Psyllid ID: psy9257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MSSIYPSLEDMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEccccccEEEEEEEEcccEEEEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHcccccEEEEEEcccccEEEEEEccccccccEEEccccEEEcccccHHHHcccccccEEEEEccEEEccccHHHHHHHHHHcccEEEEEEEcHHHHHHHHHcccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccEEcccccccccccccccccEcccccccccccccEcccccccccccccccccccccccccccccccccccccHHHHHHHccccHHccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccEEcEcccccccEEEEEEccccEEEEEcccccccccEEEEEEccEEEEEEEccccccHHHccccccEEEEEccEEcccccHHHHHHHHHHcccccEEEEEEcccccEEEEEEccccccccEEEEccEEEEEccccHHHHccccccEEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEEHHHHHHHHHccccHHHHHcccccc
Coil and Loop (DISEMBL)
mssiypsledmtfHQLTIAqneyfskqttsssfssppppvyqtsshtspnaynnppspyhsanpppyyqhpsvpshpsvptfpsapiypsappqeshspyyysdiranvptggspvpsypqgsypsnpyqaqnsypsvpnqpqapntypsmpnqlqapngfypltssqqasqaslpypinplasnkpsapqppaysvqpshntayptaplvpstiatapsappaniedatrsthpttatapsvppaihdatrstpspiiapsvpptnrdtiRSALvplypsldnymgLEVASELINAYAREnaaneresdaagntvarqaprdsctmiaplsssgsglkkayvTNGIRELVLCKdasgliglrvCAINEGVFVCLVergspaslvglrfgdqilsingetvagynMKQVHKILkaapvnnirvvirdrplertvtlhrdssghfgfhfnkGQIVSLVKDSsaarngllvnhnilevnganvvgLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI
Flexible Loop (DISEMBL)
mssiypsledMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPspiiapsvpptnrdTIRSALVPLYPSLDNYMGLEVASELINAYARENAaneresdaagntvarqaprdsctmiaplsssgsglkKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIlkaapvnnirvvirDRPLERTVTLhrdssghfgfhfNKGQIVSLVKDSSAARNGLLVnhnilevnganvVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFnlvkdkmdhsi
Low Complexity Region (SEG)
MSSIYPSLEDMTFHQLTIAQNEYFSKQTTsssfssppppVYQTSSHTspnaynnppspyhsanpppyyqhpsvpshpsvptfpsAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTssqqasqasLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVpstiatapsappaNIEDatrsthpttatapsvppaIHDATRSTPSPIIAPSVPPTNRDTIRSALVPLYPSLDNYMGLEVASELInayarenaaneresdaaGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI
Disordered region (IsUnstruct)
************FHQLTI************************************************************************************************************************************************************************************************************************************************************IRSALVPLYPSLDNYMGLEVASELINAYA**************************************LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLV*********GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKK**************
Disordered Region (DISOPRED)
******S***********************************************************************************************************************************************************************************************************************************************************************************DNY*G*************************************************************ELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKM****
Disordered Region (DISEMBL)
MSSIYPSLEDMTFHQLTIAQNEYF***********************SPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSALVPLYPSLDNYMGLEVASELINAYARE*******************PRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI
Disordered Region (DISPRO)
***IYPSLEDMTFHQLTIAQNEYFS*******FSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQ**********PTFPS*P**P******SHSPYYYSDIRANVPTGGSPVPSYP***YPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVP***RDTIRSALVPLYPSLDNYMGLEVASELINAYARENAANER***************DSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSIYPSLEDMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSALVPLYPSLDNYMGxxxxxxxxxxxxxxxxxxxxxSDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
O00560	298	Syntenin-1 OS=Homo sapien	yes	N/A	0.466	0.828	0.494	3e-69
O08992	299	Syntenin-1 OS=Mus musculu	yes	N/A	0.466	0.826	0.498	9e-69
Q9JI92	300	Syntenin-1 OS=Rattus norv	yes	N/A	0.466	0.823	0.486	5e-68
Q99JZ0	292	Syntenin-2 OS=Mus musculu	no	N/A	0.469	0.852	0.492	4e-64
Q9H190	292	Syntenin-2 OS=Homo sapien	no	N/A	0.460	0.835	0.476	8e-63
Q5RD33	749	Amyloid beta A4 precursor	no	N/A	0.311	0.220	0.289	4e-12
O35431	750	Amyloid beta A4 precursor	no	N/A	0.309	0.218	0.290	4e-12
P98084	750	Amyloid beta A4 precursor	no	N/A	0.309	0.218	0.290	5e-12
Q99767	749	Amyloid beta A4 precursor	no	N/A	0.309	0.218	0.290	6e-12
O35430	839	Amyloid beta A4 precursor	no	N/A	0.305	0.193	0.281	7e-11

>sp|O00560|SDCB1_HUMAN Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1

 Score =  263 bits (671), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/253 (49%), Positives = 176/253 (69%), Gaps = 6/253 (2%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
           LYP L  YMGL +  E I    R N A    +   G  VAR  P     M+AP++ +  G
Sbjct: 49  LYPELSQYMGLSLNEEEI----RANVAVVSGAPLQGQLVAR--PSSINYMVAPVTGNDVG 102

Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
           +++A +  GIRE++LCKD  G IGLR+ +I+ G+FV LV+  SPASLVGLRFGDQ+L IN
Sbjct: 103 IRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQIN 162

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
           GE  AG++  + HK+LK A    I + IRDRP ERT+T+H+DS+GH GF F  G+I S+V
Sbjct: 163 GENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIV 222

Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
           KDSSAARNGLL  HNI E+NG NV+GLKD ++ + +   G+V+T+T++P  +++H++K+M
Sbjct: 223 KDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRM 282

Query: 518 SFNLVKDKMDHSI 530
           + +++K  MDH+I
Sbjct: 283 APSIMKSLMDHTI 295

Seems to function as an adapter protein. In adherens junctions may function to couple syndecans to cytoskeletal proteins or signaling components. Seems to couple transcription factor SOX4 to the IL-5 receptor (IL5RA). May also play a role in vesicular trafficking. Seems to be required for the targeting of TGFA to the cell surface in the early secretory pathway.
Homo sapiens (taxid: 9606)

>sp|O08992|SDCB1_MOUSE Syntenin-1 OS=Mus musculus GN=Sdcbp PE=2 SV=1

 Score =  261 bits (667), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 126/253 (49%), Positives = 178/253 (70%), Gaps = 6/253 (2%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
           LYP L  YMGL     L  A   E+      + A G  VAR  P     M+AP++ + +G
Sbjct: 50  LYPELSQYMGLS----LNEAEICESMPMVSGAPAQGQLVAR--PSSVNYMVAPVTGNDAG 103

Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
           +++A +  GIRE++LCKD  G IGLR+ +I+ G+FV LV+  SPASLVGLRFGDQ+L IN
Sbjct: 104 IRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQIN 163

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
           GE  AG++  + HK+LK A    I + IRDRP ERTVT+H+DSSGH GF F  G+I S+V
Sbjct: 164 GENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIV 223

Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
           KDSSAARNGLL +H+I E+NG NV+GLKD ++ + +   G+V+T+T++PT +++H++K+M
Sbjct: 224 KDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHIIKRM 283

Query: 518 SFNLVKDKMDHSI 530
           + +++K  MDH+I
Sbjct: 284 APSIMKSLMDHTI 296

Seems to function as an adapter protein. In adherens junctions may function to couple syndecans to cytoskeletal proteins or signaling components. Seems to couple transcription factor SOX4 to the IL-5 receptor (IL5RA). May also play a role in vesicular trafficking. Seems to be required for the targeting of TGFA to the cell surface in the early secretory pathway.

Mus musculus (taxid: 10090)

>sp|Q9JI92|SDCB1_RAT Syntenin-1 OS=Rattus norvegicus GN=Sdcbp PE=1 SV=1

 Score =  259 bits (661), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 177/253 (69%), Gaps = 6/253 (2%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
           LYP L  YMGL ++     A   EN      +   G  VAR  P     M+AP++ + +G
Sbjct: 51  LYPELSQYMGLSLS----EAEICENMPVVSGAPTQGQLVAR--PSSVNYMVAPVTGNDAG 104

Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
           +++A +  GIRE++LCKD  G IGLR+ +++ G+FV LV+  SPASLVGLRFGDQ+L IN
Sbjct: 105 IRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQIN 164

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
           GE  AG++  + HK+LK A    I + IRDRP ERTVT+H+DSSGH GF F  G+I S+V
Sbjct: 165 GENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIV 224

Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
           KDSSAARNGLL +H+I E+NG NV+GLKD ++ + +   G+V+T+T++P  +++H++K+M
Sbjct: 225 KDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPAFIFEHIIKRM 284

Query: 518 SFNLVKDKMDHSI 530
           + +++K  MDH+I
Sbjct: 285 APSIMKSLMDHTI 297

Seems to function as an adapter protein. In adherens junctions may function to couple syndecans to cytoskeletal proteins or signaling components. Seems to couple transcription factor SOX4 to the IL-5 receptor (IL5RA). May also play a role in vesicular trafficking. Seems to be required for the targeting of TGFA to the cell surface in the early secretory pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q99JZ0|SDCB2_MOUSE Syntenin-2 OS=Mus musculus GN=Sdcbp2 PE=2 SV=1

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 127/258 (49%), Positives = 175/258 (67%), Gaps = 9/258 (3%)

Query: 273 SALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLS 332
           S L P    L++YMGL ++S+ +    ++N     +SD     V    P     ++AP+S
Sbjct: 41  SELYPNLAELESYMGLSLSSQEV----QKNLTQIPDSDNM--VVTSPGPGQ---VVAPVS 91

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
            +  G+ +A +  G+RE+ LCKD  G  GLR+ A+++G+FV LV+  +PASLVGLRFGDQ
Sbjct: 92  GNNLGILRAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQ 151

Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQ 452
           IL I+G   AG+N  + HK+LK A    I +VIRDRP +RTVT+H+DSSG  GF   KG+
Sbjct: 152 ILQIDGCDCAGWNTHKAHKVLKKASAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGK 211

Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQH 512
           IVS+VK SSAARNGLL NH + EVNG NV+GLKDK++ E +   G V+TLT+IPT +Y+H
Sbjct: 212 IVSVVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEH 271

Query: 513 MMKKMSFNLVKDKMDHSI 530
           M+K++S  L+   MDHSI
Sbjct: 272 MIKRLSPLLLHHTMDHSI 289

Mus musculus (taxid: 10090)

>sp|Q9H190|SDCB2_HUMAN Syntenin-2 OS=Homo sapiens GN=SDCBP2 PE=2 SV=2

 Score =  241 bits (616), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 122/256 (47%), Positives = 177/256 (69%), Gaps = 12/256 (4%)

Query: 278 LYP---SLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSS 334
           LYP    L+NYMGL ++S+ +    +E+     E D+    V+   P     M+AP++  
Sbjct: 43  LYPNLAELENYMGLSLSSQEV----QESLLQIPEGDS--TAVSGPGP---GQMVAPVTGY 93

Query: 335 GSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQIL 394
             G+++A +  G+RE+ LCKD  G  GLR+  +++G+FV LV+  +PASLVGLRFGDQ+L
Sbjct: 94  SLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLL 153

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIV 454
            I+G   AG++  + H+++K A  + I VV+RDRP +RTVT+H+DS GH GF   KG+IV
Sbjct: 154 QIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIV 213

Query: 455 SLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMM 514
           SLVK SSAARNGLL NH + EV+G NV+GLKDK+++E +   G+V+TLT+IP+ +Y+HM+
Sbjct: 214 SLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMV 273

Query: 515 KKMSFNLVKDKMDHSI 530
           KK+   L+   MDHSI
Sbjct: 274 KKLPPVLLHHTMDHSI 289

Homo sapiens (taxid: 9606)

>sp|Q5RD33|APBA2_PONAB Amyloid beta A4 precursor protein-binding family A member 2 OS=Pongo abelii GN=APBA2 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 347 IRELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGET 400
            +EL L K    ++G+ V     G     V +  +  G PA+  G L  GDQI+SING +
Sbjct: 566 CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTS 625

Query: 401 VAGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVK 458
           + G  +     I+K       +++ I   P   TV + R D     GF    G I SL++
Sbjct: 626 LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMR 685

Query: 459 DSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
              A R G+ V H I+E+NG +VV    +++++A+      + +  +P +M++
Sbjct: 686 GGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 738

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Pongo abelii (taxid: 9601)

>sp|O35431|APBA2_RAT Amyloid beta A4 precursor protein-binding family A member 2 OS=Rattus norvegicus GN=Apba2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           +EL L K    ++G+ V     G     V +  +  G PA+  G L  GDQI+SING ++
Sbjct: 568 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSL 627

Query: 402 AGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKD 459
            G  +     I+K       +++ I   P   TV + R D     GF    G I SL++ 
Sbjct: 628 VGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRG 687

Query: 460 SSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
             A R G+ V H I+E+NG +VV    +++++A+      + +  +P +M++
Sbjct: 688 GIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 739

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Rattus norvegicus (taxid: 10116)

>sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-binding family A member 2 OS=Mus musculus GN=Apba2 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           +EL L K    ++G+ V     G     V +  +  G PA+  G L  GDQI+SING ++
Sbjct: 568 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSL 627

Query: 402 AGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKD 459
            G  +     I+K       +++ I   P   TV + R D     GF    G I SL++ 
Sbjct: 628 VGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRG 687

Query: 460 SSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
             A R G+ V H I+E+NG +VV    +++++A+      + +  +P +M++
Sbjct: 688 GIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 739

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Mus musculus (taxid: 10090)

>sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-binding family A member 2 OS=Homo sapiens GN=APBA2 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           +EL L K    ++G+ V     G     V +  +  G PA+  G L  GDQI+SING ++
Sbjct: 567 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSL 626

Query: 402 AGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKD 459
            G  +     I+K       +++ I   P   TV + R D     GF    G I SL++ 
Sbjct: 627 VGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRG 686

Query: 460 SSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
             A R G+ V H I+E+NG +VV    +++++A+      + +  +P +M++
Sbjct: 687 GIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 738

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Homo sapiens (taxid: 9606)

>sp|O35430|APBA1_RAT Amyloid beta A4 precursor protein-binding family A member 1 OS=Rattus norvegicus GN=Apba1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           +++ + K    ++G+ +     G     V +  +  G PA   G L  GDQI+SING ++
Sbjct: 657 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 716

Query: 402 AGYNMKQVHKILKAAPVNNIRV---VIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLV 457
            G  +     I+K    N  RV   ++R  P+  TV + R D     GF    G I SL+
Sbjct: 717 VGLPLSTCQSIIKGLK-NQSRVKLNIVRCPPV-TTVLIRRPDLRYQLGFSVQNGIICSLM 774

Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
           +   A R G+ V H I+E+NG +VV    ++++  +      + +  +P +MY+
Sbjct: 775 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYR 828

Putative function in synaptic vesicle exocytosis by binding to Munc18-1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-AAP.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
332021083	306	Syntenin-1 [Acromyrmex echinatior]	0.469	0.813	0.566	2e-79
307186271	304	Syntenin-1 [Camponotus floridanus]	0.473	0.825	0.571	3e-79
350426285	301	PREDICTED: syntenin-1-like isoform 1 [Bo	0.462	0.813	0.568	1e-78
340723620	301	PREDICTED: syntenin-1-like [Bombus terre	0.462	0.813	0.564	1e-78
350426287	303	PREDICTED: syntenin-1-like isoform 2 [Bo	0.471	0.825	0.571	1e-78
383857626	304	PREDICTED: syntenin-1-like isoform 1 [Me	0.494	0.861	0.566	6e-76
321474497	304	hypothetical protein DAPPUDRAFT_187655 [	0.471	0.822	0.560	2e-75
383857628	306	PREDICTED: syntenin-1-like isoform 2 [Me	0.484	0.839	0.552	3e-75
332380580	322	syntenin [Penaeus monodon]	0.479	0.788	0.558	3e-75
332380576	322	syntenin [Penaeus monodon]	0.479	0.788	0.558	7e-75

>gi|332021083|gb|EGI61470.1| Syntenin-1 [Acromyrmex echinatior]

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/256 (56%), Positives = 187/256 (73%), Gaps = 7/256 (2%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDS----CTMIAPLSS 333
           LYPSL +YMGLE+  E I     E A   R++    N +A  +   +      MIAPLS 
Sbjct: 50  LYPSLGDYMGLELNEETIAQNMPEYALATRQN---ANNIALTSTNITRSPLAGMIAPLSG 106

Query: 334 SGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQI 393
               L+KAYVTNGIREL LCKDA G +G+RV AIN G+FVCLV + SPA++ GLRFGDQI
Sbjct: 107 QSMALQKAYVTNGIRELTLCKDADGKVGVRVHAINNGIFVCLVSQNSPAAMAGLRFGDQI 166

Query: 394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQI 453
           LSIN   VAGY+M QVHK+ + A VN I+V +RDRP ERTVT+H+DS G+ GF F  G+I
Sbjct: 167 LSINDICVAGYSMDQVHKLFRNADVNGIKVAVRDRPFERTVTMHKDSMGYVGFQFKNGKI 226

Query: 454 VSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
           ++LVKD+SAARNGLL +H ILE+NG NVVG+KDK++   ++KGG ++T+T+IP+ +Y HM
Sbjct: 227 IALVKDTSAARNGLLTDHQILEINGKNVVGMKDKDVTTEIDKGGDIITVTIIPSYIYDHM 286

Query: 514 MKKMSFNLVKDKMDHS 529
           +KKMS +L+K  MDHS
Sbjct: 287 VKKMSSSLLKSFMDHS 302

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186271|gb|EFN71934.1| Syntenin-1 [Camponotus floridanus]

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/252 (57%), Positives = 189/252 (75%), Gaps = 1/252 (0%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
           LYPSL +YMGLE+  E I     E A  +R+ + +  T+          ++APLS     
Sbjct: 50  LYPSLGDYMGLELNEETIAQNMPEYALAKRQ-NTSDMTLTSPTYNSLTGIVAPLSGQSVA 108

Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
           L+KA+VTNGIREL+LCKDA G IG+RV AIN G+FVCLV + SPA++ GLRFGDQIL+IN
Sbjct: 109 LQKAHVTNGIRELILCKDADGKIGVRVHAINNGIFVCLVSQNSPAAMAGLRFGDQILNIN 168

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
              VAGY+M QVHK+L+ A  N IR+ IRDRPLERTVT+H+DS G+ GF F  G+I++LV
Sbjct: 169 DVCVAGYSMDQVHKLLRNANTNGIRMAIRDRPLERTVTMHKDSMGYIGFQFKNGKIIALV 228

Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
           KDSSAARNGLL +H ILE+NG NVVG+KDK++   +E GG+++T+T+IP+ +Y HM+KKM
Sbjct: 229 KDSSAARNGLLTDHQILEINGKNVVGMKDKDITTEIENGGNIITVTIIPSYIYDHMVKKM 288

Query: 518 SFNLVKDKMDHS 529
           S +L+K+ MDHS
Sbjct: 289 SSSLLKNLMDHS 300

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426285|ref|XP_003494391.1| PREDICTED: syntenin-1-like isoform 1 [Bombus impatiens]

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/255 (56%), Positives = 185/255 (72%), Gaps = 10/255 (3%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDS---CTMIAPLSSS 334
           LYPSL  YMGLE+  E+I       A N  E       +  + P  S     M+APLS  
Sbjct: 50  LYPSLGEYMGLELTEEMI-------AQNMPEYSHVKRNMMVRTPVTSGPLAGMVAPLSGQ 102

Query: 335 GSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQIL 394
             GL++A VTNGIREL+LCKD  G IG+RV  ++ G+FVCLV + SPA+L GLRFGDQIL
Sbjct: 103 SLGLQRAQVTNGIRELILCKDKDGKIGMRVNNVDNGIFVCLVRQNSPAALAGLRFGDQIL 162

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIV 454
           SIN  +VAGY M+QVHK+LK A +N I+V++RDRP ERTVT+H+D   + GF F  G+IV
Sbjct: 163 SINDVSVAGYTMEQVHKMLKNADINGIKVIVRDRPFERTVTMHKDRIKYIGFQFRNGKIV 222

Query: 455 SLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMM 514
           SL+KDSSAA+NGLL NH ILEVNG NV+GLKDKE+ E + KGGS++TLT+IP+ ++ HM+
Sbjct: 223 SLIKDSSAAKNGLLTNHQILEVNGKNVIGLKDKEVTEEIGKGGSIITLTIIPSYIFDHMI 282

Query: 515 KKMSFNLVKDKMDHS 529
           KKM+ +L+K  MDHS
Sbjct: 283 KKMNNSLLKTLMDHS 297

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723620|ref|XP_003400187.1| PREDICTED: syntenin-1-like [Bombus terrestris]

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/255 (56%), Positives = 184/255 (72%), Gaps = 10/255 (3%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDS---CTMIAPLSSS 334
           LYPSL  YMGLE+  E+I       A N  E       +    P  S     M+APLS  
Sbjct: 50  LYPSLGEYMGLELTEEII-------AQNMPEYSRVKQNMMVHTPVTSGPLAGMVAPLSGQ 102

Query: 335 GSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQIL 394
             GL++A VTNGIREL+LCKD  G IG+RV  ++ G+FVCLV + SPA+L GLRFGDQIL
Sbjct: 103 SLGLQRAQVTNGIRELILCKDKDGKIGMRVNNVDNGIFVCLVRQNSPAALAGLRFGDQIL 162

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIV 454
           SIN  +VAGY MKQVHKI + A +N I+V++RDRP ERTVT+H++   + GF F  G+IV
Sbjct: 163 SINDVSVAGYTMKQVHKIFRNADINGIKVIVRDRPFERTVTMHKNRIKYIGFQFRNGKIV 222

Query: 455 SLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMM 514
           SL+KDSSAA+NGLL NH ILEVNG NV+GLKDKE+ E +EKGG+++TLT+IP+ ++ HM+
Sbjct: 223 SLIKDSSAAKNGLLTNHQILEVNGKNVIGLKDKEVTEEIEKGGNIITLTIIPSYIFDHMI 282

Query: 515 KKMSFNLVKDKMDHS 529
           KKM+ +L+K  MDHS
Sbjct: 283 KKMNSSLLKTLMDHS 297

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426287|ref|XP_003494392.1| PREDICTED: syntenin-1-like isoform 2 [Bombus impatiens]

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/252 (57%), Positives = 184/252 (73%), Gaps = 2/252 (0%)

Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
           LYPSL  YMGLE+  E+I     E +  +R       T     P     M+APLS    G
Sbjct: 50  LYPSLGEYMGLELTEEMIAQNMPEYSHVKRNVSDRTLTNLHSGPL--AGMVAPLSGQSLG 107

Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
           L++A VTNGIREL+LCKD  G IG+RV  ++ G+FVCLV + SPA+L GLRFGDQILSIN
Sbjct: 108 LQRAQVTNGIRELILCKDKDGKIGMRVNNVDNGIFVCLVRQNSPAALAGLRFGDQILSIN 167

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
             +VAGY M+QVHK+LK A +N I+V++RDRP ERTVT+H+D   + GF F  G+IVSL+
Sbjct: 168 DVSVAGYTMEQVHKMLKNADINGIKVIVRDRPFERTVTMHKDRIKYIGFQFRNGKIVSLI 227

Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
           KDSSAA+NGLL NH ILEVNG NV+GLKDKE+ E + KGGS++TLT+IP+ ++ HM+KKM
Sbjct: 228 KDSSAAKNGLLTNHQILEVNGKNVIGLKDKEVTEEIGKGGSIITLTIIPSYIFDHMIKKM 287

Query: 518 SFNLVKDKMDHS 529
           + +L+K  MDHS
Sbjct: 288 NNSLLKTLMDHS 299

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857626|ref|XP_003704305.1| PREDICTED: syntenin-1-like isoform 1 [Megachile rotundata]

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 153/270 (56%), Positives = 195/270 (72%), Gaps = 8/270 (2%)

Query: 261 PSVPPTNRDTIRSALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQA 320
           PS P  N     S+ VPLYPSL  YMGLE+  E I       +   R+S     T A   
Sbjct: 40  PSAPVCN-----SSSVPLYPSLGEYMGLELTEETIAKNMSAYSLVNRQSMTVDVTAA-SG 93

Query: 321 PRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGS 380
           P     MIAP+S    GL++A VTNGIREL+LCKD  G IGLRV A+N G+FVCLV + S
Sbjct: 94  PL--AGMIAPISGQSLGLQRAQVTNGIRELILCKDKDGKIGLRVHAVNNGIFVCLVSQNS 151

Query: 381 PASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS 440
           PA+L GLRFGDQILSIN  TVAGY M+QVHK+L+ A +N+IRVV+RDRP ERTVT+H++S
Sbjct: 152 PAALAGLRFGDQILSINNVTVAGYTMEQVHKMLRNADINDIRVVVRDRPFERTVTMHKNS 211

Query: 441 SGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL 500
           +G+ GF F  G+I +LVKDSSAARNGLL +H ILEVNG NV+G+KDKE+   +E GG+++
Sbjct: 212 TGYIGFQFKNGKITALVKDSSAARNGLLTDHQILEVNGKNVIGMKDKEITAEIENGGNII 271

Query: 501 TLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
           T+T+IP+ +Y HM+K M+ +L+K  MDHS+
Sbjct: 272 TITIIPSYIYDHMIKSMNSSLLKTLMDHSV 301

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321474497|gb|EFX85462.1| hypothetical protein DAPPUDRAFT_187655 [Daphnia pulex]

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/255 (56%), Positives = 185/255 (72%), Gaps = 5/255 (1%)

Query: 278 LYPSLDNYMGLEVASELI--NAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSG 335
           LYPSL+++MG+E+ SE++  N  A   A +        N+VA   P  S  M+APLS   
Sbjct: 50  LYPSLNDFMGMEITSEMLSANQVALFPAQSVTTVAVTSNSVA---PVSSFGMVAPLSGQS 106

Query: 336 SGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILS 395
            GL +  VT+GIRELVLCK + G IG+R  A+++G+FV LV+ GSPA+L GLRFGDQIL 
Sbjct: 107 LGLARGQVTHGIRELVLCKGSDGKIGVRCQAVSKGIFVSLVQSGSPAALAGLRFGDQILQ 166

Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVS 455
           INGE VAGY+M +VH I K A VN+I V +RDRP ER++TLH+DS  H GF + +G I S
Sbjct: 167 INGENVAGYSMDKVHNIFKKAGVNSIHVAVRDRPFERSITLHKDSFNHVGFTYKEGCITS 226

Query: 456 LVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMK 515
           LVKDSSAARNGLL +HN+LEVNG NVVGLKDKE+   ME  G+ +TLT++P  +Y+HM+K
Sbjct: 227 LVKDSSAARNGLLTDHNLLEVNGQNVVGLKDKEIGRIMEGAGACVTLTVMPKFLYEHMIK 286

Query: 516 KMSFNLVKDKMDHSI 530
            MS +L+K  MDHS+
Sbjct: 287 NMSNSLLKKAMDHSV 301

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857628|ref|XP_003704306.1| PREDICTED: syntenin-1-like isoform 2 [Megachile rotundata]

