Psyllid ID: psy9232

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
MAALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTMEFQVVTGAEDSSSDRY
ccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHcccHHHHHcccccccccHHHccccccccccccHHHHHHHHHHHcccccccccEEEccccccccccc
ccccccccccEEEEHHEEEEcEEcccccccccccccccccccHHHHHHHHHHccccHHHHHcccccccEEEEEEEHHHHcccccccEEEEEEEEEEEEEEccEEEEEEEcccccccccc
maaldcpdcgvvscQFVFVRNLEYVCkerghcivdvtrrnqcqacrfskclqvkmnrdvtrlgfwyPSFLLRVVSsrflfgqespawMCFVRCVEIRLQVNTMEFQVVtgaedsssdry
maaldcpdcgvVSCQFVFVRNLEYVCKERGHCIvdvtrrnqcqacrfskclqvkmnrDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTMefqvvtgaedsssdry
MAALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTMEFQVVTGAEDSSSDRY
***LDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTMEFQVVT**********
**ALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD*************************************************************
MAALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTMEFQVV***********
**ALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTMEFQVVTGA********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTMEFQVVTGAEDSSSDRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query119 2.2.26 [Sep-21-2011]
P18102 452 Protein tailless OS=Droso yes N/A 0.352 0.092 0.522 3e-08
O16845 450 Protein tailless OS=Droso N/A N/A 0.352 0.093 0.522 3e-08
Q91379 385 Nuclear receptor subfamil yes N/A 0.352 0.109 0.568 4e-08
Q9Y466 385 Nuclear receptor subfamil yes N/A 0.352 0.109 0.568 5e-08
Q64104 385 Nuclear receptor subfamil yes N/A 0.352 0.109 0.568 5e-08
P49844 776 Glucocorticoid receptor O N/A N/A 0.428 0.065 0.438 2e-07
Q95267 776 Glucocorticoid receptor O N/A N/A 0.428 0.065 0.438 2e-07
O13186 777 Glucocorticoid receptor O N/A N/A 0.428 0.065 0.438 2e-07
P06536 795 Glucocorticoid receptor O yes N/A 0.428 0.064 0.438 2e-07
Q5R9P5 777 Glucocorticoid receptor O no N/A 0.428 0.065 0.438 2e-07
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1 Back     alignment and function desciption
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 20  RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
           R+ +YVCK  ++G C+VD T RNQC+ACR  KC +V MN+D  +
Sbjct: 64  RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
Orphan receptor that binds DNA as a monomer to hormone response elements (HRE) containing an extended core motif half-site sequence 5'-AAGTCA-3' in which the 5' flanking nucleotides participate in determining receptor specificity. This receptor binds to the consensus sequence [AG][AG]AAGTCAA. Plays a key role in the establishment of non-metameric domains at the anterior and posterior poles of the embryo. It may also play a role in the nervous system. The maternal terminal pathway activates the tll gene in the termini; TLL activity then represses segmentation and activates terminal-specific genes in these domains. Involved in the regulation of early eye development. In the embryonic visual system anlage drives cells to optic lobe as opposed to Bolwig's organ fate.
Drosophila melanogaster (taxid: 7227)
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1 Back     alignment and function description
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus GN=NR2E1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=2 SV=1 Back     alignment and function description
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus GN=Nr2e1 PE=1 SV=1 Back     alignment and function description
>sp|P49844|GCR_XENLA Glucocorticoid receptor OS=Xenopus laevis GN=nr3c1 PE=2 SV=1 Back     alignment and function description
>sp|Q95267|GCR_TUPBE Glucocorticoid receptor OS=Tupaia belangeri GN=NR3C1 PE=2 SV=1 Back     alignment and function description
>sp|O13186|GCR_SAIBB Glucocorticoid receptor OS=Saimiri boliviensis boliviensis GN=NR3C1 PE=2 SV=1 Back     alignment and function description
>sp|P06536|GCR_RAT Glucocorticoid receptor OS=Rattus norvegicus GN=Nr3c1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R9P5|GCR_PONAB Glucocorticoid receptor OS=Pongo abelii GN=NR3C1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query119
189237797 426 PREDICTED: similar to PNR-like [Triboliu 0.352 0.098 0.809 1e-13
158302179 430 AGAP001348-PA [Anopheles gambiae str. PE 0.327 0.090 0.769 2e-12
312371094 486 hypothetical protein AND_22643 [Anophele 0.352 0.086 0.714 2e-12
322792862 397 hypothetical protein SINV_10759 [Solenop 0.352 0.105 0.761 3e-12
