Psyllid ID: psy9216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MVKKKADSAAGREPKLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHEEEEEcEEEEEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccEEEEEEEEEHcEEEEEEEEEccccEEEccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvkkkadsaagrepklvsaledptsqdnlvpgsnvpdnkIRLQKELGLMDGVAMIVGVIVGSgifvspigvlknagspGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAvnaldfgsggww
Flexible Loop (DISEMBL)
mvkkkadsaagrepklvsaledptsqdnlvpgsnvpdNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW
Low Complexity Region (SEG)
MVKKKADSAAGREPKLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDgvamivgvivgsgifvspigvLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW
Disordered region (IsUnstruct)
***************************************IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW*
Disordered Region (DISOPRED)
**********************************************GLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW
Disordered Region (DISEMBL)
**************KLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW
Disordered Region (DISPRO)
*************************************NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKKKADSAAGREPKLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q01650	507	Large neutral amino acids	yes	N/A	0.504	0.124	0.650	7e-18
Q8MH63	180	Putative L-type amino aci	no	N/A	0.656	0.455	0.554	8e-18
Q9Z127	512	Large neutral amino acids	yes	N/A	0.504	0.123	0.634	1e-17
Q7YQK4	503	Large neutral amino acids	yes	N/A	0.504	0.125	0.634	1e-17
Q63016	512	Large neutral amino acids	yes	N/A	0.504	0.123	0.634	1e-17
Q8BGK6	515	Y+L amino acid transporte	no	N/A	0.856	0.207	0.440	1e-16
Q28I80	514	Y+L amino acid transporte	no	N/A	0.56	0.136	0.557	3e-16
Q9UHI5	535	Large neutral amino acids	no	N/A	0.504	0.117	0.634	5e-16
Q5RAE3	535	Large neutral amino acids	no	N/A	0.504	0.117	0.634	5e-16
Q9WVR6	533	Large neutral amino acids	no	N/A	0.504	0.118	0.634	6e-16

>sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter small subunit 1 OS=Homo sapiens GN=SLC7A5 PE=1 SV=2

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 52/63 (82%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + LQ+ + L++GVA+IVG I+GSGIFV+P GVLK AGSPGLAL+VW   G  S++GALCY
Sbjct: 44  VTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLALVVWAACGVFSIVGALCY 103

Query: 100 AEL 102
           AEL
Sbjct: 104 AEL 106

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane in tissues such as placenta. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. May play an important role in high-grade gliomas. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.
Homo sapiens (taxid: 9606)

>sp|Q8MH63|LAT1N_HUMAN Putative L-type amino acid transporter 1-like protein MLAS OS=Homo sapiens GN=SLC7A5P1 PE=5 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + LQ+ + L++GVA+IVG I+GSGIFV+P GVLK AGSPGLAL++W   G  S++GALCY
Sbjct: 44  VTLQRNITLLNGVAIIVGAIIGSGIFVTPTGVLKEAGSPGLALVMWAACGVFSIVGALCY 103

Query: 100 AELVEKICHLSGAAVNALD-FGS 121
           AEL   I    G     LD +GS
Sbjct: 104 AELGTTISKSGGDYAYMLDVYGS 126

Homo sapiens (taxid: 9606)

>sp|Q9Z127|LAT1_MOUSE Large neutral amino acids transporter small subunit 1 OS=Mus musculus GN=Slc7a5 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 53/63 (84%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + LQ+ + L++GVA+IVG I+GSGIFV+P GVLK AGSPGL+L+VW + G  S++GALCY
Sbjct: 45  VTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCY 104

Query: 100 AEL 102
           AEL
Sbjct: 105 AEL 107

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Mus musculus (taxid: 10090)

>sp|Q7YQK4|LAT1_RABIT Large neutral amino acids transporter small subunit 1 OS=Oryctolagus cuniculus GN=SLC7A5 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 53/63 (84%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + LQ+ + L++GVA+IVG I+GSGIFV+P GVLK AGSPGL+L+VW + G  S++GALCY
Sbjct: 40  VALQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCY 99

Query: 100 AEL 102
           AEL
Sbjct: 100 AEL 102

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q63016|LAT1_RAT Large neutral amino acids transporter small subunit 1 OS=Rattus norvegicus GN=Slc7a5 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 53/63 (84%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + LQ+ + L++GVA+IVG I+GSGIFV+P GVLK AGSPGL+L+VW + G  S++GALCY
Sbjct: 45  VTLQRNITLINGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCY 104

Query: 100 AEL 102
           AEL
Sbjct: 105 AEL 107

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Rattus norvegicus (taxid: 10116)

>sp|Q8BGK6|YLAT2_MOUSE Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)

Query: 16  LVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNA 75
           L  A +    +D   P    P+  ++L+KE+ L++GV+++VG ++GSGIFVSP GVLK  
Sbjct: 16  LPKANQHTVKEDAGSPSQGSPET-MQLKKEISLLNGVSLVVGNMIGSGIFVSPKGVLKYT 74

Query: 76  GSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW 124
            S GL+LIVW + G  S++GALCYAEL   I   SGA+   +    GG+
Sbjct: 75  ASYGLSLIVWAIGGLFSVVGALCYAELGTTITK-SGASYAYILEAFGGF 122

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial cells.

Mus musculus (taxid: 10090)

>sp|Q28I80|YLAT2_XENTR Y+L amino acid transporter 2 OS=Xenopus tropicalis GN=slc7a6 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 55/70 (78%)

Query: 33  SNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALS 92
           S  P + ++L+KE+ L++GV++IVG ++GSGIFVSP GVL  + S GL+LI+W + G  S
Sbjct: 27  SKDPQDTMQLKKEISLLNGVSLIVGNMIGSGIFVSPKGVLIYSASYGLSLILWSLGGIFS 86

Query: 93  MIGALCYAEL 102
           +IGALCYAEL
Sbjct: 87  VIGALCYAEL 96

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus tropicalis (taxid: 8364)

>sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 54/63 (85%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + L+KE+GL+    +IVG I+GSGIFVSP GVL+NAGS GLALIVW+++G ++++GALCY
Sbjct: 34  VALKKEIGLVSACGIIVGNIIGSGIFVSPKGVLENAGSVGLALIVWIVTGFITVVGALCY 93

Query: 100 AEL 102
           AEL
Sbjct: 94  AEL 96

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Homo sapiens (taxid: 9606)

>sp|Q5RAE3|LAT2_PONAB Large neutral amino acids transporter small subunit 2 OS=Pongo abelii GN=SLC7A8 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 54/63 (85%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + L+KE+GL+    +IVG I+GSGIFVSP GVL+NAGS GLALIVW+++G ++++GALCY
Sbjct: 34  VALKKEIGLVSACGIIVGNIIGSGIFVSPKGVLENAGSVGLALIVWIVTGFITVVGALCY 93

Query: 100 AEL 102
           AEL
Sbjct: 94  AEL 96

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Pongo abelii (taxid: 9601)

>sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 53/63 (84%)

Query: 40  IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY 99
           + L+KE+GL+    +IVG I+GSGIFVSP GVL+NAGS GLALIVW+++G ++ +GALCY
Sbjct: 35  VALKKEIGLVSACGIIVGNIIGSGIFVSPKGVLENAGSVGLALIVWIVTGVITAVGALCY 94

Query: 100 AEL 102
           AEL
Sbjct: 95  AEL 97

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
340712486	489	PREDICTED: large neutral amino acids tra	0.56	0.143	0.685	5e-20
350399823	489	PREDICTED: large neutral amino acids tra	0.552	0.141	0.695	7e-20
242007493	494	large neutral amino acids transporter, p	0.544	0.137	0.735	9e-20
427793519	568	Putative amino acid transporter, partial	0.8	0.176	0.514	2e-19
66550796	489	PREDICTED: large neutral amino acids tra	0.528	0.134	0.746	2e-19
307184182	490	Large neutral amino acids transporter sm	0.672	0.171	0.607	3e-19
307205380	496	Large neutral amino acids transporter sm	0.528	0.133	0.727	7e-19
91083729	486	PREDICTED: similar to amino acids transp	0.528	0.135	0.712	7e-19
332025781	490	Large neutral amino acids transporter sm	0.696	0.177	0.562	9e-19
157103807	506	amino acids transporter [Aedes aegypti]	0.56	0.138	0.714	1e-18

>gi|340712486|ref|XP_003394790.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus terrestris]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/70 (68%), Positives = 62/70 (88%)

Query: 33  SNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALS 92
           +N  ++ ++L+KELGL+DGVA+IVG+IVG+GIFVSP GVL+N+GS G ALIVW+ SG LS
Sbjct: 19  NNHENDAVKLKKELGLLDGVAIIVGIIVGAGIFVSPKGVLENSGSVGQALIVWIFSGVLS 78

Query: 93  MIGALCYAEL 102
           +IGALCYAEL
Sbjct: 79  LIGALCYAEL 88

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399823|ref|XP_003485650.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus impatiens]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 61/69 (88%)

Query: 34  NVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSM 93
           N  ++ ++L+KELGL+DGVA+IVG+IVG+GIFVSP GVL+N+GS G ALIVW+ SG LS+
Sbjct: 20  NHENDAVKLKKELGLLDGVAIIVGIIVGAGIFVSPKGVLENSGSVGQALIVWIFSGVLSL 79

Query: 94  IGALCYAEL 102
           IGALCYAEL
Sbjct: 80  IGALCYAEL 88

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007493|ref|XP_002424574.1| large neutral amino acids transporter, putative [Pediculus humanus corporis] gi|212508017|gb|EEB11836.1| large neutral amino acids transporter, putative [Pediculus humanus corporis]

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/68 (73%), Positives = 59/68 (86%)

Query: 35  VPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMI 94
           V +  IRL+KE+GL DGVA+IVGVI+GSGIFVSP GVL  AGS G+ALI+WV+SG LS+I
Sbjct: 27  VVEGSIRLKKEIGLFDGVAIIVGVIIGSGIFVSPQGVLIRAGSVGIALIIWVLSGLLSLI 86

Query: 95  GALCYAEL 102
           GALCYAEL
Sbjct: 87  GALCYAEL 94

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427793519|gb|JAA62211.1| Putative amino acid transporter, partial [Rhipicephalus pulchellus]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 3   KKKADSAAGREPKLVSALEDPTSQDNLVPGSNVPD-NKIRLQKELGLMDGVAMIVGVIVG 61
           ++ A +    EP   S L +P  Q      +  P  N + L+KELGLM+GV MIVGVI+G
Sbjct: 64  RRLAATTMPPEPSAESQLMNPDVQVRRGSNAESPKGNSVTLKKELGLMNGVGMIVGVIIG 123

Query: 62  SGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAEL 102
           +GIFVSP GVL+ AGS G+AL+VW   G +SM+GA+CYAEL
Sbjct: 124 AGIFVSPTGVLRYAGSTGMALVVWAACGLISMVGAMCYAEL 164

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66550796|ref|XP_395404.2| PREDICTED: large neutral amino acids transporter small subunit 2-like [Apis mellifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 61/67 (91%), Gaps = 1/67 (1%)

