999999999999999988887765
Q ss_pred HcCCC-----------------CCchhHHHHhhhcCCC
Q psy9209 301 KRQPD-----------------ESSSQPMECAVVLDPV 321 (349)
Q Consensus 301 ~~~~~-----------------~~A~~~~~~a~~~~p~ 321 (349)
..-+. ..|+..|-+++...|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 43221 2477888888888877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=65.36 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
.-+..++....+..|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+....++.+|........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 33445555667778888888888888887777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhc
Q psy9209 161 YYGLYYYKQAHMV 173 (349)
Q Consensus 161 ~~A~~~~~~~~~~ 173 (349)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888877554
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-06 Score=63.14 Aligned_cols=87 Identities=21% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 197 (349)
..+..-.+|..|+.+|.+++.++|..+..|.+.+.++.+..+++.+..-..+++++.|+....++.+|.+......+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHH
Q psy9209 198 MKCYNKS 204 (349)
Q Consensus 198 ~~~~~~a 204 (349)
+..+.++
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00055 Score=57.90 Aligned_cols=120 Identities=16% Similarity=0.100 Sum_probs=91.1
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc---cc---
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP----NDPRMLTALGEAFEKQEKISEAMKCYNKSRAI---GD--- 209 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~--- 209 (349)
.......|...+.+..+.|.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.. .+
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 334567788888888888888888888888877542 24677777888888888888888888877761 00
Q ss_pred ----------------------------ccHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 210 ----------------------------ADGKALFKLAKLYDKL------NETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 210 ----------------------------~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
....++..+|...... +..+++...|.+++...|. ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~ 292 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS---------WE 292 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh---------HH
Confidence 0134556667766666 8889999999999999998 77
Q ss_pred HHHHHHHHHHHHh
Q psy9209 256 FAFKYLANHHLKA 268 (349)
Q Consensus 256 ~~~~~l~~~~~~~ 268 (349)
.+|+.+|..+...
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 8898888887655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.4e-07 Score=50.00 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
.++..+|.+|...|++++|+..|+++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578899999999999999999999999999999999998875
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00019 Score=59.30 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=15.5
Q ss_pred CcchHHHHHHHHH-HHhhCcccHHHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQR-ALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 89 ~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~ 120 (349)
.|+.++|+..+.. .....+.+++++..+|.+|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 4555555555555 2233344455555555544
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=63.47 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 289 EEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
++++..++..+...|++++|.+.|-.+++++.-+.
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 34445556666677888888888888888876554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.2e-07 Score=46.29 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=16.6
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 99 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00071 Score=52.13 Aligned_cols=237 Identities=9% Similarity=0.074 Sum_probs=170.0
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChH-
Q psy9209 49 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTN- 127 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~- 127 (349)
+.....-..|+..-+.++.++|.+-.+|.....+...+. .+..+-++++.++++.+|++..+|...-.+....|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~--~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM--SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 334455678999999999999999888877666655543 57888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH------hhCHHHHHHHH
Q psy9209 128 AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK------QEKISEAMKCY 201 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~ 201 (349)
.-++..+.++..+.++..+|...-.+....+.++.-+.+..+.++.+--+-.+|...-.+... .-..+.-+.+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999877666666543222111 12244556778
Q ss_pred HHHHccccccHHHHHHHHHHHHh-cC--cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH------hCCHH
Q psy9209 202 NKSRAIGDADGKALFKLAKLYDK-LN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK------ANNLD 272 (349)
Q Consensus 202 ~~a~~~~~~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~ 272 (349)
.+.+...|++..+|..|.-++.. .| ....-.......+...|. ..+..+..+..+|.. .+.-+
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~--------~sP~lla~l~d~~~e~~l~~~~~~~~ 282 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPK--------RSPFLLAFLLDLYAEDALAYKSSAEE 282 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCC--------CChhHHHHHHHHHHHHHhhccccchH
Confidence 88899999999999988877775 44 233444444444422222 145556666666522 12222
Q ss_pred ---HHHHHHHHHH-cccCChHHHHHHH
Q psy9209 273 ---TAYKCAQKCL-QHEETAEEAKSLL 295 (349)
Q Consensus 273 ---~A~~~~~~a~-~~~~~~~~~~~~l 295 (349)
+|...++..- +.+|-....|...
T Consensus 283 ~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 283 LARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 4555555543 5666555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-07 Score=46.23 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=17.7
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHhCCHHHHH
Q psy9209 133 YRQAIEINNLDYRAWYGLGQTYEILRLPYYGL 164 (349)
Q Consensus 133 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 164 (349)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=59.82 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCCh----------HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------RPNDP----------RMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
..++..-|.-++..|+|.+|...|..++.. .|.++ ..+.+++.|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345566677777777777777777766543 34433 567889999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 206 AIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
...|.+..+++..|.++...=+..+|...|.++++++|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999999999999999999999999999887
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-05 Score=67.09 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=88.6
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 221 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
.+...|+...|+.++..++...|.. ......+|+.+....|-.-+|-.++.+++.+..+.+-..+.+|..+.
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~--------~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQ--------QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL 687 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhh--------hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH
Confidence 3456799999999999999988862 34567789999999999999999999999999888889999999999
Q ss_pred HcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 301 KRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 301 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
.+.+.+.|++.|+.|+.++|+++..-..+
T Consensus 688 ~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 99999999999999999999998765544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00017 Score=62.82 Aligned_cols=154 Identities=13% Similarity=-0.002 Sum_probs=118.8
Q ss_pred hcCChHHHHHHHHHHHHhCccc--HHH------HHHHHHHHH----HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLD--YRA------WYGLGQTYE----ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~--~~~------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
-.|+-+.++..+.++.+. ++- +-+ |+.....+. .....+.|.+.+.......|+..-.++..|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 358889999999998773 221 111 111111111 2446688999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHccccc----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRAIGDA----DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
..|+.++|++.|++++..... ..-.++.++.++..+++|++|...+.+..+.+.-. .....+..|.++
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS--------ka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS--------KAFYAYLAAACL 350 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH--------HHHHHHHHHHHH
Confidence 999999999999999864333 23467889999999999999999999999865431 566677789999
Q ss_pred HHhCCH-------HHHHHHHHHHHcc
Q psy9209 266 LKANNL-------DTAYKCAQKCLQH 284 (349)
Q Consensus 266 ~~~g~~-------~~A~~~~~~a~~~ 284 (349)
...|+. ++|..++.++-..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999 8888888887543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00024 Score=61.83 Aligned_cols=119 Identities=10% Similarity=-0.059 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHhhCHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND----PRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
...+.|.+.+....+..|+..-..+..|+++...|+.++|++.|++++.....- .-.++.++.++..+++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345566666666666666666666666666666666666666666655322221 1345566666666666666666
Q ss_pred HHHHHHcccccc-HHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcc
Q psy9209 200 CYNKSRAIGDAD-GKALFKLAKLYDKLNET-------EAAADLFMEFVSKL 242 (349)
Q Consensus 200 ~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~~ 242 (349)
++.+..+.+.-. ....+..|.++...|+. ++|...+.++-...
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 666666654332 22334455566666666 66666666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0024 Score=55.19 Aligned_cols=295 Identities=12% Similarity=0.027 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcch
Q psy9209 13 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS 92 (349)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (349)
+.+...|...+.+.|-.. -.|...|..-.+.|..+.+.+.|++++.--|-..+.|..+...... ..|+.
T Consensus 62 ~~~r~~y~~fL~kyPl~~---------gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n--~~~d~ 130 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY---------GYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN--NNGDP 130 (577)
T ss_pred HHHHHHHHHHHhhCccHH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--cCCCH
Confidence 344455555553333332 4688888888999999999999999999888777776555444333 34677
Q ss_pred HHHHHHHHHHHhhCccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----------------------------
Q psy9209 93 SQAVLYFQRALKLNPNY---LGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN----------------------------- 140 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 140 (349)
+.-...|++|......+ ...|-..-.....++++..-...|++.+++-
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~ 210 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDEL 210 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHH
Confidence 77667777776543221 1111111111122222222222333222210
Q ss_pred --------------------------------------------------------------------------------
Q psy9209 141 -------------------------------------------------------------------------------- 140 (349)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (349)
T Consensus 211 ~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvk 290 (577)
T KOG1258|consen 211 IQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVK 290 (577)
T ss_pred HHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccC
Confidence
Q ss_pred ---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-ccccHHHHH
Q psy9209 141 ---NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI-GDADGKALF 216 (349)
Q Consensus 141 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~ 216 (349)
+.+...|......-...|+++...-.|++++--.......|...+......|+.+-|...+..+.+. .|..+.+..
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 0111223333333334555555555555555444445556666666666666666666666666555 455566666
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH---HHHHHHHcccCCh---HH
Q psy9209 217 KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY---KCAQKCLQHEETA---EE 290 (349)
Q Consensus 217 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~a~~~~~~~---~~ 290 (349)
.-+.+....|++..|...+++.....|+ ...+-..-+....+.|+.+.+. .++.....-..+. ..
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg---------~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~ 441 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPG---------LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEK 441 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCc---------hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHH
Confidence 6666677777777777777777766665 5555555556666666666666 3332222211111 11
Q ss_pred HHHHHHHH-HHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 291 AKSLLRSI-AQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 291 ~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
.....+.. +.-.++.+.|...+.++++..|.+...+.
T Consensus 442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 442 LYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence 11222222 33455667777777777777777665443
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-06 Score=71.12 Aligned_cols=109 Identities=11% Similarity=-0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHH
Q psy9209 183 ALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262 (349)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (349)
..+.-.+.-+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+..+.++++.+|. ...+|+..|
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---------~~K~Y~rrg 79 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---------YIKAYVRRG 79 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch---------hhheeeecc
Confidence 34555566677888888888888888887777777777888888888888888888888777 677888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 263 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
.+....+++.+|+..|++.....|+.+.+...+..|..
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 88888888888888888888888888877777776654
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-06 Score=70.25 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=54.7
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
.+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|......+++.+|...|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCCChHHHHHHHH
Q psy9209 169 QAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~ 186 (349)
....+.|+++.+...+..
T Consensus 97 ~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 97 KVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HhhhcCcCcHHHHHHHHH
Confidence 555555555554444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-06 Score=42.95 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL 142 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 142 (349)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.8e-06 Score=42.66 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578889999999999999999999999888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00078 Score=53.04 Aligned_cols=153 Identities=16% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR-MLTALGEAF 188 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~ 188 (349)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-........ .+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3445666777888999999999999999999999999999999999999999998887764322222111 111111333
Q ss_pred HHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
.+.....+ ..-+++.+..+|++..+-+.++..+...|+.++|.+.+-..+..+... .+..+...+-.++...
T Consensus 214 ~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-------~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 214 EQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-------EDGEARKTLLELFEAF 285 (304)
T ss_pred HHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-------cCcHHHHHHHHHHHhc
Confidence 33333332 233455667799999999999999999999999999998888876541 1345555555555555
Q ss_pred CC
Q psy9209 269 NN 270 (349)
Q Consensus 269 g~ 270 (349)
|.
T Consensus 286 g~ 287 (304)
T COG3118 286 GP 287 (304)
T ss_pred CC
Confidence 53
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00055 Score=56.63 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh---cCcHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK---LNETEAAADLFME 237 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~ 237 (349)
+.-+.+|++|++.+|++...+..+-.+..+..+.++....+++++..+|+++..|...-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455666677777776666666666666666666666667777777777666666554443322 2245566666666
Q ss_pred HHhcccccCCC---------CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc
Q psy9209 238 FVSKLDTFAAP---------PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 238 ~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 285 (349)
++......... ........++..+.....+.|..+.|+..++-.++++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 65543221000 0111245667778888899999999999999999875
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00017 Score=54.86 Aligned_cols=105 Identities=14% Similarity=0.004 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------Ccc----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------NNL----------DYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
..++...|+-++..|+|.+|...|..|+.. .|. ....+.+.++|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345677889999999999999999998753 232 34567889999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
...|.+..+++..|.+....=+..+|..-|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999975444
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0031 Score=56.41 Aligned_cols=276 Identities=17% Similarity=0.097 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhh-----hhchHHHHHHHHH
Q psy9209 12 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA-----NNLDTAYKCAQKCLQH-----EETAEEAKSLLRS 81 (349)
Q Consensus 12 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~l~~ 81 (349)
...|...++.+...- .. .+...+|.++..- .|.+.|+.+++.+... .-..+.+ ...
T Consensus 228 ~~~a~~~~~~~a~~g-----~~------~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a---~~~ 293 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-----HS------EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPA---QYG 293 (552)
T ss_pred hhHHHHHHHHHHhhc-----ch------HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcc---ccH
Confidence 456777777766211 11 4567788877654 6899999999998762 0011222 223
Q ss_pred HHHhcCC----Cc-chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhCcccHHHHHHHHHH
Q psy9209 82 IAQKRQP----DE-SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK---NTNAAIQCYRQAIEINNLDYRAWYGLGQT 153 (349)
Q Consensus 82 ~~~~~~~----~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 153 (349)
++.+|.+ .. +...|+.++.++-... ++.+.+.+|.++..-. ++..|.++|..|... .+..+.+.++.+
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 3344443 22 7888999999988765 4577888999887765 578999999999875 467888899988
Q ss_pred HHH----hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hCHHHHHHHHHHHHccccccHH----HHHHHHHHHHh
Q psy9209 154 YEI----LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ-EKISEAMKCYNKSRAIGDADGK----ALFKLAKLYDK 224 (349)
Q Consensus 154 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~ 224 (349)
|.. ..+...|..++.++.+.. .+.+...++.++... ++++.+...+....+..-..+. ...........
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~ 447 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLF 447 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccc
Confidence 875 357889999999999887 455555555554433 7777777666655554222111 11111111111
Q ss_pred c----CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh----CCHHHHHHHHHHHHcccCChHHHHHHHH
Q psy9209 225 L----NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----NNLDTAYKCAQKCLQHEETAEEAKSLLR 296 (349)
Q Consensus 225 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 296 (349)
. .+...+...+.++.... ...+...+|.+|..- .+++.|...|.++.... ......+|
T Consensus 448 ~~~~~~~~~~~~~~~~~a~~~g-----------~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg 513 (552)
T KOG1550|consen 448 SRGVISTLERAFSLYSRAAAQG-----------NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLG 513 (552)
T ss_pred ccccccchhHHHHHHHHHHhcc-----------CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhh
Confidence 1 24455666666554432 577888888888775 36999999999988775 77888888
Q ss_pred HHHHHc-C--CCCCchhHHHHhhhcCCC
Q psy9209 297 SIAQKR-Q--PDESSSQPMECAVVLDPV 321 (349)
Q Consensus 297 ~~~~~~-~--~~~~A~~~~~~a~~~~p~ 321 (349)
.++..- | ....|..+|.++.+.+..
T Consensus 514 ~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 514 YMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred hHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 887632 1 146788888888776554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=41.73 Aligned_cols=32 Identities=28% Similarity=0.643 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL 142 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 142 (349)
.+++.+|.++...|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0054 Score=52.46 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 265 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
|..+++..-|...|+-.++..++.+..-......+...++-..+...|++++..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 345688888999999998888888888888888888889989999999998876
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00047 Score=54.22 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=107.9
Q ss_pred hcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhCCHHHH
Q psy9209 85 KRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A 163 (349)
.....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-...... ..........+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34557999999999999999999999999999999999999999998887643322211 11111112233333333332
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc--cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA--DGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
..+++.+..+|++..+.+.++..+...|+.++|.+.+-..+..+.. +..+...+-.++...|.-+.+...+++
T Consensus 223 -~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 223 -QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2345566779999999999999999999999999999888877543 455666666666666654444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.9e-06 Score=42.04 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0037 Score=55.95 Aligned_cols=250 Identities=17% Similarity=0.161 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHH--HhcCCCcchHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHhcC---
Q psy9209 55 LDTAYKCAQKCLQHEETAEEAKSLLRSIA--QKRQPDESSSQAVLYFQRALKL-----NPNYLGVWTLLGHEYMEMK--- 124 (349)
Q Consensus 55 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~--- 124 (349)
...|..+++.+....- ..+...++.+. ..+....|.+.|+.+++.+... ....+.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~--~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 4678888887765532 23322233221 1133457999999999998761 1114557788999998843
Q ss_pred --ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----hhCHH
Q psy9209 125 --NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR---LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK----QEKIS 195 (349)
Q Consensus 125 --~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 195 (349)
++..|+.+|.++.+.. ++.+.+.+|.++..-. ++..|.++|..+... .+..+.+.++.+|.. ..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 6788999999998764 5678888999888765 578999999999765 567888889988864 35789
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh----CC
Q psy9209 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKL-NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----NN 270 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 270 (349)
.|..++.++.+.. ++.+...++..+... +.+..+...+.......-.. .......+.......... .+
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~-----~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV-----AQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH-----HhhHHHHHHHhccccccccccccc
Confidence 9999999999887 455555555554433 77776666555544432210 000111111111111111 25
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHc----CCCCCchhHHHHhhhcC
Q psy9209 271 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR----QPDESSSQPMECAVVLD 319 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~ 319 (349)
...+...+.++... .+..+...++.++..- .+++.|...|.++....
T Consensus 455 ~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 55666666665443 5677778888887754 24667888888876655
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0019 Score=47.59 Aligned_cols=115 Identities=11% Similarity=0.056 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCh---HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 164 LYYYKQAHMVRPNDP---RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
....++....+|.+. -....++..+...|++++|+..++.++....+. +-+-.+++.+...+|++++|...+..
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 333444444444433 234456777788888888888888887654332 34556788888888888888887765
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
.....- .+..-...|+++...|+-++|+..|+++++..++.
T Consensus 152 ~~~~~w----------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 152 IKEESW----------AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cccccH----------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 443221 24445567888888888888888888888876443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0092 Score=54.23 Aligned_cols=230 Identities=14% Similarity=0.008 Sum_probs=135.9
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcc---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-----HHHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPN---------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-----YRAWYG 149 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~ 149 (349)
+......++.+|..+..++...-+. .....-..|.+....|++++|++..+.++..-|.+ ..+...
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3344457788887777776554332 12344566788888999999999999998876654 456677
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHhhCH--HHHHHHHHHHHc----cccccHHHHHH
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPND------PRMLTALGEAFEKQEKI--SEAMKCYNKSRA----IGDADGKALFK 217 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~----~~~~~~~~~~~ 217 (349)
+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+. .+....+...-. ..|.+......
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 8888888999999999888887763221 12334557777888832 333333322221 23333333333
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh-----HH--
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA-----EE-- 290 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~-- 290 (349)
.+.++...-+++.+.......++..... ........-..+.|+.+....|+.++|...+......-.+. ..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 3333333333565555555555443220 00111122233589999999999999999998886542211 11
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 291 AKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 291 ~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
+..........+|+...+.....+.
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1112223344577877777776663
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0038 Score=53.31 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=145.2
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhC---C
Q psy9209 98 YFQRALKLNPNYLGVWTLLGHEYMEMKN--------------TNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEILR---L 159 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~---~ 159 (349)
.+++++..-+-.+++|+..+..+...++ -+++..+|+++++.. ..+...++.++..-...- +
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 4556666666667777665555554444 567888888887742 223344444444333322 3
Q ss_pred HHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcCcHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDP-RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLNETEAAADLFME 237 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~ 237 (349)
++....++++++.+...++ -++..+-..-.+..-...|...|.++-+.......++..-|.+ |...++..-|.+.|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 6677778888887654444 3556666666666668888889988877644333444433333 5677889999999999
Q ss_pred HHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cC-ChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 238 FVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EE-TAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
.+...++ .+..-......+...++-..|...|++++.. .+ ....+|..+-.....-|+....++.-++
T Consensus 427 GLkkf~d---------~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 427 GLKKFGD---------SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhcCC---------ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9998888 6777777788888899999999999999876 33 3456777777777778888777777666
Q ss_pred hhhcCC
Q psy9209 315 AVVLDP 320 (349)
Q Consensus 315 a~~~~p 320 (349)
-....|
T Consensus 498 ~~~af~ 503 (656)
T KOG1914|consen 498 RFTAFP 503 (656)
T ss_pred HHHhcc
Confidence 655555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00041 Score=50.27 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 455667788888899999999999999999988889999999999999999999888887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00032 Score=50.88 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455666666777777777777777777777777777777777777777777777766654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00061 Score=58.50 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=88.8
Q ss_pred HhhCHHHHHHHHHHHHccccccHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGK-ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
..|+...|+.++..++...|.... ...+++.+....|-.-.|-..+.+++.+... .+..++.+|..+...
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---------epl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---------EPLTFLSLGNAYLAL 689 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---------CchHHHhcchhHHHH
Confidence 568999999999999999886543 5678999999999999999999999998866 688899999999999
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
.+.+.|++.|+.+++.+|+++.....|-.+..
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999998877766554443
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0032 Score=57.90 Aligned_cols=58 Identities=16% Similarity=0.019 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 213 KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+-+-.+...|...|-+++-+..++.++.+... +...+..||.+|.+- ++++-.++++-
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 33445555666667777777777666666554 455566666655543 34444444443
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0046 Score=47.85 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH-HHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM-KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY-YGLYYY 167 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~ 167 (349)
..-..|+..-..++.++|.+..+|...-.++..+ .+..+-++++.+.++-+|++..+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 4556677788888999999999997777776655 45778899999999999999999999999999999888 889999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh-cC-----cHHHHHHHHHHHHhc
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK-LN-----ETEAAADLFMEFVSK 241 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~~~ 241 (349)
+.++..+..+--+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+..
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877666666543222111 11 234445677788888
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHH-hC--CHHHHHHHHHHHH-cccCChHHHHHHHHHHH
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLK-AN--NLDTAYKCAQKCL-QHEETAEEAKSLLRSIA 299 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~ 299 (349)
.|. +..+|..|.-++.. .| ...+-.......+ +.....+..+..+..++
T Consensus 217 vP~---------NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 217 VPN---------NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred CCC---------CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 888 78899999888876 55 2334444444444 33344555555555555
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.017 Score=53.51 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+.+|..+|......|...+|++.|-++ ++|..+.....+..+.|.|++-+.++..+.+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 556666666666666666666666554 45555666666666666666666666555443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0023 Score=53.02 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH---hhCHHHHHHHHHH
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK---QEKISEAMKCYNK 203 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~ 203 (349)
+.-+.+|++|++.+|++...+..+-....+..+.++..+-+++++..+|+++..|..+-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455666777777776666666666666666666666666777777777766666544333322 1234455555555
Q ss_pred HHcc-------c-----------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 204 SRAI-------G-----------DADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 204 a~~~-------~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
++.. . .....++..+.....+.|..+.|+..++-.++.+
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5443 0 0113455667777888899999999999988875
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00019 Score=57.09 Aligned_cols=101 Identities=16% Similarity=0.041 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
+.-+-.-|.-|++.++|..|+..|.++++..-.++ ..|.+.+-+....|+|..|+.-..+++..+|.+..+++.=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 45566778888888899999999999988755544 56778888888899999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.++..+.++.+|..+.+..+.++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999988888776554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0087 Score=48.58 Aligned_cols=232 Identities=11% Similarity=0.029 Sum_probs=139.3
Q ss_pred HHhhCcHHHHHHHHHHHHHhccccCCCCC-cchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhhc-------hH---
Q psy9209 6 YDKLNETEAAADLFMEFVSKLDTFAAPPD-KTCGFFAFKYLANHHLKAN-NLDTAYKCAQKCLQHEET-------AE--- 73 (349)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~-------~~--- 73 (349)
-.++|+.+.|...+.++-.... ..+|+ .......++..|......+ +++.|..+++++.+.-.. .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~--~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN--SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 4578999999999998864332 22333 2334467899999999999 999999999999876211 11
Q ss_pred -HHHHHHHHHHHhcCCCcch---HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH
Q psy9209 74 -EAKSLLRSIAQKRQPDESS---SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149 (349)
Q Consensus 74 -~~~~~l~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 149 (349)
.-...+..++.++...+.+ ++|....+.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+-....+..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~ 160 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence 1233455566666655554 455666666666678878877666666666899999999999999864311111111
Q ss_pred HHHHH--HHhCCHHHHHHHHHHHHhc--CCCChHHHHHHH---HHHHHhh--C------HHHHHHHHHHHHcc--ccccH
Q psy9209 150 LGQTY--EILRLPYYGLYYYKQAHMV--RPNDPRMLTALG---EAFEKQE--K------ISEAMKCYNKSRAI--GDADG 212 (349)
Q Consensus 150 l~~~~--~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~---~~~~~~~--~------~~~A~~~~~~a~~~--~~~~~ 212 (349)
....+ ........|...+...+.. .|.... +.... .++...+ + .+....++....+. .|-.+
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 11111 1223445677777666653 222211 32222 2222221 1 22333333322211 22221
Q ss_pred -------HHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 213 -------KALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 213 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
..+.+.|...++.++|++|..+|+-++.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2345668889999999999999997763
|
It is also involved in sporulation []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0017 Score=47.86 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhCcccH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 94 QAVLYFQRALKLNPNYL---GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 94 ~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
+.....++....+|... .+-..++..+...|++++|+..++.++....+. .-+-.+|+.+....|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444445555554432 234677888999999999999999988643322 345678999999999999999888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
....... -.+......|.++...|+-++|+..|+++++..++
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 7653211 01234556799999999999999999999988643
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.013 Score=52.37 Aligned_cols=143 Identities=19% Similarity=0.248 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH------HHh----Cccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQA------IEI----NNLD-YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a------~~~----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
|-.-|.++.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-++- ..
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~ 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CL 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hH
Confidence 344566666777777777777653 332 2222 1222344666667777777777765542 11
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (349)
..-...-....+|.+|+..++..-.... ....|-.++.-|...|+++-|.+.|.++-. ...-
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----------------~~da 797 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEADL-----------------FKDA 797 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcch-----------------hHHH
Confidence 2222333344556666655554332211 223344556666677777777666654422 1112
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q psy9209 262 ANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a 281 (349)
...|-+.|+|++|.+.-++.
T Consensus 798 i~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHHhccccHHHHHHHHHHh
Confidence 34455566666665555444
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.015 Score=50.54 Aligned_cols=189 Identities=8% Similarity=-0.047 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RPNDPRMLTALGEAFE 189 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 189 (349)
..|......-...|+++.....|++++--.......|...+......|+.+-|-..+.++.++ .|..+.+....+.+-.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 445666666778899999999999999877778899999999999999999999888888876 5667778888888888
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cccccCCCCCCcchHHHHHHHHHHHH-H
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS-KLDTFAAPPDKTCGFFAFKYLANHHL-K 267 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 267 (349)
..|++..|...+++..+..|+...+-..-+....+.|+.+.+.. +..... ..+. ..........+...++... -
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~---~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEG---KENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccc---ccCcchhHHHHHHHHHHHHHH
Confidence 99999999999999998889888887777888888999888874 222222 2222 1222234555555665543 4
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcC
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 303 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 303 (349)
.++.+.|...+.++.+..|.+...+..+..+....+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 579999999999999999998888877776666554
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.8e-05 Score=62.99 Aligned_cols=92 Identities=13% Similarity=-0.071 Sum_probs=75.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
-....|.+++|++.|..++.++|.....+...+.++.+++++..|+.-+..+++++|+...-+-..+.....+|++++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34456778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcccc
Q psy9209 233 DLFMEFVSKLDT 244 (349)
Q Consensus 233 ~~~~~~~~~~~~ 244 (349)
..+..+.+++-+
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 888888876543
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.4e-05 Score=62.28 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=73.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISE 196 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (349)
+.-.+..|.+++|++.|..+++++|.....+...+.++..++++..|+.-+..++.++|+...-+-..|.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33445667788888888888888888888888888888888888888888888888888887777777777888888888
Q ss_pred HHHHHHHHHcccc
Q psy9209 197 AMKCYNKSRAIGD 209 (349)
Q Consensus 197 A~~~~~~a~~~~~ 209 (349)
|...+..+.+++-
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 8888888877743
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.012 Score=47.72 Aligned_cols=230 Identities=13% Similarity=0.049 Sum_probs=135.4
Q ss_pred HHhcCCHHHHHHHHHHHhhhh----hchHH-HHHHHHHHHHhcCCCc-chHHHHHHHHHHHhh----Cc------c----
Q psy9209 49 HLKANNLDTAYKCAQKCLQHE----ETAEE-AKSLLRSIAQKRQPDE-SSSQAVLYFQRALKL----NP------N---- 108 (349)
Q Consensus 49 ~~~~~~~~~A~~~~~~~l~~~----~~~~~-~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~----~~------~---- 108 (349)
....|+++.|..++.++-... |+... ....+..+|......+ +++.|..+++++.++ .+ +
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999987543 33322 2334566677777788 999999999999887 21 1
Q ss_pred cHHHHHHHHHHHHhcCChHH---HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNA---AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
...++..++.+|...+.++. |....+.+-...|+.+.++...-.+..+.++.+++.+.+.+++...+-....+....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 12356788899988887654 445555555556777777755555556689999999999999886542222222222
Q ss_pred HHH--HHhhCHHHHHHHHHHHHcc--ccccHHHHHHHH---HHHHhcC--cHHHH--HHHHHHHHhc---ccccCCCCCC
Q psy9209 186 EAF--EKQEKISEAMKCYNKSRAI--GDADGKALFKLA---KLYDKLN--ETEAA--ADLFMEFVSK---LDTFAAPPDK 251 (349)
Q Consensus 186 ~~~--~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~---~~~~~~~--~~~~A--~~~~~~~~~~---~~~~~~~~~~ 251 (349)
..+ ........|..++...+.. .|.... +.... .++...+ +.... ++.....+.. ... ....
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~---~~ls 238 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG---KQLS 238 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc---CCCC
Confidence 222 1223445677777666654 332221 22221 2222222 11122 2333222221 111 0011
Q ss_pred c----chHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 252 T----CGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 252 ~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
. .....+.+.|...++.++|++|..+|+-++
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1 122345566888899999999999998765
|
It is also involved in sporulation []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.014 Score=48.01 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=130.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH-HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh---
Q psy9209 47 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI-AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME--- 122 (349)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--- 122 (349)
......+++..+...+..+-.... ......++.+ ........+..+|..+|+.+. ....+.+.+.+|.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~~--~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELGD--AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcCC--hHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence 334466788888888888775221 1222222222 122233467899999999544 45567888999999987
Q ss_pred -cCChHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhC-------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH---
Q psy9209 123 -MKNTNAAIQCYRQAIEINNLD-YRAWYGLGQTYEILR-------LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK--- 190 (349)
Q Consensus 123 -~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 190 (349)
..++.+|..+|+++.+..... ..+.+.++.+|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 558999999999999874333 344788888877642 2347889999887765 77888999988865
Q ss_pred -hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC---------------cHHHHHHHHHHHHhcc
Q psy9209 191 -QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN---------------ETEAAADLFMEFVSKL 242 (349)
Q Consensus 191 -~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---------------~~~~A~~~~~~~~~~~ 242 (349)
..++.+|..+|.++-+... ....+.++ ++...| +...|...+..+....
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 3488999999999998876 78888888 666555 5555555555555443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0043 Score=52.03 Aligned_cols=142 Identities=16% Similarity=0.107 Sum_probs=107.4
Q ss_pred HhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------------C------------ccc---HHHHHHHHHH
Q psy9209 103 LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------------N------------NLD---YRAWYGLGQT 153 (349)
Q Consensus 103 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------------~------------~~~---~~~~~~l~~~ 153 (349)
+..+|-+.+++..++.++..+|+.+.|.+++++|+-. + +.| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4568889999999999999999999999888888542 1 112 2345566778
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC-ChHH-HHHHHHHHHHhhCHHHHHHHHHHHHcccc-----ccHHHHHHHHHHHHhcC
Q psy9209 154 YEILRLPYYGLYYYKQAHMVRPN-DPRM-LTALGEAFEKQEKISEAMKCYNKSRAIGD-----ADGKALFKLAKLYDKLN 226 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~ 226 (349)
+.+.|-+..|+++.+-.+.++|. ||-. .+.+-....+.++++--+..++....... ..|..-+..+.++...+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 88999999999999999999999 7744 44444555677888777777776555211 13456677788888888
Q ss_pred cH---------------HHHHHHHHHHHhcccc
Q psy9209 227 ET---------------EAAADLFMEFVSKLDT 244 (349)
Q Consensus 227 ~~---------------~~A~~~~~~~~~~~~~ 244 (349)
+. +.|...+.+++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 87 8999999999998775
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.9e-05 Score=38.75 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.+|+.+|.++...|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56788889999999999999999998888874
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.035 Score=50.69 Aligned_cols=301 Identities=13% Similarity=-0.022 Sum_probs=180.8
Q ss_pred hhhHH-hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchH-HHHHHHH
Q psy9209 3 NKLYD-KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE-EAKSLLR 80 (349)
Q Consensus 3 a~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~ 80 (349)
|.++. ...+++.|...+++++..... ..-....+.+.+.++.++.+.+... |...+++.++...+.. ..|....
T Consensus 66 a~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 66 ASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 34444 678999999999999854433 1112223456777889988888777 9999999987654411 1122222
Q ss_pred HHH--HhcCCCcchHHHHHHHHHHHhhC--cccHHH----HHHHHHHHHhcCChHHHHHHHHHHHHhCc----------c
Q psy9209 81 SIA--QKRQPDESSSQAVLYFQRALKLN--PNYLGV----WTLLGHEYMEMKNTNAAIQCYRQAIEINN----------L 142 (349)
Q Consensus 81 ~~~--~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~----~~~la~~~~~~~~~~~A~~~~~~a~~~~~----------~ 142 (349)
.+. ......+++..|++.++...... +.++.+ ....+.+....+..+++++..+++..... .
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 211 11212279999999999988765 344333 24456677788888889998888854321 1
Q ss_pred cHHHHHHHHH--HHHHhCCHHHHHHHHHHH---Hhc---CC-------C---------------C-h-------------
Q psy9209 143 DYRAWYGLGQ--TYEILRLPYYGLYYYKQA---HMV---RP-------N---------------D-P------------- 178 (349)
Q Consensus 143 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~---~~~---~~-------~---------------~-~------------- 178 (349)
...+|..+-. ++...|++..+...+++. ++. .+ + . +
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~ 301 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYA 301 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHH
Confidence 2344554444 344567766665554433 221 11 0 0 1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc----------c----------------HHHHHHHHHHHHhcCcHHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA----------D----------------GKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~----------------~~~~~~l~~~~~~~~~~~~A~ 232 (349)
-++..-|......+..++|.++++++++.-.+ . ....+.++.+..-.+++..|.
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~ 381 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT 381 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 12233355556667776888888877754110 0 123345667777889999999
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHcccCChH---HHHHHHHHHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ--------KCLQHEETAE---EAKSLLRSIAQK 301 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~a~~~~~~~~---~~~~~l~~~~~~ 301 (349)
.....+.......+........+..++..|..+...|+.+.|..+|. .+....+.+. -+..++..++..
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~ 461 (608)
T PF10345_consen 382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY 461 (608)
T ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh
Confidence 99888776543210011122357888999999999999999999998 3334444332 222345555555
Q ss_pred cCCCCC
Q psy9209 302 RQPDES 307 (349)
Q Consensus 302 ~~~~~~ 307 (349)
.+....
T Consensus 462 ~~~~~~ 467 (608)
T PF10345_consen 462 ESSRDD 467 (608)
T ss_pred hcccch
Confidence 554433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00085 Score=53.53 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL----DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
..+-.-|+-|+..++|..|+..|.+.++..-. +...|.+.+-+....|+|..|+.-..+++.++|.+..+++.-+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34455677777777788888888877775322 24556677777777788888888888888888888777777788
Q ss_pred HHHHhhCHHHHHHHHHHHHcccc
Q psy9209 187 AFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 187 ~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
|+..+.++.+|..+++..+.++.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888887777777777766543
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.038 Score=55.78 Aligned_cols=296 Identities=8% Similarity=-0.048 Sum_probs=169.0
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|++-.+.|.|..|+..+++-- ..+.........++.+-.+|...++++...-....- ..+|.-.. .
T Consensus 1390 a~aSfrc~~y~RalmylEs~~------~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~sl~~-------q 1455 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHR------STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPSLYQ-------Q 1455 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCccHHH-------H
Confidence 344566778888888876631 011111111134455555888888887766655531 12222111 1
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHH-HHHHhCCHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ-TYEILRLPY 161 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~-~~~~~~~~~ 161 (349)
.......|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++. +-++.++++
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchh
Confidence 1223335899999999999999999977777777777788888888888777666655555555555443 346666666
Q ss_pred HHHHHHH--------------HHHhcCCCChHHH-HHHHHHHH----------HhhCHHHHHHHHHHHH-----------
Q psy9209 162 YGLYYYK--------------QAHMVRPNDPRML-TALGEAFE----------KQEKISEAMKCYNKSR----------- 205 (349)
Q Consensus 162 ~A~~~~~--------------~~~~~~~~~~~~~-~~l~~~~~----------~~~~~~~A~~~~~~a~----------- 205 (349)
.-..+.. ..+.....+.... -.+...-. ..|.|..+.++.-+..
T Consensus 1536 ~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1536 LLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred hhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544432 0011111111000 00000000 0011112222211111
Q ss_pred -c-cccc-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 206 -A-IGDA-----DGKALFKLAKLYDKLNETEAAADLFMEFVSK---LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 206 -~-~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
. ..++ +.+-|.+....-....+..+-+-.+++++-. .|+ ......+.|...|++....|+++.|.
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~-----~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSN-----LKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccc-----ccchhHHHHHHHHHHHHhcccHHHHH
Confidence 0 0111 1222333322222222244444455554432 222 34457999999999999999999999
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 276 KCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
.++-+|.+.. -+.+....|......|+...|+..+++.++..
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999998876 56778889999999999999999999999654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0093 Score=49.98 Aligned_cols=212 Identities=12% Similarity=0.042 Sum_probs=132.1
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Q psy9209 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV---- 173 (349)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 173 (349)
.+++++..-|-.+++|+.........++-+.|+...+++....|. ....++.+|....+.+....+|+++.+.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 456666666777778888777788888888888888888776665 5566777777777766666666655432
Q ss_pred --------------CCC-Ch-----------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcC
Q psy9209 174 --------------RPN-DP-----------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLN 226 (349)
Q Consensus 174 --------------~~~-~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~ 226 (349)
+|. .+ -+++.+-..-.+..-.+.|...|-++-+..-....++..-|.+ +...|
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence 111 01 1222233333344446677777777766542333344333333 55678
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh--HHHHHHHHHHHHHcCC
Q psy9209 227 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRSIAQKRQP 304 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~ 304 (349)
++.-|...|+-.+...|+ .+..-...-..+...++-+.|...|++++..-... ...+..+-.....-|+
T Consensus 447 d~~ta~~ifelGl~~f~d---------~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 447 DRATAYNIFELGLLKFPD---------STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred CcchHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence 888888999888888887 44444555566677788888888888776543222 3444445555555666
Q ss_pred CCCchhHHHHhhhcCCC
Q psy9209 305 DESSSQPMECAVVLDPV 321 (349)
Q Consensus 305 ~~~A~~~~~~a~~~~p~ 321 (349)
...+...=++..++.|+
T Consensus 518 lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 518 LNNVYSLEERFRELVPQ 534 (660)
T ss_pred hHHHHhHHHHHHHHcCc
Confidence 66665555555555554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.041 Score=50.29 Aligned_cols=237 Identities=14% Similarity=-0.008 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc--hH---H---HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc---
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEET--AE---E---AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY--- 109 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~---~---~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 109 (349)
.....++......++.+|...+.++...-|. .. . .+..+. +.+....|++++|++..+.++..-|.+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~--a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALR--AQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 4556677788889999999998887754332 11 0 122222 233334699999999999999887664
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc----c--HHHHHHHHHHHHHhCCH--HHHHHHHHHHH----hcCC
Q psy9209 110 --LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL----D--YRAWYGLGQTYEILRLP--YYGLYYYKQAH----MVRP 175 (349)
Q Consensus 110 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~--~~~~~~l~~~~~~~~~~--~~A~~~~~~~~----~~~~ 175 (349)
..+...+|.+..-.|++++|..+...+.+.... . ..+....+.++..+|+. .+....+...- ...|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345688899999999999999999998886332 2 23334557778888843 33333333222 2233
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc----cccc--HH-HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCC
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAI----GDAD--GK-ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAP 248 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~--~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 248 (349)
.........+.++...-+++.+.......++. .|.. .. +.+.++.+....|+.++|...+.++.....+. .
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~--~ 652 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG--Q 652 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--C
Confidence 33334444444444444466666666665554 2222 22 23588999999999999999999888765541 0
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 249 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
........++.-.......+|+...|.....+.
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 011112222333334445678999888887774
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=37.92 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 71 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 71 (349)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46899999999999999999999999999885
|
... |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.016 Score=45.27 Aligned_cols=217 Identities=17% Similarity=0.118 Sum_probs=133.9
Q ss_pred hcCCHHHHHHHHHHHhhhhhchHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhC-----cccHH-HHHHHHHHHHhc
Q psy9209 51 KANNLDTAYKCAQKCLQHEETAEE-AKSLLRSIAQKRQPDESSSQAVLYFQRALKLN-----PNYLG-VWTLLGHEYMEM 123 (349)
Q Consensus 51 ~~~~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~la~~~~~~ 123 (349)
...+.++|+..|++++++.+...+ .+..+-.+....++.|++++-+..|.+.+..- .+..+ ....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345789999999999998876543 34456666677888899999999998877531 11111 112222222233
Q ss_pred CChHHHHHHHHHHHHh--CcccHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------ChHHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEI--NNLDYRAW----YGLGQTYEILRLPYYGLYYYKQAHMVRPN------------DPRMLTALG 185 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~ 185 (349)
.+.+--.+.|+..+.. +..+...| ..+|.+|+..++|.+-.+++++.-..... -.+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 4444444555554442 23334444 36899999999988877777766543211 124555556
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccc--cHHHHHH----HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDA--DGKALFK----LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
.+|..+++-.+-...|++++.+... +|.+.-. =|..+.+.|++++|-..|-++++.....| ........-|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG--spRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG--SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC--CcchhHHHHHH
Confidence 7788888888888899999887432 3333322 25567888999999998888887655431 11122233344
Q ss_pred HHHHHHHHhC
Q psy9209 260 YLANHHLKAN 269 (349)
Q Consensus 260 ~l~~~~~~~g 269 (349)
-|+..+.+.|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
Confidence 4555565554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.05 Score=49.71 Aligned_cols=295 Identities=12% Similarity=0.012 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhh--hchHHH-HHHHHHHHHhcCC
Q psy9209 13 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL-KANNLDTAYKCAQKCLQHE--ETAEEA-KSLLRSIAQKRQP 88 (349)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~--~~~~~~-~~~l~~~~~~~~~ 88 (349)
..|+.+++-+++ ...+.+..-+.+.+.+|.+++ ...+++.|..++++++.+. ++..+. +..-..++..+.+
T Consensus 38 ~~ai~CL~~~~~-----~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 38 ATAIKCLEAVLK-----QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 456777766663 122223333478999999998 7789999999999998665 333322 2222333555555
Q ss_pred CcchHHHHHHHHHHHhhCcc---cHHHH-HHH--HHHHHhcCChHHHHHHHHHHHHhC--cccHHH----HHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPN---YLGVW-TLL--GHEYMEMKNTNAAIQCYRQAIEIN--NLDYRA----WYGLGQTYEI 156 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~---~~~~~-~~l--a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~----~~~l~~~~~~ 156 (349)
.+... |...+++.++.... ....| +.+ .......+++..|++.++...... +.++.+ ....+.+...
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 55555 99999998876544 22222 222 333333489999999999998864 233332 2234556667
Q ss_pred hCCHHHHHHHHHHHHhcC------CC----ChHHHHHHHH--HHHHhhCHHHHHHHHHHHHc---c---cc---c---c-
Q psy9209 157 LRLPYYGLYYYKQAHMVR------PN----DPRMLTALGE--AFEKQEKISEAMKCYNKSRA---I---GD---A---D- 211 (349)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~------~~----~~~~~~~l~~--~~~~~~~~~~A~~~~~~a~~---~---~~---~---~- 211 (349)
.+..+++++..+++.... |. ...++..+-. +....|+++.+...+++.-. . .+ . +
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~ 271 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDG 271 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCe
Confidence 777888888888774421 11 1234443333 34456776666655444321 1 11 0 0
Q ss_pred -----------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC-----CCCCCc-----
Q psy9209 212 -----------------------------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA-----APPDKT----- 252 (349)
Q Consensus 212 -----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~----- 252 (349)
.-++..-|......+..+.|.+++.++++.-.... ....+.
T Consensus 272 ~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~ 351 (608)
T PF10345_consen 272 SIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASE 351 (608)
T ss_pred eEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHH
Confidence 11223335556667777788888888877543311 000000
Q ss_pred -------chHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc---C------ChHHHHHHHHHHHHHcCCCCCchhHHH
Q psy9209 253 -------CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE---E------TAEEAKSLLRSIAQKRQPDESSSQPME 313 (349)
Q Consensus 253 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 313 (349)
-.....+..+.+..-.|++..|....+.+.... | -.+..++..|..+...|+.+.|...|.
T Consensus 352 ~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 352 RIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 012344556777778899999999988876542 2 246778889999999999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0068 Score=50.88 Aligned_cols=146 Identities=10% Similarity=-0.029 Sum_probs=106.1
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------------C------------CCCh---HHHHHHHHH
Q psy9209 137 IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------------R------------PNDP---RMLTALGEA 187 (349)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~------------~~~~---~~~~~l~~~ 187 (349)
+..+|-+.+++..++.++..+|+...|.+.+++++-. + +.|. .+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 5668999999999999999999999999998888643 1 1121 345667788
Q ss_pred HHHhhCHHHHHHHHHHHHccccc-cHHH-HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDA-DGKA-LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
+.+.|-+..|.++.+-.+.++|. ++.. .+.+-....+.++++--+..++......... -....+..-+..+.++
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~----~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN----WLSLLPNFAFSIALAY 188 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh----hhhhCccHHHHHHHHH
Confidence 88999999999999999999998 6654 3444445567788877777777655421110 0001345667778888
Q ss_pred HHhCCH---------------HHHHHHHHHHHcccC
Q psy9209 266 LKANNL---------------DTAYKCAQKCLQHEE 286 (349)
Q Consensus 266 ~~~g~~---------------~~A~~~~~~a~~~~~ 286 (349)
...++. ++|...+.+|+...|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 888887 889888888876544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.041 Score=45.17 Aligned_cols=181 Identities=20% Similarity=0.199 Sum_probs=134.5
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc----CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCC
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM----KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRL 159 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~ 159 (349)
..+++..+...+.++-.. .++.....++.+|..- .+..+|...|..+.+ ..++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence 457888999998887763 2336777888887653 467889999996554 5567888999999987 458
Q ss_pred HHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHhh-------CHHHHHHHHHHHHccccccHHHHHHHHHHHHh----cCc
Q psy9209 160 PYYGLYYYKQAHMVRPND-PRMLTALGEAFEKQE-------KISEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNE 227 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~ 227 (349)
..+|..+|.++.+..-.. ......+|.+|..-. +...|...|.++-... ++.+...+|.+|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 999999999999875443 344778888876642 2347888888887766 67888889988755 347
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHHcccC
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN---------------NLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~a~~~~~ 286 (349)
+.+|..+|.++.+.. +....+.++ ++...| +...|...+.++....+
T Consensus 207 ~~~A~~wy~~Aa~~g-----------~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQG-----------DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCC-----------CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 899999999998764 257777888 666666 66677777777665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=37.11 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEE 70 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 70 (349)
+|..+|.+|...|++++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999775543
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.024 Score=44.32 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=118.9
Q ss_pred CcchHHHHHHHHHHHhhCcccH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-----c-HHHHHHHHHHHHHhC
Q psy9209 89 DESSSQAVLYFQRALKLNPNYL----GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-----D-YRAWYGLGQTYEILR 158 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~-~~~~~~l~~~~~~~~ 158 (349)
..++++|+..|++++++.+... .++-.+..+++.+|++++-.+.|.+.+..-.. . ......+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3589999999999999988754 35667788999999999999999988764111 1 111111111111222
Q ss_pred CHHHHHHHHHHHHhc--CCCChHHH----HHHHHHHHHhhCHHHHHHHHHHHHccc---cc---------cHHHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHMV--RPNDPRML----TALGEAFEKQEKISEAMKCYNKSRAIG---DA---------DGKALFKLAK 220 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~---------~~~~~~~l~~ 220 (349)
+.+--...|+..+.. +..+...| ..+|.+|+..+.|.+-...+++.-... .. -.+++..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 333333333333321 12233333 468999999998888777766654431 11 1344555566
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 221 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.|..+++-..-...|++++.+... +....-.....-.=|..+.+.|+|++|..-|=.+.+.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSA---IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSA---IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhcc---CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 788888888888899999887554 1111112222233366788889999998777777653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=37.08 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
+..+|.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777777777777777775543
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.039 Score=49.05 Aligned_cols=119 Identities=16% Similarity=0.055 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH------H---HHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA------K---SLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL 110 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------~---~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (349)
..|..++......-.++.|...|-+.-.. |.-... + ...+.+...| |++++|.+.|-.+-..+
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~---g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFY---GEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhh---cchhHhhhhhhccchhh----
Confidence 68999999999888888888877665321 111000 0 0012222223 88888888775432111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEIN--NLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.-..++...|+|-...++++..-.-+ .....++.++|..+..+..|++|.++|...
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11223445555554444443321111 112345666666666666666666666554
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.2 Score=51.05 Aligned_cols=107 Identities=11% Similarity=-0.018 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-CC-
Q psy9209 210 ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ET- 287 (349)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~- 287 (349)
...+.|...|++....|+++.|...+-++.+.. .+.++...|..+...|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~ 1736 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR-----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDL 1736 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccc
Confidence 357889999999999999999999888887654 36888899999999999999999999998653 22
Q ss_pred ---------h------HHHHHHHHHHHHHcCCCC--CchhHHHHhhhcCCCCCCccc
Q psy9209 288 ---------A------EEAKSLLRSIAQKRQPDE--SSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 288 ---------~------~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~ 327 (349)
. ..+...++......|+.+ .-+.+|..+.++.|....-+.
T Consensus 1737 ~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1737 HTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred cCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 1 123344445555556543 557788889999986555433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00046 Score=35.23 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=9.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 149 GLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 149 ~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
.+|.++...|++++|+..|++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=37.12 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
+.++.+|..+.+.|+|++|..+.+.++++.|++..+......+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 467889999999999999999999999999999998877766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0089 Score=43.00 Aligned_cols=83 Identities=13% Similarity=-0.022 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
.+..+..+-...++.+++...+..+--+.|..+..-..-|.++...|+|.+|+..++.+....|..+...-.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444455555666667766666666667777777777777777777777777777776666666666666666666666
Q ss_pred CcH
Q psy9209 226 NET 228 (349)
Q Consensus 226 ~~~ 228 (349)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00047 Score=35.19 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
++++.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35678888888888888888888888887775
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0089 Score=39.86 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+++++.++..+.|..+..++.+|.-+.....|+++....++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3566777777777777666666666555555566666666665543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0087 Score=39.91 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.+++++.++..+.|..+..++.+|.-+-...-|+++..-.++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3566777777777777777777776666666667777666666654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.011 Score=42.56 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 213 KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
..+..+..+-...++.+++...+...--+.|. .+..-..-|.++...|++.+|+..++.+....|..+.+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~---------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPE---------FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 34555666667778888888888888788887 788888888888889999999999988888888888888
Q ss_pred HHHHHHHHHcCCCC
Q psy9209 293 SLLRSIAQKRQPDE 306 (349)
Q Consensus 293 ~~l~~~~~~~~~~~ 306 (349)
..++.|+..+|+.+
T Consensus 82 ALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 82 ALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHcCChH
Confidence 88888888887763
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=44.63 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcccCC
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN-LDTAYKCAQKCLQHEET 287 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~ 287 (349)
.++.+|.++..+|+...|..+|..+++.... ...+..-.+.+++.+|.++..+|. ..++..++.+|-....+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~--~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESK--RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 4567899999999999999999988854222 123344578999999999999998 99999999999887643
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0024 Score=50.52 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
...+.-....|+.++|..+|+.++.+.|.++.++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+...
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 444555567788888888888888888888888888888888778888888888888888888888777665543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.014 Score=45.03 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHH-------HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 212 GKALFKLAKLYDKLNETEAAADL-------FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+..+..+|.+|..+|+.+....+ |.+++..... .........+.+.+|.+..+.|++++|..+|.+++..
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~---~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF---PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC---CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 55667778888888775544444 4444443322 1223345778889999999999999999999999876
Q ss_pred cC
Q psy9209 285 EE 286 (349)
Q Consensus 285 ~~ 286 (349)
..
T Consensus 195 ~~ 196 (214)
T PF09986_consen 195 KK 196 (214)
T ss_pred CC
Confidence 43
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=38.48 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 209 (349)
.+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34444455555555555555555555555555555555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=43.99 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++.....+..++-..... ..+.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~---~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK---GGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---cchHHHHH
Confidence 45666777777777777777777776655322 2445566667777777777777777766554333 11122223
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.....-|..+...++|.+|...|-.+...
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 34444566667778888888877776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0027 Score=50.30 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=62.7
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
+.-..+.|+.++|...|+-++.++|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+...
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 334456799999999999999999999999999999998889999999999999999999998888776543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0091 Score=47.65 Aligned_cols=73 Identities=18% Similarity=0.091 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
..++-.+|.+.++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 3555667777777777777777777777777777777777777777777777777777777777776554433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=38.56 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhCC
Q psy9209 96 VLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRL 159 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~ 159 (349)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++.. ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555555666666666666666666666666666666666554432 3333344444444443
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.014 Score=49.67 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Q psy9209 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL-PYYGLYYYKQA 170 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~ 170 (349)
...-...|+.++...+.++..|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...+.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 35567788899988888899998888888888889999999999999999999999988887776665 88999999999
Q ss_pred HhcCCCChHHHHHHHHH
Q psy9209 171 HMVRPNDPRMLTALGEA 187 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~ 187 (349)
++.+|+++..|...-.+
T Consensus 167 LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhcCCCChHHHHHHHHH
Confidence 99999999887655443
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.018 Score=48.96 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q psy9209 57 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN-TNAAIQCYRQ 135 (349)
Q Consensus 57 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~ 135 (349)
.-...|+.+....+.+...|..+...+.. .+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk---~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKK---KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH---hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34557788887788788887766655444 3568899999999999999999999988887777666 9999999999
Q ss_pred HHHhCcccHHHHHHHHH
Q psy9209 136 AIEINNLDYRAWYGLGQ 152 (349)
Q Consensus 136 a~~~~~~~~~~~~~l~~ 152 (349)
++..+|+++..|...-.
T Consensus 166 gLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HhhcCCCChHHHHHHHH
Confidence 99999999988865444
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=44.67 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCHHH-------HHHHHHHHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 144 YRAWYGLGQTYEILRLPYY-------GLYYYKQAHMVRPN------DPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+..+..+|++|...|+.+. |+..|.++++.... ...+.+.+|.+..+.|++++|..+|.+++..
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445555555555555332 33334444332211 1245566677777777777777777776655
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0043 Score=35.49 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 80 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~ 80 (349)
.++.++..+++.|+|++|..+.+.+++..|++..+..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4678889999999999999999999999999988765443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.012 Score=47.06 Aligned_cols=72 Identities=11% Similarity=-0.035 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 217 (349)
...++-.+|...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|..-++..++..|+.+.+-.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 445666677777777777777777777777777777777777777777777777777777777776665443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00088 Score=50.55 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=64.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCCCCCCCC
Q psy9209 263 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPANPAY 336 (349)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 336 (349)
....+.++.+.|.+.|.+++.+.|.....|..+|....+.|+++.|...|++.++++|++.....-.+..++.-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~ 76 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRG 76 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCC
Confidence 34567789999999999999999999999999999999999999999999999999999987766555555553
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.15 Score=41.36 Aligned_cols=276 Identities=13% Similarity=0.068 Sum_probs=168.1
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch--HHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK-TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLL 79 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l 79 (349)
++.....++.++++.++..++........++.. ...-.+...+|..+...|+.++-....+..-...... +.+....
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444556677899999999988542222222111 1122468899999999999887766665543322111 1111112
Q ss_pred HH-HHHhcCCCcchHHHHHHHHHHHhhCcccHH------HHHHHHHHHHhcCChHHHHHHHHHHHHh----Cc--ccHHH
Q psy9209 80 RS-IAQKRQPDESSSQAVLYFQRALKLNPNYLG------VWTLLGHEYMEMKNTNAAIQCYRQAIEI----NN--LDYRA 146 (349)
Q Consensus 80 ~~-~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~--~~~~~ 146 (349)
.. +-......+..+.-+..+..+++.....-. .-..+..+|...++|.+|+......+.- +. ...++
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev 170 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEV 170 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeee
Confidence 22 222222334455666666666655433222 2256788999999999999888777652 22 23566
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCh--HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---cHH---
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVR-----PNDP--RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---DGK--- 213 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~--- 213 (349)
+..-..+|....+..+|...+..+-... |... ..-..-|..+....+|..|..+|-++++-... ...
T Consensus 171 ~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~ 250 (411)
T KOG1463|consen 171 HLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALT 250 (411)
T ss_pred hhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHH
Confidence 7777888899999999888887765431 1111 22233466666778999999999999886321 122
Q ss_pred HHHHHHHHHHhcCcHHHHHHHH--HHHHhcccccCCCCCCcchHHHHHHHHHHHHHh--CCHHHHHHHHHHHHcccCC
Q psy9209 214 ALFKLAKLYDKLNETEAAADLF--MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA--NNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~ 287 (349)
.+-.+-.+-...+..++--..+ +.+++.... ...+....+..+... .+|+.|+.-|..-+..+|-
T Consensus 251 sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~---------~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 251 SLKYMLLCKIMLNLPDDVAALLSAKLALKYAGR---------DIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCc---------chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 2333334444556666554444 344443333 678888888887664 5888999888888777663
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.092 Score=45.81 Aligned_cols=136 Identities=18% Similarity=0.026 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 55 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 55 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
..-++..+...+.++|.++....... +...+...++...+.-.+...+..+|++..++.+++......|....+...+.
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33366667777777888877754443 55666677888889999999999999999999999999888887777766666
Q ss_pred H-HHHhCcccHHHHHH------HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 135 Q-AIEINNLDYRAWYG------LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 135 ~-a~~~~~~~~~~~~~------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
. +....|.+...... ++.....+|+..++....+++....|.++.+...+.....+.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 5 77778887655544 488888899999999999999999999877666555554333
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.081 Score=46.76 Aligned_cols=211 Identities=14% Similarity=0.065 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh--------------hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-----
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQH--------------EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRA----- 102 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~----- 102 (349)
|..++...+..=+++-|.+.|.++-.+ ....|... +++ ..+.-.|.+.+|-+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i-LlA---~~~Ay~gKF~EAAklFk~~G~enR 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL-LLA---DVFAYQGKFHEAAKLFKRSGHENR 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH-HHH---HHHHhhhhHHHHHHHHHHcCchhh
Confidence 788888888888888888888776432 01111111 111 2222247888888877653
Q ss_pred -HhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhCCHHHHHHHH----------HH
Q psy9209 103 -LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLGQTYEILRLPYYGLYYY----------KQ 169 (349)
Q Consensus 103 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~----------~~ 169 (349)
++...+ .-.+..+.-++..|..++-..+.++-.+- +-+.+. .-+..+...|+.++|+.+. +-
T Consensus 664 AlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI 738 (1081)
T KOG1538|consen 664 ALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDI 738 (1081)
T ss_pred HHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHH
Confidence 222111 11244455555556555554444443221 111121 2345566667777666542 22
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
+-+++..+.+.+...+..+.....+.-|.+.|.+.-.. -.+...+...++|.+|...-++.-+.
