Psyllid ID: psy9213

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPMLNLC
cHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHEEEEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHEEEEEHHHHHHHHHHHHHHHHHEccHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcEHHHHHHHHHHHHHHHHHHcccHHHHHHHHEEEHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccHHHcccccccEEEEEEEEEEEccccHHHcccccccccccHHHccc
MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAmgnteniahpmqnsnwdpgyVALSFYSGLFSYSGWNYLNFVTEElknpyknlpkaicvsmplSTIVYLLVNVAYFVVLSKEellssntvavtfgakilpmlTWLMPLFvscstfgalngaifasSRLFFVGARNGHLPKAIALINvkrytpcpsLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLrlkrpdlkrpikvsiILPITFFIIAAFLVTlpmyvkpweVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRlieldvrqtihvcpgglflnpmlnlc
MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWlrlkrpdlkrpikVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHvcpgglflnpmlnlc
MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPMLNLC
**YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPML***
MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPMLNLC
MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPMLNLC
MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPMLNLC
oooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
ooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEYTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVFIGSRMVGTTTRNMQQARNMMGKLRCTLMGRCRLIELDVRQTIHVCPGGLFLNPMLNLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q9QXW9531 Large neutral amino acids yes N/A 0.785 0.559 0.487 3e-83
Q9WVR6533 Large neutral amino acids yes N/A 0.785 0.557 0.483 6e-83
Q5RAE3535 Large neutral amino acids yes N/A 0.785 0.555 0.483 1e-82
Q9UHI5535 Large neutral amino acids yes N/A 0.785 0.555 0.483 1e-82
Q9N1Q4535 Large neutral amino acids yes N/A 0.785 0.555 0.477 3e-82
Q92536515 Y+L amino acid transporte no N/A 0.870 0.638 0.441 4e-80
Q8BGK6515 Y+L amino acid transporte no N/A 0.880 0.646 0.445 5e-80
Q7YQK4503 Large neutral amino acids no N/A 0.796 0.598 0.488 3e-79
Q9UM01511 Y+L amino acid transporte no N/A 0.838 0.620 0.461 9e-79
Q59I64468 Y+L amino acid transporte no N/A 0.796 0.643 0.485 1e-78
>sp|Q9QXW9|LAT2_MOUSE Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1 Back     alignment and function desciption
 Score =  308 bits (790), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 152/312 (48%), Positives = 213/312 (68%), Gaps = 15/312 (4%)

Query: 14  TAINCYNVKWVTRLQDVFTATKMLALGGIVIAGM---------WFLAMGNTENIAHPMQN 64
           T +NC +V+W TR+QD+FTA K+LAL  I+I G+         W       EN   P   
Sbjct: 172 TWVNCSSVRWATRVQDIFTAGKLLALALIIIMGIVQICKGEFFWLEPKNAFENFQEP--- 228

Query: 65  SNWDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVA 124
              D G VAL+F  G F+Y GWN+LN+VTEEL +PYKNLP+AI +S+PL T VY+  N+A
Sbjct: 229 ---DIGLVALAFLQGSFAYGGWNFLNYVTEELVDPYKNLPRAIFISIPLVTFVYVFANIA 285

Query: 125 YFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGAR 184
           Y   +S +ELL+SN VAVTFG K+L ++ W+MP+ V+ STFG +NG++F SSRLFF GAR
Sbjct: 286 YVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAR 345

Query: 185 NGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGL 244
            GHLP  +A+I+VKR TP P+L+F C+ TLL++   D++ LINY  F+   F   +V G 
Sbjct: 346 EGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGVTVAGQ 405

Query: 245 LWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVF 304
           + LR K+PD+ RPIKVS++ PI + +  AFL+   ++ +P   GIGL ++L+G+PVY + 
Sbjct: 406 IVLRWKKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVPVYFLG 465