270008322 357 hypothetical protein TcasGA2_TC030676 [T 0.336 0.112 0.85 3e-12
443688970 390 hypothetical protein CAPTEDRAFT_53417, p 0.352 0.107 0.761 3e-12
357612132 431 putative PNR-like protein [Danaus plexip 0.352 0.097 0.714 4e-12
156556067 422 PNR-like [Aedes aegypti] gi|403182930|gb 0.352 0.099 0.714 6e-12
328787581 394 PREDICTED: nuclear receptor subfamily 2 0.336 0.101 0.8 6e-12
332025246 393 Nuclear receptor subfamily 2 group E mem 0.336 0.101 0.8 7e-12
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum] Back     alignment and taxonomy information
 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/42 (80%), Positives = 35/42 (83%)

Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
          RNLEYVCKE G CIVDVTRRNQCQACRF KCLQV M RD  +
Sbjct: 47 RNLEYVCKENGRCIVDVTRRNQCQACRFKKCLQVNMKRDAVQ 88

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST] gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta] Back     alignment and taxonomy information
>gi|357612132|gb|EHJ67823.1| putative PNR-like protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti] gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis mellifera] Back     alignment and taxonomy information
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query119
WB|WBGene00021417 283 nhr-236 [Caenorhabditis elegan 0.369 0.155 0.659 2.5e-12
UNIPROTKB|Q91379 385 NR2E1 "Nuclear receptor subfam 0.352 0.109 0.568 2.8e-08
UNIPROTKB|F1MN68 385 NR2E1 "Uncharacterized protein 0.352 0.109 0.568 2.8e-08
UNIPROTKB|F1PD89 385 NR2E1 "Uncharacterized protein 0.352 0.109 0.568 2.8e-08
UNIPROTKB|Q9Y466 385 NR2E1 "Nuclear receptor subfam 0.352 0.109 0.568 2.8e-08
UNIPROTKB|I3LU21 385 NR2E1 "Uncharacterized protein 0.352 0.109 0.568 2.8e-08
MGI|MGI:1100526 385 Nr2e1 "nuclear receptor subfam 0.352 0.109 0.568 2.8e-08
ZFIN|ZDB-GENE-040801-127 396 nr2e1 "nuclear receptor subfam 0.352 0.106 0.568 3e-08
UNIPROTKB|F1Q176 412 NR2E1 "Uncharacterized protein 0.352 0.101 0.568 3.2e-08
UNIPROTKB|F1RT26 421 NR2E1 "Uncharacterized protein 0.352 0.099 0.568 3.3e-08
WB|WBGene00021417 nhr-236 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 167 (63.8 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 31/47 (65%), Positives = 34/47 (72%)

Query:    20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT---RLG 63
             RNL Y CKE G C++DVTRRNQCQACRF KC+ V MNR      RLG
Sbjct:    43 RNLRYSCKESGDCVIDVTRRNQCQACRFQKCITVAMNRHAVQHERLG 89
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0003707 "steroid hormone receptor activity" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
UNIPROTKB|Q91379 NR2E1 "Nuclear receptor subfamily 2 group E member 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN68 NR2E1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PD89 NR2E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y466 NR2E1 "Nuclear receptor subfamily 2 group E member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LU21 NR2E1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1100526 Nr2e1 "nuclear receptor subfamily 2, group E, member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-127 nr2e1 "nuclear receptor subfamily 2, group E, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q176 NR2E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RT26 NR2E1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query119
cd0716478 cd07164, NR_DBD_PNR_like_1, DNA-binding domain of 7e-18
cd0691672 cd06916, NR_DBD_like, DNA-binding domain of nuclea 2e-13
cd0715473 cd07154, NR_DBD_PNR_like, The DNA-binding domain o 2e-12
cd0716392 cd07163, NR_DBD_TLX, DNA-binding domain of Tailles 1e-11
pfam0010570 pfam00105, zf-C4, Zinc finger, C4 type (two domain 3e-11
cd0696185 cd06961, NR_DBD_TR, DNA-binding domain of thyroid 1e-10
smart0039970 smart00399, ZnF_C4, c4 zinc finger in nuclear horm 2e-08
cd0696076 cd06960, NR_DBD_HNF4A, DNA-binding domain of hepto 3e-08
cd0696975 cd06969, NR_DBD_NGFI-B, DNA-binding domain of the 3e-08
cd0695873 cd06958, NR_DBD_COUP_TF, DNA-binding domain of chi 4e-08
cd0697092 cd06970, NR_DBD_PNR, DNA-binding domain of the pho 4e-08
cd0716581 cd07165, NR_DBD_DmE78_like, DNA-binding domain of 4e-08
cd0716793 cd07167, NR_DBD_Lrh-1_like, The DNA-binding domain 4e-08
cd0717278 cd07172, NR_DBD_GR_PR, DNA-binding domain of gluco 1e-07
cd0717097 cd07170, NR_DBD_ERR, DNA-binding domain of estroge 2e-07
cd0696895 cd06968, NR_DBD_ROR, DNA-binding domain of Retinoi 2e-07