Query: 37  DNK-IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIG 95
           DNK ++L+KELGL+DGVA+IVG+IVG+GIFVSP GVL+N+GS G ALIVW+ SG LS+IG
Sbjct: 22  DNKAVKLKKELGLLDGVAIIVGIIVGAGIFVSPKGVLENSGSVGQALIVWIFSGVLSLIG 81

Query: 96  ALCYAEL 102
           ALCYAEL
Sbjct: 82  ALCYAEL 88

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184182|gb|EFN70702.1| Large neutral amino acids transporter small subunit 2 [Camponotus floridanus]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 65/84 (77%)

Query: 19  ALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSP 78
           A  + T   +++ G +  +  I+L+KELGL DGVA+IVG+IVG+GIFVSP GVL N+GS 
Sbjct: 6   APAEKTVPRSVIAGPDSGNEGIKLKKELGLWDGVAIIVGIIVGAGIFVSPKGVLLNSGSV 65

Query: 79  GLALIVWVMSGALSMIGALCYAEL 102
           G ALIVW+ SG LS+IGALCYAEL
Sbjct: 66  GQALIVWIFSGILSLIGALCYAEL 89

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205380|gb|EFN83721.1| Large neutral amino acids transporter small subunit 2 [Harpegnathos saltator]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 59/66 (89%)

Query: 37  DNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGA 96
           D  ++L+KELGL+DGVA+IVG+IVG+GIFVSP GVL+N+GS G ALI+WV SG LS+IGA
Sbjct: 30  DQGVKLKKELGLLDGVAIIVGIIVGAGIFVSPKGVLENSGSVGQALIIWVFSGILSLIGA 89

Query: 97  LCYAEL 102
           LCYAEL
Sbjct: 90  LCYAEL 95

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083729|ref|XP_970665.1| PREDICTED: similar to amino acids transporter [Tribolium castaneum] gi|270006804|gb|EFA03252.1| hypothetical protein TcasGA2_TC013186 [Tribolium castaneum]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 60/66 (90%)

Query: 37  DNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGA 96
            ++++++KEL L+DGVA+IVGVI+GSGIFVSP GVL+N+GS G ALIVW++SG LSMIGA
Sbjct: 18  HSEVKMKKELALIDGVAIIVGVIIGSGIFVSPKGVLRNSGSVGQALIVWILSGILSMIGA 77

Query: 97  LCYAEL 102
           LCYAEL
Sbjct: 78  LCYAEL 83

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025781|gb|EGI65938.1| Large neutral amino acids transporter small subunit 2 [Acromyrmex echinatior]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 67/96 (69%), Gaps = 9/96 (9%)

Query: 7   DSAAGREPKLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFV 66
           D  A  E  ++S  +D  S           D  I+L+KELGL +GVA+IVG+IVG+GIFV
Sbjct: 3   DKVAPAEKSVLSQSKDARSNS---------DEGIKLKKELGLWNGVAIIVGIIVGAGIFV 53

Query: 67  SPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAEL 102
           SP GVL+N+GS G ALIVW+ SG LS+IGALCYAEL
Sbjct: 54  SPKGVLRNSGSVGQALIVWIFSGILSLIGALCYAEL 89

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103807|ref|XP_001648140.1| amino acids transporter [Aedes aegypti] gi|108869341|gb|EAT33566.1| AAEL014161-PA [Aedes aegypti]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 60/70 (85%)

Query: 33  SNVPDNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALS 92
           S+  D  I+L+KELGLMDGVA+IVGVIVG+GIFVSP GVL  +GS G A+IVW++SG LS
Sbjct: 37  SDSDDGGIKLKKELGLMDGVAIIVGVIVGAGIFVSPKGVLLYSGSIGQAIIVWILSGVLS 96

Query: 93  MIGALCYAEL 102
           M+GALCYAEL
Sbjct: 97  MVGALCYAEL 106

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
FB|FBgn0002778	499	mnd "minidiscs" [Drosophila me	0.64	0.160	0.387	4.7e-09
UNIPROTKB|Q8MH63	180	SLC7A5P1 "Putative L-type amin	0.656	0.455	0.361	1.6e-08
UNIPROTKB|Q9GIP4	190	SLC7A5P2 "Putative L-type amin	0.4	0.263	0.549	1.6e-08
UNIPROTKB|Q9TU26	505	LAT "Blood-brain barrier large	0.72	0.178	0.340	2.1e-08
UNIPROTKB|E9PLV9	289	SLC7A8 "Large neutral amino ac	0.504	0.217	0.412	5.4e-08
ZFIN|ZDB-GENE-030616-586	531	slc7a8b "solute carrier family	0.68	0.160	0.360	8e-08
UNIPROTKB|K7EK24	389	SLC7A10 "Asc-type amino acid t	0.632	0.203	0.353	1e-07
UNIPROTKB|E9PQT4	94	SLC7A8 "Large neutral amino ac	0.488	0.648	0.393	1.4e-07
UNIPROTKB|Q01650	507	SLC7A5 "Large neutral amino ac	0.928	0.228	0.325	1.6e-07
MGI|MGI:1298205	512	Slc7a5 "solute carrier family	0.72	0.175	0.329	1.6e-07

FB|FBgn0002778 mnd "minidiscs" [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 31/80 (38%), Positives = 43/80 (53%)

Query:    23 PTSQDNLVPGSNVPDNKIRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAGSPGLAL 82
             P   +N    S    + ++L+K++GL+D                     LK +GS G +L
Sbjct:    20 PAEPNNSTADSGSQGSGVKLKKQIGLLDGVAIIVGVIVGSGIFVSPKGVLKFSGSIGQSL 79

Query:    83 IVWVMSGALSMIGALCYAEL 102
             IVWV+SG LSM+GALCYAEL
Sbjct:    80 IVWVLSGVLSMVGALCYAEL 99

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS;TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

UNIPROTKB|Q8MH63 SLC7A5P1 "Putative L-type amino acid transporter 1-like protein MLAS" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 30/83 (36%), Positives = 40/83 (48%)

Query:    40 IRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAGSPGLALIVWVMSGALSMIGALCY 99
             + LQ+ + L++                     LK AGSPGLAL++W   G  S++GALCY
Sbjct:    44 VTLQRNITLLNGVAIIVGAIIGSGIFVTPTGVLKEAGSPGLALVMWAACGVFSIVGALCY 103

Query:   100 AELVEKICHLSGAAVNALD-FGS 121
             AEL   I    G     LD +GS
Sbjct:   104 AELGTTISKSGGDYAYMLDVYGS 126

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9GIP4 SLC7A5P2 "Putative L-type amino acid transporter 1-like protein IMAA" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/51 (54%), Positives = 32/51 (62%)

Query:    72 LKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD-FGS 121
             LK AGSPGLAL+VW   G  S++GALCYAEL   I    G     LD +GS
Sbjct:    76 LKEAGSPGLALVVWAACGVFSIVGALCYAELGTTISKSGGDYAYMLDVYGS 126

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9TU26 LAT "Blood-brain barrier large neutral amino acid transporter" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 31/91 (34%), Positives = 46/91 (50%)

Query:    32 GSNVPDNKIRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAGSPGLALIVWVMSGAL 91
             G++  + ++ LQ+ + L++                     LK AGSPGLAL+VW + G  
Sbjct:    34 GADGAEGEVTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLALVVWAVCGVF 93

Query:    92 SMIGALCYAELVEKICHLSGAAVNALD-FGS 121
             S++GALCYAEL   I    G     L+ +GS
Sbjct:    94 SIVGALCYAELGTTITKSGGDYAYMLEVYGS 124

GO:0015196 "L-tryptophan transmembrane transporter activity" evidence=IDA

GO:0015820 "leucine transport" evidence=IDA

GO:0015192 "L-phenylalanine transmembrane transporter activity" evidence=IDA

GO:0015190 "L-leucine transmembrane transporter activity" evidence=IDA

GO:0015823 "phenylalanine transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PLV9 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query:    40 IRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAGSPGLALIVWVMSGALSMIGALCY 99
             + L+KE+GL+                      L+NAGS GLALIVW+++G ++++GALCY
Sbjct:    34 VALKKEIGLVSACGIIVGNIIGSGIFVSPKGVLENAGSVGLALIVWIVTGFITVVGALCY 93

Query:   100 AEL 102
             AEL
Sbjct:    94 AEL 96

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030616-586 slc7a8b "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8b" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 31/86 (36%), Positives = 42/86 (48%)

Query:    18 SALEDPTSQDN-LVPGSNVPDNKIRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAG 76
             SA     S+D       N     + L+KE+GL+                      L+NA 
Sbjct:    10 SAAPSTASEDGGAADTGNTAGQSVALKKEIGLVSACGIIVGNIIGSGIFVSPKGVLENAS 69

Query:    77 SPGLALIVWVMSGALSMIGALCYAEL 102
             S GLALIVW+++G ++ IGALCYAEL
Sbjct:    70 SVGLALIVWILTGIITAIGALCYAEL 95

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|K7EK24 SLC7A10 "Asc-type amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/82 (35%), Positives = 44/82 (53%)

Query:    23 PTSQDNLVPGSNVP--DNKIRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAGSPGL 80
             P    + VPG+ VP    ++ L+KE+GL+                      L+++GS GL
Sbjct:    16 PAPSPSPVPGT-VPGASERVALKKEIGLLSACTIIIGNIIGSGIFISPKGVLEHSGSVGL 74

Query:    81 ALIVWVMSGALSMIGALCYAEL 102
             AL VWV+ G ++ +G+LCYAEL
Sbjct:    75 ALFVWVLGGGVTALGSLCYAEL 96

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PQT4 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query:    40 IRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAGSPGLALIVWVMSGALSMIGALCY 99
             + L+KE+GL+                      L+NAGS GLALIVW+++G ++++GALCY
Sbjct:    34 VALKKEIGLVSACGIIVGNIIGSGIFVSPKGVLENAGSVGLALIVWIVTGFITVVGALCY 93

Query:   100 A 100
             A
Sbjct:    94 A 94

GO:0016021 "integral to membrane" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q01650 SLC7A5 "Large neutral amino acids transporter small subunit 1" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 40/123 (32%), Positives = 53/123 (43%)

Query:     3 KKKADSAAGREPKLVSALED---PTSQDNLVPGSNVPDNKIRLQKELGLMDXXXXXXXXX 59
             K++A +A   E K   A E      S D   P        + LQ+ + L++         
Sbjct:     7 KRRALAAPAAEEK-EEAREKMLAAKSADGSAPAGE--GEGVTLQRNITLLNGVAIIVGTI 63

Query:    60 XXXXXXXXXXXXLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD- 118
                         LK AGSPGLAL+VW   G  S++GALCYAEL   I    G     L+ 
Sbjct:    64 IGSGIFVTPTGVLKEAGSPGLALVVWAACGVFSIVGALCYAELGTTISKSGGDYAYMLEV 123

Query:   119 FGS 121
             +GS
Sbjct:   124 YGS 126

GO:0007399 "nervous system development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0042605 "peptide antigen binding" evidence=ISS

GO:0006810 "transport" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

MGI|MGI:1298205 Slc7a5 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 5" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/91 (32%), Positives = 44/91 (48%)