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~-------- 802 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF-------- 802 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc--------
Confidence 22233344445555555555555555555555543221 12344556667777776655543333
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
...+++..|..+....++++|.+.|.++
T Consensus 803 ----~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 803 ----KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ----cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3345555566666666666666555554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0051 Score=51.88 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=105.1
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (349)
..|+.-.|-.-...++...|..|......+.+...+|.|+.+...+..+-..-.. ...+...+-......|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---------~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---------TDSTLRCRLRSLHGLA 371 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---------CchHHHHHHHhhhchh
Confidence 4577777888888888888888888888889999999999988877665544333 3445555667778888
Q ss_pred CHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccCCCCCCCC
Q psy9209 270 NLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSKFPANPAY 336 (349)
Q Consensus 270 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 336 (349)
++++|.......+...-..+++...-+.....+|-++++..++++.+.++|.....+.+++.+...+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYF 438 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceec
Confidence 9999998888887766666666666666666778889999999999999988877777776554444
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.26 Score=43.11 Aligned_cols=167 Identities=14% Similarity=-0.027 Sum_probs=96.8
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCC---CCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----------------
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAP---PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH---------------- 68 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---------------- 68 (349)
....|++|...|.-++...+++..- .++......+..++.+...+|+.+-|....++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456889999998888766655311 111222357889999999999999888888877621
Q ss_pred -----hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc-cHHHHHHHHHHH-HhcCChHHHHHHHHHHHH---
Q psy9209 69 -----EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN-YLGVWTLLGHEY-MEMKNTNAAIQCYRQAIE--- 138 (349)
Q Consensus 69 -----~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~--- 138 (349)
.|.+...+..+......+.+.|-+..|.++++-.++++|. +|-+...+..+| ++..+|.=-++.++..-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2333333333333334445567777777777777777776 665544444433 344555555555444422
Q ss_pred --hCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCC
Q psy9209 139 --INNLDYRAWYGLGQTYEILRL---PYYGLYYYKQAHMVRP 175 (349)
Q Consensus 139 --~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~ 175 (349)
.-|+ ...-..++..|..... -+.|...+.+|+...|
T Consensus 410 l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2222 1222344444444443 3456666666666655
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.028 Score=53.51 Aligned_cols=171 Identities=13% Similarity=0.076 Sum_probs=130.8
Q ss_pred HHHHHHHHHhcCChHHHHH------HHH-HHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCC
Q psy9209 113 WTLLGHEYMEMKNTNAAIQ------CYR-QAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV--------RPND 177 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~------~~~-~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 177 (349)
....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|+.++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3556667777788887777 444 223346778889999999999999999999988777554 3445
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCC
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAI--------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
...+.+++...+..++...|...+.++..+ .|....+..+++.++...++++.|+.+.+.++....... ..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~-g~ 1093 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL-GP 1093 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-Cc
Confidence 567788888888888999999998888765 455556677888888899999999999999998654421 11
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
........+..+++++...+++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23346778888899999999999988887776554
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.3 Score=42.39 Aligned_cols=224 Identities=9% Similarity=-0.082 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--DYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
+...+.+.......|+.+......+..+...|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44445555556678888888888899999999988889999888872111 2345678888899999999999999888
Q ss_pred HhcCCCChHHHHHHH-HHHHH--------hhCHHHHHHHHHHHHcc-------cccc--------------------HH-
Q psy9209 171 HMVRPNDPRMLTALG-EAFEK--------QEKISEAMKCYNKSRAI-------GDAD--------------------GK- 213 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~a~~~-------~~~~--------------------~~- 213 (349)
.+.+.-+.-.|..++ .|+.. .|+-++|..+++..... .|-. +.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la 409 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLA 409 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccccc
Confidence 776544433444333 44432 22444443333332211 1111 00
Q ss_pred -HHHHHHHHHHhc--CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-----
Q psy9209 214 -ALFKLAKLYDKL--NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE----- 285 (349)
Q Consensus 214 -~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----- 285 (349)
.++.++.++.-- ...++.. -++.. ...|. ..+.....-.++.+|.++...|+...|..+|...++..
T Consensus 410 ~P~~El~Y~Wngf~~~s~~~l~-k~~~~-~~~~~---~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~ 484 (546)
T KOG3783|consen 410 SPYYELAYFWNGFSRMSKNELE-KMRAE-LENPK---IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTE 484 (546)
T ss_pred chHHHHHHHHhhcccCChhhHH-HHHHH-HhccC---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 112222222211 1112222 11111 12233 22444456667788999999999999999999887431
Q ss_pred -C-ChHHHHHHHHHHHHHcCC-CCCchhHHHHhhhcCCC
Q psy9209 286 -E-TAEEAKSLLRSIAQKRQP-DESSSQPMECAVVLDPV 321 (349)
Q Consensus 286 -~-~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~ 321 (349)
+ -.|.+++-+|.++..+|. ..++..++.+|-+...+
T Consensus 485 d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 485 DLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred ccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 1 237788999999999998 89999999998776543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.2 Score=43.87 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=103.6
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHH--HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTL--LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
+...-++..+...+.++|.++..+.. +...+...+....+.-.+..++..+|.+..+..+++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444666666677788888776433 4777788899989999999999999999999999999988888777666665
Q ss_pred HH-HHhcCCCChHHHHHH------HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 168 KQ-AHMVRPNDPRMLTAL------GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 168 ~~-~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
.. +....|.+......+ +.....+|+..++....+++....|.++.+...+....
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 55 888888887665555 88888889999999999999999988876665554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.041 Score=38.96 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=53.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcH
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNET 228 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 228 (349)
...-...++.+++...+..+--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 333344667777777777777777777777777777777777777777777777766666666666666666666653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.016 Score=49.05 Aligned_cols=122 Identities=11% Similarity=-0.037 Sum_probs=98.5
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
.|+.-.|-.-...++...|.+|......+.+...+|.|+.|...+..+-..-.....+...+-.....+|++++|.....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 47888888888888888899898888899999999999999888876655433444455566677788899999999888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
-.+.-.-.++++...-+..-..+|-++++..++++.+.++|.
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888877777877777777777888899999999999988764
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.087 Score=35.61 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=28.7
Q ss_pred HHhcCChHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNL------------DYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.+.-|-|++|...++++.+.... +.-++-.|+..+..+|+|++++..-.+++
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34456677777777777664211 23445566666666777666655544443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0042 Score=31.06 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
+..+|.++...|++++|+..++++++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3344444444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.048 Score=40.76 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc--cHH----HH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN--YLG----VW 113 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~----~~ 113 (349)
.++..+|..|.+.|+.+.|++.|.++................+..+....+++.....+..++-..-.. +.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567778888888888888888888776554332222222222222222236777777776666544222 111 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~ 137 (349)
..-|..++..++|..|.+.|-.+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 333445555566666665555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.094 Score=46.81 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=20.1
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 137 (349)
+| ++..|..++......-.++.|...|-++-
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 44 36777777777666666666666666553
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0033 Score=31.49 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.++..+|.++...|++++|...++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888877664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=36.12 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL 105 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (349)
....|.-++...+.++|+..++++++..++.++.+..++.+..++...|++.+.+.+..+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888899999999999888888888888898888888888888888877665544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.28 Score=39.86 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc-CChHHHH
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAK 292 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~ 292 (349)
+...++.|..++|+..+|++.++...+..|-. ....++-+|...+....-|.+....+-+.-++. |.+....
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~-------t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~ic 349 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLL-------TMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAIC 349 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHH
Confidence 44578889999999999999998887766531 134566667777777666666655555544332 3333322
Q ss_pred HHHHHH-------------HHHcCCC---CCchhHHHHhhhcCCCCCCcc
Q psy9209 293 SLLRSI-------------AQKRQPD---ESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 293 ~~l~~~-------------~~~~~~~---~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+.-+.+ ..+.|-. ..|++...++++.+|.-|..+
T Consensus 350 YTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 350 YTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 221111 1122211 357888899999999877643
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.039 Score=39.08 Aligned_cols=72 Identities=6% Similarity=-0.216 Sum_probs=38.1
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (349)
..++.+++...+..+--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+...-.++.|+..+|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 345555555555555555555555555555555555555555555555555544444444445555544444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=36.20 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHhcC---cHHHHHHHHHHHHh-cccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 211 DGKALFKLAKLYDKLN---ETEAAADLFMEFVS-KLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
.....++++.++.... +..+.+.+++..++ -.|. ..-+..+.|+.-+.+.|+|+.++.+.+..++..|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--------~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--------RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--------cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 4566777787776654 45567888888886 3333 2567788889999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHH
Q psy9209 287 TAEEAKSLLRSIAQK 301 (349)
Q Consensus 287 ~~~~~~~~l~~~~~~ 301 (349)
++..+..+-..+...
T Consensus 103 ~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 103 NNRQALELKETIEDK 117 (149)
T ss_pred CcHHHHHHHHHHHHH
Confidence 988887766655543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.12 Score=35.04 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=69.1
Q ss_pred HHHHHHHH--HHHHhCCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHhhCHHHHHHHHHHHHc----
Q psy9209 145 RAWYGLGQ--TYEILRLPYYGLYYYKQAHMVRPND------------PRMLTALGEAFEKQEKISEAMKCYNKSRA---- 206 (349)
Q Consensus 145 ~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---- 206 (349)
.+|..|+. -....|-|++|...+.++.+....- ..++..++..+..+|+|++++..-.+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 34444443 3455688999999999998864332 24667888999999999988776666664
Q ss_pred ---cccccHHH----HHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 207 ---IGDADGKA----LFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 207 ---~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
++.+.... .++.+..+...|+.++|+..|+.+-++-
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 44554444 4677888999999999999999987753
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.23 Score=43.33 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=101.4
Q ss_pred hcCChHHHHHHHHHHHHh------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------------
Q psy9209 122 EMKNTNAAIQCYRQAIEI------------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV---------------- 173 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------- 173 (349)
....|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345577888888877664 3556788888999999999988877777666532
Q ss_pred -----CCCChH---HHHHHHHHHHHhhCHHHHHHHHHHHHccccc-cHHHHHHHHHHH-HhcCcHHHHHHHHHHHH----
Q psy9209 174 -----RPNDPR---MLTALGEAFEKQEKISEAMKCYNKSRAIGDA-DGKALFKLAKLY-DKLNETEAAADLFMEFV---- 239 (349)
Q Consensus 174 -----~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~---- 239 (349)
.|.+.. +++..-..+.+.|-+..|.++.+-.++++|. +|.....+..+| .+..+|.=-++.++..-
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 222222 2333445566789999999999999999988 666555555544 34455655555555442
Q ss_pred -hcccccCCCCCCcchHHHHHHHHHHHHHhCC---HHHHHHHHHHHHcccC
Q psy9209 240 -SKLDTFAAPPDKTCGFFAFKYLANHHLKANN---LDTAYKCAQKCLQHEE 286 (349)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 286 (349)
...|+ ...-..++..|..... -+.|...+.+|+...|
T Consensus 410 l~~~PN----------~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPN----------FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCC----------chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 22333 2333456666666654 5678888888877766
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.062 Score=51.30 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=117.6
Q ss_pred CcchHHHHH------HHHH-HHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CcccHHHHHHHHHH
Q psy9209 89 DESSSQAVL------YFQR-ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------NNLDYRAWYGLGQT 153 (349)
Q Consensus 89 ~~~~~~A~~------~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~ 153 (349)
.|.+.+|.+ .+.. .-.+.|..+..+..++.++...|++++|+..-.++.-+ .|+....+.+++..
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~ 1024 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY 1024 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH
Confidence 455665555 4442 23456788889999999999999999999988887654 34556778888888
Q ss_pred HHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc--------ccHHHHHH
Q psy9209 154 YEILRLPYYGLYYYKQAHMV--------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD--------ADGKALFK 217 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~ 217 (349)
....++...|+..+.++..+ .|.......+++.++...++++.|+.+.+.|...+. .....+..
T Consensus 1025 ~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~ 1104 (1236)
T KOG1839|consen 1025 EFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHA 1104 (1236)
T ss_pred HHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHH
Confidence 88888999999998888765 455556667888888899999999999999988632 13456677
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
++++....+++..|....+....+.+
T Consensus 1105 ~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1105 LARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 78888888888877777766665543
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.066 Score=47.13 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
++++-|.-.++..+|..+++.|...+...|.+. .....++.||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 345566677788999999999999998877654 45678999999999999999999999999999998888888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
.+....|.-++|+....+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 88899999999999988776653
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.038 Score=36.39 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=49.2
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 71 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 71 (349)
.+.|++..|++.+.+..+................++..+|..+...|++++|+..+++++.+...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 57899999999998888654433332222233467888999999999999999999999977543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.25 Score=36.13 Aligned_cols=131 Identities=11% Similarity=-0.042 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHHhhCccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--c--HHHHHHHHHHHHHhCCHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNY--LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--D--YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~--~~~~~~l~~~~~~~~~~~~A 163 (349)
+..++|+..|...-+..-.. ..+.+..|.+..+.|+...|+..|..+-.-.|- - ..+...-+.++...|-|+.-
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 56666666666655443222 234566677777777777777777776554321 1 12334445556666777665
Q ss_pred HHHHHHHH-hcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 164 LYYYKQAH-MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
....+..- ..+|-...+.-.||..-++.|++.+|..+|.+... +...|....+.+.+
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 55444322 12333334555667777777777777777776655 33333333333333
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0089 Score=45.38 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=44.4
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD 143 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 143 (349)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445777777778888888777777777888877777888888888888888777765
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.37 Score=42.79 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHH
Q psy9209 77 SLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY------LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150 (349)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 150 (349)
..+-+-+...++..+|..+++.|...+..-|.+ ......+..||..+.+.+.|.+++++|-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 344444555667789999999999998876654 34567888999999999999999999999999999888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
..+....+..++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888999999999988877655
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.17 Score=33.28 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=49.0
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 222 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 222 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
..+.|++.+|.+.+.+.+.................+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45778999999888888877655211111113567788899999999999999999999998753
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.87 Score=43.45 Aligned_cols=104 Identities=11% Similarity=-0.047 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhhCcccHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ-------PDESSSQAVLYFQRALKLNPNYLGVWT 114 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~ 114 (349)
......++.....|+.|+..|+++-..-|+..+.+.....+|.... ....+++|+..|++.- -.|.-|--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHH
Confidence 3445567778888999999999998888887776665555544332 1125677777777643 3566677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcccHHH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRA 146 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 146 (349)
..|.+|..+|++++-++++.-+++..|+.|..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88889999999999999999999987776543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=30.70 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777777664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.54 Score=40.93 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=23.9
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+.|+.+.|.+..++ .+++..|..||......|+++-|..+|.++
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 355565555554322 224455666666666666666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.31 Score=40.66 Aligned_cols=136 Identities=11% Similarity=0.055 Sum_probs=91.7
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hhchHHHHHHHHHHHH
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH---EETAEEAKSLLRSIAQ 84 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~l~~~~~ 84 (349)
.+.++.+|..+-...+..+.......-+...+..|+.+..++-..|+...-...+...+.. ..+......++..+..
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 4577888887777766543333222223344567888888998999877776666665543 2122222333455566
Q ss_pred hcCCCcchHHHHHHHHHHHhh--Cc--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc
Q psy9209 85 KRQPDESSSQAVLYFQRALKL--NP--NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD 143 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 143 (349)
.|...+.++.|.....+..-- .. ......+.+|.+..-+++|..|.+++-.|+...|.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 677778899998887776411 11 234456889999999999999999999999999974
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.76 Score=41.04 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=97.1
Q ss_pred ChhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhhchHHHHHH
Q psy9209 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ--HEETAEEAKSL 78 (349)
Q Consensus 1 l~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~ 78 (349)
|+|.++.-+|++.+|.++|.+.-. ....-....-.-.+..+.-++..|.-++-....++--+ .+-+.|.+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~-----enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka--- 708 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGH-----ENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA--- 708 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCc-----hhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---
Confidence 456777778888888888755320 00000000001133444555555554443333332111 11111111
Q ss_pred HHHHHHhcCCCcchHHHHHHH----------HHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYF----------QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
.+..+...|+.++|+... +-+-+++....+.+...+..+.....+.-|.+.|.+.-.. -
T Consensus 709 ---AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------k 777 (1081)
T KOG1538|consen 709 ---AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------K 777 (1081)
T ss_pred ---HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------H
Confidence 123344457777776643 1222334444556666666677777777777777665321 2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 149 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
.+.+++...++|++|....++.-+.- +.+++-.|..+.+..++++|-+.|.++
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 34456667788888877766543322 356777788888888888887766655
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.63 Score=37.09 Aligned_cols=270 Identities=11% Similarity=-0.023 Sum_probs=157.4
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccc-cCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----hhchHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDT-FAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH-----EETAEEAK 76 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~ 76 (349)
|+-..+.+++++|+..|.+++..--. .....+.. -.+...++..|...|++..-.+.....-+. .|......
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEq--E~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQ--EATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHH--HHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 44456788999999999999853111 01111111 246789999999999987655544443322 12222221
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHH------HHHHHHHHHhcCChHHHHHHHHHHHHh------CcccH
Q psy9209 77 SLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV------WTLLGHEYMEMKNTNAAIQCYRQAIEI------NNLDY 144 (349)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~ 144 (349)
...+-..-.....++.-+..+...++........ -..+...+++.|.|.+|+......+.- .+...
T Consensus 88 --rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 88 --RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred --HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 1112222334566777777777777654332222 245677889999999999988776542 23446
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHH--HHHHHHHHHHhhCHHHHHHHHHHHHcccc---ccHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMV-----RPNDPRM--LTALGEAFEKQEKISEAMKCYNKSRAIGD---ADGKA 214 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~ 214 (349)
.++..-..+|....+..++...+..+... .|....+ -..-|...+.-.+|..|..+|-++++-.. .+..+
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kA 245 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKA 245 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHH
Confidence 67777788888888888887777666443 2222222 22335566677889999999999887632 12222
Q ss_pred H-----HHHHHHHHhcCcHHHHHHHHH--HHHhcccccCCCCCCcchHHHHHHHHHHHHH--hCCHHHHHHHHHHHHccc
Q psy9209 215 L-----FKLAKLYDKLNETEAAADLFM--EFVSKLDTFAAPPDKTCGFFAFKYLANHHLK--ANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 215 ~-----~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~ 285 (349)
. ..+..+. .+..++....++ ..++...+ ....+....+..+.. ..+|..|+..|..-+..+
T Consensus 246 c~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~--------r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D 315 (421)
T COG5159 246 CVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDD--------RMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQD 315 (421)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhh--------hhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccC
Confidence 2 2223322 233333333332 22221111 145666666666644 357888888888776665
Q ss_pred C
Q psy9209 286 E 286 (349)
Q Consensus 286 ~ 286 (349)
|
T Consensus 316 ~ 316 (421)
T COG5159 316 S 316 (421)
T ss_pred H
Confidence 4
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.3 Score=40.72 Aligned_cols=120 Identities=5% Similarity=-0.080 Sum_probs=71.0
Q ss_pred HHHhhCHHHHHHHHHHHHcccccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDAD----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN 263 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (349)
-....+.+.|...+.+.....+-. ..++..+|.-....+...+|...+..+..... ..........
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~----------~~~~~e~r~r 320 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ----------STSLLERRVR 320 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC----------CcHHHHHHHH
Confidence 334556667777776543332211 22333344333333224566666655443221 1233333344
Q ss_pred HHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 264 HHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 264 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
+....++++.+..++...-....+.....+++|..+...|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555788888888887775444445677888999998889999999999999743
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.34 Score=33.77 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCC---hHHHHHHHHHHHH-hCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 110 LGVWTLLGHEYMEMKN---TNAAIQCYRQAIE-INNL-DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~---~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
....++++.++....+ ..+.+.+++..++ -.|. ..+..+.|+..+.+.++|+.++.+.+..++..|++..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3445556665554433 3455666666664 2222 244556666666666666666666666666666665543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.02 Score=30.85 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
..++.++|.+|..+|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999875
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.24 Score=41.54 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=66.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCc--------c-----c-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINN--------L-----D-----YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP 178 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~--------~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (349)
|..+++++.|..|..-|..++++.. . + ..+-..+..||.++++.+.|+....+.+.++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4556667777777777777766521 1 1 12344678889999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
.-+...|.+...+.+|.+|...+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999988877665543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.067 Score=46.03 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHH
Q psy9209 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL---RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCY 201 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (349)
....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-...+++++|....+++.++.++..++++.+|+.+.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 345566666666666666666666666555543 34445555556666666666666666666666666666666666
Q ss_pred HHHHcccc
Q psy9209 202 NKSRAIGD 209 (349)
Q Consensus 202 ~~a~~~~~ 209 (349)
..+....|
T Consensus 469 ~alq~~~P 476 (758)
T KOG1310|consen 469 WALQMSFP 476 (758)
T ss_pred HHHhhcCc
Confidence 55555555
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.03 Score=44.66 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=58.1
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG-LGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 99 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
|.++....|+++..|...+......|-+.+-...|.+++..+|.+++.|.. -+.-+...++.+.+...+.+++..+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444456667777776666666777777777777777777777777765 3445566677777777777777777777
Q ss_pred hHHHHHH
Q psy9209 178 PRMLTAL 184 (349)
Q Consensus 178 ~~~~~~l 184 (349)
|..|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 7766544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.4 Score=38.46 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=89.1
Q ss_pred CcchHHHHHHHHHHHhhCccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNY-LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
.++++++.+..... ++-|.- ..-...++..+.+.|-++.|+... .++...+.|+ .+.|+.+.|.+..
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHH
Confidence 37888877776521 222332 234566777888888888887753 2345555554 5788888887765
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 247 (349)
++ .+++..|..+|.....+|+++-|..+|+++-. +..+..+|...|+.+.=.+....+......
T Consensus 342 ~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~--- 405 (443)
T PF04053_consen 342 KE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDI--- 405 (443)
T ss_dssp CC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H---
T ss_pred Hh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCH---
Confidence 43 34778999999999999999999999988643 334666677777765555554444432211
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 248 PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
...-.+++..|+.++.++.+.+.
T Consensus 406 -----------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 406 -----------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 11223344456666666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.035 Score=44.31 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=44.1
Q ss_pred hchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHH
Q psy9209 70 ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTL-LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
|+++..|..+...... .|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++..+|+++..|.
T Consensus 104 f~D~k~w~~y~~Y~~k---~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIK---KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3444444443333222 355666666666666666666666644 444455566666666666666666666666655
Q ss_pred H
Q psy9209 149 G 149 (349)
Q Consensus 149 ~ 149 (349)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 4
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.092 Score=45.25 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh---hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ---EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 236 (349)
...|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...+++++|....+++.|+.++..++++.+|+....
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 34444444444444444444444444444432 222333333444444444444444444444444444444444444
Q ss_pred HHHhccc
Q psy9209 237 EFVSKLD 243 (349)
Q Consensus 237 ~~~~~~~ 243 (349)
.+....|
T Consensus 470 alq~~~P 476 (758)
T KOG1310|consen 470 ALQMSFP 476 (758)
T ss_pred HHhhcCc
Confidence 4444433
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.15 Score=40.29 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTA 183 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 183 (349)
.++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++-+...++..|+++.+-..
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3344456666667777777777777767666666666777777777777777776666666666654443
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.2 Score=36.57 Aligned_cols=276 Identities=12% Similarity=0.039 Sum_probs=163.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh--hhchHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHH---HhhCcccH--
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQH--EETAEEA-----KSLLRSIAQKRQPDESSSQAVLYFQRA---LKLNPNYL-- 110 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~-----~~~l~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~-- 110 (349)
...+.......+.++++..+..++.. .|.+.+. -.....++..+.+.|+.++-....... +..-+...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45666666777788888888888863 1211111 112344556666667776655444433 22222211
Q ss_pred HHHHHHHH-HHHhcCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc----C--CCC
Q psy9209 111 GVWTLLGH-EYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYYKQAHMV----R--PND 177 (349)
Q Consensus 111 ~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~ 177 (349)
.....+-. +....+..+.-+..+..+++-....- ..-..+...|...++|.+|+......+.- + +.-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 11112222 22233455566777777776533322 22346788999999999999887766543 2 223
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-----ccccHH--HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAI-----GDADGK--ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
.+++..-..+|....+..+|...+..+-.. .|.... .=..-|.++....+|.-|..+|-++++-... ...
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s---~~~ 244 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS---LDD 244 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc---cCC
Confidence 466677788899999999999888877544 121111 2223356666778999999999999986654 223
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHH--HHHHcccCChHHHHHHHHHHHHH--cCCCCCchhHHHHhhhcCCC
Q psy9209 251 KTCGFFAFKYLANHHLKANNLDTAYKCA--QKCLQHEETAEEAKSLLRSIAQK--RQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~ 321 (349)
......++..+-.+-...+..++-...+ +.+++......++...++..+.. +.+++.|+..|+.-+..||-
T Consensus 245 ~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 245 DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 2333444444455555566666544443 44566666677777777777653 33556666666665555553
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.3 Score=37.22 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=117.0
Q ss_pred HHHhcCCH-HHHHHHHHHHhhhhhchHHHHHHHHHHHHhc---------CCCcchHHHHHHHHHHHhhCcccHHHHHHHH
Q psy9209 48 HHLKANNL-DTAYKCAQKCLQHEETAEEAKSLLRSIAQKR---------QPDESSSQAVLYFQRALKLNPNYLGVWTLLG 117 (349)
Q Consensus 48 ~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 117 (349)
...+.|.+ +++++.-.+.+..+|+....|..-..+.... .+..-.++-+.+...+++.+|+...+|+.+.
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 33344554 4566666777777888776665433222111 1122456667788889999999999999999
Q ss_pred HHHHhcCC--hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-
Q psy9209 118 HEYMEMKN--TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR----LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK- 190 (349)
Q Consensus 118 ~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 190 (349)
.++.+.+. +..=+.+.+++++.+|.+..+|...-.+..... ...+-+++..+++..++.+-.+|.....++..
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 99987764 578899999999999999877765544444332 35677888999999999999999888777652
Q ss_pred -----hhC------HHHHHHHHHHHHccccccHHHHHH
Q psy9209 191 -----QEK------ISEAMKCYNKSRAIGDADGKALFK 217 (349)
Q Consensus 191 -----~~~------~~~A~~~~~~a~~~~~~~~~~~~~ 217 (349)
.|+ ...-++.-..++-.+|++..+|+.
T Consensus 197 ~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 197 HPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred ccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 231 233445556666678887766654
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.7 Score=40.30 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=68.2
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc----C---CHHHHHHHHHHHhhhhhchHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----N---NLDTAYKCAQKCLQHEETAEEAKS 77 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~A~~~~~~~l~~~~~~~~~~~ 77 (349)
.+.....|++|+..|+++... -|....+..+.+..|.....+ | .+++|+..|++.-. .|.-| ..
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~ 554 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRES------FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAP--LE 554 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhc------CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc--hH
Confidence 466778899999999998843 334444457888888887653 3 36677777776543 22222 22
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHH
Q psy9209 78 LLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV 112 (349)
Q Consensus 78 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (349)
.++ -+.+|.+.|++++-++++.-+++..|++|..
T Consensus 555 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 555 YLG-KALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHh-HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 244 3467888899999999999999998887643
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.78 Score=33.67 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=92.1
Q ss_pred HHHhcCChHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhh
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP----RMLTALGEAFEKQE 192 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 192 (349)
-+.+.+..++|+..|...-+-.-.. .-+.+..+.+....|+...|+..|.++-...|... .+...-+.++...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3446678899999998876643332 45667888999999999999999999876544321 24455677788899
Q ss_pred CHHHHHHHHHHHH-ccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 193 KISEAMKCYNKSR-AIGDADGKALFKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 193 ~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
.|++-....+..- ..+|-...+.-.||..-.+.|++..|...|.+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 9998777665533 22555667778899999999999999999998876
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.62 Score=39.00 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=84.8
Q ss_pred HHHhCCHHHHHHHHHHHHhc-CCC--------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc----c--ccHHHHHHH
Q psy9209 154 YEILRLPYYGLYYYKQAHMV-RPN--------DPRMLTALGEAFEKQEKISEAMKCYNKSRAIG----D--ADGKALFKL 218 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~--~~~~~~~~l 218 (349)
++..+++.+|.++-+..+.. .-. ....|+.+..+|...|+...-...+...+... . ......+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34567888888877665542 111 12456677777777787666666655555441 1 123445566
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
-..|...+.++.|.....+.. .|. .......+..++.+|.+..-+++|..|.+++-.++...|.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~--~pe---~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSV--YPE---AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhhHHHHHHHHHhhccc--Ccc---ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 777777888888877765543 343 2233456777788888888888888888888888888886
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.7 Score=37.27 Aligned_cols=191 Identities=9% Similarity=-0.023 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHH------HHHHH-hcCCh---HHHHHHHHHHHHhCccc---HH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLL------GHEYM-EMKNT---NAAIQCYRQAIEINNLD---YR 145 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------a~~~~-~~~~~---~~A~~~~~~a~~~~~~~---~~ 145 (349)
++.+.....+.++...|.+++.-...++|+.....-.+ -.+.. .-..+ ..=+..++.+-..+-+. +.
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh 380 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVH 380 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 44444444556788888888888778888754221111 11111 11111 11233333332222222 33
Q ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH--HHHHHHc---------ccc---c
Q psy9209 146 AWYGLGQTYEILRL-PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK--CYNKSRA---------IGD---A 210 (349)
Q Consensus 146 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~a~~---------~~~---~ 210 (349)
.+..-|.-+++.|. -++|+..++.+++..|.+..+-...- .+-...|.+|+. .+.+.+. +.| .
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 44556777888887 78999999999999888875433221 111222333322 1122221 122 2
Q ss_pred cHHHHHHH--HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 211 DGKALFKL--AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 211 ~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
+.+.-..+ |..++.+|++.++..+-.=..++.|. +.++..+|.++...++|++|..++.+.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33444444 44567899999999988888889885 999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.8 Score=37.06 Aligned_cols=217 Identities=11% Similarity=0.012 Sum_probs=145.5
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-
Q psy9209 61 CAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI- 139 (349)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 139 (349)
.+++++..-|-.++.|.-.... ....++-+.|+...++++...|. ....++.+|...++-+.-..+|+++++-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y---~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEY---LIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH---HhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 4566666666666665544332 33457888999988888777765 6677788887777777777777766542
Q ss_pred -----------------Ccc-cH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH-HHH
Q psy9209 140 -----------------NNL-DY-----------RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE-AFE 189 (349)
Q Consensus 140 -----------------~~~-~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~ 189 (349)
+|. .+ -+|..+...-.+..-.+.|...|.++-+..-....++..-|. -+.
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence 010 01 122222223334445678888888887654233333333332 245
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (349)
..|++..|-..|+-.+...|+.+......-..+...++-+.|...|++++..-.. . .....|-.+...-..-|
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~-q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------T-QLKRIYDKMIEYESMVG 516 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------h-hhhHHHHHHHHHHHhhc
Confidence 6899999999999999999988877777777888999999999999988875443 0 13566666666667778
Q ss_pred CHHHHHHHHHHHHcccCChHH
Q psy9209 270 NLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 270 ~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+...+...=++..+..|....
T Consensus 517 ~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 517 SLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred chHHHHhHHHHHHHHcCcHhH
Confidence 888888887777777776533
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.19 Score=31.28 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=44.4
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 68 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 68 (349)
....+.++|+..+++++++. ++...++.++-.+..++...|++.+++.+...-+.+
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKI------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred hccchHHHHHHHHHHHHhhc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999543 334456678889999999999999998887665544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.048 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.074 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999988765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.34 Score=38.89 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhc
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVL 318 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 318 (349)
...++..++..+...|+++.+...+++.+..+|-+...+..+-..+...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 57788889999999999999999999999999999999999999999999999999999887653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.77 Score=34.71 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHhhCHHHHH
Q psy9209 125 NTNAAIQCYRQAIEI-NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN----DPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
.-+.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+. +++++..++.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 335666666554332 1135677777776665 56778888888888877443 4677888888888888887764
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.43 Score=40.12 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
..+..||+.+++.+-|+....+.+.++|....-+...+.++..+.+|.+|...+.-
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777776555443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.11 Score=27.37 Aligned_cols=29 Identities=41% Similarity=0.611 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
+++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.86 Score=36.20 Aligned_cols=72 Identities=13% Similarity=-0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 217 (349)
...++-..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+.-+...++..|+.+.+-..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 344555677788899999999999999999999888899999999999999999999888888877665443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.074 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCY 133 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~ 133 (349)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.34 Score=38.87 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
+..=+...+++++ .....++..++..+...|+++.+...+++.+..+|-+...|..+-..|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALE--ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444444555544 23466777888888888888888888888888888888888888888888888888888888776
Q ss_pred cc
Q psy9209 206 AI 207 (349)
Q Consensus 206 ~~ 207 (349)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 53
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.19 Score=26.11 Aligned_cols=32 Identities=13% Similarity=-0.044 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHH--HHHHHcccCC
Q psy9209 256 FAFKYLANHHLKANNLDTAYKC--AQKCLQHEET 287 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~--~~~a~~~~~~ 287 (349)
+.+..+|..+..+|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577888899999999999999 4466665553
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.25 Score=25.66 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQC 132 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~ 132 (349)
+..+|-.+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.7 Score=34.88 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
..+...+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+|+.-.+...|++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344556778888999999999999999999999999999999999999988888888775
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.5 Score=38.44 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q psy9209 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI 156 (349)
Q Consensus 95 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 156 (349)
|..+|.+|+.+.|..+..++.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999887655557788888887777
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.17 Score=26.56 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+++..||.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.67 Score=37.67 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
|..+|.+|..+.|.....+..+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888878888888877777776544446666677666655
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=93.00 E-value=2.8 Score=35.87 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=37.1
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHH--HHHHHHhcCCHHHHHHHHHHHhhh
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKY--LANHHLKANNLDTAYKCAQKCLQH 68 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~l~~ 68 (349)
+++-+.+.++|..|..++..+...++... . +..+.. .|..++..-++.+|.+.++..+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~-----~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGRE-----E--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchh-----h--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35556678888888888888775422211 1 123333 344456677788888888877654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.51 E-value=2.4 Score=34.08 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
+..|...|.+.+|+++.++++.++|-+...+..+..++...|+--.+.+.|++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44455555555555555555555555555555555555555555555544444
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.31 E-value=5 Score=32.29 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=22.4
Q ss_pred ccccHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhc
Q psy9209 208 GDADGKALFKLAKL-YDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 208 ~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 241 (349)
.|...+.+...+.+ |...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45555665555544 67789999999888776665
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=91.97 E-value=7 Score=33.19 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYM------------EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
-..++++.-.+.+..+|+...+|+..-.++. ...-.++-+.+...++..+|+...+|+....++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 3456777777788888887777644333322 2224567788888999999999999999999999776
Q ss_pred C--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh----CHHHHHHHHHHHHccccccHHHHHHHHHHHHh------cC
Q psy9209 159 L--PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE----KISEAMKCYNKSRAIGDADGKALFKLAKLYDK------LN 226 (349)
Q Consensus 159 ~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------~~ 226 (349)
. +..-+.+.+++++.+|.+..+|...-.+..... ...+=+++..+++..++.+..+|.....+... .|
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 4 578899999999999999888765544444332 35667888999999999999999887776552 23
Q ss_pred c------HHHHHHHHHHHHhcccc
Q psy9209 227 E------TEAAADLFMEFVSKLDT 244 (349)
Q Consensus 227 ~------~~~A~~~~~~~~~~~~~ 244 (349)
+ ...-......++-.+|+
T Consensus 204 ~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 204 NFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCcc
Confidence 1 22334455566666776
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.84 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh
Q psy9209 43 KYLANHHLKANNLDTAYKCAQKCLQH 68 (349)
Q Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~l~~ 68 (349)
+.++..|...|+.+.|...+++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56899999999999999999999853
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=90.92 E-value=6.8 Score=31.02 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH-HHhCCHHHHHHHHHHHHc
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH-LKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~ 283 (349)
.+.|...|++++.+.... ....+|.......+.+..| .-.|+.++|....++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 367888888887765431 1222444444555555555 447999999998888765
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=11 Score=33.25 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
-.+.-....+.+.+....+ ..++..++.+|... ..++-...+++.++.+-++...-..|+..|.. ++...+..+|.+
T Consensus 80 ~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 80 HKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred hHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 3455556677787776554 67888999999888 56777888999999888887777788887776 888889999988
Q ss_pred HHhcCCC---Ch---HHHHHHHHHHHHhhCHHHHHHHHHHHHcc-ccccHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 170 AHMVRPN---DP---RMLTALGEAFEKQEKISEAMKCYNKSRAI-GDADGKALF-KLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 170 ~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
++...-. ++ ++|..+-.. --.+.+.-.....+.-.. ......+.+ .+-.-|....++++|++.+.-.++.
T Consensus 157 a~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 157 ALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 8764211 11 222222210 012222222222222111 111122222 2223455667888888888888777
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHcccCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLK--------------------ANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~a~~~~~~ 287 (349)
+.. +..+.-.+...+.. -.++.+++.-|++.+..+..
T Consensus 235 d~k---------~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 235 DEK---------DVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred cch---------hhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 665 44554444444443 34667777777777665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.95 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
+...|..+...+.+.|+.++|.+.|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5788999999999999999999998763
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.79 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhCcccHHHHH
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWY 148 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~ 148 (349)
+.+...|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3344444444444443333333
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=90.77 E-value=4.2 Score=32.47 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
+...+|..|...|++++|..+|+.+...... ...++..+..|+...|+.+..+...-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666666666666666666666443211 234455566666666666665554433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.73 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQ 135 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~ 135 (349)
...|..+...+.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555566666666666666666554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.69 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 259 KYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
+.|+..|..+|+.+.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999854
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=90.60 E-value=6 Score=33.94 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh--------cCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHM--------VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
...|.+++.-+|+|..|++.++..-- ..+-....++.+|-+|+.+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777666554211 0112335667778888888888888887777653
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=90.59 E-value=5.7 Score=29.63 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHhCcccHHHH
Q psy9209 73 EEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM-----EMKNTNAAIQCYRQAIEINNLDYRAW 147 (349)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~ 147 (349)
|+....|+...... +.++++|.+.|..--..+. .+...+.+|..+. ..+++..|++.+..+... +.+.+.
T Consensus 34 Pe~C~lLgdYlEgi--~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC 108 (248)
T KOG4014|consen 34 PESCQLLGDYLEGI--QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQAC 108 (248)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHH
Confidence 34444444433322 2455555555544332221 2334444443332 233455566666655542 344455
Q ss_pred HHHHHHHHHh-----CC--HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 148 YGLGQTYEIL-----RL--PYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 148 ~~l~~~~~~~-----~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
..+|.++..- ++ .++|..++.++-.+ ++..+.+.|...+
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMY 154 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHH
Confidence 5555544421 12 34555555555443 2334444444433
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=90.57 E-value=13 Score=34.77 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
.++...|+|++|++++..+ .|. .........|..+... .+++-...+-+.+
T Consensus 498 ille~~~ny~eAl~yi~sl---p~~--------e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 498 ILLEDLHNYEEALRYISSL---PIS--------ELLRTLNKYGKILLEH-DPEETMKILIELI 548 (933)
T ss_pred HHHHHhcCHHHHHHHHhcC---CHH--------HHHHHHHHHHHHHHhh-ChHHHHHHHHHHH
Confidence 3456677788888776543 111 1345555667766664 4444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.1 Score=23.98 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.|..+-..+.+.|++++|.++|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444444455555555555555554443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=90.16 E-value=8 Score=30.62 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhch
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETA 72 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 72 (349)
+..++.+..+.|+|++.+.+.++++..+|+-
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 5678889999999999999999999886643
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=90.16 E-value=11 Score=32.32 Aligned_cols=61 Identities=10% Similarity=-0.160 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccH--HHHHHHH--HHHHHhCCHHHHHHHHHHHHhc
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--RAWYGLG--QTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
....+...+..++|..|...+..+...-|... ..+..+. ..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35567778899999999999999988523332 3344444 4456678889999999987764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=90.15 E-value=2.1 Score=23.95 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
+...|..+-..+.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999998754
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.1 Score=22.07 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
+.+.+...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555555555555554444
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=89.88 E-value=8.8 Score=30.66 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC------ChHHHHHHHHHHHH
Q psy9209 227 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE------TAEEAKSLLRSIAQ 300 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~ 300 (349)
.....++.+.++...... .........+...+|..|+..|++++|..+|+.+..... -...+...+..|..
T Consensus 153 hs~~iI~lL~~A~~~f~~---~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKK---YGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred hHHHHHHHHHHHHHHHHH---hccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 334556666666665543 112223466677889999999999999999999864421 23456667788888
Q ss_pred HcCCCCCchhHHHH
Q psy9209 301 KRQPDESSSQPMEC 314 (349)
Q Consensus 301 ~~~~~~~A~~~~~~ 314 (349)
..|+.+..+.+.-+
T Consensus 230 ~~~~~~~~l~~~le 243 (247)
T PF11817_consen 230 RLGDVEDYLTTSLE 243 (247)
T ss_pred HhCCHHHHHHHHHH
Confidence 88888766655433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.71 E-value=3.1 Score=32.03 Aligned_cols=53 Identities=15% Similarity=0.064 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL 142 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 142 (349)
+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|+
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 45555555555555555555555555555555555555555555555555554
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=89.62 E-value=9.6 Score=30.72 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHH----------------hCcccHHHHHHHHH-HHHHhCCHHHHHHHHHHH
Q psy9209 108 NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE----------------INNLDYRAWYGLGQ-TYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 108 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~ 170 (349)
.++..+..+|..+.+.|++.+|..+|-..-. -.|...+.+...+. -|...++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3678899999999999999999888743211 12333444444433 455677777777766555
Q ss_pred Hhc
Q psy9209 171 HMV 173 (349)
Q Consensus 171 ~~~ 173 (349)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=89.08 E-value=6.7 Score=33.25 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--------CChH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP--------NDPR 179 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~ 179 (349)
.++..+|.-|...|+++.|++.|-++-..... ....+.++..+-...|+|..-..+..++...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46788999999999999999999997665332 356777888888889999888777777765410 0123
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
+...-|.+.+.+++|..|..++-.+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455667777788899999998876643
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=89.06 E-value=6.1 Score=27.68 Aligned_cols=43 Identities=7% Similarity=-0.134 Sum_probs=23.6
Q ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 128 AAIQCYRQAIE--INNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 128 ~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+.++|..+.. +....+..|...|..+...|++++|.++|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 55555555544 23344555556666666666666666666554
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=88.94 E-value=12 Score=30.98 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHh--------------------------hCHHHHHHHHHHHHccc-cccHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ--------------------------EKISEAMKCYNKSRAIG-DADGK 213 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~A~~~~~~a~~~~-~~~~~ 213 (349)
++|+..-.-...+.|..++++-.++.++++. +-.+++...+.+++... |.-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 4555555555556666666655555444422 22456666666666542 22222
Q ss_pred HHHHHHHHHHh-----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--cC
Q psy9209 214 ALFKLAKLYDK-----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH--EE 286 (349)
Q Consensus 214 ~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~ 286 (349)
..-.++-++.. .-+|..-...|.-...+.|+ +.+-.+.+.......-.+.++...+-.... -.
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS----------PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS----------PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC----------CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 22223333222 23455555555555555554 344444455544444455555555544433 12
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 287 TAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
.....+...+.++.+.|+.++|...|++++.+.++.
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 333444555666666666666666666666665554
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=88.76 E-value=12 Score=33.71 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=23.5
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.+.|+++.|..+..++ ++..-|..||......+++..|.+++.++.
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4455555555443332 233445555555555555555555555553
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=88.67 E-value=0.96 Score=37.22 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
..|...++.++++.|..-+.+++..-...+ ..+..+... +...+.+.-.....+++.+-...
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s---------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~ 288 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS---------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKV 288 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc---------------ccccccccc---ccccccccccccccchHHhcccc
Confidence 345567788888888888877764321000 001111110 11111222233445577777888
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
+.+..|+..-..+++.++....+++..+..+....++++|++.++.+....|++..+...+..+-....
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 888888887777777777778888888888888888888888888888888888776665555444433
|
|
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=88.48 E-value=22 Score=33.38 Aligned_cols=296 Identities=12% Similarity=0.046 Sum_probs=147.3
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHH-
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQ- 84 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~- 84 (349)
...++++.-..+|.+++..+....... ......+...-..|...-..++-+.++...+... -+.++ ..-+.....
T Consensus 201 ~~~~d~k~~R~vf~ral~s~g~~~t~G--~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~ 277 (881)
T KOG0128|consen 201 KKSEDYKKERSVFERALRSLGSHITEG--AAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKA 277 (881)
T ss_pred cccccchhhhHHHHHHHhhhhhhhccc--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhc
Confidence 445778888888888886554443222 1112344455555555555566677777666543 11111 011111110
Q ss_pred --hcCCCcchHHHHH-------HHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q psy9209 85 --KRQPDESSSQAVL-------YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE 155 (349)
Q Consensus 85 --~~~~~~~~~~A~~-------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 155 (349)
......+++.|.+ .+++.++..|.....|..+-......|.+..-...+++++.-.+.+...|...+...-
T Consensus 278 h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d 357 (881)
T KOG0128|consen 278 HVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLD 357 (881)
T ss_pred chHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcc
Confidence 0001123444433 3444555555555667777778888899988888999999888888888887776443
Q ss_pred -HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH-HHHHHHHHHHccccccHHHHHHHHHHHH----------
Q psy9209 156 -ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS-EAMKCYNKSRAIGDADGKALFKLAKLYD---------- 223 (349)
Q Consensus 156 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------- 223 (349)
.++-.+.+...+.+++...|-....|-..-..+.+.+... .-...+.+++... ..+.+....+.
T Consensus 358 ~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~----~~l~~~~~~~rr~~~~~~~s~ 433 (881)
T KOG0128|consen 358 TELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT----VELHNDYLAYRRRCTNIIDSQ 433 (881)
T ss_pred cccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHhhcccchhh
Confidence 3444455566666666666655544433222222222111 1111222222110 00111111110
Q ss_pred ----hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcccCChHH-HHHHHHH
Q psy9209 224 ----KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK-ANNLDTAYKCAQKCLQHEETAEE-AKSLLRS 297 (349)
Q Consensus 224 ----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~-~~~~l~~ 297 (349)
....+..|...|.......-+ .....+...|.+... +++.+.++..++..+........ .|.....
T Consensus 434 ~~s~lr~~F~~A~~eLt~~~~~~~D--------t~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~ 505 (881)
T KOG0128|consen 434 DYSSLRAAFNHAWEELTELYGDQLD--------TRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAIN 505 (881)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHh
Confidence 011233444444333332111 034444444554443 35666676666666555444333 5555555
Q ss_pred HHHHcCCCCCchhHHHHhhh
Q psy9209 298 IAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 298 ~~~~~~~~~~A~~~~~~a~~ 317 (349)
+-...|+...+..++++++.
T Consensus 506 lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 506 LEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred HHHHhCCchhHHHHHHHHHh
Confidence 55556666666665555543
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.5 Score=36.15 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC-------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEIN-------------------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
+......++++.|..-+.+++..- +.-.....+++.+-...+.+..|+..-..++..++..
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Confidence 344555566666666555554421 1112234456777777888888887777777777788
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 223 (349)
..+++..+..+....++++|++.++.+....|.+..+...+..+-.
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 8888888888888888888888888888888887776665554433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.11 E-value=9.9 Score=28.98 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=59.7
Q ss_pred HHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc----ccHHHHHHHHHHHHhcCcHH
Q psy9209 155 EILRLPYYGLYYYKQAHMV-RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD----ADGKALFKLAKLYDKLNETE 229 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~ 229 (349)
+..-.-+.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+ -+++++..|+.++..+|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3343456777777666443 2256788888888776 6789999999999999843 36899999999999999999
Q ss_pred HHHH
Q psy9209 230 AAAD 233 (349)
Q Consensus 230 ~A~~ 233 (349)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8853
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=87.94 E-value=9.4 Score=28.55 Aligned_cols=187 Identities=14% Similarity=0.072 Sum_probs=116.8
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHH--hcCCCcchHHHHHHHHHHHhhCcccHHHHHHH
Q psy9209 40 FAFKYLANHHL-KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ--KRQPDESSSQAVLYFQRALKLNPNYLGVWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 116 (349)
.+...||..+. -+.+|++|..+|+.-...+.- +...+-++.... --...+++..|++.+..+-. .+.+.+...+
T Consensus 35 e~C~lLgdYlEgi~knF~~A~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~ 111 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYL 111 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhh
Confidence 56778887664 356788898888877654432 333333332211 11345689999999998876 5567888888
Q ss_pred HHHHHhc-----CC--hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 117 GHEYMEM-----KN--TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 117 a~~~~~~-----~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
|.++..- ++ .++|.+++.++..+. +..+.+.|...|....+ + +....|..... ...+..+.
T Consensus 112 gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~~~~~ 179 (248)
T KOG4014|consen 112 GLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRAELGS 179 (248)
T ss_pred hhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchhhhhh
Confidence 8877642 23 678999999998764 56667777766654321 1 11113311111 12344455
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhccc
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL----NETEAAADLFMEFVSKLD 243 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~ 243 (349)
-..+.++|.++--++-++. ++.+..++.+.|..- ++.++|..+-.++.++..
T Consensus 180 ~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~ 235 (248)
T KOG4014|consen 180 LSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIME 235 (248)
T ss_pred hhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHH
Confidence 6678899999988888775 455666666655432 356777777777776543
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=87.51 E-value=5.2 Score=28.59 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCC
Q psy9209 255 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDES 307 (349)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 307 (349)
.+.....+.-.+..|++.-|.++.+.++..+|++..++...+.++..+|...+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 56667778888999999999999999999999999999999999988875543
|
|
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=87.24 E-value=9 Score=32.72 Aligned_cols=128 Identities=16% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 75 AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
+...+..+...-...+..-+|+.+++.++..+|.+......+..+|...|-.+.|...|...--..-.....-+.+..-.
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~ 261 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRL 261 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHH
Q ss_pred HHhCCHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHH
Q psy9209 155 EILRLPYYGL-YYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202 (349)
Q Consensus 155 ~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (349)
...|....+. ..+..++.....+..-.......-++.|.|.+..+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 262 STLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred hccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=87.17 E-value=16 Score=30.27 Aligned_cols=185 Identities=14% Similarity=0.021 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
.+.....+..+..+-++....+++++|.-..++.+++.- ...-..+|.+.++++++... ..+.........
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE-----Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE-----EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQ 259 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh-----hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhh
Confidence 344444555566666666677777777766665444321 11245566666766665422 112222222222
Q ss_pred CChHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHhhCHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP--RMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|...+|.. +. ..+ ......++.+-.++|+..+|++.++...+..|-.. .++-++-..+....-|.+...
T Consensus 260 ~~~~da~~------rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 260 SPQHEAQL------RR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred ccchhhhh------hc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 11 112 22334678888888888888888888777666322 233455555555555544444
Q ss_pred HHHHHHcc-ccccHHHHHHHHHH-------------HHhcCc---HHHHHHHHHHHHhcccc
Q psy9209 200 CYNKSRAI-GDADGKALFKLAKL-------------YDKLNE---TEAAADLFMEFVSKLDT 244 (349)
Q Consensus 200 ~~~~a~~~-~~~~~~~~~~l~~~-------------~~~~~~---~~~A~~~~~~~~~~~~~ 244 (349)
.+-+.-++ -|..+.+.+.-+.+ ..+.|- -..|++...++++.+|.
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH 394 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence 44333332 23222222211111 111121 23577888889998887
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=87.09 E-value=1.3 Score=21.49 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQ 67 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~ 67 (349)
+|..+-..|.+.|++++|...+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 366677788888888888888877654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=86.92 E-value=16 Score=30.24 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--------------------------CCHHHHHHHHHHHHhcCCCCh-
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL--------------------------RLPYYGLYYYKQAHMVRPNDP- 178 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~A~~~~~~~~~~~~~~~- 178 (349)
-++|+.+-.-...+-|..++++-.++.+.... +-.+++...+.++.....--+
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 46778777777888898888887777666532 224667777888776643222
Q ss_pred HHHHHHHHHHHH-----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 179 RMLTALGEAFEK-----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 179 ~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
...-.++.++.. .-+|..-..+|.-.....| +|.+-.+.+.......-...++...+..... |. -..
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~------L~g 363 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLAR-PR------LDG 363 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cc------ccc
Confidence 222233333332 2356666677777666666 5566666666666665667777776655543 22 111
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHH
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 299 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 299 (349)
....+-..|.++.+.|+.++|...|++++.+.++..+..+.....-
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4556677899999999999999999999999988877766665543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.62 E-value=22 Score=31.44 Aligned_cols=205 Identities=14% Similarity=0.007 Sum_probs=132.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
+-..+..+-.++.+...+.-....+.+++.... +-.+++.++.+|... ..++-...+++..+.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334455555566666666677788888888754 567888999999988 667778889999999888888888899888
Q ss_pred HHhhCHHHHHHHHHHHHccc-c--cc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH-HHHH
Q psy9209 189 EKQEKISEAMKCYNKSRAIG-D--AD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA-FKYL 261 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~-~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 261 (349)
.+ ++-.++..+|.+++... | .+ .+.|..+-. .--.+.+.-.....+.-..... ....+ +..+
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~--------~~~~Vl~qdv 211 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGE--------GRGSVLMQDV 211 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhcc--------chHHHHHHHH
Confidence 76 88999999999998652 2 11 223333321 1122333333333333222211 12233 3333
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH--------------------cCCCCCchhHHHHhhhcCCC
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK--------------------RQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~A~~~~~~a~~~~p~ 321 (349)
-.-|....++.+|++.+...++.+..+..++..+-.-++. -.++-+++.-|++.+..+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 3556667899999999999999988777777665544443 23445666677777766666
Q ss_pred CCCcc
Q psy9209 322 PPSTR 326 (349)
Q Consensus 322 ~~~~~ 326 (349)
+-..+
T Consensus 292 nFVfH 296 (711)
T COG1747 292 NFVFH 296 (711)
T ss_pred ceEEe
Confidence 54433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.5 Score=21.25 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAI 137 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~ 137 (349)
..+-..|.+.|++++|.+.|++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 344444555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=86.40 E-value=1.8 Score=36.92 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
+...+.+++.-+|+|..|++.++.. +++...-.....+-....++.+|-+|..+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888776543 11111001122334678899999999999999999999998753
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=85.62 E-value=24 Score=30.84 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEI 139 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 139 (349)
...+|......|+|+.|...|+.+.+-
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~D 237 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKD 237 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 467899999999999999999988774
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=85.58 E-value=39 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh
Q psy9209 216 FKLAKLYDKLNETEAAADLFMEFVS 240 (349)
Q Consensus 216 ~~l~~~~~~~~~~~~A~~~~~~~~~ 240 (349)
..|+.-+..++++-+|-+.....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4566667777777777777766655
|
|
| >KOG4279|consensus | Back alignment and domain information |
|---|
Probab=85.14 E-value=11 Score=34.94 Aligned_cols=187 Identities=15% Similarity=0.100 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHH---HhCCHHHHHHHHHHHHhcC-CCCh
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYE---ILRLPYYGLYYYKQAHMVR-PNDP 178 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~-~~~~ 178 (349)
.+++..++-..|....+|+.-+++.+..-.+ |+.. .+.+..+-++. +-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4667788888899999998888877665443 4221 11122222222 3577888888888877753 4456
Q ss_pred HHHHHHHHHHHH---------hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhcccccCCC
Q psy9209 179 RMLTALGEAFEK---------QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE-TEAAADLFMEFVSKLDTFAAP 248 (349)
Q Consensus 179 ~~~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 248 (349)
+.++.-|++|.. .+..+.|+.+|+++++..|.. ..=.+++.++...|+ ++...+.-.-.+.++.-.+ .
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~Llg-r 356 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLG-R 356 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhh-c
Confidence 677777777753 466788999999999998853 222344555444443 3333333222233221100 0
Q ss_pred CCCcchHHHHHHHHHHH---HHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 249 PDKTCGFFAFKYLANHH---LKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
...-.....|+..|..+ .-.+++.+|+..-++..++.|...-....++.+
T Consensus 357 KG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 357 KGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred cchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 01111223333333332 224789999999999998887654444444444
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=85.10 E-value=16 Score=31.14 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCL 66 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l 66 (349)
.++..+|..|...|+++.|+..|.++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhh
Confidence 355566666666666666666666643
|
|
| >TIGR02710 CRISPR-associated protein, TIGR02710 family | Back alignment and domain information |
|---|
Probab=83.26 E-value=28 Score=29.76 Aligned_cols=59 Identities=8% Similarity=-0.073 Sum_probs=41.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHH--HhcCCHHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH--LKANNLDTAYKCAQK 64 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~ 64 (349)
+++.+.+.++|..|..+|.++..+..+ ++....+..+..+..+| +..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~----~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLS----AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccC----hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 456778999999999999999865322 22222334555555554 667789999999986
|
Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=82.96 E-value=3.1 Score=20.59 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.|..+-..|.+.|++++|.+.|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566778888999999999999887643
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=82.74 E-value=13 Score=25.65 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNL---------------DYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
+..+|....+.+++-.++-.|++|+.+..+ ......+||..+...|+.+-.+++++-+-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 455666777777777777777777664221 12334567777777777777777765543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=82.44 E-value=15 Score=26.08 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=22.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHH
Q psy9209 157 LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202 (349)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (349)
.+.+...+.+++.++..++.++..+..+..+|.+. +..+.+.+++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34555555555555555555555555555555433 2333444443
|
|
| >KOG2063|consensus | Back alignment and domain information |
|---|
Probab=82.14 E-value=50 Score=31.84 Aligned_cols=171 Identities=12% Similarity=0.004 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhCCH--HHHHHHHHHHHhcCCCChH-------
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEIN----NLDYRAWYGLGQTYEILRLP--YYGLYYYKQAHMVRPNDPR------- 179 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~------- 179 (349)
+..++..|...|+.++|++.+.+..... +.....+-.+-..+...+.. +-..++-.-.++.+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5778899999999999999999988733 22333444444445555554 5666666666666654321
Q ss_pred ------HHHHHHHHHHHhhCHHHHHHHHHHHHccccc-cHHHHHHHHHHHHhc--------CcHHHHHHH--HHHHHhcc
Q psy9209 180 ------MLTALGEAFEKQEKISEAMKCYNKSRAIGDA-DGKALFKLAKLYDKL--------NETEAAADL--FMEFVSKL 242 (349)
Q Consensus 180 ------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~~~~~~ 242 (349)
.-.....-+......+-++.+++.++..+.. ....+..++..|... ++-+++.+. .++....-
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 0011222345667788899999999887654 334444444444321 222233333 22222221
Q ss_pred cccC-----CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 243 DTFA-----APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 243 ~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
+... ...........|...+.++.+.|+.++|+..+-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1100 0011111356677788888899999999888776655
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=82.06 E-value=9 Score=27.41 Aligned_cols=48 Identities=8% Similarity=-0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
.....+......|++.-|.++...++..+|++..+....+.++..+|.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 344555556666777777777777777777776666666666665553
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.95 E-value=6.5 Score=29.96 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=26.4
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 197 AMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 197 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
.++..++.+...| ++.++..++.++...|+.++|....+++....|
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444444455 455566666666666666666666666666555
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=80.99 E-value=48 Score=30.94 Aligned_cols=255 Identities=11% Similarity=-0.027 Sum_probs=120.8
Q ss_pred hhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 87 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 87 (349)
..|+..+|.+++.-.+ |..........-.-+++.+|.++...|+- ..+++...++...+....+-....++ +.
T Consensus 369 H~G~~~~~~~ll~pYL---P~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlG--La 441 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYL---PKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLG--LA 441 (929)
T ss_pred eccccchHHHHhhhhC---CccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhcc--ch
Confidence 3577778887776655 33211111111113688899888877764 78888888776554433322211122 22
Q ss_pred CCcchHHHHHHHHHHHh---hCccc--HHHHHHHHHHHHhcCChHHHHH-HHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 88 PDESSSQAVLYFQRALK---LNPNY--LGVWTLLGHEYMEMKNTNAAIQ-CYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~---~~~~~--~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
.+|.- -.+.|++.-. .+..- ..+-..+|.+....++. +|++ .+.-+-+..-....--..+|..+...|+-+
T Consensus 442 ~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe 518 (929)
T KOG2062|consen 442 GMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE 518 (929)
T ss_pred hcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh
Confidence 12322 2333443332 22221 12335566665555543 3333 333333222222222234556677778888
Q ss_pred HHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFME 237 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 237 (349)
+|..+.++++.-. ++ .-.+.++..|...|+..--...+.-++.-..++..-..-+|.-+....+++.-.....-
T Consensus 519 ~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~l 596 (929)
T KOG2062|consen 519 DADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSL 596 (929)
T ss_pred hhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHH
Confidence 8888888887543 33 23456677777777754443333333322222222222222222233444444443333
Q ss_pred HHhcc-cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 238 FVSKL-DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 238 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
..+.. |. -..-+-..||.++.-.|. .+|+..++-...
T Consensus 597 Lses~N~H--------VRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 597 LSESYNPH--------VRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred HhhhcChh--------hhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 22211 11 022333445555555554 356666665544
|
|
| >PHA02537 M terminase endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.93 E-value=25 Score=27.63 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=16.5
Q ss_pred HhhCcHHHHHHHHHHHHHh
Q psy9209 7 DKLNETEAAADLFMEFVSK 25 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~ 25 (349)
...|+++.|+++..-+|+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeccCHHHHHHHHHHHHHc
Confidence 4579999999999999964
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=80.11 E-value=19 Score=25.61 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=17.6
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME 122 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 122 (349)
+.....+.+++.++..++.++..+..+..+|..