cd0696485 cd06964, NR_DBD_RAR, DNA-binding domain of retinoi 2e-07
cd0695677 cd06956, NR_DBD_RXR, DNA-binding domain of retinoi 3e-07
cd0717182 cd07171, NR_DBD_ER, DNA-binding domain of estrogen 5e-07
cd0716990 cd07169, NR_DBD_GCNF_like, DNA-binding domain of G 6e-07
cd0696584 cd06965, NR_DBD_Ppar, DNA-binding domain of peroxi 2e-06
cd0696373 cd06963, NR_DBD_GR_like, The DNA binding domain of 2e-06
cd0695782 cd06957, NR_DBD_PNR_like_2, DNA-binding domain of 2e-06
cd0715575 cd07155, NR_DBD_ER_like, DNA-binding domain of est 9e-06
cd0696787 cd06967, NR_DBD_TR2_like, DNA-binding domain of th 9e-06
cd0715873 cd07158, NR_DBD_Ppar_like, The DNA-binding domain 1e-05
cd0715786 cd07157, 2DBD_NR_DBD1, The first DNA-binding domai 2e-05
cd0716689 cd07166, NR_DBD_REV_ERB, DNA-binding domain of REV 2e-05
cd0717974 cd07179, 2DBD_NR_DBD2, The second DNA-binding doma 3e-05
cd0715672 cd07156, NR_DBD_VDR_like, The DNA-binding domain o 3e-05
cd07160101 cd07160, NR_DBD_LXR, DNA-binding domain of Liver X 8e-05
cd0716287 cd07162, NR_DBD_PXR, DNA-binding domain of pregnan 8e-05
cd0696284 cd06962, NR_DBD_FXR, DNA-binding domain of Farneso 2e-04
cd0717382 cd07173, NR_DBD_AR, DNA-binding domain of androgen 4e-04
cd0716890 cd07168, NR_DBD_DHR4_like, DNA-binding domain of e 4e-04
cd0716191 cd07161, NR_DBD_EcR, DNA-binding domain of Ecdyson 4e-04
cd0696694 cd06966, NR_DBD_CAR, DNA-binding domain of constit 0.001
>gnl|CDD|143538 cd07164, NR_DBD_PNR_like_1, DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers Back     alignment and domain information 
 Score = 71.7 bits (176), Expect = 7e-18
 Identities = 32/39 (82%), Positives = 33/39 (84%)

Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
          RNL YVCKE G C+VDV RRNQCQACRF KCLQV MNRD
Sbjct: 31 RNLAYVCKENGSCVVDVARRNQCQACRFKKCLQVNMNRD 69

DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Length = 78
>gnl|CDD|143512 cd06916, NR_DBD_like, DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143529 cd07154, NR_DBD_PNR_like, The DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) nuclear receptor-like family Back     alignment and domain information
>gnl|CDD|143537 cd07163, NR_DBD_TLX, DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|201004 pfam00105, zf-C4, Zinc finger, C4 type (two domains) Back     alignment and domain information
>gnl|CDD|143519 cd06961, NR_DBD_TR, DNA-binding domain of thyroid hormone receptors (TRs) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|197701 smart00399, ZnF_C4, c4 zinc finger in nuclear hormone receptors Back     alignment and domain information
>gnl|CDD|143518 cd06960, NR_DBD_HNF4A, DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143527 cd06969, NR_DBD_NGFI-B, DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B Back     alignment and domain information
>gnl|CDD|143516 cd06958, NR_DBD_COUP_TF, DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143528 cd06970, NR_DBD_PNR, DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143539 cd07165, NR_DBD_DmE78_like, DNA-binding domain of Drosophila ecdysone-induced protein 78 (E78) like is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143541 cd07167, NR_DBD_Lrh-1_like, The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143546 cd07172, NR_DBD_GR_PR, DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143544 cd07170, NR_DBD_ERR, DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143526 cd06968, NR_DBD_ROR, DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143522 cd06964, NR_DBD_RAR, DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143514 cd06956, NR_DBD_RXR, DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143545 cd07171, NR_DBD_ER, DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143543 cd07169, NR_DBD_GCNF_like, DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143523 cd06965, NR_DBD_Ppar, DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143521 cd06963, NR_DBD_GR_like, The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143515 cd06957, NR_DBD_PNR_like_2, DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143530 cd07155, NR_DBD_ER_like, DNA-binding domain of estrogen receptor (ER) and estrogen related receptors (ERR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143525 cd06967, NR_DBD_TR2_like, DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143533 cd07158, NR_DBD_Ppar_like, The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family Back     alignment and domain information