Query:    32 GSNVPDNKIRLQKELGLMDXXXXXXXXXXXXXXXXXXXXXLKNAGSPGLALIVWVMSGAL 91
             G++     + LQ+ + L++                     LK AGSPGL+L+VW + G  
Sbjct:    37 GADPEGEGVTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVF 96

Query:    92 SMIGALCYAELVEKICHLSGAAVNALD-FGS 121
             S++GALCYAEL   I    G     L+ +GS
Sbjct:    97 SIVGALCYAELGTTISKSGGDYAYMLEVYGS 127

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IDA

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63016	LAT1_RAT	No assigned EC number	0.6349	0.504	0.1230	yes	N/A
Q7YQK4	LAT1_RABIT	No assigned EC number	0.6349	0.504	0.1252	yes	N/A
Q9Z127	LAT1_MOUSE	No assigned EC number	0.6349	0.504	0.1230	yes	N/A
Q01650	LAT1_HUMAN	No assigned EC number	0.6507	0.504	0.1242	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	125
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	7e-26
PRK11357	445	PRK11357, frlA, putative fructoselysine transporte	5e-08
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	5e-06
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	1e-05
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	5e-05
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	9e-05
TIGR00905	473	TIGR00905, 2A0302, transporter, basic amino acid/p	1e-04

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  100 bits (250), Expect = 7e-26
 Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query: 3   KKKADSAAGREPKLVSALEDPTSQDNLVPGSNVPDNKIRLQKELGLMDGVAMIVGVIVGS 62
           +     +     +  S+    +   + V G       + L+KE+ L+ GV +IVG I+GS
Sbjct: 5   RVFRSQSNATNYQFSSSGRKKSVSASTVDG----GEAVALKKEITLLSGVGIIVGTIIGS 60

Query: 63  GIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAEL 102
           GIFVSP GVLKNAGS GLALI+W + G  S++GAL YAEL
Sbjct: 61  GIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAEL 100

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 42  LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAE 101
           LQ++LG    +A+ VG  VGSGIFVS   V K AG+P L ++ +V+ G + +     YAE
Sbjct: 6   LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAE 65

Query: 102 L 102
           L
Sbjct: 66  L 66

Length = 445

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)

Query: 46  LGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVM--SGALSMIGALCYAEL 102
           L L+   A+++G I+GSGIFV+P+       S G A I+W    +   S+  AL YAEL
Sbjct: 1   LSLLSAFALVIGSIIGSGIFVTPL-----IASAGAAAILWGWIAALIFSLAVALVYAEL 54

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 42  LQKELGLMDGVAMI-VGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYA 100
           L+K+LGL D +  + VG ++GSGIF  P      AG    A++ W+++G + +  AL YA
Sbjct: 10  LKKKLGLFDLLTALGVGSMIGSGIFALP---GSAAGLAPAAILAWLIAGIIILFLALSYA 66

Query: 101 ELVEKICHLSGA 112
           EL   I    GA
Sbjct: 67  ELSSAIPSAGGA 78

Length = 466

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 41  RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYA 100
           ++++ L   D +A+ +G  +G+GI+V    V +N   P + ++ +++SG  +++   CYA
Sbjct: 25  KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAI-VLSFLISGLAAVLSGFCYA 83

Query: 101 E 101
           E
Sbjct: 84  E 84

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 6/63 (9%)

Query: 42  LQKELGLMDGVAMIVGVIVGSGIF-VSPIGVLKNAGSPGLALIV-WVMSGALSMIGALCY 99
           L +ELGL D   + +G ++G+GIF V+ I     AG  G A+I+ +V++G  ++  AL Y
Sbjct: 1   LSRELGLFDLTMLGIGAMIGTGIFVVTGIA----AGKAGPAVILSFVLAGLTALFIALVY 56

Query: 100 AEL 102
           AEL
Sbjct: 57  AEL 59

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 44  KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELV 103
           K+LGL    A+++G ++GSGIF  P   L +   PG  +I W+++G   +  A  +A L 
Sbjct: 7   KKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILA 65

Query: 104 EKICHLSG 111
            K   L G
Sbjct: 66  TKKPELDG 73

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PRK15049	499	L-asparagine permease; Provisional	99.72
TIGR00911	501	2A0308 L-type amino acid transporter.	99.69
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.69
KOG1287|consensus	479		99.67
PRK11387	471	S-methylmethionine transporter; Provisional	99.66
PRK10836	489	lysine transporter; Provisional	99.66
PRK10249	458	phenylalanine transporter; Provisional	99.65
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.65
PRK10238	456	aromatic amino acid transporter; Provisional	99.63
PRK10580	457	proY putative proline-specific permease; Provision	99.63
PRK10746	461	putative transport protein YifK; Provisional	99.62
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.62
KOG1289|consensus	550		99.61
PRK10644	445	arginine:agmatin antiporter; Provisional	99.6
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.59
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.58
PRK10655	438	potE putrescine transporter; Provisional	99.56
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.56
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.55
PRK11021	410	putative transporter; Provisional	99.54
TIGR00913	478	2A0310 amino acid permease (yeast).	99.54
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.48
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.47
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.46
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.41
TIGR00909	429	2A0306 amino acid transporter.	99.4
KOG1286|consensus	554		99.38
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.3
TIGR00930	953	2a30 K-Cl cotransporter.	99.19
PRK15238	496	inner membrane transporter YjeM; Provisional	99.18
PHA02764	399	hypothetical protein; Provisional	99.15
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.14
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.13
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.04
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.77
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.74
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.7
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	98.64
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.49
PF03845	320	Spore_permease: Spore germination protein; InterPr	97.26
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.1
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	97.04
PRK10483	414	tryptophan permease; Provisional	96.91
PRK09664	415	tryptophan permease TnaB; Provisional	96.81
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	96.54
TIGR00814	397	stp serine transporter. The HAAAP family includes	96.45
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	96.44
KOG1303|consensus	437		96.34
PRK13629	443	threonine/serine transporter TdcC; Provisional	95.62
PRK15132	403	tyrosine transporter TyrP; Provisional	95.53
PTZ00206	467	amino acid transporter; Provisional	93.98
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	93.86
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	93.51
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	93.05
PLN03074	473	auxin influx permease; Provisional	91.3
KOG1305|consensus	411		89.64

>PRK15049 L-asparagine permease; Provisional

Probab=99.72  E-value=2.5e-17  Score=131.24  Aligned_cols=83  Identities=19%  Similarity=0.191  Sum_probs=77.2

Q ss_pred             cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216          40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF  119 (125)
Q Consensus        40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~  119 (125)
                      +++||+++.+++.+++++.+||+|+|.+++..+..+|+.  .+++|+++++++++++++++||++++|.+||.| .|+++
T Consensus        24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~--~il~~li~~i~~~~v~~slaELas~~P~aGg~y-~y~~~  100 (499)
T PRK15049         24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA--LALVYLICGLFSFFILRALGELVLHRPSSGSFV-SYARE  100 (499)
T ss_pred             hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHHH
Confidence            459999999999999999999999999999999988874  567899999999999999999999999999997 99999


Q ss_pred             hhCCCC
Q psy9216         120 GSGGWW  125 (125)
Q Consensus       120 ~~G~~~  125 (125)
                      .+|+++
T Consensus       101 ~~G~~~  106 (499)
T PRK15049        101 FLGEKA  106 (499)
T ss_pred             HhCcHh
Confidence            999863

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.69  E-value=8.3e-17  Score=127.97  Aligned_cols=87  Identities=52%  Similarity=0.790  Sum_probs=79.9

Q ss_pred             cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216          38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL  117 (125)
Q Consensus        38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~  117 (125)
                      +++++||+++.+++++++++.++|+|+|..++.++..+|+.|..++.|++++++.++.+++++||++++|++||.| .|+
T Consensus        36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y-~~~  114 (501)
T TIGR00911        36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEY-NYI  114 (501)
T ss_pred             cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchh-hhH
Confidence            4567999999999999999999999999999998888887765667899999999999999999999999999997 999


Q ss_pred             HhhhCCCC
Q psy9216         118 DFGSGGWW  125 (125)
Q Consensus       118 ~~~~G~~~  125 (125)
                      ++.+|+++
T Consensus       115 ~~~~g~~~  122 (501)
T TIGR00911       115 LEVFGPLL  122 (501)
T ss_pred             HhHhCCHH
Confidence            99999863

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.69  E-value=6.3e-17  Score=128.00  Aligned_cols=89  Identities=16%  Similarity=0.046  Sum_probs=81.3

Q ss_pred             CCCCcccccccccChHHHHHHHhhch-hcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch
Q psy9216          34 NVPDNKIRLQKELGLMDGVAMIVGVI-VGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGA  112 (125)
Q Consensus        34 ~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~  112 (125)
                      .+.+++|||||+++.++.++++++.+ +++|++.+++..+...|+.  .++.|+++++.+++++++++||++++|++||+
T Consensus         3 ~~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~--~~~~~li~~i~~l~~als~aEL~s~~P~aGG~   80 (475)
T TIGR03428         3 QRFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA--FFWTWPVVFVGQLLVALNFAELAARYPISGAI   80 (475)
T ss_pred             hhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCH
Confidence            35789999999999999999999986 8999999999988887763  66789999999999999999999999999999


Q ss_pred             HhHhhHhhhCCCC
Q psy9216         113 AVNALDFGSGGWW  125 (125)
Q Consensus       113 y~~~~~~~~G~~~  125 (125)
                      | +|+++.+|+++
T Consensus        81 Y-~~~~~~~g~~~   92 (475)
T TIGR03428        81 Y-QWSRRMGGEVI   92 (475)
T ss_pred             H-HHHHHHcCccc
Confidence            8 99999999864

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>KOG1287|consensus

Probab=99.67  E-value=3.4e-17  Score=128.72  Aligned_cols=88  Identities=50%  Similarity=0.868  Sum_probs=82.9

Q ss_pred             CcccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHh
Q psy9216          37 DNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNA  116 (125)
Q Consensus        37 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~  116 (125)
                      +++.++||+++++..+++.++.+||+|+|..|..++..+|+.|..++.|++++++++..++||+||++++|.+||.| .|
T Consensus         5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~-ay   83 (479)
T KOG1287|consen    5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDY-AY   83 (479)
T ss_pred             cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcch-hh
Confidence            34567899999999999999999999999999999999999998888899999999999999999999999999997 99


Q ss_pred             hHhhhCCCC
Q psy9216         117 LDFGSGGWW  125 (125)
Q Consensus       117 ~~~~~G~~~  125 (125)
                      +.++||+.+
T Consensus        84 i~~afg~~~   92 (479)
T KOG1287|consen   84 ISEAFGPFP   92 (479)
T ss_pred             HHHHhccch
Confidence            999999874

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.66  E-value=2.4e-16  Score=124.59  Aligned_cols=83  Identities=14%  Similarity=0.270  Sum_probs=76.6