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 445555555555555555445555555555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 349 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-08 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-08 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-07 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 7e-07 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 9e-06 | ||
| 3ma5_A | 100 | Crystal Structure Of The Tetratricopeptide Repeat D | 3e-04 | ||
| 2kcl_A | 99 | Solution Nmr Structure Of Tetratricopeptide Repeat | 3e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast Structural Genomics Consortium Target Srr115c. Length = 100 | Back alignment and structure |
|
| >pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain Protein Sru_0103 From Salinibacter Ruber, Northeast Structural Genomics Consortium (Nesg) Target Srr115c Length = 99 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 6e-32
Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 16/209 (7%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A YF ++ ++P + W H + + AI Y A + + + LG
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L Y + ++ + DP +L LG + + A+ + + +
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510
Query: 214 -------ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266
L Y KL +AA D + + A +A +L
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN---------VHTAIALVYL 561
Query: 267 KANNLDTAYKCAQKCLQHEETAEEAKSLL 295
A + L A LL
Sbjct: 562 HKKIPGLAITHLHESLAISPNEIMASDLL 590
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-17
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 7/138 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-------DYRA 146
A Y Q + L + LG + AI ++ A+ +
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518
Query: 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206
W LG Y L++ + Q ++ ND + TA+ + ++ A+ ++S A
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
Query: 207 IGDADGKALFKLAKLYDK 224
I + A L + ++
Sbjct: 579 ISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 7e-16
Identities = 34/280 (12%), Positives = 78/280 (27%), Gaps = 18/280 (6%)
Query: 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 63
++Y L+ + A + + E + AF L ++HL + +
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYE---------AFDQLVSNHLLTADEEWDLVLKL 258
Query: 64 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
+ + L + + E + + ++ +
Sbjct: 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318
Query: 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTA 183
+ + +EI+ + + + P A
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
+G + KISEA + ++KS + G A A + E + A + ++L
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY-TTAARLF 437
Query: 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283
+ +L H++ N+ A + Q
Sbjct: 438 -----QGT---HLPYLFLGMQHMQLGNILLANEYLQSSYA 469
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 10/157 (6%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ +L H++ N+ A + Q + + L +A + A+ +FQ
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK---SDMQTAINHFQ 499
Query: 101 RALKL-------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
AL L + W LGH Y ++K +AAI Q + ++ D +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
Y ++P + + ++ + PN+ L A E+
Sbjct: 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 9e-13
Identities = 39/280 (13%), Positives = 79/280 (28%), Gaps = 51/280 (18%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A L L + Y A CL + A +L + DE ++ +L
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAF-CLVKLYDWQGALNL-LGETNPFRKDEKNANKLLMQD 193
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL- 159
+KL + + L G Y + N + A +CY++A+ ++ Y A+ L + +
Sbjct: 194 GGIKLEAS---MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADE 250
Query: 160 ------------------PYYGLYY------------------YKQAHMVRPNDPRMLTA 183
+ Y Y + +L
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC 310
Query: 184 LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
+ + + + + K I + + E + + V
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-DRH 369
Query: 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283
P+K + A + ++L N + A + K
Sbjct: 370 -----PEKAVTWLA---VGIYYLCVNKISEARRYFSKSST 401
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-30
Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 24/242 (9%)
Query: 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSI--AQKRQPDESSSQAVLYFQRALKLNPNYL 110
N + + + K + + + + + + A Y +A L Y
Sbjct: 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH----ARRYLSKATTLEKTYG 125
Query: 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170
W GH + + A+ Y A ++ + +G Y + ++ QA
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185
Query: 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK---------SRAIGDADGKALFKLAKL 221
+ P DP ++ +G + + A K + + D L L +
Sbjct: 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245
Query: 222 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281
KL + A D + + + A+ + + H N + A
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNAS---------TYSAIGYIHSLMGNFENAVDYFHTA 296
Query: 282 LQ 283
L
Sbjct: 297 LG 298
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 4e-18
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 9/149 (6%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR------- 145
A +F +AL + P V +G + A + + A+E
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235
Query: 146 --AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
LG L+ L Y++QA ++ P + +A+G A+ ++
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 204 SRAIGDADGKALFKLAKLYDKLNETEAAA 232
+ + D ++ L + A
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 3e-17
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 1/139 (0%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
++ +P + + +E+ N + +++ + +W+ +G
Sbjct: 40 MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99
Query: 154 Y-EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG 212
Y + + Y +A + A G +F + + +AM Y + +
Sbjct: 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159
Query: 213 KALFKLAKLYDKLNETEAA 231
+ + Y N ++ A
Sbjct: 160 LPMLYIGLEYGLTNNSKLA 178
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 4e-15
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 14/172 (8%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQAVLYF 99
Y+ + NN A + + L + +A + + A +F
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT----AEKWF 216
Query: 100 QRALKLN---------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150
AL+ + + LGH ++K A+ +RQA+ + + + +
Sbjct: 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276
Query: 151 GQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
G + ++ + Y+ A +R +D +T LG E SEA +
Sbjct: 277 GYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 1/141 (0%)
Query: 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151
+ + ++ L V L + + + +E +
Sbjct: 4 NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63
Query: 152 QTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF-EKQEKISEAMKCYNKSRAIGDA 210
T L Y + + P++P A+G + K A + +K+ +
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT 123
Query: 211 DGKALFKLAKLYDKLNETEAA 231
G A + +E + A
Sbjct: 124 YGPAWIAYGHSFAVESEHDQA 144
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 64
+ + E + A F++ + K+ L + K A ++
Sbjct: 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261
Query: 65 CLQHEETAEEAKSLLRSIAQK-RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
L S + I + AV YF AL L + T+LGH
Sbjct: 262 ALVLIPQNASTYSAIGYIHSLMGNFEN----AVDYFHTALGLRRDDTFSVTMLGHCIEMY 317
Query: 124 KNTNAAIQCY 133
+ A
Sbjct: 318 IGDSEAYIGA 327
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 1e-21
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 6/191 (3%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ +L + A++ P W +L + M +T A ++ + ++ A LG+
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ +QA P P + LG A E + A Y ++ + +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
+L +L + A L + + + A FAF A L
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAV----AQGVGAVEPFAFLSEDASA--AEQLAC 180
Query: 274 AYKCAQKCLQH 284
A AQ
Sbjct: 181 ARTRAQAIAAS 191
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 19/111 (17%), Positives = 36/111 (32%)
Query: 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184
+ + R A+ D+ AW L + G ++ + P P + L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
G Q++ +EA ++ L + + EAAA +
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-21
Identities = 34/247 (13%), Positives = 78/247 (31%), Gaps = 6/247 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL-RSIAQKRQPDESSSQAVLYF 99
A+ K NN A + K + + + + + D + YF
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+ + G M+ + AIQ Y+ A++ + + +G +
Sbjct: 65 S-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+ Y ++ DP++ LG+A+ ++ +A + K + A
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183
Query: 220 KLY---DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK 276
+ D + A + + + ++ K A +Y+A ++ + A
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLI-EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242
Query: 277 CAQKCLQ 283
+ L
Sbjct: 243 AWKNILA 249
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 24/199 (12%), Positives = 55/199 (27%), Gaps = 16/199 (8%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYF 99
F+Y +K A + Q + + T + + K A+ Y
Sbjct: 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL----AIQYM 131
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
++ ++ V+ LG Y K A + + +E+ Y + +
Sbjct: 132 EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191
Query: 160 PYYG---LYYYKQA--------HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208
YY++ + + + +A + A+
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251
Query: 209 DADGKALFKLAKLYDKLNE 227
+ KA+ L + +
Sbjct: 252 PTNKKAIDGLKMKLEHHHH 270
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 38/198 (19%), Positives = 75/198 (37%), Gaps = 5/198 (2%)
Query: 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQKRQPDESSSQAVL 97
L++ H + LD + + ++ AE +L ++ Q E A+
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIE 88
Query: 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157
+++ AL+L P+++ + L + + A+Q Y A++ N Y LG + L
Sbjct: 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL 148
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217
Y +A +PN + LG F Q +I A+ + K+ + A
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 218 LAKLYDKLNETEAAADLF 235
L + + + A +
Sbjct: 209 LGNVLKEARIFDRAVAAY 226
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 36/142 (25%), Positives = 56/142 (39%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV + RAL L+PN+ V L Y E + AI YR+AIE+ A+ L
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ Y A + P L L +Q I EA++ Y K+ +
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A LA + + + + A +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHY 362
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 26/142 (18%), Positives = 49/142 (34%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A + + + P+ GV LL + + + + + AI+ N L A+ LG
Sbjct: 17 AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV 76
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y+ + +Y+ A ++P+ L A + A++ Y +
Sbjct: 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
L L L E A +
Sbjct: 137 VRSDLGNLLKALGRLEEAKACY 158
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 3e-19
Identities = 24/134 (17%), Positives = 51/134 (38%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ ++RA++L P++ + L + E + A CY A+ + + L
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ Y++A V P + L ++Q K+ EA+ Y ++ I
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
Query: 214 ALFKLAKLYDKLNE 227
A + ++ +
Sbjct: 375 AYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 18/120 (15%), Positives = 38/120 (31%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
L H + + AA + Q + L + R ++ A P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ LG ++++ ++ EA++ Y + + LA + E A +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 9e-20
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 2/126 (1%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
L+ + L LG + + A + ++ +++ D R + GLG + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALF 216
L L Y ++ N+PR E + + A + +RA+ +AL
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 217 KLAKLY 222
A
Sbjct: 127 ARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-12
Identities = 14/94 (14%), Positives = 26/94 (27%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A FQ L+ + LG + A+Q Y ++ + R + +
Sbjct: 36 DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187
+ L + A + P A
Sbjct: 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 9e-20
Identities = 22/199 (11%), Positives = 55/199 (27%), Gaps = 16/199 (8%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS----------- 93
+ ++A A ++ + E + ++
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 94 --QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151
+A L+++ L+ PN + + A++ Y + +++ + A LG
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129
Query: 152 QTYEILRLPYYG-LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--G 208
Y + L + G + + +A K
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189
Query: 209 DADGKALFKLAKLYDKLNE 227
K L K+ ++ ++N
Sbjct: 190 TEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 24/197 (12%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEIN----------------NLDYRAWYGLGQTYEILRL 159
+E A+ +RQ I +N + + L Y+ R
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+YK+ PN+ L A E + + +A++ Y K + + A L
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129
Query: 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279
Y E E T +A L + A Q
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQ--------YARYRDGLSKLFTTRYEKARNSLQ 181
Query: 280 KCLQHEETAEEAKSLLR 296
K + + E K+L +
Sbjct: 182 KVILRFPSTEAQKTLDK 198
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-19
Identities = 39/291 (13%), Positives = 89/291 (30%), Gaps = 38/291 (13%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS-------- 92
A + LK LD A +K L+ + +E K + + +
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132
Query: 93 ----SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148
+ A+ + + L++ + L +++ AI + A ++ + + A+Y
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 192
Query: 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL------------GEAFEKQEKISE 196
+ Y L L ++ + + R E + + ++
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
Query: 197 AMKCYNKSRAI----GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKT 252
A Y + ++ ++ + K + A + E +
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN----- 307
Query: 253 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 303
A K A +L D A + + +H E ++ + L AQ+
Sbjct: 308 ----ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE-KAQRLL 353
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-17
Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 24/220 (10%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ F A+ +P+ + ++ M + AA+ + I + A G
Sbjct: 21 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80
Query: 154 Y--------------EILRL-PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198
++L+ P ++ +V+ ++ + L + + A+
Sbjct: 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140
Query: 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAF 258
+K + D + A+ + K E A SKL D T AF
Sbjct: 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA-ASKLK-----SDNT---EAF 191
Query: 259 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298
++ + + + + + ++CL+ ++ + + + +
Sbjct: 192 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 6e-16
Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 19/205 (9%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ A +K A + + + EA S + D ++ +
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF-YKISTLYYQLGD--HELSLSEVR 212
Query: 101 RALKLNPNYLGVWTLL------------GHEYMEMKNTNAAIQCYRQAIEIN----NLDY 144
LKL+ ++ + E + A Y ++
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
R+ + + P + + + P++ L EA+ +E EA++ Y +
Sbjct: 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332
Query: 205 RAIGDADGKALFKLAKLYDKLNETE 229
+ + D + L K L +++
Sbjct: 333 QEHNENDQQIREGLEKAQRLLKQSQ 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 16/110 (14%), Positives = 38/110 (34%)
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM 172
LG + + A+ + A++ + +Y A+Y + + L +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222
++ + G KQ K+ EA + K ++ + ++L
Sbjct: 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 88.3 bits (218), Expect = 2e-19
Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 5/242 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQAVLYF 99
+ LAN + N++ A + +K L+ A S L S+ Q++ + E A++++
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHY 66
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+ A++++P + ++ +G+ EM++ A+QCY +AI+IN A L ++
Sbjct: 67 KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+ Y+ A ++P+ P L + ++ + K +I + +
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Query: 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279
+ + +++ + L L Y +
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246
Query: 280 KC 281
Sbjct: 247 FG 248
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 85.6 bits (211), Expect = 2e-18
Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 3/192 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV +++AL++ P + + L + A+ Y++AI I+ A+ +G T
Sbjct: 27 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ ++ L Y +A + P + L + I EA+ Y + +
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKL-DTFAAPPDKTCGFFAFKYLANHHLKANNLD 272
A LA + + + + VS + D + H
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSH--GFRKA 204
Query: 273 TAYKCAQKCLQH 284
A + CL
Sbjct: 205 IAERHGNLCLDK 216
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 8e-15
Identities = 26/131 (19%), Positives = 50/131 (38%)
Query: 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGL 164
P + L + E N A++ YR+A+E+ A L + L
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 165 YYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
+YK+A + P + +G ++ + + A++CY ++ I A A LA ++
Sbjct: 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
Query: 225 LNETEAAADLF 235
A +
Sbjct: 124 SGNIPEAIASY 134
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 9e-06
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 175 PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234
P L L +Q I EA++ Y K+ + A LA + + + + A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294
+ E + TFA A+ + N + ++ A +C + +Q +A S
Sbjct: 66 YKEAIRISPTFAD---------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 295 LRSIAQKRQPDESSSQPMECAVVLDP 320
L SI + + A+ L P
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKP 142
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 3e-19
Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 4/194 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ ++ N+ A++ +K ++ + +A + E YF
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTE----YYNYFD 294
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+ALKL+ N V+ G ++N + A + + +A E++ + + L
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ +A P P + E + +A+K Y+ + + + +A
Sbjct: 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414
Query: 221 LYDKLNETEAAADL 234
L K +
Sbjct: 415 LVGKATLLTRNPTV 428
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 10/190 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + KL G + A + ++AIE+ ++ +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALI 279
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y+ +A + N+ + G+ + +A K ++K++ + +
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273
+LA L + N+ + LF E K + A N+ D
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---------VPNFFAEILTDKNDFDK 390
Query: 274 AYKCAQKCLQ 283
A K ++
Sbjct: 391 ALKQYDLAIE 400
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 12/176 (6%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ + + N D A K K + + + R+ F
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ-LACLAYRE--NKFDDCETLFS 362
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
A + P V + + + A++ Y AIE+ N + G+ L
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422
Query: 161 YYGLY---------YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
++A + P + L + +QE I EA+ + +S +
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 25/201 (12%), Positives = 60/201 (29%), Gaps = 5/201 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ Y+ AL+L + + ++ L Y+ + + ++ +A+E+ +
Sbjct: 24 DAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82
Query: 154 YEILRLPYYGLYYYKQAHMV---RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210
E L ++ + + + K+ E + + A
Sbjct: 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142
Query: 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270
K K + + + F TF A D++ +L +
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRS 201
Query: 271 LDTAYKCAQKCLQHEETAEEA 291
++ K + + EE
Sbjct: 202 PESYDKADESFTKAARLFEEQ 222
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 4/149 (2%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
Y G+++ K + AI+ Y A+E+ D + L Y + +
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVE 60
Query: 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD---ADGKALFKLAKLY 222
+A ++P+ ++L A E K ++AM + GD A + + +
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
Query: 223 DKLNETEAAADLFMEFVSKLDTFAAPPDK 251
+++ + + + P K
Sbjct: 121 QAMSKLKEKFGDIDTATATPTELSTQPAK 149
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 5e-19
Identities = 23/138 (16%), Positives = 53/138 (38%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A F +A++ N + + + A+ Y +A+E+++ A+YG G
Sbjct: 41 KAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y + + +++A + + LG K E+ A+ ++ + + D +
Sbjct: 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160
Query: 214 ALFKLAKLYDKLNETEAA 231
A F+ + A
Sbjct: 161 ARFQFGMCLANEGMLDEA 178
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-17
Identities = 25/138 (18%), Positives = 50/138 (36%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ ++ +AL+L+ + + G+ Y+ + A + +A+ + +Y LG
Sbjct: 75 RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
L P L Y ++A + ND G + + EA+ +
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 214 ALFKLAKLYDKLNETEAA 231
A + Y E A
Sbjct: 195 AFYNAGVTYAYKENREKA 212
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-16
Identities = 23/134 (17%), Positives = 50/134 (37%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A F++AL+ ++ +LG ++++ A+ ++A+E+N D A + G
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC 168
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L + P G + +E +A++ +K+ I
Sbjct: 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228
Query: 214 ALFKLAKLYDKLNE 227
AL L +
Sbjct: 229 ALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-14
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 4/142 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEY----MEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
+ + + L P + ++ G + E + A + + +AIE N D +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L +Y +A + + G + +E EA + K+ G
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 210 ADGKALFKLAKLYDKLNETEAA 231
+G + L + KL + + A
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLA 144
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 7e-19
Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 11/205 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
QA + ++AL+++P+ L + A + YR+A+ ++ + R G
Sbjct: 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114
Query: 154 YEILRLPYYGLYYYKQA--HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211
+ +A + P R+ LG + +K ++A + + KS +
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174
Query: 212 GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271
++A L K E A + F A + +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR---------SLLLGIRLAKVFEDR 225
Query: 272 DTAYKCAQKCLQHEETAEEAKSLLR 296
DTA + + + E +
Sbjct: 226 DTAASYGLQLKRLYPGSLEYQEFQA 250
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-15
Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 15/217 (6%)
Query: 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148
S + K + LG Y++ NT A R+A+EI+ A
Sbjct: 16 PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75
Query: 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208
L ++ P Y++A + R+L G +Q++ EA + + A
Sbjct: 76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE--ASQ 133
Query: 209 DAD----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264
D + L + ++ + A + F + + + +A+
Sbjct: 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS---------VALEMADL 184
Query: 265 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301
K A + Q + L +A+
Sbjct: 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 7e-19
Identities = 51/325 (15%), Positives = 101/325 (31%), Gaps = 32/325 (9%)
Query: 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG-FFAFKYLANHHLKANNLDTAYKCAQ 63
+Y + + + F++P + N + A C +
Sbjct: 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 64 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123
K L+ + E S L + + S A+ ++A++LNP+ + LL + +M
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 124 KNTN----AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR 179
+ + +A+E + Y P + K+A PN+
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282
Query: 180 MLTALGEAFEKQ-------------------EKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ +G + + E I A+ K+ D + LA
Sbjct: 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Query: 221 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280
L+ ++ E A F + SK +Y + D A +
Sbjct: 343 LHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397
Query: 281 CLQHEET---AEEAKSLLRSIAQKR 302
++ + E+ K L+ IA+ R
Sbjct: 398 GVKINQKSREKEKMKDKLQKIAKMR 422
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 8e-16
Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 41/285 (14%)
Query: 51 KANNLDTAYKCAQKCLQHEETAEEAKSLL-RSIAQKRQPDESSSQAVLYFQRALKLNPNY 109
A ++ ++ + K LL + + R+ E + + AL+ P
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY--------------- 154
V Y + AI+ ++A+E + +G Y
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306
Query: 155 ----EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK--SRAIG 208
++L L + + + K+A N R+ + L ++ EA + K S+ +
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366
Query: 209 DAD--------GKALFKLAKLYD----------KLNETEAAADLFMEFVSKLDTFAAPPD 250
G K D K+N+ + + + K+ +
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426
Query: 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295
A LA + A + +++ L+ A S
Sbjct: 427 GADSE-ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 9e-09
Identities = 18/148 (12%), Positives = 41/148 (27%), Gaps = 18/148 (12%)
Query: 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 64
L+ ++ E A F + SK +Y + D A +
Sbjct: 343 LHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397
Query: 65 CLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK 124
++ + + E + + + + + L N +L +
Sbjct: 398 GVKINQKSREKEKMKDKLQK-------------IAKMRLSKNGADSEALHVLAFLQELNE 444
Query: 125 NTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A + + +E +L A G+
Sbjct: 445 KMQQADEDSERGLESGSLIPSASSWNGE 472
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 9e-19
Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 4/201 (1%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A Y H NNL A Q+ + T L ++A K E +FQ
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQE----FFKFFQ 300
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+A+ LNP Y + G Y +++ A + +++A +N + + L
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
++ + + P P + T E + A+K Y+ ++ + + K +
Sbjct: 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420
Query: 221 LYDKLNETEAAADLFMEFVSK 241
L K + + +
Sbjct: 421 LIGKATILARQSSQDPTQLDE 441
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 1e-17
Identities = 41/254 (16%), Positives = 81/254 (31%), Gaps = 11/254 (4%)
Query: 38 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVL 97
G F + ++N DTAY LQ +A + L+ + + + +
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV-ANDLLTKSTDMYHSLLS 230
Query: 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157
L N G + N A +++I ++ ++ L T
Sbjct: 231 ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADK 289
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFK 217
++++A + P P G+ + + A + + K++++ + +
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349
Query: 218 LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKC 277
LA L K + + F E K T + A + DTA K
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEILTDRGDFDTAIKQ 400
Query: 278 AQKCLQHEETAEEA 291
+ EE E+
Sbjct: 401 YDIAKRLEEVQEKI 414
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 24/223 (10%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ + + + A + QK L + +Q +++ +F
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL-ACLLYKQ--GKFTESEAFFN 368
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
P V T + + + AI+ Y A + + + G+G +
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428
Query: 161 YYG----------------LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
+ +A + P + L + + EKI EA++ + S
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488
Query: 205 RAIGDADGKA-----LFKLAKLYDKLNETEAAADLFMEFVSKL 242
+ + + AK+ +L + +++
Sbjct: 489 AILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARY 531
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 35/235 (14%), Positives = 67/235 (28%), Gaps = 39/235 (16%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q A++L+PN ++ + Y+ + I+ +A+EI +A
Sbjct: 43 EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102
Query: 154 YEILR-----------------------LPYYGLYYYKQAHMVRPNDPRM-LTALGEAFE 189
E L P KQA V + +
Sbjct: 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162
Query: 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAK------LYDKLNETEA----AADLFMEFV 239
++ ++ + + + + A L + T+ A DL +
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222
Query: 240 SKLDTFAAPPDKT-----CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE 289
+ + A Y H NNL A Q+ + T
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 1e-18
Identities = 16/144 (11%), Positives = 47/144 (32%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+++ + L L + A ++ +++ D R + GLG
Sbjct: 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ + ++ Y ++ +PR E + +++EA ++ + +
Sbjct: 65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124
Query: 214 ALFKLAKLYDKLNETEAAADLFME 237
++ L + ++ E
Sbjct: 125 FXELSTRVSSMLEAIKLKKEMKHE 148
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-18
Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 6/189 (3%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+K ++ + N +K +++ + + + + R ++ + +
Sbjct: 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK----ELKKAE 129
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+NP L G EY + A++ Y + I+ D R + L
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF 189
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKL 218
+ +A PN R A ++ + A++ + +R +G + ++
Sbjct: 190 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249
Query: 219 AKLYDKLNE 227
+LY K ++
Sbjct: 250 DQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-17
Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 5/191 (2%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
K N KA D A + K + + + + +K + + A+
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYET----AISTLN 62
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
A++ + ++ + + N + ++ IE + LR
Sbjct: 63 DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-KSLTEHRTADILTKLRNA 121
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
L + V P G+ + + A+K Y + D + A
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA 181
Query: 221 LYDKLNETEAA 231
KL A
Sbjct: 182 ALAKLMSFPEA 192
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 19/177 (10%), Positives = 50/177 (28%), Gaps = 11/177 (6%)
Query: 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166
+ G+++ + + + AI+ Y +A E++ D +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60
Query: 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226
A + ++F + + K+ + A + KL
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY-YQKSLTEHRTADILTKLR 119
Query: 227 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283
E E + ++ P+K + + ++ A K + ++
Sbjct: 120 NAEKELKKA-EAEAYVN-----PEK---AEEARLEGKEYFTKSDWPNAVKAYTEMIK 167
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-18
Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 11/206 (5%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
QA + ALK +P W + Y +K + A + +RQA+ I G
Sbjct: 26 QATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85
Query: 154 -YEILRLPYYGLYYYKQA--HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210
L P + Y+ +A P G KQ + A +S A
Sbjct: 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145
Query: 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270
A +LA+ + A F ++ S+++ A N
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD--------DLLLGWKIAKALGN 197
Query: 271 LDTAYKCAQKCLQHEETAEEAKSLLR 296
AY+ + + +EE +++L
Sbjct: 198 AQAAYEYEAQLQANFPYSEELQTVLT 223
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 13/204 (6%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
+ T L EYM ++ A A++ + + AW + Y+ L++
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
Query: 166 YYKQAHMVRPNDPRMLTALGEAF-EKQEKISEAMKCYNK--SRAIGDADGKALFKLAKLY 222
++QA ++P+ + G + + +E+M ++K + A
Sbjct: 64 SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123
Query: 223 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282
K + A ++ F AFK LA + A L A +K
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPP---------AFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 283 QHEETAEEAKSLLRSIAQKRQPDE 306
E + LL +
Sbjct: 175 SRVEVLQAD-DLLLGWKIAKALGN 197
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 37/283 (13%), Positives = 86/283 (30%), Gaps = 32/283 (11%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA--QKRQPDESSSQAVLY 98
+ A + + + A K L+ E + LR+ ++ +P + A+
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR-ELRAECFIKEGEPRK----AISD 199
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+ A KL + + + Y ++ + ++ R+ ++++ R + Q ++ +
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 159 LPYYGLYY------------YKQAHMVRPNDP----RMLTALGEAFEKQEKISEAMKCYN 202
L Y+ P+ R + F K EK EA++ +
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262
+ + + AL A+ Y + A + + + L
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ---------IREGLE 370
Query: 263 NHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305
++ +E R +A + PD
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 5e-16
Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 24/221 (10%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+ A+ F A+ +P+ + ++ M + AA+ + I++ A G
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 153 TY--------------EILRL-PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
++L+ P Q+ +++ ++ + L + + A
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162
Query: 198 MKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA 257
+ +K + D + A+ + K E A SKL D T A
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA-ASKLK-----NDNT---EA 213
Query: 258 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298
F ++ + + + + + ++CL+ ++ + + + +
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 9e-13
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 43 KYLANHHLKANNLDTAYKCAQKCLQHE-ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQR 101
A ++ A + ++ E AE I DE +A+
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161
L++ P+ + Y+ + + AIQ Y A E N D + GL + +L+
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380
Query: 162 YGLYYY------------------KQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
YY K A P++ + +A +K I+ A
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 32/225 (14%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLL---------------GHEYMEMKNTNAAIQCYRQAIE 138
+A F++ LK NP+ + AAI + +E
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171
Query: 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198
+ D + + P + K A ++ ++ + + + ++
Sbjct: 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231
Query: 199 KCYNKSRAI--GDADGKALFKLAKLYDKLNET----------EAAADLFMEFVSKLDTFA 246
+ + A +K K +KL E+ A + V K +
Sbjct: 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES-VMKTE--- 287
Query: 247 APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291
P + + + + K A + + LQ E A
Sbjct: 288 -PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-17
Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 12/149 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ F+RALK NP L +++ N A++ + + + L +
Sbjct: 23 AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82
Query: 154 YEILRLPYYGLY-----------YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
Y L K A V P + G + + +A
Sbjct: 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAA 231
++ A+ D + LA+LY + + A
Sbjct: 143 QALALED-TPEIRSALAELYLSMGRLDEA 170
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 6e-15
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 1/128 (0%)
Query: 76 KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQ 135
+L R + + QA+ + A ++NP Y + G Y + + A +Q
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 136 AIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195
A+ + + L + Y + L Y +A P D + A + K
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202
Query: 196 EAMKCYNK 203
EA +
Sbjct: 203 EAARAAAL 210
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 12/149 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT-----------NAAIQCYRQAIEINNL 142
A+ + + P YLG + +L Y+ + A+ + A +N
Sbjct: 57 PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116
Query: 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
G Y +L KQA + P + +AL E + ++ EA+ Y
Sbjct: 117 YAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYA 175
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAA 231
K+ D + A + E A
Sbjct: 176 KALEQAPKDLDLRVRYASALLLKGKAEEA 204
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 11/127 (8%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
LG + + +AA+ + +A++ N D A Y L +T L L L K P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 176 NDPRMLTALGEAFEK-----------QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
L EA+ + + +A+ + + + +Y
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Query: 225 LNETEAA 231
L E + A
Sbjct: 131 LGERDKA 137
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
+A+ + +AL+ P L + + A + +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 3e-17
Identities = 23/197 (11%), Positives = 53/197 (26%), Gaps = 3/197 (1%)
Query: 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL-RSIAQKRQPDESSSQAVLY 98
K + A A++ A T E+ ++ ++ E+ + +
Sbjct: 37 QLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQAL--ETVQRLLPV 94
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+A L P + ++ + QA + A + L
Sbjct: 95 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
L QAH + P + + G + E + + ++ + A+
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214
Query: 219 AKLYDKLNETEAAADLF 235
L + +
Sbjct: 215 GGGKQALETVQRLLPVL 231
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 17/141 (12%), Positives = 37/141 (26%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
+ +A L P + G ++ + QA + A
Sbjct: 227 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214
+ L L QAH + P + + G + E + + ++ + A
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Query: 215 LFKLAKLYDKLNETEAAADLF 235
+ L + +
Sbjct: 347 IASHDGGKQALETVQRLLPVL 367
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 17/138 (12%), Positives = 36/138 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + ++ + QA + A G
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + + E + + ++ +
Sbjct: 388 KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 447
Query: 214 ALFKLAKLYDKLNETEAA 231
A+ L A
Sbjct: 448 AIASNGGGRPALESIVAQ 465
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 4e-16
Identities = 16/138 (11%), Positives = 36/138 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + ++ + QA + A G
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + + E + + ++ +
Sbjct: 320 KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 379
Query: 214 ALFKLAKLYDKLNETEAA 231
A+ L +
Sbjct: 380 AIASNGGGKQALETVQRL 397
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 17/138 (12%), Positives = 37/138 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + G ++ + QA + A
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + G + E + + ++ +
Sbjct: 354 KQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVV 413
Query: 214 ALFKLAKLYDKLNETEAA 231
A+ L +
Sbjct: 414 AIASHDGGKQALETVQRL 431
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 25/189 (13%), Positives = 49/189 (25%), Gaps = 16/189 (8%)
Query: 58 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD---------------ESSSQAVLYFQRA 102
A Q ET + +L A P+ E+ + + +A
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQ-AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA 200
Query: 103 LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162
L P + G ++ + QA + A G + L
Sbjct: 201 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 260
Query: 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222
L QAH + P + + + E + + ++ + A+
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320
Query: 223 DKLNETEAA 231
L +
Sbjct: 321 QALETVQRL 329
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 17/114 (14%), Positives = 32/114 (28%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + G ++ + QA + A
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ L L QAH + P + + G E I + + + A
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 5/163 (3%)
Query: 78 LLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQA- 136
L + + +A+L L+ P L LL A+ +R A
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60
Query: 137 ----IEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192
+ + A + L L QAH + P + + + E
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ + ++ + A+ L +A +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR-AWYGLG 151
+ + +A L P + G +++ A + A+ D+ A LG
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLG 488
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 3e-17
Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
++A L F+ + P W LG E + AI A ++ D L
Sbjct: 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97
Query: 153 TYE---------------ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
++ +L P Y D + + F + E
Sbjct: 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157
Query: 198 MKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ + + D + L LY+ N ++AA
Sbjct: 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 12/175 (6%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS------- 93
LA H +N + A + L + E+ S+ S
Sbjct: 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150
Query: 94 -----QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY 148
+ AL++NPN + LG Y N ++A R+A+E+ D + W
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN 210
Query: 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
LG T P L Y +A + P R++ + ++ + A K +
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A +RA++L P+ +W LG A+ Y +A++IN R Y + +
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP------------RMLTALGEAFEKQEKISEAMKCY 201
Y + +A ++ M + Y
Sbjct: 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309
Query: 202 NK 203
+
Sbjct: 310 AQ 311
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 17/110 (15%), Positives = 30/110 (27%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
Q + Y G +++ N A + + AW LG T
Sbjct: 5 QNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLT 64
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
+ A M+ P D + AL + + + A+
Sbjct: 65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 4e-17
Identities = 23/138 (16%), Positives = 54/138 (39%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
QAV+ ++ + + V LG Y++ + + +++ + + LG T
Sbjct: 26 QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y ++ + + P + + LG A + + EA+ + + + +GK
Sbjct: 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145
Query: 214 ALFKLAKLYDKLNETEAA 231
+A Y+++ E A
Sbjct: 146 VHRAIAFSYEQMGRHEEA 163
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 76.7 bits (190), Expect = 6e-17
Identities = 24/114 (21%), Positives = 57/114 (50%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ +R+L P+ + V T+LG Y++++ + A+ + E N +++ + LG
Sbjct: 60 RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ L + +K A +RPN+ ++ A+ ++E+ + EA+ + K+ +
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 5e-12
Identities = 20/129 (15%), Positives = 43/129 (33%)
Query: 103 LKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162
+ + + G + + + A+ Q + + D LG Y
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222
G +++ P++ ++ T LG + + +K A+ K + F+L
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120
Query: 223 DKLNETEAA 231
D L + A
Sbjct: 121 DNLGRFDEA 129
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 1e-10
Identities = 15/84 (17%), Positives = 33/84 (39%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
AV + + NP V LG + + AI ++ A+ + + + + +
Sbjct: 94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153
Query: 154 YEILRLPYYGLYYYKQAHMVRPND 177
YE + L ++K+A+ +
Sbjct: 154 YEQMGRHEEALPHFKKANELDEGA 177
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 8e-08
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAW 147
+A+ F+ AL L PN V + Y +M A+ +++A E++
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 2e-16
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+P W LG+ Y + + + AI+ Y++A+E++ AWY LG
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
Y + YY++A + P LG A+ KQ EA++ Y K+ +
Sbjct: 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 8e-10
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
LG+ Y + + + AI+ Y++A+E++ AWY LG Y + YY++A + P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
LG A+ KQ EA++ Y K+ + +A + L Y K + + A
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 46.6 bits (112), Expect = 1e-06
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
A+ Y+Q+AL+L+P W LG+ Y + + + AI+ Y++A+E++
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 4e-16
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
+ + + + +++ A +R + + GL Y+I
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
Y A + ND + G+ + + +A +C+ I ++ + L
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL--VIQHSNDEKLKIK 142
Query: 219 AKLY 222
A+ Y
Sbjct: 143 AQSY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 2e-10
Identities = 13/85 (15%), Positives = 27/85 (31%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A ++F+ + + L Y + A Y A + DY + GQ
Sbjct: 54 EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP 178
L+ P ++ ++
Sbjct: 114 QLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-10
Identities = 13/103 (12%), Positives = 33/103 (32%)
Query: 133 YRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192
+ I + Y + +++ + + + L ++ +E
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ +A Y + A+G D +F + +L A + F
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 6e-16
Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
Query: 70 ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAA 129
+ R + ++ + Q ++ NP W LLG Y+ + + +
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
Query: 130 IQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY---GLYYYKQAHMVRPNDPRMLTALGE 186
+ YRQA+++ + + L + +A + N+ L L
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123
Query: 187 AFEKQEKISEAMKCYNKSRAIGDAD 211
Q ++A++ + K +
Sbjct: 124 DAFMQANYAQAIELWQKVMDLNSPR 148
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-09
Identities = 20/119 (16%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ L ++L N+ + ++ LQ E + L ++ + ++Q
Sbjct: 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMID 105
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+AL L+ N + LL + N AI+ +++ +++N+ L ++ + +L
Sbjct: 106 KALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI-NRTQLVESINMAKL 163
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 12/141 (8%)
Query: 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY--- 222
+ P + LGE + Q S ++ Y ++ + + + LA +
Sbjct: 32 ALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91
Query: 223 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282
+ T + + LD + T A LA+ N A + QK +
Sbjct: 92 ASQHMTAQTRAMIDK-ALALD----SNEIT----ALMLLASDAFMQANYAQAIELWQKVM 142
Query: 283 QHEETAEEAKSLLRSIAQKRQ 303
L+ SI +
Sbjct: 143 DLNSPRINRTQLVESINMAKL 163
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 2e-15
Identities = 32/211 (15%), Positives = 74/211 (35%), Gaps = 16/211 (7%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL---LRSIAQKRQPDESSS--QA 95
A+ L + K ++ +A+ C L H + ++L LR + + S +
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 96 VLYFQRALKLNPNYLGVWTLLGHEYM--------EMKNTNAAIQCYRQAIEIN---NLDY 144
V + A++++ W +LG+ Y+ K + A+ Y QA +++ + +
Sbjct: 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258
Query: 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204
++ L + QA + P P + E +++ ++ K+
Sbjct: 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
Query: 205 RAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ + A L + +A
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQ 349
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 3e-15
Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 23/203 (11%)
Query: 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGV 112
++ + ++ L + +A +L+ A PD S +A + +A+KL P +
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQA-LMLKGKALNVTPDYSP-EAEVLLSKAVKLEPELVEA 139
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG--------- 163
W LG Y + + +A C+ A+ + + L L+
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAF--------EKQEKISEAMKCYNKSRAIGD---ADG 212
+ K A + D R LG A+ + + +A+ Y ++ + ++
Sbjct: 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258
Query: 213 KALFKLAKLYDKLNETEAAADLF 235
A L+ A + F
Sbjct: 259 DLHLNRATLHKYEESYGEALEGF 281
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 3e-15
Identities = 17/146 (11%), Positives = 40/146 (27%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + +A L P + ++ + QA + A
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325
Query: 210 ADGKALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVL 351
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 5e-14
Identities = 16/142 (11%), Positives = 39/142 (27%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P+ + G ++ + QA + + A
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P + + + E + + ++ +
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 669 AIASNGGGKQALETVQRLLPVL 690
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 2e-12
Identities = 18/142 (12%), Positives = 41/142 (28%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P+ + G ++ + QA + A
Sbjct: 651 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGG 710
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P+ + + G + E + + ++ + A
Sbjct: 711 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 771 AIASNIGGKQALETVQRLLPVL 792
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 17/142 (11%), Positives = 41/142 (28%), Gaps = 1/142 (0%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P+ + G ++ + QA + A G
Sbjct: 346 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK 405
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ + L QAH + P+ + + + E + + ++ + A
Sbjct: 406 QALETVQ-RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 465 AIASHDGGKQALETVQQLLPVL 486
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 4e-12
Identities = 18/154 (11%), Positives = 40/154 (25%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
Q + +A L P+ + + + QA + A G
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 541 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600
Query: 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA 247
A+ L + + +
Sbjct: 601 AIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV 634
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-11
Identities = 15/142 (10%), Positives = 37/142 (26%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + + L P + ++ + QA + A
Sbjct: 447 RLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 567 AIASNGGGKQALETVQRLLPVL 588
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-11
Identities = 16/144 (11%), Positives = 38/144 (26%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + +A L + ++ + QA + A
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L L QAH + P+ + + G + E + + ++ +
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698
Query: 210 ADGKALFKLAKLYDKLNETEAAAD 233
A+ L +
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLP 722
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 7e-11
Identities = 17/189 (8%), Positives = 47/189 (24%), Gaps = 6/189 (3%)
Query: 53 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ------KRQPDESSSQAVLYFQRALKLN 106
+ + + + +A L +Q E+ + + +A L
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLT 425
Query: 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYY 166
P+ + ++ + Q + A + L L
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPV 485
Query: 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226
QAH + P+ + + + + + ++ + A+ L
Sbjct: 486 LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 545
Query: 227 ETEAAADLF 235
+ +
Sbjct: 546 TVQRLLPVL 554
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 6e-09
Identities = 17/146 (11%), Positives = 38/146 (26%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + +A L + ++ + QA + A
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
G + L L QAH + P + + + E + + + +
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 210 ADGKALFKLAKLYDKLNETEAAADLF 235
A A+ L + +
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVL 826
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 6e-06
Identities = 13/142 (9%), Positives = 34/142 (23%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ + +A L P + ++ + Q + A
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
+ L L QAH + + + + + E + + + +
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872
Query: 214 ALFKLAKLYDKLNETEAAADLF 235
A+ L + +
Sbjct: 873 AIASNIGGKQALETVQRLLPVL 894
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 7e-04
Identities = 12/130 (9%), Positives = 32/130 (24%)
Query: 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149
E+ + + + L + ++ + QA + A
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842
Query: 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD 209
+ L L Q H + P+ + + + E + + + +
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902
Query: 210 ADGKALFKLA 219
A+
Sbjct: 903 DQVVAIASNG 912
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 6e-15
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 13/193 (6%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A F +AL + P+ V+ LG + N +AA + + +E++ A G
Sbjct: 61 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA---FEKQEKISEAMKCYNKSRAIGDA 210
+ PNDP L A ++++ + + KS
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180
Query: 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270
F L + ++ AD + L + YL ++L +
Sbjct: 181 WNIVEFYLGNISEQTLMERLKADA--TDNTSLA-----EHLS---ETNFYLGKYYLSLGD 230
Query: 271 LDTAYKCAQKCLQ 283
LD+A + +
Sbjct: 231 LDSATALFKLAVA 243
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-13
Identities = 19/135 (14%), Positives = 30/135 (22%)
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+ + G Y + A + QA+ I + LG
Sbjct: 33 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+ + P G A + A D L
Sbjct: 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152
Query: 220 KLYDKLNETEAAADL 234
KL+E +A L
Sbjct: 153 LAEQKLDEKQAKEVL 167
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-09
Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 5/117 (4%)
Query: 43 KYLANHHLKANN-LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQR 101
YLA L + + +K + + + L +I+++ +
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER----LKADATD 206
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158
L + LG Y+ + + ++A ++ A+ N ++ +L
Sbjct: 207 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 263
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 28/170 (16%), Positives = 50/170 (29%), Gaps = 7/170 (4%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
F YL + +A N D AY+ L+ + T A L R IA A
Sbjct: 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH-LNRGIALYYG--GRDKLAQDDLL 135
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAA---IQCYRQAIEINNLDYRAWYGLGQTYEIL 157
+ +PN L ++ A Q + ++ + + LG E
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 195
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ + + LG+ + + A + + A
Sbjct: 196 LMERL-KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 4/132 (3%)
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIE----INNLDYRAWYGLGQTYEILRLPYYGLYYYK 168
+L + Q + ++ + Y G Y+ L L +
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNET 228
QA +RP+ P + LG + A + ++ + A
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127
Query: 229 EAAADLFMEFVS 240
+ A D + F
Sbjct: 128 KLAQDDLLAFYQ 139
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-14
Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 12/155 (7%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+L+ + A+ +P W LG E +N AAI ++ +E+ + +A L
Sbjct: 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDP----------RMLTALGEAFEKQEKISEAMKCYN 202
+Y K P + + ++ + + Y
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201
Query: 203 KSRAI--GDADGKALFKLAKLYDKLNETEAAADLF 235
++ D L L+ E A D F
Sbjct: 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 23/164 (14%), Positives = 47/164 (28%)
Query: 68 HEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTN 127
E E A+ S Q+ Q + S + + + G + ++ +
Sbjct: 23 QAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLP 82
Query: 128 AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187
I AI + D AW LG T + ++ ++PN+ + L AL +
Sbjct: 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142
Query: 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231
+ +A + + +
Sbjct: 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-10
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ F AL + P +W LG + A++ Y +A+EI R+ Y LG +
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP------------RMLTALGEAFEKQEKISEAMKCY 201
L + + A ++ + AL A ++
Sbjct: 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350
Query: 202 NKS 204
Sbjct: 351 LGD 353
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-14
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 6/154 (3%)
Query: 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL--GVWTLLGHEYMEMKNTNAAIQ 131
+K +L S+ E F A++L+P + V LG + + A+
Sbjct: 183 PSKRILGSLLSDSLFLE----VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238
Query: 132 CYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
C+ A+ + DY W LG T + Y++A ++P R LG +
Sbjct: 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298
Query: 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225
EA++ + ++ + + + + +
Sbjct: 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 7e-14
Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 26/218 (11%)
Query: 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEET-----AEEAKSLLRSIAQKRQPDESSSQ 94
A + H ++ D K Q EE + Q+
Sbjct: 27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN---- 82
Query: 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154
AVL F+ A++ +P ++ W LG E + AI R+ +E+ + A L ++
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGE---------------AFEKQEKISEAMK 199
L + P ++T E + E +
Sbjct: 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202
Query: 200 CYNKSRAI--GDADGKALFKLAKLYDKLNETEAAADLF 235
+ + + D L L++ E + A D F
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 7e-13
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+AV F AL + PN +W LG + A+ YR+A+E+ R+ Y LG +
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDP-----------RMLTALGEAFEKQEKISEAMKCYN 202
L + ++ +A ++ + + L A +
Sbjct: 295 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354
Query: 203 KSRAI 207
+ +
Sbjct: 355 RDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 16/194 (8%)
Query: 99 FQRALKLNPNYLGVWTLLGHEYMEMKNT------------NAAIQCYRQAIEINN----L 142
F+RA + + W L E EM + Y + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202
D+ + G + ++ A P LG + E+ A+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 203 KSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262
+ + + AL LA + + A ++ +++ +A L
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 263 NHHLKANNLDTAYK 276
+L +
Sbjct: 183 PSKRILGSLLSDSL 196
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-13
Identities = 46/311 (14%), Positives = 101/311 (32%), Gaps = 36/311 (11%)
Query: 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK 60
M L + + ++D A ++ + + L +A K
Sbjct: 65 MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIK 124
Query: 61 CAQKCLQH----EETAEEAKSLLR-SIAQKRQPDESSSQAVLYFQRALKLNPNYLG---- 111
+K ++ E+A+ + S + + ++ Y ++A ++ +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--TYFSMDYARQAYEIYKEHEAYNIR 182
Query: 112 ---VWTLLGHEYMEMKNTNAAIQCYRQAIEINN-LDYR-----AWYGLGQTYEILRLPYY 162
+L ++++K AI +++A + Y +G
Sbjct: 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242
Query: 163 GLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADG 212
+ Y+K+A V P+ P+ + + K KI +A + ++K + GD
Sbjct: 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302
Query: 213 KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272
+ F+ K E A F +F+ +A D +A ++ + N
Sbjct: 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED------FAIDVAKYYHERKNFQ 356
Query: 273 TAYKCAQKCLQ 283
A K Q
Sbjct: 357 KASAYFLKVEQ 367
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 20/180 (11%), Positives = 61/180 (33%), Gaps = 18/180 (10%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS---IAQKRQPDESSSQAVLYFQR 101
A + L + A QK E ++ + + R+ I + A+ YF+R
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 102 ALKLN------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWY--- 148
A+ + P+ + L+ + ++ + A + + + + ++ Y + +
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 149 -GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
L + + + + + + + + +++ +A + K +
Sbjct: 310 KSLYLSGPDEEAIQGFFDFLESKML-YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 30/302 (9%), Positives = 92/302 (30%), Gaps = 29/302 (9%)
Query: 6 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 65
Y + +T E + ++T +++ + + A ++
Sbjct: 68 YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA 127
Query: 66 LQ----HEETAEEAKSLLR-SIAQKRQPDESSSQAVLYFQRALKL-------NPNYLGVW 113
+ + E+A+ + + A + + ++ + +AL + + +
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHM--KQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185
Query: 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYY 167
++ Y + K+ + A+ A+E+ + + +Y+ + ++
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245
Query: 168 KQA-----HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-DADGKALFKLAKL 221
++A V P++L L K + +A + + K +L
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 222 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281
+ + + +S + + A + + + A +K
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNLHAYIE---ACARSAAAVFESSCHFEQAAAFYRKV 362
Query: 282 LQ 283
L+
Sbjct: 363 LK 364
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 8e-08
Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 21/181 (11%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS-----IAQKRQPDESSSQAVLYF 99
+A ++ + D A + L+ + + + S + R D AV +F
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--DQMAVEHF 245
Query: 100 QRALKLN-----PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWY-- 148
Q+A K++ V L + T A Q + ++ ++ Y+ +
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 149 --GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206
+ + R + L Y+++ ++ + FE +A Y K
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364
Query: 207 I 207
Sbjct: 365 A 365
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-12
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
++A L F+ + P W LG E + AI A ++ D L
Sbjct: 34 AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93
Query: 153 TYEILRLPYYGLYYYKQAHMVRPN 176
++ L + + +P
Sbjct: 94 SHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-12
Identities = 15/91 (16%), Positives = 27/91 (29%)
Query: 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHM 172
G +++ N A + + AW LG T + A M
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
+ P D + AL + + + A+
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRA 110
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 5e-10
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 44 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRAL 103
LK NL A + Q E EEA L + Q E A++ A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL-GLTQAEN--EKDGLAIIALNHAR 78
Query: 104 KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN 140
L+P + V L + N NAA+ R +
Sbjct: 79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 105 LNP-NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163
++P N W LG+ Y + + + AI+ Y++A+E++ + AWY LG Y
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ YY++A + PN+ LG A+ KQ EA++ Y K+ +
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 54.7 bits (133), Expect = 1e-09
Identities = 33/98 (33%), Positives = 56/98 (57%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+PN W LG+ Y + + + AI+ Y++A+E++ + AWY LG
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
Y + YY++A + PN+ LG A +KQ
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-11
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+ L + + + LG Y E + +AA+ R A++ + AW LG+
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 153 TYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQEKISEAMKCYN 202
T + ++ + D +++ L + + ++
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 15/121 (12%), Positives = 24/121 (19%), Gaps = 39/121 (32%)
Query: 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYF 99
L + + D A
Sbjct: 20 LLRFTLGKTYAEHEQFDAALPH-------------------------------------L 42
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLGQTYEIL 157
+ AL +P Y W LG + A Q + + + D + L L
Sbjct: 43 RAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102
Query: 158 R 158
Sbjct: 103 A 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 5e-04
Identities = 8/69 (11%), Positives = 20/69 (28%)
Query: 167 YKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226
+ ++ + LG+ + + E+ A+ + A L K
Sbjct: 8 LEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67
Query: 227 ETEAAADLF 235
+ A +
Sbjct: 68 DRAGARQAW 76
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 8e-11
Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 53/266 (19%)
Query: 52 ANNLDTAYKCAQKCLQHEE---TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN 108
+ L A L H T +E KSLL R P + + L NP
Sbjct: 278 TDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPRE-------VLTTNPR 328
Query: 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168
L ++ + T ++ + + L + + +L Y + +
Sbjct: 329 RLS---IIAESIRDGLAT---WDNWKH-VNCDKLT-TI---IESSLNVLEPAEYRKMFDR 377
Query: 169 QAHMVRPND----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
+ V P +L+ + K + + K + S ++ + +Y +
Sbjct: 378 LS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLE 434
Query: 225 LNET-EAAADLFMEFV------SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKC 277
L E L V D+ P +F + ++ HHLK
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIG-HHLK---------- 482
Query: 278 AQKCLQHEETAEEAKSLL--RSIAQK 301
E L R + QK
Sbjct: 483 --NIEHPERMTLFRMVFLDFRFLEQK 506
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 1e-10
Identities = 18/205 (8%), Positives = 50/205 (24%), Gaps = 8/205 (3%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A + A + + D + + LL A D++ A+
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLL-MAASIYFYDQNPDAALRTLH 125
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
+ L + +++ + A + ++ + +
Sbjct: 126 QGDSLECMAM-----TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 161 YYG--LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
Y +++ +L Q + A ++ + L L
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 219 AKLYDKLNETEAAADLFMEFVSKLD 243
L L + + ++ +
Sbjct: 241 VVLSQHLGKPPEVTNRYLSQLKDAH 265
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 4e-10
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLG 151
+++ F++A++L+P W + G ++ A+ CY I + + + W
Sbjct: 24 ESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83
Query: 152 QTYEILRLPYYGLYYYKQAHMVRPND 177
+ + + +
Sbjct: 84 DALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 6e-10
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGL 164
+ + L G + N +I + +AI+++ + + W G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 165 YYYKQAHMVRPNDPRMLTA---LGEAFEKQEKISEAMKCYNKSRAI 207
Y V D +A E + +
Sbjct: 61 DCYNYVINVIE-DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 3/52 (5%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 95 AVLYFQRALKLNPNYLGV--WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY 144
AV + + + + W ++ + ++ + +
Sbjct: 59 AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 25/174 (14%), Positives = 48/174 (27%), Gaps = 22/174 (12%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR-- 145
+ + L G + A + ++ AI+ D R
Sbjct: 26 GGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL 85
Query: 146 --AWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKISEA 197
+ LG Y L + Y+K + R + + LG + + EA
Sbjct: 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145
Query: 198 MKCYNKS----RAIGDADGKA--LFKLAKLYDKLNETEAAADLFMEFVSKLDTF 245
C + R +GD + L+ L +Y + + +
Sbjct: 146 AICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-08
Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-----NNL 142
A+ + Q L++ + LG+ ++ + A + Y++ + +
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300
Query: 143 DY-RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L + Y+ + + R + R +LG A
Sbjct: 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360
Query: 196 EAMKCYNKSRAI 207
A+K + +
Sbjct: 361 RALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 16/136 (11%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYYKQ 169
+ + + + + + G+ G+ +++
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 170 AHMVRPNDPR----MLTALGEAFEKQEKISEAMKCYNKS----RAIGDADG--KALFKLA 219
A D R + + LG A+ ++AM+ + +++ D G K+ L
Sbjct: 74 AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133
Query: 220 KLYDKLNETEAAADLF 235
+ + AA
Sbjct: 134 NTLKVMGRFDEAAICC 149
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-09
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWYGLG 151
+A+ F+ ++ +P+Y+G + LG Y + T+ AI Y Q IE+ + L
Sbjct: 25 RALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84
Query: 152 QTYEIL 157
Sbjct: 85 DAKLKA 90
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-08
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
+P L E+++ N + A+ + + +E + +Y LG+ YE L +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 166 YYKQAHMVRPN--DPRMLTALGEAFEKQEKI 194
Y Q V + L+ L +A K E +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-05
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 175 PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234
P DP AL + K + S A+ + + + L KLY++L+ T+ A D
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 235 F 235
+
Sbjct: 64 Y 64
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-09
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 129 AIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185
A+ Y +AI + GLG T+ L PN +
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 186 EAFEKQEKISEAMKCYNKSRAIGDAD 211
+ + ++ K A D
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-06
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 94 QAVLYFQRALKLN---PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150
QAV Y+++A+ + + LG + + A ++
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 151 GQTYEILRLPYYGLYYYKQAHMVRPNDP 178
L G+ + +D
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A+ Y+Q+AL+L+PN W LG+ Y + + + AI+ Y++A+E++ + A LG
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86
Query: 154 Y 154
Sbjct: 87 K 87
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 105 LNP-NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163
++P N W LG+ Y + + + AI+ Y++A+E++ + AWY LG Y
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQ 191
+ YY++A + PN+ LG A +KQ
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQ 90
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 24/163 (14%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--- 144
AV+ ++ L + ++ LG+ Y+ + A + Y++ + +
Sbjct: 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264
Query: 145 ---RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L+ + Y+ + + R + R +LG A+
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324
Query: 196 EAMKCYNKS----RAIGDADG--KALFKLAKLYDKLNETEAAA 232
+AM K R +GD G A L+ L L + +
Sbjct: 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 16/137 (11%)
Query: 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR----AWYGLGQTYEILRLPYYGLYYYKQ 169
L G + + A + + A+++ D + + LG Y L L Y+
Sbjct: 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 170 AHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGD--ADGKALFK 217
+ + + + LG + EA+ C + R + D + +AL+
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 132
Query: 218 LAKLYDKLNETEAAADL 234
L +Y ++
Sbjct: 133 LGNVYHAKGKSFGCPGP 149
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 46/186 (24%)
Query: 94 QAVLYFQRALKLN----PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-----NNLDY 144
V +F+ A+++ +++ LG+ Y + + A++ + + + + L
Sbjct: 27 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86
Query: 145 -RAWYGLGQTYEILR-----LPYY-----------------------GLYYYKQAHMVRP 175
+A LG T ++L + G Y+ +
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK--SF 144
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGD--ADGKALFKLAKLYDKLNETE 229
P E ++ + A+ Y ++ A+GD A G+A L + L
Sbjct: 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 204
Query: 230 AAADLF 235
A
Sbjct: 205 DAVIAH 210
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 25/167 (14%)
Query: 94 QAVLYFQRALKL-----NPNYLG-VWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLD 143
+A Y + +P +LG+ Y M + A ++ + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 144 Y--RAWYGLGQTYEILRLPYYGLYYYKQAHMVR---PNDPRM----LTALGEAFEKQEKI 194
RA + +G + + + + P DP + +
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 195 SEAMKCYNKS----RAIGDADG--KALFKLAKLYDKLNETEAAADLF 235
+ A + Y KS + D A L L + A +
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 25/159 (15%)
Query: 94 QAVLYFQRALKL---NPNYLGVWTL---LGHEYMEMKNTNAAIQCYRQAIEI-------N 140
+A FQ + + ++ +G N +AA +C+ + E+
Sbjct: 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103
Query: 141 NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKI 194
Y + Y+++ + + LG+ ++++ +
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 195 SEAMKCYNKSRAI----GDADGKA--LFKLAKLYDKLNE 227
EA + + ++R I D++ + +L L +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-08
Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A F R++ + + + G Y + + + AI+ ++A+ + Y
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK---- 110
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
GL + A V N + + K+E+ +A + + ++
Sbjct: 111 -------ILGLQFKLFACEVLYN-------IAFMYAKKEEWKKAEEQLALATSMKSEPRH 156
Query: 214 ALFKLA 219
+ A
Sbjct: 157 SKIDKA 162
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 7e-08
Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 5/221 (2%)
Query: 72 AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT-NAAI 130
+++ + + Q DE S +A + A++LN VW ++ + +
Sbjct: 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152
Query: 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
IE +Y+ W+ E LR P L + + ++
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212
Query: 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250
+ ++ ++ + + + A L E L+ P
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272
Query: 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 291
+ K + L+ L + L + +
Sbjct: 273 NESAWNYLKGI----LQDRGLSKYPNLLNQLLDLQPSHSSP 309
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161
+ + + V+ + + A + R AIE+N +Y W+ + L+
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 162 YG-LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
+ + Y +P + ++ E S+ ++
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD 191
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 17/169 (10%), Positives = 50/169 (29%), Gaps = 8/169 (4%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
+ Y + + A+K + ++ R + + Q D + + Y
Sbjct: 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH--EEMNYIT 156
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
++ P VW +++ + ++ + + +Y AW + +L
Sbjct: 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
Query: 161 YYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKCYNK 203
L Y Q + + + + + + ++ +
Sbjct: 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 8e-08
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 94 QAVLYFQRALKLNPNYLG------VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--- 144
AV+ ++ L + + ++ LG+ Y+ + A + Y++ + +
Sbjct: 27 DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86
Query: 145 ---RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L+ + Y+ + + R + R +LG A+
Sbjct: 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146
Query: 196 EAMKCYNKS----RAIGD 209
+AM K R +GD
Sbjct: 147 QAMHFAEKHLEISREVGD 164
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 18/138 (13%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEIN-NLDYR-----AWYGLGQTYEILRLPYYGLYYYKQ 169
LG+ + + N A+ + Q + I + A+ LG Y L YYK+
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 170 AHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADGKA--LFK 217
++ R + + +LG + + +A+ + K + + D G+ +
Sbjct: 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134
Query: 218 LAKLYDKLNETEAAADLF 235
L Y L + A
Sbjct: 135 LGNAYTALGNHDQAMHFA 152
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 94 QAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY--- 144
AV+ ++ L + ++ LG+ Y+ + A + Y++ + +
Sbjct: 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260
Query: 145 ---RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKIS 195
++ Y LG TY +L+ + Y+ + + R + R +LG A+
Sbjct: 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320
Query: 196 EAMKCYNKS----RAIGD 209
+AM K R +GD
Sbjct: 321 QAMHFAEKHLEISREVGD 338
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR----AWYGLGQTYEILRLPYYGLYYYKQ 169
L G + + A + + A+++ D + + LG Y L L Y+
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 170 AHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADGKA--LFK 217
+ + + + LG + EA+ C + R + D G+A L+
Sbjct: 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128
Query: 218 LAKLYDKLNETEAAADLF 235
L +Y ++
Sbjct: 129 LGNVYHAKGKSFGCPGPQ 146
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 51/244 (20%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQ----HEETAEEAKSLLR-SIAQKRQPDESSSQA 95
+ L N + ++ A + L + EAK+ K + +A
Sbjct: 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN--FDEA 102
Query: 96 VLYFQRALKLNP------------NYLG-VWTLLGHEYMEMKNTNA-------------A 129
++ QR L ++ LG V+ G + + A
Sbjct: 103 IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162
Query: 130 IQCYRQAIEI-----NNLDY-RAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPND 177
+ Y + + + + RA+ LG T+ +L + ++Q ++ + +
Sbjct: 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222
Query: 178 PRMLTALGEAFEKQEKISEAMKCYNKS----RAIGDADGKA--LFKLAKLYDKLNETEAA 231
R + LG A+ + A + Y K+ R + D +A + L Y L + E A
Sbjct: 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282
Query: 232 ADLF 235
D
Sbjct: 283 IDYH 286
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 9e-05
Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 46/186 (24%)
Query: 94 QAVLYFQRALKLN----PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI-----NNLDY 144
V +F+ A+++ +++ LG+ Y + + A++ + + + + L
Sbjct: 23 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82
Query: 145 -RAWYGLGQTYEILR-----LPYY-----------------------GLYYYKQAHMVRP 175
+A LG T ++L + G Y+ +
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK--SF 140
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKS----RAIGD--ADGKALFKLAKLYDKLNETE 229
P + + + A+ Y ++ A+GD A G+A L + L
Sbjct: 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 200
Query: 230 AAADLF 235
A
Sbjct: 201 DAVIAH 206
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-06
Identities = 26/124 (20%), Positives = 47/124 (37%)
Query: 104 KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163
+ + G+E M+++N AA+ Y +AIE+N + + Y L
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223
+ ++A + P + +G A K EA+ Y K+ + + L
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Query: 224 KLNE 227
KL E
Sbjct: 126 KLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-05
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
AV +RA+ ++P Y + +G + A+ Y++A+E++ + L
Sbjct: 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Query: 154 YEILR 158
LR
Sbjct: 124 ELKLR 128
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDY-RAWYGLGQTYEILRLPYYGLYYYKQAHMVR 174
E + + A+Q + ++ + A+Y +G Y L L Y+ A +
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 175 PNDPRMLTALGEAFEKQEKISEAMKCYNK 203
P+ P A + ++ + + + YNK
Sbjct: 66 PDSP--------ALQARKMVMDILNFYNK 86
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 94 QAVLYFQRALKLNP-NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A+ + L+ P + L+G+ Y ++ + A+ Y+ AIE+N D A
Sbjct: 18 NALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPALQARKM 76
Query: 153 TYEILRLPYYGLYYYKQ 169
+I L +Y Y Q
Sbjct: 77 VMDI--LNFYNKDMYNQ 91
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 8e-06
Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 35/233 (15%)
Query: 93 SQAVLYFQRALKL--------NPNYLG---VWTLLGHEYMEMKNTNAAIQCYRQAIEI-- 139
S+A + +A K P+Y + + K A Y Q E
Sbjct: 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHA 67
Query: 140 NNLDY----RAWYGLGQTYEILRLPYYGLYYYKQAHMV--RPNDPRM----LTALGEAFE 189
NN +A+ G + L+ + Y ++A ++ P L G+ E
Sbjct: 68 NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127
Query: 190 KQEKISEAMKCYNKSRAIGDADGK------ALFKLAKLYDKLNETEAAADLFMEFVSKLD 243
+S+A+ Y ++ A+ + + + + K ++L + + + AA + S
Sbjct: 128 -PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186
Query: 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE--ETAEEAKSL 294
P + L + A KC ++ +E+ +L
Sbjct: 187 EMENYPTC---YKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAAL 236
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165
+ LG+ + K+ A Y +AIE++ + + Y + +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 166 YYKQAHMVRPNDPRMLTA-------LGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218
+ ++A V G AF+KQ +S A++ +++S + D + + K+
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE-FRDPELVKKV 122
Query: 219 AKL 221
+L
Sbjct: 123 KEL 125
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 13/141 (9%), Positives = 38/141 (26%), Gaps = 12/141 (8%)
Query: 78 LLRSIAQKRQPD-ESSSQAVLYFQRALKLNPNYLGVWTLLGHEY--------MEMKNTNA 128
++ D +S ++A ++ +P + ++ K A
Sbjct: 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAA 259
Query: 129 AIQCYRQAIEINNLDYRAWY--GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186
+ + L+ + + + + + + LG+
Sbjct: 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYV-LLGK 318
Query: 187 AFEKQEKISEAMKCYNKSRAI 207
+E + EA Y + +
Sbjct: 319 VYEMKGMNREAADAYLTAFNL 339
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 12/173 (6%)
Query: 44 YLANHHLK---ANNLDTAYKCAQKCLQ-----HEETAEEAKSLLRSIAQKRQPDESSSQA 95
Y A+ +L +L+ A + + +Q AE+A + +Q ++ +
Sbjct: 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAAL 260
Query: 96 VLYFQRALKL--NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+ L N ++ + + T+ + Q I++ + + LG+
Sbjct: 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKV 319
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ-EKISEAMKCYNKSR 205
YE+ + Y A +RP + F+ + + + S
Sbjct: 320 YEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLASE 372
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 33/182 (18%), Positives = 48/182 (26%), Gaps = 49/182 (26%)
Query: 94 QAVLYFQRALKLNPNYLG------VWTL--LGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
+A +RAL++ LG L L YR+A+EI Y
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI----YA 158
Query: 146 AWYG------------LGQTYEILRLPYYGLY-----YYKQA-HMVR-----PNDPRMLT 182
G L Y G Y YK+ +
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQ-----GKYQDAETLYKEILTRAHEKEFGSVNGDNKP 213
Query: 183 A---LGEAFEKQEKISEAMKCYNKS---RAIGDAD---GKALFKLAKLYDKLNETEAAAD 233
E E ++K ++ +A L L LY + + EAA
Sbjct: 214 IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273
Query: 234 LF 235
L
Sbjct: 274 LE 275
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 8e-05
Identities = 32/182 (17%), Positives = 47/182 (25%), Gaps = 49/182 (26%)
Query: 94 QAVLYFQRALKLNPNYLG------VWTL--LGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145
+A +RAL++ LG L L Y++A+EI Y+
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI----YQ 184
Query: 146 AWYG------------LGQTYEILRLPYYGLY-----YYKQA-HMVR-----PNDPRMLT 182
G L Y G + YK+ D
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQ-----GKFKQAETLYKEILTRAHEREFGSVDDENKP 239
Query: 183 A---LGEAFEKQEKISEAMKCYNKS---RAIGDAD---GKALFKLAKLYDKLNETEAAAD 233
E E + K + +A L L LY + + EAA
Sbjct: 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299
Query: 234 LF 235
L
Sbjct: 300 LE 301
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-05
Identities = 21/106 (19%), Positives = 41/106 (38%)
Query: 98 YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157
+ +NP+ + G+E + + A++ Y +AI+ N D + + Y L
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
Query: 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203
L ++ + P + T A E + ++AM Y K
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 109
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 28/136 (20%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ ++ +A +L+P + T Y E + N + +AIE+ + + + +
Sbjct: 22 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213
Y +G ++ K+EK +A+ YNKS A
Sbjct: 82 Y---------------------------ARIGNSYFKEEKYKDAIHFYNKSLAE-HRTPD 113
Query: 214 ALFKLAKLYDKLNETE 229
L K + L E E
Sbjct: 114 VLKKCQQAEKILKEQE 129
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 1/137 (0%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
+A + RA+ NP +T Y++M+ A+ R+A+E++ +A + LGQ
Sbjct: 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG 212
+ + ++A+ + + + K + R +++
Sbjct: 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESEL 139
Query: 213 KALFKLAKLYDKLNETE 229
+ ++ E E
Sbjct: 140 HSYLTRLIAAERERELE 156
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 19/197 (9%), Positives = 55/197 (27%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G+ + A CY +AI N L + Y ++ P L ++A +
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
+ LG+ + E EA+ ++ ++ ++ + + +
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130
Query: 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 296
+ + + + + L + + E ++ + +
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMD 190
Query: 297 SIAQKRQPDESSSQPME 313
+ + +
Sbjct: 191 ELFSQVDEKRKKRDIPD 207
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 12/125 (9%), Positives = 32/125 (25%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
E ++ A+ + + + + +
Sbjct: 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD 72
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
+ +Q S +K + A + + +LA Y+++ E A +L
Sbjct: 73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132
Query: 237 EFVSK 241
+
Sbjct: 133 NILKV 137
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 2/119 (1%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
G+ M K + AI Y QA+ I + Y + A +V P
Sbjct: 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNETEAAAD 233
+ + LG A A + Y K L K+ E A+
Sbjct: 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAE 136
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 9e-04
Identities = 18/105 (17%), Positives = 42/105 (40%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
A+ ++ +A++LNP+ + Y+ + A+ +AIE++ + +Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
+ L L Y+ V+P+D E + ++ +
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 100.0 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 100.0 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 100.0 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 100.0 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 100.0 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 100.0 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 100.0 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 100.0 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 100.0 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.98 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.98 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.97 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.97 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.97 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.97 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.97 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.97 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.97 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.97 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.96 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.96 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.96 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.96 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.96 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.96 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.96 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.96 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.96 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.96 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.96 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.96 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.96 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.95 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.95 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.95 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.94 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.94 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.93 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.93 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.92 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.92 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.92 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.91 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.91 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.91 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.89 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.89 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.84 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.83 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.8 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.8 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.78 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.78 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.78 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.77 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.77 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.76 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.76 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.75 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.75 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.74 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.74 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.74 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.74 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.73 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.72 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.72 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.71 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.71 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.7 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.7 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.7 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.68 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.67 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.67 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.67 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.67 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.67 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.66 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.65 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.65 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.65 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.65 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.64 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.64 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.63 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.63 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.63 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.63 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.62 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.61 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.6 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.6 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.59 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.54 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.44 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.44 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.44 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.43 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.39 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.31 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.31 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.31 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.3 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.26 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.21 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.12 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 99.03 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.02 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 99.02 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.97 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.9 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.83 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.83 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.52 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.51 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.48 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.26 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.9 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.87 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.82 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.82 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.77 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.7 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.7 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.56 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.17 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 97.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.75 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.72 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.72 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.69 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.69 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.66 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.54 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 96.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.43 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.4 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.38 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.31 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 96.12 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.95 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 95.62 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.36 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.21 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.12 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.13 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 87.27 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 86.27 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.8 | |
| 3ax2_A | 73 | Mitochondrial import receptor subunit TOM20 homol; | 82.81 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 80.22 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=291.59 Aligned_cols=305 Identities=18% Similarity=0.191 Sum_probs=258.7
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+.++...|++++|+..|++++...|... .++..+|.++...|++++|+..|+++++.+|+....+..++
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-- 142 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLKPDFI---------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG-- 142 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCcchH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--
Confidence 5566677777777777777764322211 45677777777777777777777777777777666544444
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++
T Consensus 143 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 143 -NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp -HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred -HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 4455568999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+..+++++...|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
|. ...++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|+..|+++++++|++
T Consensus 302 p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 302 PT---------HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp TT---------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred cc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 88 788999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcccc
Q psy9209 323 PSTRSS 328 (349)
Q Consensus 323 ~~~~~~ 328 (349)
+.++.+
T Consensus 373 ~~a~~~ 378 (388)
T 1w3b_A 373 ADAYSN 378 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 765543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=284.82 Aligned_cols=276 Identities=19% Similarity=0.185 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++..+|.++...|++++|+..|++++..+|++..++..++.+ +...|++++|+..|+++++.+|+...++..+|.+
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA---LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3566666666666666666666666666666666554443333 3334666667777766666666666666777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
.+++++..+|+++.++..+|.++...|++++|+..|++++...|. .+.++..+|.++...|++++|+..|+
T Consensus 225 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---------FPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---------CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777777777777777777777777777777777776 57777777777777777777777777
Q ss_pred HHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 280 KCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
++++..|++..++..++.++...|++++|+..++++++.+|++...+.