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/277 (55%), Positives = 199/277 (71%), Gaps = 20/277 (7%)

Query: 261 PSVPPTNRDTIRSALVPLYPSLDNYMGLEVASELI----NAYA---RENAANERESDAAG 313
           PS P  N     S+ VPLYPSL  YMGLE+  E I    +AY+   R++  N    +   
Sbjct: 40  PSAPVCN-----SSSVPLYPSLGEYMGLELTEETIAKNMSAYSLVNRQSVGNIWNLNFTS 94

Query: 314 NTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFV 373
             +A         MIAP+S    GL++A VTNGIREL+LCKD  G IGLRV A+N G+FV
Sbjct: 95  GPLA--------GMIAPISGQSLGLQRAQVTNGIRELILCKDKDGKIGLRVHAVNNGIFV 146

Query: 374 CLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT 433
           CLV + SPA+L GLRFGDQILSIN  TVAGY M+QVHK+L+ A +N+IRVV+RDRP ERT
Sbjct: 147 CLVSQNSPAALAGLRFGDQILSINNVTVAGYTMEQVHKMLRNADINDIRVVVRDRPFERT 206

Query: 434 VTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAM 493
           VT+H++S+G+ GF F  G+I +LVKDSSAARNGLL +H ILEVNG NV+G+KDKE+   +
Sbjct: 207 VTMHKNSTGYIGFQFKNGKITALVKDSSAARNGLLTDHQILEVNGKNVIGMKDKEITAEI 266

Query: 494 EKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
           E GG+++T+T+IP+ +Y HM+K M+ +L+K  MDHS+
Sbjct: 267 ENGGNIITITIIPSYIYDHMIKSMNSSLLKTLMDHSV 303

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332380580|gb|AEE65457.1| syntenin [Penaeus monodon]

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/265 (55%), Positives = 190/265 (71%), Gaps = 11/265 (4%)

Query: 272 RSALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDS------C 325
           +++L  LYPSL +YMGLE   E+I A   E  A    S     TVA  AP          
Sbjct: 60  QNSLAHLYPSLGDYMGLEFTDEVIAANMPEYLA---VSQVQPGTVAV-APTSGPVSVVPS 115

Query: 326 TMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLV 385
            M+AP+S +  GL +A VTN IRE+ LCKD+ G +G+RV AIN+GVFVCLV++ SPA+L 
Sbjct: 116 GMVAPISGASPGLYRAQVTNSIREITLCKDSEGKVGMRVKAINKGVFVCLVKKNSPAALA 175

Query: 386 GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFG 445
           GLRFGDQIL IN E VAGY+M++VH +LK +P N I + IRDRP ERTVTLH+DS+GH G
Sbjct: 176 GLRFGDQILQINSENVAGYSMEKVHDMLKKSPTNGISLAIRDRPFERTVTLHKDSTGHIG 235

Query: 446 FHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
           F F  G+I +LVKDSSAARNGLL +H++LEVNG NVVGLKDKE+   + + G V+T+T++
Sbjct: 236 FQFRDGEITALVKDSSAARNGLLTDHHLLEVNGQNVVGLKDKEVSAIINECGQVVTVTIM 295

Query: 506 PTSMYQHMMKKMSFNLVKDKMDHSI 530
           P+ +Y+HMMK M+ +L K  MDHSI
Sbjct: 296 PSFVYKHMMKHMASSL-KKFMDHSI 319

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332380576|gb|AEE65455.1| syntenin [Penaeus monodon]

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 148/265 (55%), Positives = 189/265 (71%), Gaps = 11/265 (4%)

Query: 272 RSALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDS------C 325
           +++L  LYPSL +YMGLE   E+I A   E  A    S     TVA  AP          
Sbjct: 60  QNSLAHLYPSLGDYMGLEFTDEVIAANMPEYLA---VSQVQPGTVAV-APTSGPVSVVPS 115

Query: 326 TMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLV 385
            M+AP+S +  GL +A VTN IRE  LCKD+ G +G+RV AIN+GVFVCLV++ SPA+L 
Sbjct: 116 GMVAPISGASPGLYRAQVTNSIRETTLCKDSEGKVGMRVKAINKGVFVCLVKKNSPAALA 175

Query: 386 GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFG 445
           GLRFGDQIL IN E VAGY+M++VH +LK +P N I + IRDRP ERTVTLH+DS+GH G
Sbjct: 176 GLRFGDQILQINSENVAGYSMEKVHDMLKKSPTNGISLAIRDRPFERTVTLHKDSTGHIG 235

Query: 446 FHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
           F F  G+I +LVKDSSAARNGLL +H++LEVNG NVVGLKDKE+   + + G V+T+T++
Sbjct: 236 FQFRDGEITALVKDSSAARNGLLTDHHLLEVNGQNVVGLKDKEVSAIINECGQVVTVTIM 295

Query: 506 PTSMYQHMMKKMSFNLVKDKMDHSI 530
           P+ +Y+HMMK M+ +L K  MDHSI
Sbjct: 296 PSFVYKHMMKHMASSL-KKFMDHSI 319

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
UNIPROTKB|Q3SZA6	298	SDCBP "Uncharacterized protein	0.511	0.909	0.453	3.3e-65
MGI|MGI:1337026	299	Sdcbp "syndecan binding protei	0.471	0.836	0.486	4.2e-65
UNIPROTKB|O00560	298	SDCBP "Syntenin-1" [Homo sapie	0.511	0.909	0.457	6.8e-65
RGD|621497	300	Sdcbp "syndecan binding protei	0.471	0.833	0.478	4.8e-64
UNIPROTKB|F1RT83	296	SDCBP "Uncharacterized protein	0.469	0.841	0.478	7.7e-64
UNIPROTKB|Q5ZHM8	294	SDCBP "Uncharacterized protein	0.505	0.911	0.447	1.3e-63
ZFIN|ZDB-GENE-081104-57	307	sdcbp "syndecan binding protei	0.464	0.801	0.466	1.4e-62
UNIPROTKB|I3LRQ4	299	SDCBP2 "Uncharacterized protei	0.505	0.896	0.459	1.4e-62
ZFIN|ZDB-GENE-030131-3727	299	sdcbp2 "syndecan binding prote	0.513	0.909	0.438	1.8e-62
MGI|MGI:2385156	292	Sdcbp2 "syndecan binding prote	0.5	0.907	0.467	1.3e-61

UNIPROTKB|Q3SZA6 SDCBP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 635 (228.6 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 128/282 (45%), Positives = 185/282 (65%)

Query:   250 ATRSTPSPIIAPSVPPTNRDTIRSALVP-LYPSLDNYMGLEVASELIXXXXXXXXXXXXX 308
             A  + P+ I++ +  P ++D     L P LYP L  YMGL +  E I             
Sbjct:    24 ANPANPA-ILSEASAPVSQD---GNLYPKLYPELSQYMGLSLNEEEIRANMALVPGAPSQ 79

Query:   309 XXXXGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAIN 368
                 G  VAR  P     M+AP++    G+++A +  GIRE++LCKD  G IGLR+ +I+
Sbjct:    80 ----GQVVAR--PSSMNHMVAPITGGDIGIRRAEIKQGIREVILCKDQDGKIGLRLKSID 133

Query:   369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
              G+FV LV+  SP+SLVGLRFGDQ+L INGE  AG++  + HK+LK A    I + IRDR
Sbjct:   134 NGIFVQLVQANSPSSLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAFGEKITMTIRDR 193

Query:   429 PLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKE 488
             P ERT+T+H+DS+GH GF F  G+I S+VKDSSAARNGLL  HNI EVNG NV+GLKD +
Sbjct:   194 PFERTITMHKDSTGHVGFVFKNGKITSIVKDSSAARNGLLTEHNICEVNGQNVIGLKDSQ 253

Query:   489 LLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
             + + +   G+++T+T++P  +++H++K+M+ +++K  MDH+I
Sbjct:   254 IADILSTAGNIVTITIMPAFIFEHIIKRMAPSIMKSLMDHTI 295

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045545 "syndecan binding" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0005895 "interleukin-5 receptor complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005137 "interleukin-5 receptor binding" evidence=IEA

GO:0005109 "frizzled binding" evidence=IEA

MGI|MGI:1337026 Sdcbp "syndecan binding protein" [Mus musculus (taxid:10090)]

 Score = 630 (226.8 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 125/257 (48%), Positives = 176/257 (68%)

Query:   275 LVP-LYPSLDNYMGLEVASELIXXXXXXXXXXXXXXXXXGNTVARQAPRDSCTMIAPLSS 333
             L P LYP L  YMGL +    I                 G  VAR  P     M+AP++ 
Sbjct:    46 LYPKLYPELSQYMGLSLNEAEICESMPMVSGAPAQ----GQLVAR--PSSVNYMVAPVTG 99

Query:   334 SGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQI 393
             + +G+++A +  GIRE++LCKD  G IGLR+ +I+ G+FV LV+  SPASLVGLRFGDQ+
Sbjct:   100 NDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQV 159

Query:   394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQI 453
             L INGE  AG++  + HK+LK A    I + IRDRP ERTVT+H+DSSGH GF F  G+I
Sbjct:   160 LQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKI 219

Query:   454 VSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
              S+VKDSSAARNGLL +H+I E+NG NV+GLKD ++ + +   G+V+T+T++PT +++H+
Sbjct:   220 TSIVKDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHI 279

Query:   514 MKKMSFNLVKDKMDHSI 530
             +K+M+ +++K  MDH+I
Sbjct:   280 IKRMAPSIMKSLMDHTI 296

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0005109 "frizzled binding" evidence=ISO

GO:0005137 "interleukin-5 receptor binding" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005895 "interleukin-5 receptor complex" evidence=IMP

GO:0007265 "Ras protein signal transduction" evidence=IPI

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019838 "growth factor binding" evidence=ISO

GO:0042043 "neurexin family protein binding" evidence=ISO

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045545 "syndecan binding" evidence=ISO

GO:0046875 "ephrin receptor binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0050839 "cell adhesion molecule binding" evidence=ISO

GO:0070062 "extracellular vesicular exosome" evidence=ISO

UNIPROTKB|O00560 SDCBP "Syntenin-1" [Homo sapiens (taxid:9606)]

 Score = 632 (227.5 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 129/282 (45%), Positives = 184/282 (65%)

Query:   250 ATRSTPSPIIAPSVPPTNRDTIRSALVP-LYPSLDNYMGLEVASELIXXXXXXXXXXXXX 308
             A  + P+ I++ +  P   D     L P LYP L  YMGL +  E I             
Sbjct:    24 ANPANPA-ILSEASAPIPHD---GNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQ 79

Query:   309 XXXXGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAIN 368
                 G  VAR  P     M+AP++ +  G+++A +  GIRE++LCKD  G IGLR+ +I+
Sbjct:    80 ----GQLVAR--PSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQDGKIGLRLKSID 133

Query:   369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
              G+FV LV+  SPASLVGLRFGDQ+L INGE  AG++  + HK+LK A    I + IRDR
Sbjct:   134 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR 193

Query:   429 PLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKE 488
             P ERT+T+H+DS+GH GF F  G+I S+VKDSSAARNGLL  HNI E+NG NV+GLKD +
Sbjct:   194 PFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQ 253

Query:   489 LLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
             + + +   G+V+T+T++P  +++H++K+M+ +++K  MDH+I
Sbjct:   254 IADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTI 295

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0019838 "growth factor binding" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0050839 "cell adhesion molecule binding" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005895 "interleukin-5 receptor complex" evidence=ISS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=NAS

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0030036 "actin cytoskeleton organization" evidence=NAS

GO:0006612 "protein targeting to membrane" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0045545 "syndecan binding" evidence=NAS;IPI

GO:0007268 "synaptic transmission" evidence=NAS

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0016020 "membrane" evidence=NAS

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=NAS

GO:0005912 "adherens junction" evidence=NAS

GO:0005137 "interleukin-5 receptor binding" evidence=ISS

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005109 "frizzled binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0046330 "positive regulation of JNK cascade" evidence=IC

RGD|621497 Sdcbp "syndecan binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 626 (225.4 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 123/257 (47%), Positives = 176/257 (68%)

Query:   275 LVP-LYPSLDNYMGLEVASELIXXXXXXXXXXXXXXXXXGNTVARQAPRDSCTMIAPLSS 333
             L P LYP L  YMGL ++   I                 G  VAR  P     M+AP++ 
Sbjct:    47 LYPKLYPELSQYMGLSLSEAEICENMPVVSGAPTQ----GQLVAR--PSSVNYMVAPVTG 100

Query:   334 SGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQI 393
             + +G+++A +  GIRE++LCKD  G IGLR+ +++ G+FV LV+  SPASLVGLRFGDQ+
Sbjct:   101 NDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQV 160

Query:   394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQI 453
             L INGE  AG++  + HK+LK A    I + IRDRP ERTVT+H+DSSGH GF F  G+I
Sbjct:   161 LQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKI 220

Query:   454 VSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
              S+VKDSSAARNGLL +H+I E+NG NV+GLKD ++ + +   G+V+T+T++P  +++H+
Sbjct:   221 TSIVKDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPAFIFEHI 280

Query:   514 MKKMSFNLVKDKMDHSI 530
             +K+M+ +++K  MDH+I
Sbjct:   281 IKRMAPSIMKSLMDHTI 297

GO:0001948 "glycoprotein binding" evidence=IPI

GO:0005109 "frizzled binding" evidence=IEA;ISO

GO:0005137 "interleukin-5 receptor binding" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005895 "interleukin-5 receptor complex" evidence=ISO;ISS

GO:0007265 "Ras protein signal transduction" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0019838 "growth factor binding" evidence=IPI