Q ss_pred             cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216          40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF  119 (125)
Q Consensus        40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~  119 (125)
                      ++|||+++.+++++++++.+||+|+|..++..+..+|+.+ .+++|++++++.++++++++||++++|++||.| .|+++
T Consensus        10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~-~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y-~y~~~   87 (471)
T PRK11387         10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAG-TLLAYLIGALVVYLVMQCLGELSVAMPETGAFH-VYAAR   87 (471)
T ss_pred             hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Confidence            4699999999999999999999999999999988888643 567899999999999999999999999999986 99999


Q ss_pred             hhCCC
Q psy9216         120 GSGGW  124 (125)
Q Consensus       120 ~~G~~  124 (125)
                      .+|++
T Consensus        88 ~~g~~   92 (471)
T PRK11387         88 YLGPA   92 (471)
T ss_pred             hcChH
Confidence            99985

>PRK10836 lysine transporter; Provisional

Probab=99.66  E-value=3.2e-16  Score=124.42  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=77.2

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD  118 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~  118 (125)
                      .+++||+++.++.+++++|.+||+|+|.+++..+..+|+. ..+++|+++++++++++++|+||++++|++||.| .|++
T Consensus        10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~-~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y-~y~~   87 (489)
T PRK10836         10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPG-GALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFA-TYGQ   87 (489)
T ss_pred             cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHH
Confidence            4579999999999999999999999999999999988863 3577899999999999999999999999999997 9999


Q ss_pred             hhhCCC
Q psy9216         119 FGSGGW  124 (125)
Q Consensus       119 ~~~G~~  124 (125)
                      +.+|+.
T Consensus        88 ~~~g~~   93 (489)
T PRK10836         88 NYVEEG   93 (489)
T ss_pred             HHcChH
Confidence            998875

>PRK10249 phenylalanine transporter; Provisional

Probab=99.65  E-value=2.5e-16  Score=124.23  Aligned_cols=84  Identities=17%  Similarity=0.148  Sum_probs=77.4

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD  118 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~  118 (125)
                      .+++||+++.+++..++++.+||+|+|.+++..+..+|+.  .+++|++++++.++++++++||++++|.+||.| .|++
T Consensus        16 ~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~--~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~-~y~~   92 (458)
T PRK10249         16 EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA--VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFA-HFAY   92 (458)
T ss_pred             chhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHH
Confidence            3479999999999999999999999999999999888863  667899999999999999999999999999987 9999


Q ss_pred             hhhCCCC
Q psy9216         119 FGSGGWW  125 (125)
Q Consensus       119 ~~~G~~~  125 (125)
                      +.+|+++
T Consensus        93 ~~~g~~~   99 (458)
T PRK10249         93 KYWGPFA   99 (458)
T ss_pred             HHhChHH
Confidence            9999853

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.65  E-value=3.6e-16  Score=122.64  Aligned_cols=86  Identities=33%  Similarity=0.400  Sum_probs=78.4

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD  118 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~  118 (125)
                      +++|||+++.++.++++++.++|+|+|..++.+....|+++..+++|++++++.++++++++||++++|.+||.| .|++
T Consensus         3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y-~y~~   81 (445)
T PRK11357          3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADY-VYLK   81 (445)
T ss_pred             cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCce-eeHH
Confidence            457999999999999999999999999999988877776655677899999999999999999999999999998 9999


Q ss_pred             hhhCCCC
Q psy9216         119 FGSGGWW  125 (125)
Q Consensus       119 ~~~G~~~  125 (125)
                      +.+|+++
T Consensus        82 ~~~g~~~   88 (445)
T PRK11357         82 NAGSRPL   88 (445)
T ss_pred             HhcCChh
Confidence            9999863

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.63  E-value=5.8e-16  Score=122.09  Aligned_cols=84  Identities=17%  Similarity=0.261  Sum_probs=77.4

Q ss_pred             cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216          38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL  117 (125)
Q Consensus        38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~  117 (125)
                      +..++||+++.++...++++.+||+|+|..++..+..+|+ + .++.|++++++.++++++++||++++|.+||.| .|+
T Consensus         6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~-~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y-~~~   82 (456)
T PRK10238          6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-G-IILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFS-HFA   82 (456)
T ss_pred             cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHH
Confidence            3447999999999999999999999999999999998886 3 677899999999999999999999999999987 999


Q ss_pred             HhhhCCC
Q psy9216         118 DFGSGGW  124 (125)
Q Consensus       118 ~~~~G~~  124 (125)
                      ++.+|++
T Consensus        83 ~~~~g~~   89 (456)
T PRK10238         83 YKYWGSF   89 (456)
T ss_pred             HHHcCcH
Confidence            9999985

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.63  E-value=6.6e-16  Score=121.64  Aligned_cols=86  Identities=20%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             CcccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHh
Q psy9216          37 DNKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNA  116 (125)
Q Consensus        37 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~  116 (125)
                      ++++++||+++.+++++++++.+||+|+|..++.....+|+.  .+++|++++++.++++++++||++++|.+||.| .|
T Consensus         2 ~~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~--~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y-~y   78 (457)
T PRK10580          2 ESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS--VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFS-RY   78 (457)
T ss_pred             CCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-HH
Confidence            345689999999999999999999999999999988887764  677899999999999999999999999999997 99


Q ss_pred             hHhhhCCCC
Q psy9216         117 LDFGSGGWW  125 (125)
Q Consensus       117 ~~~~~G~~~  125 (125)
                      +++.+|+++
T Consensus        79 ~~~~~G~~~   87 (457)
T PRK10580         79 AQENLGPLA   87 (457)
T ss_pred             HHHHcCcHH
Confidence            999999853

>PRK10746 putative transport protein YifK; Provisional

Probab=99.62  E-value=9.5e-16  Score=121.09  Aligned_cols=85  Identities=20%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216          38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL  117 (125)
Q Consensus        38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~  117 (125)
                      +++++||+++.+++..++++.+||+|+|..++..+..+|+.  .+++|++++++.++++++++||++++|++||.| .|+
T Consensus         4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~--~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~-~y~   80 (461)
T PRK10746          4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS--VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFA-VYA   80 (461)
T ss_pred             CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHH
Confidence            45679999999999999999999999999999999988863  667899999999999999999999999999987 999


Q ss_pred             HhhhCCCC
Q psy9216         118 DFGSGGWW  125 (125)
Q Consensus       118 ~~~~G~~~  125 (125)
                      ++.+|+++
T Consensus        81 ~~~~g~~~   88 (461)
T PRK10746         81 HRYMSPFF   88 (461)
T ss_pred             HHHhCcHH
Confidence            99999864

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.62  E-value=1.4e-15  Score=119.50  Aligned_cols=84  Identities=19%  Similarity=0.322  Sum_probs=77.4

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD  118 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~  118 (125)
                      +.++||+++.+++.+++++.+||+|+|.+++..+..+|+.  .+++|++++++.++++++++||++++|.+||.| .|++
T Consensus         7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~--~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~-~~~~   83 (452)
T TIGR01773         7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA--ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFS-TYAD   83 (452)
T ss_pred             hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHH
Confidence            4469999999999999999999999999999999888864  566899999999999999999999999999987 9999


Q ss_pred             hhhCCCC
Q psy9216         119 FGSGGWW  125 (125)
Q Consensus       119 ~~~G~~~  125 (125)
                      +.+|+++
T Consensus        84 ~~~g~~~   90 (452)
T TIGR01773        84 DAIGRWA   90 (452)
T ss_pred             HHhCcHH
Confidence            9999863

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>KOG1289|consensus

Probab=99.61  E-value=5.9e-16  Score=122.61  Aligned_cols=95  Identities=20%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             CCCCCCCCCcccccccccChHHHHHHHhhch-hcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9216          29 LVPGSNVPDNKIRLQKELGLMDGVAMIVGVI-VGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKIC  107 (125)
Q Consensus        29 ~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P  107 (125)
                      |.+.+.+.++||++||++++|+.++++++.+ .-.|+-.+...-+...|+++ .++.|+++++..+|++++++|++|.+|
T Consensus        33 d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~-~vwgwlIa~~~~i~va~slaEl~Sa~P  111 (550)
T KOG1289|consen   33 DEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPT-LVWGWLIAGFFSICVALSLAELCSAMP  111 (550)
T ss_pred             CHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHH-HHHHHHHHHHHHHHHHhHHHHHHhhCC
Confidence            3345667899999999999999999999988 44455554444444445432 455699999999999999999999999


Q ss_pred             CCCchHhHhhHhhhCCCC
Q psy9216         108 HLSGAAVNALDFGSGGWW  125 (125)
Q Consensus       108 ~~GG~y~~~~~~~~G~~~  125 (125)
                      ++||.| .|+...-+++|
T Consensus       112 tsGgLy-~waa~lap~k~  128 (550)
T KOG1289|consen  112 TSGGLY-FWAAVLAPPKY  128 (550)
T ss_pred             CCCcHH-HHHHHhcCcch
Confidence            999998 78777777664

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.60  E-value=2.3e-15  Score=118.10  Aligned_cols=83  Identities=22%  Similarity=0.336  Sum_probs=73.7

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD  118 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~  118 (125)
                      .++++|+++++++++++++.+||+|+|..++.+... |  ++.++.|+++++..++++++++||++++|++||+| .|++
T Consensus         3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g--~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y-~~~~   78 (445)
T PRK10644          3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-G--GIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSY-AYAR   78 (445)
T ss_pred             CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChh-HHHH
Confidence            345789999999999999999999999999886553 3  34667899999999999999999999999999998 9999


Q ss_pred             hhhCCCC
Q psy9216         119 FGSGGWW  125 (125)
Q Consensus       119 ~~~G~~~  125 (125)
                      +.+|+++
T Consensus        79 ~~~g~~~   85 (445)
T PRK10644         79 RCFGPFL   85 (445)
T ss_pred             HHcCchH
Confidence            9999863

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.59  E-value=2.3e-15  Score=121.51  Aligned_cols=84  Identities=23%  Similarity=0.459  Sum_probs=74.9

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHH-hhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLK-NAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL  117 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~-~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~  117 (125)
                      +++|+|+++.+++++++++.++|+|+|..++.... .+|+.  .+++|+++++.+++.+++|+||++++|.+||.| .|+
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~--~~ls~liagv~~l~~al~yaElas~~P~sGg~Y-~y~   99 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA--IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAY-LYS   99 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcce-eeH
Confidence            34699999999999999999999999999988764 45643  566799999999999999999999999999998 999


Q ss_pred             HhhhCCCC
Q psy9216         118 DFGSGGWW  125 (125)
Q Consensus       118 ~~~~G~~~  125 (125)
                      ++.+|+++
T Consensus       100 ~~~~G~~~  107 (557)
T TIGR00906       100 YVTVGELW  107 (557)
T ss_pred             HHHhCcHH
Confidence            99999863

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.58  E-value=5.3e-15  Score=117.04  Aligned_cols=88  Identities=20%  Similarity=0.121  Sum_probs=75.7

Q ss_pred             CCCcccccccccChHHHHHHHhhch-hcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Q psy9216          35 VPDNKIRLQKELGLMDGVAMIVGVI-VGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAA  113 (125)
Q Consensus        35 ~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y  113 (125)
                      +.+++++|||+++.++.++++++.+ ..+|++..........|+.+ .+++|++++++.++++++++||++++|++||+|
T Consensus         3 ~~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~-~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y   81 (482)
T TIGR00907         3 ALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMS-IVWGWIIAGAGSICIALSLAELSSAYPTSGGQY   81 (482)
T ss_pred             ccCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHH
Confidence            4688999999999999999999966 34688887776666666642 566899999999999999999999999999997