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 777777777777777777777777777777778777777777655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=267.67 Aligned_cols=309 Identities=12% Similarity=0.026 Sum_probs=280.4
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|..+...|++++|+..|+++++..|... .++..+|.++...|++++|+..+++++..+|++..++..++.
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNY---------IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 47889999999999999999996443322 689999999999999999999999999999999888665554
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCc---ccHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCcccHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNP---NYLGVWTLL------------GHEYMEMKNTNAAIQCYRQAIEINNLDYRA 146 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 146 (349)
+ +...|++++|+..++++++.+| +++.++..+ |.++...|++++|+..++++++..|.++.+
T Consensus 80 ~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 80 L---LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp H---HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred H---HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 4 5556999999999999999999 888888777 799999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHH----------
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF---------- 216 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------- 216 (349)
+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred --HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 217 --KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 217 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
.+|.++...|++++|+..+++++...|.. ......++..+|.++...|++++|+..++++++..|+++.++..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSV-----AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44888999999999999999999998871 11223567789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 295 LRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 295 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
+|.++...|++++|+..|+++++++|+++.++.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999999999999999876543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=271.95 Aligned_cols=308 Identities=12% Similarity=0.030 Sum_probs=280.1
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|..+...|++++|+..|++++...+.. ..++..+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~- 101 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGDPDN---------YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG- 101 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH-
Confidence 4778899999999999999999543322 268999999999999999999999999999999988765555
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCcccHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYL---GVWTLL------------GHEYMEMKNTNAAIQCYRQAIEINNLDYRA 146 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 146 (349)
.++...|++++|+..|+++++.+|++. .++..+ |.++...|++++|+..|+++++..|.++.+
T Consensus 102 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 102 --HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 445557999999999999999999988 776555 667999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH--------
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL-------- 218 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-------- 218 (349)
+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++...|++...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887666
Q ss_pred ----HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHH
Q psy9209 219 ----AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 294 (349)
Q Consensus 219 ----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 294 (349)
|.++...|++++|+..|++++...|.. .......+..+|.++...|++++|+..++++++..|++..++..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSI-----AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 999999999999999999999998871 11125588999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 295 LRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 295 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+|.++...|++++|+..|+++++++|+++.++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 99999999999999999999999999987664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=255.39 Aligned_cols=287 Identities=12% Similarity=0.095 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..+..+|..++..|++++|+..+++++..+|.+...+..++.+ +...|++++|+..++++++.+|+++.++..+|.+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT---LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHH---HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHH---HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3578999999999999999999999999999988776555544 3445999999999999999999999999999999
Q ss_pred HHhcC-ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHH
Q psy9209 120 YMEMK-NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 120 ~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
+...| ++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 199 KCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
..++++++..|.++.++..+|.++...|++++|+..+++++...+..+.....+....++..+|.++...|++++|+.++
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988653222223446889999999999999999999999
Q ss_pred HHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 279 QKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 279 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
+++++..|++..++..+|.++...|++++|+.+|+++++++|+++.++..+
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHH
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHH
Confidence 999999999999999999999999999999999999999999998765544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=275.29 Aligned_cols=310 Identities=12% Similarity=0.077 Sum_probs=282.9
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
+..|.+.|++++|+..|+++++. +. + ..++..+|..+...|++++|+..|++++..+|++...+..++.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~-~~------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL-EK------S---SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS 348 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG-GG------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC-Cc------h---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 55677899999999999887732 11 1 26899999999999999999999999999999887776555544
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+...|++++|+..+++++...|++..++..+|.+|...|++++|+..|+++++..|.+..+|..++.++...|++++
T Consensus 349 ---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 349 ---LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp ---HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred ---HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+..|+++++..|.+..++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|++++...
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cccCCCCCCcch-HHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 243 DTFAAPPDKTCG-FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
|. ....+.. ..++..+|.++...|++++|+..++++++..|+++.++..++.++...|++++|...|+++++++|+
T Consensus 506 ~~---~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 506 KK---TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HH---SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hc---cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 54 1222323 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q psy9209 322 PPSTRSS 328 (349)
Q Consensus 322 ~~~~~~~ 328 (349)
++.++..
T Consensus 583 ~~~~~~~ 589 (597)
T 2xpi_A 583 EIMASDL 589 (597)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 8765543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=249.99 Aligned_cols=284 Identities=14% Similarity=0.101 Sum_probs=260.9
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...|++++|+..|++++...|... .++..++.++...|++++|+..+++++..+|+++.++..++.
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHA---------SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCh---------hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 47788899999999999999996443332 357788999999999999999999999999999888666654
Q ss_pred HHHhcCCCc-chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 82 IAQKRQPDE-SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 82 ~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
+ +...| ++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++
T Consensus 99 ~---~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 Y---YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp H---HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred H---HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 4 55568 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc---------cccHHHHHHHHHHHHhcCcHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG---------DADGKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~l~~~~~~~~~~~~A 231 (349)
++|+.+++++++..|.++.++..+|.++...|++++|+.++++++... |..+.++..+|.++...|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999999999999999985 66788999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHH-HHcCCCC
Q psy9209 232 ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA-QKRQPDE 306 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~ 306 (349)
+..+++++...|. ...++..+|.++...|++++|+.+++++++++|+++.++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQ---------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTT---------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCcc---------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999998 7899999999999999999999999999999999999999999988 4555543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=261.32 Aligned_cols=304 Identities=15% Similarity=0.135 Sum_probs=274.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchH---HHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE---EAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~ 78 (349)
+|.++...|++++|+..|+++++..+.. ..++..+|.++...|++++|+..|++++..+|++. ..+..
T Consensus 66 l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 66 RATVFLAMGKSKAALPDLTKVIQLKMDF---------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 4778999999999999999999643322 26899999999999999999999999999999988 66655
Q ss_pred HHHH---------HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH
Q psy9209 79 LRSI---------AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149 (349)
Q Consensus 79 l~~~---------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 149 (349)
+..+ +..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|.++.++..
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4333 5667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH------------HHHHHHhhCHHHHHHHHHHHHccccccH----H
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL------------GEAFEKQEKISEAMKCYNKSRAIGDADG----K 213 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~ 213 (349)
+|.++...|++++|+..|++++...|++...+..+ |.++...|++++|+.+|++++...|.++ .
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 99999999999999999999999999999887666 9999999999999999999999999875 4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
.+..+|.++...|++++|+..+++++...|. ...++..+|.++...|++++|+..+++++++.|+++.++.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPD---------NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHH
Confidence 7889999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HHHHH------------HHHcC-----CCCCchhHHHH-hhhcCCCCC
Q psy9209 294 LLRSI------------AQKRQ-----PDESSSQPMEC-AVVLDPVPP 323 (349)
Q Consensus 294 ~l~~~------------~~~~~-----~~~~A~~~~~~-a~~~~p~~~ 323 (349)
.++.+ +...| +.+++.+.|++ +++..|++.
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 99954 44555 34556888886 888888764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=257.28 Aligned_cols=297 Identities=14% Similarity=0.075 Sum_probs=257.0
Q ss_pred hHHhhCcHHHHHH-HHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAAD-LFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 5 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
.+...|++++|+. .|++++...+.. |... ...++.+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~---~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--- 105 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEEN---PLRD--HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLG--- 105 (368)
T ss_dssp ------------CHHHHCCCCCCSSC---TTTT--CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH---
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCC---cccc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH---
Confidence 4556788999998 888777332222 1110 135889999999999999999999999999999988866555
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHH---------------
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY--------------- 148 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------- 148 (349)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred HHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 44556799999999999999999999999999999999999999999999999999998766654
Q ss_pred -HHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 149 -GLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 149 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
.++.++ ..|++++|+.++++++...|. ++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence 466666 999999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh-----------HHHHHH
Q psy9209 226 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA-----------EEAKSL 294 (349)
Q Consensus 226 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----------~~~~~~ 294 (349)
|++++|+..|++++...|. ...++..+|.++...|++++|+.+|++++++.|+. ..++..
T Consensus 265 g~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 335 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPG---------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 335 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHH
Confidence 9999999999999999998 79999999999999999999999999999999887 899999
Q ss_pred HHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 295 LRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 295 l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
++.++...|++++|..+++++++..
T Consensus 336 l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 336 LRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHHhCChHhHHHhHHHHHHHH
Confidence 9999999999999999998877653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=262.48 Aligned_cols=311 Identities=14% Similarity=0.108 Sum_probs=270.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------------
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ-------------- 67 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-------------- 67 (349)
+|.+|...|++++|+..|+++++..|... .++..+|.++...|++++|+..|+ ++.
T Consensus 65 la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 65 ISACYISTGDLEKVIEFTTKALEIKPDHS---------KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPML 134 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHH
Confidence 47888999999999999999995433222 578999999999999888887663 332
Q ss_pred --------------------------------------------------------------------------------
Q psy9209 68 -------------------------------------------------------------------------------- 67 (349)
Q Consensus 68 -------------------------------------------------------------------------------- 67 (349)
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred ----------------hhhchHHHH----HHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChH
Q psy9209 68 ----------------HEETAEEAK----SLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 68 ----------------~~~~~~~~~----~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 127 (349)
.+|+++..+ ..+..++..+...|++++|+..+++++..+|+ +.++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 233332221 12344556666779999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 128 AAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
+|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh----------CCHHHHHHH
Q psy9209 208 GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----------NNLDTAYKC 277 (349)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~ 277 (349)
.|.++.++..+|.++...|++++|+..|++++...|.. .........+..+|.++... |++++|+.+
T Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ---EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC---SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc---hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 99999999999999999999999999999999998872 22233445577889999999 999999999
Q ss_pred HHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 278 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 278 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
|+++++.+|++..++..+|.++...|++++|+..|+++++++|+++...
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999999999999999999999999999999999999877653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=244.13 Aligned_cols=284 Identities=15% Similarity=0.150 Sum_probs=259.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh---chHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~ 78 (349)
.|.++...|++++|+..|+++++..|... .++..+|.++...|++++|+..+++++...| ++...+..
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 43 RATVFLAMGKSKAALPDLTKVIALKMDFT---------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcc---------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 47889999999999999999995433222 6799999999999999999999999999999 88887766
Q ss_pred HHHH---------HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH
Q psy9209 79 LRSI---------AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG 149 (349)
Q Consensus 79 l~~~---------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 149 (349)
++.+ +..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 193 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6432 5667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH------------HHHHHHHHhhCHHHHHHHHHHHHccccccHH----
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT------------ALGEAFEKQEKISEAMKCYNKSRAIGDADGK---- 213 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---- 213 (349)
+|.++...|++++|+..++++++..|+++.++. .+|.++...|++++|+..++++++..|.++.
T Consensus 194 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (359)
T 3ieg_A 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 999999999999999999999999999987654 4488899999999999999999999998774
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
++..+|.++...|++++|+..+++++...|. .+.++..+|.++...|++++|+.+|+++++++|++..++.
T Consensus 274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 274 SKERICHCFSKDEKPVEAIRICSEVLQMEPD---------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 4667999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q psy9209 294 LLRSIAQKRQ 303 (349)
Q Consensus 294 ~l~~~~~~~~ 303 (349)
.++.+....+
T Consensus 345 ~l~~~~~~~~ 354 (359)
T 3ieg_A 345 GLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=260.76 Aligned_cols=318 Identities=17% Similarity=0.105 Sum_probs=250.6
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhhhchHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA--NNLDTAYKCAQKCLQHEETAEEAKSLLR 80 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~l~ 80 (349)
|.+|...|++++|+..|+++++..+... .+.......++..+|.++... +++++|+.+|+++++++|+++.++..++
T Consensus 101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~ 179 (472)
T 4g1t_A 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFS-SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA 179 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSC-CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhHhcc-cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6788999999999999999986544332 223333346788888777654 5799999999999999999999988887
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI 156 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 156 (349)
.+...+...++.++|++.++++++++|+++.++..+|..+.. .|++++|+.++++++..+|..+.++..+|.+|..
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 776666566888999999999999999999999888877655 4678899999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-------------------hCHHHHHHHHHHHHccccccHHHHHH
Q psy9209 157 LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ-------------------EKISEAMKCYNKSRAIGDADGKALFK 217 (349)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~a~~~~~~~~~~~~~ 217 (349)
.|++++|+..++++++.+|+++.++..+|.+|... +.+++|+..++++++.+|....++..
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 339 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhh
Confidence 99999999999999999999999999999998653 44788999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH-HHHhCCHHHHHHHHHHHHccc-----------
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH-HLKANNLDTAYKCAQKCLQHE----------- 285 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~----------- 285 (349)
+|.++...|++++|+..|++++...|. ......++..+|.+ +...|++++|+.+|++++++.
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELT------PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 999999999999999999999998776 11123456677765 457899999999999998764
Q ss_pred -------------CChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 286 -------------ETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 286 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
|+++.++..+|.++..+|++++|+++|++++++.|.+|.+..
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 555678899999999999999999999999999999887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=261.54 Aligned_cols=234 Identities=13% Similarity=0.042 Sum_probs=131.2
Q ss_pred CcchHHHHHHHHHHHh-----h--C-------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALK-----L--N-------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTY 154 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~-----~--~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 154 (349)
.|++++|+..|+++++ + + |..+.++..+|.++...|++++|+..|+++++..|. ..++..+|.++
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~ 280 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIM 280 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHH
Confidence 4555555555555555 3 1 333445555555555556665555555555555554 44444444444
Q ss_pred HHhCCH----------------------------------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 155 EILRLP----------------------------------YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 155 ~~~~~~----------------------------------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
...|++ ++|+..+++++...|.++.++..+|.++...|++++|+..
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444 4444444444444444444444455555555555555555
Q ss_pred HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH---hCCHHHHHHH
Q psy9209 201 YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK---ANNLDTAYKC 277 (349)
Q Consensus 201 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 277 (349)
++++++..|.++.++..+|.++...|++++|+..+++++...|.. ........++..+|.++.. .|++++|+..
T Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL---DGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS---SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 555555555555555555555555555555555555555555541 1111113366666777666 6777777777
Q ss_pred HHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcc
Q psy9209 278 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTR 326 (349)
Q Consensus 278 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 326 (349)
+++++...|++..++..++.++...|++++|+..|+++++++|+++.++
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 7777666666666666777777777777777777777777766655443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=259.31 Aligned_cols=249 Identities=16% Similarity=0.125 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.++..+|.++...|++++|+..+++++..+|+ ... +..++.++...|++++|+..+++++..+|.++.++..+|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNS---YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHH---HHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHH---HHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH
Confidence 45666777777777777777777777777776 444 33444556667888888888888888888889999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccHH------HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH
Q psy9209 200 CYNKSRAIGDADGK------ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273 (349)
Q Consensus 200 ~~~~a~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (349)
.+++++...|.++. ++..+|.++...... ..+.+++...... ....+....++..+|.++...|++++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~A~~~~~~a--~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV----ENFIEATNLLEKA--SKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT----THHHHHHHHHHHH--HHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHH--HHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 99999999888755 999999988755433 3445554433221 11245678899999999999999999
Q ss_pred HHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 274 AYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 274 A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
|+.+|++++++.|+++.++..+...
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999988776544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=260.55 Aligned_cols=305 Identities=13% Similarity=0.125 Sum_probs=275.0
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHH------------------------------------
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL------------------------------------ 45 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------------------------------ 45 (349)
.+.+|.+.|++++|+..|+++++..+... .++..+
T Consensus 206 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 206 RGQVYTNLSNFDRAKECYKEALMVDAKCY---------EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCchhh---------HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 46789999999999999999995433221 223322
Q ss_pred --HHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 46 --ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 46 --~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
+..+...|++++|+..|++++.. |.+...+..++ ..+...|++++|+..|+++++.+|++..++..++.++...
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKA---DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 55566789999999999999987 66666655444 4566679999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNK 203 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 203 (349)
|++++|+..++++++..|.+..++..+|.+|...|++++|+.+|+++++..|.+..+|..+|.++...|++++|+..|++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 204 SRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 204 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
+++..|.+..++..+|.++...|++++|+..|++++...|. .+.++..+|.++...|++++|+..|+++++
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---------DPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 789999999999999999999999999998
Q ss_pred c------cCCh-HHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcccc
Q psy9209 284 H------EETA-EEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 284 ~------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
. +|+. ..++..++.++...|++++|+..++++++.+|+++.++..
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 7 5654 7899999999999999999999999999999988765543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=260.03 Aligned_cols=304 Identities=14% Similarity=0.085 Sum_probs=244.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...|++++|+..|++++...|... .++..+|.++...|++++|+..|++++..+|++..++..++.
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEP---------VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCCc---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 47889999999999999999996443322 689999999999999999999999999999999887665554
Q ss_pred HHHhcCCCc-----------------------------------------------------------------------
Q psy9209 82 IAQKRQPDE----------------------------------------------------------------------- 90 (349)
Q Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (349)
+... .|
T Consensus 102 ~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 102 ANES---LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHH---HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHH---cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 4322 23
Q ss_pred --------------------------------------chHHHHHHHHHHHhhCcccHH-------HHHHHHHHHHhcCC
Q psy9209 91 --------------------------------------SSSQAVLYFQRALKLNPNYLG-------VWTLLGHEYMEMKN 125 (349)
Q Consensus 91 --------------------------------------~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~ 125 (349)
++++|+..++++++.+|+++. ++..+|.++...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 455555566666666776644 46777788888888
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSR 205 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 205 (349)
+++|+..|+++++.+|. ..++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..+++++
T Consensus 259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888888888887 88888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc
Q psy9209 206 AIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 285 (349)
..+|.++.++..+|.++...|++++|+..+++++...|. .+.++..+|.++...|++++|+..|+++++..
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT---------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888888888888888888887 67788888888888888888888888888877
Q ss_pred CChHH------HHHHHHHHHHHc----------CCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 286 ETAEE------AKSLLRSIAQKR----------QPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 286 ~~~~~------~~~~l~~~~~~~----------~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
|+... .+..++.++... |++++|+..|+++++.+|+++.++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 65432 245556777777 8888888888888888888765543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=244.42 Aligned_cols=265 Identities=15% Similarity=0.095 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..++.+|..+...|++++|+..|++++..+|++..++..++. ++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGI---TQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHH---HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 358999999999999999999999999999999888665554 45557999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGL----------GQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEA 187 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 187 (349)
+...|++++|+..|+++++..|.+..++..+ |.++...|++++|+.++++++...|. ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999999877666555 99999999999999999999999999 89999999999
Q ss_pred HHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
+...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|++++...|. ...++..+|.++..
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG---------FIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------chHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 79999999999999
Q ss_pred hCCHHHHHHHHHHHHcccCC------------hHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 268 ANNLDTAYKCAQKCLQHEET------------AEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
.|++++|+.+|++++++.|+ ...++..++.++..+|+.+.+....++.+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999999999999999876 36788999999999999887776665533
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=245.85 Aligned_cols=311 Identities=14% Similarity=0.050 Sum_probs=257.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhc--------hH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET--------AE 73 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--------~~ 73 (349)
.|.++..+|++++|+..|+++++..+.............+|..+|.+|...|++++|+.++++++.+.+. .+
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 4678899999999999999999754433322222223467999999999999999999999999987553 23
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH---hcCChHHHHHHHHHHHHhCcccHHHHHHH
Q psy9209 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM---EMKNTNAAIQCYRQAIEINNLDYRAWYGL 150 (349)
Q Consensus 74 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 150 (349)
..+...+. +......+++++|+.+|+++++++|+++.++..+|.++. ..++.++|++.++++++++|.++.++..+
T Consensus 137 ~~~~~~g~-~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l 215 (472)
T 4g1t_A 137 ELDCEEGW-TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHH-HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHH-HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 33322222 122234578999999999999999999999999988854 45788899999999999999999999988
Q ss_pred HHHHHH----hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc-
Q psy9209 151 GQTYEI----LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL- 225 (349)
Q Consensus 151 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~- 225 (349)
|..+.. .|++++|+.++++++..+|..+.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 877654 467889999999999999999999999999999999999999999999999999999999999988653
Q ss_pred ------------------CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 226 ------------------NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 226 ------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
+.+++|+..+++++...|. ...++..+|.++...|++++|+.+|+++++..|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN---------LFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT---------TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc---------hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 3467899999999999998 7888999999999999999999999999999887
Q ss_pred hHH---HHHHHHHH-HHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 288 AEE---AKSLLRSI-AQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 288 ~~~---~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
... .+..++.+ ....|++++|+..|++++++.|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 654 34555554 456889999999999999887764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=238.18 Aligned_cols=273 Identities=15% Similarity=0.047 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..++.+|..+...|++++|+..+++++..+|++..++..++ .++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLG---LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45889999999999999999999999999999988866555 445557999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHH--------------HH-HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGL--------------GQ-TYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
+...|++++|+..++++++..|.+...+..+ +. ++...|++++|+.+++++++..|.++.++..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999987777776 66 68899999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|. ...++..+|.+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~ 249 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG---------YVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 78999999999
Q ss_pred HHHhCCHHHHHHHHHHHHcccCC------------hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 265 HLKANNLDTAYKCAQKCLQHEET------------AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
+...|++++|+.++++++...|+ ...++..++.++...|++++|...++++++..|++..
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999999999999 8999999999999999999999999999888776544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=234.11 Aligned_cols=251 Identities=9% Similarity=0.094 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhhCcccHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDES-SSQAVLYFQRALKLNPNYLGVWTLLG 117 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la 117 (349)
..++..+|.++...|++++|+..+++++.++|++..++..++.+.. ..|+ +++|+..|++++.++|++..+|+.+|
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999777776544 4586 99999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hhCHHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK-QEKISE 196 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 196 (349)
.++..+|++++|+..|+++++++|++..+|.++|.++...|++++|+.+|+++++++|++..+|+.+|.++.. .|..++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 565577
Q ss_pred H-----HHHHHHHHccccccHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC
Q psy9209 197 A-----MKCYNKSRAIGDADGKALFKLAKLYDKLN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 197 A-----~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (349)
| +.+|++++.++|++..+|+.+|.++...| ++++|+..++++ ...|. ...++..+|.++..+|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~---------~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS---------SPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC---------CHHHHHHHHHHHHHHh
Confidence 7 59999999999999999999999999988 699999999888 77777 7999999999999985
Q ss_pred ---------CHHHHHHHHHHH-HcccCChHHHHHHHHHHHHHc
Q psy9209 270 ---------NLDTAYKCAQKC-LQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 270 ---------~~~~A~~~~~~a-~~~~~~~~~~~~~l~~~~~~~ 302 (349)
.+++|+.+|+++ ++++|.....|..++..+..+
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 359999999999 999999999999998877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=243.66 Aligned_cols=265 Identities=16% Similarity=0.178 Sum_probs=234.7
Q ss_pred HHHhcCCHHHHHH-HHHHHhhhhhchHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC
Q psy9209 48 HHLKANNLDTAYK-CAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN 125 (349)
Q Consensus 48 ~~~~~~~~~~A~~-~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 125 (349)
++...|++++|+. .+++++...|+++.. ...+..++..+...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5667799999999 999999988876521 11233455566667999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH----------------HHHHHHH
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT----------------ALGEAFE 189 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~l~~~~~ 189 (349)
+++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999999887665 466666
Q ss_pred HhhCHHHHHHHHHHHHccccc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRAIGDA--DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
..|++++|+..+++++...|. .+.++..+|.++...|++++|+..+++++...|. .+.++..+|.++..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---------DYLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------CHHHHHHHHHHHHH
Confidence 999999999999999999999 8999999999999999999999999999999998 78999999999999
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
.|++++|+..|+++++..|++..++..+|.++...|++++|+..|++++++.|++
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999987
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=236.88 Aligned_cols=270 Identities=15% Similarity=0.096 Sum_probs=232.0
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...|++++|+..|+++++..|.. ..++..+|.++...|++++|+..|++++..+|++..++..++
T Consensus 71 ~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~- 140 (365)
T 4eqf_A 71 EGLKRLKEGDLPVTILFMEAAILQDPGD---------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA- 140 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH-
Confidence 4778999999999999999999644332 268999999999999999999999999999999988865555
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHH----------HHHHHhcCChHHHHHHHHHHHHhCcc--cHHHHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLL----------GHEYMEMKNTNAAIQCYRQAIEINNL--DYRAWYG 149 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~ 149 (349)
.++...|++++|+..++++++..|++..++..+ |.++...|++++|+..|+++++..|. ++.++..
T Consensus 141 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 --VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred --HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 445567999999999999999999877666554 99999999999999999999999999 8999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHH
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETE 229 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (349)
+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCC---CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 230 AAADLFMEFVSKLDTFAAPP---DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 230 ~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
+|+..|++++.+.|...... .......+|..++.++...|+.+.+..+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999998732110 0112468899999999999999999888776443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=238.41 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=232.4
Q ss_pred HhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCccc
Q psy9209 65 CLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN-TNAAIQCYRQAIEINNLD 143 (349)
Q Consensus 65 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~ 143 (349)
++..+|++..++..++.+ +...|++++|+..+++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++
T Consensus 89 ai~~~p~~~~a~~~lg~~---~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAV---LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp EECCCHHHHHHHHHHHHH---HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred hhhCChhhHHHHHHHHHH---HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 456788888887666655 4556999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 223 (349)
..+|+++|.++..+|++++|+..|+++++++|++..+|..+|.++...|++++|+.+|+++++++|.+..+|+.+|.++.
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-cCcHHHH-----HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC--CHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 224 K-LNETEAA-----ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN--NLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 224 ~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
. .|..++| +..|++++.++|+ +..+|+.+|.++...| ++++|+..++++ +.+|++..++..+
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~---------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~L 315 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPH---------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFL 315 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHH
Confidence 9 5665777 5999999999999 7999999999999988 799999999998 9999999999999
Q ss_pred HHHHHHcC--------C-CCCchhHHHHh-hhcCCCCCCccccC
Q psy9209 296 RSIAQKRQ--------P-DESSSQPMECA-VVLDPVPPSTRSSK 329 (349)
Q Consensus 296 ~~~~~~~~--------~-~~~A~~~~~~a-~~~~p~~~~~~~~~ 329 (349)
+.++..+| + .++|+.+|+++ ++++|.....|..+
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999885 2 48899999999 99999887665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=227.96 Aligned_cols=274 Identities=14% Similarity=0.126 Sum_probs=239.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
+|..+...|++++|+..|+++++..+.. ..++..+|.++...|++++|+..++++++.+|++..++..++
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la- 96 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPER---------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA- 96 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH-
Confidence 4778899999999999999999644332 267899999999999999999999999999999988765555
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHhCcccHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLL--------------GH-EYMEMKNTNAAIQCYRQAIEINNLDYRA 146 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 146 (349)
..+...|++++|+..+++++...|.....+..+ +. ++...|++++|+..++++++..|.++.+
T Consensus 97 --~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 97 --VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred --HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 445567999999999999999999988777776 66 6889999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 226 (349)
+..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccccCCCCC---CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 227 ETEAAADLFMEFVSKLDTFAAPPD---KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
++++|+..+++++...|....... ......++..+|.++...|++++|...++++++..|+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999999999999887210000 1115789999999999999999999999988776543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=211.48 Aligned_cols=200 Identities=17% Similarity=0.093 Sum_probs=172.0
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 187 AFEKQ-----------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 187 ~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ . .+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~---------~~ 151 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D---------TP 151 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---------CH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c---------ch
Confidence 99999 999999999999999999999999999999999999999999999999988 6 78
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhh
Q psy9209 256 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAV 316 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 316 (349)
.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++-
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=216.35 Aligned_cols=257 Identities=14% Similarity=0.050 Sum_probs=224.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc----HHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY----LGVWTLL 116 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l 116 (349)
.++.+|.+++..|++++|+..|+++++.+|++..++..++. ++...|++++|+..++++++ .|.+ ..++..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~---~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV---CYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH---HHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH---HHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 57889999999999999999999999999998877555554 56667999999999999999 4433 4458999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISE 196 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (349)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|......+++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999955555679999
Q ss_pred HHHHHHHHHccccccHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH
Q psy9209 197 AMKCYNKSRAIGDADGKALFKLAKLYDKLNE---TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT 273 (349)
Q Consensus 197 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (349)
|+..|+++++..|+++.++..+|.++...|+ +++|+..+++++......+... ......++..+|.++...|++++
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999 9999999999999873310000 11235789999999999999999
Q ss_pred HHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 274 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
|+.+++++++++|+++.++..++.+....
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 99999999999999999999888776544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=225.17 Aligned_cols=304 Identities=17% Similarity=0.139 Sum_probs=252.8
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh---chHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~ 78 (349)
+|.++...|++++|+..|+++++..+. +......++..+|.++...|++++|+.++++++...+ +.+.....
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 578899999999999999999964221 2222236799999999999999999999999987732 23333344
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCccc------HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNY------LGVWTLLGHEYMEMKN--------------------TNAAIQC 132 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~--------------------~~~A~~~ 132 (349)
+..++.++...|++++|+.++++++.+.|.. ..++..+|.++...|+ +++|+..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5566677777899999999999999987654 4588999999999999 9999999
Q ss_pred HHHHHHh------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHhhCHHHHHHH
Q psy9209 133 YRQAIEI------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR------MLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 133 ~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~ 200 (349)
+++++.+ .|....++..+|.++...|++++|+.++++++++.|.... ++..+|.++...|++++|+.+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999887 3445678999999999999999999999999988665443 889999999999999999999
Q ss_pred HHHHHcccccc------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH
Q psy9209 201 YNKSRAIGDAD------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274 (349)
Q Consensus 201 ~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (349)
+++++...|.. ..++..+|.++...|++++|+..+++++...+. ....+....++..+|.++...|++++|
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999886654 778899999999999999999999999998776 333444688999999999999999999
Q ss_pred HHHHHHHHccc------CChHHHHHHHHHHHHHcCCCCCchhHHH
Q psy9209 275 YKCAQKCLQHE------ETAEEAKSLLRSIAQKRQPDESSSQPME 313 (349)
Q Consensus 275 ~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 313 (349)
+.++++++++. +....++..++.++...|+...+...+.
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 99999999873 3457788899999999998865444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-31 Score=210.21 Aligned_cols=238 Identities=15% Similarity=0.120 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc-------HHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY-------LGV 112 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 112 (349)
..+..+|.++...|++++|+.+|++++..+ .++.++..+ +.++...|++++|+..++++++..|+. +.+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~---~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNR---AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHH---HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHH---HHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 578889999999999999999999999888 666664444 455566799999999999999988876 688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
+..+|.++...|++++|+..|++++.+.|. +.++...|++++|+..+++++..+|.++.++..+|.++...|
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998876 456777888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|. .+.++..+|.++...|+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---------FVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH---------HHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999999998888 7889999999999999999
Q ss_pred HHHHHHHHHHccc------CChHHHHHHHHHH
Q psy9209 273 TAYKCAQKCLQHE------ETAEEAKSLLRSI 298 (349)
Q Consensus 273 ~A~~~~~~a~~~~------~~~~~~~~~l~~~ 298 (349)
+|+.++++++++. |++..++..++.+
T Consensus 225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 225 SALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999988 8888888777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=214.85 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=220.5
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc----HHHHHHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD----YRAWYGLGQTY 154 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~ 154 (349)
+...+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.+ ..++..+|.++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence 344556677789999999999999999999999999999999999999999999999999 4433 45699999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
...|++++|+.+++++++.+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|......+++++|+..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999555555699999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC---HHHHHHHHHHHHccc---CC-----hHHHHHHHHHHHHHcC
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN---LDTAYKCAQKCLQHE---ET-----AEEAKSLLRSIAQKRQ 303 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~---~~-----~~~~~~~l~~~~~~~~ 303 (349)
|+++++..|. ...++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.++...|
T Consensus 165 ~~~a~~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 165 FVKVLELKPN---------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHSTT---------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcc---------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999998 78999999999999999 999999999999875 44 2368889999999999
Q ss_pred CCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 304 PDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
++++|+.+|+++++++|+++.++..+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999999877654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-31 Score=205.50 Aligned_cols=185 Identities=17% Similarity=0.128 Sum_probs=101.1
Q ss_pred CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---------
Q psy9209 87 QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL--------- 157 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------- 157 (349)
...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 33455555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred --CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 158 --RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 158 --~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666555 55556666666666666666666666
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
++++...|+ .+.++..+|.++...|++++|+..++++
T Consensus 175 ~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 175 AKALEQAPK---------DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHSTT---------CHHHHHHHHHHHTC--------------
T ss_pred HHHHHhCCC---------ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666665555 4555666666666666666666555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=207.34 Aligned_cols=230 Identities=12% Similarity=0.092 Sum_probs=216.0
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-------HHHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-------YRAWYGLG 151 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~ 151 (349)
+..++..+...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|.. +.++..+|
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 4445566666799999999999999999 889999999999999999999999999999998876 79999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHH
Q psy9209 152 QTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 231 (349)
.++...|++++|+.++++++...|. +.++...|++++|+..+++++..+|..+.++..+|.++...|++++|
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999887 56788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhH
Q psy9209 232 ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQP 311 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 311 (349)
+..+++++...|. .+.++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+..
T Consensus 159 ~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 159 VKAYTEMIKRAPE---------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCcc---------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC------CCCCCcc
Q psy9209 312 MECAVVLD------PVPPSTR 326 (349)
Q Consensus 312 ~~~a~~~~------p~~~~~~ 326 (349)
++++++++ |++..++
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREID 250 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhChhhcCCCchHHHH
Confidence 99999999 7665443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=205.93 Aligned_cols=260 Identities=11% Similarity=0.054 Sum_probs=214.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhchH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC
Q psy9209 46 ANHHLKANNLDTAYKCAQKCLQHEETAE-EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK 124 (349)
Q Consensus 46 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 124 (349)
.+..+..|++.+|+..++++...+|++. +....+ +.++...|+++.|+..++. .+|....++..++..+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l---~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFL---YRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHH---HHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHH---HHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCC
Confidence 3456778999999999988888888763 343333 3455556899999887765 25556778888888999999
Q ss_pred ChHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHH
Q psy9209 125 NTNAAIQCYRQAIEI--NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202 (349)
Q Consensus 125 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (349)
++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++..+|++++|+..++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998875 588899999999999999999999998887 7888999999999999999999999999
Q ss_pred HHHccccccHHHHHHHH--HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 203 KSRAIGDADGKALFKLA--KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 203 ~a~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
++++.+|++.......+ .++...|++++|+..|++++...|. .+.+++.+|.++...|++++|...+++
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP---------TLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC---------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998888764443333 3344568899999999999998887 788999999999999999999999999
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCC-chhHHHHhhhcCCCCCCc
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDES-SSQPMECAVVLDPVPPST 325 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~a~~~~p~~~~~ 325 (349)
+++.+|++++++..++.++...|+.++ +..+++++++++|+++.+
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999998876 567889999999988754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=204.61 Aligned_cols=263 Identities=11% Similarity=-0.019 Sum_probs=224.0
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
.+-.+..|+|.+|+..++++. ..+|+.. ......++++|...|+++.|+..++.. +|... ..+..+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~------~~~p~~~--~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~---~a~~~l 71 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK------PSSPERD--VERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL---QAVRMF 71 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC------CCSHHHH--HHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc------cCCchhh--HHHHHHHHHHHHHCCCHHHHHHHhccc---CChhH---HHHHHH
Confidence 345677899999999887654 2223221 135677899999999999999877652 33333 345556
Q ss_pred HHhcCCCcchHHHHHHHHHHHhh--CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKL--NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
+..+...++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++..+|++
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCH
Confidence 66777789999999999999876 699999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHH--HHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALG--EAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
++|+..++++++.+|++.......+ .++...|++++|+..|+++++..|+++.+++.+|.++..+|++++|+..|+++
T Consensus 147 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999998765444333 33344589999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH-HHHHHHHHHcccCChHHHHH
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT-AYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~ 293 (349)
+..+|+ ++.++.++|.++...|+..+ +..+++++++.+|+++.+..
T Consensus 227 l~~~p~---------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 227 LDKDSG---------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHCTT---------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCC---------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999 89999999999999999976 57899999999999987664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=223.34 Aligned_cols=281 Identities=15% Similarity=0.105 Sum_probs=245.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHH-HHHHHHHHhcCCCcchHHHHHHHHHHHhh------CcccH
Q psy9209 38 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK-SLLRSIAQKRQPDESSSQAVLYFQRALKL------NPNYL 110 (349)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~ 110 (349)
....+..+|..+...|++++|+..|+++++..|+++... ..+..++.++...|++++|+.++++++.+ .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 346788999999999999999999999999999876532 34556666677789999999999999988 56778
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhCC-----------------HHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEI------NNLDYRAWYGLGQTYEILRL-----------------PYYGLYYY 167 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 167 (349)
.++..+|.++...|++++|+.+++++++. .+....++..+|.++...|+ +++|+.++
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999998 56667899999999999999 99999999
Q ss_pred HHHHhcC------CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccH------HHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 168 KQAHMVR------PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG------KALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 168 ~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
++++.+. +....++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9998763 23346889999999999999999999999999876543 38899999999999999999999
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC------hHHHHHHHHHHHHHcCCCCCch
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET------AEEAKSLLRSIAQKRQPDESSS 309 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~ 309 (349)
++++...+. .........++..+|.++...|++++|+.++++++.+.+. ...++..++.++...|++++|.
T Consensus 287 ~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 287 KRTLALAVE---LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999886 3333445889999999999999999999999999987543 3568889999999999999999
Q ss_pred hHHHHhhhcCCC
Q psy9209 310 QPMECAVVLDPV 321 (349)
Q Consensus 310 ~~~~~a~~~~p~ 321 (349)
.++++++++.+.
T Consensus 364 ~~~~~al~~~~~ 375 (411)
T 4a1s_A 364 KYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHCCH
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=219.76 Aligned_cols=280 Identities=15% Similarity=0.142 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHhh------CcccHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYFQRALKL------NPNYLGV 112 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ 112 (349)
..+..+|..+...|++++|+..|++++...|+++.. ...+..++..+...|++++|+.++++++.+ .|....+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 578899999999999999999999999998887653 234556677777789999999999999887 3455778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCC--------------------HHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRL--------------------PYYGLYY 166 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~ 166 (349)
+..+|.++...|++++|+..+++++++.|.. ..++..+|.++...|+ +++|+.+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999986654 5589999999999999 9999999
Q ss_pred HHHHHhc------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccH------HHHHHHHHHHHhcCcHHHHHHH
Q psy9209 167 YKQAHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG------KALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 167 ~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
+++++.+ .|....++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999886 333456889999999999999999999999998865543 3899999999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC------hHHHHHHHHHHHHHcCCCCCc
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET------AEEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A 308 (349)
+++++...+. .........++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|++++|
T Consensus 250 ~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 250 YKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHh---CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998887 3334445889999999999999999999999999987543 267888999999999999999
Q ss_pred hhHHHHhhhcCCCC
Q psy9209 309 SQPMECAVVLDPVP 322 (349)
Q Consensus 309 ~~~~~~a~~~~p~~ 322 (349)
+.++++++++.+..
T Consensus 327 ~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 327 MHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998875443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=213.86 Aligned_cols=280 Identities=15% Similarity=0.126 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHhh------CcccHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-KSLLRSIAQKRQPDESSSQAVLYFQRALKL------NPNYLGV 112 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ 112 (349)
..+...|..+...|++++|+..|+++++..|+++.. ...+..++..+...|++++|+.++++++.. .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 467889999999999999999999999998887653 234556677777789999999999999887 4455778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCC--------------------HHHHHHH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRL--------------------PYYGLYY 166 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~ 166 (349)
+..+|.++...|++++|+..+++++++.+.. ..++..+|.++...|+ +++|+.+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999975543 4588999999999999 9999999
Q ss_pred HHHHHhc------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc------HHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 167 YKQAHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD------GKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 167 ~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999876 23334688999999999999999999999999885543 34889999999999999999999
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh------HHHHHHHHHHHHHcCCCCCc
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA------EEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A 308 (349)
+++++...+. .........++..+|.++...|++++|+.++++++...+.. ..++..++.++...|++++|
T Consensus 246 ~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 246 YKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHh---hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999998877 33344458899999999999999999999999999875433 55788999999999999999
Q ss_pred hhHHHHhhhcCCCC
Q psy9209 309 SQPMECAVVLDPVP 322 (349)
Q Consensus 309 ~~~~~~a~~~~p~~ 322 (349)
..++++++++.+..
T Consensus 323 ~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 323 MHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=207.32 Aligned_cols=279 Identities=18% Similarity=0.158 Sum_probs=231.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh---chHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~ 78 (349)
+|..+...|++++|+..|+++++..+. +......++..+|.++...|++++|+..+++++...+ +.+.....
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 578899999999999999999964221 2222236789999999999999999999999987632 23333344
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCccc------HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNY------LGVWTLLGHEYMEMKN--------------------TNAAIQC 132 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~--------------------~~~A~~~ 132 (349)
+..++..+...|++++|+..++++++..|.. ..++..+|.++...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 5666677777899999999999999886543 3488999999999999 9999999
Q ss_pred HHHHHHh------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHhhCHHHHHHH
Q psy9209 133 YRQAIEI------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 133 ~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
+++++.. .+....++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999886 334467899999999999999999999999998755433 3889999999999999999999
Q ss_pred HHHHHcccccc------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH
Q psy9209 201 YNKSRAIGDAD------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274 (349)
Q Consensus 201 ~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (349)
+++++...+.. ..++..+|.++...|++++|+..+++++...+. .........++..+|.++...|++++|
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99999886654 678899999999999999999999999998776 223444577899999999999999999
Q ss_pred HHHHHHHHcccCCh
Q psy9209 275 YKCAQKCLQHEETA 288 (349)
Q Consensus 275 ~~~~~~a~~~~~~~ 288 (349)
..++++++++.+..
T Consensus 323 ~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 323 MHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=213.30 Aligned_cols=280 Identities=15% Similarity=0.124 Sum_probs=235.2
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh---chHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~ 78 (349)
.|..+...|++++|+..|+++++..+. +......++..+|.++...|++++|+..+++++.... +.+.....
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 467889999999999999999964221 2222235799999999999999999999999998721 12233334
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhh------CcccHHHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKN-----------------TNAAIQCYRQ 135 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~ 135 (349)
+..++..+...|++++|+.++++++.. .|....++..+|.++...|+ +++|+.++++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555666677789999999999999988 56667789999999999999 9999999999
Q ss_pred HHHhC------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHhhCHHHHHHHHHH
Q psy9209 136 AIEIN------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR------MLTALGEAFEKQEKISEAMKCYNK 203 (349)
Q Consensus 136 a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~ 203 (349)
++++. +....++..+|.++...|++++|+.++++++++.+.... ++..+|.++...|++++|+.++++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 98863 334668999999999999999999999999998765443 889999999999999999999999
Q ss_pred HHcccccc------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHH
Q psy9209 204 SRAIGDAD------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKC 277 (349)
Q Consensus 204 a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 277 (349)
++...+.. ..++..+|.++...|++++|+.++++++...+. .........++..+|.++...|++++|..+
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE---LGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99987643 678899999999999999999999999998776 223344577999999999999999999999
Q ss_pred HHHHHcccCChH
Q psy9209 278 AQKCLQHEETAE 289 (349)
Q Consensus 278 ~~~a~~~~~~~~ 289 (349)
+++++++.+...
T Consensus 366 ~~~al~~~~~~~ 377 (411)
T 4a1s_A 366 AEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=195.27 Aligned_cols=215 Identities=14% Similarity=0.136 Sum_probs=143.4
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
+..++..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 33444555566677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
++++|+.+++++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
+...|. ...++..+|.++...|++++|+.+++++++..|+++.++..++.+....
T Consensus 186 ~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 186 TEQDPG---------HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHCTT---------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHhCcc---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 777666 5667777777777777777777777777777777777776666554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=197.45 Aligned_cols=255 Identities=13% Similarity=0.026 Sum_probs=215.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhh----hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 45 LANHHLKANNLDTAYKCAQKCLQH----EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 45 l~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
++......|++++|+..+++++.. .|.++.++ ..++..+...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLL---YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 87 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHH---HHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 444556678999999999999987 45555554 44555566679999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+++++++..|+++......+.+ ...|++++|+..
T Consensus 88 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998766666544 677999999999
Q ss_pred HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 201 YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 201 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+++++...|.+...+. ++.++...++.++|+..+++++...|.. .+....++..+|.++...|++++|+.+|++
T Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL-----AEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccc-----cccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887766654 7778888899999999999999887751 122478999999999999999999999999
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCCchhHH
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDESSSQPM 312 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 312 (349)
++..+|++... .+.++...|++++|++.+
T Consensus 241 al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999976443 366777888888888877
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-28 Score=182.77 Aligned_cols=174 Identities=18% Similarity=0.244 Sum_probs=154.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy9209 108 NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187 (349)
Q Consensus 108 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 187 (349)
+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
+...++++.|...+.+++...|.++.++..+|.++..+|++++|+..|+++++.+|. .+.++..+|.++..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---------FIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---------hhhHHHHHHHHHHH
Confidence 999999999999999999989988889999999999999999999999999998888 78888999999999
Q ss_pred hCCHHHHHHHHHHHHcccCChHH
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+|++++|+.+|+++++++|+++.
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccCHH
Confidence 99999999999999988887643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=191.69 Aligned_cols=205 Identities=16% Similarity=0.097 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 34444444444444455555555544444444444444444444444455555555555444444444444444444444
Q ss_pred HhhCHHHHHHHHHHHHc--cccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRA--IGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
..|++++|+.++++++. ..|.++.++..+|.++...|++++|+..+++++...|. ...++..+|.++..
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---------QPSVALEMADLLYK 187 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHH
Confidence 44555555555544444 44444444444444444455555555555554444444 34444444555555
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
.|++++|+.+++++++..|.....+..++.++...|++++|...++++++..|+++
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 55555555555554444444444444444444444555555555555444444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=213.55 Aligned_cols=215 Identities=12% Similarity=0.047 Sum_probs=206.4
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNT-NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
+.+++++..+.+.....|..+.+++.+|.++...|++ ++|+..|+++++.+|.++.+|..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4578888899998999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHh---------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc--------CcHHHH
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQ---------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL--------NETEAA 231 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------~~~~~A 231 (349)
++++++|+ ..++..+|.++... |++++|+..|+++++.+|+++.++..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999 79999999999999 9999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhccc---ccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCc
Q psy9209 232 ADLFMEFVSKLD---TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 232 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 308 (349)
+..|++++.++| . .+.++..+|.++...|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 241 ~~~~~~al~~~p~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 241 LSAYAQAEKVDRKASS---------NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHCGGGGG---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccc---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 6 7999999999999999999999999999999999999999999999999999888
Q ss_pred hhHHHH
Q psy9209 309 SQPMEC 314 (349)
Q Consensus 309 ~~~~~~ 314 (349)
+..+.+
T Consensus 312 i~~~~~ 317 (474)
T 4abn_A 312 LESKGK 317 (474)
T ss_dssp HHHTTT
T ss_pred HHHhcc
Confidence 876544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=194.17 Aligned_cols=212 Identities=15% Similarity=0.097 Sum_probs=186.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
.+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|. ...++..+|.++...
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---------DTEARFQFGMCLANE 172 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999988 789999999999999
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
|++++|+..++++++..|++..++..++.++...|++++|+..++++++++|+++.++..+
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=190.84 Aligned_cols=222 Identities=10% Similarity=0.012 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHH-hCcccHHHHHHHHHHHHHh
Q psy9209 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYME-------MKNT-------NAAIQCYRQAIE-INNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~ 157 (349)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455566666666666666666666655542 3554 566666666666 4666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHH-hcCcHHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVRPNDPR-MLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD-KLNETEAAADLF 235 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~ 235 (349)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+.. ..|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666665554 56666666666666666666666666666655555554444432 246666666666
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---cC-ChHHHHHHHHHHHHHcCCCCCchhH
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH---EE-TAEEAKSLLRSIAQKRQPDESSSQP 311 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 311 (349)
++++...|. .+.+|..+|.++...|++++|+..|++++.. .| ....+|..++.+....|+.++|...
T Consensus 193 ~~al~~~p~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 193 ELGLKKYGD---------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666655 4566666666666666666666666666653 33 2455555556666666666666666
Q ss_pred HHHhhhcCCCCC
Q psy9209 312 MECAVVLDPVPP 323 (349)
Q Consensus 312 ~~~a~~~~p~~~ 323 (349)
++++++..|++.
T Consensus 264 ~~~a~~~~p~~~ 275 (308)
T 2ond_A 264 EKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHccccc
Confidence 666666666544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=185.37 Aligned_cols=197 Identities=18% Similarity=0.116 Sum_probs=106.9
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-CCHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL-RLPYYGLYY 166 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~ 166 (349)
..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++... |++++|+.+
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555555555555 555555555
Q ss_pred HHHHHh--cCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-
Q psy9209 167 YKQAHM--VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD- 243 (349)
Q Consensus 167 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 243 (349)
++++++ ..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555555 33444455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 244 TFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
. ....+..++.++...|+.++|..+++.+.+..|+++.+..
T Consensus 180 ~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 180 L---------QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp C---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred C---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 3444555555555555555555555555555555544443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=202.08 Aligned_cols=308 Identities=13% Similarity=0.082 Sum_probs=237.6
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHH--HHHHHHhcCCHHHHH-----------HHHHHHhhhhhc
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKY--LANHHLKANNLDTAY-----------KCAQKCLQHEET 71 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~-----------~~~~~~l~~~~~ 71 (349)
.+...+++++|..+++++.+.++....+++- ..++. ..+.....++++.+. ..++++-. .|.
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~----~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~ 95 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDL----HLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQA 95 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHH----HHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHH----HHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCC
Confidence 3567899999999999987655443222211 12222 222233344444444 55555432 222
Q ss_pred hHH---HHHHHHHHHHhcCCCcchHHHHHHHHHHHhh------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--
Q psy9209 72 AEE---AKSLLRSIAQKRQPDESSSQAVLYFQRALKL------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-- 140 (349)
Q Consensus 72 ~~~---~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 140 (349)
... ....+...|..+...|++++|+.++++++++ .+..+.++..+|.++...|++++|+.++++++++.
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 222 1223344566677789999999999999987 22356789999999999999999999999999973
Q ss_pred -----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHhhCHHHHHHHHHHHHc---
Q psy9209 141 -----NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKCYNKSRA--- 206 (349)
Q Consensus 141 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~--- 206 (349)
+....++..+|.++...|++++|+.++++++++.+... .++.++|.+|...|++++|+.+++++++
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33456899999999999999999999999998855433 5889999999999999999999999999
Q ss_pred --cc-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC---HHHHHHHHHH
Q psy9209 207 --IG-DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN---LDTAYKCAQK 280 (349)
Q Consensus 207 --~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 280 (349)
.+ |..+.++..+|.++..+|++++|+..+++++...+.. . .+.....+..+|.++...|+ +++|+..+++
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---G-DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45 7788999999999999999999999999999986541 1 11133446779999999999 8888888888
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
. ...|....++..+|.++...|++++|..+|++++++...-
T Consensus 332 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 332 K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 6 4456677888999999999999999999999999876553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=183.66 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=169.0
Q ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 142 LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 142 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
+++.+|+++|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++...|..+.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH
Q psy9209 222 YDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301 (349)
Q Consensus 222 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 301 (349)
+...++++.|...+.+++...|. ...++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV---------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 99999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHhhhcCCCCCC
Q psy9209 302 RQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 302 ~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
+|++++|+.+|+++++++|+++.