GO:0042043 "neurexin family protein binding" evidence=NAS;IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045545 "syndecan binding" evidence=ISO;IPI

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=ISO;IPI

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0070062 "extracellular vesicular exosome" evidence=ISO

UNIPROTKB|F1RT83 SDCBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 622 (224.0 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 123/257 (47%), Positives = 174/257 (67%)

Query:   275 LVP-LYPSLDNYMGLEVASELIXXXXXXXXXXXXXXXXXGNTVARQAPRDSCTMIAPLSS 333
             L P LYP L  YMGL +  E I                    VAR  P     M+AP++ 
Sbjct:    44 LYPKLYPELSQYMGLSLNEEEIRTNMAVVPGAPVQ-----GLVAR--PSSMNYMVAPVTG 96

Query:   334 SGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQI 393
             + +G+++A +  GIRE++LCKD  G IGLR+ +++ G+FV LV+  SPASLVGLRFGDQ+
Sbjct:    97 NDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQV 156

Query:   394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQI 453
             L INGE  AG++  + HK+LK A    I + IRDRP ERTVT+H+DS+GH GF F  G+I
Sbjct:   157 LQINGENCAGWSSDRAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKI 216

Query:   454 VSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
              S+VKDSSAARNGLL  H+I EVNG NV+GLKD ++ + +   G+V+T+T++P  +++H+
Sbjct:   217 TSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHI 276

Query:   514 MKKMSFNLVKDKMDHSI 530
             +K+M+ +++K  MDH+I
Sbjct:   277 IKRMAPSIMKSLMDHTI 293

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045545 "syndecan binding" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0005895 "interleukin-5 receptor complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005137 "interleukin-5 receptor binding" evidence=IEA

GO:0005109 "frizzled binding" evidence=IEA

UNIPROTKB|Q5ZHM8 SDCBP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 618 (222.6 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 127/284 (44%), Positives = 186/284 (65%)

Query:   250 ATRSTPS-P-IIAPSVPPTNRDTIRSALVP-LYPSLDNYMGLEVASELIXXXXXXXXXXX 306
             A  S P+ P I++ +  P   D     L P LYP L  YMGL +  E +           
Sbjct:    21 AFSSNPANPAILSEASAPIPHD---GGLYPRLYPELSQYMGLSLNEEEVQRNLPVAQPQ- 76

Query:   307 XXXXXXGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA 366
                   G  V+R  P +   M+AP++ +  G+++A +  GIRE +LCKD  G IGLR+ +
Sbjct:    77 ------GQLVSRP-PANY--MVAPVTGNDIGVRRAEIKQGIRETILCKDQDGKIGLRLKS 127

Query:   367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
             ++ G+FV LV+  SPASL GLRFGDQ+L INGE  AG++  + HK+LK A    I ++IR
Sbjct:   128 VDNGIFVQLVQANSPASLAGLRFGDQVLQINGENCAGWSSDKAHKVLKQASGERISMIIR 187

Query:   427 DRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKD 486
             DRP ER +T+H+DS+GH GF F  G+I S+VKDSSAARNGLL  HNI E+NG NV+GLKD
Sbjct:   188 DRPFERIITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 247

Query:   487 KELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
              ++ + +   G+V+T+T++P+S+Y++++K+M+ +++K  MDHS+
Sbjct:   248 PQIADILATAGNVVTITIMPSSIYEYIIKRMATSIMKSLMDHSV 291

GO:0005109 "frizzled binding" evidence=IEA

GO:0005137 "interleukin-5 receptor binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005895 "interleukin-5 receptor complex" evidence=IEA

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0045545 "syndecan binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

ZFIN|ZDB-GENE-081104-57 sdcbp "syndecan binding protein (syntenin)" [Danio rerio (taxid:7955)]

 Score = 609 (219.4 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 118/253 (46%), Positives = 168/253 (66%)

Query:   278 LYPSLDNYMGLEVASELIXXXXXXXXXXXXXXXXXGNTVARQAPRDSCTMIAPLSSSGSG 337
             LYP L+ +MGL ++S+ +                   +    A        AP++ S  G
Sbjct:    59 LYPELNEFMGLNLSSDALQTFSSSIADQTAGALSVCTSGMSWAA-------APITGSDLG 111

Query:   338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
             +K+A +  G+RE+VLCKD  G IGLR+ AI+ GVFV LV+  + A+L GLRFGDQIL IN
Sbjct:   112 VKRAEIRQGVREVVLCKDMDGKIGLRLKAIDNGVFVQLVQANTAAALAGLRFGDQILEIN 171

Query:   398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
             G++ AG+N    HK+LK +    I + +RDRPLERTVTLH+D +G  GF F KG+I S+V
Sbjct:   172 GKSCAGWNSDYAHKVLKNSNPERITLAVRDRPLERTVTLHKDMNGQLGFIFRKGRITSIV 231

Query:   458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
             KDSS+ARNGLL +H I E+NG N++GLKD ++++ +   G V+T+T++P  +++HMMK+M
Sbjct:   232 KDSSSARNGLLTDHQICEINGQNIIGLKDTQIMDILNSSGGVVTITVMPVVIFEHMMKRM 291

Query:   518 SFNLVKDKMDHSI 530
             S ++VK  MDHSI
Sbjct:   292 SSSIVKSLMDHSI 304

GO:0045545 "syndecan binding" evidence=IDA

UNIPROTKB|I3LRQ4 SDCBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 604 (217.7 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 130/283 (45%), Positives = 184/283 (65%)

Query:   253 STPSPIIAPSVPPTNRDT-IRSALVP-LYPSL---DNYMGLEVASELIXXXXXXXXXXXX 307
             S P P  A  +P T     ++   +P LYP+L   +NYMGL ++S+ +            
Sbjct:    24 SWPFPS-ASLLPATEEAAALQGHPLPFLYPNLAELENYMGLSLSSQEVQQNLPQIPEGAR 82

Query:   308 XXXXXGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAI 367
                     V+  +P     ++AP+S +  G+ +A +  G+RE+ LCKD  G  GLR+ AI
Sbjct:    83 AA------VSGSSPGQ---LVAPVSGNSLGVLRAEIKPGVREIHLCKDDRGKTGLRLRAI 133

Query:   368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
             ++GVFV LV+  +PASLVGLRFGDQIL I+G   AG++  + H+ +K A    I +++RD
Sbjct:   134 DKGVFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSTDKAHRAVKKASAEKIVMIVRD 193

Query:   428 RPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDK 487
             RP +RTVT+H+DS+GH GF   KG+++SLVK SSAARNGLL NH + EVNG NV+GLKDK
Sbjct:   194 RPFQRTVTMHKDSTGHVGFVIKKGKVISLVKGSSAARNGLLTNHYVCEVNGQNVIGLKDK 253

Query:   488 ELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
             E+ E +   G+V+TLT+IPT +Y+HM+KK+S  L+   MDHSI
Sbjct:   254 EVTEILATAGNVITLTIIPTVIYEHMVKKLSPTLLHHTMDHSI 296

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-030131-3727 sdcbp2 "syndecan binding protein (syntenin) 2" [Danio rerio (taxid:7955)]

 Score = 605 (218.0 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 124/283 (43%), Positives = 176/283 (62%)

Query:   249 DATRSTPSPIIAPSVP-PTNRDTIRSALVPLYPSLDNYMGLEVASELIXXXXXXXXXXXX 307
             +AT STP+       P P  +    S L P    L +YMGL + S+ +            
Sbjct:    24 NATSSTPAITQGAYQPQPATQGMPSSTLYPNLEELGDYMGLSLNSDEVQRNLALVPVATQ 83

Query:   308 XXXXXGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAI 367
                     VA   P     M+ P++ +  G+++A +  G+RE++LCKD  G +GLR+  I
Sbjct:    84 --------VA--VPSSVGGMVRPVTGADMGIRRAEIRPGLREVILCKDQEGKVGLRLRDI 133

Query:   368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
             + GVFV LV+  SPA+L GLRFGDQ+L ING+ VAG+N  + HK LKAA    I +++RD
Sbjct:   134 DNGVFVQLVQANSPAALAGLRFGDQVLQINGQNVAGWNSDKAHKALKAAAEQRIELIVRD 193

Query:   428 RPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDK 487
             RP +RT+T+H+DSSGH GF F  G+I SLVKD SAARNGLL  H I E+NG NV+GLKD 
Sbjct:   194 RPFQRTITMHKDSSGHVGFIFKSGRITSLVKDGSAARNGLLTEHYICEINGQNVIGLKDT 253

Query:   488 ELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
             ++ + +    + +T+T++P  +++HM+KKMS  L+K  MDHS+
Sbjct:   254 QIKDILTTSPTAMTITIMPKFIFEHMIKKMSGGLLKSSMDHSV 296

GO:0001666 "response to hypoxia" evidence=IDA

GO:0055113 "epiboly involved in gastrulation with mouth forming second" evidence=IGI;IMP

GO:0045545 "syndecan binding" evidence=IDA

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=IDA

MGI|MGI:2385156 Sdcbp2 "syndecan binding protein (syntenin) 2" [Mus musculus (taxid:10090)]

 Score = 597 (215.2 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 129/276 (46%), Positives = 177/276 (64%)

Query:   256 SPIIAPSVP-PTNRDTIRSALVPLYPSLDNYMGLEVASELIXXXXXXXXXXXXXXXXXGN 314
             SP + P++P P       S L P    L++YMGL ++S+ +                   
Sbjct:    24 SPTM-PTLPAPMASAPPLSELYPNLAELESYMGLSLSSQEVQKNLTQIPDSDNM------ 76

Query:   315 TVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVC 374
              V    P     ++AP+S +  G+ +A +  G+RE+ LCKD  G  GLR+ A+++G+FV 
Sbjct:    77 VVTSPGPGQ---VVAPVSGNNLGILRAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQ 133

Query:   375 LVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
             LV+  +PASLVGLRFGDQIL I+G   AG+N  + HK+LK A    I +VIRDRP +RTV
Sbjct:   134 LVQANTPASLVGLRFGDQILQIDGCDCAGWNTHKAHKVLKKASAEKIVMVIRDRPFQRTV 193

Query:   435 TLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME 494
             T+H+DSSG  GF   KG+IVS+VK SSAARNGLL NH + EVNG NV+GLKDK++ E + 
Sbjct:   194 TMHKDSSGQVGFSIKKGKIVSVVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKKVTEILT 253

Query:   495 KGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
               G V+TLT+IPT +Y+HM+K++S  L+   MDHSI
Sbjct:   254 TAGDVITLTIIPTVIYEHMIKRLSPLLLHHTMDHSI 289

GO:0005737 "cytoplasm" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	530
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	4e-19
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	3e-15
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	3e-15
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	5e-15
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	4e-12
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	7e-11
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	8e-09
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-07
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	1e-06
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	2e-06
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	4e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	2e-05
pfam13180	81	pfam13180, PDZ_2, PDZ domain	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	8e-05
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	9e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-04
TIGR00225	334	TIGR00225, prc, C-terminal peptidase (prc)	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-04
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	6e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-04
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	9e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	0.001
PLN00049	389	PLN00049, PLN00049, carboxyl-terminal processing p	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	0.003
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.004
PRK01741	332	PRK01741, PRK01741, cell division protein ZipA; Pr	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 81.5 bits (202), Expect = 4e-19
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 347 IRELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
           +R + L KD  G +G  +    +   G+FV  VE G PA   GLR GD+IL +NG +V G
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEG 60

Query: 404 YNMKQVHKILKAAPVNNIRVVIR 426
              ++  ++LK +  + + + +R
Sbjct: 61  LTHEEAVELLKNSG-DEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVG 483
            RTVTL +D  G  GF    G+       +  +     A R GL V   ILEVNG +V G
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEG 60

Query: 484 LKDKELLEAMEKGGSVLTLTLI 505
           L  +E +E ++  G  +TLT+ 
Sbjct: 61  LTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 347 IRELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
            R + L K   GL G  +    +   GV V  V  GSPA+  GLR GD IL +NG +V G
Sbjct: 2   PRLVELEKGGGGL-GFSLVGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEG 60

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRP 429
               +   +LK A    + + +    
Sbjct: 61  LTHLEAVDLLKKAG-GKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
              GV V  VE GSPA   GL+ GD IL++NG  V    ++ V ++LK      + + +R
Sbjct: 11  TEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTVR 70

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVG 483
            R V L +   G  GF    G+       + S+V  S AA+ GL V   ILEVNG +V G
Sbjct: 2   PRLVELEKGGGG-LGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEG 60

Query: 484 LKDKELLEAMEKGGSVLTLTLIP 506
           L   E ++ ++K G  +TLT++ 
Sbjct: 61  LTHLEAVDLLKKAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
           G IGL +   + G+ +  V  GSPA+  G++ GD I++I+GE V G +++ V K+L+   
Sbjct: 2   GGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKA 61

Query: 418 VNNIRV-VIRDRPLERTVTLHRDS 440
              +R+ + R     R VTL R  
Sbjct: 62  GTKVRLTLKRGDGEPREVTLTRLK 85

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNN-IRVVIR 426
            +GV V  V+ GSPA+  GL+ GD IL++NG+ V   ++  + + L      + + + + 
Sbjct: 23  TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVL 80

Query: 427 DRPLERTVTL 436
               E TVT+
Sbjct: 81  RGGKELTVTV 90

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 349 ELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGY- 404
           E+ L K   G +G  +      + G+FV  V  G  A   GL+ GD+ILSING+ +    
Sbjct: 1   EVTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGGLQEGDRILSINGQDLENLS 60

Query: 405 NMKQVHKILKAAPVNNIRVVIR 426
           + + V  +        + + I 
Sbjct: 61  HDEAVLALKG--SGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 57/253 (22%), Positives = 78/253 (30%), Gaps = 28/253 (11%)