Q ss_pred             hHhhHhhhCCC
Q psy9216         114 VNALDFGSGGW  124 (125)
Q Consensus       114 ~~~~~~~~G~~  124 (125)
                       .|+++.+|++
T Consensus        82 -~~~~~~~g~~   91 (482)
T TIGR00907        82 -FWSAKLAPPR   91 (482)
T ss_pred             -HHHHHhcccc
Confidence             9999999864

>PRK10655 potE putrescine transporter; Provisional

Probab=99.56  E-value=7.2e-15  Score=115.00  Aligned_cols=81  Identities=17%  Similarity=0.279  Sum_probs=72.2

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG  120 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~  120 (125)
                      ++||++++++.++++++.+||+|+|..++... ..|+.  .++.|++++++.++++++++|+++++|.+||.| .|+++.
T Consensus         3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~--~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y-~y~~~~   78 (438)
T PRK10655          3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTI--SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMG-GYAEYA   78 (438)
T ss_pred             CccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchH-HHHHHH
Confidence            35789999999999999999999999988754 45543  567899999999999999999999999999997 999999


Q ss_pred             hCCCC
Q psy9216         121 SGGWW  125 (125)
Q Consensus       121 ~G~~~  125 (125)
                      +|+++
T Consensus        79 ~G~~~   83 (438)
T PRK10655         79 FGKSG   83 (438)
T ss_pred             cCcch
Confidence            99863

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.56  E-value=7.5e-15  Score=115.08  Aligned_cols=80  Identities=26%  Similarity=0.338  Sum_probs=70.7

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG  120 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~  120 (125)
                      +.+|++++++++++.++.+||+|+|.+|+... ..|+.  .+++|+++++..++++++++||++++|.+||.| .|+++ 
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~--~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y-~y~~~-   76 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSI--AIWGWIISIIGAMSLAYVYARLATKNPQQGGPI-AYAGE-   76 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChh-HHHHH-
Confidence            46799999999999999999999999998864 45542  566799999999999999999999999999987 99999 


Q ss_pred             hCCCC
Q psy9216         121 SGGWW  125 (125)
Q Consensus       121 ~G~~~  125 (125)
                      +|+++
T Consensus        77 ~g~~~   81 (435)
T PRK10435         77 ISPAF   81 (435)
T ss_pred             HCcHH
Confidence            78753

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.55  E-value=1.4e-14  Score=114.69  Aligned_cols=83  Identities=30%  Similarity=0.470  Sum_probs=73.8

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCchHhHhhHh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICH-LSGAAVNALDF  119 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~  119 (125)
                      +++|+++.++.++++++.++|+|+|..+.......|+ +..+++|++++++.++++++++|+++++|+ +||.| .|+++
T Consensus         4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~-~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y-~y~~~   81 (473)
T TIGR00905         4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGP-GAVIIGWIITGVGMLALAFVFAILATKKPELDGGIY-AYARE   81 (473)
T ss_pred             ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChh-hhHHh
Confidence            3478999999999999999999999999987765553 335678999999999999999999999999 99997 99999


Q ss_pred             hhCCCC
Q psy9216         120 GSGGWW  125 (125)
Q Consensus       120 ~~G~~~  125 (125)
                      .+||++
T Consensus        82 ~~G~~~   87 (473)
T TIGR00905        82 GFGPYI   87 (473)
T ss_pred             Hccccc
Confidence            999874

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11021 putative transporter; Provisional

Probab=99.54  E-value=2e-14  Score=111.71  Aligned_cols=77  Identities=26%  Similarity=0.431  Sum_probs=71.7

Q ss_pred             cChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216          46 LGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW  125 (125)
Q Consensus        46 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~  125 (125)
                      +++|+.+++.++.+||+|+|.+++.++..+|+.  .+++|++++++.++++++++||++++|++||.| .|+++.+|+++
T Consensus         1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~--~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y-~y~~~~~G~~~   77 (410)
T PRK11021          1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNN--SLWAWPLLILLIFPIAIVFARLGRHFPHAGGPA-HFVGMAFGPRL   77 (410)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HhHHHHhCchh
Confidence            578999999999999999999999999988864  677899999999999999999999999999997 99999999874

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.54  E-value=1.7e-14  Score=113.96  Aligned_cols=82  Identities=18%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216          43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSG  122 (125)
Q Consensus        43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G  122 (125)
                      ||+++.+++.+++++.+||+|+|.+++..+..+|+.+ .+++|++++++.++++++++||++++|++||+|+.|+++.+|
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~-~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g   79 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAG-LLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD   79 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence            6899999999999999999999999999998887542 466799999999999999999999999888888789999999


Q ss_pred             CCC
Q psy9216         123 GWW  125 (125)
Q Consensus       123 ~~~  125 (125)
                      +++
T Consensus        80 ~~~   82 (478)
T TIGR00913        80 PAF   82 (478)
T ss_pred             cHH
Confidence            853

>TIGR00908 2A0305 ethanolamine permease

Probab=99.48  E-value=9.4e-14  Score=108.82  Aligned_cols=85  Identities=18%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216          38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL  117 (125)
Q Consensus        38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~  117 (125)
                      +++++||+++.++.++++++.++| |.+......+...|+. ..++.|++++++.++++++++||++++|.+||.| .|+
T Consensus         1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~-~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y-~~~   77 (442)
T TIGR00908         1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWG-GFVVATLLVATMYLTFCFSLAELSTMIPTAGGGY-GFA   77 (442)
T ss_pred             CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-HHH
Confidence            367899999999999999999997 7777766656666653 2456799999999999999999999999999997 999


Q ss_pred             HhhhCCCC
Q psy9216         118 DFGSGGWW  125 (125)
Q Consensus       118 ~~~~G~~~  125 (125)
                      ++.+|+++
T Consensus        78 ~~~~G~~~   85 (442)
T TIGR00908        78 RRAFGPWG   85 (442)
T ss_pred             HHHhCcHH
Confidence            99999863

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.47  E-value=1.1e-13  Score=109.37  Aligned_cols=79  Identities=34%  Similarity=0.542  Sum_probs=71.2

Q ss_pred             cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHhHhhHhhhC
Q psy9216          44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLS-GAAVNALDFGSG  122 (125)
Q Consensus        44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~~G  122 (125)
                      |++++++++++.++.+||+|+|..++..+..+|+ +..+++|++++++.++++++++||++++|++| |.| .|+++.||
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~-~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y-~y~~~~fG   78 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAA-GAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVY-SYAKAGFG   78 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChh-hhHHhHcC
Confidence            6899999999999999999999999998887774 33566799999999999999999999999975 776 99999999


Q ss_pred             CC
Q psy9216         123 GW  124 (125)
Q Consensus       123 ~~  124 (125)
                      ++
T Consensus        79 ~~   80 (468)
T TIGR03810        79 PF   80 (468)
T ss_pred             cH
Confidence            86

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.46  E-value=1.6e-13  Score=108.58  Aligned_cols=83  Identities=17%  Similarity=0.265  Sum_probs=76.0

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD  118 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~  118 (125)
                      .++|||+++.++.+.++++.+||+|+|..++.++..+|+.  .+++|++++++.++++++++|+++..|..|+.| .|++
T Consensus        15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~--~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~-~ya~   91 (469)
T PRK11049         15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPS--IIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFS-DFAS   91 (469)
T ss_pred             chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHH
Confidence            3469999999999999999999999999999999888863  567899999999999999999999999998875 9999


Q ss_pred             hhhCCC
Q psy9216         119 FGSGGW  124 (125)
Q Consensus       119 ~~~G~~  124 (125)
                      +.+|++
T Consensus        92 ~~~g~~   97 (469)
T PRK11049         92 DLLGPW   97 (469)
T ss_pred             HHhCcH
Confidence            999985

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.41  E-value=6.2e-13  Score=105.69  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=74.4

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG  120 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~  120 (125)
                      +|||+|..+++..+++|..||+|.|...+..+..+||.| .+++|++.+++.+++..|++||+..+|++| .|..|..+.
T Consensus        41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g-~li~y~i~G~~vy~vm~sLGEma~~~P~sG-sF~~ya~rf  118 (541)
T COG0833          41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAG-LLIAYLIIGIMVYFVMQSLGELAVFYPVSG-SFSTYATRF  118 (541)
T ss_pred             hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-chhhhhhhh
Confidence            699999999999999999999999999999999999864 677899999999999999999999999764 477999988


Q ss_pred             hCC
Q psy9216         121 SGG  123 (125)
Q Consensus       121 ~G~  123 (125)
                      .++
T Consensus       119 vdp  121 (541)
T COG0833         119 VDP  121 (541)
T ss_pred             cCc
Confidence            765

>TIGR00909 2A0306 amino acid transporter

Probab=99.40  E-value=5e-13  Score=104.18  Aligned_cols=80  Identities=29%  Similarity=0.420  Sum_probs=73.1

Q ss_pred             cccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhh
Q psy9216          42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGS  121 (125)
Q Consensus        42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~  121 (125)
                      |||+++.++.+++.++.++|+|+|..++......|+.  .++.|+++++..++.+++++|+++++|.+||.| .|+++.+
T Consensus         1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~--~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y-~~~~~~~   77 (429)
T TIGR00909         1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA--VILSFVLAGLTALFIALVYAELAAMLPVAGSPY-TYAYEAM   77 (429)
T ss_pred             CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcce-eeHHHHh
Confidence            5899999999999999999999999999877766653  566799999999999999999999999999987 9999999


Q ss_pred             CCC
Q psy9216         122 GGW  124 (125)
Q Consensus       122 G~~  124 (125)
                      ||+
T Consensus        78 G~~   80 (429)
T TIGR00909        78 GEL   80 (429)
T ss_pred             CcH
Confidence            986

>KOG1286|consensus

Probab=99.38  E-value=1.1e-13  Score=111.52  Aligned_cols=85  Identities=22%  Similarity=0.357  Sum_probs=76.3

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CchHhHhh
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHL-SGAAVNAL  117 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~-GG~y~~~~  117 (125)
                      +++|||+++.+++.++++|.+||+|+|...+.++...|+++ .++.|+++++..++.++||+||+.++|.+ |+.| .|+
T Consensus        25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s-~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~-~ya  102 (554)
T KOG1286|consen   25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPS-LLISFIIAGIAALLSALCLGEFAVRFPVSAGSFY-TYA  102 (554)
T ss_pred             cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChh-HHHHHHHHHHHHHHHHHHHHHHheecccccccce-eee
Confidence            36899999999999999999999999999999998888652 45569999999999999999999999995 7765 999


Q ss_pred             HhhhCCCC
Q psy9216         118 DFGSGGWW  125 (125)
Q Consensus       118 ~~~~G~~~  125 (125)
                      ++.+|+.|
T Consensus       103 ~~~i~e~~  110 (554)
T KOG1286|consen  103 YRFVGESL  110 (554)
T ss_pred             eeeeCcHH
Confidence            99998754