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccCHH
Confidence 99999999999999999998754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-27 Score=185.58 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=180.4
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
+..++..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 33444445556888888888888888888888888999999999999999999999999988888888999999999999
Q ss_pred CHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHM--VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236 (349)
Q Consensus 159 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 236 (349)
++++|+.++++++. ..|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+..++
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988 7788888888999999999999999999999999888888899999999999999999999999
Q ss_pred HHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
+++...|. ...++..++.++...|++++|..+++++++..|+++.+...+
T Consensus 200 ~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 200 LFAQGGGQ---------NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTSCC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHhCcC---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99888887 688888899999999999999999999999888887766543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=191.75 Aligned_cols=232 Identities=12% Similarity=-0.034 Sum_probs=209.3
Q ss_pred HhcCCCcchHHHHHHHHHHHhh----CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 84 QKRQPDESSSQAVLYFQRALKL----NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
......|++++|+..++++++. .|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 3456679999999999999997 356788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+++|+.+|+++++..|.++.++..+|.++...|++++|+.+++++++..|.++.....++.+ ...|++++|+..+++++
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988766666544 66799999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh----HHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA----EEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
...|. .... ..++.++...++.++|+..+++++...|.. ..++..+|.++...|++++|+..|+++
T Consensus 172 ~~~~~---------~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 172 EKSDK---------EQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHSCC---------CSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCc---------chHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98887 3333 457888889999999999999999887743 788999999999999999999999999
Q ss_pred hhcCCCCCCcc
Q psy9209 316 VVLDPVPPSTR 326 (349)
Q Consensus 316 ~~~~p~~~~~~ 326 (349)
++++|++....
T Consensus 242 l~~~p~~~~~~ 252 (275)
T 1xnf_A 242 VANNVHNFVEH 252 (275)
T ss_dssp HTTCCTTCHHH
T ss_pred HhCCchhHHHH
Confidence 99999876543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-26 Score=184.29 Aligned_cols=218 Identities=18% Similarity=0.174 Sum_probs=148.0
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----h
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----L 157 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~ 157 (349)
+...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .
T Consensus 16 ~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcc
Confidence 3334666666666666665 5555666667777766 677777777777776653 56666677777776 6
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh----cCcHH
Q psy9209 158 RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNETE 229 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~ 229 (349)
+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.++.. .++++
T Consensus 92 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 92 QNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHH
Confidence 7777777777777665 356667777777776 677777777777777654 45666677777766 67777
Q ss_pred HHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH----
Q psy9209 230 AAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK----ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK---- 301 (349)
Q Consensus 230 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---- 301 (349)
+|+.+|+++++.. .+.++..+|.++.. .+++++|+.+|+++++..| +.++..++.++..
T Consensus 168 ~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 168 KALASYDKACDLK-----------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 7777777776652 35666777777777 7777777777777776654 5666777777776
Q ss_pred cCCCCCchhHHHHhhhcCCCCCC
Q psy9209 302 RQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 302 ~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
.+++++|+.+|+++++..|++..
T Consensus 235 ~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SCCSTTHHHHHHHHHHHTCHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777766543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-26 Score=178.42 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=158.7
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
.|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.++.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHh-hCHHHHHHHHHHHHc--cccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHH
Q psy9209 186 EAFEKQ-EKISEAMKCYNKSRA--IGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262 (349)
Q Consensus 186 ~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (349)
.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+..+++++...|. ...++..+|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la 154 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---------FPPAFKELA 154 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CchHHHHHH
Confidence 777777 777777777777777 55556677777777777777777777777777777776 567777777
Q ss_pred HHHHHhCCHHHHHHHHHHHHcccC-ChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCc
Q psy9209 263 NHHLKANNLDTAYKCAQKCLQHEE-TAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPST 325 (349)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 325 (349)
.++...|++++|+.+++++++..| .+...+..++.++...|+.++|..+++.+.+.+|+++..
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 777777777777777777777777 777777777777777777777777777777777776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=204.93 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=200.1
Q ss_pred CHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHH
Q psy9209 54 NLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS-SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQC 132 (349)
Q Consensus 54 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 132 (349)
.+++++..+++.....|.....+. .++..+...|++ ++|+..|+++++.+|+++.++..+|.+|...|++++|+.+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~---~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALM---LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHH---HHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHH---HHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356677777777777787777754 445667778999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh--------hCHH
Q psy9209 133 YRQAIEINNLDYRAWYGLGQTYEIL---------RLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ--------EKIS 195 (349)
Q Consensus 133 ~~~a~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 195 (349)
|+++++++|+ ..++..+|.++... |++++|+..|+++++++|+++.+|..+|.++... |+++
T Consensus 160 ~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9999999998 79999999999999 9999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcccc---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 196 EAMKCYNKSRAIGD---ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 196 ~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
+|+.+|+++++++| .++.+++.+|.++...|++++|+..|++++..+|. ...++..++.++...|+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA---------WPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHH
Q psy9209 273 TAYKCAQKC 281 (349)
Q Consensus 273 ~A~~~~~~a 281 (349)
+|+..+.+.
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 999877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=188.62 Aligned_cols=253 Identities=11% Similarity=0.038 Sum_probs=217.3
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHHHHhc----CCCcch-------HHHHHHHHHHHh-hCcccHHHHHHHHHHHHhc
Q psy9209 56 DTAYKCAQKCLQHEETAEEAKSLLRSIAQKR----QPDESS-------SQAVLYFQRALK-LNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 56 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~----~~~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 123 (349)
++|+..|++++..+|+++.+|..++.+.... ...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 7899999999999999999998887664321 123665 999999999999 7999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hhCHHHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYR-AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK-QEKISEAMKCY 201 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~ 201 (349)
|++++|...|++++++.|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999886 999999999999999999999999999999998888777666544 69999999999
Q ss_pred HHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 202 NKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK---LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 202 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
+++++..|+++.+|..+|.++...|++++|+..|++++.. .|+ ....+|..++..+...|++++|...+
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~--------~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--------KSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG--------GCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH--------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999996 332 15789999999999999999999999
Q ss_pred HHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCcccc
Q psy9209 279 QKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSS 328 (349)
Q Consensus 279 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 328 (349)
+++++..|++...... +.+.. . .+.+.++|+++....-
T Consensus 265 ~~a~~~~p~~~~~~~~-~~~~~---r--------~~~l~~~P~~~~~ln~ 302 (308)
T 2ond_A 265 KRRFTAFREEYEGKET-ALLVD---R--------YKFMDLYPCSASELKA 302 (308)
T ss_dssp HHHHHHTTTTTSSCHH-HHHHT---T--------TCBTTBCSSCHHHHHT
T ss_pred HHHHHHcccccccchH-HHHHH---H--------HHhcccCCCCHHHHHh
Confidence 9999999975433211 22211 1 1567788888776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=180.83 Aligned_cols=229 Identities=19% Similarity=0.205 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHhhCcccHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQP----DESSSQAVLYFQRALKLNPNYLGVWTL 115 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (349)
.+++.+|..+...|++++|+.+|+++++ |+++.++..++ ..+.. .+++++|+.+|+++++.+ ++.++..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg---~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLG---VLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHH---HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHH---HHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 5789999999999999999999999998 66666655555 44555 799999999999999886 7899999
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy9209 116 LGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187 (349)
Q Consensus 116 la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 187 (349)
+|.++.. .+++++|+..|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 9999999 999999999999999874 78999999999999 999999999999999975 68899999999
Q ss_pred HHH----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 188 FEK----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 188 ~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
+.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..+ +.++.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----------~~a~~ 222 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----------GGGCF 222 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----------HHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----------HHHHH
Confidence 999 999999999999999874 57899999999999 9999999999999998743 67899
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 260 YLANHHLK----ANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 260 ~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
.+|.++.. .+++++|+.+|+++++..|+....+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999 9999999999999999988765443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=197.14 Aligned_cols=298 Identities=16% Similarity=0.150 Sum_probs=238.6
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH---
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA--- 83 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~--- 83 (349)
...|++++|..+|+++++..|... .+|...+..+...|++++|...|++++...|+ ...|..+....
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~---------~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~~lw~~~~~~~~~~ 92 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSG---------RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRET 92 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-HHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHH
Confidence 567999999999999995444332 68999999999999999999999999999884 44443332110
Q ss_pred ------------------------------------Hhc---------CCCcchHHHHHHHHHHHhhCcccH--HHHHHH
Q psy9209 84 ------------------------------------QKR---------QPDESSSQAVLYFQRALKLNPNYL--GVWTLL 116 (349)
Q Consensus 84 ------------------------------------~~~---------~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l 116 (349)
... ...|++++|..+|+++++ .|... ..|...
T Consensus 93 ~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 93 KGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDY 171 (530)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHH
Confidence 000 014778889999999988 45432 122111
Q ss_pred HHH---------------------------------------------------------------HHh------cCCh-
Q psy9209 117 GHE---------------------------------------------------------------YME------MKNT- 126 (349)
Q Consensus 117 a~~---------------------------------------------------------------~~~------~~~~- 126 (349)
+.. ... .++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 000 000 0121
Q ss_pred ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------hCCHH-------HHHHHHHHHHh-cCCCChHHHHHHHHHH
Q psy9209 127 ---NAAIQCYRQAIEINNLDYRAWYGLGQTYEI-------LRLPY-------YGLYYYKQAHM-VRPNDPRMLTALGEAF 188 (349)
Q Consensus 127 ---~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~l~~~~ 188 (349)
..++..|++++...|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++
T Consensus 252 ~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 366788999999999999999999999886 78887 89999999997 7999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHccccccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH-HH
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDADG-KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH-HL 266 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 266 (349)
...|++++|...|+++++..|.++ .+|..++.++.+.|++++|+..|++++...|. ....+...+.+ +.
T Consensus 332 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~---------~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---------RHHVYVTAALMEYY 402 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC---------CTHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC---------chHHHHHHHHHHHH
Confidence 999999999999999999999875 68999999999999999999999999998775 45566655555 34
Q ss_pred HhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCC
Q psy9209 267 KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 267 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 324 (349)
..|++++|...|+++++..|+++.++..++.++...|+.++|...|++++...|.++.
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 6899999999999999999999999999999999999999999999999998877665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-25 Score=191.68 Aligned_cols=211 Identities=18% Similarity=0.155 Sum_probs=140.6
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRLPY 161 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~ 161 (349)
+++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .++++
T Consensus 201 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 201 RNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHH
Confidence 4444444444444432 233444455555543 44555555555555443 234555666666665 56666
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHh-----hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC---cHHHHHH
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQ-----EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN---ETEAAAD 233 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~ 233 (349)
+|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++++.. ++.+++.+|.++...| ++++|+.
T Consensus 277 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 277 KALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 666666666543 4556666667666665 66777777777766543 4566777777776655 6777777
Q ss_pred HHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH----cCCC
Q psy9209 234 LFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK----ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK----RQPD 305 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~ 305 (349)
+|+++++. . .+.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++
T Consensus 353 ~~~~a~~~--~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 353 WFRKAAAK--G---------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHT--T---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHC--C---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 77777765 2 57888889999888 78999999999998875 457888889999888 7888
Q ss_pred CCchhHHHHhhhcCCC
Q psy9209 306 ESSSQPMECAVVLDPV 321 (349)
Q Consensus 306 ~~A~~~~~~a~~~~p~ 321 (349)
++|..+|+++++.+|+
T Consensus 420 ~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCC
Confidence 9999999999988854
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=209.52 Aligned_cols=174 Identities=17% Similarity=0.133 Sum_probs=136.8
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
..|++++++.++|.++..+|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35777777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+ ...++.++|.+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---------~~~a~~~L~~~ 154 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---------FPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------CHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHhhhhhH
Confidence 888888888888888888888888888888888888888888888888888888887777 67778888888
Q ss_pred HHHhCCHHHHHHHHHHHHcccCC
Q psy9209 265 HLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
+...|++++|.+.+++++++.|+
T Consensus 155 l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhChh
Confidence 88888888888888777766543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-24 Score=189.13 Aligned_cols=256 Identities=15% Similarity=0.110 Sum_probs=156.0
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhCcccHHHHHH
Q psy9209 41 AFKYLANHHLK----ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK-RQPDESSSQAVLYFQRALKLNPNYLGVWTL 115 (349)
Q Consensus 41 ~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (349)
+++.+|.+|.. .+++++|+.+|+++... +++.+...++.+... ....+++++|+.+|+++++. .++.++..
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~ 188 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 34445555444 44555555555554432 233333333322111 00134555555555555543 24555555
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy9209 116 LGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRLPYYGLYYYKQAHMVRPNDPRMLTALGEA 187 (349)
Q Consensus 116 la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 187 (349)
+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 264 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 5555555 55555566655555543 234555566666654 55666666666666553 445666667776
Q ss_pred HHH----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcccccCCCCCCcchHHHH
Q psy9209 188 FEK----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL-----NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAF 258 (349)
Q Consensus 188 ~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
+.. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+.. .+.++
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-----------~~~a~ 331 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-----------DATAQ 331 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-----------CHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-----------CHHHH
Confidence 666 66777777777776654 3466777777777766 67777777777776642 35677
Q ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHcccCChHHHHHHHHHHHHH----cCCCCCchhHHHHhhhcC
Q psy9209 259 KYLANHHLKAN---NLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK----RQPDESSSQPMECAVVLD 319 (349)
Q Consensus 259 ~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~ 319 (349)
+.+|.+|...| ++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++++..
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 78888887755 778888888888776 567788888888887 778888888888887753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-26 Score=178.49 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=179.0
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNP-NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 157 (349)
+...|..+...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM 89 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 44455566677999999999999999998 88899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc--cHHHHHHHHHHHHhcCcH
Q psy9209 158 RLPYYGLYYYKQAHMVRPNDP-------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA--DGKALFKLAKLYDKLNET 228 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~ 228 (349)
|++++|+..++++++..|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++...|+
T Consensus 90 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~- 168 (228)
T 4i17_A 90 KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA- 168 (228)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-
Confidence 999999999999999999998 66999999999999999999999999999999 89999999999977654
Q ss_pred HHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH
Q psy9209 229 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301 (349)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 301 (349)
..++++..+.+. .... ..+......+.+++|+.+++++++++|+++.+...++.+...
T Consensus 169 ----~~~~~a~~~~~~---------~~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 169 ----DVLRKATPLASS---------NKEK--YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp ----HHHHHHGGGTTT---------CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred ----HHHHHHHhcccC---------CHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 445666666554 2222 244455667889999999999999999999999988887643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=192.46 Aligned_cols=237 Identities=15% Similarity=0.097 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc-------c
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQH---EETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN-------Y 109 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~ 109 (349)
..++.+|..+...|++++|+..+++++.. .++.......+..+|.++...|++++|+.++++++++.+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 45677999999999999999999999987 2334434445667777788889999999999999988443 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cC-CCC
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRLPYYGLYYYKQAHM-----VR-PND 177 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~ 177 (349)
..++..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|...|++++|+.+++++++ .+ |..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 5688999999999999999999999999885543 36899999999999999999999999999 45 777
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccc-----cccHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcccccCCCC
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIG-----DADGKALFKLAKLYDKLNE---TEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
+.++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +++|+..+++. ...|.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~----- 337 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYAD----- 337 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHH-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHH-----
Confidence 8899999999999999999999999999884 3334446779999999999 77777777766 33333
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
...++..+|.+|...|++++|..++++++++..
T Consensus 338 ----~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 ----LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999988653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=207.32 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=169.5
Q ss_pred hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH
Q psy9209 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218 (349)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 218 (349)
..|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
|.++..+|++++|+..|+++++++|+ ...++.++|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~---------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA---------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 99999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 299 AQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 299 ~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
+..+|++++|.+.+++++++.|+.
T Consensus 155 l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-25 Score=187.32 Aligned_cols=304 Identities=14% Similarity=0.090 Sum_probs=231.6
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHH--HHHhcCCHHHHH---------HHHHHHhhh-hh-chH
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN--HHLKANNLDTAY---------KCAQKCLQH-EE-TAE 73 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~---------~~~~~~l~~-~~-~~~ 73 (349)
...+++++|..+++++....+....+.+ . ..++.+.. .....+.+..+. ..++++-.. .+ +..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~--~--~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 98 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQD--L--LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHH--H--HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHH--H--HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH
Confidence 6789999999999988765544332221 1 12222222 122223333333 444443222 11 222
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-----
Q psy9209 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNP------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL----- 142 (349)
Q Consensus 74 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----- 142 (349)
.....+...|..+...|++++|+..|++++.+.+ ..+.++..+|.++...|++++|+.++++++++.+.
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 2233344556667778999999999999998742 34678899999999999999999999999987442
Q ss_pred --cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHc-----ccc
Q psy9209 143 --DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN------DPRMLTALGEAFEKQEKISEAMKCYNKSRA-----IGD 209 (349)
Q Consensus 143 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~ 209 (349)
...++..+|.++...|++++|+.++++++++.+. ...++.++|.++...|++++|+.++++++. .+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 3567889999999999999999999999987432 236788999999999999999999999999 788
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC---HHHHHHHHHHHHcccC
Q psy9209 210 ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN---LDTAYKCAQKCLQHEE 286 (349)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 286 (349)
..+.++..+|.++...|++++|+.++++++...+.. . .+.....+..++.++...|+ +.+|+.++++ ....|
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~-~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~ 333 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---S-HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHA 333 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---C-CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChh
Confidence 888999999999999999999999999999987652 1 22345567888999999999 8889888887 34455
Q ss_pred ChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 287 TAEEAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
........+|.++...|++++|..+|+++++..
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 667788899999999999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=196.50 Aligned_cols=222 Identities=11% Similarity=0.025 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHH-hCcccHHHHHHHHHHHHHh
Q psy9209 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYME-------MKNTN-------AAIQCYRQAIE-INNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~ 157 (349)
.+++..|++++...|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 367789999999999999999999999986 79987 99999999997 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcCcHHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVRPNDP-RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLNETEAAADLF 235 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~ 235 (349)
|++++|...|+++++..|.++ .+|..+|.++...|++++|...|+++++..|.....+...+.+ +...|++++|...|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999986 6999999999999999999999999999998887777776665 34689999999999
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh----HHHHHHHHHHHHHcCCCCCchhH
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA----EEAKSLLRSIAQKRQPDESSSQP 311 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 311 (349)
+++++..|+ .+.+|..++.++...|+.++|...|++++...|.+ ..+|..........|+.+.+..+
T Consensus 415 e~al~~~p~---------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 415 ELGLKKYGD---------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHCCC---------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 79999999999999999999999999999986544 34787888888889999999999
Q ss_pred HHHhhhcCCCCC
Q psy9209 312 MECAVVLDPVPP 323 (349)
Q Consensus 312 ~~~a~~~~p~~~ 323 (349)
++++++..|++.
T Consensus 486 ~~r~~~~~p~~~ 497 (530)
T 2ooe_A 486 EKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHCchhc
Confidence 999999999643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=185.05 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=176.3
Q ss_pred CCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh-----chHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--
Q psy9209 33 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE-----TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL-- 105 (349)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~-- 105 (349)
++......++..+|.++...|++++|+.+++++++... +.+.....+..++.++...|++++|+.++++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33444457899999999999999999999999998521 22333334555556666679999999999999877
Q ss_pred ------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 106 ------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN--------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 106 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667788899999999999999999999998873 6667788889999999999999999999988
Q ss_pred hc--------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc---------c------HHHHHHHHHHHHhcCcH
Q psy9209 172 MV--------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA---------D------GKALFKLAKLYDKLNET 228 (349)
Q Consensus 172 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~------~~~~~~l~~~~~~~~~~ 228 (349)
.. .|....++..+|.++...|++++|+.+++++++..|. . ...+..++..+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 87 5556678888899999999999999999988876432 1 22233334444455556
Q ss_pred HHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 229 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 229 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.+|...++++....|. ...++..+|.++...|++++|+.++++++++.|.
T Consensus 261 ~~a~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPT---------VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCCC---------CHH---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCCCch---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6666667776666665 6777778888888888888888888887776653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-25 Score=172.04 Aligned_cols=208 Identities=17% Similarity=0.107 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEE-TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
..++.+|.+++..|++++|+..|++++..+| .+...+.. ++.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYN---CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHH---HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHH---HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 6899999999999999999999999999998 77766544 4556666799999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDY-------RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTALGEAFE 189 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~ 189 (349)
++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999988 67999999999999999999999999999999 9999999999998
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
..|+ ..++++..+.+.....+ .+......+.+++|+.++++++++.|+ ...+...++.+..
T Consensus 165 ~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~---------~~~~~~~l~~i~~ 225 (228)
T 4i17_A 165 NNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPN---------RTEIKQMQDQVKA 225 (228)
T ss_dssp HHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHT
T ss_pred HHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCC---------CHHHHHHHHHHHH
Confidence 7764 45666777766554443 344456678899999999999999998 7888877776643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=187.96 Aligned_cols=250 Identities=15% Similarity=0.095 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----
Q psy9209 72 AEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL--------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI---- 139 (349)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 139 (349)
++.....+..++..+...|++++|+.++++++++ .|....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3333444556666677789999999999999985 6777889999999999999999999999999987
Q ss_pred ----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 140 ----NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR--------PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 140 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999874 455678999999999999999999999999998
Q ss_pred --------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCC------CCCCcchHHHHHHHHHHHHHhCCHHH
Q psy9209 208 --------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAA------PPDKTCGFFAFKYLANHHLKANNLDT 273 (349)
Q Consensus 208 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (349)
.|....++..+|.++...|++++|+..+++++...+.... ..........+..++..+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 7777889999999999999999999999999987543110 01111134445555666667778888
Q ss_pred HHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 274 AYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 274 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
|...++++....|....++..+|.++...|++++|+.+|++++++.|+
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 888999999999999999999999999999999999999999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=175.79 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=152.4
Q ss_pred hhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---
Q psy9209 104 KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND--- 177 (349)
Q Consensus 104 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 177 (349)
...|.++..++.+|..+...|++++|+..|+++++..|.+ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3456666777777777777777777777777777776666 6677777777777777777777777777776644
Q ss_pred hHHHHHHHHHHHH--------hhCHHHHHHHHHHHHccccccHHHH-----------------HHHHHHHHhcCcHHHHH
Q psy9209 178 PRMLTALGEAFEK--------QEKISEAMKCYNKSRAIGDADGKAL-----------------FKLAKLYDKLNETEAAA 232 (349)
Q Consensus 178 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~ 232 (349)
+.+++.+|.++.. .|++++|+..|++++...|+++.+. +.+|.++...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3566677777777 7777777777777777766654444 88999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHcccCChH---HHHHHHHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA----------NNLDTAYKCAQKCLQHEETAE---EAKSLLRSIA 299 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~ 299 (349)
..|++++...|+ .+....+++.+|.++... |++++|+..|+++++..|+++ .+...++.+.
T Consensus 169 ~~~~~~l~~~p~------~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 169 VTYEAVFDAYPD------TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHHHHCTT------STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC------CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 999999999887 344678999999999977 999999999999999999874 5666777787
Q ss_pred HHcCCCCCch
Q psy9209 300 QKRQPDESSS 309 (349)
Q Consensus 300 ~~~~~~~~A~ 309 (349)
...++++++.
T Consensus 243 ~~~~~~~~~~ 252 (261)
T 3qky_A 243 QRLTELEGDA 252 (261)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHhhhhh
Confidence 7777665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=181.20 Aligned_cols=237 Identities=11% Similarity=0.089 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh---hchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc-------
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHE---ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN------- 108 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------- 108 (349)
+..++.+|..+...|++++|+..|++++... ++.+.....+..+|.++...|++++|+.++++++++.+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 3568889999999999999999999999764 334444555677778888889999999999999987543
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCC
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN------LDYRAWYGLGQTYEILRLPYYGLYYYKQAHM-----VRPND 177 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~ 177 (349)
...++..+|.++...|++++|+.+|++++++.+ ....++.++|.+|...|++++|+.++++++. .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 355788999999999999999999999999743 2356889999999999999999999999999 77878
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccc-----cccHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcccccCCCC
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIG-----DADGKALFKLAKLYDKLNE---TEAAADLFMEFVSKLDTFAAPP 249 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~ 249 (349)
+.++..+|.++...|++++|+.+++++++.. |.....+..++.++...++ +.+|+..+++. ...+.
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~----- 334 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAY----- 334 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHH-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhH-----
Confidence 8999999999999999999999999999873 3345566778888888888 77888777762 22233
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc
Q psy9209 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 285 (349)
....+..+|.+|...|++++|..+|+++++..
T Consensus 335 ----~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 335 ----IEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=175.05 Aligned_cols=225 Identities=14% Similarity=0.030 Sum_probs=182.8
Q ss_pred CHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHhcCChH
Q psy9209 54 NLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTLLGHEYMEMKNTN 127 (349)
Q Consensus 54 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~ 127 (349)
++++|+..|+++.. .+...|++++|+..|++++.+.+. .+.++.++|.+|..+|+++
T Consensus 32 ~~~~A~~~~~~a~~-----------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQAAT-----------------IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHHHH-----------------HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHH-----------------HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 58999999988732 233359999999999999988532 2578899999999999999
Q ss_pred HHHHHHHHHHHhCccc------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHhhCH
Q psy9209 128 AAIQCYRQAIEINNLD------YRAWYGLGQTYEIL-RLPYYGLYYYKQAHMVRPND------PRMLTALGEAFEKQEKI 194 (349)
Q Consensus 128 ~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 194 (349)
+|+.+|++++++.|.. ..++.++|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999987653 56889999999996 99999999999999997754 46788999999999999
Q ss_pred HHHHHHHHHHHccccccHH-------HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH-
Q psy9209 195 SEAMKCYNKSRAIGDADGK-------ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL- 266 (349)
Q Consensus 195 ~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 266 (349)
++|+.+|++++...|.+.. ++..+|.++..+|++++|+..|++++.+.|... . ......+..++..+.
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~-~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---D-SRESNFLKSLIDAVNE 250 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---C-cHHHHHHHHHHHHHHc
Confidence 9999999999999876543 678999999999999999999999999998721 1 112334556676665
Q ss_pred -HhCCHHHHHHHHHHHHcccCChHHHHHHHHHHH
Q psy9209 267 -KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 299 (349)
Q Consensus 267 -~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 299 (349)
..+++++|+..|++++.++|....++..+....
T Consensus 251 ~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp TCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 457899999999999999998877766665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=184.60 Aligned_cols=281 Identities=12% Similarity=0.030 Sum_probs=187.8
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhhhhchHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL---DTAYKCAQKCLQHEETAEEAKSLL 79 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~l 79 (349)
|..+.+.|++++|+..|+++.+. .++ .+++.+|.++...|+. ++|+.+|+++++. ++.+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~-----g~~------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L 75 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAEL-----GYS------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----TCC------TGGGTCC-------------------------------CHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC-----CCH------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH
Confidence 67788999999999999998843 122 3577899999888888 8999999999866 45555555
Q ss_pred HHHHHhcCC--CcchHHHHHHHHHHHhhCcc---------------------------------cHHHHHHHHHHHHhcC
Q psy9209 80 RSIAQKRQP--DESSSQAVLYFQRALKLNPN---------------------------------YLGVWTLLGHEYMEMK 124 (349)
Q Consensus 80 ~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~---------------------------------~~~~~~~la~~~~~~~ 124 (349)
+.+...... .+++++|+.+|+++++..+. ++.+++.+|.+|...+
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 553222110 14889999999999875432 1223344444444444
Q ss_pred ChHHH----HHHHHHHHHhCcccHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh----hC
Q psy9209 125 NTNAA----IQCYRQAIEINNLDYRAWYGLGQTYEILR---LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ----EK 193 (349)
Q Consensus 125 ~~~~A----~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 193 (349)
.++++ ..+++.+... ++.+++.+|.+|...| ++++|+.+|+++.+..|.....++.+|.+|... ++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 33222 2233333332 3448888898888888 889999999999998888888888899888665 68
Q ss_pred HHHHHHHHHHHHccccccHHHHHHHHHH-H--HhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC-
Q psy9209 194 ISEAMKCYNKSRAIGDADGKALFKLAKL-Y--DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN- 269 (349)
Q Consensus 194 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 269 (349)
+++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+.. .+.+++.||.+|. .|
T Consensus 233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-----------~~~A~~~Lg~~y~-~G~ 297 (452)
T 3e4b_A 233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-----------QPRAELLLGKLYY-EGK 297 (452)
T ss_dssp HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHH-HCS
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHH-cCC
Confidence 899999999987 8888999999988 4 56788999999999888543 5788888998887 55
Q ss_pred ----CHHHHHHHHHHHHcccCChHHHHHHHHHHHHH----cCCCCCchhHHHHhhhc
Q psy9209 270 ----NLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK----RQPDESSSQPMECAVVL 318 (349)
Q Consensus 270 ----~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 318 (349)
++++|+.+|+++. +.++.+...+|.++.. ..++++|+.+|+++.+.
T Consensus 298 g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 298 WVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp SSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 8999999999888 7888888999988876 33778888999888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-24 Score=164.92 Aligned_cols=179 Identities=19% Similarity=0.156 Sum_probs=146.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHh
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYG----------------LGQTYEILRLPYYGLYYYKQAHM 172 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~ 172 (349)
.++.+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888 99999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcccccCCCCC
Q psy9209 173 VRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE--TEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
++|+++.++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|+ ...+...+++++...|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK------- 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-------
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-------
Confidence 9999999999999999999999999999999999999999999999999877654 4456667777654433
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
...+++.+|.++...|++++|+.+|++++++.|+.. +...+..+
T Consensus 156 ---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 156 ---MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp ---HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 345778889999999999999999999999999754 33444444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=168.21 Aligned_cols=247 Identities=8% Similarity=0.005 Sum_probs=204.7
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 43 KYLANHHLKANNL-DTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE--SSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 43 ~~l~~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
+.........|.+ ++|+..+.+++.++|++..+|...+.+... .| ++++++..+.+++..+|++..+|...+.+
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~---l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~i 112 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKN---LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH---cccccHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence 3344444555555 689999999999999999988877766544 35 89999999999999999999999999888
Q ss_pred H----Hhc---CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 120 Y----MEM---KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY--YGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 120 ~----~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
+ ... +++++++.++.++++.+|++..+|...+.+....|.++ +++.+++++++.+|.+..+|...+.++..
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 8 666 78899999999999999999999999999999999888 99999999999999999999999999888
Q ss_pred hhC------HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Q psy9209 191 QEK------ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEA-AADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN 263 (349)
Q Consensus 191 ~~~------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (349)
.++ ++++++++.+++..+|.+..+|+.++.++...|+..+ ...++.+++...+. .+..+.++..++.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~al~~la~ 266 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD------QVTSSFALETLAK 266 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT------EESCHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC------CCCCHHHHHHHHH
Confidence 887 8999999999999999999999999999999998655 44566666665410 1226888999999
Q ss_pred HHHHhCCHHHHHHHHHHHHc-ccCChHHHHHHHHHH
Q psy9209 264 HHLKANNLDTAYKCAQKCLQ-HEETAEEAKSLLRSI 298 (349)
Q Consensus 264 ~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~ 298 (349)
++.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 99999999999999999886 799888888776543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-23 Score=164.18 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=212.8
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCcccHHHHHHHHHHH----HHh---CCH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK--NTNAAIQCYRQAIEINNLDYRAWYGLGQTY----EIL---RLP 160 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~----~~~---~~~ 160 (349)
...++|+..+.+++.++|++..+|+..+.++...| ++++++..+.+++..+|++..+|...+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45578999999999999999999999999999999 999999999999999999999999999999 666 789
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH--HHHHHHHHHHccccccHHHHHHHHHHHHhcCc------HHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS--EAMKCYNKSRAIGDADGKALFKLAKLYDKLNE------TEAAA 232 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------~~~A~ 232 (349)
++++.++.++++.+|.+..+|...+.++...|.++ +++.+++++++.+|.+..+|...+.+....+. +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999988 99999
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH-HHHHHHHHHccc---CChHHHHHHHHHHHHHcCCCCCc
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT-AYKCAQKCLQHE---ETAEEAKSLLRSIAQKRQPDESS 308 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A 308 (349)
+++.+++..+|. +..+|+.++.++...|+..+ ...++.+++... |.++.++..++.++...|+.++|
T Consensus 207 ~~~~~aI~~~p~---------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 207 NYVKDKIVKCPQ---------NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHCSS---------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCC---------CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 999999999999 89999999999999998555 556888888776 88999999999999999999999
Q ss_pred hhHHHHhhh-cCCCCCCcc
Q psy9209 309 SQPMECAVV-LDPVPPSTR 326 (349)
Q Consensus 309 ~~~~~~a~~-~~p~~~~~~ 326 (349)
+++|+.+.+ .||.....+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHhccChHHHHHH
Confidence 999999996 799765544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-22 Score=171.91 Aligned_cols=278 Identities=12% Similarity=-0.066 Sum_probs=222.3
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHH---HHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE---AKSL 78 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~ 78 (349)
+|.++...|++++|+..+++++...+. .+......++..+|.++...|++++|+..+++++...|.... ....
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPP----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 577888999999999999999964421 112223357889999999999999999999999987665432 2233
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-----cHH
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLN--------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-----DYR 145 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~ 145 (349)
+..++..+...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5566777777899999999999999875 334567788999999999999999999999998654 356
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHH-----HHHHHHHHhhCHHHHHHHHHHHHcccccc----HHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLT-----ALGEAFEKQEKISEAMKCYNKSRAIGDAD----GKA 214 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~-----~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~ 214 (349)
++..+|.++...|++++|..++++++.+.+. .+..+. ..+.++...|++++|..++++++...|.. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 7889999999999999999999999876332 222222 34566889999999999999999876542 335
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
+..++.++...|++++|...+++++...+. .........++..+|.++...|++++|...+++++...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 778999999999999999999999987665 112222456888999999999999999999999988754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-25 Score=159.58 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=126.6
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
.+|.++...|++++|+..+++++..+|+.+..++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 45677788889999999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH-HHHHHccccccHHHHHHHHHHHHhcCc
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC-YNKSRAIGDADGKALFKLAKLYDKLNE 227 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~a~~~~~~~~~~~~~l~~~~~~~~~ 227 (349)
++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998877665 588999999999998888888888775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=195.75 Aligned_cols=199 Identities=10% Similarity=-0.078 Sum_probs=161.4
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAI--------EINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
.+|+++.+++..| ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4666776766666 67888888888888888 778888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHH
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFF 256 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++ +..|+++++.+|. ...
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~---------~~~ 535 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG---------VIS 535 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT---------CHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc---------hHH
Confidence 888888888888888888888888888888888888888888888888888888 8888888888888 788
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCc-hhHHHHhh
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS-SQPMECAV 316 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~a~ 316 (349)
+++++|.++...|++++|+..|+++++++|++..++..++.++...++.+++ ...+++++
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888888776664444 44444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=174.09 Aligned_cols=217 Identities=14% Similarity=0.073 Sum_probs=177.7
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhCCHHHHH
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL------DYRAWYGLGQTYEILRLPYYGL 164 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~ 164 (349)
++++|+..|+++ |.+|...|++++|+..|++++++.+. ...++.++|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 599999999887 66788999999999999999998432 2678999999999999999999
Q ss_pred HHHHHHHhcCCCC------hHHHHHHHHHHHHh-hCHHHHHHHHHHHHcccccc------HHHHHHHHHHHHhcCcHHHH
Q psy9209 165 YYYKQAHMVRPND------PRMLTALGEAFEKQ-EKISEAMKCYNKSRAIGDAD------GKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 165 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A 231 (349)
.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999987653 35889999999996 99999999999999997754 56789999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCC-cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHH-----HHHHHHHHH--HcC
Q psy9209 232 ADLFMEFVSKLDTFAAPPDK-TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA-----KSLLRSIAQ--KRQ 303 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~l~~~~~--~~~ 303 (349)
+..|++++...|.. ... .....++..+|.++..+|++++|+.+|+++++++|+.... ...++..+. ..+
T Consensus 178 ~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 178 SDIYSKLIKSSMGN---RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHTTSSC---TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcC---CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999998872 111 1234578999999999999999999999999999976543 233445443 356
Q ss_pred CCCCchhHHHHhhhcCCCCCC
Q psy9209 304 PDESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~ 324 (349)
++++|+..|++++.++|....
T Consensus 255 ~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp THHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHH
Confidence 678899999999888886543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=169.47 Aligned_cols=213 Identities=13% Similarity=0.027 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcc---cHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPN---YLGVWTLL 116 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 116 (349)
..++.+|..++..|++++|+..|++++...|+++.....+..++.++...|++++|+..|+++++..|+ .+.+++.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 356666666666666666666666666666555222222333334444455666666666666655443 23455555
Q ss_pred HHHHHh--------cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 117 GHEYME--------MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 117 a~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
|.++.. .|++++|+..|+++++..|++..+...+..+....+.. ...++.+|.+|
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~la~~~ 158 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL-----------------ARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 655555 55555555555555555555443332222221111111 12248889999
Q ss_pred HHhhCHHHHHHHHHHHHccccc---cHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDA---DGKALFKLAKLYDKL----------NETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
...|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+..|++++...|+ ++...
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~ 232 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD------SPLLR 232 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT------CTHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC------ChHHH
Confidence 9999999999999999999887 567899999999877 8999999999999999987 34456
Q ss_pred HHHHHHHHHHHHhCCHHHHH
Q psy9209 256 FAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~ 275 (349)
.+...++.++...++++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 77778888888777766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=193.08 Aligned_cols=188 Identities=13% Similarity=-0.023 Sum_probs=172.6
Q ss_pred hhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH--------hhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy9209 67 QHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRAL--------KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE 138 (349)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 138 (349)
..+|+++.+....+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++
T Consensus 388 ~~~p~~~~a~~~~a------~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 388 LVDPTDVAASVLQA------TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCCTTSTTHHHHHH------TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc------ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34666666544332 45699999999999999 89999999999999999999999999999999999
Q ss_pred hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH
Q psy9209 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218 (349)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 218 (349)
.+|++..+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++ +..|+++++.+|+++.+++++
T Consensus 462 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 462 RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
|.++..+|++++|+..|+++++++|. ...++.++|.++...++
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~---------~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRH---------FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTT---------HHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcc---------cHHHHHHHHHHHHccCC
Confidence 99999999999999999999999998 89999999999987665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-23 Score=172.22 Aligned_cols=277 Identities=9% Similarity=-0.059 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccH------H
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE--AKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYL------G 111 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~ 111 (349)
.++..+|.++...|++++|+..+++++...|.... ....+..++..+...|++++|+..+++++.+.|... .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 56778899999999999999999999987664422 222345556666667999999999999998765432 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----h
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEIN--------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND-----P 178 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~ 178 (349)
++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|..++++++...+.. .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 46889999999999999999999999874 3456678889999999999999999999999987653 3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccc--cHHHH-----HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDA--DGKAL-----FKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
.++..+|.++...|++++|..++++++...+. .+..+ ..++.++...|++++|...+++++...+. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~ 249 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-----NN 249 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT-----TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC-----cc
Confidence 57889999999999999999999999876322 21111 13456688999999999999999876543 11
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC------hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET------AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
......+..+|.++...|++++|...+++++...+. ...++..++.++...|+.++|...+++++.+.+.
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 112446788999999999999999999999876432 2357788999999999999999999999887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=173.21 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=182.2
Q ss_pred CCcchHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CcccHHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKL--------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------NNLDYRAWYGLG 151 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~ 151 (349)
..|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.+++++++. .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 357777777777777763 3566788899999999999999999999999887 466788899999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--------ccccHHHH
Q psy9209 152 QTYEILRLPYYGLYYYKQAHMV--------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--------GDADGKAL 215 (349)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~ 215 (349)
.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.++++++.. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999987 4566788899999999999999999999999988 77778899
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC------HHHHHHHHHHHHcccCChH
Q psy9209 216 FKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN------LDTAYKCAQKCLQHEETAE 289 (349)
Q Consensus 216 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~a~~~~~~~~ 289 (349)
..+|.++...|++++|+..+++++...+........+.....+..++..+...+. +.++...++......|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999998755422222233355667777777666544 4444444444444557778
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHhhhcC
Q psy9209 290 EAKSLLRSIAQKRQPDESSSQPMECAVVLD 319 (349)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 319 (349)
.++..+|.++..+|++++|+.+|+++++..
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 889999999999999999999999998753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-23 Score=176.09 Aligned_cols=281 Identities=12% Similarity=0.081 Sum_probs=197.2
Q ss_pred hhhHHhhCcH---HHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhhhhchHH
Q psy9209 3 NKLYDKLNET---EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN-----NLDTAYKCAQKCLQHEETAEE 74 (349)
Q Consensus 3 a~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~ 74 (349)
|.+|...|+. ++|+.+|+++++. .+ .+++.+|.++...| ++++|+.+|++++...+. .
T Consensus 42 g~~y~~~g~~~d~~~A~~~~~~A~~~------~~------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~--~ 107 (452)
T 3e4b_A 42 ADIQVGTRDPAQIKQAEATYRAAADT------SP------RAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG--N 107 (452)
T ss_dssp C----------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS--S
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHhC------CH------HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH--H
Confidence 5667777777 8999999888832 22 45788888666665 788899999988764322 2
Q ss_pred HHHHHHHHH--------------------------------HhcCCCc----chHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 75 AKSLLRSIA--------------------------------QKRQPDE----SSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 75 ~~~~l~~~~--------------------------------~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
+...++.+. ..+...+ +.+.+..+++.+...+|. +++.+|.
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~ 184 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELAT 184 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHH
Confidence 222232221 1111112 344444555555554444 8899999
Q ss_pred HHHhcC---ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCChHHHHHHHHH-H--
Q psy9209 119 EYMEMK---NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL----RLPYYGLYYYKQAHMVRPNDPRMLTALGEA-F-- 188 (349)
Q Consensus 119 ~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~-- 188 (349)
+|...| ++++|+..|+++.+..|.....++.+|.+|... +++++|+.+|+++. |+++.+++.+|.+ +
T Consensus 185 ~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 185 VYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS
T ss_pred HHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC
Confidence 999999 999999999999999998888889999998765 78999999999988 8899999999998 4
Q ss_pred HHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHH
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN-----ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLAN 263 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (349)
...+++++|+.+|+++.+.. ++.+++.+|.+|. .| ++++|+.+|+++. +. .+.+++.||.
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g---------~~~A~~~Lg~ 326 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR---------EVAADYYLGQ 326 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT---------CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC---------CHHHHHHHHH
Confidence 46889999999999998654 7889999999988 55 8999999999988 55 6899999998
Q ss_pred HHHH----hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH----cCCCCCchhHHHHhhhcCC
Q psy9209 264 HHLK----ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK----RQPDESSSQPMECAVVLDP 320 (349)
Q Consensus 264 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p 320 (349)
+|.. ..++++|+.+|+++.+. .++.+...+|.++.. ..+..+|..+|+++.+..+
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8887 34999999999999874 557788889998874 3467788999988877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=166.55 Aligned_cols=234 Identities=17% Similarity=0.103 Sum_probs=188.3
Q ss_pred HhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-----hchHHHHHHHHH
Q psy9209 7 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE-----ETAEEAKSLLRS 81 (349)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~l~~ 81 (349)
...|++++|+..|+++++....... ++......++..+|.++...|++++|+.++++++... ++++.....+..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 4578899999999999975543322 2223334789999999999999999999999999875 334555556777
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CcccHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKL--------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------NNLDYR 145 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~ 145 (349)
++.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.+++++++. .|....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 778888899999999999999988 5777889999999999999999999999999998 788889
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---------CCCChHHHHHHHHHHHHhhC------HHHHHHHHHHHHccccc
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMV---------RPNDPRMLTALGEAFEKQEK------ISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~a~~~~~~ 210 (349)
++..+|.++...|++++|+.+++++++. .+.....+..++..+...+. +.++...++......|.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999986 45556677777777665443 45555555555555677
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+.++..+|.++...|++++|+..++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-23 Score=154.69 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
..+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
.|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|. ...++..+|.++...|+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---------EGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---------chHHHHHHHHHHHHcCC
Confidence 555555555555555555555555555555555555555555555555555444 34555555555555555
Q ss_pred HHHHHHHHHHHHcccCC
Q psy9209 271 LDTAYKCAQKCLQHEET 287 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~ 287 (349)
+++|..+++++++..|+
T Consensus 160 ~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 160 HEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 55555555555544443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=158.58 Aligned_cols=183 Identities=10% Similarity=0.011 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..++..|..++..|++++|+..|++++..+|+++.++...+ . ... ....+.....+|.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----~---~~~-------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN-----V---DKN-------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHH-----S---CTT-------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhh-----h---cch-------------hhhhHHHHHHHHHH
Confidence 57888999999999999999999999999999888765432 0 000 01123445678999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC--HHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK--ISEA 197 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A 197 (349)
+...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|...|+ ...+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877654 4566
Q ss_pred HHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 198 MKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
...+++++...| ...+++.+|.++...|++++|+..|++++.+.|+
T Consensus 144 ~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 144 ETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 777877765544 3446778899999999999999999999999886
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-24 Score=156.28 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=136.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKI 194 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (349)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHH-HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 195 SEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL-FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 195 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+ ++.++..++.++..+|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~---------~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG---------SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC---------CHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999887765 5999999999 79999999999988885
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-23 Score=154.65 Aligned_cols=174 Identities=13% Similarity=0.039 Sum_probs=167.4
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
....+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc
Q psy9209 223 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302 (349)
Q Consensus 223 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 302 (349)
...|++++|...+++++...|. ...++..+|.++...|++++|+.+++++++..|.++.++..++.++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI---------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHhcCcH---------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 9999999999999999999988 7899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHhhhcCCCCCCc
Q psy9209 303 QPDESSSQPMECAVVLDPVPPST 325 (349)
Q Consensus 303 ~~~~~A~~~~~~a~~~~p~~~~~ 325 (349)
|++++|..+++++++.+|++...
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhh
Confidence 99999999999999999987654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-20 Score=148.77 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=204.7
Q ss_pred HHHhcCCHH-HHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCC-------cchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 48 HHLKANNLD-TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD-------ESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 48 ~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.....|++. +|+..+.+++..+|++..+|...+.+....... ..+++++.++..++..+|++..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334567765 799999999999999999988776665443110 127899999999999999999999999999
Q ss_pred HHhcCC--hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-----
Q psy9209 120 YMEMKN--TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL-PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ----- 191 (349)
Q Consensus 120 ~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 191 (349)
+...|+ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|...+.++...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 999994 8999999999999999999999999999999999 59999999999999999999999999999888
Q ss_pred ---------hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 192 ---------EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL-----------NETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 192 ---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd------- 270 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE------- 270 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-------
Confidence 6799999999999999999999998665555544 4688999999999999998
Q ss_pred cchHHHHHHHHHHHH---HhCCHHHHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 252 TCGFFAFKYLANHHL---KANNLDTAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
...++..++.+.. ..|..++...++.+.++++|.....+.-++.
T Consensus 271 --~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 271 --NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp --CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred --cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 5555544444332 3578889999999999999988777666544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=152.74 Aligned_cols=190 Identities=9% Similarity=-0.074 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH---HHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR---MLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~ 183 (349)
+..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445555555555666666666666665555543 345555566666666666666666666655555543 4555
Q ss_pred HHHHHHH------------------hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Q psy9209 184 LGEAFEK------------------QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTF 245 (349)
Q Consensus 184 l~~~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 245 (349)
+|.++.. .|++++|+..|+++++..|+++.+...+..+.. +...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~-----------------~~~~- 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF-----------------LKDR- 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH-----------------HHHH-
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH-----------------HHHH-
Confidence 5555544 567888888888888888777654432211110 0111
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChH---HHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 246 AAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE---EAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
.......+|.++...|++++|+..|+++++..|+++ .++..++.++..+|++++|+..++++....|++
T Consensus 146 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 --------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 234456778888888888888888888888877654 678888888888888888888888888888876
Q ss_pred CCc
Q psy9209 323 PST 325 (349)
Q Consensus 323 ~~~ 325 (349)
..-
T Consensus 218 ~~~ 220 (225)
T 2yhc_A 218 LEH 220 (225)
T ss_dssp CCC
T ss_pred hhh
Confidence 653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-21 Score=154.00 Aligned_cols=225 Identities=10% Similarity=0.021 Sum_probs=199.5
Q ss_pred cch-HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 90 ESS-SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN----------TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 90 ~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
|.+ ++|+..+.+++.++|++..+|+..+.+....+. +++++.++..++..+|++..+|...+.++...+
T Consensus 43 ~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 43 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp TCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence 454 589999999999999999999999999988776 689999999999999999999999999999999
Q ss_pred C--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC-HHHHHHHHHHHHccccccHHHHHHHHHHHHhc----------
Q psy9209 159 L--PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK-ISEAMKCYNKSRAIGDADGKALFKLAKLYDKL---------- 225 (349)
Q Consensus 159 ~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---------- 225 (349)
+ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|..++.+....
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 5 8999999999999999999999999999999999 69999999999999999999999999998877
Q ss_pred ----CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHcccCChHH
Q psy9209 226 ----NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA-----------NNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 226 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+.++++++++.+++..+|+ +..+|+.+..++... +.++++++.+++++++.|++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~---------d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPN---------DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 5689999999999999999 899998776666665 4689999999999999999865
Q ss_pred HHHHHHHHHH---HcCCCCCchhHHHHhhhcCCCCC
Q psy9209 291 AKSLLRSIAQ---KRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 291 ~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
....++.+.. ..|..++...++.+.+++||...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 5544444332 24556688899999999999754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-22 Score=138.69 Aligned_cols=122 Identities=12% Similarity=0.084 Sum_probs=110.7
Q ss_pred HHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 101 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
++..++|+.+..+..+|..+...|++++|+..|+++++++|.++.++.++|.++..+|++++|+..++++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
+..+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999998888763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=151.16 Aligned_cols=155 Identities=12% Similarity=-0.039 Sum_probs=129.0
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHH---HHH
Q psy9209 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK---ALF 216 (349)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~ 216 (349)
.+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467889999999999999999999999999998875 68999999999999999999999999999998764 788
Q ss_pred HHHHHHHh------------------cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 217 KLAKLYDK------------------LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCA 278 (349)
Q Consensus 217 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (349)
.+|.++.. .|++++|+..|++++...|+. +....+...++.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~------~~a~~a~~~l~~~~~------------ 144 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS------QYTTDATKRLVFLKD------------ 144 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC------TTHHHHHHHHHHHHH------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC------hhHHHHHHHHHHHHH------------
Confidence 99998876 679999999999999999982 222233333333221
Q ss_pred HHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCC
Q psy9209 279 QKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 279 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 323 (349)
........+|.++...|++++|+..|+++++..|+++
T Consensus 145 --------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 145 --------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp --------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred --------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 1122346789999999999999999999999999986
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=147.95 Aligned_cols=169 Identities=9% Similarity=-0.073 Sum_probs=134.4
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
|.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 344456778888888888888888888888888888888888888888888888888888888888888 7766655554
Q ss_pred HHH-HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 187 AFE-KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 187 ~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++++...|.. ....++..+|.++
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA-------QDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-------TTTHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-------ChHHHHHHHHHHH
Confidence 433 33344557888888888888888888888988888899999999998888888761 1256888888888
Q ss_pred HHhCCHHHHHHHHHHHHc
Q psy9209 266 LKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 266 ~~~g~~~~A~~~~~~a~~ 283 (349)
...|+.++|+..|++++.
T Consensus 155 ~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHCSSCHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHH
Confidence 888888888888888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-21 Score=156.69 Aligned_cols=240 Identities=15% Similarity=0.116 Sum_probs=185.6
Q ss_pred hcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH
Q psy9209 51 KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI 130 (349)
Q Consensus 51 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 130 (349)
..|++++|..+++++.+..+.. .+...+++++|+..|.++ |.+|...|++++|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~------------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS------------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC------------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc------------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 4678889999999988766531 111148899999988876 66888999999999
Q ss_pred HHHHHHHHhCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--C----hHHHHHHHHHHHHhhCHHHHH
Q psy9209 131 QCYRQAIEINNLD------YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--D----PRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 131 ~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~ 198 (349)
..|.+++++.+.. ..++..+|.+|...|++++|+.+|++++++.+. + ..++.++|.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9999999986532 568889999999999999999999999988432 2 3678899999998 9999999
Q ss_pred HHHHHHHcccccc------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHH
Q psy9209 199 KCYNKSRAIGDAD------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLD 272 (349)
Q Consensus 199 ~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (349)
.+|++++.+.|.. ..++.++|.++..+|++++|+..|++++.+.|.. ........++..+|.++..+|+++
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM---ENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987643 5788999999999999999999999999988762 222234568889999999999999
Q ss_pred HHHHHHHHHHcccCChH-----HHHHHHHHHHHHcCCCCCchh--HHHHhhhcCCCC
Q psy9209 273 TAYKCAQKCLQHEETAE-----EAKSLLRSIAQKRQPDESSSQ--PMECAVVLDPVP 322 (349)
Q Consensus 273 ~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~--~~~~a~~~~p~~ 322 (349)
+|+.+|++++ +.|... .....++..+ ..|+.+.... .+..+..++|..
T Consensus 213 ~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~~~~ld~~~ 267 (307)
T 2ifu_A 213 AAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDNDY 267 (307)
T ss_dssp HHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCHHH
T ss_pred HHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCchhhhhhHHH
Confidence 9999999999 888543 2233444444 3455432222 134444455443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-20 Score=150.73 Aligned_cols=224 Identities=11% Similarity=0.078 Sum_probs=196.9
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-C-CHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK-NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEIL-R-LPYYGLY 165 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~ 165 (349)
.+..++|+..+.+++.++|++..+|+..+.++...| .+++++..+.+++..+|++..+|...+.++... + ++++++.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 456688999999999999999999999999999999 599999999999999999999999999999998 8 8999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHH--------HHHHHHHHHHccccccHHHHHHHHHHHHhcCc-------HHH
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKIS--------EAMKCYNKSRAIGDADGKALFKLAKLYDKLNE-------TEA 230 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 230 (349)
++.++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+..+|..++.+....+. +++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 999999999999999999999999999888 99999999999999999999999999999887 799
Q ss_pred HHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHccc-----
Q psy9209 231 AADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL--------------------DTAYKCAQKCLQHE----- 285 (349)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~a~~~~----- 285 (349)
+++++.+++..+|. +..+|+.+..++...|+. ..-.......+...
T Consensus 227 ELe~~~~aI~~~P~---------n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 227 ELIYILKSIHLIPH---------NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred HHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 99999999999999 899999999999888764 22333333333222
Q ss_pred -CChHHHHHHHHHHHHHcCCCCCchhHHHHhh-hcCCC
Q psy9209 286 -ETAEEAKSLLRSIAQKRQPDESSSQPMECAV-VLDPV 321 (349)
Q Consensus 286 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~ 321 (349)
+.++.++..++.++...|+.++|.+.++... +.||-
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 4678899999999999999999999999976 66664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=152.75 Aligned_cols=172 Identities=12% Similarity=-0.019 Sum_probs=161.2
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
..|.+...+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34888999999999999999999999999999999999999999999999999999999999999999999777777778
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+. ....++..++.+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-------~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-------ADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-------GGGHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------ccchHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999971 128899999999
Q ss_pred HHHhCCHHHHHHHHHHHHc
Q psy9209 265 HLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~ 283 (349)
+...|+.++|...|++++.
T Consensus 265 ~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=145.98 Aligned_cols=167 Identities=10% Similarity=-0.084 Sum_probs=148.6
Q ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHH
Q psy9209 141 NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220 (349)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 220 (349)
|.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444556789999999999999999999999999999999999999999999999999999999999999 8777666665
Q ss_pred HHH-hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh--HHHHHHHHH
Q psy9209 221 LYD-KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLRS 297 (349)
Q Consensus 221 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~ 297 (349)
+.. ..+...+|+..+++++..+|+ .+.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD---------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 533 333445689999999999998 79999999999999999999999999999999875 569999999
Q ss_pred HHHHcCCCCCchhHHHHhhh
Q psy9209 298 IAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 298 ~~~~~~~~~~A~~~~~~a~~ 317 (349)
++...|+.++|+..|++++.
T Consensus 153 ~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=146.29 Aligned_cols=256 Identities=12% Similarity=0.018 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE-SSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
.++..+.......+..++|+..+.+++..+|++..+|...+.+.... | .+++++..+.+++..+|++..+|...+.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l---~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSL---NKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34555555555666678999999999999999999998877766554 5 6999999999999999999999999999
Q ss_pred HHHhc-C-ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 119 EYMEM-K-NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY--------YGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 119 ~~~~~-~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
++... + ++++++.++.++++.+|++..+|...+.+....|.++ +++++++++++.+|.+..+|...+.++
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99998 8 9999999999999999999999999999999999888 999999999999999999999999999
Q ss_pred HHhhC-------HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHH----------------H-HHHHHHHHhcccc
Q psy9209 189 EKQEK-------ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEA----------------A-ADLFMEFVSKLDT 244 (349)
Q Consensus 189 ~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~----------------A-~~~~~~~~~~~~~ 244 (349)
...++ ++++++++++++..+|++..+|+.+..++...|+... . ...-.-++.....
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 99887 7999999999999999999999998888887776410 0 1111222222211
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH-cccCChHHHHHHHHHH
Q psy9209 245 FAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL-QHEETAEEAKSLLRSI 298 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~ 298 (349)
.+........+.++..|+.+|...|+.++|.++++... +.+|-....|...+..
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 00011224578899999999999999999999999987 7789888888766543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=134.23 Aligned_cols=122 Identities=12% Similarity=-0.006 Sum_probs=115.2
Q ss_pred HHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 135 QAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 135 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
++..++|+....+..+|..+...|++++|+..|+++++++|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHH
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHH 265 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (349)
++.+|.++..+|++++|+..|+++++++|+ +..++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---------~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPS---------NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC---------CHHHHHHHHHhc
Confidence 999999999999999999999999999999 789998888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=151.13 Aligned_cols=170 Identities=8% Similarity=-0.067 Sum_probs=162.0
Q ss_pred hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH
Q psy9209 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218 (349)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 218 (349)
..|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34888999999999999999999999999999999999999999999999999999999999999999999877777778
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh--HHHHHHHH
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA--EEAKSLLR 296 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~ 296 (349)
+..+...++.++|+..+++++..+|+ +..+++.+|.++...|++++|+..|+++++.+|+. ..++..++
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~---------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE---------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc---------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 88888999999999999999999999 89999999999999999999999999999999988 89999999
Q ss_pred HHHHHcCCCCCchhHHHHhhh
Q psy9209 297 SIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 297 ~~~~~~~~~~~A~~~~~~a~~ 317 (349)
.++...|+.++|...|++++.
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=167.88 Aligned_cols=262 Identities=15% Similarity=0.070 Sum_probs=143.4
Q ss_pred hhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy9209 3 NKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 82 (349)
Q Consensus 3 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 82 (349)
|.++...|.+++|..+|+++- . ....+...+...|++++|.++++++ +.+.+|. .+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~------~----------~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWs---qL 1111 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD------V----------NTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWS---QL 1111 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC------C----------HHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHH---HH
Confidence 556667777777777776642 0 0111222233556666666666644 2233433 33
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..+. +.+-..+|.+|.+++++++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH
Confidence 44455556666666666554 45566666666666666666666666666665432 2222235666666665553
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
++.|. ...+...+..+|..+...|+|++|+.+|.++ ..|..+|.++.++|++++|++.++++.
T Consensus 1186 -le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1186 -LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred -HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 22221 1222344555666666666666666666664 356666666666666666666666662
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCC
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 322 (349)
...+|...+.++...|++..|..+... +..+ ++....++..|...|.+++|+..+++++.++|.+
T Consensus 1249 -----------n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1249 -----------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred -----------CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 244555555555555555555554442 2222 2233355555666666666666666666666555
Q ss_pred CCcc
Q psy9209 323 PSTR 326 (349)
Q Consensus 323 ~~~~ 326 (349)
...+
T Consensus 1314 ~gmf 1317 (1630)
T 1xi4_A 1314 MGMF 1317 (1630)
T ss_pred hHHH
Confidence 4433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-20 Score=151.36 Aligned_cols=202 Identities=12% Similarity=-0.008 Sum_probs=156.8
Q ss_pred hhCcHHHHHHHHHHHHHhccccCC--CCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch---HHHHHHHHHH
Q psy9209 8 KLNETEAAADLFMEFVSKLDTFAA--PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA---EEAKSLLRSI 82 (349)
Q Consensus 8 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~ 82 (349)
..|++++|..+++++.+..+...- .++.......+...|.++...|++++|+..|.+++.+.+.. ......+..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 568899999999999876654211 34444444567778888999999999999999998876532 3334456667
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPN------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGL 150 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l 150 (349)
+.++...|++++|+.+|++++++.+. ...++..+|.+|.. |++++|+.+|++++++.|.. ..++.++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77777788999999999998887432 24577888999888 99999999999998876643 5678888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
|.++..+|++++|+.+|++++.+.|.+. .++..+|.++...|++++|+.+|++++ .+|..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 9999999999999999999988765432 467788888888899999999999998 87754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=167.68 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=98.7
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.++++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcccc
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL---NETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~ 244 (349)
+++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|...+++++...|.