Query: 305 VYWKDKPRWLNN 316
           VYW+ KP+  N+
Sbjct: 466 VYWQHKPKCFND 477
Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.
Mus musculus (taxid: 10090)
>sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAE3|LAT2_PONAB Large neutral amino acids transporter small subunit 2 OS=Pongo abelii GN=SLC7A8 PE=2 SV=2 Back     alignment and function description
>sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1 Back     alignment and function description
>sp|Q9N1Q4|LAT2_RABIT Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1 Back     alignment and function description
>sp|Q92536|YLAT2_HUMAN Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3 Back     alignment and function description
>sp|Q8BGK6|YLAT2_MOUSE Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=2 SV=1 Back     alignment and function description
>sp|Q7YQK4|LAT1_RABIT Large neutral amino acids transporter small subunit 1 OS=Oryctolagus cuniculus GN=SLC7A5 PE=1 SV=1 Back     alignment and function description
>sp|Q9UM01|YLAT1_HUMAN Y+L amino acid transporter 1 OS=Homo sapiens GN=SLC7A7 PE=1 SV=2 Back     alignment and function description
>sp|Q59I64|YLAT2_DANRE Y+L amino acid transporter 2 OS=Danio rerio GN=slc7a6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
307205380 496 Large neutral amino acids transporter sm 0.806 0.614 0.695 1e-127
350399823 489 PREDICTED: large neutral amino acids tra 0.812 0.627 0.687 1e-126
340712486 489 PREDICTED: large neutral amino acids tra 0.812 0.627 0.687 1e-126
156548342 507 PREDICTED: large neutral amino acids tra 0.801 0.597 0.706 1e-125
380016932 489 PREDICTED: LOW QUALITY PROTEIN: large ne 0.812 0.627 0.697 1e-121
66550796 489 PREDICTED: large neutral amino acids tra 0.812 0.627 0.690 1e-119
383852420338 PREDICTED: large neutral amino acids tra 0.809 0.905 0.699 1e-119
91083729 486 PREDICTED: similar to amino acids transp 0.798 0.621 0.652 1e-116
242007493 494 large neutral amino acids transporter, p 0.822 0.629 0.649 1e-116
322779194401 hypothetical protein SINV_09992 [Solenop 0.817 0.770 0.699 1e-115
>gi|307205380|gb|EFN83721.1| Large neutral amino acids transporter small subunit 2 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/305 (69%), Positives = 264/305 (86%)

Query: 12  LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
           LLTAINCYNVKW TR+QD+FT TK+ AL  I++AG W+   G+TEN  HP+  +N  PGY
Sbjct: 170 LLTAINCYNVKWATRVQDIFTGTKIFALVIIMVAGFWWFCKGHTENFQHPIAGTNTQPGY 229

Query: 72  VALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSK 131
           +AL+ YSGLFSYSGWNYLNFVTEELK+PYKNLPKAIC+S+PL T++Y+  N+AYFVVL++
Sbjct: 230 IALAVYSGLFSYSGWNYLNFVTEELKDPYKNLPKAICISLPLVTVIYVFANIAYFVVLTQ 289

Query: 132 EELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA 191
           +E+L+SN VAVTFG K+L +++W++P FV+CSTFGALNGAIFASSRLFFVGARNGHLP A
Sbjct: 290 DEILASNAVAVTFGDKLLGVMSWIIPFFVACSTFGALNGAIFASSRLFFVGARNGHLPTA 349

Query: 192 IALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKR 251
           IALIN++  TP PSL+FLCIITL+L+ I+DV+ALINY +FVE+ FT  SV+GLLWLR KR
Sbjct: 350 IALINIRNLTPMPSLIFLCIITLVLLIIEDVYALINYVSFVEALFTTLSVSGLLWLRYKR 409

Query: 252 PDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKP 311
           PDL+RPIKV I LPI FFII AFLVT+P YV PWEVG+G+++I+SGIPVY++F++WK+KP
Sbjct: 410 PDLERPIKVWIALPIIFFIICAFLVTVPCYVSPWEVGVGVIVIISGIPVYLIFIHWKEKP 469

