Psyllid ID: psy9230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKYASHEDTAGKVINAK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqdfsssndsgnvfskTSKSIKQRYQTLLdlstpytfgRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFlspkadlwldshtdctplscpvktkvtggvirqhftiyrhfsfppdndddmqlptraseefRPFIRRLPEFKFWYSVMKSTLFATFFTlfdcfnipvfWPILVLYFITLFIITMKRQIKVSLINMcrkesplvtTYHLQYLlscpqrnndddmqlptraseefRPFIRRLPEFKFWYSVMKSTLFATFFTlfdcfnipvfWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKyryvpfswgkpkyashedtagkvinak
Flexible Loop (DISEMBL)
mqdfsssndsgnvfsKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRhfsfppdndddMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVpfswgkpkyashedtagkvinak
Low Complexity Region (SEG)
MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVaalllifflariyllQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKYASHEDTAGKVINAK
Disordered region (IsUnstruct)
***********************RYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSF*****************FRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCP*****************FRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKY**************
Disordered Region (DISOPRED)
****************TSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDC*P*****************FTIYR***********************PFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQ***************************IRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWG******************
Disordered Region (DISEMBL)
**************SKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKYASHEDTAGKVINAK
Disordered Region (DISPRO)
***********NVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTP*****************************************EEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCP********QLPTR*SEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGK*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKYASHEDTAGKVINAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	N/A	0.396	0.729	0.531	3e-42
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	N/A	0.396	0.729	0.525	3e-42
O15258	196	Protein RER1 OS=Homo sapi	yes	N/A	0.396	0.729	0.525	3e-42
Q498C8	196	Protein RER1 OS=Rattus no	yes	N/A	0.445	0.821	0.487	6e-42
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	N/A	0.445	0.821	0.487	6e-42
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	N/A	0.445	0.821	0.482	2e-41
P25560	188	Protein RER1 OS=Saccharom	yes	N/A	0.445	0.856	0.402	9e-35
P79003	188	Protein RER1 OS=Saccharom	N/A	N/A	0.434	0.835	0.403	1e-34
O48670	191	Protein RER1A OS=Arabidop	yes	N/A	0.434	0.821	0.410	9e-33
O48671	195	Protein RER1B OS=Arabidop	no	N/A	0.432	0.8	0.389	2e-32

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 106/177 (59%), Gaps = 34/177 (19%)

Query: 21  IKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLS 80
           + Q YQ+ LD STPYT  RW V   L   ++ R+YLLQGWYI+ YALGIY LNLFIAFLS
Sbjct: 25  LGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLS 84

Query: 81  PKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFR 140
           PK D                                   S   D+DD   LPTR +EEFR
Sbjct: 85  PKVDP----------------------------------SLMEDSDDGPSLPTRQNEEFR 110

Query: 141 PFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIK 197
           PFIRRLPEFKFW+S  K  L A   T F+ FN+PVFWPILV+YFI LF ITMKRQIK
Sbjct: 111 PFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIK 167

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Gallus gallus (taxid: 9031)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 106/177 (59%), Gaps = 34/177 (19%)

Query: 21  IKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLS 80
           + Q YQ+ LD STPYT  RW V   L   ++ R+YLLQGWYI+ YALGIY LNLFIAFLS
Sbjct: 25  LGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLS 84

Query: 81  PKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFR 140
           PK D                                   S   D+DD   LPT+ +EEFR
Sbjct: 85  PKVDP----------------------------------SLMEDSDDGPSLPTKQNEEFR 110

Query: 141 PFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIK 197
           PFIRRLPEFKFW++  K  L A   T FD FN+PVFWPILV+YFI LF ITMKRQIK
Sbjct: 111 PFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIK 167

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 106/177 (59%), Gaps = 34/177 (19%)

Query: 21  IKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLS 80
           + Q YQ+ LD STPYT  RW V   L   ++ R+YLLQGWYI+ YALGIY LNLFIAFLS
Sbjct: 25  LGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLS 84

Query: 81  PKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFR 140
           PK D                                   S   D+DD   LPT+ +EEFR
Sbjct: 85  PKVDP----------------------------------SLMEDSDDGPSLPTKQNEEFR 110

Query: 141 PFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIK 197
           PFIRRLPEFKFW++  K  L A   T FD FN+PVFWPILV+YFI LF ITMKRQIK
Sbjct: 111 PFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIK 167

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 114/203 (56%), Gaps = 42/203 (20%)

Query: 1   MQDFSSSNDSGNVFSKTS------KSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARI 54
           M +  S  DS  V  K S        + Q YQ+ LD STPYT  RW V   L   ++ R+
Sbjct: 1   MSEGDSVGDS--VHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRV 58

Query: 55  YLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFT 114
           YLLQGWYI+ YALGIY LNLFIAFLSPK D                              
Sbjct: 59  YLLQGWYIVTYALGIYHLNLFIAFLSPKVDP----------------------------- 89

Query: 115 IYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIP 174
                S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+P
Sbjct: 90  -----SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVP 144

Query: 175 VFWPILVLYFITLFIITMKRQIK 197
           VFWPILV+YFI LF ITMKRQIK
Sbjct: 145 VFWPILVMYFIMLFCITMKRQIK 167

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 114/203 (56%), Gaps = 42/203 (20%)

Query: 1   MQDFSSSNDSGNVFSKTS------KSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARI 54
           M +  S  DS  V  K S        + Q YQ+ LD STPYT  RW V   L   ++ R+
Sbjct: 1   MSEGDSVGDS--VHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRV 58

Query: 55  YLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFT 114
           YLLQGWYI+ YALGIY LNLFIAFLSPK D                              
Sbjct: 59  YLLQGWYIVTYALGIYHLNLFIAFLSPKVDP----------------------------- 89

Query: 115 IYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIP 174
                S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+P
Sbjct: 90  -----SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVP 144

Query: 175 VFWPILVLYFITLFIITMKRQIK 197
           VFWPILV+YFI LF ITMKRQIK
Sbjct: 145 VFWPILVMYFIMLFCITMKRQIK 167

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 114/203 (56%), Gaps = 42/203 (20%)