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 77777777777777777777777777777777777777777777777777777777 7777777777777776665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=166.57 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=140.8
Q ss_pred cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYN 202 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (349)
.|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh---CCHHHHHHHHH
Q psy9209 203 KSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA---NNLDTAYKCAQ 279 (349)
Q Consensus 203 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~ 279 (349)
++++.+|+++.++..+|.++...|++++|+..|+++++..|+ ...++..+|.++... |++++|...++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE---------EPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 789999999999999 99999999999
Q ss_pred HHHcccCChHHHHHHHH
Q psy9209 280 KCLQHEETAEEAKSLLR 296 (349)
Q Consensus 280 ~a~~~~~~~~~~~~~l~ 296 (349)
++++.+|.....+..++
T Consensus 153 ~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 153 AAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTCCCSCHHHHTT
T ss_pred HHHhcCCcccChHHHhC
Confidence 99999998776666555
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=150.70 Aligned_cols=190 Identities=10% Similarity=0.007 Sum_probs=86.6
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHhCcccHHHHH-------------
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLL-------GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWY------------- 148 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------- 148 (349)
.+++..|.+.|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|.....++
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 3455555555555555555555555555 45555555555555555555555444322222
Q ss_pred --------HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc-ccc-HHHHHHH
Q psy9209 149 --------GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-DAD-GKALFKL 218 (349)
Q Consensus 149 --------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-~~~~~~l 218 (349)
.++.++...|++++|.+.|..++...|++. ..+.+|.++.+.+++++|+..|+++.... |.. ..+++.+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 234444444444444444444444444444 44444444444444444444444443331 111 2244444
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcc--cccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKL--DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
|.++..+|++++|+..|++++... |. ....+++.+|.++..+|+.++|...|++++..+|+
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~--------~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEA--------CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTT--------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCcc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 444444444444444444444211 11 02334444444444444444444444444444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=137.66 Aligned_cols=118 Identities=11% Similarity=0.075 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy9209 95 AVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR 174 (349)
Q Consensus 95 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 174 (349)
+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|.++.+|.++|.++...|++++|+..|++++.++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccH
Q psy9209 175 PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG 212 (349)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 212 (349)
|+++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999988654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=146.19 Aligned_cols=207 Identities=10% Similarity=0.022 Sum_probs=180.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhcCCCCh-------
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL-------GQTYEILRLPYYGLYYYKQAHMVRPNDP------- 178 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~------- 178 (349)
++..|.-+ ..+++..|...|.++++++|...++|.++ +.++...++..+++..+.+.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34445555 58999999999999999999999999999 8999999999999999999999877643
Q ss_pred --------------HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 179 --------------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 179 --------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.+...++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+..|+++....+.
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence 3445588999999999999999999999999888 9999999999999999999999988775422
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc--CC-hHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 245 FAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE--ET-AEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
. ....+++.+|.++..+|++++|+.+|++++... |. ..+++..+|.++..+|+.++|...|++++..+|+
T Consensus 168 ~-------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 168 F-------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred c-------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 0 025689999999999999999999999998654 55 7789999999999999999999999999999999
Q ss_pred CCCccccC
Q psy9209 322 PPSTRSSK 329 (349)
Q Consensus 322 ~~~~~~~~ 329 (349)
..+...+
T Consensus 241 -~~~~~aL 247 (282)
T 4f3v_A 241 -PKVAAAL 247 (282)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 6554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-21 Score=138.89 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
+-..++++++++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++...|++++|+.+|++++.++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 34557778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
|+++.+++++|.++..+|++++|+..|++++.+.|+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999987
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-22 Score=164.80 Aligned_cols=270 Identities=12% Similarity=0.019 Sum_probs=129.6
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 84 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 84 (349)
+..+.|+.++|.+.+++.- .| .+|..+|.++...|++++|++.|.++ +++..+ ..++.
T Consensus 12 ll~~~~~ld~A~~fae~~~--------~~------~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y---~~V~~ 69 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCN--------EP------AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSY---MEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCC--------Ch------HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHH---HHHHH
Confidence 3456788888988886641 12 47999999999999999999999874 233343 33444
Q ss_pred hcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHH
Q psy9209 85 KRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGL 164 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 164 (349)
.+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++. | +..+|..+|..+...|+|++|.
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ----------------------------------------CHHHHTTTTTC-----C-----------------CTTTHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHH
Confidence 555679999999999999886444 77788999999999999999988853 4 4469999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 165 YYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.+|.++ ..|..+|.++.++|++++|++.++++ .++.+|...+.++...|+++.|..+... +...|
T Consensus 143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a- 207 (449)
T 1b89_A 143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA- 207 (449)
T ss_dssp HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH-
T ss_pred HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH-
Confidence 999977 47889999999999999999999999 3789999999999999999999776664 22333
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH--cCCCCCchhHHHHhhhcCC--
Q psy9209 245 FAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK--RQPDESSSQPMECAVVLDP-- 320 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p-- 320 (349)
+-...++.+|.+.|++++|+.++++++.+++....++..++.++.+ .++..+.++.|...+.+.|
T Consensus 208 -----------d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~ 276 (449)
T 1b89_A 208 -----------DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 276 (449)
T ss_dssp -----------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH
T ss_pred -----------hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH
Confidence 3355688999999999999999999999999999999999888874 3455566777777777766
Q ss_pred ---CCCCccccC
Q psy9209 321 ---VPPSTRSSK 329 (349)
Q Consensus 321 ---~~~~~~~~~ 329 (349)
++...|..+
T Consensus 277 ~~~~~~~~w~e~ 288 (449)
T 1b89_A 277 RAAEQAHLWAEL 288 (449)
T ss_dssp HHHHTTTCHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=137.83 Aligned_cols=187 Identities=12% Similarity=-0.002 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC----CHHHHHHHHH
Q psy9209 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR----LPYYGLYYYK 168 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 168 (349)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577888888875 67899999999999999999999999999875 578899999999998 7 8999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHH----hhCHHHHHHHHHHHHcccc--ccHHHHHHHHHHHHh----cCcHHHHHHHHHHH
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAIGD--ADGKALFKLAKLYDK----LNETEAAADLFMEF 238 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 238 (349)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9965 5788999999999987 8899999999999999988 458999999999998 88999999999999
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKA-N-----NLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
+.. +. .+.+++.||.+|... | ++++|+.+|+++.+.. ++.+...++.+
T Consensus 156 ~~~-~~---------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 156 SSL-SR---------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp HHT-SC---------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred HHc-CC---------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 987 44 467899999999864 3 8999999999999874 34445555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-22 Score=165.03 Aligned_cols=152 Identities=16% Similarity=0.039 Sum_probs=97.1
Q ss_pred cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---------------PRMLTALGEA 187 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~ 187 (349)
++++++|+..++++++..|....++..+|.++...|++++|+..|++++.+.|.+ ..++.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556566666666666666666666666666666666655 3666666666
Q ss_pred HHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 188 FEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
+..+|++++|+.+|+++++++|.++.+++.+|.++..+|++++|+..|++++.+.|. ...++..++.++..
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---------NKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---------CHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666 56666666666666
Q ss_pred hCCHHHH-HHHHHHHHc
Q psy9209 268 ANNLDTA-YKCAQKCLQ 283 (349)
Q Consensus 268 ~g~~~~A-~~~~~~a~~ 283 (349)
.|++++| ...|++++.
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6666666 344555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-22 Score=164.01 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=164.2
Q ss_pred HhcCCHHHHHHHHHH----HhhhhhchHHHHHHHHHHHHhc------------CCCcchHHHHHHHHHHHhhCcccHHHH
Q psy9209 50 LKANNLDTAYKCAQK----CLQHEETAEEAKSLLRSIAQKR------------QPDESSSQAVLYFQRALKLNPNYLGVW 113 (349)
Q Consensus 50 ~~~~~~~~A~~~~~~----~l~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~A~~~~~~~~~~~~~~~~~~ 113 (349)
...+.+++|+..++. ++.+.|+. + ++..+... ...+++++|+..+++++...|..+.++
T Consensus 76 ~~~~~~e~al~~~~~Ge~~~l~i~p~~--a---yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 76 DLPYGLERAIQRMEKGEHSIVYLKPSY--A---FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp TCCHHHHHHHTTCCTTCEEEEEECTTT--T---TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCeEEEEECCcc--c---cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 334568888888888 77887775 2 22222211 134678889999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLD---------------YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP 178 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (349)
..+|.++...|++++|+..|++++++.|.+ ..++.++|.++...|++++|+.+|+++++++|+++
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA-ADLFMEFVSK 241 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 241 (349)
.+++.+|.++..+|++++|+..|+++++++|.+..++..++.++..+|++++| ...|++++..
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 5577777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-19 Score=161.69 Aligned_cols=240 Identities=12% Similarity=0.040 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+|+.+|.++...|++++|+..|.++ +++.. +..++.++.+.|++++|+++|..+.+..++ +.+...+|.+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~sa---y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSS---YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence 68999999999999999999999886 44444 344566677789999999999999887744 2223346677
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
|.+.+++++ ++.|. ..+ +...+..+|..+...|++++|..+|.++ ..|..+|.++.++|++++|++
T Consensus 1177 YAKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 777766663 33331 122 3344556777777777777777777664 356667777777777777777
Q ss_pred HHHHHHcccc-------------------------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcch
Q psy9209 200 CYNKSRAIGD-------------------------ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCG 254 (349)
Q Consensus 200 ~~~~a~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
.++++....+ .+++.+..++..|...|.+++|+..+++++.+++. +
T Consensus 1243 aarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera---------H 1313 (1630)
T 1xi4_A 1243 GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA---------H 1313 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh---------H
Confidence 7766633221 12344456666777777777777777777777766 6
Q ss_pred HHHHHHHHHHHHHh--CCHHHHHHHHHHHHcccC-----ChHHHHHHHHHHHHHcCCCCCchhH
Q psy9209 255 FFAFKYLANHHLKA--NNLDTAYKCAQKCLQHEE-----TAEEAKSLLRSIAQKRQPDESSSQP 311 (349)
Q Consensus 255 ~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~ 311 (349)
...+..+|.++.+- ++..++++.|...+.+.| .....|..+..+|.+.|+++.|+..
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 67776666666553 466677777777666665 5667777777777777777777643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=149.50 Aligned_cols=200 Identities=12% Similarity=0.035 Sum_probs=160.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
|..+..+..+|..+...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 187 AFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 187 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
++...|++++|+..|+++++++|+++..+......... ..++...........+. ...+...++.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~i~~~l~~l~- 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQ---------ESELHSYLTRLI- 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCC---------CCHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhh---------hHHHHHHHHHHH-
Confidence 99999999999999999999988764322222222221 12222222233333444 456666666654
Q ss_pred HhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHc-CCCCCchhHHHHhhhcCC
Q psy9209 267 KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-QPDESSSQPMECAVVLDP 320 (349)
Q Consensus 267 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p 320 (349)
.|++++|++.++++++.+|++......++.++... +.+++|...|.++.+..+
T Consensus 148 -~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 148 -AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp -HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred -HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 68999999999999999999988888888777766 667889999998876433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-21 Score=159.62 Aligned_cols=264 Identities=13% Similarity=0.042 Sum_probs=151.7
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|+.+.+.|++++|++.|.++ .++ ..+..++..+...|++++|+.+++.+.+..++ +.. ...
T Consensus 38 La~A~l~~g~~~eAIdsfika--------~D~------~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i---~~~ 99 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIKA--------DDP------SSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYV---ETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcC--------CCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chh---HHH
Confidence 578889999999999999653 122 35888999999999999999999998875433 333 344
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
++.+|.+.|++.++.++++. |+ ..+|..+|..+...|+|++|+.+|.++ ..|..+|.++.++|+++
T Consensus 100 Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp ---------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHH
Confidence 55668888999998887752 43 469999999999999999999999977 46889999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
+|++.+.++ +++.+|...+.++...|+++.|..+... +...|+. ...++.+|.+.|++++|+..+++++.+
T Consensus 166 ~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 166 AAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 999999999 4789999999999999999999887775 3355544 446888999999999999999999999
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHh--CCHHHHHHHHHHHHcccC-----ChHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKA--NNLDTAYKCAQKCLQHEE-----TAEEAKSLLRSIAQKRQPDESSSQPMEC 314 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 314 (349)
++. ....+..+|.+|.+- ++..+.++.|.+.+.+.| .....|..+..+|...++++.|+..+-.
T Consensus 237 e~a---------h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 237 ERA---------HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp TTC---------CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHH---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 887 799999999888764 577788888887777877 7788899999999999999988776544
Q ss_pred h
Q psy9209 315 A 315 (349)
Q Consensus 315 a 315 (349)
.
T Consensus 308 h 308 (449)
T 1b89_A 308 H 308 (449)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=134.30 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=105.4
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 96 VLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34677888888988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHH
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKAL 215 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 215 (349)
+++.+++.+|.++...|++++|+..|++++++.|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999998887765543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=129.00 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=102.6
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
++.+++.+|.++...|++++|+.+|+++++.+|.++........+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 888888888888888888888888888888888776554444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=134.65 Aligned_cols=179 Identities=14% Similarity=0.051 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh----CHHHHHHHHH
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE----KISEAMKCYN 202 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 202 (349)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678899999875 68999999999999999999999999999875 689999999999998 7 8999999999
Q ss_pred HHHccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH----hCCHHHH
Q psy9209 203 KSRAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK----ANNLDTA 274 (349)
Q Consensus 203 ~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 274 (349)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++....+. ...+.+++.||.+|.. .+++++|
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-------~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES-------DAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-------HHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-------cchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9965 5689999999999998 89999999999999998762 0148999999999999 8899999
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHHHHc-C-----CCCCchhHHHHhhhcCC
Q psy9209 275 YKCAQKCLQHEETAEEAKSLLRSIAQKR-Q-----PDESSSQPMECAVVLDP 320 (349)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~a~~~~p 320 (349)
+.+|+++.+. |.++.+...+|.++... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66777899999999754 3 78999999999988754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-19 Score=127.12 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 129 AIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 129 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
+...|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
|+++.+++.+|.++...|++++|+..|++++...|.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999887
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=153.02 Aligned_cols=202 Identities=10% Similarity=0.056 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC--C
Q psy9209 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN----------TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR--L 159 (349)
Q Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~ 159 (349)
.++|+..+.+++..+|++..+|+..+.++...|+ +++++..++++++.+|++..+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3455666666666666666666666666666555 566666666666666666666666666666666 4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh-CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE-KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEF 238 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 238 (349)
+++++..++++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|..++.++...+...++
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~------- 197 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS------- 197 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS-------
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc-------
Confidence 466666666666666666666666666655555 555555555555555555555555555555443322000
Q ss_pred HhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCC-----------
Q psy9209 239 VSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDES----------- 307 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~----------- 307 (349)
.. .. -...+.+++|++++.+++..+|++..+|..++.++...+.+++
T Consensus 198 ----~~---------~~---------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~ 255 (567)
T 1dce_A 198 ----GP---------QG---------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEA 255 (567)
T ss_dssp ----SS---------CC---------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTT
T ss_pred ----cc---------cc---------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCc
Confidence 00 00 0002468999999999999999999999999999999998877
Q ss_pred -chhHHHHhhhcCCCC
Q psy9209 308 -SSQPMECAVVLDPVP 322 (349)
Q Consensus 308 -A~~~~~~a~~~~p~~ 322 (349)
|+.+|.+++.++|..
T Consensus 256 ~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 256 CLSVCFSRPLTVGSRM 271 (567)
T ss_dssp EEEEEEEEEECTTBTT
T ss_pred eEEEEeccceeccccc
Confidence 777899999988875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=134.79 Aligned_cols=177 Identities=6% Similarity=-0.119 Sum_probs=148.7
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY------RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND-- 177 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 177 (349)
+|.....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556677888899999999999999999998766543 446678899999999999999999999875543
Q ss_pred ----hHHHHHHHHHHHHhhCHHHHHHHHHHHHcc---cccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC
Q psy9209 178 ----PRMLTALGEAFEKQEKISEAMKCYNKSRAI---GDAD----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA 246 (349)
Q Consensus 178 ----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 246 (349)
..++..+|.+|...|++++|+.+|+++++. .|++ ..++.++|.++..+|++++|+.++++++.+.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-- 228 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-- 228 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--
Confidence 468899999999999999999999999944 4442 268999999999999999999999999998765
Q ss_pred CCCCCcchHHHHHHHHHHHHHhCCHHHH-HHHHHHHHccc
Q psy9209 247 APPDKTCGFFAFKYLANHHLKANNLDTA-YKCAQKCLQHE 285 (349)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~ 285 (349)
.........++..+|.++...|++++| ..++++++.+.
T Consensus 229 -~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 229 -INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp -TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 333444588999999999999999999 88899998763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-18 Score=120.39 Aligned_cols=134 Identities=25% Similarity=0.440 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46778899999999999999999999998888888899999999999999999999999999999888899999999999
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.|++++|+..+++++...|.++.++..+|.++...|++++|...+++++...|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999998888889999999999999999999999999887764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=118.95 Aligned_cols=134 Identities=25% Similarity=0.360 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 225 LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.|++++|+..+++++...|. ...++..+|.++...|++++|..++++++..+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR---------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888888776 5778888888888888888888888888877764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-19 Score=142.04 Aligned_cols=188 Identities=13% Similarity=0.043 Sum_probs=118.8
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (349)
+..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++..+++.+|.++...|++++
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444456777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
|+..|+++++++|+++..+........ +..++..+........|.++.+...++.+. .|++++|++.++++++..
T Consensus 91 A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~ 165 (281)
T 2c2l_A 91 AIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGH 165 (281)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTT
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccc
Confidence 777777777776655322211111111 112222222233344555666666665544 577777777777777777
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHh-CCHHHHHHHHHHHHcc
Q psy9209 243 DTFAAPPDKTCGFFAFKYLANHHLKA-NNLDTAYKCAQKCLQH 284 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 284 (349)
|. .......++.++... +.+++|...|.++.+.
T Consensus 166 p~---------~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 166 ED---------DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SC---------HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred cc---------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 76 556666666666655 5677777777777653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=124.91 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=108.2
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc
Q psy9209 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 210 (349)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
++.+++.+|.++...|++++|+..|++++...|.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999987
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=153.63 Aligned_cols=210 Identities=12% Similarity=0.079 Sum_probs=177.4
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcc----------hHHHHHHHHHHHhhCcccHHHHH
Q psy9209 46 ANHHLKANNL-DTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDES----------SSQAVLYFQRALKLNPNYLGVWT 114 (349)
Q Consensus 46 ~~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~ 114 (349)
.......|++ ++|+..+.+++..+|++..+|...+.+.... |+ +++++..++++++.+|++..+|.
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l---~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~ 111 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHL---ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhc---ccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3344455654 6789999999999999999998887776654 55 99999999999999999999999
Q ss_pred HHHHHHHhcC--ChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 115 LLGHEYMEMK--NTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR-LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 115 ~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
..+.++...| ++++++..+.++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|...+.++...
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999999999 6799999999999999999999999999999999 999999999999999999999999999999876
Q ss_pred hCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
+...++ .+.. -...+.++++++++.+++..+|. +..+|+.++.++...+++
T Consensus 192 ~~~~~~----------~~~~----------~~~~~~~~eel~~~~~ai~~~P~---------~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 192 HPQPDS----------GPQG----------RLPENVLLKELELVQNAFFTDPN---------DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCCCS----------SSCC----------SSCHHHHHHHHHHHHHHHHHCSS---------CSHHHHHHHHHHSCCCCC
T ss_pred cccccc----------cccc----------cccHHHHHHHHHHHHHHHhhCCC---------CccHHHHHHHHHhcCCCc
Confidence 543111 0000 01135689999999999999999 799999999999999886
Q ss_pred HH------------HHHHHHHHHcccCC
Q psy9209 272 DT------------AYKCAQKCLQHEET 287 (349)
Q Consensus 272 ~~------------A~~~~~~a~~~~~~ 287 (349)
++ |+..|.+++.++|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 243 DVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cceeeeeeccCCceEEEEeccceecccc
Confidence 66 55567777776664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=117.96 Aligned_cols=118 Identities=15% Similarity=0.068 Sum_probs=105.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHccc------cccHHHHHHHHHHHHh
Q psy9209 187 AFEKQEKISEAMKCYNKSRAIG------DADGKALFKLAKLYDK 224 (349)
Q Consensus 187 ~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~ 224 (349)
++...|++++|+..|+++++++ |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999998 8888888887776544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-17 Score=133.46 Aligned_cols=169 Identities=7% Similarity=-0.105 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HH
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR------AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RM 180 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~ 180 (349)
+...+..+...|++++|+..++++++..+..+. .+..+|.++...|++++|+.++++++...+... .+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 345577888999999999999999987665443 344588888889999999999999998654432 37
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHcc-------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAI-------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
+..+|.+|...|++++|+.+|+++++. .+....+++++|.++..+|++++|+.++++++.+.+. ......
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~---~~~~~~ 234 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMAL 234 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---cCcHHH
Confidence 899999999999999999999999943 3445668999999999999999999999999998876 334444
Q ss_pred hHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcc
Q psy9209 254 GFFAFKYLANHHLKANN-LDTAYKCAQKCLQH 284 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~ 284 (349)
.+.++..+|.++..+|+ +++|+.++++++.+
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 68999999999999994 79999999999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-16 Score=125.04 Aligned_cols=250 Identities=12% Similarity=0.009 Sum_probs=175.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC
Q psy9209 46 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN 125 (349)
Q Consensus 46 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 125 (349)
.+-.+-.|+|..++....+. .|.+..... .-..+++...|++... .. .+....+...++..+ . +.
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~--~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~-~-~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLL--FYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFL-D-TK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHH--HHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHH-T-TT
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHH--HHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHh-c-cc
Confidence 34566789999988854433 333322211 1112222223444421 11 111222444444443 2 22
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP--NDPRMLTALGEAFEKQEKISEAMKCYNK 203 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 203 (349)
|+..+++.++..+....++..+|.++...|++++|+.++.+.+..+| .+.+++...+.++..+|+.+.|.+.+++
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888888877655666678999999999999999999999988886 7788999999999999999999999999
Q ss_pred HHccccc----cHHHHHHH--HHHHHhcC--cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHH
Q psy9209 204 SRAIGDA----DGKALFKL--AKLYDKLN--ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAY 275 (349)
Q Consensus 204 a~~~~~~----~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (349)
+.+.+|+ +..+...+ +.+....| ++.+|...|+++....|+ .......+. ++..+|++++|.
T Consensus 162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~---------~~~~~lLln-~~~~~g~~~eAe 231 (310)
T 3mv2_B 162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT---------WKTQLGLLN-LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS---------HHHHHHHHH-HHHHHTCHHHHH
T ss_pred HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC---------cccHHHHHH-HHHHcCCHHHHH
Confidence 9888883 23333444 44455556 899999999998877664 222222233 899999999999
Q ss_pred HHHHHHHcc----------cCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCc
Q psy9209 276 KCAQKCLQH----------EETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPST 325 (349)
Q Consensus 276 ~~~~~a~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 325 (349)
..++.+++. +|+++++..++..+...+|+ +|.++++++.+.+|+++-+
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 999987776 48899999888888888886 8899999999999998754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-18 Score=127.16 Aligned_cols=130 Identities=16% Similarity=0.225 Sum_probs=112.6
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHH-HHHhCCH--HH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT-YEILRLP--YY 162 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 162 (349)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44568889999999999999999999999999999999999999999999999999999999999999 7788998 99
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHH
Q psy9209 163 GLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKAL 215 (349)
Q Consensus 163 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 215 (349)
|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.+....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999988765443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-17 Score=131.17 Aligned_cols=177 Identities=8% Similarity=-0.073 Sum_probs=147.4
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc--
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP------RMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-- 211 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 211 (349)
+|.....+...+..+...|++++|+..+.++++..+... ..+..+|.++...|++++|+.++++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 345566677888999999999999999999999887654 345678889999999999999999999864432
Q ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 212 ----GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC-GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 212 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
..++..+|.+|...|++++|+.+|++++..... ....+. ...++.++|.+|..+|++++|+.++++++++.+
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~---~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA---LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999965433 111111 237999999999999999999999999998754
Q ss_pred C------hHHHHHHHHHHHHHcCCCCCc-hhHHHHhhhcC
Q psy9209 287 T------AEEAKSLLRSIAQKRQPDESS-SQPMECAVVLD 319 (349)
Q Consensus 287 ~------~~~~~~~l~~~~~~~~~~~~A-~~~~~~a~~~~ 319 (349)
. ...++..+|.++..+|++++| ..++++++.+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3 378899999999999999999 88899988654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=132.53 Aligned_cols=127 Identities=16% Similarity=0.033 Sum_probs=51.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh----------------HHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP----------------RML 181 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~ 181 (349)
......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++ .++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3333444444444444433333333444444444444444444444444444444444443 334
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..+|.++...|++++|+.++++++..+|.++.+++.+|.++..+|++++|+..|++++.+.|.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 444444444444444444444444444444444444444444444444444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=127.63 Aligned_cols=256 Identities=9% Similarity=-0.046 Sum_probs=190.8
Q ss_pred hHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy9209 5 LYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 84 (349)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 84 (349)
-.+-.|+|..++... ..+.+ .... .....+.++++..|++... ..-.|. ..+ +..++.
T Consensus 22 n~fy~G~yq~~i~e~----~~~~~-----~~~~--~~~~~~~Rs~iAlg~~~~~-------~~~~~~-~~a---~~~la~ 79 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI----EKFSK-----VTDN--TLLFYKAKTLLALGQYQSQ-------DPTSKL-GKV---LDLYVQ 79 (310)
T ss_dssp HHHTTTCHHHHTHHH----HTSSC-----CCCH--HHHHHHHHHHHHTTCCCCC-------CSSSTT-HHH---HHHHHH
T ss_pred HHHHhhHHHHHHHHH----HhcCc-----cchH--HHHHHHHHHHHHcCCCccC-------CCCCHH-HHH---HHHHHH
Confidence 345689999998733 23222 1111 3556677888888887742 122221 122 233333
Q ss_pred hcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhCCHHH
Q psy9209 85 KRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN--LDYRAWYGLGQTYEILRLPYY 162 (349)
Q Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~ 162 (349)
.+. ++ |+..+++.+...+....++..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.
T Consensus 80 ~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp HHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred Hhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 332 22 88999998887666677778999999999999999999999999886 889999999999999999999
Q ss_pred HHHHHHHHHhcCCC----ChHHHHHH--HHHHHHhh--CHHHHHHHHHHHHccccc--cHHHHHHHHHHHHhcCcHHHHH
Q psy9209 163 GLYYYKQAHMVRPN----DPRMLTAL--GEAFEKQE--KISEAMKCYNKSRAIGDA--DGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 163 A~~~~~~~~~~~~~----~~~~~~~l--~~~~~~~~--~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
|.+.++++.+.+|+ +-.+...+ +.+....| ++.+|...|+++....|+ .+..+++ ++..+|++++|.
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe 231 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHH
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHH
Confidence 99999999999883 22333444 55566667 999999999999988886 3334444 899999999999
Q ss_pred HHHHHHHhcccccCCCCC----CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 233 DLFMEFVSKLDTFAAPPD----KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
..++.+++..|. ... .+.++.++.+++.+....|+ +|.++++++.+..|+++.+....
T Consensus 232 ~~L~~l~~~~p~---~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 232 GIVELLLSDYYS---VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHHHHSHHHH---TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhccc---ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 999988877532 100 12389999999999999998 89999999999999998765443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-17 Score=125.11 Aligned_cols=143 Identities=14% Similarity=0.065 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
..++.+|.++...|++++|+..|++++ .| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 345666777777777777777777664 22 566777777777777777777777777777777777777777777777
Q ss_pred cCcHHHHHHHHHHHHhcccccC-------CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 225 LNETEAAADLFMEFVSKLDTFA-------APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
.|++++|+..|++++...|... .....+....+++.+|.++...|++++|+.+++++++..|+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 7777777777777777665510 00023346799999999999999999999999999999997643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=120.60 Aligned_cols=135 Identities=19% Similarity=0.082 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.++++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56778888899999999999999999999888888889999999999999999999999999999988889999999999
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHH--HHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKL--AKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..|++++|+.++++++..+|.+..++..+ +..+...|++++|+..+.+.....+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 99999999999999999888888877444 44477888999999888887765443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=115.95 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAF 258 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.++|. ...++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~ 75 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---------FVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------cHHHH
Confidence 344444555555555555555555555555555555555555555555555555555555555444 44455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHccc------CChHHHHHHHHHHH
Q psy9209 259 KYLANHHLKANNLDTAYKCAQKCLQHE------ETAEEAKSLLRSIA 299 (349)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~ 299 (349)
+.+|.++...|++++|+..|+++++++ |++..++..++.+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 555555555555555555555555554 45555554444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=125.63 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
..++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 456777888888888888888888875 33 567888888888888888888888888888888888888888888888
Q ss_pred hhCHHHHHHHHHHHHccccccH----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 191 QEKISEAMKCYNKSRAIGDADG----------------KALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..+++++...|.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888888888665544 89999999999999999999999999999887
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=131.16 Aligned_cols=151 Identities=14% Similarity=0.029 Sum_probs=107.4
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH----------------HHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY----------------RAWYGLGQ 152 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~l~~ 152 (349)
.|+++++.+.+.......+.....+..+|..+...|++++|+..|+++++..|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 35666666666555555555666777777777777788888887877777776665 77888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|+++++++|.+..++..++.++...++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887777776665
Q ss_pred -HHHHHHH
Q psy9209 233 -DLFMEFV 239 (349)
Q Consensus 233 -~~~~~~~ 239 (349)
..+.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 3344333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-17 Score=115.51 Aligned_cols=122 Identities=18% Similarity=0.162 Sum_probs=109.4
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
.|....++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45667888999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE 227 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 227 (349)
.++...|++++|+.++++++..+|.+..++..++.++..+|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999888999999988887664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=124.07 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=74.4
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHhhCH--HHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA-FEKQEKI--SEA 197 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~A 197 (349)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455666666666666666666666666666666666666666666666666666666666666666 5556665 666
Q ss_pred HHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 198 MKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+..+++++..+|.++.++..+|.++...|++++|+..|++++...|.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 66666666666666666666666666666666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=115.26 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=100.8
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
+|..+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNET 228 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 228 (349)
.++...|++++|+.++++++...|.++.++..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888777764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-17 Score=120.22 Aligned_cols=116 Identities=18% Similarity=0.089 Sum_probs=104.9
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
.+..+..+..+|.++...|++++|+..|+++++++|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
.++..+|++++|+.+|+++++++|++...+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999988876666544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=129.62 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=123.9
Q ss_pred HHhcCCCcchHHHHHHHHHHHhhCcccHH------HHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHH
Q psy9209 83 AQKRQPDESSSQAVLYFQRALKLNPNYLG------VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGL 150 (349)
Q Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l 150 (349)
...+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+.. ..++.++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33444468888888888888887665443 23457888888888888888888888854322 3468888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc------HHHHHH
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMV-------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD------GKALFK 217 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~ 217 (349)
|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+.++++++++.+.. +.++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888888888888888888842 12233578889999999999999999999988875443 778889
Q ss_pred HHHHHHhcCc-HHHHHHHHHHHHhcccc
Q psy9209 218 LAKLYDKLNE-TEAAADLFMEFVSKLDT 244 (349)
Q Consensus 218 l~~~~~~~~~-~~~A~~~~~~~~~~~~~ 244 (349)
+|.++..+|+ +++|+..|++++.+...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 9999999994 68999999999887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=146.72 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---------------HHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---------------YRAWYGLGQT 153 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~ 153 (349)
.+++++|+..+++++...|.....+..+|.++...|++++|+..|++++++.|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888889999999999999999999999999999999998887 6899999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHH
Q psy9209 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAAD 233 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 233 (349)
+..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..++++++|..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -HHHHHHh
Q psy9209 234 -LFMEFVS 240 (349)
Q Consensus 234 -~~~~~~~ 240 (349)
.+.+++.
T Consensus 407 ~~~~~~f~ 414 (457)
T 1kt0_A 407 RIYANMFK 414 (457)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 4444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=135.79 Aligned_cols=223 Identities=9% Similarity=-0.027 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHH-HHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAI-QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
......|++++...|..+..|+..+..+...|+.++|. ..|++++...|.+...|..++......|+++.|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hc-----------CCC-----------ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHhcCc-
Q psy9209 172 MV-----------RPN-----------DPRMLTALGEAFEKQEKISEAMKCYNKSRAI-GDADGKALFKLAKLYDKLNE- 227 (349)
Q Consensus 172 ~~-----------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~- 227 (349)
.. .|. ...+|...+.+..+.|..+.|...|.++++. .+....++...+.+....++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 75 243 3457888999999999999999999999988 55557788878877777654
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC---ChHHHHHHHHHHHHHcCC
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE---TAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~ 304 (349)
++.|..+|+.+++..|. .+..|...+......|+.+.|...|++++...| .....|..........|+
T Consensus 486 ~e~Ar~ife~~Lk~~p~---------~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 486 TKTACKVLELGLKYFAT---------DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp CHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCC---------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999998 788888999999999999999999999999887 467888888999999999
Q ss_pred CCCchhHHHHhhhcCCCCCC
Q psy9209 305 DESSSQPMECAVVLDPVPPS 324 (349)
Q Consensus 305 ~~~A~~~~~~a~~~~p~~~~ 324 (349)
.+.+....+++.+..|+++.
T Consensus 557 ~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp SHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHhCCCCcH
Confidence 99999999999999999765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=117.67 Aligned_cols=133 Identities=14% Similarity=0.022 Sum_probs=121.9
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 223 DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAF--KYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 223 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
...|++++|+..+++++...|. ...++ ..++..+...|++++|+..+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH---------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999988 56666 44555588889999999998887543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=122.05 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc---cc----c
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMV------RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI---GD----A 210 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~----~ 210 (349)
..++..+|.++...|++++|+.++++++.+ .|....++..+|.++...|++++|+.++++++.. .+ .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 333444444444444444444444444431 1222334445555555555555555555555544 11 2
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
...++..+|.++...|++++|+..+++++...+. .........++..+|.++...|++++|..++++++++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ---ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2345556666666666666666666666655433 1122223445566777777777777777777777655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-17 Score=123.54 Aligned_cols=157 Identities=14% Similarity=0.062 Sum_probs=128.2
Q ss_pred CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhCCHH
Q psy9209 88 PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI------NNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
..|++++|.+.++......+....++..+|.++...|++++|+..+++++++ .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3588888888665555433366788999999999999999999999999983 4556788999999999999999
Q ss_pred HHHHHHHHHHhc---CCCC----hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcH
Q psy9209 162 YGLYYYKQAHMV---RPND----PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNET 228 (349)
Q Consensus 162 ~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~ 228 (349)
+|+.++++++.+ .+++ ..++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999987 4433 356889999999999999999999999876322 234568899999999999
Q ss_pred HHHHHHHHHHHhcccc
Q psy9209 229 EAAADLFMEFVSKLDT 244 (349)
Q Consensus 229 ~~A~~~~~~~~~~~~~ 244 (349)
++|...+++++.+...
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=111.93 Aligned_cols=115 Identities=17% Similarity=0.084 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA 257 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
+.++..+|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..+++++.+.|.. .........+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET--RADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc--chhhHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999888862 1222334678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHH
Q psy9209 258 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295 (349)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 295 (349)
+..+|.++..+|++++|+.+|++++...|+. +....+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~-~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP-ELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH-HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH-HHHHHH
Confidence 9999999999999999999999999988864 333333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=112.84 Aligned_cols=122 Identities=12% Similarity=0.009 Sum_probs=116.7
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
.|.....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++.+|.++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
.++...|++++|+..+++++...|. ...++..++.++..+|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS---------CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG---------GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998 78999999999988774
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=111.96 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-------HHHHHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-------GKALFK 217 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~ 217 (349)
.++..+|..+...|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+ ..++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3344444444444455555555555444445444444555555555555555555555554444432 234555
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 218 LAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 218 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+|.++..+|++++|+..|++++...|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 555666666666666666666555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=112.07 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=118.5
Q ss_pred hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH
Q psy9209 139 INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218 (349)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 218 (349)
.+|.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCH
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNL 271 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (349)
|.++...|++++|+..+++++...|. ...++..+|.++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPD---------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCcc---------chHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998 789999999999998875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=112.55 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=106.0
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
.+|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++.++|+++.++..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccc-----cHHHHHHHHHHHHhc
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDA-----DGKALFKLAKLYDKL 225 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~ 225 (349)
|.++...|++++|+..|++++...|+ +..+...+..+....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 566666666655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=116.76 Aligned_cols=116 Identities=12% Similarity=0.053 Sum_probs=107.6
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
.+.+...+..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|+++++++|.++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
.++..+|++++|+..|++++.+.|+ ....+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGN---------GGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSS---------SCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC---------chHHHHHHHHH
Confidence 9999999999999999999999998 55555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=110.20 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46788888888999999999999999999988889999999999999999999999999999998888888999999999
Q ss_pred hCHHHHHHHHHHHHccccccH
Q psy9209 192 EKISEAMKCYNKSRAIGDADG 212 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~~~~~ 212 (349)
|++++|+..++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999888888654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=144.20 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=135.6
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---------------PRMLTALGE 186 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~ 186 (349)
.++++++|+..|+++++..|.....+..+|.++...|++++|+..|++++++.|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHH
Q psy9209 187 AFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 187 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++.++|. +..++..++.++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~---------~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ---------NKAARLQISMCQK 396 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------CHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HhCCHHHHHHH
Q psy9209 267 KANNLDTAYKC 277 (349)
Q Consensus 267 ~~g~~~~A~~~ 277 (349)
..|++++|...
T Consensus 397 ~~~~~~~a~~~ 407 (457)
T 1kt0_A 397 KAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-16 Score=108.26 Aligned_cols=121 Identities=27% Similarity=0.472 Sum_probs=102.7
Q ss_pred Cccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 106 NPNY-LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 106 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
+|.. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3443 677888888888899999999999999888888888888889998889999999999999888888888888889
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 226 (349)
|.++...|++++|+.++++++..+|.++.++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999998888888888888888876654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-17 Score=115.29 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-------cH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-------DY-----RAWYGLGQTYEILRLPYYGLYYYKQAHMV---- 173 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 173 (349)
...+...|..+...|+|++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345677777788888888888888888887777 22 26666666666666666666666666665
Q ss_pred ---CCCChHHH----HHHHHHHHHhhCHHHHHHHHHHHHccccccH
Q psy9209 174 ---RPNDPRML----TALGEAFEKQEKISEAMKCYNKSRAIGDADG 212 (349)
Q Consensus 174 ---~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 212 (349)
+|+++.+| +++|.++..+|++++|+..|++++++.|.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 55555555 5555555555555555555555555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-16 Score=115.33 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=103.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI------------------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
....+...|..+...|++++|+..|++++.. +|....++.++|.++...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567788889999999999999999999888 6777889999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccH-HHHHHHHHHHHhcCc
Q psy9209 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG-KALFKLAKLYDKLNE 227 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~ 227 (349)
+.++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+....++
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 667777766655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-15 Score=105.23 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=101.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678888999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
...|++++|+..++++++.+|.++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999998888888887764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-15 Score=105.22 Aligned_cols=121 Identities=24% Similarity=0.353 Sum_probs=112.6
Q ss_pred Cccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHH
Q psy9209 140 NNLD-YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKL 218 (349)
Q Consensus 140 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 218 (349)
+|.. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4444 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC
Q psy9209 219 AKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 219 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (349)
|.++...|++++|+..+++++...|. ...++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPN---------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998 7899999999987765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-16 Score=113.78 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc------------------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI------------------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
.+...|..++..|++++|+..|++++.. +|....++.++|.++..+|++++|+..+++++.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555555555555555555554 5666778888888888888888888888888888
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChH-HHHHHHHHHHHHcCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE-EAKSLLRSIAQKRQP 304 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~ 304 (349)
+|. .+.+++.+|.++...|++++|+..|+++++++|+++ .+...++.+....++
T Consensus 93 ~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 93 EET---------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp STT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCc---------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 887 688888888888888888888888888888888877 666677666655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=108.60 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=64.9
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHH
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 219 (349)
+|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.++...|++++|+..|++++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666666665554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-14 Score=119.65 Aligned_cols=206 Identities=9% Similarity=-0.000 Sum_probs=164.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCc--------chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK--------TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAE 73 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 73 (349)
+|+-+...|++++|++.|.++++..+........ .....++..+|.+|...|++++|++++.+++...+...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 4677889999999999999999655443221111 11124688999999999999999999999998755432
Q ss_pred ---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----
Q psy9209 74 ---EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNP------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----- 139 (349)
Q Consensus 74 ---~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----- 139 (349)
........++..+...|++++|+.++++++...+ ....++..+|.++...|++++|+..+++++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 2233455667778888999999999999987643 34678899999999999999999999999875
Q ss_pred -CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CC----hHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 140 -NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP---ND----PRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 140 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.+....++..+|.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344578899999999999999999999999987633 22 246677888899999999999999999875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-14 Score=127.03 Aligned_cols=229 Identities=12% Similarity=0.038 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHH-HHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHH
Q psy9209 56 DTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAV-LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYR 134 (349)
Q Consensus 56 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 134 (349)
+.....|++++...|..+..|..++...... |+.++|. ..|++++...|.+...|...+......|+++.|..+|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~---~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEK---NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4456789999999999999998888776554 7788897 99999999999999999999999999999999999999
Q ss_pred HHHHhC-----------c-----------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHh
Q psy9209 135 QAIEIN-----------N-----------LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 135 ~a~~~~-----------~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 191 (349)
+++... | ....+|...+....+.|..+.|...|.++++. .+....+|...+.+....
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 999752 3 23457889999999999999999999999987 445567787777777776
Q ss_pred hC-HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCC
Q psy9209 192 EK-ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN 270 (349)
Q Consensus 192 ~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (349)
++ ++.|..+|+.+++..|+++..+...+......|+.+.|..+|++++...|. ......+|......-...|+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~------~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD------SHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS------TTHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHcCC
Confidence 54 899999999999999999999999999999999999999999999998773 12267888889999999999
Q ss_pred HHHHHHHHHHHHcccCChHHHHH
Q psy9209 271 LDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
.+.+....+++.+..|+++....
T Consensus 557 ~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp SHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHH
Confidence 99999999999999998754433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-16 Score=109.60 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------ChH-----HHHHHHHHHHHhhCHHHHHHHHHHHHcc---
Q psy9209 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN-------DPR-----MLTALGEAFEKQEKISEAMKCYNKSRAI--- 207 (349)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 207 (349)
....+..+|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.++++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 443 9999999999999999999999999999
Q ss_pred ----ccccHHHH----HHHHHHHHhcCcHHHHHHHHHHHHhccccc
Q psy9209 208 ----GDADGKAL----FKLAKLYDKLNETEAAADLFMEFVSKLDTF 245 (349)
Q Consensus 208 ----~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 245 (349)
+|+++.+| +++|.++..+|++++|+..|++++++.|++
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999999984
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=108.63 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=105.9
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
..|.....+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++...|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456678888999999999999999999999999988887 88889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
..+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999888888888776543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-17 Score=140.48 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=88.9
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
.++..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++.++|.+|..+|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34455666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHH--HHHhhCHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPRMLTALGEA--FEKQEKISEAMKCYN 202 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 202 (349)
++|+..|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777777777777776 667777777777777
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-16 Score=107.19 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 226 (349)
++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cHHHHHHHHHHHHhccc
Q psy9209 227 ETEAAADLFMEFVSKLD 243 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~ 243 (349)
++++|+..+++++...|
T Consensus 100 ~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 100 NANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-15 Score=102.68 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAF 258 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|. ...++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~ 75 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---------WGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---------cHHHH
Confidence 344444555555555555555555555555544555555555555555555555555555554444 34455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHH
Q psy9209 259 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSI 298 (349)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 298 (349)
..+|.++...|++++|..+++++++..|+++.++..++.+
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555555555555555544444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=129.16 Aligned_cols=190 Identities=9% Similarity=-0.028 Sum_probs=84.1
Q ss_pred CcchHHHHHHHHHHHhhCcccH-----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYL-----------------GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YR 145 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~ 145 (349)
.|++++|++.|.++++..|... .++..+|.+|...|++++|++++.+++...+.. ..
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3555555555555555544321 134445555555555555555555554432221 12
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc------ccccHH
Q psy9209 146 AWYGLGQTYEILRLPYYGLYYYKQAHMVRP------NDPRMLTALGEAFEKQEKISEAMKCYNKSRAI------GDADGK 213 (349)
Q Consensus 146 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~ 213 (349)
+...++.++...|++++|+.++++++...+ ....++..+|.++...|++++|..++++++.. .+....
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 233344444444455555555544443311 11234444444444455555554444444433 122233
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc-hHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC-GFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
++..+|.+|...|++++|...+++++...+. ....+. ....+..+|.++...|++++|..+|.++
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANS---IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444444444444444444444444443 222111 1233444444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-15 Score=106.67 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=90.7
Q ss_pred CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 174 RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD---GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
.|.+...+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++...|.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 45566777777777777777777777777777777766 677777888888888888888888888877776
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
...+++.+|.++...|++++|+.+|+++++.+|++..++..++.+..
T Consensus 98 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 ---DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 67777888888888888888888888888888877777777776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=104.59 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHHHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY---RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND---PRMLTALG 185 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~ 185 (349)
+++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 456778888888888888888888888888776 688888888888888888888888888888887 67788888
Q ss_pred HHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 186 EAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
.++...|++++|+..|++++...|+++.+......+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 888888888888888888888888777666555554433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=129.52 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY-----------------RAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
..+..+|..+...|++++|+..|++++...|.+. .++.++|.++..+|++++|+.++++++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444433 37888888888888999999999988888
Q ss_pred CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhcccc
Q psy9209 174 RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL-YDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
+|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+ ....+..+++...|.+++...|.
T Consensus 260 ~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 888888888899998888999999999999888888888888888887 44556677788888888888776
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=105.55 Aligned_cols=116 Identities=20% Similarity=0.149 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------hHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND-------PRML 181 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~ 181 (349)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|.+ +.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456677777777777777778777777777777777777777777777777777777777777776665 6777
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
..+|.++...|++++|+.+|++++...| ++.....++.+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7778888888888888888888777777 566666666665443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=133.24 Aligned_cols=126 Identities=15% Similarity=0.090 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
++..+|..+...|++++|+..|+++++.+|++..++..++ .++...|++++|+..++++++++|+++.++..+|.++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4667888888899999999999999999988877755444 4455678999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHH--HHHhCCHHHHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT--YEILRLPYYGLYYYKQ 169 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 169 (349)
..+|++++|+..|+++++++|++..++..++.+ +...|++++|+..+++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999888888888887 7888899999988883
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=104.30 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=66.6
Q ss_pred CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHH
Q psy9209 106 NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN--DPRMLTA 183 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 183 (349)
+|+++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45555566666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHHh-hCHHHHHHHHHHHHccccc
Q psy9209 184 LGEAFEKQ-EKISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 184 l~~~~~~~-~~~~~A~~~~~~a~~~~~~ 210 (349)
+|.++... |++++|+.++++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 66666666 6666666666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=106.99 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
+.+++|++.++++++++|+++++|.++|.++...++++.+.... +.+++|+..|++
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al------------------------~~~~eAi~~le~ 71 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK------------------------QMIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH------------------------hHHHHHHHHHHH
Confidence 45566666666666666666666666666666555543111100 012344555555
Q ss_pred HHhcCCCChHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHccccccH
Q psy9209 170 AHMVRPNDPRMLTALGEAFEKQ-----------EKISEAMKCYNKSRAIGDADG 212 (349)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~ 212 (349)
+++++|+...+++++|.+|..+ |++++|+.+|+++++++|++.
T Consensus 72 AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5555555555555555554444 467777777777777777653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=108.67 Aligned_cols=104 Identities=21% Similarity=0.247 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+..+++++...+. ....+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~ 127 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---ccchHh
Confidence 4555666666666666666666666555332 2556777888888888888888888888877654 223344
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
...++..+|.++...|++++|..++++++++..
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888888877643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-15 Score=103.32 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccccccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHH
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIGDADG---KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA 257 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++...|+ .+..+.+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~ 78 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT------HDKAAGG 78 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------STTHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC------CcccHHH
Confidence 45566666666666666666666666666555 56666666666666666666666666666665 1112566
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH
Q psy9209 258 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301 (349)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 301 (349)
++.+|.++...|++++|+..|++++...|+++.+......+...
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 66666666666666666666666666666666555555544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=107.42 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=67.2
Q ss_pred HhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcch----------HHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 50 LKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESS----------SQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 50 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+.+.+++|+..++++++++|++++++..++.+... .+++ ++|+..|+++++++|+...+++++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~---l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE---LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 456789999999999999999999998777765433 3554 355555555555555555555555555
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP 178 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (349)
|..+|.+ .|+.+.+ .|++++|+.+|+++++++|++.
T Consensus 90 y~~lg~l-------------~P~~~~a----------~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFL-------------TPDETEA----------KHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHH-------------CCCHHHH----------HHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhccc-------------Ccchhhh----------hccHHHHHHHHHHHHHhCCCCH
Confidence 5554421 2222111 1467777777777777777754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=124.57 Aligned_cols=153 Identities=13% Similarity=0.060 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
.+..+|..++..|++++|+..|++++...|++.. +...+++.++...+. ..++.++|.++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-----------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-----------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-----------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 4445555555555555555555555555444321 111233333332221 14889999999
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHhhCHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEA-FEKQEKISEAMK 199 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~ 199 (349)
..+|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|+++.++..++.+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 445677888999
Q ss_pred HHHHHHccccccHH
Q psy9209 200 CYNKSRAIGDADGK 213 (349)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (349)
.|.+++...|.++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999887643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-15 Score=122.52 Aligned_cols=125 Identities=13% Similarity=0.170 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----------------hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIE----------------INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
...+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45678888888899999999999998888 67778899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 174 RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888877653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=102.73 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=107.9
Q ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-------HHH
Q psy9209 142 LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-------GKA 214 (349)
Q Consensus 142 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~ 214 (349)
..+..+..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhC
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (349)
+..+|.++...|++++|+..|++++...|+ ...+..++.+....+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT----------PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHH
Confidence 999999999999999999999999998775 677777777765543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=105.00 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEI---NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
|++++|+..|+++++. +|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444 3444444444555555555555555555555554554444445555555555555555555
Q ss_pred HHHHHccccccHH
Q psy9209 201 YNKSRAIGDADGK 213 (349)
Q Consensus 201 ~~~a~~~~~~~~~ 213 (349)
+++++...|+++.
T Consensus 84 ~~~al~~~p~~~~ 96 (117)
T 3k9i_A 84 LLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHhCCCcHH
Confidence 5555544444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=101.56 Aligned_cols=107 Identities=8% Similarity=-0.009 Sum_probs=74.9
Q ss_pred ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 208 GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
+|+++.++..+|.++...|++++|+..+++++...|. ...++..+|.++...|++++|+.+++++++..|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4556666666777777777777777777777776666 5666777777777777777777777777777776
Q ss_pred --hHHHHHHHHHHHHHc-CCCCCchhHHHHhhhcCCCCC
Q psy9209 288 --AEEAKSLLRSIAQKR-QPDESSSQPMECAVVLDPVPP 323 (349)
Q Consensus 288 --~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~ 323 (349)
+..++..++.++... |++++|++++++++...|.++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 677777777777777 777777777777777766654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=119.60 Aligned_cols=140 Identities=22% Similarity=0.216 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
..+..+|..++..|++++|+..|+++++..+..+. ..........+|....++.++|.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA---------------------AAEDADGAKLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---------------------HSCHHHHGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc---------------------ccChHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999887665420 111344455778888999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHH
Q psy9209 120 YMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199 (349)
Q Consensus 120 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (349)
+..+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred H
Q psy9209 200 C 200 (349)
Q Consensus 200 ~ 200 (349)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=102.67 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=77.5
Q ss_pred hhCHHHHHHHHHHHHcc---ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH
Q psy9209 191 QEKISEAMKCYNKSRAI---GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK 267 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (349)
+|++++|+.+|+++++. +|.++.++..+|.++...|++++|+..|++++...|+ .+.++..+|.++..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---------HQALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHH
Confidence 56777788888888877 5777778888888888888888888888888888777 67778888888888
Q ss_pred hCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCC
Q psy9209 268 ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE 306 (349)
Q Consensus 268 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 306 (349)
.|++++|+..+++++...|+++........+....+..+
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLD 112 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777766655555544444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-14 Score=104.55 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND------ 177 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 177 (349)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4567778888888888888888888888765432 2467788888888888888888888887764432
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHcccc------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 178 PRMLTALGEAFEKQEKISEAMKCYNKSRAIGD------ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..++..+|.++...|++++|+.++++++...+ ....++..+|.++...|++++|+..+++++.+...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888887632 23567788899999999999999999998887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-11 Score=106.41 Aligned_cols=281 Identities=9% Similarity=-0.068 Sum_probs=188.0
Q ss_pred CcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhh---hhchHHHHHHHHHHHHh
Q psy9209 10 NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANN-LDTAYKCAQKCLQH---EETAEEAKSLLRSIAQK 85 (349)
Q Consensus 10 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~---~~~~~~~~~~l~~~~~~ 85 (349)
|+++.+..+|++++...| +. .+|..........++ .+.....|+.++.. +|.+...|..+..+...
T Consensus 28 ~~~e~~~~iferal~~~p-------s~---~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~ 97 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-------NL---DLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGK 97 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-------CH---HHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHhccCC-------CH---HHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHh
Confidence 778888888888884332 11 345555544444442 34556677777753 56666666555543211
Q ss_pred c-CCCcchHHHHHHHHHHHhhCcccHH-------------------------------------------------HHHH
Q psy9209 86 R-QPDESSSQAVLYFQRALKLNPNYLG-------------------------------------------------VWTL 115 (349)
Q Consensus 86 ~-~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 115 (349)
. ...++.+.+...|++++..-+.... .|..
T Consensus 98 ~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 98 IEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 1 0135677788888888774222111 1111
Q ss_pred HHHHHHhcCC---------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy9209 116 LGHEYMEMKN---------TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGE 186 (349)
Q Consensus 116 la~~~~~~~~---------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 186 (349)
... ...++ .+.....|++++...|..+..|...+..+...|+.+.|...|++++.. |.+...+...+.
T Consensus 178 y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~ 254 (493)
T 2uy1_A 178 LID--LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL 254 (493)
T ss_dssp HHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred HHH--HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence 111 11121 234567888888888888888888888888888889999999988888 877655443333
Q ss_pred ----------------------------------------HHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC
Q psy9209 187 ----------------------------------------AFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226 (349)
Q Consensus 187 ----------------------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 226 (349)
...+.+..+.|...|+++ ...+....+|...+.+....+
T Consensus 255 ~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 255 VMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp HTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC
Confidence 233467788888999988 433335567766676666555
Q ss_pred -cHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCC
Q psy9209 227 -ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPD 305 (349)
Q Consensus 227 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 305 (349)
+.+.|...|+.+++..|+ .+..+...+......|+.+.|...|+++. .....|..........|+.
T Consensus 334 ~d~~~ar~ife~al~~~~~---------~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKHPD---------STLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp CCSHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCH
T ss_pred CChHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCH
Confidence 589999999999988777 56677777888888899999999999873 4567777777777888998
Q ss_pred CCchhHHHHhhh
Q psy9209 306 ESSSQPMECAVV 317 (349)
Q Consensus 306 ~~A~~~~~~a~~ 317 (349)
+.+...+++++.
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-12 Score=110.22 Aligned_cols=183 Identities=9% Similarity=-0.044 Sum_probs=123.4
Q ss_pred hhC-cHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc
Q psy9209 8 KLN-ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 86 (349)
Q Consensus 8 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 86 (349)
+.| +...|..+|++++...|. |+++.+..+|++++...| +.+.|..+......+
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~ 60 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKV 60 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHh
Confidence 456 377888888888854432 789999999999999888 566777766655544
Q ss_pred CCCcchHHHHHHHHHHHhh---CcccHHHHHHHHHHHH----hcCChHHHHHHHHHHHHhCcccHH--------------
Q psy9209 87 QPDESSSQAVLYFQRALKL---NPNYLGVWTLLGHEYM----EMKNTNAAIQCYRQAIEINNLDYR-------------- 145 (349)
Q Consensus 87 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~a~~~~~~~~~-------------- 145 (349)
. ...+.....|+.++.. +|.....|......+. ..|+.+.+..+|++++...+.+..
T Consensus 61 ~--~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~ 138 (493)
T 2uy1_A 61 S--QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELN 138 (493)
T ss_dssp C------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred C--chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc
Confidence 2 2345567778888864 6777888888777654 346788899999999884222111
Q ss_pred -----------------------------------HHHHHHHHHHHhCC---------HHHHHHHHHHHHhcCCCChHHH
Q psy9209 146 -----------------------------------AWYGLGQTYEILRL---------PYYGLYYYKQAHMVRPNDPRML 181 (349)
Q Consensus 146 -----------------------------------~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~ 181 (349)
.|..... ...++ .+.....|++++...|..+.+|
T Consensus 139 ~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW 216 (493)
T 2uy1_A 139 KITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID--LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVY 216 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 1111111 11121 2345678888888888888999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 220 (349)
...+..+...|+.++|...|++++.. |.+...+...+.
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~ 254 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL 254 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence 99998888889999999999999888 877655554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=88.71 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 94 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CC
Q psy9209 174 RP 175 (349)
Q Consensus 174 ~~ 175 (349)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=90.46 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 127 NAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 127 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
++|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy9209 207 IGDAD 211 (349)
Q Consensus 207 ~~~~~ 211 (349)
..|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=94.10 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------hHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND------PRMLTA 183 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~ 183 (349)
+.++..+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..+++++.++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777777777777777777777777777766 566666
Q ss_pred HHHHHHHhhCHHHHHHHHH
Q psy9209 184 LGEAFEKQEKISEAMKCYN 202 (349)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~ 202 (349)
+|.++...|++++|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 6666666666655554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-13 Score=90.25 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=84.1
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh--
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA-- 288 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-- 288 (349)
++..+..+|.++...|++++|+..|++++...|. .+.++..+|.++...|++++|+..++++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH
Confidence 4567888999999999999999999999998888 78889999999999999999999999999999987
Q ss_pred ----HHHHHHHHHHHHHcCCCCCchhHHHHh
Q psy9209 289 ----EEAKSLLRSIAQKRQPDESSSQPMECA 315 (349)
Q Consensus 289 ----~~~~~~l~~~~~~~~~~~~A~~~~~~a 315 (349)
..++..++.++...|+++.|+..+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 888889999999999988888776653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-12 Score=83.22 Aligned_cols=83 Identities=30% Similarity=0.516 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
.+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHh
Q psy9209 189 EKQ 191 (349)
Q Consensus 189 ~~~ 191 (349)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-12 Score=82.84 Aligned_cols=85 Identities=27% Similarity=0.397 Sum_probs=80.9
Q ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHH
Q psy9209 142 LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221 (349)
Q Consensus 142 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 221 (349)
....++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy9209 222 YDKLN 226 (349)
Q Consensus 222 ~~~~~ 226 (349)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 87764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=106.50 Aligned_cols=127 Identities=11% Similarity=-0.047 Sum_probs=107.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCC---hH
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEI--------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-----RPND---PR 179 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~ 179 (349)
.+..+..+|+|++|+..+++++++ +|....++.++|.+|..+|+|++|+.++++++.+ .|++ ..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 445577899999999999999986 3445678899999999999999999999999986 3444 46
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc-----c---cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI-----G---DADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 242 (349)
.+.++|.+|..+|++++|+.+|++++.+ . |........++.++..++.+++|...|+++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999976 3 4445567789999999999999999999987644
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.5e-11 Score=83.89 Aligned_cols=111 Identities=23% Similarity=0.183 Sum_probs=77.4
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRLPYYGLY 165 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 165 (349)
+++++|+.+|+++.+.... .+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4667777777777766533 233 777777777777777777777765 456777777777776 677777777
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHH----hhCHHHHHHHHHHHHccc
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~ 208 (349)
+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777665 566777777777777 677777777777777653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-11 Score=102.83 Aligned_cols=120 Identities=14% Similarity=0.032 Sum_probs=91.7
Q ss_pred CCcchHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CcccHHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKL--------NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI--------NNLDYRAWYGLG 151 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~ 151 (349)
.+|++++|+..+++++++ +|....++.++|.+|..+|+|++|+.++++++++ .|.....+.+||
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 457888888888888764 2334556788888888888888888888888875 344566778888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhc-----CCCCh---HHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 152 QTYEILRLPYYGLYYYKQAHMV-----RPNDP---RMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.+|..+|++++|+.++++++.+ .|+++ .....++.++..++++++|...|.++.+.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888875 45544 55667888888888888888888887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-12 Score=83.59 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR-AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
+..|.++...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+..|+++++++|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 44566666777777777777777777776666 77777777777777777777777777777766665532 4
Q ss_pred CHHHHHHHHHHHHccccc
Q psy9209 193 KISEAMKCYNKSRAIGDA 210 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~ 210 (349)
.+.+++..|++++..+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 555666666665555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=81.84 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=35.9
Q ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 140 NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344555555555555555555555555555555555555555555555555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=81.35 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=68.1
Q ss_pred hCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--hHHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND--PRMLT 182 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~ 182 (349)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..|++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 3688889999999999999999999999999999999999999999999999999999999999998876543 23333
Q ss_pred HHHHHHHH
Q psy9209 183 ALGEAFEK 190 (349)
Q Consensus 183 ~l~~~~~~ 190 (349)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=82.64 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=100.3
Q ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----hhCHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMK 199 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 199 (349)
+++++|+.+|+++.+..+.. +. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 46899999999999876433 33 999999999999999999999987 789999999999998 899999999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcc
Q psy9209 200 CYNKSRAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKL 242 (349)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 242 (349)
+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987 578999999999999 899999999999999874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=80.72 Aligned_cols=89 Identities=8% Similarity=-0.008 Sum_probs=81.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMVRPNDPR-MLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN 226 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 226 (349)
+..|.++...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56889999999999999999999999999999 99999999999999999999999999999999888754 5
Q ss_pred cHHHHHHHHHHHHhcccc
Q psy9209 227 ETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 227 ~~~~A~~~~~~~~~~~~~ 244 (349)
.+.+++..|+++....|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 678888888888888776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-09 Score=88.83 Aligned_cols=142 Identities=13% Similarity=0.014 Sum_probs=100.5
Q ss_pred HHhhCcccHHHH--HHHHHHHHhcCC---hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH-------HHHH-HHHH
Q psy9209 102 ALKLNPNYLGVW--TLLGHEYMEMKN---TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP-------YYGL-YYYK 168 (349)
Q Consensus 102 ~~~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~-~~~~ 168 (349)
+....|.++.+| +..|..+...++ ..+|+.+|+++++++|+.+.++..++.+|.....+ ..++ ..+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334455555444 455665555444 46788888888888888877777777766421111 0111 1111
Q ss_pred --HHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 169 --QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 169 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
.++...|.++.++..++..+...|++++|+..+++++.++| +...+..+|.++...|++++|++.|.+++.++|.