>gnl|CDD|143532 cd07157, 2DBD_NR_DBD1, The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143540 cd07166, NR_DBD_REV_ERB, DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143548 cd07179, 2DBD_NR_DBD2, The second DNA-binding domain (DBD) of the 2DBD nuclear receptor is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143531 cd07156, NR_DBD_VDR_like, The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143534 cd07160, NR_DBD_LXR, DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143536 cd07162, NR_DBD_PXR, DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143520 cd06962, NR_DBD_FXR, DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143547 cd07173, NR_DBD_AR, DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143542 cd07168, NR_DBD_DHR4_like, DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143535 cd07161, NR_DBD_EcR, DNA-binding domain of Ecdysone receptor (ECR) family is composed of two C4-type zinc fingers Back     alignment and domain information
>gnl|CDD|143524 cd06966, NR_DBD_CAR, DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 119
KOG4215|consensus 432 99.9
cd0695782 NR_DBD_PNR_like_2 DNA-binding domain of the photor 99.88
cd0696485 NR_DBD_RAR DNA-binding domain of retinoic acid rec 99.88
cd0715575 NR_DBD_ER_like DNA-binding domain of estrogen rece 99.88
cd0696185 NR_DBD_TR DNA-binding domain of thyroid hormone re 99.88
cd0695677 NR_DBD_RXR DNA-binding domain of retinoid X recept 99.88
cd0696787 NR_DBD_TR2_like DNA-binding domain of the TR2 and 99.88
cd0716478 NR_DBD_PNR_like_1 DNA-binding domain of the photor 99.88
cd0697092 NR_DBD_PNR DNA-binding domain of the photoreceptor 99.88
cd0696076 NR_DBD_HNF4A DNA-binding domain of heptocyte nucle 99.88
cd0716392 NR_DBD_TLX DNA-binding domain of Tailless (TLX) is 99.87
cd0716581 NR_DBD_DmE78_like DNA-binding domain of Drosophila 99.87
cd0717097 NR_DBD_ERR DNA-binding domain of estrogen related 99.87
cd07160101 NR_DBD_LXR DNA-binding domain of Liver X receptors 99.87
cd0716689 NR_DBD_REV_ERB DNA-binding domain of REV-ERB recep 99.87
cd0716890 NR_DBD_DHR4_like DNA-binding domain of ecdysone-in 99.87
cd0696284 NR_DBD_FXR DNA-binding domain of Farnesoid X recep 99.87
cd0696975 NR_DBD_NGFI-B DNA-binding domain of the orphan nuc 99.87
cd0717182 NR_DBD_ER DNA-binding domain of estrogen receptors 99.87
cd0716793 NR_DBD_Lrh-1_like The DNA-binding domain of Lrh-1 99.87
cd0716990 NR_DBD_GCNF_like DNA-binding domain of Germ cell n 99.87
cd0691672 NR_DBD_like DNA-binding domain of nuclear receptor 99.87
cd0696895 NR_DBD_ROR DNA-binding domain of Retinoid-related 99.86
cd0715473 NR_DBD_PNR_like The DNA-binding domain of the phot 99.86
cd0716191 NR_DBD_EcR DNA-binding domain of Ecdysone receptor 99.86
cd0695873 NR_DBD_COUP_TF DNA-binding domain of chicken ovalb 99.86
cd0715672 NR_DBD_VDR_like The DNA-binding domain of vitamin 99.86
cd0717974 2DBD_NR_DBD2 The second DNA-binding domain (DBD) o 99.86
cd0715786 2DBD_NR_DBD1 The first DNA-binding domain (DBD) of 99.86
cd0696373 NR_DBD_GR_like The DNA binding domain of GR_like n 99.86
cd0696694 NR_DBD_CAR DNA-binding domain of constitutive andr 99.85
cd0695973 NR_DBD_EcR_like The DNA-binding domain of Ecdysone 99.85
cd0715873 NR_DBD_Ppar_like The DNA-binding domain of peroxis 99.85
cd0696584 NR_DBD_Ppar DNA-binding domain of peroxisome proli 99.85
cd0717278 NR_DBD_GR_PR DNA-binding domain of glucocorticoid 99.85
cd06955107 NR_DBD_VDR DNA-binding domain of vitamin D recepto 99.85
cd0716287 NR_DBD_PXR DNA-binding domain of pregnane X recept 99.85
KOG4217|consensus 605 99.84
cd0717382 NR_DBD_AR DNA-binding domain of androgen receptor 99.84
KOG4216|consensus 479 99.82
smart0039970 ZnF_C4 c4 zinc finger in nuclear hormone receptors 99.81
KOG4846|consensus 538 99.81
KOG4218|consensus 475 99.78
PF0010570 zf-C4: Zinc finger, C4 type (two domains); InterPr 99.75
>KOG4215|consensus Back     alignment and domain information 
Probab=99.90  E-value=3.8e-25  Score=168.28  Aligned_cols=65  Identities=29%  Similarity=0.635  Sum_probs=63.1

Q ss_pred             CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCC
Q psy9232           2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP   67 (119)
Q Consensus         2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~   67 (119)
                      ||.+|+|||+| |||+|+++..|.|+.+.+|.|++..|+.||+|||+||+.+||.++|||.+|+..