Query: 1   MQDFSSSNDSGNVFSKTS------KSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARI 54
           M +  S  DS  V  K S        + Q YQ+ LD STP+T  RW V   L   ++ R+
Sbjct: 1   MSEGDSVGDS--VHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRV 58

Query: 55  YLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFT 114
           YLLQGWYI+ YALGIY LNLFIAFLSPK D                              
Sbjct: 59  YLLQGWYIVTYALGIYHLNLFIAFLSPKVDP----------------------------- 89

Query: 115 IYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIP 174
                S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+P
Sbjct: 90  -----SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVP 144

Query: 175 VFWPILVLYFITLFIITMKRQIK 197
           VFWPILV+YFI LF ITMKRQIK
Sbjct: 145 VFWPILVMYFIMLFCITMKRQIK 167

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

>sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER1 PE=1 SV=2

 Score =  147 bits (372), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 109/199 (54%), Gaps = 38/199 (19%)

Query: 3   DFSSSN----DSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQ 58
           D+ SS+     S N       ++K  YQ  LD  TP+   RW+V   LL  F+ RI + +
Sbjct: 2   DYDSSDTMNGGSSNPLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAE 61

Query: 59  GWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRH 118
           GWY+ICY LG++ LN F+AFL+PK D+ L    +   L    K                 
Sbjct: 62  GWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEK----------------- 104

Query: 119 FSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWP 178
                            SEEFRPFIRRLPEFKFWY+ +++T+ +   +LF  F+IPVFWP
Sbjct: 105 -----------------SEEFRPFIRRLPEFKFWYNSIRATVISLLLSLFSIFDIPVFWP 147

Query: 179 ILVLYFITLFIITMKRQIK 197
           IL++YFI LF +TM+RQI+
Sbjct: 148 ILLMYFILLFFLTMRRQIQ 166

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. Required for correct localization of SEC12, SEC71 and SEC63 in the endoplasmic reticulum.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 104/191 (54%), Gaps = 34/191 (17%)

Query: 7   SNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYA 66
           +  S N       S K  YQ  LD  TP+   RW+V   LL  F+ RI + +GWY+ICY 
Sbjct: 10  NGASSNALIAKMNSAKLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYG 69

Query: 67  LGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDND 126
           LG++ LN F+AFL+PK D+ L    +   L    K                         
Sbjct: 70  LGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEK------------------------- 104

Query: 127 DDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFIT 186
                    SEEFRPFIRRLPEFKFWY+ +++T+ +   +LF  F+IPVFWPIL++YF+ 
Sbjct: 105 ---------SEEFRPFIRRLPEFKFWYNSIRATVISLVLSLFSIFDIPVFWPILLMYFVL 155

Query: 187 LFIITMKRQIK 197
           LF +TM+RQI+
Sbjct: 156 LFFLTMRRQIQ 166

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. Required for correct localization of SEC12, SEC71 and SEC63 in the endoplasmic reticulum.

Saccharomyces pastorianus (taxid: 27292)

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  141 bits (355), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 104/195 (53%), Gaps = 38/195 (19%)

Query: 5   SSSNDSGNVFSKTSKSIKQR---YQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWY 61
            S  DSG+V +   +   +    YQ  LD +TP+   RW    ++ + +  R+Y +QG+Y
Sbjct: 3   ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62

Query: 62  IICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSF 121
           II Y LGIY LNL I FLSP  D                     GGV             
Sbjct: 63  IIAYGLGIYLLNLLIGFLSPLVD------------------PEAGGV------------- 91

Query: 122 PPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILV 181
                D   LPTR S+EF+PFIRRLPEFKFWYS+ K+   A   T F  F++PVFWPIL+
Sbjct: 92  ----SDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILL 147

Query: 182 LYFITLFIITMKRQI 196
            Y+I LF++TM+RQI
Sbjct: 148 CYWIVLFVLTMRRQI 162

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 103/195 (52%), Gaps = 39/195 (20%)

Query: 5   SSSNDSGNVFSKTSKSIKQR---YQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWY 61
            S  DSG++ +   K + +    YQ  LD +TP++  RW    +  + +  R+Y + G+Y
Sbjct: 3   GSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFY 62

Query: 62  IICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSF 121
           II Y LGIY LNL I FLSP  D  L+                                 
Sbjct: 63  IISYGLGIYLLNLLIGFLSPLVDPELEV-------------------------------- 90

Query: 122 PPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILV 181
                D   LPTR S+EF+PFIRRLPEFKFWYS+ K+   A   T F  F++PVFWPIL+
Sbjct: 91  ----SDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILL 146

Query: 182 LYFITLFIITMKRQI 196
            Y++ LF++TM+RQI
Sbjct: 147 CYWVVLFVLTMRRQI 161

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
383857094	195	PREDICTED: protein RER1-like [Megachile	0.451	0.835	0.535	6e-47
195504434	203	GE23580 [Drosophila yakuba] gi|194185178	0.462	0.822	0.517	1e-45
194908768	203	GG11383 [Drosophila erecta] gi|190656474	0.462	0.822	0.512	1e-45
340712353	195	PREDICTED: protein RER1-like isoform 2 [	0.421	0.779	0.543	2e-45
328788639	197	PREDICTED: protein RER1-like [Apis melli	0.451	0.827	0.515	3e-45
21356291	203	CG11857 [Drosophila melanogaster] gi|730	0.462	0.822	0.512	3e-45
340712351	195	PREDICTED: protein RER1-like isoform 1 [	0.421	0.779	0.543	3e-45
195354840	203	GM17826 [Drosophila sechellia] gi|195573	0.462	0.822	0.512	3e-45
194741058	203	GF17557 [Drosophila ananassae] gi|190626	0.462	0.822	0.512	6e-45
350417628	195	PREDICTED: protein RER1-like [Bombus imp	0.421	0.779	0.537	1e-44

>gi|383857094|ref|XP_003704041.1| PREDICTED: protein RER1-like [Megachile rotundata]

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 125/198 (63%), Gaps = 35/198 (17%)