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.30  E-value=2.2e-12  Score=101.52  Aligned_cols=69  Identities=19%  Similarity=0.351  Sum_probs=63.0

Q ss_pred             HHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216          54 MIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW  125 (125)
Q Consensus        54 ~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~  125 (125)
                      ++++.+||+|+|.+++..++.+|+.  .+++|++++++.++++++++||++++|++||.| .|+++.+|+++
T Consensus         2 ~~ig~~IGsGif~~~g~~~~~aG~~--~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y-~y~~~~~G~~~   70 (446)
T PRK10197          2 LSIAGVIGASLFVGSSVAIAEAGPA--VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFS-TYADKAIGRWA   70 (446)
T ss_pred             eeecchhHhHHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHcChHH
Confidence            5678999999999999999888853  677899999999999999999999999999987 99999999863

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.19  E-value=4.1e-11  Score=101.90  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=74.0

Q ss_pred             ccccccChHHHHHHH-hhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchHhHhhH
Q psy9216          41 RLQKELGLMDGVAMI-VGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEK-ICHLSGAAVNALD  118 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~-~P~~GG~y~~~~~  118 (125)
                      .-+|+++++..+.+- +..++|+++|..++.+...+|. +.+++.|+++++++++.++|++|+++. +|.+||.| .|++
T Consensus        73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~-~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y-~yis  150 (953)
T TIGR00930        73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGI-GLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAY-YLIS  150 (953)
T ss_pred             CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHH
Confidence            345789999988887 8999999999999999989884 456778999999999999999999998 99999998 9999


Q ss_pred             hhhCCC
Q psy9216         119 FGSGGW  124 (125)
Q Consensus       119 ~~~G~~  124 (125)
                      +++|+.
T Consensus       151 ralGp~  156 (953)
T TIGR00930       151 RSLGPE  156 (953)
T ss_pred             HHhCcH
Confidence            999984

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.18  E-value=6e-11  Score=94.54  Aligned_cols=78  Identities=23%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             cccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHH-HHHHHHHHHHHHhhhcC-CCchHhHhhHh
Q psy9216          42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGAL-SMIGALCYAELVEKICH-LSGAAVNALDF  119 (125)
Q Consensus        42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~-~~~~a~~~ael~s~~P~-~GG~y~~~~~~  119 (125)
                      +||++++++++.+.++.++|.+.  .+ ......|+.  .++.|++++++ .++++++++||++++|+ +||.| .|+++
T Consensus         5 ~~~~l~~~~l~~~~~~~vig~~~--~~-~~~~~~G~~--~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y-~w~~~   78 (496)
T PRK15238          5 TKKKLSLIGLILMIFTSVFGFAN--SP-RAFYLMGYS--AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIY-SWMNK   78 (496)
T ss_pred             ccCeeeHHHHHHHHHHHHHhCCc--hH-HHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHH-HHHHH
Confidence            47899999999999999998653  23 223344532  44456656655 57899999999999997 89998 99999


Q ss_pred             hhCCCC
Q psy9216         120 GSGGWW  125 (125)
Q Consensus       120 ~~G~~~  125 (125)
                      ++|++|
T Consensus        79 ~~G~~~   84 (496)
T PRK15238         79 SVGPKF   84 (496)
T ss_pred             HcCchH
Confidence            999875

>PHA02764 hypothetical protein; Provisional

Probab=99.15  E-value=9.1e-11  Score=88.42  Aligned_cols=85  Identities=11%  Similarity=-0.035  Sum_probs=65.4

Q ss_pred             ccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhH
Q psy9216          39 KIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALD  118 (125)
Q Consensus        39 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~  118 (125)
                      ...|-|+++.++.+...++.+.. |.-...........++...+++|+++++.+++.+++++|+++++|.+||.| .|.+
T Consensus         7 SSGLVREvs~lDAF~~Nl~~m~~-Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdY-VYIS   84 (399)
T PHA02764          7 SSGIIKSFNILDIFSINLLYMGI-LSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDY-AYIR   84 (399)
T ss_pred             cCCceeeccHHHHHHHHHHhhcc-chhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceE-EEhH
Confidence            34688999999999998888832 221121222233344444566799999999999999999999999999998 9999


Q ss_pred             hhhCCCC
Q psy9216         119 FGSGGWW  125 (125)
Q Consensus       119 ~~~G~~~  125 (125)
                      +++|+++
T Consensus        85 RAFGP~~   91 (399)
T PHA02764         85 TAFSSKF   91 (399)
T ss_pred             HhhCccH
Confidence            9999863

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.14  E-value=1e-10  Score=91.67  Aligned_cols=85  Identities=15%  Similarity=0.241  Sum_probs=77.8

Q ss_pred             cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhh
Q psy9216          38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNAL  117 (125)
Q Consensus        38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~  117 (125)
                      ++++|||.++.+++..++++..||+|.|...+..++.+||.  .+++|++++++.+++.-+++||.-..|.+|+ +..|+
T Consensus         7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS--vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gS-F~~~a   83 (462)
T COG1113           7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS--VLLAYLIAGIFVFLIMRALGEMLVANPVSGS-FSDYA   83 (462)
T ss_pred             cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-HHHHH
Confidence            34569999999999999999999999999999999999875  6678999999999999999999999999965 67999


Q ss_pred             HhhhCCCC
Q psy9216         118 DFGSGGWW  125 (125)
Q Consensus       118 ~~~~G~~~  125 (125)
                      ++.+|+|.
T Consensus        84 ~~~lG~~A   91 (462)
T COG1113          84 RKYLGPWA   91 (462)
T ss_pred             HHHhcchH
Confidence            99999874

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.13  E-value=1.6e-10  Score=90.31  Aligned_cols=84  Identities=35%  Similarity=0.473  Sum_probs=71.9

Q ss_pred             cccccccccChHH-HHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHh
Q psy9216          38 NKIRLQKELGLMD-GVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNA  116 (125)
Q Consensus        38 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~  116 (125)
                      .+++++|+++.++ ...+.++.+++.|+|..++......   +...+.|++++++.++.+++++|+++.+|++||.| .|
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~---~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y-~~   81 (466)
T COG0531           6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAY-AY   81 (466)
T ss_pred             cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCee-ee
Confidence            3556789999999 8999999999999999988866554   22444599999999999999999999999999987 99


Q ss_pred             hHhhhCCCC
Q psy9216         117 LDFGSGGWW  125 (125)
Q Consensus       117 ~~~~~G~~~  125 (125)
                      +++.+|+++
T Consensus        82 ~~~~~g~~~   90 (466)
T COG0531          82 AKRALGPRL   90 (466)
T ss_pred             hhhhcCcch
Confidence            999999863

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.04  E-value=2.8e-10  Score=88.49  Aligned_cols=74  Identities=35%  Similarity=0.616  Sum_probs=60.9

Q ss_pred             cChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216          46 LGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALS-MIGALCYAELVEKICHLSGAAVNALDFGSGGW  124 (125)
Q Consensus        46 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~  124 (125)
                      +++++.+++.++.++|+|++..+  .....|+.  .++.|++++++. ++.+++|+|+++++|.+||.| .|+++.+||+
T Consensus         1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~--~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y-~~~~~~~g~~   75 (426)
T PF13520_consen    1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPS--AILAWIIAALLFFLPIALSYAELSSAYPSAGGIY-VWVSRAFGPF   75 (426)
T ss_dssp             B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCH--HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHH-HHHHHHH-HH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeee-ehhhhccccc
Confidence            57899999999999999999877  34344432  555688888877 899999999999999999997 9999999975

...

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.77  E-value=1.7e-08  Score=77.19  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=69.7

Q ss_pred             ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216          45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW  124 (125)
Q Consensus        45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~  124 (125)
                      +++.++.+.+.++.++|+|++..|+.....+|+.  ++++++++++..++.+++++|+++++|.. +.+ .|.++.+||+
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~--~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~-~~~~~~~Gk~   77 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD--GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFS-EILSKYLGKI   77 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC--eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHH-HHHHHHhhHH
Confidence            6899999999999999999999999988888876  78889999999999999999999999987 554 9999999986

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.74  E-value=1.3e-08  Score=81.53  Aligned_cols=75  Identities=21%  Similarity=0.343  Sum_probs=57.1

Q ss_pred             ccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHH-HHHHHHHH-HHHHHHHHHHHHhhhc-CCCchHhHhhHh
Q psy9216          43 QKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALI-VWVMSGAL-SMIGALCYAELVEKIC-HLSGAAVNALDF  119 (125)
Q Consensus        43 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~-~~i~~~~~-~~~~a~~~ael~s~~P-~~GG~y~~~~~~  119 (125)
                      +|++++++++.+.++.+++  ++..+.  ....|   ...+ .|++++++ .++++++++||++++| .+||.| .|+++
T Consensus         3 ~~~l~~~~~~~~~~~~v~~--~~~~~~--~a~~G---~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y-~wv~~   74 (507)
T TIGR00910         3 AKKLSLFGFFAITASMVLA--VYEYPT--FATSG---FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIF-AWVSN   74 (507)
T ss_pred             CcEeeHHHHHHHHHHHHHH--HHhhHH--HHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCee-eehhh
Confidence            4779999999999888864  554442  22333   3444 46666665 5779999999999997 999997 99999


Q ss_pred             hhCCCC
Q psy9216         120 GSGGWW  125 (125)
Q Consensus       120 ~~G~~~  125 (125)
                      ++|++|
T Consensus        75 a~G~~~   80 (507)
T TIGR00910        75 TLGERF   80 (507)
T ss_pred             ccCccH
Confidence            999875

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.70  E-value=2.2e-08  Score=79.38  Aligned_cols=75  Identities=19%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCchHhHhhHhhhC
Q psy9216          44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALS-MIGALCYAELVEKICHLSGAAVNALDFGSG  122 (125)
Q Consensus        44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~~G  122 (125)
                      ||+++++++.+.+..+++  +...+..  ...|+.  .++.|++++++. ++.+++++||++++|.+||.| .|+++++|
T Consensus         1 ~~~~~~~l~~~~~~~v~~--~~~~~~~--a~~G~~--~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y-~~~~~a~G   73 (474)
T TIGR03813         1 KKLTVVTLAIMNITAVVS--LRGLPAE--AEYGLS--AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVF-RWVGEAFG   73 (474)
T ss_pred             CcccHHHHHHHHHHHHHH--hhcchHH--HHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCce-eeHhhhcC
Confidence            458999999998888765  4443322  234432  455699999876 479999999999999999987 99999999


Q ss_pred             CCC
Q psy9216         123 GWW  125 (125)
Q Consensus       123 ~~~  125 (125)
                      +++
T Consensus        74 ~~~   76 (474)
T TIGR03813        74 ARW   76 (474)
T ss_pred             hhH
Confidence            874

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.64  E-value=9.8e-09  Score=81.38  Aligned_cols=72  Identities=24%  Similarity=0.396  Sum_probs=63.2