T Consensus        35 GA~SCdGCKGF-FRRSVrk~~~YtCRF~k~C~VDKdkRNaCRyCRfqKC~~aGMK~eAiQnERDrI   99 (432)
T KOG4215|consen   35 GAISCDGCKGF-FRRSVRKNHQYTCRFNKQCVVDKDKRNACRYCRFQKCVRAGMKREAIQNERDRI   99 (432)
T ss_pred             ceeecCcchHH-HHHHHHhcceeeeeccccccccchhhhhhhHhhHHHHHHhcccHHhhhcccccc
Confidence            89999999999 999999999999999999999999999999999999999999999999998844

>cd06957 NR_DBD_PNR_like_2 DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06964 NR_DBD_RAR DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07155 NR_DBD_ER_like DNA-binding domain of estrogen receptor (ER) and estrogen related receptors (ERR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06961 NR_DBD_TR DNA-binding domain of thyroid hormone receptors (TRs) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06956 NR_DBD_RXR DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06967 NR_DBD_TR2_like DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07164 NR_DBD_PNR_like_1 DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06970 NR_DBD_PNR DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06960 NR_DBD_HNF4A DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07163 NR_DBD_TLX DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07165 NR_DBD_DmE78_like DNA-binding domain of Drosophila ecdysone-induced protein 78 (E78) like is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07170 NR_DBD_ERR DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07166 NR_DBD_REV_ERB DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07168 NR_DBD_DHR4_like DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06962 NR_DBD_FXR DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06969 NR_DBD_NGFI-B DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B Back     alignment and domain information
>cd07171 NR_DBD_ER DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07167 NR_DBD_Lrh-1_like The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07169 NR_DBD_GCNF_like DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06916 NR_DBD_like DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06968 NR_DBD_ROR DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07154 NR_DBD_PNR_like The DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) nuclear receptor-like family Back     alignment and domain information
>cd07161 NR_DBD_EcR DNA-binding domain of Ecdysone receptor (ECR) family is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06958 NR_DBD_COUP_TF DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07156 NR_DBD_VDR_like The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07179 2DBD_NR_DBD2 The second DNA-binding domain (DBD) of the 2DBD nuclear receptor is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07157 2DBD_NR_DBD1 The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06963 NR_DBD_GR_like The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06966 NR_DBD_CAR DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06959 NR_DBD_EcR_like The DNA-binding domain of Ecdysone receptor (EcR) like nuclear receptor family is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07158 NR_DBD_Ppar_like The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family Back     alignment and domain information
>cd06965 NR_DBD_Ppar DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07172 NR_DBD_GR_PR DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd06955 NR_DBD_VDR DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers Back     alignment and domain information
>cd07162 NR_DBD_PXR DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers Back     alignment and domain information
>KOG4217|consensus Back     alignment and domain information
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers Back     alignment and domain information
>KOG4216|consensus Back     alignment and domain information
>smart00399 ZnF_C4 c4 zinc finger in nuclear hormone receptors Back     alignment and domain information
>KOG4846|consensus Back     alignment and domain information
>KOG4218|consensus Back     alignment and domain information
>PF00105 zf-C4: Zinc finger, C4 type (two domains); InterPro: IPR001628 Steroid or nuclear hormone receptors constitute an important superfamily of transcription regulators that are involved in widely diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query119
3dzu_A 467 Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Comp 4e-07
2ebl_A89 Solution Structure Of The Zinc Finger, C4-type Doma 2e-06
1lat_A82 Glucocorticoid Receptor MutantDNA COMPLEX Length = 2e-06
4hn5_A117 Gr Dna Binding Domain - Tslp Ngre Complex Length = 2e-06
3g6t_A91 Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34 L 3e-06
1r4o_A92 Crystallographic Analysis Of The Interaction Of The 3e-06
1r4r_B92 Crystallographic Analysis Of The Interaction Of The 4e-06
3g9p_B90 Gr Dna Binding Domain:sgk 16bp Complex-7 Length = 9 4e-06
1glu_A81 Crystallographic Analysis Of The Interaction Of The 4e-06
2gda_A72 Refined Solution Structure Of The Glucocorticoid Re 6e-06
1gdc_A72 Refined Solution Structure Of The Glucocorticoid Re 6e-06
1rgd_A71 Structure Refinement Of The Glucocorticoid Receptor 7e-06
3m9e_A105 Thyroid Hormone Beta Dna Binding Domain Homodimer W 7e-06
4hn6_A114 Gr Dna Binding Domain R460d/d462r - Tslp Ngre Compl 1e-05
2nll_B103 Retinoid X Receptor-Thyroid Hormone Receptor Dna-Bi 1e-05
2han_A93 Structural Basis Of Heterodimeric Ecdysteroid Recep 2e-05
1r0o_A86 Crystal Structure Of The Heterodimeric Ecdysone Rec 2e-05