Query: 1   MQDFSSSNDSG-NVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQG 59
           MQD      +  NVFS+    I Q YQ  LDL TP+   RW+ A+LL+  F+ RI+L QG
Sbjct: 2   MQDEHLGGPARRNVFSQGLGRISQIYQRYLDLWTPHVVSRWTFASLLVFLFILRIFLSQG 61

Query: 60  WYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHF 119
           WYI+ YALGIY LNLFIAFL+PK D  +D                               
Sbjct: 62  WYIVTYALGIYHLNLFIAFLTPKIDPAMDF------------------------------ 91

Query: 120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
               D+ +  +LPTR++EEFRPFIRRLPEFKFWYSVMKST+ A   T+FDCFNIPVFWPI
Sbjct: 92  ----DDGEGPELPTRSNEEFRPFIRRLPEFKFWYSVMKSTIIAMICTMFDCFNIPVFWPI 147

Query: 180 LVLYFITLFIITMKRQIK 197
           LV+YFITLF ITMKRQIK
Sbjct: 148 LVMYFITLFCITMKRQIK 165

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195504434|ref|XP_002099077.1| GE23580 [Drosophila yakuba] gi|194185178|gb|EDW98789.1| GE23580 [Drosophila yakuba]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 120/197 (60%), Gaps = 30/197 (15%)

Query: 1   MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGW 60
           M +  SS  SG    K  + + Q YQ+ LD STP+T  RW  A  LL+ F+ RI++ QGW
Sbjct: 1   MMNEDSSAASGGGVKKFFQRLSQTYQSTLDRSTPHTRMRWVFAGFLLLLFVLRIFIYQGW 60

Query: 61  YIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFS 120
           YI+CYALGIY LNLFIAFL+PK D   D ++                             
Sbjct: 61  YIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQ---------------------------- 92

Query: 121 FPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPIL 180
              D D+   LPTR++EEFRPFIRRLPEFKFW SV KSTL     T FD FN+PVFWPIL
Sbjct: 93  --DDEDEGPNLPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPIL 150

Query: 181 VLYFITLFIITMKRQIK 197
           V+YFITLF ITMKRQIK
Sbjct: 151 VMYFITLFCITMKRQIK 167

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194908768|ref|XP_001981836.1| GG11383 [Drosophila erecta] gi|190656474|gb|EDV53706.1| GG11383 [Drosophila erecta]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 119/197 (60%), Gaps = 30/197 (15%)

Query: 1   MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGW 60
           M +  SS   G    K  + + Q YQ+ LD STP+T  RW  A  LL+ F+ RI++ QGW
Sbjct: 1   MMNEDSSAAGGGGVKKFFQRLSQTYQSTLDRSTPHTRMRWVFAGFLLLLFVLRIFIYQGW 60

Query: 61  YIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFS 120
           YI+CYALGIY LNLFIAFL+PK D   D ++                             
Sbjct: 61  YIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQ---------------------------- 92

Query: 121 FPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPIL 180
              D D+   LPTR++EEFRPFIRRLPEFKFW SV KSTL     T FD FN+PVFWPIL
Sbjct: 93  --DDEDEGPNLPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDVFNVPVFWPIL 150

Query: 181 VLYFITLFIITMKRQIK 197
           V+YFITLF ITMKRQIK
Sbjct: 151 VMYFITLFCITMKRQIK 167

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712353|ref|XP_003394726.1| PREDICTED: protein RER1-like isoform 2 [Bombus terrestris]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/186 (54%), Positives = 118/186 (63%), Gaps = 34/186 (18%)

Query: 12  NVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYD 71
           NVFS+    I Q YQT LDL TP+   RW+VA  L+  F  RI L +GWYI+ YAL IY 
Sbjct: 14  NVFSQAIGRISQLYQTYLDLWTPHAVSRWTVAFFLVFVFSLRILLSEGWYIVTYALAIYH 73

Query: 72  LNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQL 131
           LNLFIAFL+PK D  +D                                   D+ +  +L
Sbjct: 74  LNLFIAFLTPKIDPGMDF----------------------------------DDGEGPEL 99

Query: 132 PTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIIT 191
           PTR++EEFRPFIRRLPEFKFWYSVMKST+ A   T+FDCFN+PVFWPILV+YFITLF IT
Sbjct: 100 PTRSNEEFRPFIRRLPEFKFWYSVMKSTIIAMICTMFDCFNVPVFWPILVMYFITLFCIT 159

Query: 192 MKRQIK 197
           MKRQIK
Sbjct: 160 MKRQIK 165

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788639|ref|XP_393582.3| PREDICTED: protein RER1-like [Apis mellifera]

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 122/198 (61%), Gaps = 35/198 (17%)

Query: 1   MQDFSSSNDSG-NVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQG 59
           MQD      +  NVFS+    I Q YQ  LDL TP+   RW+VA  L+  F  R++L +G
Sbjct: 2   MQDEHLGGPARRNVFSQAIGRISQLYQRYLDLWTPHVVSRWAVALFLIFVFFLRVFLSEG 61

Query: 60  WYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHF 119
           WYI+ YAL IY LNLFIAFL+PK D  +D                               
Sbjct: 62  WYIVTYALAIYHLNLFIAFLTPKIDPAMDF------------------------------ 91

Query: 120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
               D+ +  +LPTR++EEFRPFIRRLPEFKFWYSVMKST+ A   T+FDCFN+PVFWPI
Sbjct: 92  ----DDGEGPELPTRSNEEFRPFIRRLPEFKFWYSVMKSTVIAMICTMFDCFNVPVFWPI 147

Query: 180 LVLYFITLFIITMKRQIK 197
           LV+YFITLF ITMKRQIK
Sbjct: 148 LVMYFITLFCITMKRQIK 165

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21356291|ref|NP_651362.1| CG11857 [Drosophila melanogaster] gi|7301302|gb|AAF56431.1| CG11857 [Drosophila melanogaster] gi|20151713|gb|AAM11216.1| RE24638p [Drosophila melanogaster] gi|220948254|gb|ACL86670.1| CG11857-PA [synthetic construct] gi|220957496|gb|ACL91291.1| CG11857-PA [synthetic construct]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 119/197 (60%), Gaps = 30/197 (15%)