Q ss_pred             HHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216          52 VAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW  125 (125)
Q Consensus        52 ~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~  125 (125)
                      +.++++.++|+|+|...+......|+.+ .++++++++++.++.+.+++||++.+|.+||.| .|+++.+|+.+
T Consensus         3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~-~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y-~y~~~~lg~~~   74 (478)
T PF00324_consen    3 FMISIGGIIGTGLFLGSGFAIAAAGPGG-APLAYLIAGIIVLLVALSLAEMSRRFPSAGGFY-AYASRGLGPAL   74 (478)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHhccccc-chhHhHHHHHHHHhhhhhhhhhhhhhccccchh-hhhhhccCCcC
Confidence            3467888999999999999888888643 567899999999999999999999999999987 99999999863

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.49  E-value=9.7e-08  Score=73.60  Aligned_cols=69  Identities=14%  Similarity=0.072  Sum_probs=57.1

Q ss_pred             HHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216          53 AMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW  124 (125)
Q Consensus        53 ~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~  124 (125)
                      .+.++.+||+|++.+|.......+  .+.++..+++++.+.+.+++++|+++++|..+|.| .|.++.+||+
T Consensus         4 ~lv~gt~IGaGIl~lP~~~a~~g~--~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~-~~~~~~~G~~   72 (381)
T TIGR00837         4 LIIAGTTIGAGMLALPTSTAGAWF--IWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFN-TIAKDLLGKT   72 (381)
T ss_pred             EEeehhhHhHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-HHHHHHhCHH
Confidence            456788999999999988665432  23555678899999999999999999999987765 9999999986

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.26  E-value=0.0013  Score=49.74  Aligned_cols=75  Identities=21%  Similarity=0.326  Sum_probs=66.6

Q ss_pred             ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216          45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW  124 (125)
Q Consensus        45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~  124 (125)
                      |++..|...+.+..++|+++...|+.....++ .  ++++.+++++..+..++.+..+.+++|.. . ...|.++.+||+
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d--~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~-l~~~~~~~~Gk~   75 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-D--AWISVLLGGLIGLLLALLIYYLLKRFPGK-T-LVEISEKLFGKW   75 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--cHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-HHHHHHHHhCcH
Confidence            47889999999999999999999999888875 4  67889999999999999999999999997 3 459999999986

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.10  E-value=0.002  Score=50.47  Aligned_cols=78  Identities=22%  Similarity=0.286  Sum_probs=62.7

Q ss_pred             ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216          45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW  124 (125)
Q Consensus        45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~  124 (125)
                      +-+.+....+.+|+.||.|+..+|-.. ...|- .+..+..+++........+.++|+....|. +.+|..-+++.+|++
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~-~~~Gf-~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~   78 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIAT-AGAGF-LPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK   78 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHH-HhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence            447788899999999999999998653 33342 345556888888889999999999999988 567889999999986


Q ss_pred             C
Q psy9216         125 W  125 (125)
Q Consensus       125 ~  125 (125)
                      |
T Consensus        79 g   79 (394)
T PF03222_consen   79 G   79 (394)
T ss_pred             H
Confidence            4

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0039  Score=49.20  Aligned_cols=83  Identities=16%  Similarity=0.244  Sum_probs=65.7

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG  120 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~  120 (125)
                      +.+++-+.++.+...++.+||+|+...|-. ....| -.+.++..++++....+..+.+.|.....|+...+|..-+++.
T Consensus         4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G-~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~   81 (415)
T COG0814           4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGG-FWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY   81 (415)
T ss_pred             cccCCcchHHHHHHHHccccccchhhhhHH-hcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence            345566778888899999999999999854 33333 2334445888999999999999999999999754677999999


Q ss_pred             hCCCC
Q psy9216         121 SGGWW  125 (125)
Q Consensus       121 ~G~~~  125 (125)
                      +|++|
T Consensus        82 ~G~~~   86 (415)
T COG0814          82 LGKKG   86 (415)
T ss_pred             hCcch
Confidence            99876

>PRK10483 tryptophan permease; Provisional

Probab=96.91  E-value=0.004  Score=49.22  Aligned_cols=81  Identities=20%  Similarity=0.209  Sum_probs=65.9

Q ss_pred             cccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhh
Q psy9216          42 LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGS  121 (125)
Q Consensus        42 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~  121 (125)
                      -|++.+.+....+..|+.||.|++..|-. ....|- .++.+..+++.+.+...++.+.|....+|. |-++..-+++..
T Consensus         7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF-~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~L   83 (414)
T PRK10483          7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWF-FWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLL   83 (414)
T ss_pred             ccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHc
Confidence            35778999999999999999999999855 334443 345556888889999999999999988886 566789999999


Q ss_pred             CCCC
Q psy9216         122 GGWW  125 (125)
Q Consensus       122 G~~~  125 (125)
                      |+.|
T Consensus        84 G~~g   87 (414)
T PRK10483         84 GKGW   87 (414)
T ss_pred             ChHH
Confidence            9865

>PRK09664 tryptophan permease TnaB; Provisional

Probab=96.81  E-value=0.0038  Score=49.39  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=60.9

Q ss_pred             ChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216          47 GLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW  125 (125)
Q Consensus        47 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~  125 (125)
                      +.+....+..|++||.|++..|-. .+..|- .++.+..+++.+.+...++.+.|....+|. |-++..-+++..|+.|
T Consensus        10 ~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf-~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g   85 (415)
T PRK09664         10 SAFWGVMVIAGTVIGGGMFALPVD-LAGAWF-FWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTW   85 (415)
T ss_pred             chhhhhHHhhhccHhHHHHHHHHH-HhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHH
Confidence            667788899999999999999855 333442 234556888889999999999999999986 5667899999999864

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=96.54  E-value=0.0051  Score=48.10  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=52.8

Q ss_pred             HhhchhcchhccchHHHHHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216          55 IVGVIVGSGIFVSPIGVLKNAGSP-GLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW  124 (125)
Q Consensus        55 ~~~~~ig~gi~~~~~~~~~~~G~~-G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~  124 (125)
                      .++.-+|+|.+.-|..+...+|+. .++++.|++++++..+.+++      +.|.+||.| .+..+.+||+
T Consensus         4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~-~~l~~~~g~~   67 (378)
T TIGR00796         4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGY-DSLSARIGKV   67 (378)
T ss_pred             HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCH-HHHHHHhChH
Confidence            345558899999999999999877 66677799999999888887      899999987 8888888875

transmembrane helical spanners.

>TIGR00814 stp serine transporter

Probab=96.45  E-value=0.0079  Score=47.28  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=46.3

Q ss_pred             HHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHH----HHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216          52 VAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALC----YAELVEKICHLSGAAVNALDFGSGGWW  125 (125)
Q Consensus        52 ~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~----~ael~s~~P~~GG~y~~~~~~~~G~~~  125 (125)
                      +...++.++|+|++..|..    +|..  .++.+++..++.+..++.    +.|.....|..+..+..++++.|||++
T Consensus         9 ~~~l~gt~IGaGiL~LP~~----ag~~--G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~   80 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQ----AGLG--GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW   80 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH
Confidence            4556688899999999976    3333  355667766666665554    455544445545567799999999864

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=96.44  E-value=0.018  Score=45.64  Aligned_cols=82  Identities=16%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-------CCchH
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICH-------LSGAA  113 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~-------~GG~y  113 (125)
                      +-+++++.++.++.+++..+|+|=.......+...|| |..+|-|+.+.+ -+...++=.-|+-.|-+       .||..
T Consensus        14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~-Gmatk~~E~~La~~yR~~~~~G~~~GGP~   91 (416)
T PF01235_consen   14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALL-GMATKYAEVTLAQKYREKDEDGEYRGGPM   91 (416)
T ss_pred             CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHH-HHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence            3456899999999999999999988887776655554 444445665443 33333333336655543       36674


Q ss_pred             hHhhHhhhCCCC
Q psy9216         114 VNALDFGSGGWW  125 (125)
Q Consensus       114 ~~~~~~~~G~~~  125 (125)
                       +|.++.+|.+|
T Consensus        92 -yyi~~gl~~k~  102 (416)
T PF01235_consen   92 -YYIEKGLGSKW  102 (416)
T ss_pred             -HHHHHHhccch
Confidence             89999999776

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>KOG1303|consensus

Probab=96.34  E-value=0.034  Score=44.36  Aligned_cols=82  Identities=12%  Similarity=0.143  Sum_probs=62.4

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch----HhHh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGA----AVNA  116 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~----y~~~  116 (125)
                      ..+|+-++++.....++.++|.|+..+| .+....|-. +.++..++.+++.+-.+.-+.++-...|.-.|.    |...
T Consensus        33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lGW~-~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl  110 (437)
T KOG1303|consen   33 TPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLGWI-SGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL  110 (437)
T ss_pred             ccCCCCcceehhhheehhhhhhhhhhhH-HHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence            3467789999999999999999999988 445555532 224456677777777777788888777777664    8889


Q ss_pred             hHhhhCCC
Q psy9216         117 LDFGSGGW  124 (125)
Q Consensus       117 ~~~~~G~~  124 (125)
                      .+++||++
T Consensus       111 ~~~afG~~  118 (437)
T KOG1303|consen  111 GQAAFGPK  118 (437)
T ss_pred             HHHHhCCC
Confidence            99999975

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=95.62  E-value=0.063  Score=42.90  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=53.2

Q ss_pred             HHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216          53 AMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW  125 (125)
Q Consensus        53 ~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~  125 (125)
                      ...+|..||.|++.+|-... ..| -.+.++..+++..+.....+.+.|.....+..|..+..-+++.+|+.|
T Consensus        26 l~l~GTAIGAGmLfLPI~~g-~~G-f~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g   96 (443)
T PRK13629         26 LGLFGTAIGAGVLFFPIRAG-FGG-LIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTG   96 (443)
T ss_pred             HHHHHHHHhHHHHHHHHHHh-cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhH
Confidence            45668889999999985422 222 223344478888888888899999999985567778899999999865

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=95.53  E-value=0.048  Score=43.01  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=56.0

Q ss_pred             ChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCCC
Q psy9216          47 GLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGWW  125 (125)
Q Consensus        47 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~~  125 (125)
                      +.+....+.+|+.||.|++.+|-... ..|- .+.++..+++.......++.++|....+|. |..+..-+++.+|+++
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~-~~Gf-~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g   79 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAA-GVGF-SVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYG   79 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHH-hChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHH
Confidence            56777888999999999999985533 3332 234444677777677788889997777764 4567789999999864

>PTZ00206 amino acid transporter; Provisional

Probab=93.98  E-value=0.53  Score=37.71  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=46.7

Q ss_pred             ChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCCC
Q psy9216          47 GLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGGW  124 (125)
Q Consensus        47 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~~  124 (125)
                      +.++...-.+..++|+|+...|.. ....|-. +.++..++.++++......+.+.+...+.  -.|..-.+.++|++
T Consensus        61 g~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v-~giillil~a~ls~ys~~lL~~~~~~~~~--~sY~~la~~~~G~~  134 (467)
T PTZ00206         61 GIAASAFNIASSTVGAGIVGLPSA-ANSSGLV-MAMIYLIIITAMTIFSIYALGVAADKTNI--RTYEGVARVLLGPW  134 (467)
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhCHH
Confidence            345566666777899999998866 3445432 23334555555555555556666655443  36888888888875