Query: 36   PPPPVYQTSSHTSPNAYNNPPSPY------------HSANPPPYYQHPSVPSHPSVPTFP 83
            PPPP+   +   +P+    PP P                + PP    P  P        P
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD--P 2608

Query: 84   SAPIYPSAPPQESHS---PYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYP---S 137
              P  PS  P ++H+   P       AN P    P    P      +P   + S P    
Sbjct: 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRAR 2668

Query: 138  VPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSV 197
               +    ++ P  P +  A      LTS         P P  P  +        P    
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPP----PPPPTPEPAPHALVSATPLPPG 2724

Query: 198  QPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPS-VPPAIHDAT--RST 254
              +   A P  P  P+  A  P+ P      A  +  PTTA  P+  PPA   A   R  
Sbjct: 2725 PAAARQASPALPAAPAPPAV-PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRL 2783

Query: 255  PSPIIAPSVPPTN 267
              P +A       
Sbjct: 2784 TRPAVASLSESRE 2796

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 57/247 (23%), Positives = 79/247 (31%), Gaps = 17/247 (6%)

Query: 36   PPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVP---TFPSAPIYPSAP 92
            P PP        SP A    P P  +  PP   +    P   S P            S+P
Sbjct: 2624 PDPP----PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP 2679

Query: 93   PQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMP 152
            PQ          + +       P P       P     A    P      QA    P+ P
Sbjct: 2680 PQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

Query: 153  NQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQ--PPAYSVQPSHNTAYPTAPL 210
                 P G  P T    A  A  P    P A   P+AP   PP    +P+  +   +   
Sbjct: 2740 APPAVPAG--PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797

Query: 211  VPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDT 270
            +PS     P+ PPA +     +  P  + A  +PP     T + P+    P  PP     
Sbjct: 2798 LPS--PWDPADPPAAVLAPAAALPPAASPAGPLPP----PTSAQPTAPPPPPGPPPPSLP 2851

Query: 271  IRSALVP 277
            +  ++ P
Sbjct: 2852 LGGSVAP 2858

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 49/264 (18%), Positives = 67/264 (25%), Gaps = 29/264 (10%)

Query: 19  AQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSA-NPPPYYQHPSVPSHP 77
                 S  +  +S  SP    Y+ S+      Y     P  S     P  +     +  
Sbjct: 85  PSVGPDSDLSQKTSTFSPCQSGYEASTDPE---YIPDLQPDPSLWGTAPKPEPQPPQAPE 141

Query: 78  SVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPS 137
           S P  P  P       +E  +          +P    P    PQG  P      Q   P 
Sbjct: 142 SQP-QPQTPAQKMLSLEEVEAQLQQRQQAPQLPQP--PQQVLPQGMPPRQAAFPQQGPPE 198

Query: 138 VP-NQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYS 196
            P   PQ P  +P      Q              + A  P P        P  P P    
Sbjct: 199 QPPGYPQPPQGHPEQVQPQQFLPA-------PSQAPAQPPLPPQL-----PQQPPPLQQP 246

Query: 197 VQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPS 256
             P  +   P  P  P      P  P A          P     P+  P +     +   
Sbjct: 247 QFPGLSQQMPPPPPQPPQQQQQPPQPQA---------QPPPQNQPTPHPGLPQGQNAPLP 297

Query: 257 PIIAPSVPPTNRDTIRSALVPLYP 280
           P   P + P  +        P + 
Sbjct: 298 PPQQPQLLPLVQQPQGQQRGPQFR 321

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 50/275 (18%), Positives = 81/275 (29%), Gaps = 35/275 (12%)

Query: 29   TSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSV-----PTFP 83
             +     PP          SP+   N P P+     PP  +    P+   V         
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 84   SAPIYPSAPPQ------------------ESHSPYYYSDIRANVPTGGSPVPSYPQGSYP 125
                  S+PPQ                  +   P    +   +     +P+P  P  +  
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 126  SNPYQ----AQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINP 181
            ++P      A  + P+ P  P  P      P     P    P   +    +      +  
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

Query: 182  LASNKPSAPQPPAYSVQP--------SHNTAYPTAPLVPSTIATAPSAPPANIEDATRST 233
            L+ ++ S P P   +  P        +   A   A  +P   +  P+APP        S 
Sbjct: 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL 2850

Query: 234  HPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNR 268
                + AP         +RS  +   AP+ PP  R
Sbjct: 2851 PLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 55/238 (23%), Positives = 86/238 (36%), Gaps = 23/238 (9%)

Query: 29   TSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIY 88
            TS +   PPPP  + + H   +A   PP P  +    P    P+ P+ P+VP  P+ P  
Sbjct: 2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP--ALPAAPAPPAVPAGPATPGG 2753

Query: 89   PSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTY 148
            P+ P +                T G P P+ P    P+     + + P+V +  ++  + 
Sbjct: 2754 PARPARPP-------------TTAGPPAPAPPAA--PAAGPPRRLTRPAVASLSESRESL 2798

Query: 149  PSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTA 208
            PS  +    P       ++   + +    P+ P  S +P+AP PP     PS       A
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Query: 209  PLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPT 266
            P           +P A          P         PA+  +T S   P   P  PP 
Sbjct: 2858 PGGDVRRRPPSRSPAAK---PAAPARPPVRRLAR--PAVSRSTESFALPPDQPERPPQ 2910

Length = 3151

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 433 TVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLLVNHNILEVNGANVVGLK 485
            VTL +   G  GF        + G  VS ++   +A   GL     IL +NG ++  L 
Sbjct: 1   EVTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGGLQEGDRILSINGQDLENLS 60

Query: 486 DKELLEAMEKGGSVLTLTLI 505
             E + A++  G  +TLT++
Sbjct: 61  HDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 37/215 (17%), Positives = 53/215 (24%), Gaps = 10/215 (4%)

Query: 30  SSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYP 89
           ++    PP P    +S   P     P +P   A  P         + P+  +   AP   
Sbjct: 594 AAGGEGPPAP----ASSGPPEEAARPAAPAAPA-APAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 90  SAPPQESH--SPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNT 147
           +      H   P             G   P+ P  +       A          P    T
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

Query: 148 YPSMPNQLQAPNGFYP-LTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYP 206
            P+      A         +S  +  A  P P+ P   + P     PA    P       
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768

Query: 207 TAPLVPSTIATAPSAPPANIEDATRSTHPTTATAP 241
                P    + PS      ED   S         
Sbjct: 769 APAAAPP--PSPPSEEEEMAEDDAPSMDDEDRRDA 801

Length = 824

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 18/115 (15%), Positives = 23/115 (20%), Gaps = 14/115 (12%)

Query: 110 PTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQ 169
                     P G     P  +    P  P  P  PN    M                Q+
Sbjct: 403 QGPQQQFNGQPLG----WPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAA--QK 456

Query: 170 ASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPA 224
                + YP        P+    P     P   +                SA P 
Sbjct: 457 PPMQPVMYP--------PNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQ 503

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAM-EKGGSVLTLTLI 505
           ++S+   S A R GL     IL VNG +V  L  +++ E + ++ G  +TLT+ 
Sbjct: 17  VLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTVR 70

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 53/257 (20%), Positives = 75/257 (29%), Gaps = 10/257 (3%)

Query: 29   TSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIY 88
              S+   PP P     +  +  A   PP+       P     P+ P   + P  P+ P  
Sbjct: 2715 LVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774

Query: 89   PSAPPQESHSPYYYSDIRANVPTGGSP-----VPSYPQGSYPSNPYQAQNSYPSVP---N 140
            P+A P    +    + +  +  +  SP      P+       + P  A  + P  P    
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834

Query: 141  QPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPS 200
            QP AP   P  P       G        +    S      P A  +P   +    +V  S
Sbjct: 2835 QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRS 2894

Query: 201  HNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIA 260
               ++   P  P      P APP           P     P  PP        T  P  A
Sbjct: 2895 -TESFALPPDQPERPPQ-PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGA 2952

Query: 261  PSVPPTNRDTIRSALVP 277
                         ALVP
Sbjct: 2953 GEPSGAVPQPWLGALVP 2969

Length = 3151

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR--DRPLERT 433
           V  GSPA+  GL+ GD+IL+ING+ +   + + +   ++  P   + + +      +  T
Sbjct: 19  VVPGSPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGETITLT 76

Query: 434 VT 435
           +T
Sbjct: 77  LT 78

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 360 IGLRVCAINEG-VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV 418
           IG+ +   + G V V     GSPA+  G++ GD I+ I+G++V G ++ +  K+++  P 
Sbjct: 102 IGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPG 161

Query: 419 NNIRVVIR----DRPLERTVTLHRD 439
             + + I      +P   TVTL R+
Sbjct: 162 TKVTLTILRAGGGKPF--TVTLTRE 184

Length = 406

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 49/232 (21%), Positives = 71/232 (30%), Gaps = 15/232 (6%)

Query: 25   SKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPS 84
            S   +  S  SP  P    ++  +P A   P +      PPP    P+ P  P  P  PS
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

Query: 85   APIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQA 144
             P+  S  P          D+R   P+         + + P+ P   + + P+V    ++
Sbjct: 2850 LPLGGSVAPG--------GDVRRRPPSRSPA----AKPAAPARPPVRRLARPAVSRSTES 2897

Query: 145  PNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTA 204
                P  P +   P    P     Q      P P  P     P    P A +  P+    
Sbjct: 2898 FALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP---PPPRPQPPLAPTTDPAGAGE 2954

Query: 205  YPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPS 256
               A   P   A  P           +      A A S PP    +     S
Sbjct: 2955 PSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 52/275 (18%), Positives = 84/275 (30%), Gaps = 48/275 (17%)

Query: 34   SSPPPPVYQTSSHTSPNAYNNPPSPYHSANPP----------PYYQHPSVPSHPSVPTFP 83
            + PP  + + +  +   +  + PSP+  A+PP          P    P+ P  P     P
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

Query: 84   SAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQ 143
            +AP  P  PP  S            +P GGS  P       P  P ++  + P+ P +P 
Sbjct: 2837 TAPPPPPGPPPPS------------LPLGGSVAPGGDVRRRP--PSRSPAAKPAAPARPP 2882

Query: 144  A-----PNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQ 198
                  P    S  +    P+        Q            P    +P  P PP     
Sbjct: 2883 VRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR---- 2938

Query: 199  PSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPI 258
                   P  PL P+T       P   +        P       VP  +       P P 
Sbjct: 2939 -------PQPPLAPTTDPAGAGEPSGAV--------PQPWLGALVPGRVAVPRFRVPQPA 2983

Query: 259  IAPSVPPTNRDTIRSALVPLYPSLDNYMGLEVASE 293
             +   P ++   +    +    S  + + L   ++
Sbjct: 2984 PSREAPASSTPPLTGHSLSRVSSWASSLALHEETD 3018

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 51/244 (20%), Positives = 73/244 (29%), Gaps = 24/244 (9%)

Query: 36   PPPPVYQTSSHT-SPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQ 94
            P  PVY+  +    P A    P P     P P          P  P+  +  I P  P  
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDP--------DAPPAPSRLAPAILPDEPVG 2526

Query: 95   ESHSPYYYSDIR-----ANVPTGGSP-------VPSYPQGSYPSNPYQAQNSYPSVPNQP 142
            E   P   + IR     A+   G  P        P+ P  S P      + S P+V ++ 
Sbjct: 2527 EPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRA 2586

Query: 143  QAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHN 202
            + P+  P    + +AP         +  +  S   P        P +P P A    P   
Sbjct: 2587 RRPDA-PPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP 2643

Query: 203  TAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPS 262
               P         A    + P       R+   ++        A      S  S    P 
Sbjct: 2644 PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP 2703

Query: 263  VPPT 266
             PPT
Sbjct: 2704 PPPT 2707

Length = 3151

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 43/163 (26%), Positives = 60/163 (36%), Gaps = 34/163 (20%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETV----AGYNMKQVHKILKAAPVNNIRV 423
             G  V  V  GSPA   GL+ GD I S+NG+ +             K  K   +     
Sbjct: 256 QRGALVAQVLPGSPAEKAGLKAGDVITSVNGKPISSFADLRRAIGTLKPGKKVTLG---- 311

Query: 424 VIRD-RPLERTVTLHRD-------SSGHFGFHF------------NKGQ-----IVSLVK 458
           ++R  +    TVTL          S+   G                KG      +  +V 
Sbjct: 312 ILRKGKEKTITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVS 371

Query: 459 DSSAARNGLLVNHNILEVNGANVVGLKD-KELLEAMEKGGSVL 500
            S AAR GL     IL VN   V  + + +++L   +KGG V 
Sbjct: 372 GSPAARAGLQPGDVILSVNQQPVSSVAELRKVLARAKKGGRVA 414

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 358 GLIGLRVCAI-NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQ-VHKILKA 415
           G IG+RV      GV V  V+ GSPA+  GL+ GD ILSI+G+ V   ++ + +  IL  
Sbjct: 1   GDIGVRVVQNEGTGVTVVSVKEGSPAAKAGLKPGDIILSIDGKKVN--SLTELIEVILNG 58

Query: 416 APVNNIRV-VIRD-RPLERTVTL 436
            P + +++ V RD +     V L
Sbjct: 59  KPGDTVKLTVYRDGKKKTVEVKL 81

Length = 81

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 49/245 (20%), Positives = 74/245 (30%), Gaps = 48/245 (19%)

Query: 39  PVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHS 98
           PV     + +P A      PY++  P    Q P     P  P   +A          +  
Sbjct: 400 PVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ 459