Query: 1   MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGW 60
           M +  SS   G    K  + + Q YQ+ LD STP+T  RW  A  LL+ F+ RI++ QGW
Sbjct: 1   MMNEDSSAAGGGGVKKFFQRLSQTYQSALDRSTPHTRMRWVFAGFLLLLFVLRIFIYQGW 60

Query: 61  YIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFS 120
           YI+CYALGIY LNLFIAFL+PK D   D ++                             
Sbjct: 61  YIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQ---------------------------- 92

Query: 121 FPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPIL 180
              D D+   LPTR++EEFRPFIRRLPEFKFW SV KSTL     T FD FN+PVFWPIL
Sbjct: 93  --DDEDEGPNLPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPIL 150

Query: 181 VLYFITLFIITMKRQIK 197
           V+YFITLF ITMKRQIK
Sbjct: 151 VMYFITLFCITMKRQIK 167

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712351|ref|XP_003394725.1| PREDICTED: protein RER1-like isoform 1 [Bombus terrestris]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/186 (54%), Positives = 118/186 (63%), Gaps = 34/186 (18%)

Query: 12  NVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYD 71
           NVFS+    I Q YQT LDL TP+   RW+VA  L+  F  RI L +GWYI+ YAL IY 
Sbjct: 14  NVFSQAIGRISQLYQTYLDLWTPHAVSRWTVAFFLVFVFSLRILLSEGWYIVTYALAIYH 73

Query: 72  LNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQL 131
           LNLFIAFL+PK D  +D                                   D+ +  +L
Sbjct: 74  LNLFIAFLTPKIDPGMDF----------------------------------DDGEGPEL 99

Query: 132 PTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIIT 191
           PTR++EEFRPFIRRLPEFKFWYSVMKST+ A   T+FDCFN+PVFWPILV+YFITLF IT
Sbjct: 100 PTRSNEEFRPFIRRLPEFKFWYSVMKSTIIAMICTMFDCFNVPVFWPILVMYFITLFCIT 159

Query: 192 MKRQIK 197
           MKRQIK
Sbjct: 160 MKRQIK 165

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354840|ref|XP_002043904.1| GM17826 [Drosophila sechellia] gi|195573801|ref|XP_002104880.1| GD21194 [Drosophila simulans] gi|194129142|gb|EDW51185.1| GM17826 [Drosophila sechellia] gi|194200807|gb|EDX14383.1| GD21194 [Drosophila simulans]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 119/197 (60%), Gaps = 30/197 (15%)

Query: 1   MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGW 60
           M +  SS   G    K  + + Q YQ+ LD STP+T  RW  A  LL+ F+ RI++ QGW
Sbjct: 1   MMNEDSSAAGGGGVKKFFQRLSQTYQSTLDRSTPHTRMRWVFAGFLLLLFVLRIFIYQGW 60

Query: 61  YIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFS 120
           YI+CYALGIY LNLFIAFL+PK D   D ++                             
Sbjct: 61  YIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQ---------------------------- 92

Query: 121 FPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPIL 180
              D D+   LPTR++EEFRPFIRRLPEFKFW SV KSTL     T FD FN+PVFWPIL
Sbjct: 93  --DDEDEGPNLPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPIL 150

Query: 181 VLYFITLFIITMKRQIK 197
           V+YFITLF ITMKRQIK
Sbjct: 151 VMYFITLFCITMKRQIK 167

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194741058|ref|XP_001953006.1| GF17557 [Drosophila ananassae] gi|190626065|gb|EDV41589.1| GF17557 [Drosophila ananassae]

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 119/197 (60%), Gaps = 30/197 (15%)

Query: 1   MQDFSSSNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGW 60
           M +  SS+ SG    K  + + Q YQ+ LD STP+T  RW  A  LL+ F+ RI++ QGW
Sbjct: 1   MMNEDSSSASGGGVKKFFQRLSQTYQSTLDRSTPHTRLRWVFAGFLLLLFVLRIFVYQGW 60

Query: 61  YIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFS 120
           YI+CYALGIY LNLFIAFL+PK D   D +                              
Sbjct: 61  YIVCYALGIYHLNLFIAFLTPKIDPEFDPYAQ---------------------------- 92

Query: 121 FPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPIL 180
              D D+   LPTR++EEFRPFIRRLPEFKFW SV KST      T FD FN+PVFWPIL
Sbjct: 93  --DDEDEGPNLPTRSNEEFRPFIRRLPEFKFWLSVTKSTAIGLICTFFDFFNVPVFWPIL 150

Query: 181 VLYFITLFIITMKRQIK 197
           V+YFITLF ITMKRQIK
Sbjct: 151 VMYFITLFCITMKRQIK 167

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417628|ref|XP_003491515.1| PREDICTED: protein RER1-like [Bombus impatiens]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/186 (53%), Positives = 117/186 (62%), Gaps = 34/186 (18%)

Query: 12  NVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYD 71
           NVFS+    I Q YQ  LDL TP+   RW+VA  L+  F  RI L +GWYI+ YAL IY 
Sbjct: 14  NVFSQAIGRISQLYQRYLDLWTPHVVSRWTVAFFLVFVFSLRILLSEGWYIVTYALAIYH 73

Query: 72  LNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQL 131
           LNLFIAFL+PK D  +D                                   D+ +  +L
Sbjct: 74  LNLFIAFLTPKIDPGMDF----------------------------------DDGEGPEL 99

Query: 132 PTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIIT 191
           PTR++EEFRPFIRRLPEFKFWYSVMKST+ A   T+FDCFN+PVFWPILV+YFITLF IT
Sbjct: 100 PTRSNEEFRPFIRRLPEFKFWYSVMKSTIIAMICTMFDCFNVPVFWPILVMYFITLFCIT 159