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=93.86  E-value=0.46  Score=38.02  Aligned_cols=80  Identities=19%  Similarity=0.287  Sum_probs=57.4

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH--HHhhhc-------CCCc
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAE--LVEKIC-------HLSG  111 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ae--l~s~~P-------~~GG  111 (125)
                      +-++.++.++.++.+++..+|+|=.......+...|| |..+|-|+.+.+.+   +..|+|  |+..|-       -.||
T Consensus        58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gm---at~f~E~~La~~Yr~kd~~G~~~GG  133 (452)
T COG1115          58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGM---ATKFAESTLAQKYRVKDKDGEYRGG  133 (452)
T ss_pred             CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHH---HHHHHHHHHHhheeEeCCCCCCcCC
Confidence            3457799999999999999999888877776655554 54555688665543   445555  666664       2456


Q ss_pred             hHhHhhHhhhCCCC
Q psy9216         112 AAVNALDFGSGGWW  125 (125)
Q Consensus       112 ~y~~~~~~~~G~~~  125 (125)
                      + .+|.++.+|.+|
T Consensus       134 P-~yYi~kGl~~r~  146 (452)
T COG1115         134 P-AYYIEKGLGMRW  146 (452)
T ss_pred             h-HHHHHhhcCCcH
Confidence            6 489999998765

>TIGR00835 agcS amino acid carrier protein

Probab=93.51  E-value=0.46  Score=37.86  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             cccChHHHHHHHhhchhcch-hccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc---C----CCchHhH
Q psy9216          44 KELGLMDGVAMIVGVIVGSG-IFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKIC---H----LSGAAVN  115 (125)
Q Consensus        44 r~l~~~~~~~~~~~~~ig~g-i~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P---~----~GG~y~~  115 (125)
                      .+++.++.++.+++..+|+| +...+.. +...|+ |..++-|+.+.+. ....++-.-|+-.|-   .    .||.. +
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GGp-GAvFWMWI~allG-m~~~~~e~~L~~~yr~~~~~g~~~GGP~-y  120 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAIGGP-GAVFWMWVTAFIG-MATKFVESTLAQKYRERDADGVFRGGPM-Y  120 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcCC-CchHHHHHHHHHH-HHHHHHHHHHHHHeeeeCCCCCEecChH-H
Confidence            45999999999999999998 6555544 555565 4344556654443 333344333554443   2    24543 6


Q ss_pred             hhHhhhCCCC
Q psy9216         116 ALDFGSGGWW  125 (125)
Q Consensus       116 ~~~~~~G~~~  125 (125)
                      |.++..+.+|
T Consensus       121 yi~~gl~~k~  130 (425)
T TIGR00835       121 YIKKGLGMRW  130 (425)
T ss_pred             HHHHHhCccH
Confidence            7777766443

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=93.05  E-value=0.15  Score=39.33  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCchHhHhhHhhh
Q psy9216          44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKIC--HLSGAAVNALDFGS  121 (125)
Q Consensus        44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P--~~GG~y~~~~~~~~  121 (125)
                      |+-+.++.....++.++|+|++..|.... ..|-. +.++..++.++++......+.+.....|  +.--.|..-.++.+
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~-~~G~~-~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~   78 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFA-QSGWV-LGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF   78 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhhh-hhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            45688999999999999999999987644 44422 2334467777777777888888887765  22345666677888


Q ss_pred             CCCC
Q psy9216         122 GGWW  125 (125)
Q Consensus       122 G~~~  125 (125)
                      |+++
T Consensus        79 G~~~   82 (409)
T PF01490_consen   79 GPKG   82 (409)
T ss_pred             cccc
Confidence            8764

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=91.30  E-value=1.7  Score=35.02  Aligned_cols=79  Identities=15%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             ccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCch-------H
Q psy9216          45 ELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCY----AELVEKICHLSGA-------A  113 (125)
Q Consensus        45 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~----ael~s~~P~~GG~-------y  113 (125)
                      .-+.++...-.+...+|.|+..+|.. ....|-. +.++..++.+++..-....+    -|...+.|..+-.       |
T Consensus        45 ~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v-~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~  122 (473)
T PLN03074         45 GGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGML-SGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW  122 (473)
T ss_pred             CchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence            33445554556677789999998866 4455532 23334455554444444443    4556666664322       2


Q ss_pred             hHhhHhhhCCCC
Q psy9216         114 VNALDFGSGGWW  125 (125)
Q Consensus       114 ~~~~~~~~G~~~  125 (125)
                      ..-....+|++|
T Consensus       123 ~e~~~~~~G~~~  134 (473)
T PLN03074        123 FEVLDGLLGPYW  134 (473)
T ss_pred             HHHHHHhcChhH
Confidence            233344567764

>KOG1305|consensus

Probab=89.64  E-value=2.6  Score=33.52  Aligned_cols=77  Identities=23%  Similarity=0.299  Sum_probs=59.5

Q ss_pred             cccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhhhCC
Q psy9216          44 KELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFGSGG  123 (125)
Q Consensus        44 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~~G~  123 (125)
                      ++-+.+..+.-..+.++|+|++..|.. ....| ..+.++...+.++........+.+.+...+..  .|..-.+..+|+
T Consensus         4 ~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~G-iv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~   79 (411)
T KOG1305|consen    4 GKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAG-LLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGK   79 (411)
T ss_pred             CccchhhhHHHHHhhhhccHHHHhHHH-HHHhc-HHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCC
Confidence            455777788888899999999998865 55555 34445557777888888888899998888887  788888888886


Q ss_pred             C
Q psy9216         124 W  124 (125)
Q Consensus       124 ~  124 (125)
                      .
T Consensus        80 ~   80 (411)
T KOG1305|consen   80 L   80 (411)
T ss_pred             C
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	5e-12
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	6e-09

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 42  LQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAE 101
              ++GL+    M+ G I+GSG+F+ P  +   A + G+A+  W+++   ++  ++ YA+
Sbjct: 6   DAHKVGLIPVTLMVSGAIMGSGVFLLPANL---ASTGGIAIYGWLVTIIGALGLSMVYAK 62

Query: 102 LVEKICHLSGA 112
           +        G+
Sbjct: 63  MSFLDPSPGGS 73

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 41  RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYA 100
              K+L L + V+M VGV++G+ IF       K AG   L    +++SG  +++ A  Y 
Sbjct: 3   LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAG-RNLP-ETFILSGIYALLVAYSYT 60

Query: 101 EL 102
           +L
Sbjct: 61  KL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.5
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.49
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.09
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	92.05

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.50  E-value=3.7e-14  Score=109.05  Aligned_cols=81  Identities=28%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG  120 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~  120 (125)
                      +.||+++.++.++++++.++|+|+|..++.....+|+.  .++.|++++++.++.+++++|+++++|.+||.| .|+++.
T Consensus         3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~--~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y-~~~~~~   79 (444)
T 3gia_A            3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN--LPETFILSGIYALLVAYSYTKLGAKIVSNAGPI-AFIHKA   79 (444)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHH-HHHHHH
T ss_pred             ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HhHHHH
Confidence            45799999999999999999999999998888888764  677899999999999999999999999999997 999999


Q ss_pred             hCCC
Q psy9216         121 SGGW  124 (125)
Q Consensus       121 ~G~~  124 (125)
                      +|++
T Consensus        80 ~G~~   83 (444)
T 3gia_A           80 IGDN   83 (444)
T ss_dssp             HCSS
T ss_pred             hCcc
Confidence            9985

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.49  E-value=3.2e-14  Score=109.28  Aligned_cols=81  Identities=21%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             cccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHh
Q psy9216          40 IRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDF  119 (125)
Q Consensus        40 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~  119 (125)
                      +++||+++.++.+++.++.++|+|+|..++.+ ...|+.  +++.|++++++.++.+++++|+++++|.+||.| .|+++
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~~G~~--~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y-~~~~~   79 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-ASTGGI--AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSY-AYARR   79 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HHHCTH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHH-HHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HHhhhH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCch-hhHHh
Confidence            35789999999999999999999999998774 456753  677899999999999999999999999999987 99999


Q ss_pred             hhCCC
Q psy9216         120 GSGGW  124 (125)
Q Consensus       120 ~~G~~  124 (125)
                      .+|++
T Consensus        80 ~~G~~   84 (445)
T 3l1l_A           80 CFGPF   84 (445)
T ss_dssp             HSCHH
T ss_pred             HcCCh
Confidence            99975

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.09  E-value=7.2e-11  Score=92.12  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=52.0

Q ss_pred             cccccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHH-HHHHHHHHH-HHHHHHHHHHHh--hhcCCCchH
Q psy9216          38 NKIRLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALI-VWVMSGALS-MIGALCYAELVE--KICHLSGAA  113 (125)
Q Consensus        38 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~-~~i~~~~~~-~~~a~~~ael~s--~~P~~GG~y  113 (125)
                      +++++||+++.+++++++++.++|  ++..+.  ....|   +..+ .|++++++. ++.+++++|+++  ++| +||.|
T Consensus         5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G---~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y   76 (511)
T 4djk_A            5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSG---FSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVF   76 (511)
T ss_dssp             -------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTT---THHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHH
T ss_pred             ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChh
Confidence            356789999999999999999986  555443  23334   3444 455555554 469999999999  999 99997


Q ss_pred             hHhhHhhhCCC
Q psy9216         114 VNALDFGSGGW  124 (125)
Q Consensus       114 ~~~~~~~~G~~  124 (125)
                       .|+++.+|++
T Consensus        77 -~~~~~~~g~~   86 (511)
T 4djk_A           77 -AWVSNTLGPR   86 (511)
T ss_dssp             -HHHHHHHCHH
T ss_pred             -hhHHhhcCch
Confidence             9999999975

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=92.05  E-value=0.56  Score=36.70  Aligned_cols=80  Identities=13%  Similarity=0.013  Sum_probs=49.7

Q ss_pred             ccccccChHHHHHHHhhchhcchhccchHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHhHhhHhh
Q psy9216          41 RLQKELGLMDGVAMIVGVIVGSGIFVSPIGVLKNAGSPGLALIVWVMSGALSMIGALCYAELVEKICHLSGAAVNALDFG  120 (125)
Q Consensus        41 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~G~~G~~~~~~i~~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~  120 (125)
                      +-+|+.+.++.+.+-++..+..+.+...+... . |..  ..-+++...+..++..+..+-++..-|..|-.|....+..
T Consensus        22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~-GLs--~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~   97 (501)
T 2jln_A           22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S-SFQ--VWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMP   97 (501)
T ss_dssp             GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T-TSC--HHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTT
T ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c-CcC--HHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhh
Confidence            34577899999988888776655554433323 2 432  2223444455555555555555555566666677899999


Q ss_pred             hCCC
Q psy9216         121 SGGW  124 (125)
Q Consensus       121 ~G~~  124 (125)
                      ||.+
T Consensus        98 FG~~  101 (501)
T 2jln_A           98 FGIR  101 (501)
T ss_dssp             SCTT
T ss_pred             cchh
Confidence            9976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00