Query: 312 RWLNN 316
            WL N
Sbjct: 470 AWLVN 474

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350399823|ref|XP_003485650.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340712486|ref|XP_003394790.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|156548342|ref|XP_001603387.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380016932|ref|XP_003692421.1| PREDICTED: LOW QUALITY PROTEIN: large neutral amino acids transporter small subunit 2-like [Apis florea] Back     alignment and taxonomy information
>gi|66550796|ref|XP_395404.2| PREDICTED: large neutral amino acids transporter small subunit 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383852420|ref|XP_003701726.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|91083729|ref|XP_970665.1| PREDICTED: similar to amino acids transporter [Tribolium castaneum] gi|270006804|gb|EFA03252.1| hypothetical protein TcasGA2_TC013186 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242007493|ref|XP_002424574.1| large neutral amino acids transporter, putative [Pediculus humanus corporis] gi|212508017|gb|EEB11836.1| large neutral amino acids transporter, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322779194|gb|EFZ09530.1| hypothetical protein SINV_09992 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
FB|FBgn0002778499 mnd "minidiscs" [Drosophila me 0.793 0.601 0.625 6.9e-102
FB|FBgn0039487517 gb "genderblind" [Drosophila m 0.804 0.588 0.506 3e-85
UNIPROTKB|Q7YQK4503 SLC7A5 "Large neutral amino ac 0.801 0.602 0.491 3.1e-83
ZFIN|ZDB-GENE-030616-586531 slc7a8b "solute carrier family 0.798 0.568 0.498 3.6e-82
UNIPROTKB|Q9TU26505 LAT "Blood-brain barrier large 0.801 0.6 0.488 7.4e-82
UNIPROTKB|Q01650507 SLC7A5 "Large neutral amino ac 0.801 0.597 0.485 2.5e-81
UNIPROTKB|F1PH98516 SLC7A5 "Uncharacterized protei 0.801 0.587 0.485 6.6e-81
MGI|MGI:1298205512 Slc7a5 "solute carrier family 0.809 0.597 0.476 6.6e-81
UNIPROTKB|F1MYX6528 SLC7A8 "Uncharacterized protei 0.804 0.575 0.498 1.1e-80
MGI|MGI:1355323531 Slc7a8 "solute carrier family 0.806 0.574 0.493 1.8e-80
FB|FBgn0002778 mnd "minidiscs" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 190/304 (62%), Positives = 244/304 (80%)

Query:    12 LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSNWDPGY 71
             +LT INCYNVKWVTR+ D+FT TK++AL  IV AG+W+L  GNTE+  +P      DPGY
Sbjct:   174 VLTLINCYNVKWVTRVTDIFTGTKVVALLVIVGAGVWWLFDGNTEHWDNPFSGGLQDPGY 233

Query:    72 VALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSK 131
             +AL+FYSGLFSYSGWNYLNFVTEELK+PY+NLPKAIC+SMP+ T++Y++ N+AYF VLS 
Sbjct:   234 IALAFYSGLFSYSGWNYLNFVTEELKDPYRNLPKAICISMPVVTVIYMITNIAYFSVLSP 293

Query:   132 EELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKA 191
             +E+LSS+ VAVTFG K+L  ++W+MP  V+CSTFG+LNGAIFASSRLFFVGARNGHLP A
Sbjct:   294 DEILSSDAVAVTFGDKMLGYMSWIMPFAVACSTFGSLNGAIFASSRLFFVGARNGHLPAA 353

Query:   192 IALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRLKR 251
             I+LINV   TP PSL+FL ++TLLL+ I+DV+ LINY ++VE+ FTL SV+GLLW+R K+
Sbjct:   354 ISLINVNCLTPVPSLIFLGVLTLLLLFIEDVYVLINYVSYVEALFTLISVSGLLWMRYKQ 413

Query:   252 PDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKDKP 311
             P  +RPIKV++ LPI + I+  FLV       P+ VGIG ++ILSGIPVY + ++   KP
Sbjct:   414 PKTERPIKVNLALPIIYLIVCLFLVIFSCTQTPYVVGIGTIIILSGIPVYYLTIH---KP 470

Query:   312 -RWL 314
              +WL
Sbjct:   471 VKWL 474
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS;TAS
GO:0006865 "amino acid transport" evidence=TAS
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0060356 "leucine import" evidence=IMP
FB|FBgn0039487 gb "genderblind" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q7YQK4 SLC7A5 "Large neutral amino acids transporter small subunit 1" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-586 slc7a8b "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TU26 LAT "Blood-brain barrier large neutral amino acid transporter" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q01650 SLC7A5 "Large neutral amino acids transporter small subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PH98 SLC7A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1298205 Slc7a5 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYX6 SLC7A8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1355323 Slc7a8 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 1e-114
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 5e-29
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 2e-26
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 6e-21
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 5e-16
pfam00324473 pfam00324, AA_permease, Amino acid permease 1e-13
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 3e-10
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 6e-10
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 2e-09
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 3e-09
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 1e-06
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 3e-06
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 5e-06
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 7e-06
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 7e-06
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 2e-05
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 4e-04
PRK10580457 PRK10580, proY, putative proline-specific permease 7e-04
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 0.001
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 0.002
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information 
 Score =  342 bits (879), Expect = e-114
 Identities = 151/306 (49%), Positives = 216/306 (70%), Gaps = 2/306 (0%)

Query: 12  LLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIA--HPMQNSNWDP 69
           LLT +NC +VKW TR+QD+FTA K+LAL  I+I G   L  G  E++   +  + +    
Sbjct: 175 LLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSA 234