Query: 192 MKRQIK 197
           MKRQIK
Sbjct: 160 MKRQIK 165

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
FB|FBgn0039303	242	CG11857 [Drosophila melanogast	0.204	0.305	0.743	2.9e-44
UNIPROTKB|O15258	196	RER1 "Protein RER1" [Homo sapi	0.216	0.397	0.666	1.6e-24
UNIPROTKB|Q5ZHM5	196	RER1 "Protein RER1" [Gallus ga	0.216	0.397	0.679	1.2e-24
MGI|MGI:1915080	196	Rer1 "RER1 retention in endopl	0.216	0.397	0.653	3.3e-24
RGD|1306324	196	Rer1 "RER1 retention in endopl	0.216	0.397	0.653	3.3e-24
UNIPROTKB|I3LJC8	196	LOC100736849 "Uncharacterized	0.216	0.397	0.641	4.2e-24
UNIPROTKB|F6XF58	196	RER1 "Uncharacterized protein"	0.216	0.397	0.653	5.3e-24
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.216	0.397	0.653	4.2e-24
ZFIN|ZDB-GENE-040426-1494	250	rer1 "RER1 retention in endopl	0.204	0.296	0.675	2.2e-40
UNIPROTKB|Q5T092	158	RER1 "Protein RER1" [Homo sapi	0.191	0.436	0.637	1.3e-20

FB|FBgn0039303 CG11857 [Drosophila melanogaster (taxid:7227)]

 Score = 295 (108.9 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 55/74 (74%), Positives = 60/74 (81%)

Query:   124 DNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLY 183
             D D+   LPTR++EEFRPFIRRLPEFKFW SV KSTL     T FD FN+PVFWPILV+Y
Sbjct:    94 DEDEGPNLPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPILVMY 153

Query:   184 FITLFIITMKRQIK 197
             FITLF ITMKRQIK
Sbjct:   154 FITLFCITMKRQIK 167

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O15258 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 52/78 (66%), Positives = 59/78 (75%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T FD FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPI 149

Query:   180 LVLYFITLFIITMKRQIK 197
             LV+YFI LF ITMKRQIK
Sbjct:   150 LVMYFIMLFCITMKRQIK 167

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZHM5 RER1 "Protein RER1" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 53/78 (67%), Positives = 59/78 (75%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPTR +EEFRPFIRRLPEFKFW+S  K  L A   T F+ FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPI 149

Query:   180 LVLYFITLFIITMKRQIK 197
             LV+YFI LF ITMKRQIK
Sbjct:   150 LVMYFIMLFCITMKRQIK 167

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

MGI|MGI:1915080 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPI 149

Query:   180 LVLYFITLFIITMKRQIK 197
             LV+YFI LF ITMKRQIK
Sbjct:   150 LVMYFIMLFCITMKRQIK 167

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=ISO

RGD|1306324 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPI 149

Query:   180 LVLYFITLFIITMKRQIK 197
             LV+YFI LF ITMKRQIK
Sbjct:   150 LVMYFIMLFCITMKRQIK 167

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA;ISO

GO:0030173 "integral to Golgi membrane" evidence=IEA;ISO

UNIPROTKB|I3LJC8 LOC100736849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 50/78 (64%), Positives = 59/78 (75%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGVLVAMVCTFFEAFNVPVFWPI 149

Query:   180 LVLYFITLFIITMKRQIK 197
             LV+YF+ LF ITMKRQIK
Sbjct:   150 LVMYFVMLFCITMKRQIK 167

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6XF58 RER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMACTFFEAFNVPVFWPI 149

Query:   180 LVLYFITLFIITMKRQIK 197
             LV+YFI LF ITMKRQIK
Sbjct:   150 LVMYFIMLFCITMKRQIK 167

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T F+ FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPI 149

Query:   180 LVLYFITLFIITMKRQIK 197
             LV+YFI LF ITMKRQIK
Sbjct:   150 LVMYFIMLFCITMKRQIK 167

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

ZFIN|ZDB-GENE-040426-1494 rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 50/74 (67%), Positives = 57/74 (77%)

Query:   124 DNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLY 183
             D D+   LPT+ +EEFRPFIRRLPEFKFW+S  K  + A   T FD FN+PVFWPILV+Y
Sbjct:   148 DPDEGPALPTKQNEEFRPFIRRLPEFKFWHSATKGIVIAMICTFFDAFNVPVFWPILVMY 207

Query:   184 FITLFIITMKRQIK 197
             FI LF ITMKRQIK
Sbjct:   208 FIMLFCITMKRQIK 221

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5T092 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 44/69 (63%), Positives = 51/69 (73%)

Query:   120 SFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPI 179
             S   D+DD   LPT+ +EEFRPFIRRLPEFKFW++  K  L A   T FD FN+PVFWPI
Sbjct:    90 SLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPI 149

Query:   180 LVLYFITLF 188
             LV+YFI LF
Sbjct:   150 LVMYFIMLF 158

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZHM5	RER1_CHICK	No assigned EC number	0.5310	0.3961	0.7295	yes	N/A
O15258	RER1_HUMAN	No assigned EC number	0.5254	0.3961	0.7295	yes	N/A
Q5R5U4	RER1_PONAB	No assigned EC number	0.5254	0.3961	0.7295	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	361
pfam03248	175	pfam03248, Rer1, Rer1 family	2e-64
pfam03248	175	pfam03248, Rer1, Rer1 family	6e-44
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	2e-43
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	4e-29

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  202 bits (516), Expect = 2e-64
 Identities = 82/186 (44%), Positives = 109/186 (58%), Gaps = 31/186 (16%)

Query: 12  NVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYD 71
           +  ++ +  + + YQ  LD +TP+T  RW     LL  F+ R+ L QGWY++CYALGIY 
Sbjct: 1   SAVTRFTNKLSRTYQRYLDKTTPHTAYRWIFFLFLLFLFILRVILAQGWYVVCYALGIYL 60

Query: 72  LNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQL 131
           LNLF+AFL+PK D  L+   +                               D ++   L
Sbjct: 61  LNLFLAFLTPKFDPSLEQEDE-------------------------------DVEEGPSL 89

Query: 132 PTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIIT 191
           PT   +EFRPFIRRLPEFKFWYS  ++T+ A F T F  F+IPVFWPIL++YFI LF +T
Sbjct: 90  PTSNDDEFRPFIRRLPEFKFWYSATRATVIALFCTFFSFFDIPVFWPILLMYFIILFFLT 149

Query: 192 MKRQIK 197
           M+RQIK
Sbjct: 150 MRRQIK 155

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  149 bits (378), Expect = 6e-44
 Identities = 59/123 (47%), Positives = 71/123 (57%), Gaps = 31/123 (25%)