1ynw_B99 Crystal Structure Of Vitamin D Receptor And 9-Cis R 5e-05
1r0n_A81 Crystal Structure Of Heterodimeric Ecdsyone Recepto 5e-05
1dsz_B85 Structure Of The RxrRAR DNA-Binding Domain Heterodi 6e-05
1by4_A82 Structure And Mechanism Of The Homodimeric Assembly 6e-05
1cit_A89 Dna-Binding Mechanism Of The Monomeric Orphan Nucle 9e-05
2c7a_A78 Structure Of The Progesterone Receptor-Dna Complex 2e-04
1lo1_A98 Estrogen Related Receptor 2 Dna Binding Domain In C 3e-04
2a66_A113 Human Liver Receptor Homologue Dna-Binding Domain ( 3e-04
3dzu_D 419 Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Comp 4e-04
1hlz_A94 Crystal Structure Of The Orphan Nuclear Receptor Re 4e-04
2ff0_A102 Solution Structure Of Steroidogenic Factor 1 Dna Bi 4e-04
2nll_A66 Retinoid X Receptor-Thyroid Hormone Receptor Dna-Bi 4e-04
1rxr_A83 High Resolution Solution Structure Of The Retinoid 5e-04
1dsz_A86 Structure Of The RxrRAR DNA-Binding Domain Heterodi 6e-04
1hra_A80 The Solution Structure Of The Human Retinoic Acid R 7e-04
1hcq_A84 The Crystal Structure Of The Estrogen Receptor Dna- 8e-04
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2 Peptide Length = 467 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 20  RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
           ++L Y C++   C++D  +RN+CQ CR+ KCL + M R+  +
Sbjct: 170 KDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQ 211
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of Human Coup Transcription Factor 1 Length = 89 Back     alignment and structure
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX Length = 82 Back     alignment and structure
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex Length = 117 Back     alignment and structure
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34 Length = 91 Back     alignment and structure
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The Glucocorticoid Receptor With Dna Length = 92 Back     alignment and structure
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The Glucocorticoid Receptor With Dna Length = 92 Back     alignment and structure
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7 Length = 90 Back     alignment and structure
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The Glucocorticoid Receptor With Dna Length = 81 Back     alignment and structure
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor Dna-Binding Domain Length = 72 Back     alignment and structure
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor Dna-Binding Domain Length = 72 Back     alignment and structure
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna Binding Domain From Nmr Data By Relaxation Matrix Calculations Length = 71 Back     alignment and structure
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre Length = 105 Back     alignment and structure
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex Length = 114 Back     alignment and structure
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding Domain Heterodimer Bound To Thyroid Response Element Dna Length = 103 Back     alignment and structure
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor Interaction With Natural Response Element Hsp27 Gene Promoter Length = 93 Back     alignment and structure
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor Dna-Binding Complex Length = 86 Back     alignment and structure
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic Acid Receptor Dna-Binding Domains Bound To A Dr3 Response Element Length = 99 Back     alignment and structure
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna Binding Complex Length = 81 Back     alignment and structure
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In Complex With The Retinoic Acid Response Element Dr1 Length = 85 Back     alignment and structure
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of The Rxr On Dna Length = 82 Back     alignment and structure
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear Receptor Ngfi-B Length = 89 Back     alignment and structure
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex Length = 78 Back     alignment and structure
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In Complex With Dna Length = 98 Back     alignment and structure
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1 Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter Length = 113 Back     alignment and structure
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2 Peptide Length = 419 Back     alignment and structure
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev- Erb(Alpha) Dna-Binding Domain Bound To Its Cognate Response Element Length = 94 Back     alignment and structure
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding Domain Bound To Its Target Sequence In The Inhibin Alpha- Subunit Promoter Length = 102 Back     alignment and structure
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding Domain Heterodimer Bound To Thyroid Response Element Dna Length = 66 Back     alignment and structure
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X Receptor Dna Binding Domain, Nmr, 20 Structure Length = 83 Back     alignment and structure
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In Complex With The Retinoic Acid Response Element Dr1 Length = 86 Back     alignment and structure
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid Receptor- Beta Dna-Binding Domain Length = 80 Back     alignment and structure