Query: 70  GYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVL 129
           G + L+FYSG+++Y GWNYLNFVTEE+KNPY+ LP AI +SMP+ T +Y+L N+AYF VL
Sbjct: 235 GGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294

Query: 130 SKEELLSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLP 189
           S EELL+S  VAV FG ++L +++W MP  V  S FG++NG++F+SSRLFFVG R GHLP
Sbjct: 295 SPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLP 354

Query: 190 KAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSVTGLLWLRL 249
             +++I+VKR TP PSL+ +C +TLL++   D+++LIN  +F    F   +V GLLWLR 
Sbjct: 355 SLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRY 414

Query: 250 KRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWEVGIGLLMILSGIPVYMVFVYWKD 309
           KRP++ RPIKV +  P+ F +   FL+ L +Y  P   G+G +++L+G+PVY   V+W++
Sbjct: 415 KRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQN 474

Query: 310 KPRWLN 315
           KP+W  
Sbjct: 475 KPKWFR 480

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
KOG1287|consensus479 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
KOG1286|consensus554 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
KOG1289|consensus550 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
KOG2082|consensus 1075 99.93
KOG1288|consensus 945 99.93
KOG2083|consensus 643 99.78
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.71
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.69
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.1
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.93
TIGR00814397 stp serine transporter. The HAAAP family includes 98.79
PRK10483414 tryptophan permease; Provisional 98.68
PRK15132403 tyrosine transporter TyrP; Provisional 98.61
PRK09664415 tryptophan permease TnaB; Provisional 98.41
COG0814415 SdaC Amino acid permeases [Amino acid transport an 98.31
PRK13629443 threonine/serine transporter TdcC; Provisional 98.13
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.91
PRK11375484 allantoin permease; Provisional 97.73
KOG1304|consensus449 97.72
PF03845320 Spore_permease: Spore germination protein; InterPr 97.72
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.61
PHA02764399 hypothetical protein; Provisional 97.49
PLN03074473 auxin influx permease; Provisional 97.44
COG3949349 Uncharacterized membrane protein [Function unknown 97.44
COG1457442 CodB Purine-cytosine permease and related proteins 97.42
PRK15433439 branched-chain amino acid transport system 2 carri 97.27
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.13
KOG1303|consensus437 97.08
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 96.76
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.59
PRK11017404 codB cytosine permease; Provisional 96.56
PRK15419502 proline:sodium symporter PutP; Provisional 96.52
PTZ00206467 amino acid transporter; Provisional 96.31
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.29
PRK09442483 panF sodium/panthothenate symporter; Provisional 96.29
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 96.21
KOG1305|consensus411 96.21
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.04
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 95.83
PF1390651 AA_permease_C: C-terminus of AA_permease 95.82
PLN00148 785 potassium transporter; Provisional 95.67
PLN00151 852 potassium transporter; Provisional 95.58
TIGR00835425 agcS amino acid carrier protein. Members of the AG 95.52
PRK10745 622 trkD potassium transport protein Kup; Provisional 95.18
PLN00149 779 potassium transporter; Provisional 95.14
PF01566358 Nramp: Natural resistance-associated macrophage pr 94.94
PLN00150 779 potassium ion transporter family protein; Provisio 94.17
COG0733439 Na+-dependent transporters of the SNF family [Gene 93.68
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 92.57
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 92.39
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 91.85
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 91.63
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 90.88
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 90.86
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 90.81
PF12794340 MscS_TM: Mechanosensitive ion channel inner membra 90.33
TIGR00813407 sss transporter, SSS family. have different number 90.22
PRK10484523 putative transporter; Provisional 90.2
PRK00701439 manganese transport protein MntH; Reviewed 88.51
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 85.24
COG4858226 Uncharacterized membrane-bound protein conserved i 82.38
>KOG1287|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.2e-48  Score=362.15  Aligned_cols=333  Identities=50%  Similarity=0.874  Sum_probs=315.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC-CCCCCCChhhHHHHHHHHhH
Q psy9213           3 YTLFILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHP-MQNSNWDPGYVALSFYSGLF   81 (378)
Q Consensus         3 ~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   81 (378)
                      -+++.+++++++.+|+.++|+..++|.++++.|+++++++++.|+.....++.+|+.++ ++++..+.+.+..++....|
T Consensus       136 ~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglf  215 (479)
T KOG1287|consen  136 KLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLF  215 (479)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhh
Confidence            36788999999999999999999999999999999999999999998888888887765 88888888889999999999