Query: 228 DDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFI 287
           ++   LPT   +EFRPFIRRLPEFKFWYS  ++T+ A F T F  F+IPVFWP       
Sbjct: 84  EEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRATVIALFCTFFSFFDIPVFWP------- 136

Query: 288 TLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKY 347
                                   IL++YFI LF +TM+RQIKHMIKY+YVPF  GKPKY
Sbjct: 137 ------------------------ILLMYFIILFFLTMRRQIKHMIKYKYVPFDIGKPKY 172

Query: 348 ASH 350
              
Sbjct: 173 GRK 175

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  148 bits (375), Expect = 2e-43
 Identities = 76/191 (39%), Positives = 97/191 (50%), Gaps = 35/191 (18%)

Query: 7   SNDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYA 66
           S+D+ N+ +K +  +K  YQ  LD   P    RW +   L + F  RI+   GWY+ICY 
Sbjct: 5   SSDTMNLITKMN-DLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYC 63

Query: 67  LGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDND 126
           LGIY LN F+AFL+PK D+                                  SF    D
Sbjct: 64  LGIYLLNAFLAFLTPKFDM----------------------------------SFEQIED 89

Query: 127 DDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFIT 186
           DD         EFRPFIRRLPEFKFWY   ++T  A   + F  F++PVFWPILV+YFI 
Sbjct: 90  DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIF 149

Query: 187 LFIITMKRQIK 197
           L   T +RQI+
Sbjct: 150 LVFYTARRQIQ 160

Length = 180

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  110 bits (277), Expect = 4e-29
 Identities = 55/127 (43%), Positives = 65/127 (51%), Gaps = 31/127 (24%)

Query: 224 QRNNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILV 283
           ++  DDD         EFRPFIRRLPEFKFWY   ++T  A   + F  F++PVFWPILV
Sbjct: 85  EQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILV 144

Query: 284 LYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMIKYRYVPFSWG 343
           +YFI L              FY                  T +RQI+HM KYRY PF  G
Sbjct: 145 VYFIFLV-------------FY------------------TARRQIQHMKKYRYNPFDIG 173

Query: 344 KPKYASH 350
           K KY SH
Sbjct: 174 KKKYKSH 180

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG1688|consensus	188		100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
KOG1688|consensus	188		100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	99.29

>KOG1688|consensus

Probab=100.00  E-value=9.7e-79  Score=545.29  Aligned_cols=177  Identities=59%  Similarity=1.041  Sum_probs=160.7

Q ss_pred             CCCcchHHHHHHHHHHHHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCccc
Q psy9230           8 NDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWL   87 (361)
Q Consensus         8 ~~~~~~~~~~~~k~~~~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l   87 (361)
                      ++.++++.++.++++|+||+||||+|||+..||+++++++++|++||++.|||||||||||||+|||||||||||+||++
T Consensus        11 ~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtPk~Dp~~   90 (188)
T KOG1688|consen   11 GGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTPKVDPEL   90 (188)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCchh
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCCCCCCCCCCccccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhc
Q psy9230          88 DSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTL  167 (361)
Q Consensus        88 ~qd~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tf  167 (361)
                      ||                                                                              
T Consensus        91 ~~------------------------------------------------------------------------------   92 (188)
T KOG1688|consen   91 QD------------------------------------------------------------------------------   92 (188)
T ss_pred             hc------------------------------------------------------------------------------
Confidence            53                                                                              


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccCCCCCCCCCCCCCccccccccccccc
Q psy9230         168 FDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRR  247 (361)
Q Consensus       168 f~~fDIPVFWPILlvYFivLF~lTMrRQI~~~~~~~c~~~~~~~~~y~l~Yll~~P~~~~~~~~~lp~~~~~efrpfirr  247 (361)
                                                                                 .|||+.||++.||||||||||
T Consensus        93 -----------------------------------------------------------~~dg~~Lpt~~~dEFrPFIRR  113 (188)
T KOG1688|consen   93 -----------------------------------------------------------ADDGPSLPTRKSDEFRPFIRR  113 (188)
T ss_pred             -----------------------------------------------------------ccCCCCCCCCCccccchHHHc
Confidence                                                                       134455666667777777777


Q ss_pred             CcchhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHHHHH
Q psy9230         248 LPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKR  327 (361)
Q Consensus       248 lpefkfW~~~~~~~~~~~~~t~f~~fdipVfwPiL~~Yfi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~tm~~  327 (361)
                      |||||||+|+|||+++|+.||+|++||+|||||||++||++|                               |.+||||
T Consensus       114 LPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~l-------------------------------f~ltmrR  162 (188)
T KOG1688|consen  114 LPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVL-------------------------------FFLTMRR  162 (188)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH-------------------------------HHHHHHH
Confidence            777777777777779999999999999999999999999999                               9999999


Q ss_pred             HHHHHHhcccccCCCCCccccCCCC
Q psy9230         328 QIKHMIKYRYVPFSWGKPKYASHED  352 (361)
Q Consensus       328 qi~hmiky~Yvpf~~gk~~y~~~~~  352 (361)
                      ||+|||||||+||+.||++|+++++
T Consensus       163 qI~HMiKyrY~Pf~~gK~~~~~~~~  187 (188)
T KOG1688|consen  163 QIAHMIKYRYIPFDIGKKKYGSHSD  187 (188)
T ss_pred             HHHHHHhhcccccccCchhhhcccc
Confidence            9999999999999999999999886

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=3.3e-78  Score=541.37  Aligned_cols=174  Identities=59%  Similarity=1.101  Sum_probs=156.5

Q ss_pred             hHHHHHHHHHHHHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCcccccCCC
Q psy9230          13 VFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTD   92 (361)
Q Consensus        13 ~~~~~~~k~~~~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l~qd~~   92 (361)
                      +++++.++++++||++|||||||++.||+++++|+++|++||++.|||||||||||||+||+||+|||||+||+++||++
T Consensus         1 ~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~   80 (176)
T PF03248_consen    1 AVSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEE   80 (176)
T ss_pred             CHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCccccccccc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999987531