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor Dna-Binding Domain Bound To Dna: How Receptors Discriminate Between Their Response Elements Length = 84 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query119
2ebl_A89 COUP transcription factor 1; DNA-binding, metal-bi 4e-15
2han_A93 Protein ultraspiracle; transcription regulation, t 8e-15
1dsz_A86 RAR-alpha, retinoic acid receptor alpha; RAR, nucl 1e-14
1dsz_B85 RXR-alpha, retinoic acid receptor RXR-alpha; RAR, 2e-14
1hcq_A84 Protein (estrogen receptor); protein-DNA complex, 2e-14
1ynw_B99 Retinoic acid receptor RXR-alpha, retinoid X recep 3e-14
3cbb_A78 HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DN 3e-14
3g9m_A90 Glucocorticoid receptor; glucocorticoid, DNA-bindi 5e-14
2a66_A113 Orphan nuclear receptor NR5A2; protein-DNA complex 1e-13
1cit_A89 NGFI-B, protein (orphan nuclear receptor NGFI-B); 1e-13
1lo1_A98 Steroid hormone receptor ERR2; estrogen related re 2e-13
1a6y_A94 Orphan nuclear receptor NR1D1; orphan receptor, DN 3e-13
1r4i_A105 Androgen receptor; AR, steroid receptor, protein-D 5e-13
2han_B119 Ecdysone receptor; transcription regulation, trans 2e-12
3dzy_A 467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 6e-12
1kb2_A110 Vitamin D3 receptor; VDR, nuclear receptor, protei 2e-11
2nll_B103 Protein (thyroid hormone receptor); complex (trans 3e-10
3dzy_D 419 Peroxisome proliferator-activated receptor gamma; 4e-10
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens} Length = 89 Back     alignment and structure
 Score = 64.3 bits (157), Expect = 4e-15
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
          RNL Y C+   +C +D   RNQCQ CR  KCL+V M R+  + G
Sbjct: 40 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRG 83
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 Length = 93 Back     alignment and structure
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A Length = 86 Back     alignment and structure
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A* Length = 85 Back     alignment and structure
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A Length = 84 Back     alignment and structure
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2 Length = 99 Back     alignment and structure
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens} Length = 78 Back     alignment and structure
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ... Length = 90 Back     alignment and structure
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A Length = 113 Back     alignment and structure
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2 Length = 89 Back     alignment and structure
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2 Length = 98 Back     alignment and structure
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A Length = 94 Back     alignment and structure
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2 Length = 105 Back     alignment and structure
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B Length = 119 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A Length = 110 Back     alignment and structure
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A* Length = 103 Back     alignment and structure
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A Length = 419 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query119
3cbb_A78 HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DN 99.91
2ebl_A89 COUP transcription factor 1; DNA-binding, metal-bi 99.91
1dsz_B85 RXR-alpha, retinoic acid receptor RXR-alpha; RAR, 99.91
1ynw_B99 Retinoic acid receptor RXR-alpha, retinoid X recep 99.9
1dsz_A86 RAR-alpha, retinoic acid receptor alpha; RAR, nucl 99.9
1hcq_A84 Protein (estrogen receptor); protein-DNA complex, 99.9
2han_A93 Protein ultraspiracle; transcription regulation, t 99.9
1a6y_A94 Orphan nuclear receptor NR1D1; orphan receptor, DN 99.89
1cit_A89 NGFI-B, protein (orphan nuclear receptor NGFI-B); 99.89
1lo1_A98 Steroid hormone receptor ERR2; estrogen related re 99.89
1kb2_A110 Vitamin D3 receptor; VDR, nuclear receptor, protei 99.89
2a66_A113 Orphan nuclear receptor NR5A2; protein-DNA complex 99.88
4hn5_A117 Glucocorticoid receptor; glucocorticoid receptor, 99.88
3g9m_A90 Glucocorticoid receptor; glucocorticoid, DNA-bindi 99.88
1r4i_A105 Androgen receptor; AR, steroid receptor, protein-D 99.87
2han_B119 Ecdysone receptor; transcription regulation, trans 99.87
2nll_B103 Protein (thyroid hormone receptor); complex (trans 99.87
3dzy_A 467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 99.85
3dzy_D 419 Peroxisome proliferator-activated receptor gamma; 99.77
2lze_A87 A primordial catalytic fold generated by in vitro 99.72
1lbd_A 282 RXR_LBD, retinoid X receptor; transcription factor 97.09
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens} Back     alignment and structure
Probab=99.91  E-value=2.6e-26  Score=141.75  Aligned_cols=63  Identities=29%  Similarity=0.608  Sum_probs=59.6

Q ss_pred             CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCC
Q psy9232           2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW   65 (119)
Q Consensus         2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~   65 (119)
                      ||++|+||++| |||+|..+..|.|+.+++|.|++..++.|++|||+|||++||++++||.+|+
T Consensus        16 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd   78 (78)
T 3cbb_A           16 GASSCDGCKGF-FRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD   78 (78)