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22345788888888888888888999999999999999987 4677788899999999999999999999999887
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=85.08 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=88.0
Q ss_pred HhcCCCChHHHHHHHHHHHH-----------hhCHHHHHHHHHHHHccccc--cHHHHHHHHHHHHhc-----CcHHHHH
Q psy9209 171 HMVRPNDPRMLTALGEAFEK-----------QEKISEAMKCYNKSRAIGDA--DGKALFKLAKLYDKL-----NETEAAA 232 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~ 232 (349)
-+.+|++++.++..|.+... .+...+|...++++++++|+ +..+|..+|.+|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 34577788877777766643 12357888899999999998 567899999998885 8999999
Q ss_pred HHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcccCC
Q psy9209 233 DLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK-ANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~ 287 (349)
.+|++++.++|+. ...+++..|..+.. +|++++|..++++++..+|.
T Consensus 225 ~~ferAL~LnP~~--------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 225 TAFEHLTRYCSAH--------DPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCTT--------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhCCCC--------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999999861 38888889998888 48999999999999988765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-09 Score=86.94 Aligned_cols=146 Identities=5% Similarity=-0.157 Sum_probs=104.5
Q ss_pred HHHHhCcccHHHH--HHHHHHHHHhC---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCH--------HHHHHHH
Q psy9209 135 QAIEINNLDYRAW--YGLGQTYEILR---LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKI--------SEAMKCY 201 (349)
Q Consensus 135 ~a~~~~~~~~~~~--~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~ 201 (349)
++....|.++.+| +..|..+...+ ...+|+.+|+++++++|+.+.++..++.++.....+ ......+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3444455554443 34455555444 357899999999999999999988888877632211 1111122
Q ss_pred HH--HHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 202 NK--SRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279 (349)
Q Consensus 202 ~~--a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (349)
+. ++..+|..+.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|.
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----------WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22 22446778888888888888889999999999999988764 6677888899999999999999999
Q ss_pred HHHcccCChHH
Q psy9209 280 KCLQHEETAEE 290 (349)
Q Consensus 280 ~a~~~~~~~~~ 290 (349)
+|+.++|..+.
T Consensus 335 ~AlrL~P~~~t 345 (372)
T 3ly7_A 335 TAFNLRPGANT 345 (372)
T ss_dssp HHHHHSCSHHH
T ss_pred HHHhcCCCcCh
Confidence 99999888764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.2e-09 Score=81.14 Aligned_cols=106 Identities=12% Similarity=0.118 Sum_probs=90.5
Q ss_pred hCcccHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHh-----hCHHHHHHH
Q psy9209 139 INNLDYRAWYGLGQTYEI---L--R------LPYYGLYYYKQAHMVRPN--DPRMLTALGEAFEKQ-----EKISEAMKC 200 (349)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~---~--~------~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~~ 200 (349)
.+|++++.++..|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 477888777766665532 1 2 347889999999999999 677999999999985 999999999
Q ss_pred HHHHHcccccc-HHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcccc
Q psy9209 201 YNKSRAIGDAD-GKALFKLAKLYDK-LNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 201 ~~~a~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~ 244 (349)
|+++++++|+. ..+++.+|..+.. .|++++|...+++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 9999999999988 49999999999999998876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-09 Score=68.31 Aligned_cols=72 Identities=8% Similarity=-0.087 Sum_probs=49.4
Q ss_pred CcccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy9209 106 NPNYLGVWTLLGHEYMEMKN---TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND 177 (349)
Q Consensus 106 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (349)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+...|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46666677777776655444 5677777777777777777777777777777777777777777777766663
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-07 Score=80.02 Aligned_cols=159 Identities=9% Similarity=-0.037 Sum_probs=110.4
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhC-cccHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHhC-cccHHHHHHH
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLN-PNYLGVWTLLGHEYMEMKN---------TNAAIQCYRQAIEIN-NLDYRAWYGL 150 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~---------~~~A~~~~~~a~~~~-~~~~~~~~~l 150 (349)
....+.+.|+.++|++.|+++.+.. +.+..+|..+-.++...+. .+.|.++|+++.... +.+..+|..+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3355667788888888887776643 1234555555555554433 577778887776642 2256677778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHhcCc
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMVR-PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI--GDADGKALFKLAKLYDKLNE 227 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 227 (349)
...|.+.|++++|..+++++.+.. +.+...|..+-..|.+.|+.++|..+|+++.+. .| +...+..+...+.+.|+
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCC
Confidence 888888888888888888777642 235667777777888888888888888887765 33 56677777788888888
Q ss_pred HHHHHHHHHHHHhc
Q psy9209 228 TEAAADLFMEFVSK 241 (349)
Q Consensus 228 ~~~A~~~~~~~~~~ 241 (349)
.++|.++++++.+.
T Consensus 191 ~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 191 ADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.1e-09 Score=72.37 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=79.9
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHHhCCHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK---NTNAAIQCYRQAIEIN-N-LDYRAWYGLGQTYEILRLPYYGL 164 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~ 164 (349)
+....+.+.|.+.++.+|.+.++.+.+|.++.+.+ +.++++..++..++.+ | ...++++.+|..+.+.|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 45566777788888888888899999999999988 5668999999999988 7 56888999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHH
Q psy9209 165 YYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~ 185 (349)
.++++++++.|++..+....-
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHH
Confidence 999999999998877655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=72.07 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcc-cccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLN---ETEAAADLFMEFVSKL-DTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
....+.+.|.+.+..++.+.++.+++|.++.+.+ +.++++..++.+++.. |.. ..+++++||..+++.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--------~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--------QRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--------hHHHHHHHHHHHHHc
Confidence 4556777788888888888999999999999988 6679999999999987 621 689999999999999
Q ss_pred CCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 269 NNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 269 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
|+|++|+.++++++++.|++..+......+..
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999888877665544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.3e-09 Score=67.81 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=57.2
Q ss_pred CcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 140 NNLDYRAWYGLGQTYEILRL---PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
+|+++.++..+|.++...++ .++|...++++++.+|+++.++..+|..++..|+|++|+.+++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56778888888888765555 6888888888888888888888888888888888888888888888887763
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.3e-09 Score=88.15 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc--------ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI--------GDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
++.++|.+|..+|+|++|+.++++++.+ +|+....+.++|.+|..+|++++|+..|++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443 2233334455555555555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.9e-07 Score=77.59 Aligned_cols=173 Identities=12% Similarity=0.032 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhcC-CCChHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEIN-NLDYRAWYGLGQTYEILR---------LPYYGLYYYKQAHMVR-PNDPRM 180 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~~~~~-~~~~~~ 180 (349)
.+..+-..+.+.|+.++|+++|+++.+.. +.+...|..+..++...+ ..+.|...|+++.... +.+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45556678889999999999999998852 224566777766665544 3688999999987753 236778
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHccc-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 181 LTALGEAFEKQEKISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
+..+...+.+.|++++|..+|+++.+.. ..+...|..+...+.+.|+.++|.++|+++....-.. +...|.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--------d~~ty~ 179 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--------EEPELA 179 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--------CHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--------CHHHHH
Confidence 9999999999999999999999988762 2267888999999999999999999999998753221 578899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHcc--cCChHHHH
Q psy9209 260 YLANHHLKANNLDTAYKCAQKCLQH--EETAEEAK 292 (349)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~ 292 (349)
.+...+.+.|+.++|..++++..+. .|+.....
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999999999999998653 56654443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=86.78 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=78.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCC---hHHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEI--------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-----RPND---PRML 181 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~ 181 (349)
.-+..+|++++|+..+++++++ +|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455778899999999988875 2334567888888898999999999999888875 3343 3567
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHcc-----ccccHH---HHHHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAI-----GDADGK---ALFKLAKLYD 223 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~~l~~~~~ 223 (349)
+++|.+|..+|++++|+.++++++++ .|+++. ++.+|+.+..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 88899999999999999999988876 344443 4445555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-08 Score=85.66 Aligned_cols=117 Identities=9% Similarity=-0.094 Sum_probs=93.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhc-----CCCCh---HHHHHHHHHHHHhhCHHHHHHHHHHHHcc--------ccccHHH
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMV-----RPNDP---RMLTALGEAFEKQEKISEAMKCYNKSRAI--------GDADGKA 214 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~ 214 (349)
..-+...|++++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ +|.....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999976 34444 67889999999999999999999999976 4555678
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA 268 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (349)
++++|.+|..+|++++|+..+++++.+.... ...++|....+..+|+.+....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~-lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT-HGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999875431 1234566777777777776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=85.10 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHH
Q psy9209 124 KNTNAAIQCYRQAIEI--------NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-----RPND---PRMLTALGEA 187 (349)
Q Consensus 124 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~ 187 (349)
|+|++|+..+++++++ +|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.++|.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3455555555555543 1222344445555555555555555555555543 2222 2344555555
Q ss_pred HHHhhCHHHHHHHHHHHHcc
Q psy9209 188 FEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 188 ~~~~~~~~~A~~~~~~a~~~ 207 (349)
|..+|++++|+.+|++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7e-08 Score=64.59 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
++.-.+.+|..+...|++..|+.+|++++...+.. .........++..+|.++.++|++++|+.++++++++.|++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~--~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc--CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 45667889999999999999999999999876431 1112347899999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q psy9209 291 AKSLLRSI 298 (349)
Q Consensus 291 ~~~~l~~~ 298 (349)
+...++.+
T Consensus 82 ~~~n~~~~ 89 (104)
T 2v5f_A 82 ANGNLKYF 89 (104)
T ss_dssp HHHHHHHH
T ss_pred HHhhHHHH
Confidence 87777633
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-08 Score=64.52 Aligned_cols=76 Identities=13% Similarity=-0.110 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT 182 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (349)
+.-++.+|..++..|+|..|+..|+++++.. +....++..+|.++.++|+++.|+.++++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3455677777777777777777777777652 234566667777777777777777777777777777766655
Q ss_pred HHH
Q psy9209 183 ALG 185 (349)
Q Consensus 183 ~l~ 185 (349)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 555
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-06 Score=57.64 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=28.4
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..++.++|.+.|+.++......+.+|...|....++|+...|.+.+.+++.+.|.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3345555555555554444444555555555555555555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-06 Score=56.21 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=78.6
Q ss_pred hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcc-cccCCCCCCcchHHHHHHHHHHHH
Q psy9209 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEA---AADLFMEFVSKL-DTFAAPPDKTCGFFAFKYLANHHL 266 (349)
Q Consensus 191 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 266 (349)
......+...|.+....++....+.+++|.++....+... ++..++..+... |. ...+.++.||..++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~--------~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--------EQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------hHHHHHHHHHHHHH
Confidence 3445556666777766667788888888888888777665 888888887765 42 26788889999999
Q ss_pred HhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHH
Q psy9209 267 KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQ 300 (349)
Q Consensus 267 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 300 (349)
+.|+|++|+.+++..++..|++..+..+...+..
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999988888776655543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-06 Score=57.24 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHH---HHHHHHHHHHhC-c-ccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNA---AIQCYRQAIEIN-N-LDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
....+...|.+....++....+.+.+|.++....+... ++.+++..+..+ | ...+.++.+|..+++.|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455566666666666777788888888877776665 777887777766 5 456777788888888888888888
Q ss_pred HHHHHHhcCCCChHHHHHH
Q psy9209 166 YYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l 184 (349)
+++.+++..|++..+....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 8888888888777665443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-05 Score=55.49 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=83.3
Q ss_pred hCcccHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhCccc--------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 105 LNPNYLGVWTLLGHEYMEMKNT------NAAIQCYRQAIEINNLD--------YRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 105 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
+.|++++.|..........|+. ++-++.|++++..-|.. ...|...+.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4677888888887777777888 77788888888765532 4455666644 5668888999999988
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
+.++...+.+|...|..-.++|+...|...+.+++.+.|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 88877778888888888888999999999999998888865443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.8e-06 Score=57.38 Aligned_cols=132 Identities=12% Similarity=0.040 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCChH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD---------YRAWYGLGQTYEILRLPYYGLYYYKQAHMVR---PNDPR 179 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 179 (349)
++..-...+...|.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|+++++.. +..+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566677788899999998888877764333 2467888999999999999999999987652 22221
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
....++. ... ....... +.+.++.+.++.|+..+|++++|+..++..-.... .+.+..
T Consensus 102 ~~~~~~~----~ss-------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R----------t~kvnm 159 (167)
T 3ffl_A 102 VRPSTGN----SAS-------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR----------TPKINM 159 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC----------CHHHHH
T ss_pred ccccccc----cCC-------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc----------CHHHHH
Confidence 1111110 000 0001112 34567888899999999999999988765433222 577777
Q ss_pred HHHHHH
Q psy9209 260 YLANHH 265 (349)
Q Consensus 260 ~l~~~~ 265 (349)
.||++|
T Consensus 160 ~LakLy 165 (167)
T 3ffl_A 160 LLANLY 165 (167)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 788765
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=55.11 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=82.3
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccH---------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCc---ccHHHHHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYL---------GVWTLLGHEYMEMKNTNAAIQCYRQAIEINN---LDYRAWYGLG 151 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~ 151 (349)
..+...|.|+.|+-....++....+++ .++..+|..++..++|..|...|++++.... +.......++
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 334446899999999998777653333 3779999999999999999999999987532 2222211111
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 152 QTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
. ...+. .... .+.+.++.+.++.|+.+.|++++|+..++..- .....+.+...||.+|
T Consensus 108 ~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 108 N----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred c----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 0 00000 0111 23456788999999999999999999887642 2333677777888765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0007 Score=45.98 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 211 DGKALFKLAKLYDKLNET---EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
.+.+.+++|.++.+..+. .+++..++..+...|.. ..+.++.||..+.+.|+|++|..+.+.+++..|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 678888888888877654 47888888888876642 6888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q psy9209 288 AEEAKSLLRSIAQ 300 (349)
Q Consensus 288 ~~~~~~~l~~~~~ 300 (349)
+..+......+..
T Consensus 111 N~QA~~Lk~~Ie~ 123 (134)
T 3o48_A 111 NKQVGALKSMVED 123 (134)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9888777665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00072 Score=45.91 Aligned_cols=77 Identities=6% Similarity=-0.057 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNT---NAAIQCYRQAIEINNL-DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTAL 184 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 184 (349)
.+.+.+++|.++....+. .+++.+++..++.+|. ..+.++.+|..+.++|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456777778777776654 3577888888877773 467788888888888888888888888888888877665443
Q ss_pred H
Q psy9209 185 G 185 (349)
Q Consensus 185 ~ 185 (349)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0015 Score=45.01 Aligned_cols=77 Identities=8% Similarity=-0.036 Sum_probs=56.5
Q ss_pred cccHHHHHHHHHHHHhcCChH---HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Q psy9209 107 PNYLGVWTLLGHEYMEMKNTN---AAIQCYRQAIEINN-LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT 182 (349)
Q Consensus 107 ~~~~~~~~~la~~~~~~~~~~---~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (349)
...+.+.+++|.++....+.+ +++.+++..+...| ...+.++.+|..++++|+|++|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 345677788888887776543 57778888777766 35677778888888888888888888888888888766544
Q ss_pred H
Q psy9209 183 A 183 (349)
Q Consensus 183 ~ 183 (349)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0012 Score=45.52 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=68.3
Q ss_pred cccHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHccc
Q psy9209 209 DADGKALFKLAKLYDKLNET---EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHE 285 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 285 (349)
...+.+.+++|.++.+..+. .+++..++..+...|.. ..+.++.||..+++.|+|++|..+.+..++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34778888898888877654 47888888888876642 68889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHH
Q psy9209 286 ETAEEAKSLLRSIAQ 300 (349)
Q Consensus 286 ~~~~~~~~~l~~~~~ 300 (349)
|++..+..+...+..
T Consensus 108 P~n~QA~~Lk~~Ie~ 122 (144)
T 1y8m_A 108 RNNKQVGALKSMVED 122 (144)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 999888777655543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.003 Score=52.48 Aligned_cols=191 Identities=8% Similarity=-0.096 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCChHH----
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDY-----RAWYGLGQTYEI-LRLPYYGLYYYKQAHMVRPNDPRM---- 180 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~---- 180 (349)
.+...+|..|...|++++-.+++......-+.-+ .....+-..+.. -+..+.-++....+++...+.-..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888877776654433222 222233333322 233444455555555433222222
Q ss_pred --HHHHHHHHHHhhCHHHHHHHHHHHHccc------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCC-CCC
Q psy9209 181 --LTALGEAFEKQEKISEAMKCYNKSRAIG------DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAP-PDK 251 (349)
Q Consensus 181 --~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~ 251 (349)
-..+|..|...|+|.+|...+.+..+.- ....+++..-..+|...+++.++...+.++...... + .++
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a---i~~~p 176 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA---IYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc---CCCCH
Confidence 2378999999999999998888877641 113456677788899999999999999999776533 2 112
Q ss_pred cchHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcccC-----ChHHHHHHHHHHHHHcCC
Q psy9209 252 TCGFFAFKYLANHHL-KANNLDTAYKCAQKCLQHEE-----TAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~ 304 (349)
...+.....-|..+. ..++|.+|...|-.+++... ....+...++.+....++
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 234566667788899 89999999999998875332 222334445555555454
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.016 Score=48.17 Aligned_cols=168 Identities=11% Similarity=-0.015 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH--HHHHHHHHHhcC-CCcchHHHHHHHHHHHhhCcccHHH----
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA--KSLLRSIAQKRQ-PDESSSQAVLYFQRALKLNPNYLGV---- 112 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~---- 112 (349)
.+...+|..|...|+.++-.+.+......-+.-+.+ ......+...+. ..+..+.-++.+..+++...+.-..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998876554332222 122222222222 2355566677777777643332222
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCCh---
Q psy9209 113 --WTLLGHEYMEMKNTNAAIQCYRQAIEIN------NLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR---PNDP--- 178 (349)
Q Consensus 113 --~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~--- 178 (349)
-..+|..|...|+|.+|.+.+.+..+.- ....+++.....+|...+++.++...+.++.... +.+|
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2478999999999999999999988741 1235677888899999999999999999887652 2233
Q ss_pred -HHHHHHHHHHH-HhhCHHHHHHHHHHHHcc
Q psy9209 179 -RMLTALGEAFE-KQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 179 -~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~ 207 (349)
.....-|..+. ..++|.+|...|-++++.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 34456688888 899999999999988754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0012 Score=59.44 Aligned_cols=119 Identities=8% Similarity=0.083 Sum_probs=88.4
Q ss_pred hcCC-HHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--------Ccc----------cHH
Q psy9209 51 KANN-LDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKL--------NPN----------YLG 111 (349)
Q Consensus 51 ~~~~-~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~----------~~~ 111 (349)
..|+ ++.|+..+++....+|.....+ ....++.......+--+|+....+.++. .+. ...
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 5889999999999888764332 2222222222223456677777777642 122 223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+...+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45666888889999999999999999999999999999999999999999999888776
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.029 Score=49.81 Aligned_cols=242 Identities=8% Similarity=-0.052 Sum_probs=139.3
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc
Q psy9209 62 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN 141 (349)
Q Consensus 62 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 141 (349)
+...+...|+.+....+-......+.+.+++..-+.++.. .|.+..............|+..+|.....++.....
T Consensus 58 v~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 3444555666665543333332333334677766665543 377777777788888888988777776666544321
Q ss_pred cc------------------HHHHHHHHHHHHHhCCHHHHHHHHHH-------------HHhcCCCChH-----------
Q psy9209 142 LD------------------YRAWYGLGQTYEILRLPYYGLYYYKQ-------------AHMVRPNDPR----------- 179 (349)
Q Consensus 142 ~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~~-------------~~~~~~~~~~----------- 179 (349)
.. ...+..........|+...|...... ++..+|....
T Consensus 134 ~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~ 213 (618)
T 1qsa_A 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF 213 (618)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHH
T ss_pred CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChh
Confidence 11 11222223334444554444333221 1111332221
Q ss_pred --HHHHHHHHHHHhhCHHHHHHHHHHHHccccccH----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 180 --MLTALGEAFEKQEKISEAMKCYNKSRAIGDADG----KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 180 --~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
.....+.......+.+.|...+.+.....+-+. ..+..++.-....+...++...+.+......+
T Consensus 214 ~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~--------- 284 (618)
T 1qsa_A 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS--------- 284 (618)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC---------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC---------
Confidence 122334444556688888888877654322221 22333444444445356777777765543332
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
.. ....++....+.|+++.|..+|+.+-..........+++|..+...|+.++|...|+++..
T Consensus 285 ~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22 2333444456779999999999887665456678889999999999999999999999875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0026 Score=57.41 Aligned_cols=115 Identities=10% Similarity=-0.052 Sum_probs=86.2
Q ss_pred Ccc-hHHHHHHHHHHHhhCcccHHHHHHHHHHHH--hc-CChHHHHHHHHHHHHh--------C----------cccHHH
Q psy9209 89 DES-SSQAVLYFQRALKLNPNYLGVWTLLGHEYM--EM-KNTNAAIQCYRQAIEI--------N----------NLDYRA 146 (349)
Q Consensus 89 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--~~-~~~~~A~~~~~~a~~~--------~----------~~~~~~ 146 (349)
.++ ++.|+..+++....+|.... ++..+.+.. .. .+--+|+..+.+.++. . |.....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 355 58899999999999987543 333232222 22 2334677777777642 1 112334
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 147 WYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 147 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
+..-+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5556777888999999999999999999999999999999999999999999888876
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.045 Score=46.69 Aligned_cols=194 Identities=8% Similarity=-0.091 Sum_probs=121.2
Q ss_pred hCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC-
Q psy9209 9 LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ- 87 (349)
Q Consensus 9 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~- 87 (349)
.|++.+|++.+....+.. ....+.... ..+...+...+...|+++...+.+.-..........+...+......+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~-r~~~d~~s~--~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKT-RQASDLASS--KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSSCSTTTC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHh-hhccchhhH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 478889988875544322 222222222 2578888899999999998877766544433222222111111111110
Q ss_pred CCcchHHHHHHHHHHHhh----Cc-------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----Cc--ccHHHHHHH
Q psy9209 88 PDESSSQAVLYFQRALKL----NP-------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NN--LDYRAWYGL 150 (349)
Q Consensus 88 ~~~~~~~A~~~~~~~~~~----~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~--~~~~~~~~l 150 (349)
.....+. ......+.. .. ........++.++...|++.+|...+.....- .+ .-.+.+...
T Consensus 106 ~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 106 SSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred cCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 0011111 111122211 11 12345578999999999999999999987642 11 125678888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh---cCCCCh----HHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHM---VRPNDP----RMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
..++...+++..|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++..
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999999998742 233333 45677899999999999999999998765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.019 Score=53.13 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=59.1
Q ss_pred HHHHhcCCHHHHHH-HHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC
Q psy9209 47 NHHLKANNLDTAYK-CAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN 125 (349)
Q Consensus 47 ~~~~~~~~~~~A~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 125 (349)
......+++++|.. .+.. +. ++.. +..+...+...|.++.|++..+ ++... .......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-i~-~~~~------~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-VE-GKDS------LTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-CC-CHHH------HHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhc-CC-chHH------HHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCC
Confidence 34456788888865 3311 11 0110 1222223333467777665442 12222 234567788
Q ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 126 TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 126 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
++.|.+..+. .++...|..+|..+...++++.|+.+|.++
T Consensus 668 ~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 668 LTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8888877532 345678888888888888888888888876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.013 Score=54.31 Aligned_cols=126 Identities=11% Similarity=0.014 Sum_probs=80.1
Q ss_pred CcchHHHHH-HHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 89 DESSSQAVL-YFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 89 ~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
.+++++|.+ .+ ..-|+ ......+...+...|.++.|++..+ ++... .......|++++|.+..
T Consensus 612 ~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 612 RGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLL 675 (814)
T ss_dssp TTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHH
Confidence 378888765 33 11120 1223666677888899888887653 22222 23456789999998886
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc--------cccHHHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIG--------DADGKALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
+. .+++..|..+|..+.+.|+++.|+.+|.++-... ..+...+..++......|++..|...|
T Consensus 676 ~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 676 TD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp TT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 43 3678899999999999999999999999874321 223333444444555555555554443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.043 Score=38.94 Aligned_cols=116 Identities=12% Similarity=-0.015 Sum_probs=69.5
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQ 169 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 169 (349)
.+++.++-.-.- +-|..++....++.++.-.|+|..++-.+.+ -+...+.+.-+.||...+++..|+..++.
T Consensus 16 ~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~ 87 (242)
T 3kae_A 16 RDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLES 87 (242)
T ss_dssp TCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655433222 2334445556677777788888877766532 23455666777788888888888888888
Q ss_pred HHhc-----------------CCCChH-HHHHHHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 170 AHMV-----------------RPNDPR-MLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 170 ~~~~-----------------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
.+.- +|.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.
T Consensus 88 il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 88 ILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 8732 122222 3445666666777777777777666666664333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.072 Score=38.51 Aligned_cols=100 Identities=16% Similarity=0.007 Sum_probs=53.0
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHH
Q psy9209 155 EILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL 234 (349)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 234 (349)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-.. ..+..+|...|+.+.-.+.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHH
Confidence 3566666666665544 45566677777777777777777776665321 1233344445555443333
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
-+.+..... +.....++...|+++++++.|.+.
T Consensus 83 a~iA~~~g~--------------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRED--------------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTTC--------------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCcc--------------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333322111 122234455667777777766554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.095 Score=37.87 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=51.0
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. +-.+..+|...|+.++-...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 4667777776665543 3456677777777777777777777766521 12233344445555443333
Q ss_pred HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy9209 201 YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236 (349)
Q Consensus 201 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 236 (349)
-+.+..... +.....++..+|+++++++.|.
T Consensus 83 a~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 83 QNIAQTRED-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 333322211 1112233445566666665553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.72 E-value=0.38 Score=44.71 Aligned_cols=258 Identities=5% Similarity=-0.083 Sum_probs=135.0
Q ss_pred hCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh-------chHHHHHHHHH
Q psy9209 9 LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE-------TAEEAKSLLRS 81 (349)
Q Consensus 9 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-------~~~~~~~~l~~ 81 (349)
.|+.++++..+.+.+ +.. ...+.....-+++.+|.++...+ .++...+...+..+. ......-....
T Consensus 387 ~g~~~~gl~~L~~yL---~~~-~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 387 KGNLLEGKKVMAPYL---PGS-RASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp SSCTTTHHHHHTTTS---TTS-CCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhc---ccc-CCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 455566665554433 110 02223334457778888776665 367777777765432 11122222334
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCcccH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNPNYL--GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
+|.++.-.++ +++.+.+...+..+.... .+-..+|.++.-.|+-+-...++..+.+...+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 5666654443 567777777776443222 3446778888888887766666666665443333333445555567788
Q ss_pred HHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPR----MLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
.+.+....+..... .++. +-..+|..|...|+...-..++..+..-..++..-...+|......|+.+.+...+
T Consensus 540 ~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 87777776665543 2332 23356677778888655555776666543333332233333344455544333333
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
..... ..+ ..-...+-..+|.+....++ .+++..+.+...
T Consensus 618 ~~L~~-~~d------~~VR~gAalALGli~aGn~~-~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSK-SHN------AHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK 657 (963)
T ss_dssp TTGGG-CSC------HHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT
T ss_pred HHHHh-cCC------HHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc
Confidence 22221 111 11112222333443333343 678888887754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.074 Score=41.18 Aligned_cols=58 Identities=12% Similarity=-0.102 Sum_probs=32.8
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP 178 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (349)
.+.|+.++|+......++.+|.+......+..+++-.|+++.|.+.++.+.+++|...
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3445555555555555555555555555555555555555555555555555555543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.092 Score=37.29 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=81.2
Q ss_pred HhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHH
Q psy9209 50 LKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAA 129 (349)
Q Consensus 50 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 129 (349)
++-.+++.++-.-.-.....|. +..+..+...+ .|.+..++-.+.. -+...+.+..+.||...++|..|
T Consensus 13 ~kY~dYdt~~fLsa~L~~~~~e----Y~lL~~I~Lyy--ngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA 81 (242)
T 3kae_A 13 IRYRDYETAIFLAACLLPCKPE----YRMLMSIVLYL--NGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKA 81 (242)
T ss_dssp HHTTCHHHHHHHHHHHC----C----THHHHHHHHHH--TTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccccHHHHHHHHHccCChH----HHhhhhhhhhh--cchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHH
Confidence 3456777765443333333332 22333333333 5899988876533 34567778889999999999999
Q ss_pred HHHHHHHHH--h--C-------------cccHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Q psy9209 130 IQCYRQAIE--I--N-------------NLDYR-AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRM 180 (349)
Q Consensus 130 ~~~~~~a~~--~--~-------------~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (349)
+..+++.++ . + |.+.+ .+..+|.++...|+-++|+.++.......|-.+.+
T Consensus 82 ~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 82 IKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 999999994 2 2 23333 45678999999999999999999999887765433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.036 Score=51.61 Aligned_cols=96 Identities=7% Similarity=-0.052 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc----ccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchH
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI----GDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGF 255 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
.+..+-..|.+.|+.++|...|....+. -.-+...|..+...+.+.|+.++|.+.|+++....-.. +.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--------Dv 200 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--------DL 200 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--------CH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--------cH
Confidence 3444445555555555555555443221 11134445555555555555555555555554322110 24
Q ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHHHHc
Q psy9209 256 FAFKYLANHHLKANNL-DTAYKCAQKCLQ 283 (349)
Q Consensus 256 ~~~~~l~~~~~~~g~~-~~A~~~~~~a~~ 283 (349)
..|..+...+.+.|+. ++|.++++++.+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4445555555555542 444555555443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.13 Score=39.91 Aligned_cols=60 Identities=13% Similarity=0.006 Sum_probs=54.9
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYR 145 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 145 (349)
..+.|+.++|++.....++.+|.+......+..++.-.|+++.|.+-++.+.+++|....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 456799999999999999999999999999999999999999999999999999998643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.043 Score=51.09 Aligned_cols=98 Identities=7% Similarity=-0.078 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEI----NNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR-PNDPRMLTAL 184 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 184 (349)
...+..+-..|.+.|+.++|..+|.++.+. -.-+...|..+...|.+.|+.++|.+.|+++.+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346788889999999999999999876542 23367889999999999999999999999998752 3356778888
Q ss_pred HHHHHHhhC-HHHHHHHHHHHHcc
Q psy9209 185 GEAFEKQEK-ISEAMKCYNKSRAI 207 (349)
Q Consensus 185 ~~~~~~~~~-~~~A~~~~~~a~~~ 207 (349)
-.++.+.|+ .++|..+++++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 888999988 47888999998876
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.015 Score=49.32 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccc--cccH----HH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN---DPRMLTALGEAFEKQEKISEAMKCYNKSRAIG--DADG----KA 214 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~----~~ 214 (349)
..++..+|..|...|+++.|.+.|.++...... ..+.+.....++...+++..+...+.++.... ..++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 345667777777777777777777776654322 23556666666777777777777777765441 1112 23
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 215 LFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 215 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
....|.++...++|.+|...|-.++..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 334455566666777776666666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.23 Score=48.05 Aligned_cols=145 Identities=16% Similarity=0.052 Sum_probs=94.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------------------
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR-------------------- 174 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------- 174 (349)
.+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445566666665544 334456666677888999999999999999988764320
Q ss_pred ---CCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc-cH----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccC
Q psy9209 175 ---PNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA-DG----KALFKLAKLYDKLNETEAAADLFMEFVSKLDTFA 246 (349)
Q Consensus 175 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 246 (349)
...+..|..+..++.+.|.++.++++-+.|++..+. +. ..|.++-..+...|+|++|...+...-...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---- 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---- 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH----
Confidence 112245666777888888899999998888876432 22 256777788888899999877765432211
Q ss_pred CCCCCcchHHHHHHHHHHHHHhCCHHH
Q psy9209 247 APPDKTCGFFAFKYLANHHLKANNLDT 273 (349)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (349)
.....+..|....+..|..+.
T Consensus 969 ------~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 ------LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp ------SCHHHHHHHHHHHHHHCCHHH
T ss_pred ------HHHHHHHHHHHHHHhCCChhh
Confidence 135556666666666655443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.092 Score=43.90 Aligned_cols=112 Identities=11% Similarity=-0.115 Sum_probs=76.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhcCCCChHHHHHHHHHHHHhhCHH
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG-LYYYKQAHMVRPNDPRMLTALGEAFEKQEKIS 195 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (349)
|......|+.+.|...+.+++.+.....-. ... ...+-.+ ...+++.. ..+...++..+...|++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHH
Confidence 333445678888888888888864321100 000 0111111 11111111 134556778888999999
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 196 EAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 196 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
+++..+..++..+|-+-.++..+..++...|+..+|+..|+++...
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887653
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.039 Score=47.49 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 114 TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 114 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
..+|.+......+..|..+|.+|..+.|.+...+..||.+....|+.-+|+-+|-+++......+.+..++...+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555444455555554444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.073 Score=44.50 Aligned_cols=105 Identities=11% Similarity=-0.030 Sum_probs=66.9
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHH-HHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAA-IQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
.|+.+.|...+.+++.+.....-. .+ ....+-.+ ...+++ ....+...++..+...|++.+++..+
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~-----~~--~~~~w~~~~r~~l~~------~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLD-----DL--RDFQFVEPFATALVE------DKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTG-----GG--TTSTTHHHHHHHHHH------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCC-----CC--CchhHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888888775321100 00 00111111 111111 12234455677777888888888888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHc
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRA 206 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 206 (349)
..++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus 195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888877654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.039 Score=47.53 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE 155 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 155 (349)
..+..|..+|.+|..+.|.++..++.+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666665554445555555555444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.43 Score=40.64 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHcc----cc--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCc
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAI----GD--ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKT 252 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 252 (349)
.....++.++...|++.+|...+.....- .+ .-.+.+.....++...+++..|...++++....... .....
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~ 215 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHH
Confidence 45577899999999999999999887532 11 125677788889999999999999999875322110 11122
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Q psy9209 253 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 284 (349)
.....+...|.++...++|.+|..+|..+...
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34567778899999999999999999998764
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.15 Score=43.75 Aligned_cols=124 Identities=11% Similarity=0.022 Sum_probs=58.9
Q ss_pred cCCCcchHHHHHHHHHHHh-----------hCcccHHHHHHHHHHHHhcCChHHHHH----------HHHHHHHh-----
Q psy9209 86 RQPDESSSQAVLYFQRALK-----------LNPNYLGVWTLLGHEYMEMKNTNAAIQ----------CYRQAIEI----- 139 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~----------~~~~a~~~----- 139 (349)
+...+++++|.++-...+. +++-...+|+..+.++...|+...... .+..++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4456888888887765541 123345677777888877777655322 22222221
Q ss_pred Cc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 140 NN-LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND-------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 140 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
++ .....+..+-+.|...+.++.|..+..++. .|.. ...++.+|.++..+++|.+|..++..|+...|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 22 235677888899999999999999999985 4432 2567788999999999999999999999987653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.036 Score=47.10 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCh----H
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN---LDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVR--PNDP----R 179 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~ 179 (349)
...++..+|..|...|+++.|.+.|.++..... ...+.+..+..++...+++..+..++.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 345678999999999999999999999887532 347788899999999999999999999987652 2233 2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 180 MLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
.....|.++...++|.+|...|-.++..
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3445677788899999999999888765
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.09 Score=45.07 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=58.8
Q ss_pred HHHhCCHHHHHHHHHHHHh---c--------CCCChHHHHHHHHHHHHhhCHHHHH----------HHHHHHHc-----c
Q psy9209 154 YEILRLPYYGLYYYKQAHM---V--------RPNDPRMLTALGEAFEKQEKISEAM----------KCYNKSRA-----I 207 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~---~--------~~~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~a~~-----~ 207 (349)
+...+++++|..+-...+. + ++-...+|+.++.++...|+..... ..+-.++. .
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3456677777666554441 1 2334466777777777776655422 12222221 1
Q ss_pred cc-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 208 GD-ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 208 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
++ .....+..+-+.|...+.+++|..+..++. .|.. ..........++.+|.++.-+++|.+|.+++..|+...|
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 22 235567778888999999999999988874 4431 112233567788899999999999999999999998766
Q ss_pred C
Q psy9209 287 T 287 (349)
Q Consensus 287 ~ 287 (349)
.
T Consensus 302 ~ 302 (523)
T 4b4t_S 302 H 302 (523)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=1.3 Score=39.39 Aligned_cols=189 Identities=8% Similarity=-0.082 Sum_probs=114.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 117 GHEYMEMKNTNAAIQCYRQAIEINNLDY----RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 117 a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
+.......+.+.|...+.+.....+-+. ..+..++.-....+...++...+.+.....+++. ..-..+......|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCC
Confidence 4444455577888888877654322221 2222333333344435677777777665444333 3333444455679
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---------CC---C---CCCc--c--
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTF---------AA---P---PDKT--C-- 253 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~---~---~~~~--~-- 253 (349)
+++.|..++..+-......+...+-+|..+...|+.++|...|+++.... +. +. . ...+ .
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~-~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~ 378 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHHHHHcCCCCCCCCCCCChhHHhh
Confidence 99999999987665545567778889999999999999999998876531 10 00 0 0000 0
Q ss_pred -hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCch
Q psy9209 254 -GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS 309 (349)
Q Consensus 254 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 309 (349)
....-...+..+...|....|...+.......+ +.-...++.+....|.++.++
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v 433 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSV 433 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHH
Confidence 112234567788899999999998888776432 233345566655566554444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.36 E-value=1.4 Score=41.16 Aligned_cols=185 Identities=11% Similarity=-0.017 Sum_probs=97.6
Q ss_pred CcchHHHHHHHHHHHhhC-ccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc------cc----HHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLN-PNY----LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN------LD----YRAWYGLGQT 153 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~----~~~~~~l~~~ 153 (349)
.|+.++++..+.+.+... ..+ ..+.+.+|.++...+ ++++..+...+..+. +. ..+-..||.+
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 366677777776655421 111 234455555555444 467777777765432 01 1345567776
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHH
Q psy9209 154 YEILRLPYYGLYYYKQAHMVRPNDP--RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 231 (349)
+...++ +++...+...+..+.... .+-..+|.++...|+-+-...++..+.+...+...-...+|......|+.+.+
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred hcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 665554 456666666665332111 23445677777777766555665555544333222223344445566776666
Q ss_pred HHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Q psy9209 232 ADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 283 (349)
....+........ .....+-..+|..|...|+...-...+..+..
T Consensus 544 ~~li~~L~~~~dp-------~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 544 DDLITKMLASDES-------LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHCSCH-------HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCH-------HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 6555554432111 11223334566677777876544446555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.67 Score=44.86 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=78.5
Q ss_pred hhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---C--------------------cccHHHHHHHHHHHHHhCCH
Q psy9209 104 KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEI---N--------------------NLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 104 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~--------------------~~~~~~~~~l~~~~~~~~~~ 160 (349)
...|.++...+.+|.++...|++++|..+|+++-.- . ...+..|..+..++...+.+
T Consensus 836 ~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~ 915 (1139)
T 4fhn_B 836 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY 915 (1139)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC
T ss_pred hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH
Confidence 345667777799999999999999999999987321 0 01234567788899999999
Q ss_pred HHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDP-----RMLTALGEAFEKQEKISEAMKCYNKS 204 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a 204 (349)
+.+++..+.|++..+.+. ..|.++-..+...|+|++|...+...
T Consensus 916 ~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 916 IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 999999999998754332 25777788889999999998877554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.12 E-value=4 Score=32.98 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=52.5
Q ss_pred cccHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhcc----cccCC--C-------CCCcchHH-HHHHHHHHHHHhCC---
Q psy9209 209 DADGKALFKLAKL-YDKLNETEAAADLFMEFVSKL----DTFAA--P-------PDKTCGFF-AFKYLANHHLKANN--- 270 (349)
Q Consensus 209 ~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~----~~~~~--~-------~~~~~~~~-~~~~l~~~~~~~g~--- 270 (349)
|.....+...+.+ |...++...|...+....+.. |.... + ...+..+. -+..+...-++.+.
T Consensus 183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~l 262 (336)
T 3lpz_A 183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDL 262 (336)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4455555555544 678899999988776655432 32000 0 00111221 12233334445554
Q ss_pred HHHHHHHHHHHHcccC-ChHHHHHHHHHHHHHcCC
Q psy9209 271 LDTAYKCAQKCLQHEE-TAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 271 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 304 (349)
|..-...|+..++.+| ........+|.+|.....
T Consensus 263 F~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 263 FRQLKSKYEANLNELNGIWDTALELIAEMYFGIQR 297 (336)
T ss_dssp HHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence 3333445555566666 778888889999986643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.13 E-value=7.5 Score=31.12 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=22.0
Q ss_pred cccHHHHHHHHH-HHHhcCcHHHHHHHHHHHHhc
Q psy9209 209 DADGKALFKLAK-LYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 209 ~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~ 241 (349)
|...+.+...+. .|...|+...|...+....+.
T Consensus 184 ~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555544444 467889999999988876544
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=87.27 E-value=11 Score=35.73 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=66.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc-c-c------------------
Q psy9209 150 LGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI-G-D------------------ 209 (349)
Q Consensus 150 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~------------------ 209 (349)
+...+...|.++-+ .+.+..-|.++..-+.+|.++...|++++|..+|+++-.- . +
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 44555666766644 3455667788877889999999999999999999987532 0 0
Q ss_pred ---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q psy9209 210 ---ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLD 243 (349)
Q Consensus 210 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 243 (349)
.....|..+..++...+-++-++...+.|+....
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 0123667788888999999999999999997543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=86.27 E-value=1.5e-06 Score=72.45 Aligned_cols=193 Identities=18% Similarity=0.071 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHE 119 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 119 (349)
.+|..+|.+.+..+...+|++.|-++- +|.+ +..+.....+.|.+++-+.+++-+-+... .+.+=..+..+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~------y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~a 125 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSS------YMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFA 125 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCS------SSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC--ChHH------HHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 469999999999999999998887653 4443 12222334456788887777776654321 22222334444
Q ss_pred HHhcCC----------------------------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 120 YMEMKN----------------------------TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 120 ~~~~~~----------------------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
|.+.++ |+.|.-+|.. ..-|..|+.++..+|+|..|++.-+++
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~--------isN~akLAstLV~L~~yq~AVdaArKA- 196 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLGEYQAAVDGARKA- 196 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGG--------SCCCTTTSSSSSSCSGGGSSTTTTTTC-
T ss_pred HHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 444444 4333333321 111334555666666666666555443
Q ss_pred hcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 172 MVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
+++.+|-....+....+.+.-|-.+--..+-... . +-.+...|...|.+++-+..++..+.+...
T Consensus 197 ----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-e---L~elv~~YE~~G~f~ELIsLlEaglglErA------- 261 (624)
T 3lvg_A 197 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-E---LEELINYYQDRGYFEELITMLEAALGLERA------- 261 (624)
T ss_dssp ----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-C---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTC-------
T ss_pred ----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-H---HHHHHHHHHhCCCHHHHHHHHHHHhCCCch-------
Confidence 4455565555555555555444444333332111 0 112233344555555555555555544433
Q ss_pred cchHHHHHHHHHHHHH
Q psy9209 252 TCGFFAFKYLANHHLK 267 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~ 267 (349)
+...+..||.+|.+
T Consensus 262 --HmGmFTELaILYsK 275 (624)
T 3lvg_A 262 --HMGMFTELAILYSK 275 (624)
T ss_dssp --CHHHHHHHHHHHHS
T ss_pred --hHHHHHHHHHHHHh
Confidence 44455555554443
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.80 E-value=16 Score=34.63 Aligned_cols=88 Identities=18% Similarity=0.096 Sum_probs=65.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCC------------------
Q psy9209 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV-RPN------------------ 176 (349)
Q Consensus 116 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~------------------ 176 (349)
+...+...|.++-|.+ .+..-|.++..-+.+|.++...|++++|..+|+++-.- ...
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4556666777765443 44566777777789999999999999999999987532 110
Q ss_pred ----ChHHHHHHHHHHHHhhCHHHHHHHHHHHHcc
Q psy9209 177 ----DPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207 (349)
Q Consensus 177 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 207 (349)
....|.....++...+-++-++.+.+.|++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1135667788888889999999999999875
|
| >3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A | Back alignment and structure |
|---|
Probab=82.81 E-value=2.8 Score=25.06 Aligned_cols=34 Identities=6% Similarity=0.032 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA 75 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 75 (349)
-..+|..+...|++++|..+|-+|+...|.....
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3568999999999999999999998887776554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=80.22 E-value=5.5e-05 Score=63.38 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy9209 109 YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAF 188 (349)
Q Consensus 109 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (349)
.+.+|..+|..+...++..+|++.|-++ +++..+.....+..+.|++++=+.++..+.+. -..+.+-..+..+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHH
Confidence 4667888888888888888888777553 23333445555566777888777777766554 33444445566666
Q ss_pred HHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 189 EKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 189 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
.+.++..+-.+++ ..|+. .-....|.-++..|.|+.|.-.|
T Consensus 127 Ak~~rL~elEefl-----~~~N~-A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 127 AKTNRLAELEEFI-----NGPNN-AHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HTSCSSSTTTSTT-----SCCSS-SCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HhhCcHHHHHHHH-----cCCCc-ccHHHHHHHHHHccCHHHHHHHH
Confidence 6666644322211 12222 12234555566666666555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 349 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-18 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-18 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-17 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 5e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-10 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-10 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-09 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 8e-06 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 4e-08 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 6e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.003 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-04 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 7e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 8e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 6e-04 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 5e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 6e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 6e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.0 bits (201), Expect = 6e-18
Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 3/195 (1%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A+ L + A +K + + +A L ++ ++ + + +AV +
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD---RAVAAYL 227
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
RAL L+PN+ V L Y E + AI YR+AIE+ A+ L +
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
Y A + P L L +Q I EA++ Y K+ + A LA
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347
Query: 221 LYDKLNETEAAADLF 235
+ + + + A +
Sbjct: 348 VLQQQGKLQEALMHY 362
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (199), Expect = 8e-18
Identities = 32/186 (17%), Positives = 65/186 (34%), Gaps = 3/186 (1%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
A+ L N +A D A + L L + ++ + A+ ++
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID---LAIDTYR 261
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
RA++L P++ + L + E + A CY A+ + + L
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ Y++A V P + L ++Q K+ EA+ Y ++ I A +
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Query: 221 LYDKLN 226
++
Sbjct: 382 TLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (197), Expect = 2e-17
Identities = 49/267 (18%), Positives = 102/267 (38%), Gaps = 9/267 (3%)
Query: 37 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAV 96
+ ++ L + L+ ET ++ A+
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI 156
+F++A+ L+PN+L + LG+ E + + A+ Y +A+ ++ L Y
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 157 LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF 216
L + Y++A ++P+ P L A +++ ++EA CYN + + +L
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 217 KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK 276
LA + + E A L+ + + FAA A LA+ + L A
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALM 360
Query: 277 CAQKCLQHEETAEEAKSLLRSIAQKRQ 303
++ ++ T +A S + + ++ Q
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 2e-10
Identities = 49/310 (15%), Positives = 101/310 (32%), Gaps = 46/310 (14%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
LA+ +A + + A + + + E LL SI + + + ++ + A+K
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD---RSAHFSTLAIK 61
Query: 105 LNPNYLGVWTLLGHEY----------------------------------MEMKNTNAAI 130
NP ++ LG+ Y + + A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 131 QCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
Q Y A++ N Y LG + L Y +A +PN + LG F
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 191 QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250
Q +I A+ + K+ + A L + + + A ++ +S
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------- 232
Query: 251 KTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQ 310
LA + + +D A ++ ++ + +A L + +++ +
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 311 PMECAVVLDP 320
A+ L P
Sbjct: 293 CYNTALRLCP 302
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 19/95 (20%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 31 APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE 90
A + LAN + N++ A + +K L+ A S L S+ Q++ +
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN 125
+A+++++ A++++P + ++ +G+ EM++
Sbjct: 357 ---EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 2e-11
Identities = 39/279 (13%), Positives = 73/279 (26%), Gaps = 7/279 (2%)
Query: 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYF 99
+ + + S L I+ K+ V
Sbjct: 87 VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS---AIVKPQ 143
Query: 100 QRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159
+ + LG T+ A YR A ++ + + + L
Sbjct: 144 SSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD 201
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
++YY ++ V+ P T L +A K + + +K A K +
Sbjct: 202 HLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY 261
Query: 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQ 279
+ L +F L A + HHL+ + +T
Sbjct: 262 LSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYS 321
Query: 280 KCLQHEETAEEA--KSLLRSIAQKRQPDESSSQPMECAV 316
+ Q T A S L + + +ES +
Sbjct: 322 QDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP 360
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (148), Expect = 5e-11
Identities = 29/257 (11%), Positives = 61/257 (23%), Gaps = 49/257 (19%)
Query: 92 SSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN-------NLDY 144
S Q+ Y ++A L + + + Y++ + + ++
Sbjct: 2 SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ 58
Query: 145 RAW----YGLGQTYE-----------------ILRLPYYGLYYYKQAHM-------VRPN 176
W T + + +Y Q V
Sbjct: 59 DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFM 236
+ LG KQ S +K + S + L L + N+T A +
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYR 176
Query: 237 EFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 296
+ + + LA + T + + + A + L+
Sbjct: 177 HAAQLVPSNGQ---------PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227
Query: 297 SIAQKRQPDESSSQPME 313
K +
Sbjct: 228 KALSKALESRDEVKTKW 244
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 58.5 bits (141), Expect = 2e-10
Identities = 10/127 (7%), Positives = 30/127 (23%), Gaps = 1/127 (0%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
QA+ A+K +P + + + A + Q+I++ L
Sbjct: 14 QALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 73
Query: 154 YE-ILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG 212
+ + + + + + + + + G
Sbjct: 74 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133
Query: 213 KALFKLA 219
+
Sbjct: 134 FLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 48.1 bits (114), Expect = 5e-07
Identities = 12/122 (9%), Positives = 36/122 (29%), Gaps = 1/122 (0%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176
+ A++ +AI+ + D + I Q+ + P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIG-DADGKALFKLAKLYDKLNETEAAADLF 235
+ L + + + + ++ +G + + L + E ++L
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 236 ME 237
++
Sbjct: 123 LQ 124
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.1 bits (139), Expect = 3e-10
Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 13/195 (6%)
Query: 57 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVW--- 113
+ + K L+ E+ + +S +++ QKRQ E + + L NP++ +W
Sbjct: 10 SEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCR 69
Query: 114 -------TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG--- 163
A + + +N Y W+ L P +
Sbjct: 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 164 LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223
+ N A + +E + + ++ + + L
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189
Query: 224 KLNETEAAADLFMEF 238
+L+ +
Sbjct: 190 QLHPQPDSGPQGRLP 204
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.7 bits (112), Expect = 1e-06
Identities = 14/126 (11%), Positives = 29/126 (23%)
Query: 31 APPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE 90
+ P A D + A + E +K +
Sbjct: 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ 256
Query: 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL 150
S ++ Q N L LL + +Q + ++ + L
Sbjct: 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316
Query: 151 GQTYEI 156
+ +
Sbjct: 317 RSKFLL 322
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 17/157 (10%), Positives = 41/157 (26%), Gaps = 7/157 (4%)
Query: 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQ 100
++ Y + + + + + E Q + ++
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ-------SAWFYH 232
Query: 101 RALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160
R L L L + +++ + + ++ N L + + L
Sbjct: 233 RWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 292
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
L Y+ V P L L F + + +
Sbjct: 293 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 329
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.8 bits (128), Expect = 4e-09
Identities = 22/192 (11%), Positives = 58/192 (30%), Gaps = 4/192 (2%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
G+ + A CY +AI N L + Y ++ P L ++A +
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235
+ LG+ + E EA+ ++ ++ ++ + + +
Sbjct: 70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129
Query: 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL----QHEETAEEA 291
+ + + + + L + + +H++ +
Sbjct: 130 ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADM 189
Query: 292 KSLLRSIAQKRQ 303
L + +KR+
Sbjct: 190 DELFSQVDEKRK 201
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.8 bits (102), Expect = 8e-06
Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 2/144 (1%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
+A + RA+ NP +T Y++M+ A+ R+A+E++ +A + LGQ
Sbjct: 22 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGD--AD 211
+ + ++A+ + + + K +
Sbjct: 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHS 141
Query: 212 GKALFKLAKLYDKLNETEAAADLF 235
A+ +L E + +
Sbjct: 142 YLTRLIAAERERELEECQRNHEGH 165
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 4e-08
Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 8/223 (3%)
Query: 74 EAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM-KNTNAAIQC 132
+ R++ Q+ DE S +A + A++LN VW + K+ + +
Sbjct: 44 DVYDYFRAVLQR---DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY 100
Query: 133 YRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192
IE +Y+ W+ E LR P L + + ++ +
Sbjct: 101 ITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK 160
Query: 193 KISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKT 252
++ ++ + + + A L E L+ P
Sbjct: 161 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 220
Query: 253 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLL 295
+ K + L+ L + L + + +
Sbjct: 221 SAWNYLKGI----LQDRGLSKYPNLLNQLLDLQPSHSSPYLIA 259
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 1e-07
Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 1/141 (0%)
Query: 102 ALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161
+ + + V+ + + A + R AIE+N +Y W+ + L+
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 162 YG-LYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ + Y +P + ++ E S+ ++ + A
Sbjct: 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154
Query: 221 LYDKLNETEAAADLFMEFVSK 241
+ + + + + +
Sbjct: 155 VIQEFKLWDNELQYVDQLLKE 175
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 7e-07
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGL-------GQTYEILRLPYYGLYYYK 168
LG++ + K+ + A++ Y +A E++ + G + L + +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 169 QAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE 227
+ + +G ++ K+EK +A+ YNKS A L K + L E
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE-HRTPDVLKKCQQAEKILKE 127
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 6e-06
Identities = 24/127 (18%), Positives = 42/127 (33%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
AVL F+ A++ +P ++ W LG E + AI R+ +E+ + A L
Sbjct: 36 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 95
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG 212
++ L + P ++T E + +
Sbjct: 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 155
Query: 213 KALFKLA 219
K LF A
Sbjct: 156 KELFLAA 162
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 8/177 (4%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
G ++ + A+ + A++ + AW LG T + ++ ++P
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADL- 234
++ L AL +F + +A + A + + + L
Sbjct: 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144
Query: 235 -------FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH 284
F+E + L + D A C L
Sbjct: 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 4/175 (2%)
Query: 19 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSL 78
F+E + L + D A C L +
Sbjct: 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 211
Query: 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIE 138
L + E + ++RAL+L P Y+ LG + + A++ + +A+
Sbjct: 212 LGATLANGNQSEEAVA---AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268
Query: 139 INNLDYRAWYGLGQTYEILRLPY-YGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192
+ G E + L Q+ D R L+ L F +
Sbjct: 269 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ 323
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.001
Identities = 33/234 (14%), Positives = 71/234 (30%), Gaps = 6/234 (2%)
Query: 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYK 60
+ ++ +L + + L A + L+
Sbjct: 65 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 124
Query: 61 CAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTL--LGH 118
+ +K +L S+ E F A++L+P + LG
Sbjct: 125 TPAEEGAGGAGLGPSKRILGSLLSDSLFLE----VKELFLAAVRLDPTSIDPDVQCGLGV 180
Query: 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP 178
+ + A+ C+ A+ + DY W LG T + Y++A ++P
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240
Query: 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232
R LG + EA++ + ++ + + + + + T A
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 294
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-05
Identities = 16/109 (14%), Positives = 42/109 (38%)
Query: 116 LGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175
G++ + + N + A+QCY +AI+++ ++ + Y + ++P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224
+ + + A E + EA + Y + + + L + +
Sbjct: 69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.003
Identities = 13/97 (13%), Positives = 36/97 (37%)
Query: 94 QAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQT 153
A+ + A+KL+P+ +++ Y + + A + + +++ + +
Sbjct: 21 DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 80
Query: 154 YEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190
E L Y++ N+P++ L +
Sbjct: 81 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 2e-05
Identities = 9/105 (8%), Positives = 21/105 (20%), Gaps = 5/105 (4%)
Query: 94 QAVLYFQRALKLNPNYLGV---WTLLGHEYMEMKNTNAAIQCYRQAIEI--NNLDYRAWY 148
+ FQ + + I + + +
Sbjct: 17 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF 76
Query: 149 GLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK 193
L L+ L Y + P + + + +K
Sbjct: 77 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 1e-04
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 183 ALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKL 242
A+ E + + K + +A G F+ Y D + + L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFE----YAWCLVRTRYNDDIRKGIVLL 59
Query: 243 DTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR 302
+ K YLA + + + A K + LQ E +AK L R I +
Sbjct: 60 EELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119
Query: 303 QPD 305
+ D
Sbjct: 120 KKD 122
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 4e-04
Identities = 10/113 (8%), Positives = 32/113 (28%), Gaps = 2/113 (1%)
Query: 45 LANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALK 104
+ N + +L K Q ++ + + + ++ + ++ + L
Sbjct: 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP 64
Query: 105 L--NPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE 155
L +K A++ R ++ + +A +
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 7e-05
Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 8/244 (3%)
Query: 73 EEAKSLLRSIAQKRQPDESSSQAVLYFQRALK-LNPNYLGVWTLLGHEYMEMKNTNAAIQ 131
E++ LL S +A ++RA+ L + ++
Sbjct: 61 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120
Query: 132 CYRQAIEINNLDYR-AWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG-EAFE 189
Y + + I ++D + + G +K+A + +
Sbjct: 121 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180
Query: 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPP 249
+ S A K + + + LNE LF ++ + PP
Sbjct: 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---SLPP 237
Query: 250 DKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS 309
+K+ + +L + K ++ E K + + + D
Sbjct: 238 EKSGEI--WARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPC 295
Query: 310 QPME 313
E
Sbjct: 296 SASE 299
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 8e-05
Identities = 25/203 (12%), Positives = 42/203 (20%), Gaps = 4/203 (1%)
Query: 82 IAQKRQPDESSSQAVLYFQRALK----LNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAI 137
+A QP + ++ L + + G Y + A + QA+
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 138 EINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197
I + LG + + P G A + A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 198 MKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFA 257
D L KL+E +A L F
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 258 FKYLANHHLKANNLDTAYKCAQK 280
+ A+
Sbjct: 185 ISEQTLMERLKADATDNTSLAEH 207
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 3/115 (2%)
Query: 37 CGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAV 96
+ YLA L K + E+ +
Sbjct: 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV---EFYLGNISEQTLMERLK 195
Query: 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLG 151
L + LG Y+ + + ++A ++ A+ N ++
Sbjct: 196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 250
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 27/143 (18%), Positives = 58/143 (40%), Gaps = 6/143 (4%)
Query: 70 ETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAA 129
+ AEE K+ + + + A+ ++ +A++LNP+ + Y+ + A
Sbjct: 8 KRAEELKTQANDYFKAKDYEN----AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 63
Query: 130 IQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189
+ +AIE++ + +Y + L L Y+ V+P+D E +
Sbjct: 64 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123
Query: 190 --KQEKISEAMKCYNKSRAIGDA 210
KQ+ A+ R++ D+
Sbjct: 124 IVKQKAFERAIAGDEHKRSVVDS 146
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 16/132 (12%), Positives = 47/132 (35%), Gaps = 16/132 (12%)
Query: 116 LGHEYMEMKNTNAAIQCYRQA----------------IEINNLDYRAWYGLGQTYEILRL 159
+G+ + + +N AI+ Y + ++ + +G +
Sbjct: 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92
Query: 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLA 219
+ +A + P++ + L + ++ ++ +A+ K++ I D +L
Sbjct: 93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152
Query: 220 KLYDKLNETEAA 231
K+ K+ +
Sbjct: 153 KVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.1 bits (87), Expect = 5e-04
Identities = 24/107 (22%), Positives = 45/107 (42%)
Query: 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQ 152
S+A KL P L +G ++M + A+ +A+EI+ + +A Y Q
Sbjct: 60 SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 119
Query: 153 TYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMK 199
++ L+ L K+A + P D + L + +K + + K
Sbjct: 120 GWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 166
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 15/132 (11%), Positives = 40/132 (30%), Gaps = 16/132 (12%)
Query: 104 KLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI------- 156
+ + + +G Y +KN A + + ++I + A++ G Y
Sbjct: 30 AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 157 ---------LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAI 207
+ Y + +L + + K+E+ +A + + ++
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 208 GDADGKALFKLA 219
+ A
Sbjct: 150 KSEPRHSKIDKA 161
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 5e-04
Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 17/231 (7%)
Query: 13 EAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 72
AAD + ++ + + F + N N + + +
Sbjct: 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120
Query: 73 EEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQC 132
E +L + + + + + A
Sbjct: 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180
Query: 133 YRQAIEINNLDYRAWYGLGQTYEILRLPYYGL-------YYYKQAHMVRPN-----DPRM 180
Y + I+ + + + + L + L ++ PN +
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240
Query: 181 LTALGEAFEKQ--EKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETE 229
L +L +A + E++SE K ++ + D + L K+ + + + E
Sbjct: 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRL---DKWKITILNKIKESIQQQE 288
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 6e-04
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 16/143 (11%)
Query: 116 LGHEYMEMKNTNAAIQCYRQA---------------IEINNLDYRAWYGLGQTYEILRLP 160
G Y + A+ Y++ + L + L + L+
Sbjct: 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 78
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ +A + N+ + L+ GEA A + K + + A +LA
Sbjct: 79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138
Query: 221 LYDKLNE-TEAAADLFMEFVSKL 242
++ L+ +L
Sbjct: 139 CQQRIRRQLAREKKLYANMFERL 161
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 37.6 bits (86), Expect = 6e-04
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 16/142 (11%)
Query: 117 GHEYMEMKNTNAAIQCYRQAIEINNLDYR---------------AWYGLGQTYEILRLPY 161
G Y + A+ Y + + ++Y A+ L Y LR
Sbjct: 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81
Query: 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKL 221
+ +A + + + L GEA + A + K + + A ++
Sbjct: 82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141
Query: 222 YDKLNE-TEAAADLFMEFVSKL 242
K E E + K
Sbjct: 142 QKKAKEHNERDRRTYANMFKKF 163
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 36.5 bits (83), Expect = 0.002
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 117 GHEYMEMKNTNAAIQCYRQ----------------AIEINNLDYRAWYGLGQTYEILRLP 160
G+E+ + N AI Y++ + N++ L Y +
Sbjct: 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 83
Query: 161 YYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAK 220
+ + + + N+ + L LG A + EA + K+ ++ +
Sbjct: 84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143
Query: 221 LYDKLNE 227
+KL E
Sbjct: 144 CVNKLKE 150
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 100.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.91 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.84 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.84 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.76 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.7 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.67 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.65 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.65 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.64 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.62 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.61 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.61 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.6 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.37 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.31 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.3 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.15 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.08 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.62 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.61 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.58 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.37 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.06 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 87.1 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 86.61 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 86.0 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 80.11 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-40 Score=277.46 Aligned_cols=307 Identities=19% Similarity=0.198 Sum_probs=282.5
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 81 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 81 (349)
.|..+.+.|++++|+..|+++++..|... .++..+|.++...|++++|+..|+++++.+|+++.++..++.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 75 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNT---------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 37788999999999999999996544332 679999999999999999999999999999999988666554
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhCc------------------------------------------------------
Q psy9209 82 IAQKRQPDESSSQAVLYFQRALKLNP------------------------------------------------------ 107 (349)
Q Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~~------------------------------------------------------ 107 (349)
+ +...|++++|+..+..+...+|
T Consensus 76 ~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
T d1w3ba_ 76 V---YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp H---HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHH
T ss_pred H---hhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4 5556999999998888766544
Q ss_pred --------------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy9209 108 --------------NYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMV 173 (349)
Q Consensus 108 --------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 173 (349)
+.+.++..+|.++...|++++|...++++++.+|+++.++..+|.++...|++++|+..++++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 345667888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 174 RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
.|..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------- 303 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--------- 303 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT---------
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccccC
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRSSK 329 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 329 (349)
....+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++.++
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 379 (388)
T d1w3ba_ 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998766543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-36 Score=254.89 Aligned_cols=285 Identities=18% Similarity=0.196 Sum_probs=261.6
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHH-----
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK----- 76 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~----- 76 (349)
.|.+|...|++++|+..|+++++..|... .++..+|.++...|++++|+..+..++...|......