Query: 99  PYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSY---PSVPNQPQAPNTYPSMPNQL 155
             Y                +Y Q +     YQ        P V  +P    T P+ P   
Sbjct: 460 STY------------QTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARP--- 504

Query: 156 QAPNGFYPLTSSQQASQAS--------LPYPINPLASNKPSAPQPPAYSVQPSHNTAYPT 207
             P  ++     ++A +          +P P+      K S   P   +V P        
Sbjct: 505 --PLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPP-------- 554

Query: 208 APLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPI----IAPSV 263
              V +  A +P A  + ++ AT +   T A A    P    A    P P     I P +
Sbjct: 555 ---VEAAAAVSPLA--SGVKKATLA---TGAAATVAAPVFSLANSGGPRPQVKEGIGPQL 606

Query: 264 PPTNR 268
           P   R
Sbjct: 607 PRPKR 611

Length = 1355

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 36/172 (20%), Positives = 53/172 (30%), Gaps = 20/172 (11%)

Query: 132 QNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQ 191
             +  +     +     P       AP          QA+ A  P      A++ P+AP 
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAP--------VAQAAAAPAPAAAPAAAASAPAAPP 418

Query: 192 PPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDAT 251
             A     +   A   A    +  A    AP    + A  +       AP   PA+  A 
Sbjct: 419 AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP--EPAVASAA 476

Query: 252 RSTPSPIIAPSVPPTNRDTIRSALVPLYPSLDNYMGLEVASELINAYARENA 303
            +  +   A  + PT    +  A V              A+E I A ARE A
Sbjct: 477 PAPAAAPAAARLTPTEEGDVWHATVQQL----------AAAEAITALARELA 518

Length = 618

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.5 bits (107), Expect = 8e-05
 Identities = 44/245 (17%), Positives = 69/245 (28%), Gaps = 25/245 (10%)

Query: 28  TTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPI 87
           T + S+++P  PV QT    S +     P+      P P    P +   P    +P    
Sbjct: 328 TATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPE--GYPQQSQ 385

Query: 88  YPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNT 147
           Y  A P   ++      ++   P          Q  Y +   +     P     P+ P  
Sbjct: 386 Y--AQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP-- 441

Query: 148 YPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPT 207
                 Q +     +   S+ Q  Q     P       +   P      V+P        
Sbjct: 442 VAGNAWQAEEQQSTFAPQSTYQTEQT-YQQPAAQEPLYQQPQPVEQQPVVEP-------- 492

Query: 208 APLVPSTIATAPSAPPANI-----EDATRSTHPTTATAPSVPPAIHDATRSTPS--PIIA 260
               P    T P+ PP        E   R      A    +P  + +      S      
Sbjct: 493 ---EPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSV 549

Query: 261 PSVPP 265
            +VPP
Sbjct: 550 AAVPP 554

Length = 1355

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAM-EKGGSVLTLTLIP 506
           +VS +  S AA+ G+     I++++G +V G+   E ++ +  K G+ +TLT++ 
Sbjct: 116 VVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILR 170

Length = 406

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 20/118 (16%), Positives = 27/118 (22%), Gaps = 6/118 (5%)

Query: 77  PSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYP 136
             V T  S   +P      +      S       + G P    P     S    +    P
Sbjct: 161 ADVATTNSDNSFPGEDADPAS----ASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAP 216

Query: 137 SVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPA 194
           S       P +  S  N    P G              L     P   +  + P P  
Sbjct: 217 SSFQSDTPPPSPESPTNP-SPPPGPAAPPPPPVQQVPPLSTA-KPTPPSASATPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 29/190 (15%), Positives = 51/190 (26%), Gaps = 2/190 (1%)

Query: 90  SAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYP 149
           + P   + +P       A  P   +P P+ P  +  + P  A  +        +      
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 150 SMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAP 209
           ++    QA         +   + A+ P      A+  P      A +       A   AP
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491

Query: 210 --LVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTN 267
               P      P    +       +            PA  D   +  +   AP+  P  
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAP 551

Query: 268 RDTIRSALVP 277
           R    +  V 
Sbjct: 552 RAAAATEPVV 561

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 11/110 (10%)

Query: 21  NEYFSKQTTSSSFSSPPPPVYQTS--SHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPS 78
           N +  +    +S S   PP       S  SP    + PS       P  +Q  + P  P 
Sbjct: 170 NSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPE 229

Query: 79  VPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNP 128
            PT PS P  P+APP                    +  P+ P  S    P
Sbjct: 230 SPTNPSPPPGPAAPPPPPVQQVPPL---------STAKPTPPSASATPAP 270

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 33/194 (17%), Positives = 51/194 (26%), Gaps = 3/194 (1%)

Query: 137 SVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYS 196
                  AP   P+      A     P       + A          +  P+   P   +
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 197 VQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPS 256
           +  +   +       P+      +AP A    A     P  A A + P     A    P+
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 257 PIIAPSVPPTNRDTIRSALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTV 316
                  PP        A            G    S    A A  + A E  + A     
Sbjct: 493 D---DDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549

Query: 317 ARQAPRDSCTMIAP 330
           A +A   +  ++AP
Sbjct: 550 APRAAAATEPVVAP 563

Length = 700

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 61/245 (24%), Positives = 80/245 (32%), Gaps = 23/245 (9%)

Query: 38  PPVYQTSSHTSPNAYNNPPSPYHSANPPPY-YQHPSVPSHPSVPTFPSAP-IYPSAPPQE 95
           P    T+S  + +A    PS   +  P P+  Q P  P+  S     SAP  +P      
Sbjct: 576 PLTSPTTSQLASSA----PSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPI 631

Query: 96  SHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQL 155
              P     I  NV     P P  P     +           +P QP        +P Q 
Sbjct: 632 PMRPLRMQPITFNVL--VFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQ- 688

Query: 156 QAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTI 215
            AP    P            P P+ P A+  P   Q PA +   +   A       P   
Sbjct: 689 WAPGTMQP--------PPRAPTPMRPPAA-PPGRAQRPAAATGRARPPAAAPGRARPPAA 739

Query: 216 ATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSAL 275
           A   + PPA      R+  P  A   + PPA   A    P+P   P  PP  +   R A 
Sbjct: 740 APGRARPPAAA--PGRARPPAAAPGRARPPA---AAPGAPTPQPPPQAPPAPQQRPRGAP 794

Query: 276 VPLYP 280
            P  P
Sbjct: 795 TPQPP 799

Length = 991

>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc)

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 39/80 (48%)

Query: 360 IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN 419
           IG++V   +  + +     GSPA   G++ GD+I+ ING++VAG ++     +++     
Sbjct: 53  IGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGT 112

Query: 420 NIRVVIRDRPLERTVTLHRD 439
            + + I      + +T    
Sbjct: 113 KVSLEILRAGKSKPLTFTLK 132

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]. Length = 334

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (103), Expect = 3e-04
 Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 9/164 (5%)

Query: 110 PTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPL-TSSQ 168
           P    P P  P  S          + P+    P      P  P          PL  ++ 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 169 QASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIED 228
           Q   A          + K    +P A S     N+A      V    +    AP      
Sbjct: 421 QLLAARQQLQ-RAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479

Query: 229 ATRSTHPTTATAPSV--PPAI-----HDATRSTPSPIIAPSVPP 265
             ++T+P       V  P A+     H+ T    + + A ++  
Sbjct: 480 RWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIER 523

Length = 647

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 30/175 (17%), Positives = 36/175 (20%), Gaps = 22/175 (12%)

Query: 35  SPPPPVYQTSSHTSPNAYNNPPS--PYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAP 92
             P  +    +          P   P      P   Q       P     P+ P  P   
Sbjct: 179 VLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAP--SQAPAQPPLPPQL 236

Query: 93  PQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAP--NTYPS 150
           PQ               P      P   Q   P  P   Q        Q Q P  N    
Sbjct: 237 PQ------------QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTP 284

Query: 151 MPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAY 205
            P   Q  N   P     Q     LP    P    +    +     +      A 
Sbjct: 285 HPGLPQGQNAPLPPPQQPQ----LLPLVQQPQGQQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 27/139 (19%), Positives = 38/139 (27%), Gaps = 20/139 (14%)

Query: 104 DIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYP 163
           D         +  P        ++P    +S P VP+ P  P    S P+    P     
Sbjct: 160 DADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS-PSDSSLP----- 213

Query: 164 LTSSQQASQASLPYPINPLASNKPSAP-QPPAYSVQPSHNTAYPTAP-LVPSTIATAPSA 221
                       P P +  +   P +P  P   S  P      P     VP      P+ 
Sbjct: 214 ------------PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTP 261

Query: 222 PPANIEDATRSTHPTTATA 240
           P A+   A          A
Sbjct: 262 PSASATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 41/202 (20%), Positives = 53/202 (26%), Gaps = 22/202 (10%)

Query: 28  TTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPI 87
           T   S   P PP       + P        PY       Y    +    P +P     P 
Sbjct: 87  TVDPSAGEPAPPPPHARRTSEPELPRPGRRPY-----EGYGGPRADDRPPGLPRQDQLPT 141

Query: 88  YPSAPPQESHSP-----------YYYSDIRANVPTG---GSPVPSYPQGSYPSNPYQAQN 133
              A P     P           Y +   R   P      SP    P+      PY A  
Sbjct: 142 ARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGR 201

Query: 134 S-YPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQ--QASQASLPYPINPLASNKPSAP 190
             Y         P      P + +      P  +    +           P+   +PSAP
Sbjct: 202 PEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAP 261

Query: 191 QPPAYSVQPSHNTAYPTAPLVP 212
            P A    P+     PTA L P
Sbjct: 262 GPLAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 444 FGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAM-EKGGSVLTL 502
             +      I S++  S AA+ G+     I+ ++G  V GL  +++++ +  K G+ + L
Sbjct: 8   LKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRL 67

Query: 503 TLIP 506
           TL  
Sbjct: 68  TLKR 71

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 178 PINPLASNKPSAPQPPAY---SVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTH 234
            I P+ +   +APQP A    S  PS ++A        S    A + P  +  D   +  
Sbjct: 378 HIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS-VDPPAAVP 436

Query: 235 --PTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNR 268
             P +    +V PA     +  P   ++   P T R
Sbjct: 437 VNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLR 472

Length = 614

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 41.5 bits (97), Expect = 9e-04
 Identities = 54/215 (25%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 55  PPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYY-YSDIRANVPTGG 113
           P     +  P P    P  P  PS P     P  P A      SPY  Y D++   PT  
Sbjct: 330 PKESDAADGPKPVPTKPVTPEAPSPPI-EEEPPQPKAVVPRPLSPYTAYEDLKP--PT-- 384

Query: 114 SPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQA 173
           SP+P+ P  S  S+      + P+ P+   +P +  ++P    A              +A
Sbjct: 385 SPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQ------------VEA 432

Query: 174 SLPYPINPLAS----NKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDA 229
               P++P A       P++P P A +      ++  + P VP T      AP     DA
Sbjct: 433 KKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDT------APATAATDA 486

Query: 230 TRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVP 264
                P     P  P A++D  +   SP  A  V 
Sbjct: 487 A--APPPANMRPLSPYAVYDDLKPPTSPSPAAPVG 519

Length = 576

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 23/127 (18%), Positives = 33/127 (25%)

Query: 49  PNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRAN 108
           PN           A+        S P   + P   S    PS+ P     P    D  + 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 109 VPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQ 168
             +   P PS  Q   P    ++  +    P     P         L       P  S+ 
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 169 QASQASL 175
            A    +
Sbjct: 268 PAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 39/231 (16%), Positives = 55/231 (23%), Gaps = 20/231 (8%)

Query: 34  SSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPP 93
           + P        +  +P A     +    A PP     P+     +      A       P
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPA---APAAAPAAAAAARAVAAAPARRSP 428

Query: 94  QESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPN 153
                               +P P+       +    A    P       AP        
Sbjct: 429 APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 154 QLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPS 213
              A +   P         +  P   +        AP        P   TA P       
Sbjct: 489 PAPADDDPPPWEELPPEFASPAPAQPDA-------APAGWVAESIPDPATADPDDAF--E 539

Query: 214 TIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVP 264
           T+A AP+A PA             AT P V P    A+ S    +     P
Sbjct: 540 TLAPAPAAAPA--------PRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 43/254 (16%), Positives = 70/254 (27%), Gaps = 10/254 (3%)

Query: 28  TTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPI 87
           T+ +   + P     T+  TS       P+P            P+  +     T P    
Sbjct: 500 TSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTE 559

Query: 88  YPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNT 147
                   +        +  +  T G         S       + +S P   +    P  
Sbjct: 560 ESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLL 619

Query: 148 YPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLAS------NKPSAPQPPAYSVQ--- 198
             + P   +      P   S        P P     S      N  ++  P    V    
Sbjct: 620 TSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGM 679

Query: 199 PSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPI 258
           P+ N   P+AP    T     ++        T+ T  +T  A + P     A R+TP   
Sbjct: 680 PNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNA 739

Query: 259 IAPSVPPTNRDTIR 272
                PP+    +R
Sbjct: 740 TTYL-PPSTSSKLR 752

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 379 GSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR 438
           G PA+  G+R GD IL+I+G +  G ++ +    L+    +++ + +R  P  R VTL R
Sbjct: 112 GGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTR 171

Query: 439 DS 440
           + 
Sbjct: 172 EK 173

Length = 389

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 57/245 (23%), Positives = 85/245 (34%), Gaps = 21/245 (8%)

Query: 39  PVYQTSSHTSPNAYNNP-PSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESH 97
           P     S   P+++  P  S      PP     P  PS P +   P+ PI         H
Sbjct: 305 PPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKH 364