T ss_dssp             TEECCHHHHHH-HHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred             CCcchhhhcee-eeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence            89999999999 9999999999999999999999999999999999999999999999998874
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens} Back     alignment and structure
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A* Back     alignment and structure
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2 Back     alignment and structure
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A Back     alignment and structure
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A Back     alignment and structure
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 Back     alignment and structure
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A Back     alignment and structure
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2 Back     alignment and structure
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2 Back     alignment and structure
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A Back     alignment and structure
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A Back     alignment and structure
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A* Back     alignment and structure
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ... Back     alignment and structure
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2 Back     alignment and structure
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B Back     alignment and structure
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A* Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Back     alignment and structure
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A Back     alignment and structure
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct} Back     alignment and structure
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 119
d2hanb183 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding do 4e-08
d1kb2a_89 g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-bindin 6e-08
d1r4ia_74 g.39.1.2 (A:) Androgen receptor {Rat (Rattus norve 1e-07
d1lo1a_90 g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-bi 1e-07
d1dszb_84 g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA- 4e-07
d1lata_71 g.39.1.2 (A:) Glucocorticoid receptor DNA-binding 4e-07
d1cita_89 g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-b 1e-06
d1a6ya_78 g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-b 2e-06
d1hcqa_74 g.39.1.2 (A:) Estrogen receptor DNA-binding domain 4e-06
d2nllb_103 g.39.1.2 (B:) Thyroid hormone receptor (TR-beta) D 5e-06
d1dsza_75 g.39.1.2 (A:) Retinoic acid receptor DNA-binding d 7e-06
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 83 Back     information, alignment and structure

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Nuclear receptor
domain: Ecdysone receptor DNA-binding domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.0 bits (106), Expect = 4e-08
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 12 VSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
             +    ++  Y CK    C +D+  R +CQ CR  KCL V M  +
Sbjct: 25 GFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPE 71
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 Back     information, alignment and structure
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 89 Back     information, alignment and structure
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human and chicken (Homo sapiens) and (Gallus gallus) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query119
d1dszb_84 Retinoid X receptor (RXR-alpha) DNA-binding domain 99.89
d1dsza_75 Retinoic acid receptor DNA-binding domain {Human ( 99.88
d2hanb183 Ecdysone receptor DNA-binding domain {Fruit fly (D 99.88
d1lo1a_90 Steroid hormone receptor Err2 DNA-binding domain { 99.88
d1kb2a_89 Vitamin D3 receptor, VDR, DNA-binding domain {Huma 99.88
d1a6ya_78 Orphan nuclear receptor reverb DNA-binding domain 99.88
d1r4ia_74 Androgen receptor {Rat (Rattus norvegicus) [TaxId: 99.86
d1cita_89 Orphan nuclear receptor NGFI-B DNA-binding domain 99.86
d1lata_71 Glucocorticoid receptor DNA-binding domain {Rat (R 99.84
d2nllb_103 Thyroid hormone receptor (TR-beta) DNA-binding dom 99.84
d1hcqa_74 Estrogen receptor DNA-binding domain {Human and ch 99.83
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Nuclear receptor
domain: Retinoid X receptor (RXR-alpha) DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-25  Score=136.79  Aligned_cols=63  Identities=29%  Similarity=0.724  Sum_probs=60.9

Q ss_pred             CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCC
Q psy9232           2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW   65 (119)
Q Consensus         2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~   65 (119)
                      ||++|+||++| |||+|..+..|.|..+++|.++...+..|++|||+|||++||++++||.+|+
T Consensus        21 Gv~sC~aCk~F-FRR~v~~~~~~~c~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~Rd   83 (84)
T d1dszb_          21 GVYSCEGCKGF-FKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ   83 (84)
T ss_dssp             TEECCHHHHHH-HHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCC
T ss_pred             CHHHHHHhHHH-HHHHHhcCCCeeccCCCCcccCCCCCccCCCCccHHHHHcCCChHHcccccC
Confidence            89999999999 9999999999999999999999999999999999999999999999998875
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human and chicken (Homo sapiens) and (Gallus gallus) [TaxId: 9606]} Back     information, alignment and structure