Q ss_pred             hccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHHhhhhhhhhHHHHHHH
Q psy9213          82 SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVS  161 (378)
Q Consensus        82 ~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (378)
                      +|.|||.....+||+|||+||+|||+..++.++++.|+++.++....+++|++.+++..+..++++.+|.+.+++.+.+.
T Consensus       216 a~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~Va  295 (479)
T KOG1287|consen  216 AFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVA  295 (479)
T ss_pred             cccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy9213         162 CSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLLLMCIDDVFALINYATFVESSFTLTSV  241 (378)
Q Consensus       162 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~  241 (378)
                      ++++++.|+.+++.||.++++||+|++|+.|++.|+|+.+|..++++.+..++++.+.+|++++++..++..++.+.+..
T Consensus       296 lS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~  375 (479)
T KOG1287|consen  296 LSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSM  375 (479)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999777799999999999999999999999999999999999999999


Q ss_pred             HHHhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhcCccc-chHHHHHHHHHHHHHHHHhhhheeecCCcchhhhhhh
Q psy9213         242 TGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVK-PWEVGIGLLMILSGIPVYMVFVYWKDKPRWLNNIAVF  320 (378)
Q Consensus       242 ~~~~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (378)
                      ++++++|+|+|+.+||+|.|...|++.++.++++++.+...+ +....+++..++.|+.+|+...++++|++|.+...++
T Consensus       376 ~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~  455 (479)
T KOG1287|consen  376 AGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISES  455 (479)
T ss_pred             HHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhHH
Confidence            999999999999999999999999999999999999999888 5668899999999999999999999999999999999


Q ss_pred             hhcccCCCccchhhhhhhhhhhh
Q psy9213         321 IGSRMVGTTTRNMQQARNMMGKL  343 (378)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~  343 (378)
                      .        ++..|++.+..++.
T Consensus       456 i--------t~~~q~l~~~v~~~  470 (479)
T KOG1287|consen  456 I--------TRVCQKLFNVVPDE  470 (479)
T ss_pred             H--------HHHHHHHHHhcCcc
Confidence            9        88999988887664

>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>KOG1286|consensus Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1289|consensus Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG2082|consensus Back     alignment and domain information
>KOG1288|consensus Back     alignment and domain information
>KOG2083|consensus Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1304|consensus Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>KOG1305|consensus Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1 Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 4e-09
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 2e-08
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Query: 11  SLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQN-SNWDP 69
           +  TA+N +  K V R +      K+L LG  + AG+  +         HP     +  P
Sbjct: 134 AFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---------HPSYVIPDLAP 184
Query: 70  GYVA-LSFYSGLF--SYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYF 126
             V+ + F S +F  SY G+  +   +E ++NP KN+P+AI +S+ +   VY+ V ++  
Sbjct: 185 SAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAI 244
Query: 127 VVLSKEELLSSNTVAVTFGAKILPMLTWLMPLFVSC----STFGALNGAIFASSRLFFVG 182
             L  +EL+ ++  A+   AK  P L  L  L +S     S   A+N  I+  + + +  
Sbjct: 245 GNLPIDELIKASENALAVAAK--PFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302
Query: 183 ARNGHLPK 190
           A++G LP+
Sbjct: 303 AKDGELPE 310
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 9e-38
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-29
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
 Score =  140 bits (354), Expect = 9e-38
 Identities = 48/315 (15%), Positives = 110/315 (34%), Gaps = 19/315 (6%)

Query: 7   ILLESLLTAINCYNVKWVTRLQDVFTATKMLALGGIVIAGMWFLAMGNTENIAHPMQNSN 66
           +++  +   +N    K +TR+Q V T   ++ + GI + G ++          +      
Sbjct: 130 VVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGT 189

Query: 67  WDPGYVALSFYSGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYF 126
           +  G +  +    L+S+ G    +     +KNP +N+P A    + ++ + Y+L   A  
Sbjct: 190 F--GAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIM 247

Query: 127 VVLSKEEL-LSSNTVAVTFGAKILPMLTWLMPLFVSCSTFGALNGAIFASSRLFFVGARN 185
            ++    L +S++         +      ++    +    G+L G    + +     A +
Sbjct: 248 GMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307

Query: 186 GHLPKAIALINVKRYTPCPSLVFLCIITLLLMCI-------DDVFALINYATFVESSFTL 238
           G  P   A +N K  TP   L+ + I+  +            +   + + +        L
Sbjct: 308 GLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYL 366