Query: 98  -----SPYYYSDIRANVPTGGS--PVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPS 150
                 P  +  + +N+P   +  P+ S P    PS         P    Q Q   + P+
Sbjct: 365 PPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMP----QSQPLQSVPA 420

Query: 151 MPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPL 210
            P  L       P  S+   S      P +P A +  ++   PA    PS  T+ P AP 
Sbjct: 421 QPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAP- 479

Query: 211 VPSTIATAPSAPPANIEDATRSTHPTTATAPSV-----PPAIHDATRSTPSPIIAPSVPP 265
                A++ S PP +   ++          P +     P    +   S P P  +PS  P
Sbjct: 480 ---PRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEP 536

Query: 266 TNRDT 270
           T  +T
Sbjct: 537 TVVNT 541

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 35/136 (25%), Positives = 45/136 (33%), Gaps = 8/136 (5%)

Query: 57  SPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPV 116
            P     P   YQ P  P  P        P  P AP  +   P      +        PV
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAP--QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811

Query: 117 PSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLP 176
              PQ   P  P   Q  Y   P QP AP    ++ + L   NG      S+   + + P
Sbjct: 812 APQPQYQQPQQPVAPQPQYQQ-PQQPVAPQPQDTLLHPLLMRNG-----DSRPLHKPTTP 865

Query: 177 YPINPLASNKPSAPQP 192
            P   L +  PS  +P
Sbjct: 866 LPSLDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT 435
           V   S A+L GLR GD+I++++GE VA ++  +   +  A  V N+  ++  R       
Sbjct: 136 VAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIRL--DGEA 193

Query: 436 LHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNH--NILEVNGANVVGLKD-KELLEA 492
               +            I     D   A +   +    N     G  +V     + +  A
Sbjct: 194 HAVAAEIIKSLGLTPVVIPLKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGLA 253

Query: 493 MEKGGSVLTLTLIPTSMYQHMMKKMSFNLV 522
           +EK G ++ LTL    + + +   +S   +
Sbjct: 254 VEKTGRLVKLTL--KMLKKLITGDLSLKNL 281

Length = 375

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 47/225 (20%), Positives = 63/225 (28%), Gaps = 13/225 (5%)

Query: 20  QNEYFSKQTTSSSFSSP-PPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPS 78
            NE  S  +       P  PP  Q     +      PP+P   A PP      + P+   
Sbjct: 159 DNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQP 218

Query: 79  VPTFPSAPIY-PSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPS 137
               P + I  PS  PQ   SP+    ++    +  SP P  P   +P + +        
Sbjct: 219 QQPSPLSLISAPSLHPQRLPSPH--PPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMP 276

Query: 138 VPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSV 197
              Q           N  Q            Q+    LP P      +     Q      
Sbjct: 277 HALQQGPVFLQHPSSNPPQP-------FGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQ 329

Query: 198 QPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPS 242
           QP      P AP +P      P   P          HP     PS
Sbjct: 330 QPPREQPLPPAPSMPHI--KPPPTTPIPQLPNQSHKHPPHLQGPS 372

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 20/188 (10%)

Query: 23  YFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTF 82
           YFS    +++F+   PP    S+  +       P  Y    PPP+ Q  +  S       
Sbjct: 33  YFSN---ANTFTRTRPPSRPISNEEADQPNTLNPQSYVETTPPPFQQPQTEESESE---- 85

Query: 83  PSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQP 142
               +      ++S       +I+  +P            S P  P Q Q   P+  N  
Sbjct: 86  --NEVQIQQEVEQS-----VDEIKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVA 138

Query: 143 QAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQP-SH 201
                    PN          + SS +  +  L      + S+     +     ++P + 
Sbjct: 139 SMTIEETQSPNV-----PIEGINSSSEQLRVELAELAAEIYSDASHRVELAKNFMEPQAE 193

Query: 202 NTAYPTAP 209
             A P A 
Sbjct: 194 TEAQPEAT 201

Length = 332

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 26/155 (16%), Positives = 45/155 (29%), Gaps = 6/155 (3%)

Query: 112 GGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQAS 171
                 +   G+       A          P+A     +   + +AP       ++    
Sbjct: 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKA--AAAAAATRAEAPPAAPAPPATADRG 439

Query: 172 QASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATR 231
             +        A     A    +   +     A P A    ++   + + P A  E A R
Sbjct: 440 DDAADGD----APVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPR 495

Query: 232 STHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPT 266
           +  P+ AT  +VP A   A  S      A + P  
Sbjct: 496 AAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530

Length = 830

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
PRK10139	455	serine endoprotease; Provisional	99.91
PRK10942	473	serine endoprotease; Provisional	99.89
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.88
KOG3209|consensus	984		99.75
KOG3605|consensus	829		99.7
KOG3209|consensus	984		99.7
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.58
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.46
PRK10898	353	serine endoprotease; Provisional	99.41
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	99.36
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.31
KOG3580|consensus	1027		99.27
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.24
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	99.19
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.18
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.09
KOG3580|consensus	1027		99.04
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	99.03
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.02
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.0
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.96
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.93
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.86
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.85
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.7
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.69
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.69
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.68
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.65
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.62
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.55
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.46
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.46
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.42
KOG3549|consensus	505		98.42
PRK11186	667	carboxy-terminal protease; Provisional	98.41
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.37
KOG3834|consensus	462		98.36
COG3975	558	Predicted protease with the C-terminal PDZ domain	98.36
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	98.33
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	98.32
KOG3550|consensus	207		98.3
KOG3550|consensus	207		98.28
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.27
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.26
KOG3551|consensus	506		98.22
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.21
KOG3553|consensus	124		98.17
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	98.15
PRK10942	473	serine endoprotease; Provisional	98.08
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.08
PRK10139	455	serine endoprotease; Provisional	98.06
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.05
KOG3549|consensus	505		98.03
KOG3551|consensus	506		98.01
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.94
KOG1421|consensus	955		97.93
KOG0609|consensus	542		97.92
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.9
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.88
KOG1320|consensus	473		97.88
KOG3651|consensus	429		97.83
KOG3606|consensus	358		97.8
PRK10898	353	serine endoprotease; Provisional	97.78
KOG1892|consensus	1629		97.75
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.62
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.62
KOG1892|consensus	1629		97.62
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.59
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.56
KOG3651|consensus	429		97.45
KOG3571|consensus	626		97.42
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.42
KOG1421|consensus	955		97.41
KOG3552|consensus	1298		97.39
KOG3938|consensus	334		97.37
KOG3129|consensus	231		97.36
KOG3542|consensus	1283		97.33
KOG1320|consensus	473		97.28
KOG3553|consensus	124		97.25
KOG3542|consensus	1283		97.05
KOG3552|consensus	1298		96.91
KOG3606|consensus	358		96.9
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	96.88
KOG0609|consensus	542		96.86
PRK09681	276	putative type II secretion protein GspC; Provision	96.86
KOG3938|consensus	334		96.81
PRK11186	667	carboxy-terminal protease; Provisional	96.79
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.76
KOG3571|consensus	626		96.76
KOG4407|consensus	1973		96.74
KOG4371|consensus	1332		96.71
KOG3605|consensus	829		96.68
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.32
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	96.31
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.12
KOG0606|consensus	1205		95.95
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	95.83
KOG0606|consensus	1205		95.82
COG3031	275	PulC Type II secretory pathway, component PulC [In	95.42
KOG3532|consensus	1051		95.3
KOG3834|consensus	462		94.31
PRK09681	276	putative type II secretion protein GspC; Provision	94.0
COG0750	375	Predicted membrane-associated Zn-dependent proteas	93.77
KOG3129|consensus	231		93.7
COG3975	558	Predicted protease with the C-terminal PDZ domain	93.56
COG3031	275	PulC Type II secretory pathway, component PulC [In	93.29
KOG3532|consensus	1051		92.95
PF12812	78	PDZ_1: PDZ-like domain	89.95
PF12812	78	PDZ_1: PDZ-like domain	89.59
KOG1738|consensus	638		88.9
KOG1738|consensus	638		86.96
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	82.52
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	80.46

>PRK10139 serine endoprotease; Provisional

Probab=99.91  E-value=1e-23  Score=225.91  Aligned_cols=211  Identities=22%  Similarity=0.295  Sum_probs=171.6

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA  366 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~  366 (530)
                      ++.||    +|+++++||+++++++..|+..+++..+..-+|+..|++||++.+.++.+..     ++..++|||+.+..
T Consensus       200 ~~~iq----tda~in~GnSGGpl~n~~G~vIGi~~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~~g~v~r~~LGv~~~~  275 (455)
T PRK10139        200 ENFIQ----TDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTE  275 (455)
T ss_pred             ceEEE----ECCccCCCCCcceEECCCCeEEEEEEEEEcCCCCccceEEEEEhHHHHHHHHHHhhcCcccccceeEEEEE
Confidence            44577    9999999999999999999999998776655778899999998888776542     56778999999876


Q ss_pred             c------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceee
Q psy9257         367 I------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERT  433 (530)
Q Consensus       367 ~------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~t  433 (530)
                      .            ..|++|..|.++|+|+++||+.||+|++|||+.+.+|.+  +.+.+.. ..++.+.|+|.|++++++
T Consensus       276 l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~V~R~G~~~~  353 (455)
T PRK10139        276 MSADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNGKPLE  353 (455)
T ss_pred             CCHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            3            269999999999999999999999999999999999866  5555544 667889999999988877


Q ss_pred             EEeccCCC-----Cc-------cceeec--------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257         434 VTLHRDSS-----GH-------FGFHFN--------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       434 VtL~kd~~-----g~-------LGfs~~--------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      +++..+..     ..       .|+.+.        .|. |.+|.++++|+++||+.||+|++|||+++.++  +++...
T Consensus       354 l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~  431 (455)
T PRK10139        354 VEVTLDTSTSSSASAEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKV  431 (455)
T ss_pred             EEEEECCCCCcccccccccccccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHH
Confidence            76643211     11       222222        233 88999999999999999999999999999988  578888


Q ss_pred             HHhCCCEEEEEEEeCcch
Q psy9257         493 MEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       493 LkrsG~tVtLtVip~~~~  510 (530)
                      +++..+.+.|+|.|....
T Consensus       432 l~~~~~~v~l~v~R~g~~  449 (455)
T PRK10139        432 LAAKPAIIALQIVRGNES  449 (455)
T ss_pred             HHhCCCeEEEEEEECCEE
Confidence            886668899999887643

>PRK10942 serine endoprotease; Provisional

Probab=99.89  E-value=8.1e-23  Score=220.04  Aligned_cols=210  Identities=20%  Similarity=0.240  Sum_probs=169.9

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEE-----EeccCCCeeEEEEEe
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELV-----LCKDASGLIGLRVCA  366 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~-----L~K~s~G~LG~~V~~  366 (530)
                      ++.||    +|+++++|++++.+++..|+..+++..+..-+|+..|++||++.+.++.+.     -++..++|||+.+..
T Consensus       221 ~~~iq----tda~i~~GnSGGpL~n~~GeviGI~t~~~~~~g~~~g~gfaIP~~~~~~v~~~l~~~g~v~rg~lGv~~~~  296 (473)
T PRK10942        221 ENFIQ----TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTE  296 (473)
T ss_pred             cceEE----eccccCCCCCcCccCCCCCeEEEEEEEEEcCCCCcccEEEEEEHHHHHHHHHHHHhccccccceeeeEeee
Confidence            45677    999999999999999999999999877666578889999999877766443     256788999999875


Q ss_pred             c------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHH-HhCCCCeEEEEEecCCceee
Q psy9257         367 I------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIL-KAAPVNNIRVVIRDRPLERT  433 (530)
Q Consensus       367 ~------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LL-k~a~G~~VtLtVrR~~~e~t  433 (530)
                      .            ..|++|..|.++|+|+++||+.||+|++|||+.|.++.+  +...+ ....++.+.|+|.|+++.++
T Consensus       297 l~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~G~~~~  374 (473)
T PRK10942        297 LNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLTLGLLRDGKPVN  374 (473)
T ss_pred             cCHHHHHhcCCCCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCeEEE
Confidence            3            269999999999999999999999999999999999865  44444 34567889999999888777


Q ss_pred             EEeccCC---------CCccceeec--------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         434 VTLHRDS---------SGHFGFHFN--------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       434 VtL~kd~---------~g~LGfs~~--------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      +.+....         ...+|+...        .|. |.+|.++++|+++||+.||+|++|||++|.++  +++.+++++
T Consensus       375 v~v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~  452 (473)
T PRK10942        375 VNVELQQSSQNQVDSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDS  452 (473)
T ss_pred             EEEEeCcCcccccccccccccceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence            6653211         112454322        233 88999999999999999999999999999998  578888887


Q ss_pred             CCCEEEEEEEeCcc
Q psy9257         496 GGSVLTLTLIPTSM  509 (530)
Q Consensus       496 sG~tVtLtVip~~~  509 (530)
                      .++.+.|+|.|...
T Consensus       453 ~~~~v~l~V~R~g~  466 (473)
T PRK10942        453 KPSVLALNIQRGDS  466 (473)
T ss_pred             CCCeEEEEEEECCE
Confidence            67889999988764

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.88  E-value=1.4e-22  Score=214.43  Aligned_cols=211  Identities=26%  Similarity=0.366  Sum_probs=170.3

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA  366 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~  366 (530)
                      ++.|+    +++++++|++++++++..|+..+++..+..-+|+..|++||++.+.++.+..     ++..++|||+++..
T Consensus       167 ~~~i~----tda~i~~GnSGGpl~n~~G~viGI~~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~~g~~~~~~lGi~~~~  242 (428)
T TIGR02037       167 ENFIQ----TDAAINPGNSGGPLVNLRGEVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIEGGKVQRGWLGVTIQE  242 (428)
T ss_pred             cceEE----ECCCCCCCCCCCceECCCCeEEEEEeEEEcCCCCccceEEEEEhHHHHHHHHHHHhcCcCcCCcCceEeec
Confidence            44566    8999999999999999999999997776655777899999998766665543     45668999999987