Q ss_pred             CCCCCCCccccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhcccccc
Q psy9230          93 CTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFN  172 (361)
Q Consensus        93 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fD  172 (361)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (176)
T PF03248_consen   81 --------------------------------------------------------------------------------   80 (176)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccCCCCCCCCCCCCCc--ccccccccccccCcc
Q psy9230         173 IPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPT--RASEEFRPFIRRLPE  250 (361)
Q Consensus       173 IPVFWPILlvYFivLF~lTMrRQI~~~~~~~c~~~~~~~~~y~l~Yll~~P~~~~~~~~~lp~--~~~~efrpfirrlpe  250 (361)
                                                                           |.|||+.||+  ++|||||||+|||||
T Consensus        81 -----------------------------------------------------~~~~g~~Lp~~~~~~~EFrPFiRRlPE  107 (176)
T PF03248_consen   81 -----------------------------------------------------DEEEGPELPTTNENDDEFRPFIRRLPE  107 (176)
T ss_pred             -----------------------------------------------------cccccccCCCCcccccccCCccccchh
Confidence                                                                 2344555666  666777777777777


Q ss_pred             hhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHHHHHHHH
Q psy9230         251 FKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIK  330 (361)
Q Consensus       251 fkfW~~~~~~~~~~~~~t~f~~fdipVfwPiL~~Yfi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~tm~~qi~  330 (361)
                      ||||+++|||+++|++||+|++||||||||||++|||+|                               |++||||||+
T Consensus       108 FkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~l-------------------------------f~~tm~~qI~  156 (176)
T PF03248_consen  108 FKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVL-------------------------------FVLTMKRQIK  156 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH-------------------------------HHHHHHHHHH
Confidence            777777777779999999999999999999999999999                               9999999999


Q ss_pred             HHHhcccccCCCCCccccCC
Q psy9230         331 HMIKYRYVPFSWGKPKYASH  350 (361)
Q Consensus       331 hmiky~Yvpf~~gk~~y~~~  350 (361)
                      |||||||+|||.||++|+++
T Consensus       157 hMiKy~Y~Pf~~gK~~y~~~  176 (176)
T PF03248_consen  157 HMIKYRYVPFDFGKKKYGRK  176 (176)
T ss_pred             HHHHhCCCCccccchhccCC
Confidence            99999999999999999864

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.1e-67  Score=466.95  Aligned_cols=170  Identities=49%  Similarity=0.893  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCcccccCCCC
Q psy9230          14 FSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDC   93 (361)
Q Consensus        14 ~~~~~~k~~~~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l~qd~~~   93 (361)
                      +....+.++++||+||||.+||+..||..+++|+.+||+||....|||+|||+||||+||+|++|||||+||+.||++++
T Consensus        11 ~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~d   90 (180)
T COG5249          11 LITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIEDD   90 (180)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhccc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999886431


Q ss_pred             CCCCCCccccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccc
Q psy9230          94 TPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNI  173 (361)
Q Consensus        94 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDI  173 (361)
                                                        +....+                                        
T Consensus        91 ----------------------------------~eieeg----------------------------------------   96 (180)
T COG5249          91 ----------------------------------DEIEEG----------------------------------------   96 (180)
T ss_pred             ----------------------------------cccccc----------------------------------------
Confidence                                              111111                                        


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccCCCCCCCCCCCCCcccccccccccccCcchhh
Q psy9230         174 PVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKF  253 (361)
Q Consensus       174 PVFWPILlvYFivLF~lTMrRQI~~~~~~~c~~~~~~~~~y~l~Yll~~P~~~~~~~~~lp~~~~~efrpfirrlpefkf  253 (361)
                                                                                    +.||||||||||||||||
T Consensus        97 --------------------------------------------------------------~kd~EFrPFIRrLPEFkF  114 (180)
T COG5249          97 --------------------------------------------------------------EKDNEFRPFIRRLPEFKF  114 (180)
T ss_pred             --------------------------------------------------------------cccchhhHHHHcCchhHH
Confidence                                                                          356666777777777777


Q ss_pred             HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHHHHHHHHHHH
Q psy9230         254 WYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMI  333 (361)
Q Consensus       254 W~~~~~~~~~~~~~t~f~~fdipVfwPiL~~Yfi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~tm~~qi~hmi  333 (361)
                      |+++|+|+++|++.|+|++|||||||||||+|||.|                               +..|+||||+||+
T Consensus       115 Wy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l-------------------------------~f~t~rRqIqHM~  163 (180)
T COG5249         115 WYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFL-------------------------------VFYTARRQIQHMK  163 (180)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHH-------------------------------HHHHHHHHHHHHH
Confidence            777777779999999999999999999999999999                               9999999999999


Q ss_pred             hcccccCCCCCccccCC
Q psy9230         334 KYRYVPFSWGKPKYASH  350 (361)
Q Consensus       334 ky~Yvpf~~gk~~y~~~  350 (361)
                      ||||+|||.||++|++|
T Consensus       164 KYrY~PfdigKkky~sh  180 (180)
T COG5249         164 KYRYNPFDIGKKKYKSH  180 (180)
T ss_pred             HhcCCchhhhhhhhccC
Confidence            99999999999999886

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=4.3e-36  Score=269.90  Aligned_cols=120  Identities=43%  Similarity=0.848  Sum_probs=98.0

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHH-hcCCccCcccccCCCCCCCCCCccccccCccccc
Q psy9230          33 TPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIA-FLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQ  111 (361)
Q Consensus        33 Tpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFia-FLtPk~Dp~l~qd~~~~~~~~~~~~~~~gg~~~~  111 (361)
                      .-|..+-+...+.-++.|.+.||+++.+            ..|++ ...|..+.+.|++ |                   
T Consensus        36 ~lf~~Rv~~~~g~YiVtY~LgIylLnlf------------i~FltP~~Dp~l~~~~~~~-~-------------------   83 (176)
T PF03248_consen   36 FLFLLRVYYLQGWYIVTYALGIYLLNLF------------IAFLTPKFDPELEQDEEDE-E-------------------   83 (176)
T ss_pred             HHHHHHHHHhcceeeehHHHHHHHHHHH------------HHHhCCcCccccccccccc-c-------------------
Confidence            3355556666666677788887776543            34666 4577776655333 3                   