Query: 239 TSVTGLLWLRLKRPDLKRPIKVSIILPITFFIIAAFLVTLPMYVKPWE-VGIGLLMILSG 297
            +   LL L        RP    + +    F+   +     +     + V    + ++  
Sbjct: 367 YTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIWA----VVGSGAKEVMWSFVTLMVI 420

Query: 298 IPVYMVFVYWKDKPR 312
             +Y    Y +    
Sbjct: 421 TAMY-ALNYNRLHKN 434
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.24
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.2
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 94.76
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 93.93
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
Probab=100.00  E-value=1.5e-37  Score=306.16  Aligned_cols=279  Identities=18%  Similarity=0.218  Sum_probs=215.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCCCCCC---CCCCCCCChhhHHHHHH
Q psy9213           2 EYTLFILLESLLTAINCYNVKWVTRLQDVFTATKML-ALGGIVIAGMWFLAMGNTENIAH---PMQNSNWDPGYVALSFY   77 (378)
Q Consensus         2 ~~~~~~~~~~~~~~ln~~g~~~~~~~~~~~~~~~i~-~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   77 (378)
                      .++++++++++.+.+|++|+|.+++++.+.++++++ .++++++.++.....+++.++..   ++.+. .+..+.+.++.
T Consensus       130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  208 (511)
T 4djk_A          130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPD-FSKVGTLVVFV  208 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCC-TTSTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCC-cccchHHHHHH
Confidence            356788899999999999999999999999888654 46666666666544443322211   11111 11122345567


Q ss_pred             HHhHhccChhhHHhhhhhhhCccccchhHHHhHHHHHHHHHHHHHHHHHhcCChhhhhcchhHHHHHHH--hhh----hh
Q psy9213          78 SGLFSYSGWNYLNFVTEELKNPYKNLPKAICVSMPLSTIVYLLVNVAYFVVLSKEELLSSNTVAVTFGA--KIL----PM  151 (378)
Q Consensus        78 ~~~~~~~G~e~~~~~a~E~knP~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~----~~  151 (378)
                      ..+|+|.|+|++++++||+|||+|++|||+..++.++.++|++..++.....|+++...+++....+..  ...    ++
T Consensus       209 ~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  288 (511)
T 4djk_A          209 AFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEW  288 (511)
T ss_dssp             HHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTT
T ss_pred             HHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchH
Confidence            789999999999999999999999999999999999999999999999999998887655444333221  122    34


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCChhHhhhhcCCCCCchhHHHHHHHHHHH-HHhhh--------hH
Q psy9213         152 LTWLMPLFVSCSTFGALNGAIFASSRLFFVGARNGHLPKAIALINVKRYTPCPSLVFLCIITLL-LMCID--------DV  222 (378)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~k~~~P~~ai~~~~~~~~i-~~~~~--------~~  222 (378)
                      ...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+| |+++|+++++++..+..+ +...+        .+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f  367 (511)
T 4djk_A          289 TVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSF  367 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            567888899999999999999999999999999999999999999 689999999998554333 33332        26


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhcCcc
Q psy9213         223 FALINYATFVESSFTLTSVTGLLWLRLKRPDLKRPIKVSI------ILPITFFIIAAFLVTLPMYV  282 (378)
Q Consensus       223 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~  282 (378)
                      +.+.++.++..+++|.+.+++++++|+|+++.+||||.|.      .+++++++.+++.++...++
T Consensus       368 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  433 (511)
T 4djk_A          368 LIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLP  433 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeC
Confidence            6799999999999999999999999999988889999982      36677777777776665444
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 94.43
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.43  E-value=1.7  Score=39.42  Aligned_cols=39  Identities=10%  Similarity=0.115  Sum_probs=23.8

Q ss_pred             hhhHHHHHHHHhHhc-cChhhHHhhhhhhhCccccchhHHH
Q psy9213          69 PGYVALSFYSGLFSY-SGWNYLNFVTEELKNPYKNLPKAIC  108 (378)
Q Consensus        69 ~~~~~~~~~~~~~~~-~G~e~~~~~a~E~knP~k~ip~ai~  108 (378)
                      ..-+..+...++|++ .|+.....++.=.|+ +.|+.|-..
T Consensus       237 ~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~  276 (509)
T d2a65a1         237 PGVWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGL  276 (509)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHH
T ss_pred             hHHHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccce
Confidence            344667888888887 566666666654443 345555433