T Consensus 39 la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1w3ba_ 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLA---------EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHhhhhccccccccccccccccccccccccccccc
Confidence 57889999999999999999996443322 6899999999999999999999999887655432211
Q ss_pred ------------------------------------------------------------HHHHHHHHhcCCCcchHHHH
Q psy9209 77 ------------------------------------------------------------SLLRSIAQKRQPDESSSQAV 96 (349)
Q Consensus 77 ------------------------------------------------------------~~l~~~~~~~~~~~~~~~A~ 96 (349)
.....++..+...|++++|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 189 (388)
T d1w3ba_ 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence 11223345566789999999
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 97 LYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
..++++++.+|+++.++..+|.++...|++++|+..++++....|.....+..+|.++...|++++|+..|+++++++|+
T Consensus 190 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 269 (388)
T d1w3ba_ 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHH
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFF 256 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|+..|+++++..|+ .+.
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~ 340 (388)
T d1w3ba_ 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---------FAA 340 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT---------CHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCC
Q psy9209 257 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQP 304 (349)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 304 (349)
++..+|.++...|++++|+.+|+++++++|+++.++..+|.++..+||
T Consensus 341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.3e-33 Score=227.50 Aligned_cols=243 Identities=14% Similarity=0.084 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM 121 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 121 (349)
.+..|..++..|++++|+..|+++++.+|+++.++..++.+ +...|++++|+..|.++++++|+++..+..+|.++.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT---QAENEQELLAISALRRCLELKPDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence 45677777777777777777777777777776665554433 444577777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--hHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRA---------------WYGLGQTYEILRLPYYGLYYYKQAHMVRPND--PRMLTAL 184 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 184 (349)
..|++++|+..+++++...|..... .......+...+.+.+|...+.+++..+|+. +.++..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 7777777777777777766653211 1111222334455666666666666666653 3456666
Q ss_pred HHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH
Q psy9209 185 GEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH 264 (349)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (349)
|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+ .+.++..+|.+
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~ 249 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---------YIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc---------cHHHHHHHHHH
Confidence 666666677777777777776666666666666777777777777777777777666666 56666667777
Q ss_pred HHHhCCHHHHHHHHHHHHcccCChHHHHHHHH
Q psy9209 265 HLKANNLDTAYKCAQKCLQHEETAEEAKSLLR 296 (349)
Q Consensus 265 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 296 (349)
+...|++++|+..|++++++.|++...+..++
T Consensus 250 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 281 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNMQRKSRGPRGEGG 281 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcChhhhhhhH
Confidence 77777777777777777666666655444433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-31 Score=220.39 Aligned_cols=238 Identities=15% Similarity=0.167 Sum_probs=214.9
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCH
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLP 160 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 160 (349)
..|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++...|++
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 44566667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChH---------------HHHHHHHHHHHhhCHHHHHHHHHHHHccccc--cHHHHHHHHHHHH
Q psy9209 161 YYGLYYYKQAHMVRPNDPR---------------MLTALGEAFEKQEKISEAMKCYNKSRAIGDA--DGKALFKLAKLYD 223 (349)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~ 223 (349)
++|+..+++++...|.... ........+...+.+.+|+..+.+++..+|. ++.++..+|.++.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999999999999887532 1223344556778899999999999999886 4678899999999
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcC
Q psy9209 224 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ 303 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 303 (349)
..|++++|+..+++++...|+ .+.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|
T Consensus 184 ~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVRPN---------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 254 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhcccccccccccc---------cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCC
Confidence 999999999999999999998 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHhhhcCCCCCCccc
Q psy9209 304 PDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 304 ~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
++++|+..|+++++++|++.....
T Consensus 255 ~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 255 AHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp CHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHHHhCCcChhhhh
Confidence 999999999999999999876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.4e-28 Score=196.89 Aligned_cols=218 Identities=13% Similarity=0.119 Sum_probs=104.7
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKN-TNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYY 167 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 167 (349)
.+.+++|+..++++++++|++..+|..+|.++...|. +++|+..++++++.+|++..+|..+|.++..+|++++|+..+
T Consensus 56 ~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~ 135 (315)
T d2h6fa1 56 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 135 (315)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHH
Confidence 3444555555555555555555555555555444432 455555555555555555555555555555555555555555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhc
Q psy9209 168 KQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE------TEAAADLFMEFVSK 241 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~ 241 (349)
+++++++|.+..+|..+|.++...|++++|+.+++++++++|.+..+|..+|.++...+. +++|+..+.+++..
T Consensus 136 ~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~ 215 (315)
T d2h6fa1 136 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 215 (315)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555555555554444333 34455555555555
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC--hHHHHHHHHHHHHH--cCCCCCchhHHHHhh
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET--AEEAKSLLRSIAQK--RQPDESSSQPMECAV 316 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~ 316 (349)
.|. +..+|..++.++...| ..++...+++++++.|+ ++.+...++.++.. .++.+.+...+++++
T Consensus 216 ~P~---------~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~ 284 (315)
T d2h6fa1 216 VPH---------NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 284 (315)
T ss_dssp STT---------CHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred CCC---------chHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 554 4455555544433322 34444444444444432 22333333333322 244444444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.9e-27 Score=191.98 Aligned_cols=251 Identities=10% Similarity=0.113 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
..++..+|.++...+.+++|+..++++++++|++..+|...+.+.... .+++++|+..++++++.+|++..+|..+|.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l--~~~~~eal~~~~~al~~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHEEMNYITAIIEEQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence 467889999999999999999999999999999999988887765543 246999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC-----
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK----- 193 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 193 (349)
++..+|++++|+..++++++++|++..+|.++|.++...|++++|+..++++++++|.+..+|.++|.++...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred -HHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHh--CC
Q psy9209 194 -ISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKA--NN 270 (349)
Q Consensus 194 -~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~ 270 (349)
+++|+..+.++++.+|.+..+|..++.++...| .+++...+++++.+.|.. ....++..++.++... ++
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~-------~~~~~~~~l~~~y~~~~~~~ 272 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH-------SSPYLIAFLVDIYEDMLENQ 272 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC-------CCHHHHHHHHHHHHHHHHTT
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCc-------CCHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999876655 588899999999988762 1456667777777543 44
Q ss_pred HHHHHHHHHHHH--------cccCChHHHHHHHHHHH
Q psy9209 271 LDTAYKCAQKCL--------QHEETAEEAKSLLRSIA 299 (349)
Q Consensus 271 ~~~A~~~~~~a~--------~~~~~~~~~~~~l~~~~ 299 (349)
.+.+...+++++ +.+|-....|..++...
T Consensus 273 ~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 273 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 309 (315)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444444444443 34565666666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=3.7e-30 Score=212.03 Aligned_cols=264 Identities=8% Similarity=0.031 Sum_probs=222.6
Q ss_pred hcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhc
Q psy9209 51 KANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKR-------QPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEM 123 (349)
Q Consensus 51 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 123 (349)
..+..++|+.+++++++.+|++..+|...+.+...+ ...|++++|+.+++++++.+|+++.+|..+|.++...
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 334458999999999999999998876655554333 2245688999999999999999999999999998887
Q ss_pred CC--hHHHHHHHHHHHHhCcccHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHH
Q psy9209 124 KN--TNAAIQCYRQAIEINNLDYRAW-YGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKC 200 (349)
Q Consensus 124 ~~--~~~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (349)
++ +++|+..++++++.+|.+..++ ...|.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|+..
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 65 7899999999999999988876 46778888999999999999999999999999999999999999999999888
Q ss_pred HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 201 YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 201 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
+++++...|.....+.. +...+..+++...+.+++...|. ....+..+|.++...|++.+|+..+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~----~~~l~~~~~a~~~~~~~l~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 201 GRLPENVLLKELELVQN----AFFTDPNDQSAWFYHRWLLGRAE---------PLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CSSCHHHHHHHHHHHHH----HHHHCSSCSHHHHHHHHHHSCCC---------CSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhHHHHHHHHHH----HHHhcchhHHHHHHHHHHHhCcc---------hhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888887766554433 45567777888899999888887 566677788888888999999999999
Q ss_pred HHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCCCCCccc
Q psy9209 281 CLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPVPPSTRS 327 (349)
Q Consensus 281 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 327 (349)
++..+|.+..++..+|.++...|++++|+.+|+++++++|.....+.
T Consensus 268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 99999999999999999999999999999999999999997655443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.8e-26 Score=181.83 Aligned_cols=225 Identities=16% Similarity=0.049 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHH
Q psy9209 53 NNLDTAYKCAQKCLQHEE-TAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQ 131 (349)
Q Consensus 53 ~~~~~A~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 131 (349)
++.+.|+..+++++...+ .++.....+..+|.+|...|++++|+..|+++++++|+++.++..+|.++..+|++++|+.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 344555555666554311 1111122233444555555666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc
Q psy9209 132 CYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD 211 (349)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 211 (349)
.|+++++++|+++.++.++|.++...|++++|+..++++++..|.+......++.++...+..+.+...........+..
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 66666666666666666666666666666666666666666666666555555555555555444444444433333322
Q ss_pred HHHHHHHHHHH----HhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 212 GKALFKLAKLY----DKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 212 ~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
... .+...+ ...+..+.+...+.......|. ...+++.+|.++...|++++|+.+|++++..+|+
T Consensus 173 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 173 WGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEH---------LSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp THH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 111 111111 1122233344444444444444 4556666666666666666666666666666665
Q ss_pred h
Q psy9209 288 A 288 (349)
Q Consensus 288 ~ 288 (349)
+
T Consensus 242 ~ 242 (259)
T d1xnfa_ 242 N 242 (259)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=4.1e-27 Score=193.71 Aligned_cols=268 Identities=9% Similarity=-0.043 Sum_probs=231.1
Q ss_pred cHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHh----------cCCHHHHHHHHHHHhhhhhchHHHHHHHH
Q psy9209 11 ETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK----------ANNLDTAYKCAQKCLQHEETAEEAKSLLR 80 (349)
Q Consensus 11 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~l~~~~~~~~~~~~l~ 80 (349)
..++|+.+++++++..|... .+|..++.++.. .|++++|+.++++++..+|++..++..++
T Consensus 44 ~~~~al~~~~~~l~~~P~~~---------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~ 114 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFA---------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 114 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhh
Confidence 35899999999995443332 456665555443 44588999999999999999999987666
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHhhCcccHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC
Q psy9209 81 SIAQKRQPDESSSQAVLYFQRALKLNPNYLGVW-TLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRL 159 (349)
Q Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 159 (349)
.+.. ....+++++|+..+++++..+|++..++ ...|.++...+.+++|+..++++++.+|.+..+|..+|.++...|+
T Consensus 115 ~~~~-~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 115 WLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHH-HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 5533 3445679999999999999999988876 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy9209 160 PYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFV 239 (349)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 239 (349)
+++|...+.+++...|..... ...+...+..+++...+.+++...|.....+..+|.++...|++.+|+..+.+++
T Consensus 194 ~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 194 QPDSGPQGRLPENVLLKELEL----VQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CCCSSSCCSSCHHHHHHHHHH----HHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHhHHHHHHH----HHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999888888877665443 3445667888899999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH
Q psy9209 240 SKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 301 (349)
..+|. ...++..+|.++...|++++|+.+|+++++++|.+...|..++..+..
T Consensus 270 ~~~p~---------~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 270 PENKW---------CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp TTCHH---------HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hhCch---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 99998 899999999999999999999999999999999999999888777653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=8e-25 Score=173.35 Aligned_cols=231 Identities=14% Similarity=-0.040 Sum_probs=188.8
Q ss_pred cCCCcchHHHHHHHHHHHhhC----cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLN----PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPY 161 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (349)
+....+.+.|+..+++++... +....+++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|+++
T Consensus 9 ~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 88 (259)
T d1xnfa_ 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 88 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHH
Confidence 344567778888888888653 3456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q psy9209 162 YGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSK 241 (349)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 241 (349)
+|+..|+++++++|+++.++..+|.++..+|++++|+..++++++.+|.+......++.++...+..+.+..........
T Consensus 89 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 89 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999888888888888888776666666655554
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 242 LDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
.+. ..........++. ....+..+.+...+.......|....++..+|.++..+|++++|+.+|++++..+|+
T Consensus 169 ~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 169 DKE------QWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CCC------STHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred chh------hhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 443 1111111111221 122345666777777777778888899999999999999999999999999999998
Q ss_pred CC
Q psy9209 322 PP 323 (349)
Q Consensus 322 ~~ 323 (349)
+.
T Consensus 242 ~~ 243 (259)
T d1xnfa_ 242 NF 243 (259)
T ss_dssp TC
T ss_pred CH
Confidence 74
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2e-22 Score=166.84 Aligned_cols=304 Identities=12% Similarity=-0.082 Sum_probs=240.7
Q ss_pred ChhhhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhch---HHHHH
Q psy9209 1 MRNKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA---EEAKS 77 (349)
Q Consensus 1 l~a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~ 77 (349)
++|+++...|++++|+..++++++..+.. +......++..+|.++...|++++|+..+++++...+.. .....
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~----~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPG----WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTT----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCC----CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 47899999999999999999999654332 122233578899999999999999999999999875543 33344
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhhCcc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc-----cH
Q psy9209 78 LLRSIAQKRQPDESSSQAVLYFQRALKLNPN--------YLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL-----DY 144 (349)
Q Consensus 78 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~ 144 (349)
.+..++..+...|++..+...+.+++.+.+. ....+..+|.++...|+++.+...+.+++...+. ..
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 4566677777789999999999999875432 2356778999999999999999999999987543 35
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc----cHH
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND-------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA----DGK 213 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~ 213 (349)
.++...+..+...+++.++...+.++....+.. ..++..++.++...|++++|...+++++...|. ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 677888999999999999999999888764322 346778899999999999999999999988554 355
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh-----
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA----- 288 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----- 288 (349)
.+..+|.++...|++++|...+++++..... ....+....++..+|.++..+|++++|+..+++++++.+..
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~ 329 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 329 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHH
Confidence 6788999999999999999999999876554 33445578899999999999999999999999999875421
Q ss_pred ----HHHHHHHHHHHHHcCCCCCchhH
Q psy9209 289 ----EEAKSLLRSIAQKRQPDESSSQP 311 (349)
Q Consensus 289 ----~~~~~~l~~~~~~~~~~~~A~~~ 311 (349)
......+...+...++.+++...
T Consensus 330 ~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 330 FVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 22233334445556777766544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.5e-22 Score=165.35 Aligned_cols=277 Identities=10% Similarity=-0.059 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHhhCccc------HH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEA--KSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNY------LG 111 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 111 (349)
......|.++...|++++|+..+++++...|++... ...+..++.++...|++++|+..|++++...+.. ..
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 456778999999999999999999999988875432 2235556677777899999999999999875432 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcc--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----h
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNL--------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPND-----P 178 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~ 178 (349)
++..++.++...|++..|...+.+++.+.+. ....+..+|.++...|+++.+...+.+++...+.. .
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 6788999999999999999999999886432 34567789999999999999999999999876543 3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHcccc-------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCC
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGD-------ADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDK 251 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 251 (349)
..+...+.++...+++.++...+.++....+ ....++..++.++...|++++|...+++++...+. ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 247 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-----NN 247 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT-----TC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc-----cc
Confidence 5677889999999999999999998877532 23556788899999999999999999999887765 23
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc------cCChHHHHHHHHHHHHHcCCCCCchhHHHHhhhcCCC
Q psy9209 252 TCGFFAFKYLANHHLKANNLDTAYKCAQKCLQH------EETAEEAKSLLRSIAQKRQPDESSSQPMECAVVLDPV 321 (349)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 321 (349)
+.....+..+|.++...|++++|...+++++.. .|....++..+|.++..+|++++|++.+++++++.+.
T Consensus 248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 445677889999999999999999999999743 4667788999999999999999999999999987654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=6.9e-20 Score=146.82 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=163.9
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhCCHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEIN------NLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
+++++|..+|.++ |.+|...|++++|+++|.+++++. +....++.++|.+|...|++++|
T Consensus 31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4567777666654 788999999999999999999873 23357889999999999999999
Q ss_pred HHHHHHHHhcCCCC------hHHHHHHHHHHHH-hhCHHHHHHHHHHHHccccc------cHHHHHHHHHHHHhcCcHHH
Q psy9209 164 LYYYKQAHMVRPND------PRMLTALGEAFEK-QEKISEAMKCYNKSRAIGDA------DGKALFKLAKLYDKLNETEA 230 (349)
Q Consensus 164 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~ 230 (349)
+.++++++.+.+.. ..++..+|.++.. .|++++|+.+|++++++.+. ...++..+|.++..+|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 99999999875544 3677888988865 69999999999999887432 35678899999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHH-----HHHHHHHHH--cC
Q psy9209 231 AADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAK-----SLLRSIAQK--RQ 303 (349)
Q Consensus 231 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~l~~~~~~--~~ 303 (349)
|+..|++++...+.. ..........+...|.++...|++..|...++++.+++|.....+ ..+..++.. .+
T Consensus 177 A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGN--RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHTTSSC--TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCccc--hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 999999999988763 112333456778899999999999999999999999988654432 333344433 23
Q ss_pred CCCCchhHHHHhhhcCC
Q psy9209 304 PDESSSQPMECAVVLDP 320 (349)
Q Consensus 304 ~~~~A~~~~~~a~~~~p 320 (349)
.+++|+..|+++.+++|
T Consensus 255 ~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 255 QLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp THHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHhhcCH
Confidence 45678888877777665
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=1e-18 Score=141.15 Aligned_cols=223 Identities=10% Similarity=-0.007 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHH--------------hcCChHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHh
Q psy9209 93 SQAVLYFQRALKLNPNYLGVWTLLGHEYM--------------EMKNTNAAIQCYRQAIEI-NNLDYRAWYGLGQTYEIL 157 (349)
Q Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~--------------~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~ 157 (349)
..+...|++++...|.++..|...+..+. ..+..++|...|+++++. .|.+...|..++.++...
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 33445555555555555555555444332 223346777777777763 666777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHH-hcCcHHHHHHHH
Q psy9209 158 RLPYYGLYYYKQAHMVRPNDP-RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD-KLNETEAAADLF 235 (349)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~ 235 (349)
|+++.|...|++++...|.+. .+|..++......|+++.|...|+++++..|.....+...+.... ..|+.+.|...|
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~ 192 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 888888888888777777664 367777777777788888888888888777777777777776543 456777788888
Q ss_pred HHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh----HHHHHHHHHHHHHcCCCCCchhH
Q psy9209 236 MEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA----EEAKSLLRSIAQKRQPDESSSQP 311 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 311 (349)
++++...|. .+..|...+..+...|+++.|..+|++++...|.+ ...|..........|+.+.+...
T Consensus 193 e~~l~~~p~---------~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 193 ELGLKKYGD---------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhhhh---------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888877777 67777777777778888888888888877765432 34566666666777888888888
Q ss_pred HHHhhhcCCCCCC
Q psy9209 312 MECAVVLDPVPPS 324 (349)
Q Consensus 312 ~~~a~~~~p~~~~ 324 (349)
++++.+..|+...
T Consensus 264 ~~r~~~~~~~~~~ 276 (308)
T d2onda1 264 EKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHTTTTTS
T ss_pred HHHHHHHCccccc
Confidence 8877777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.5e-19 Score=119.69 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
+...|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..+.++++++|+++.+|+.+|.++..+|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 193 KISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 193 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
++++|+..|+++++.+|+++.++..++.+.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 888888888888888888888888887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=3.3e-17 Score=132.25 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHHHh-----------cCCCcchHHHHHHHHHHHhh-CcccHHHHHHHHHHHHh
Q psy9209 55 LDTAYKCAQKCLQHEETAEEAKSLLRSIAQK-----------RQPDESSSQAVLYFQRALKL-NPNYLGVWTLLGHEYME 122 (349)
Q Consensus 55 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~ 122 (349)
.+.+...|++++...|.++..|..+...... ....+..++|...|+++++. .|.+...|...+.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3557778999999999999988766543211 01124568899999999975 78888899999999999
Q ss_pred cCChHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hhCHHHHHHH
Q psy9209 123 MKNTNAAIQCYRQAIEINNLD-YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK-QEKISEAMKC 200 (349)
Q Consensus 123 ~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~ 200 (349)
.|+++.|...|++++...|.+ ..+|..++......|+++.|..+|+++++..|.+...+...+..... .|+.+.|..+
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 999999999999999998876 45789999999999999999999999999999999999998887554 5899999999
Q ss_pred HHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy9209 201 YNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQK 280 (349)
Q Consensus 201 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (349)
|++++...|.++..|...+......|+++.|..+|++++...|.. .......|..........|+.+.+..++++
T Consensus 192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~-----~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC-----GGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987651 112456788888888889999999999999
Q ss_pred HHcccCChH
Q psy9209 281 CLQHEETAE 289 (349)
Q Consensus 281 a~~~~~~~~ 289 (349)
+.+..|...
T Consensus 267 ~~~~~~~~~ 275 (308)
T d2onda1 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHCcccc
Confidence 988877653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=1.3e-18 Score=139.31 Aligned_cols=203 Identities=15% Similarity=0.041 Sum_probs=151.0
Q ss_pred cCCCcchHHHHHHHHHHHhhC------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc------HHHHHHHHHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLN------PNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD------YRAWYGLGQT 153 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~ 153 (349)
|...|++++|++.|.+++++. +....++..+|.+|..+|++++|+..|++++++.+.. ..++..+|.+
T Consensus 47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 126 (290)
T d1qqea_ 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (290)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHh
Confidence 334578888888888887763 2234678888999999999999999999998875543 5677888888
Q ss_pred HHH-hCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-------HHHHHHHH
Q psy9209 154 YEI-LRLPYYGLYYYKQAHMVRPND------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-------GKALFKLA 219 (349)
Q Consensus 154 ~~~-~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~ 219 (349)
+.. .|++++|+.+|++++++.+.. ..++..+|.++..+|++++|+..|++++...+.. ...+...|
T Consensus 127 ~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (290)
T d1qqea_ 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (290)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHH
Confidence 865 699999999999998764322 3567889999999999999999999999886654 34567888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH--hCCHHHHHHHHHHHHcccCChHHHH
Q psy9209 220 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK--ANNLDTAYKCAQKCLQHEETAEEAK 292 (349)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~ 292 (349)
.++...|++..|...+++++..+|.. .. .........++.++.. .+.+++|+..|.++.+++|......
T Consensus 207 ~~~l~~~d~~~A~~~~~~~~~~~~~~---~~-sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L 277 (290)
T d1qqea_ 207 LCQLAATDAVAAARTLQEGQSEDPNF---AD-SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (290)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCc---cc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 89999999999999999999988762 11 1123344556555554 3569999999998888876544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.3e-19 Score=155.92 Aligned_cols=229 Identities=11% Similarity=-0.064 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy9209 57 TAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQA 136 (349)
Q Consensus 57 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 136 (349)
+|+++|++++++.|+..+++..++. ++...|++++| |++++..+|+....+...+.+. ...+..+++.+++.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~---~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAE---VWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSS---SHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHH---HHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence 5667777777777776666433333 23333555554 6677777776555543322222 12245566666666
Q ss_pred HHhCc--ccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHH
Q psy9209 137 IEINN--LDY-RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGK 213 (349)
Q Consensus 137 ~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 213 (349)
.+... +.. .....++.+....+.|+.|+..+.+++.++|.+...+..+|.++...|++++|+..+++++..+| ..
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~ 153 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QH 153 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HH
Confidence 54321 111 11222344555566677777777777777777777777777777777777777777777666554 34
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHH
Q psy9209 214 ALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKS 293 (349)
Q Consensus 214 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 293 (349)
++..+|.++...|++++|+.+|++++.+.|+ .+.+++.||.++...|+..+|+.+|.+++...|..+.++.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~---------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~ 224 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS---------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5666777777777777777777777777776 6677777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCC
Q psy9209 294 LLRSIAQKRQP 304 (349)
Q Consensus 294 ~l~~~~~~~~~ 304 (349)
+|+.++....+
T Consensus 225 nL~~~~~~~~~ 235 (497)
T d1ya0a1 225 NLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhh
Confidence 77766655443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.7e-20 Score=159.25 Aligned_cols=228 Identities=12% Similarity=-0.053 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchH
Q psy9209 14 AAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSS 93 (349)
Q Consensus 14 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (349)
+|++.|+++++.-+... .++..+|.++..+|++++| |++++..+|+..........+.. ..+.
T Consensus 4 eA~q~~~qA~~l~p~~a---------~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~-----~~y~ 66 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMT---------DSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN-----HAFK 66 (497)
T ss_dssp HHHHHHHHHHHHHGGGT---------CSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH-----HHTH
T ss_pred HHHHHHHHHHHcCCCCH---------HHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH-----HHHH
Confidence 68899999995443332 2467889999999999876 89999999987776544443322 2356
Q ss_pred HHHHHHHHHHhhCc--ccHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 94 QAVLYFQRALKLNP--NYLG-VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQA 170 (349)
Q Consensus 94 ~A~~~~~~~~~~~~--~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 170 (349)
.+++.+++..+... +... ....++.+....+.|+.|+..+.+++.++|.+...+.++|.++...|++++|+..+.++
T Consensus 67 ~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 146 (497)
T d1ya0a1 67 NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS 146 (497)
T ss_dssp HHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHH
T ss_pred HHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHH
Confidence 77788887776442 2222 22334566667788888888888888888988899999999999999999999999888
Q ss_pred HhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCC
Q psy9209 171 HMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPD 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 250 (349)
+..+| ..++..+|.++...|++++|+.+|++++.++|+++.+++.+|.++...|++.+|+.+|.+++...|.
T Consensus 147 l~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~------ 218 (497)
T d1ya0a1 147 CSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP------ 218 (497)
T ss_dssp HHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC------
T ss_pred hCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------
Confidence 87665 3678889999999999999999999999999999999999999999999999999999999998887
Q ss_pred CcchHHHHHHHHHHHHHhC
Q psy9209 251 KTCGFFAFKYLANHHLKAN 269 (349)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g 269 (349)
.+.++.+|+.++.+..
T Consensus 219 ---~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 219 ---FPAASTNLQKALSKAL 234 (497)
T ss_dssp ---CHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHhh
Confidence 7889999988887654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.5e-18 Score=125.34 Aligned_cols=138 Identities=14% Similarity=0.053 Sum_probs=98.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCc
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNE 227 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 227 (349)
++.|..+...|++++|+..|.+ +.|.++.+++++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|+
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 3456667777777777776664 3445566777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcccccCC-------CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCCh
Q psy9209 228 TEAAADLFMEFVSKLDTFAA-------PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETA 288 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 288 (349)
+++|+..|++++...+.+.. .........+++++|.++...|++++|++.+++++.+.|+.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 77777777777665443210 01112246889999999999999999999999999998864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.3e-18 Score=116.70 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHH
Q psy9209 182 TALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYL 261 (349)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (349)
...|..+...|++++|+.+|+++++.+|.++.++..+|.++..+|++++|+..+.+++.++|. .+.+|+.+
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~ 77 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---------WGKGYSRK 77 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc---------hhhHHHHH
Confidence 345666666666666666666666666666666666666666666666666666666666665 55666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHH
Q psy9209 262 ANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 299 (349)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 299 (349)
|.++..+|++++|+..|+++++.+|+++.++..++.+.
T Consensus 78 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 78 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 66666666666666666666666666666665555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-17 Score=124.03 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=84.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCH
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKI 194 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (349)
+.|..+...|++++|++.|.++ .|.++.+|+++|.+|..+|++++|+..|+++++++|+++.++.++|.++..+|++
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 4566666666666666666542 3445566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHccccc----------------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 195 SEAMKCYNKSRAIGDA----------------DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 195 ~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
++|+..|++++...+. ...+++++|.++..+|++++|+..+.+++.+.|.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6666666666654221 2466777888888888888888888888877665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7.9e-18 Score=121.90 Aligned_cols=123 Identities=19% Similarity=0.111 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
.+...|..++..|+|++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.++..+
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 35567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCHHHHHHHHHHHHccccccHHHHHHHHHHHH--hcCcHHHHHHH
Q psy9209 192 EKISEAMKCYNKSRAIGDADGKALFKLAKLYD--KLNETEAAADL 234 (349)
Q Consensus 192 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~ 234 (349)
|++++|+..+++++.++|+++.++..++.+.. ..+.+++|+..
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888777766643 33345555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.3e-17 Score=119.36 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=103.9
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhC
Q psy9209 79 LRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILR 158 (349)
Q Consensus 79 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 158 (349)
+...|..+++.|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+++.+|..+|.++..+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 33445566677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--HhhCHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFE--KQEKISEAMKC 200 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~ 200 (349)
++++|+..+++++.+.|+++.++..++.+.. ..+.+++|+..
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988888776653 34445555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=9.8e-18 Score=126.72 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFE 189 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (349)
...+...|..++..|+|++|+..|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|..+|.++.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhCHHHHHHHHHHHHccccccHHHHHHHHH
Q psy9209 190 KQEKISEAMKCYNKSRAIGDADGKALFKLAK 220 (349)
Q Consensus 190 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 220 (349)
.+|++++|+..|+++++++|.....+...+.
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 8888888888888888887765443333333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=4e-17 Score=123.28 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHH
Q psy9209 143 DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLY 222 (349)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 222 (349)
....+...|..+...|++++|+..|++++.++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.++
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcccc
Q psy9209 223 DKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 223 ~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..+|++++|+..|++++.+.|.
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.6e-16 Score=112.29 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---------------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
..+...|..++..|+|++|+..|++++...|. ...++.++|.+|..+|++++|+.++++++.++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34455667777777777777777777766442 134567788889999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHH
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAA 231 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 231 (349)
+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888887766655544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.69 E-value=3.5e-16 Score=105.52 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQ 191 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (349)
.++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.+|...
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 34677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCHHHHHHHHHHHH
Q psy9209 192 EKISEAMKCYNKSR 205 (349)
Q Consensus 192 ~~~~~A~~~~~~a~ 205 (349)
|++++|++.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888887765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.68 E-value=9.2e-16 Score=111.98 Aligned_cols=136 Identities=23% Similarity=0.233 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 41 AFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
.+...|..++..|++++|+..|++++...+..... ....+.....|....++.++|.++
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA---------------------AEDADGAKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH---------------------SCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh---------------------hhhHHHHHhChhhHHHHHHHHHHH
Confidence 35667888889999999999999888754432111 111223345566777888888888
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHH
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEA 197 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 197 (349)
..+|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+........++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877766655554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.67 E-value=1.7e-15 Score=110.56 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=97.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----------------hCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Q psy9209 115 LLGHEYMEMKNTNAAIQCYRQAIE----------------INNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP 178 (349)
Q Consensus 115 ~la~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (349)
..|..+...|+|++|+..|+++++ +.|....++.++|.++..+|++++|+..++++++++|+++
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 111 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 111 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
Confidence 445555555555555555555543 3566778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAA 232 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 232 (349)
.+++.+|.++..+|++++|+..|+++++++|++..+...++.+........++.
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887766655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.66 E-value=5.5e-16 Score=104.53 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh
Q psy9209 145 RAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK 224 (349)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 224 (349)
..++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHH
Q psy9209 225 LNETEAAADLFMEFV 239 (349)
Q Consensus 225 ~~~~~~A~~~~~~~~ 239 (349)
+|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.2e-16 Score=105.70 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=84.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHH
Q psy9209 183 ALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL---NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFK 259 (349)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
.++..+...+++++|.+.|++++..+|.++.+++++|.++... +++++|+..|++++..+|.. ....+++
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-------~~~~~~~ 76 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-------EQRDYVF 76 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-------HHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-------hHHHHHH
Confidence 4566777788888888888888888888888888888887653 34556888888887766541 1345788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHH
Q psy9209 260 YLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK 301 (349)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 301 (349)
++|.+|...|++++|+.+|+++++++|++..+...++.+...
T Consensus 77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 77 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888887777766554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.2e-15 Score=108.27 Aligned_cols=122 Identities=16% Similarity=0.039 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---------------HHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---------------RMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
...+...|..++..|++++|+..|++++...|... .++.++|.+|.++|++++|+..+++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 45667889999999999999999999999877543 456789999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHH
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTA 274 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (349)
|.++.+++.+|.++..+|++++|+..|++++.++|+ ++.+...++.+....+...+.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~---------n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN---------NKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 789999999988777665544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.65 E-value=4.9e-15 Score=107.82 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy9209 111 GVWTLLGHEYMEMKNTNAAIQCYRQAIEINNL---------------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRP 175 (349)
Q Consensus 111 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (349)
..+...|..+...|+|.+|+..|++++...|. ...++.++|.+|..+|++++|+..+++++.++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34556677777777777777777777654221 234577888899999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhc
Q psy9209 176 NDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEA-AADLFMEFVSK 241 (349)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~ 241 (349)
+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+....+...+ ..+.|.++++.
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888888888888777665543 44555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=8.9e-16 Score=104.56 Aligned_cols=102 Identities=9% Similarity=-0.067 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhCCHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMK---NTNAAIQCYRQAIEINNLD--YRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A 163 (349)
.+++++|.+.|++++.++|+++.+++++|.++...+ ++++|+..|++++..+|.. ..+++++|.+|...|++++|
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A 91 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHH
Confidence 356666666666666666666666666666665433 3334666666666655433 34566666666666666666
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 164 LYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
+.+|+++++++|++..+...++.+..+
T Consensus 92 ~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 92 LKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 666666666666666665555554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.65 E-value=2.5e-15 Score=107.40 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy9209 113 WTLLGHEYMEMKNTNAAIQCYRQAIEINNL----------------DYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPN 176 (349)
Q Consensus 113 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (349)
+...|..++..|+|.+|+..|++++...+. ...++.++|.+|..+|++++|+..++++++++|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 334455555555555555555555543221 1245677888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 177 DPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..++
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888877777665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.64 E-value=9.5e-16 Score=108.33 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy9209 89 DESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYK 168 (349)
Q Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 168 (349)
.+.+++|+..|+++++++|+++.+++.+|.++...+++..+.+ ..+.+++|+..|+
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~~~~ 65 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAITKFE 65 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHHHHH
Confidence 3556666666666666666666666666666654333211111 1122344555555
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhh-----------CHHHHHHHHHHHHccccccHHHHHHHHHHHHhc
Q psy9209 169 QAHMVRPNDPRMLTALGEAFEKQE-----------KISEAMKCYNKSRAIGDADGKALFKLAKLYDKL 225 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 225 (349)
++++++|+++.+++++|.+|..+| .+++|+.+|+++++++|++..++..++.+....
T Consensus 66 kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 66 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 555555555555555555554433 357777777777777777777777776664333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.63 E-value=6.3e-13 Score=104.38 Aligned_cols=227 Identities=19% Similarity=0.213 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 40 FAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQK-RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
.+++.+|..+...+++++|+++|+++.+. ++..+...++.+... .....++..|..+++.+.... ++.+...+|.
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~ 78 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccc
Confidence 57889999999999999999999998754 456666666655432 112568899999998877644 5677788888
Q ss_pred HHHh----cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy9209 119 EYME----MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK 190 (349)
Q Consensus 119 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 190 (349)
++.. .++.+.|...++++.+..+ ..+...++..+.. ......|...+.+... +.+...+..+|.++..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhcc
Confidence 7765 4678889999998887644 4455666666654 3446667777776654 4567788888888876
Q ss_pred ----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHH
Q psy9209 191 ----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLA 262 (349)
Q Consensus 191 ----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (349)
..+...+..+++.+.+ +.++.+.+.+|.++.. ..++++|+.+|+++.+.. .+.+++.||
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----------~~~a~~~LG 221 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----------NGGGCFNLG 221 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHH
T ss_pred CCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc-----------CHHHHHHHH
Confidence 4566777777777764 3467888888888876 567888888888887753 467888888
Q ss_pred HHHHH----hCCHHHHHHHHHHHHcccCC
Q psy9209 263 NHHLK----ANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 263 ~~~~~----~g~~~~A~~~~~~a~~~~~~ 287 (349)
.+|.. .+++++|..+|+++......
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 88875 34788888888888777543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.1e-15 Score=101.62 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHH
Q psy9209 179 RMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAF 258 (349)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.++..+|++++|+..+++++.++|.. .........++
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~a~~~ 82 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 3456788888899999999999999999999888899999999999999999999999998888873 22223345688
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHH
Q psy9209 259 KYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRS 297 (349)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 297 (349)
..+|.++...+++++|+.+|++++..+++. +....+..
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~-~~~~~l~~ 120 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQ 120 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Confidence 899999999999999999999999887764 34444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.62 E-value=1e-14 Score=104.16 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHH
Q psy9209 39 FFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGH 118 (349)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 118 (349)
...+...|..++..|+|.+|+..|++++...+..... .+.........+ ...++.++|.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~----------------~~~~~~~~~~~~-----~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW----------------DDQILLDKKKNI-----EISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC----------------CCHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh----------------hhHHHHHhhhhH-----HHHHHhhHHH
Confidence 3457788999999999999999999998765532210 011111111111 1346789999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhC
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEK 193 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (349)
+|..+|++++|+..++++++++|.+..+|+.+|.++..+|++++|+..|+++++++|+++.+...++.+..+.++
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888887765543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.61 E-value=3e-15 Score=105.70 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=77.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q psy9209 48 HHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQ-------PDESSSQAVLYFQRALKLNPNYLGVWTLLGHEY 120 (349)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 120 (349)
.+.+.+.|++|+..|+++++++|+++.++..++.+..... ..+.+++|+..|+++++++|+++.+++++|.+|
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 3567788999999999999999999999877776543210 124456677777777777777777777777766
Q ss_pred HhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Q psy9209 121 MEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQE 192 (349)
Q Consensus 121 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (349)
..+|++. +. .....+.+++|+.+|+++++++|++..++..++.+....+
T Consensus 86 ~~~g~~~-------------~~----------~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~ 134 (145)
T d1zu2a1 86 TSFAFLT-------------PD----------ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 134 (145)
T ss_dssp HHHHHHC-------------CC----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred HHcccch-------------hh----------HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence 6554310 00 0001123456666666666666666666655555543333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.61 E-value=3.7e-13 Score=105.72 Aligned_cols=222 Identities=18% Similarity=0.164 Sum_probs=177.1
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q psy9209 80 RSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYME----MKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYE 155 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 155 (349)
..+|..+...+++++|+++|+++.+. .+..+++.+|.+|.. ..++..|...++.+... .++.+...+|.++.
T Consensus 6 ~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 6 VGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccc
Confidence 33444555579999999999999875 468899999999987 77999999999998864 46777888888876
Q ss_pred H----hCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----hhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh---
Q psy9209 156 I----LRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK--- 224 (349)
Q Consensus 156 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--- 224 (349)
. .++.+.|...++++.... ...+...++..+.. ......|...+.+... +.+...+..+|.++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 82 SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSS
T ss_pred cccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCC
Confidence 5 467889999999998764 45666777777765 4457777787777655 4467788899999886
Q ss_pred -cCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcccCChHHHHHHHHHHH
Q psy9209 225 -LNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK----ANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 299 (349)
Q Consensus 225 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 299 (349)
..+...+..+++.+.+. . ++.+.+.+|.++.. ..++++|+.+|+++.+. .++.+...||.++
T Consensus 158 ~~~~~~~~~~~~~~a~~~--g---------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y 224 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDL--K---------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQ 224 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT--T---------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred cccccccchhhhhccccc--c---------ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHH
Confidence 45677888888887753 2 58899999999987 67999999999999887 4678899999999
Q ss_pred HH----cCCCCCchhHHHHhhhcCCCC
Q psy9209 300 QK----RQPDESSSQPMECAVVLDPVP 322 (349)
Q Consensus 300 ~~----~~~~~~A~~~~~~a~~~~p~~ 322 (349)
.. ..++++|.++|+++....+..
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 85 447899999999998876554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-14 Score=100.41 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccH-------HHHHHHHH
Q psy9209 148 YGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADG-------KALFKLAK 220 (349)
Q Consensus 148 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~ 220 (349)
..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.++ .++..+|.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555444332 23445566
Q ss_pred HHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 221 LYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 221 ~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
++..++++++|+.+|++++...+.
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Confidence 666666667777777666665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.60 E-value=2.6e-14 Score=103.85 Aligned_cols=129 Identities=15% Similarity=0.076 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---------------HHHHHHHHHHHHhhCHHHHHHHHHHHHccc
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDP---------------RMLTALGEAFEKQEKISEAMKCYNKSRAIG 208 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 208 (349)
...+...|..++..|++.+|+..|.+++...|... .++.++|.||..+|++++|+..+++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 45677899999999999999999999998644322 457789999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHH-HHHHHHHH
Q psy9209 209 DADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDT-AYKCAQKC 281 (349)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a 281 (349)
|.+..+++.+|.++..+|++++|+..|++++.++|+ +..++..++.+....+...+ ....|.+.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~---------n~~~~~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ---------NKAARLQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 78888888888777665543 33444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.44 E-value=8.1e-13 Score=94.59 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=66.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccc--------
Q psy9209 151 GQTYEILRLPYYGLYYYKQAHMVRPND------------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDA-------- 210 (349)
Q Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------- 210 (349)
|..+...|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 445555555555555555555554432 245667777788888888888877777765332
Q ss_pred ---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 211 ---DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 211 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
...+++++|.++..+|++++|+..|++++++.|.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2446788999999999999999999999998876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.4e-12 Score=84.47 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHH
Q psy9209 211 DGKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEE 290 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 290 (349)
+++..+.+|.++.+.|++++|+.+|++++.+.|.. .........++.++|.++.+.|++++|+.+++++++++|+++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~--~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh--hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 35667899999999999999999999999988763 2233446889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q psy9209 291 AKSLLRSIAQKR 302 (349)
Q Consensus 291 ~~~~l~~~~~~~ 302 (349)
++..++.+...+
T Consensus 82 a~~Nl~~~~~~l 93 (95)
T d1tjca_ 82 ANGNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998776543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.4e-12 Score=83.35 Aligned_cols=80 Identities=13% Similarity=-0.138 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Q psy9209 110 LGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLD-------YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLT 182 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (349)
++.++.+|.++.+.|+|++|+..|++++++.|.+ ..++.++|.++...|++++|+.+|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3445677777777777777777777777664432 456666666666666666666666666666666666666
Q ss_pred HHHHHHH
Q psy9209 183 ALGEAFE 189 (349)
Q Consensus 183 ~l~~~~~ 189 (349)
+++.+..
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.37 E-value=2.8e-12 Score=91.70 Aligned_cols=104 Identities=12% Similarity=-0.082 Sum_probs=86.6
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHcccccc------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccCCC--
Q psy9209 183 ALGEAFEKQEKISEAMKCYNKSRAIGDAD------------GKALFKLAKLYDKLNETEAAADLFMEFVSKLDTFAAP-- 248 (349)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 248 (349)
..|..++..|+|++|+..|++++++.|.. ..++.++|.++..+|++++|+..+++++.+.|.....
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 34788889999999999999999987653 4678899999999999999999999999987653111
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccC
Q psy9209 249 PDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEE 286 (349)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 286 (349)
...+....+++++|.+|..+|++++|+..|++++++.|
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 11223456789999999999999999999999998865
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.31 E-value=4.7e-12 Score=98.10 Aligned_cols=126 Identities=9% Similarity=-0.065 Sum_probs=87.4
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHH
Q psy9209 119 EYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAM 198 (349)
Q Consensus 119 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (349)
-.+..|++++|+..++++++.+|++..++..++.++...|++++|+..++++++++|+....+..++.++...+..+++.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 34556777777777777777777777777777777777777777777777777777777777777777776666665554
Q ss_pred HHHHHHHc-cccccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q psy9209 199 KCYNKSRA-IGDADGKALFKLAKLYDKLNETEAAADLFMEFVSKLDT 244 (349)
Q Consensus 199 ~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 244 (349)
..+.+... ..|.....+...+.++...|++++|...++++.+..|.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 44333222 24445556666777777778888888888887777776
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.30 E-value=4.9e-12 Score=97.95 Aligned_cols=129 Identities=9% Similarity=-0.085 Sum_probs=109.5
Q ss_pred cCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 86 RQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
....|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+....+..++.++...+..+++..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 45579999999999999999999999999999999999999999999999999999999999999999887777766655
Q ss_pred HHHHHHhc-CCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHH
Q psy9209 166 YYKQAHMV-RPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKA 214 (349)
Q Consensus 166 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 214 (349)
.+.+.... .|.....+...+.++...|++++|...++++.+..|..+..
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 44433222 45455667788999999999999999999999998876443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=1.6e-10 Score=83.88 Aligned_cols=119 Identities=15% Similarity=0.026 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHH
Q psy9209 38 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLG 117 (349)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 117 (349)
.+..+...|......|++++|+..|.+++.+.++..... . ..+.+ .......+.+....++..++
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~--~~~~w-----~~~~r~~l~~~~~~a~~~la 74 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L--RDFQF-----VEPFATALVEDKVLAHTAKA 74 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G--TTSTT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C--cchHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999998877653210 0 00111 11222334455567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 118 HEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAH 171 (349)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 171 (349)
.++...|++++|+..++++++.+|.+..+|..++.++...|++.+|+..|+++.
T Consensus 75 ~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888873
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=1.6e-09 Score=78.55 Aligned_cols=117 Identities=8% Similarity=-0.205 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q psy9209 144 YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYD 223 (349)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 223 (349)
...+...|......|++++|+..|.+++.+.++........+. -.......+.+....++..++.++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~------------w~~~~r~~l~~~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ------------FVEPFATALVEDKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST------------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666555544321110000 0001111222334455666666666
Q ss_pred hcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9209 224 KLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKC 281 (349)
Q Consensus 224 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 281 (349)
..|++++|+..+++++..+|. +..+|..++.++...|++.+|+..|+++
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~---------~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPY---------REPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666666666666666666666 5666666666666666666666666665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.1e-07 Score=61.00 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCC
Q psy9209 211 DGKALFKLAKLYDKL---NETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEET 287 (349)
Q Consensus 211 ~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 287 (349)
...+.+..|.++.+. .+.++++..++.++..+|.. ..+.++.||..|.+.|++++|..+++++++++|+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 467788888888755 45568899999988877752 4588899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q psy9209 288 AEEAKSLLRSIAQ 300 (349)
Q Consensus 288 ~~~~~~~l~~~~~ 300 (349)
+..+......+..
T Consensus 106 n~qA~~L~~~Ie~ 118 (124)
T d2pqrb1 106 NKQVGALKSMVED 118 (124)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9888777666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.62 E-value=8e-07 Score=60.68 Aligned_cols=109 Identities=22% Similarity=0.166 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCHHHHHHH
Q psy9209 91 SSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEI----LRLPYYGLYY 166 (349)
Q Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 166 (349)
|+++|+.+|+++.+.. ++.+.+.++. ....++++|+.+++++.+. .++.+.+.+|.+|.. ..++++|+.+
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 4555555555554432 2233333332 2234455555555555443 344555555555543 2345555555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH----hhCHHHHHHHHHHHHcc
Q psy9209 167 YKQAHMVRPNDPRMLTALGEAFEK----QEKISEAMKCYNKSRAI 207 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 207 (349)
|+++.+. .++.+.+.+|.+|.. ..++.+|+.+|+++.+.
T Consensus 82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 5555443 344555555555544 23455555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=1.1e-06 Score=57.63 Aligned_cols=78 Identities=6% Similarity=-0.057 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy9209 110 LGVWTLLGHEYMEMKN---TNAAIQCYRQAIEINNLD-YRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALG 185 (349)
Q Consensus 110 ~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 185 (349)
..+.+..|.++....+ ..+|+.+++++++.+|.+ .++++.+|..|.++|+|++|..+++++++++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 4566777777765543 456777777777777755 467777777777777777777777777777777776654443
Q ss_pred HH
Q psy9209 186 EA 187 (349)
Q Consensus 186 ~~ 187 (349)
.+
T Consensus 115 ~I 116 (124)
T d2pqrb1 115 MV 116 (124)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.58 E-value=9e-07 Score=60.42 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHh----cCcHHHHHHH
Q psy9209 159 LPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDK----LNETEAAADL 234 (349)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 234 (349)
++++|+.+|+++.+.. ++.+...++. ....++++|+.+++++.+. .++.+.+.+|.+|.. ..++++|+.+
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 3444555555544432 2333333332 1234455566666555543 345555556655543 3345666666
Q ss_pred HHHHHhcccccCCCCCCcchHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcc
Q psy9209 235 FMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK----ANNLDTAYKCAQKCLQH 284 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 284 (349)
|+++.+.. .+.+.+.||.+|.. ..+..+|+.+|+++.+.
T Consensus 82 ~~~aa~~g-----------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 82 YSKACGLN-----------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HhhhhccC-----------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 66665532 34555666666655 34566666666666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=0.0042 Score=51.24 Aligned_cols=242 Identities=8% Similarity=-0.061 Sum_probs=145.5
Q ss_pred HHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCc
Q psy9209 62 AQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINN 141 (349)
Q Consensus 62 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 141 (349)
+...++.+|+.+....+.......+...+++...+..+ ...|.+.......+.+....|+..+|...+..+....+
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 45556668887766544433333333446776654433 34677777778888899999999999888777654322
Q ss_pred c------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHH-------------Hhc-----------CCCChH
Q psy9209 142 L------------------DYRAWYGLGQTYEILRLPYYGLYYYKQA-------------HMV-----------RPNDPR 179 (349)
Q Consensus 142 ~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------~~~-----------~~~~~~ 179 (349)
. .+..+..........|++..|...+..+ +.. .+.++.
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~ 213 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF 213 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHH
T ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChh
Confidence 1 1222333344444555555444332211 001 122221
Q ss_pred --HHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHH----HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcc
Q psy9209 180 --MLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALF----KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTC 253 (349)
Q Consensus 180 --~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
.....+..-....+.+.|...+.......+.....+. .++......+..+.+...+........+
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~--------- 284 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS--------- 284 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC---------
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc---------
Confidence 1223344444557888888888776655443333332 2333334556677888877766654433
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCCCchhHHHHhhh
Q psy9209 254 GFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQPMECAVV 317 (349)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 317 (349)
.......++ .....+++..+...+...-......+...+++|..+...|+.+.|...|..+..
T Consensus 285 ~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 285 TSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 233333333 456678999999988876444445577889999999999999999999999764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.005 Score=48.21 Aligned_cols=267 Identities=11% Similarity=0.021 Sum_probs=128.7
Q ss_pred hhHHhhCcHHHHHHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy9209 4 KLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIA 83 (349)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 83 (349)
....+.|.|+.|..+|...- -+..+..++...+++..|...+.+. +++..|..+....
T Consensus 22 ~~c~~~~lye~A~~lY~~~~-----------------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l 79 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNVS-----------------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 79 (336)
T ss_dssp -------CTTTHHHHHHHTT-----------------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCC-----------------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHH
Confidence 34456677777777764321 1445666777777787777766654 2233333232221
Q ss_pred HhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHH
Q psy9209 84 QKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYG 163 (349)
Q Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 163 (349)
.- .....-+ ......+ ...++-.......|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-
T Consensus 80 ~~---~~e~~la-~i~~~~~---~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 80 VD---GKEFRLA-QMCGLHI---VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HH---TTCHHHH-HHTTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred Hh---CcHHHHH-HHHHHHh---hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHH
Confidence 11 1222211 1111111 1233444556677778888888888888888777777778888888776543 4444
Q ss_pred HHHHHHHHh-cCCCC-------hHHHHHHHHHHHHhhCHHHHHHHHHHHHccccccHHHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 164 LYYYKQAHM-VRPND-------PRMLTALGEAFEKQEKISEAMKCYNKSRAIGDADGKALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 164 ~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
.++++..-. .++.. ...|-.+..+|.+.|++++|+..+-.- |.+..-....-.++.+..+.+...+..
T Consensus 152 ~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~----~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 152 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH----PTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS----TTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc----chhhhhHHHHHHHHHccCChHHHHHHH
Confidence 444443211 11110 122445666777777877776654331 111111122222333444444333333
Q ss_pred HHHHhcccccCC-CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHcCCCC
Q psy9209 236 MEFVSKLDTFAA-PPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDE 306 (349)
Q Consensus 236 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 306 (349)
.-.++..|..-. .-......--...+.....+.++..-...+++..... ++..+...+..++...++++
T Consensus 228 ~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~ 297 (336)
T d1b89a_ 228 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQ 297 (336)
T ss_dssp HHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhH
Confidence 333333332000 0000000000122334445556666666666665443 34567888888888888753
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.026 Score=46.31 Aligned_cols=180 Identities=8% Similarity=-0.093 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHHHhhCcccHHHHH----HHHHHHHhcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHH
Q psy9209 90 ESSSQAVLYFQRALKLNPNYLGVWT----LLGHEYMEMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLY 165 (349)
Q Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~----~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 165 (349)
.+.+.|...+.......+.....+. .++......+..+.+...+........+.......++. ....+++..+..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~ 306 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNT 306 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHH
Confidence 3566666666665544433332222 22222233455666666666655544333333333333 344567777776
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHHHHHHcccccc-----------------------------HHHHH
Q psy9209 166 YYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCYNKSRAIGDAD-----------------------------GKALF 216 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------------------~~~~~ 216 (349)
.+..+-......+...+.+|..+...|+.++|...|..+... ++. ...-.
T Consensus 307 ~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 385 (450)
T d1qsaa1 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM 385 (450)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH
T ss_pred HHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHH
Confidence 666543332333456677777777777777777777776542 110 11123
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy9209 217 KLAKLYDKLNETEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLKANNLDTAYKCAQKCL 282 (349)
Q Consensus 217 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 282 (349)
..+..+...|+...|...+..++... ...-...++.+..+.|.++.|+....++-
T Consensus 386 ~ra~~L~~~g~~~~A~~e~~~l~~~~-----------~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 386 ARVRELMYWNLDNTARSEWANLVKSK-----------SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 45666778888888888887776532 24456677888888888888887776653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.06 E-value=0.042 Score=42.79 Aligned_cols=173 Identities=15% Similarity=0.067 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhchHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q psy9209 42 FKYLANHHLKANNLDTAYKCAQKCLQHEETAEEAKSLLRSIAQKRQPDESSSQAVLYFQRALKLNPNYLGVWTLLGHEYM 121 (349)
Q Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 121 (349)
.-..|..+.+.|.++.|...|...-. +..+..++.+.++++.|...+.+. +.+.+|..+...+.
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d-----------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN-----------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 80 (336)
T ss_dssp ------------CTTTHHHHHHHTTC-----------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-----------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHH
Confidence 45688889999999999999985422 222223344568999999888765 45678888888888
Q ss_pred hcCChHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhCHHHHHHHH
Q psy9209 122 EMKNTNAAIQCYRQAIEINNLDYRAWYGLGQTYEILRLPYYGLYYYKQAHMVRPNDPRMLTALGEAFEKQEKISEAMKCY 201 (349)
Q Consensus 122 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (349)
...+..-|..+ ...+.. ++.-...+...|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-.+.+
T Consensus 81 ~~~e~~la~i~-~~~~~~---~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 81 DGKEFRLAQMC-GLHIVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp HTTCHHHHHHT-TTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred hCcHHHHHHHH-HHHhhc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 87776554221 111112 33444567778889999999999999999888888889999999887654 45556666
Q ss_pred HHH-Hcccccc-------HHHHHHHHHHHHhcCcHHHHHHHH
Q psy9209 202 NKS-RAIGDAD-------GKALFKLAKLYDKLNETEAAADLF 235 (349)
Q Consensus 202 ~~a-~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~ 235 (349)
+.. ...++.. ...|-.+..+|.+.|++++|+..+
T Consensus 156 ~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 156 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence 543 2222221 123455677788888888887655
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.10 E-value=3.9 Score=29.27 Aligned_cols=55 Identities=9% Similarity=0.015 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHH-HHHhCCHHHHHHHHHHHHc
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANH-HLKANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~ 283 (349)
.+.|...|++|+.+....- ...+|.......+.+.. |.-.|+.++|....++++.
T Consensus 142 ~~~a~~aY~~A~~~A~~~L-~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd 197 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEM-QPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD 197 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578888888876543210 11233333344444444 4457999999998888764
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.61 E-value=0.7 Score=26.57 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=20.7
Q ss_pred hhhhHHhhCcHHHHHHHHHHHHHh
Q psy9209 2 RNKLYDKLNETEAAADLFMEFVSK 25 (349)
Q Consensus 2 ~a~~~~~~g~~~~A~~~~~~~~~~ 25 (349)
||.-+.+.|.|++||++++++..-
T Consensus 14 rAer~l~~~rydeAIech~kA~~y 37 (83)
T d2crba1 14 RADRLLAAGKYEEAISCHRKATTY 37 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 577889999999999999998843
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=86.00 E-value=4.6 Score=29.01 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH-hCCHHHHHHHHHHHHc
Q psy9209 228 TEAAADLFMEFVSKLDTFAAPPDKTCGFFAFKYLANHHLK-ANNLDTAYKCAQKCLQ 283 (349)
Q Consensus 228 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~ 283 (349)
.+.|...|++|..+.... ....+|.......+.+..++. .|+.++|....++++.
T Consensus 147 ~~~a~~aY~~A~~~a~~~-l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd 202 (236)
T d1o9da_ 147 AESTLTAYKAAQDIATTE-LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788888887654221 011234344455555555554 5999999998888865
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.11 E-value=1.6 Score=25.01 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy9209 112 VWTLLGHEYMEMKNTNAAIQCYRQAIE 138 (349)
Q Consensus 112 ~~~~la~~~~~~~~~~~A~~~~~~a~~ 138 (349)
.+...|.-+...|+|++|+++.+++..
T Consensus 10 ~~~RrAer~l~~~rydeAIech~kA~~ 36 (83)
T d2crba1 10 QQSRRADRLLAAGKYEEAISCHRKATT 36 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667777788888888887776654
|