Q ss_pred             ccccccccCCCCCCCCCCCCCC--CCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccccchhhHHHHHHHHHHH
Q psy9230         112 HFTIYRHFSFPPDNDDDMQLPT--RASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFI  189 (361)
Q Consensus       112 ~~~~~~~~~~~~d~~dg~~lP~--~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDIPVFWPILlvYFivLF~  189 (361)
                                     ||+.||+  +++||||||+|||||||||++||||+++|++||+|+++|||||||||++|||+||+
T Consensus        84 ---------------~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~  148 (176)
T PF03248_consen   84 ---------------EGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFV  148 (176)
T ss_pred             ---------------ccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence                           3456777  89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy9230         190 ITMKRQIKVS  199 (361)
Q Consensus       190 lTMrRQI~~~  199 (361)
                      +||||||+|-
T Consensus       149 ~tm~~qI~hM  158 (176)
T PF03248_consen  149 LTMKRQIKHM  158 (176)
T ss_pred             HHHHHHHHHH
Confidence            9999999996

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>KOG1688|consensus

Probab=100.00  E-value=8.5e-36  Score=268.44  Aligned_cols=124  Identities=48%  Similarity=0.845  Sum_probs=105.6

Q ss_pred             HHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHH-hcCCcc-CcccccCCCCCCCCCCcc
Q psy9230          24 RYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIA-FLSPKA-DLWLDSHTDCTPLSCPVK  101 (361)
Q Consensus        24 ~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFia-FLtPk~-Dp~l~qd~~~~~~~~~~~  101 (361)
                      ++-..|=...-|..+-|++.+..++.|.+.||+++-+          +.  |+. =..|.. |.+  +            
T Consensus        42 RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlf----------ia--FLtPk~Dp~~~~~~--d------------   95 (188)
T KOG1688|consen   42 RWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLF----------IA--FLTPKVDPELQDAD--D------------   95 (188)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HH--HhCCCCCchhhccc--C------------
Confidence            4555566667788899999999999999999887643          22  444 357766 433  3            


Q ss_pred             ccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccccchhhHHH
Q psy9230         102 TKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILV  181 (361)
Q Consensus       102 ~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDIPVFWPILl  181 (361)
                                                |+.||++++||||||||||||||||+|+|||+++|++||+|+++|+|||||||+
T Consensus        96 --------------------------g~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl  149 (188)
T KOG1688|consen   96 --------------------------GPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILL  149 (188)
T ss_pred             --------------------------CCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence                                      135899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy9230         182 LYFITLFIITMKRQIKVS  199 (361)
Q Consensus       182 vYFivLF~lTMrRQI~~~  199 (361)
                      +||++||++||||||+|.
T Consensus       150 ~Y~i~lf~ltmrRqI~HM  167 (188)
T KOG1688|consen  150 MYFIVLFFLTMRRQIAHM  167 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999997

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=99.29  E-value=1.6e-12  Score=116.48  Aligned_cols=117  Identities=42%  Similarity=0.725  Sum_probs=92.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCcccccCCCCCCCCCCccccccCccccccc
Q psy9230          34 PYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHF  113 (361)
Q Consensus        34 pyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l~qd~~~~~~~~~~~~~~~gg~~~~~~  113 (361)
                      -|..+-|.+.+..++.|++.+|+++.+-          +.|.=-| .|.+....++|+-++           |.      
T Consensus        46 lf~iRI~~~~gwY~icY~LgiyLLn~fl----------aFLTPKf-dms~eq~e~d~eiee-----------g~------   97 (180)
T COG5249          46 LFCIRIWSTGGWYLICYCLGIYLLNAFL----------AFLTPKF-DMSFEQIEDDDEIEE-----------GE------   97 (180)
T ss_pred             HHHHHHHhccchhhHHHHHHHHHHHHHH----------HHhCCCC-cccHhhhcccccccc-----------cc------
Confidence            4667889999999999999999877653          3222222 232322222333221           10      


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccccchhhHHHHHHHHHHHHHHH
Q psy9230         114 TIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMK  193 (361)
Q Consensus       114 ~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDIPVFWPILlvYFivLF~lTMr  193 (361)
                               .|            |||||||||||||||||++||||++|++.|+|++||||||||||++|||+|+.+|||
T Consensus        98 ---------kd------------~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~r  156 (180)
T COG5249          98 ---------KD------------NEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTAR  156 (180)
T ss_pred             ---------cc------------chhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence                     12            589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy9230         194 RQIKVS  199 (361)
Q Consensus       194 RQI~~~  199 (361)
                      |||||-
T Consensus       157 RqIqHM  162 (180)
T COG5249         157 RQIQHM  162 (180)
T ss_pred             HHHHHH
Confidence            999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 43/319 (13%), Positives = 89/319 (27%), Gaps = 103/319 (32%)

Query: 21  IKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLS 80
           I   + +  D S+       S+ A L     ++ Y           L +           
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--------ENCLLVLL--------- 251

Query: 81  PKADLWLDSHTDCTPLSCPVKTKVT----------GGVIRQHFTIYRH-FSFPPDNDDDM 129
              ++      +   LSC  K  +T                H ++  H  +  PD    +
Sbjct: 252 ---NVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 130 ----------QLPTRA-----------SEEFRPFIRRLPEFKFW---------------Y 153
                      LP              +E  R  +     +  W                
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSL 363

Query: 154 SVMKSTLFATFFTLFDCF----NIP-----VFWPILVLYFITLFIITMKRQIKVSLINMC 204
           +V++   +   F     F    +IP     + W  ++   + + +  + +    SL+   
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVE-- 418

Query: 205 RKESPLVTTYHLQYLLSCPQRNNDDDM--------QLP-TRASEEFRPFIRRLPEFKFWY 255
           ++      +    YL    +  N+  +         +P T  S++  P        +++Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP----PYLDQYFY 474

Query: 256 SV----MKSTLFATFFTLF 270
           S     +K+       TLF
Sbjct: 475 SHIGHHLKNIEHPERMTLF 493

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00