Q ss_pred             cC------------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHH-hCCCCeEEEEEecCCceee
Q psy9257         367 IN------------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLERT  433 (530)
Q Consensus       367 ~~------------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk-~a~G~~VtLtVrR~~~e~t  433 (530)
                      .+            .|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +..++. ...++.+.|+|.|++++++
T Consensus       243 ~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~--~~~~l~~~~~g~~v~l~v~R~g~~~~  320 (428)
T TIGR02037       243 VTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFAD--LRRAIGTLKPGKKVTLGILRKGKEKT  320 (428)
T ss_pred             CCHHHHHHcCCCCCCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            43            78999999999999999999999999999999998765  445554 3567899999999888877


Q ss_pred             EEecc--C-------CCCccceeec----------------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChH
Q psy9257         434 VTLHR--D-------SSGHFGFHFN----------------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDK  487 (530)
Q Consensus       434 VtL~k--d-------~~g~LGfs~~----------------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~e  487 (530)
                      +++.-  .       ....+|+.+.                .|. |.+|.++++|+++||+.||+|++|||++|.++  +
T Consensus       321 ~~v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~  398 (428)
T TIGR02037       321 ITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--A  398 (428)
T ss_pred             EEEEECcCCCccccccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--H
Confidence            66542  1       1123666553                244 88999999999999999999999999999987  5


Q ss_pred             HHHHHHHh--CCCEEEEEEEeCcch
Q psy9257         488 ELLEAMEK--GGSVLTLTLIPTSMY  510 (530)
Q Consensus       488 eVv~iLkr--sG~tVtLtVip~~~~  510 (530)
                      ++..++++  .++.+.|+|.|....
T Consensus       399 d~~~~l~~~~~g~~v~l~v~R~g~~  423 (428)
T TIGR02037       399 ELRKVLDRAKKGGRVALLILRGGAT  423 (428)
T ss_pred             HHHHHHHhcCCCCEEEEEEEECCEE
Confidence            68888874  578999999987643

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG3209|consensus

Probab=99.75  E-value=9.8e-18  Score=183.25  Aligned_cols=161  Identities=28%  Similarity=0.484  Sum_probs=139.4

Q ss_pred             eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC-CeEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV-NNIRV  423 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G-~~VtL  423 (530)
                      .|.|.+.+.| |||++-+++   ..++|..|.+.++|++.| |+.||.|+.|||..|.+.++.++..++..+.. .-|.|
T Consensus       652 dV~L~rkesG-FGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~L  730 (984)
T KOG3209|consen  652 DVFLRRKESG-FGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNL  730 (984)
T ss_pred             eEEEEeeccc-cceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEE
Confidence            4556665555 999998765   569999999999999999 99999999999999999999999999976543 56999


Q ss_pred             EEecCC----------------ceeeEEeccCCCCccceeeccC------cEEEEccCCHHHHcC-CCCCCEEEEEcCee
Q psy9257         424 VIRDRP----------------LERTVTLHRDSSGHFGFHFNKG------QIVSLVKDSSAARNG-LLVNHNILEVNGAN  480 (530)
Q Consensus       424 tVrR~~----------------~e~tVtL~kd~~g~LGfs~~~G------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~  480 (530)
                      +|||.-                -...|.|+++..+.|||.+...      -|..|..||+|+|+| |++||+|++|||+.
T Consensus       731 tVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~s  810 (984)
T KOG3209|consen  731 TVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQS  810 (984)
T ss_pred             EEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCee
Confidence            999831                1356888999888899998522      299999999999999 99999999999999


Q ss_pred             cCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         481 VVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       481 V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      +.++++.+++.+|+.+|-+|+|+|++....
T Consensus       811 I~~lsHadiv~LIKdaGlsVtLtIip~ee~  840 (984)
T KOG3209|consen  811 ILNLSHADIVSLIKDAGLSVTLTIIPPEEA  840 (984)
T ss_pred             eeccCchhHHHHHHhcCceEEEEEcChhcc
Confidence            999999999999999999999999987644

>KOG3605|consensus

Probab=99.70  E-value=3.1e-17  Score=178.21  Aligned_cols=173  Identities=28%  Similarity=0.510  Sum_probs=152.3

Q ss_pred             ccccceEEEeccCCCeeEEEEEecCCc-----EEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~~~G-----V~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      +...|+|.+-|.++..||+.+...+.|     |+|.....+++|+++| |..||+|++|||..+-++.....+.++|+.+
T Consensus       643 kE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~K  722 (829)
T KOG3605|consen  643 KENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLK  722 (829)
T ss_pred             hcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccc
Confidence            456677888888888899999886654     7788899999999999 9999999999999999999988888998766


Q ss_pred             C-CeEEEEEecCCceeeEEecc-CCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         418 V-NNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       418 G-~~VtLtVrR~~~e~tVtL~k-d~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      . ..|+|+|.+.+-..+|.|++ +....|||++.+|+|-++..|+.|+|.|+|+|++|++|||+.|.-..++.|+.+|..
T Consensus       723 nQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~  802 (829)
T KOG3605|consen  723 NQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSN  802 (829)
T ss_pred             ccceEEEEEecCCCceEEEeecccchhhccceeeCcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHH
Confidence            4 67899999887777777765 667789999999999999999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEEEeCcchhhhhhc
Q psy9257         496 GGSVLTLTLIPTSMYQHMMKK  516 (530)
Q Consensus       496 sG~tVtLtVip~~~~e~m~kk  516 (530)
                      +=++|.+..+|...++.++..
T Consensus       803 aVGEIhMKTMPasMfRLLTGQ  823 (829)
T KOG3605|consen  803 AVGEIHMKTMPAAMFRLLTGQ  823 (829)
T ss_pred             hhhhhhhhcchHHHHHHhhcC
Confidence            888888888888877776654

>KOG3209|consensus

Probab=99.70  E-value=2.4e-16  Score=172.59  Aligned_cols=157  Identities=27%  Similarity=0.480  Sum_probs=131.3

Q ss_pred             eEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      .|.+.+.++.+|||.+....  .+--|.+|.+||||++|| |+.||+|++|||+.|.++++.....++|.+ |..|+|+|
T Consensus       756 DV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKda-GlsVtLtI  834 (984)
T KOG3209|consen  756 DVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDA-GLSVTLTI  834 (984)
T ss_pred             eeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhc-CceEEEEE
Confidence            35566777888999887632  233499999999999999 999999999999999999999999999775 78899988


Q ss_pred             ecCC-----------------------------------------------------------ceeeEEeccCCCCccce
Q psy9257         426 RDRP-----------------------------------------------------------LERTVTLHRDSSGHFGF  446 (530)
Q Consensus       426 rR~~-----------------------------------------------------------~e~tVtL~kd~~g~LGf  446 (530)
                      .-..                                                           .-.+|+|.+...+ |||
T Consensus       835 ip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~kG-FGF  913 (984)
T KOG3209|consen  835 IPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAKG-FGF  913 (984)
T ss_pred             cChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccccc-cce
Confidence            6210                                                           0135566666665 999


Q ss_pred             eeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         447 HFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       447 s~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      ++++|.       |..+..+++|.++| +++||+|++|||+...+|++....++|+..|..+.|.+.+.
T Consensus       914 SiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~g  982 (984)
T KOG3209|consen  914 SIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRRG  982 (984)
T ss_pred             EeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEeccC
Confidence            999885       88999999999999 99999999999999999999999999999988888877653

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.58  E-value=2.5e-14  Score=153.34  Aligned_cols=136  Identities=13%  Similarity=0.196  Sum_probs=105.5

Q ss_pred             EEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccC-----------
Q psy9257         371 VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD-----------  439 (530)
Q Consensus       371 V~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd-----------  439 (530)
                      .+|..|.++|||++||||.||+|++|||+.+.++++ ....+.....++++.++|.|+++++++++.-.           
T Consensus       128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~-l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~  206 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDA-VRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQ  206 (449)
T ss_pred             ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHH-HHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCcccc
Confidence            478999999999999999999999999999999866 34445555667889999999887655443221           


Q ss_pred             -CCCccceeecc----CcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcc
Q psy9257         440 -SSGHFGFHFNK----GQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSM  509 (530)
Q Consensus       440 -~~g~LGfs~~~----GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~  509 (530)
                       ....+|+....    -.|..|.++|+|+++||+.||+|++|||++|.++  +++...+++ .++.+.+++.|+..
T Consensus       207 ~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~  280 (449)
T PRK10779        207 DPVSSLGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGS  280 (449)
T ss_pred             chhhcccccccCCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCE
Confidence             11235654332    2488999999999999999999999999999988  467777764 56678888877653

>TIGR00054 RIP metalloprotease RseP

Probab=99.46  E-value=4.8e-13  Score=142.51  Aligned_cols=130  Identities=20%  Similarity=0.306  Sum_probs=100.5

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCccceee
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHF  448 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~  448 (530)
                      .|.+|..|.++|+|++|||+.||+|++|||+.+.++.+  +.+.+.... ..+.+++.|+++..++.+.      +|+..
T Consensus       128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~d--l~~~ia~~~-~~v~~~I~r~g~~~~l~v~------l~~~~  198 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKD--VRQQIADIA-GEPMVEILAERENWTFEVM------KELIP  198 (420)
T ss_pred             CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhhc-ccceEEEEEecCceEeccc------cccee
Confidence            67899999999999999999999999999999999866  444444444 6788888886665554332      22211


Q ss_pred             c----cCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcc
Q psy9257         449 N----KGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSM  509 (530)
Q Consensus       449 ~----~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~  509 (530)
                      .    +-.|.+|.++++|+++||+.||+|++|||++|.++  +++...++. .++.+.+++.|+..
T Consensus       199 ~~~~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~  262 (420)
T TIGR00054       199 RGPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGE  262 (420)
T ss_pred             cCCCcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCE
Confidence            1    12488999999999999999999999999999988  567777764 55667777777653

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10898 serine endoprotease; Provisional

Probab=99.41  E-value=2.6e-13  Score=141.63  Aligned_cols=136  Identities=18%  Similarity=0.166  Sum_probs=108.7

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCCC---CccceechhcccccceEEE-----eccCCCeeEEEEEec-----
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLSS---SGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAI-----  367 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG---~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~-----  367 (530)
                      +|+++++|++++++++..|+..+++.+...-++   ...|++||++.+.++.+..     ++..++|||+.+...     
T Consensus       191 tda~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~G~~~~~~lGi~~~~~~~~~~  270 (353)
T PRK10898        191 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHA  270 (353)
T ss_pred             eccccCCCCCcceEECCCCeEEEEEEEEecccCCCCcccceEEEEchHHHHHHHHHHhhcCcccccccceEEEECCHHHH
Confidence            899999999999999999999999765443222   2378999998777665542     455678999988753     


Q ss_pred             -------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHH-hCCCCeEEEEEecCCceeeEEecc
Q psy9257         368 -------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLERTVTLHR  438 (530)
Q Consensus       368 -------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk-~a~G~~VtLtVrR~~~e~tVtL~k  438 (530)
                             ..|++|..|.++++|+++||+.||+|++|||+.+.++.+  +.+.+. ...++.+.|+|+|+++.+++.+..
T Consensus       271 ~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l  347 (353)
T PRK10898        271 QGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALE--TMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI  347 (353)
T ss_pred             HhcCCCCCCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence                   269999999999999999999999999999999988755  444443 367789999999988877766543

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=99.36  E-value=6.7e-13  Score=138.33  Aligned_cols=136  Identities=18%  Similarity=0.204  Sum_probs=109.6

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCC--CCccceechhcccccceEEE-----eccCCCeeEEEEEecC-----
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLS--SSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAIN-----  368 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvS--G~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~~-----  368 (530)
                      +|++++++|+++++++..|+..+++.+...-+  +...|++|+++.+.++.+..     ++..++|||+.+...+     
T Consensus       191 tda~i~~GnSGGpl~n~~G~vIGI~~~~~~~~~~~~~~g~~faIP~~~~~~vl~~l~~~g~~~r~~lGv~~~~~~~~~~~  270 (351)
T TIGR02038       191 TDAAINAGNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYIGVSGEDINSVVAQ  270 (351)
T ss_pred             ECCccCCCCCcceEECCCCeEEEEEeeeecccCCCCccceEEEecHHHHHHHHHHHhhcCcccceEeeeEEEECCHHHHH
Confidence            89999999999999999999999976543322  23479999998777776542     3456789999987532     


Q ss_pred             -------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEecc
Q psy9257         369 -------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLHR  438 (530)
Q Consensus       369 -------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~k  438 (530)
                             .|++|..|.++++|+++||+.||+|++|||+.+.++.+  +.+.++. ..++.+.|+|.|+++.+++++..
T Consensus       271 ~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l  346 (351)
T TIGR02038       271 GLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEE--LMDRIAETRPGSKVMVTVLRQGKQLELPVTI  346 (351)
T ss_pred             hcCCCccccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence                   58999999999999999999999999999999998765  5555544 56789999999988877776643

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.31  E-value=9.9e-12  Score=103.09  Aligned_cols=78  Identities=36%  Similarity=0.512  Sum_probs=65.2

Q ss_pred             CeeEEEEEecCC--cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHH-HhCCCCeEEEEEecCCceeeE
Q psy9257         358 GLIGLRVCAINE--GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIL-KAAPVNNIRVVIRDRPLERTV  434 (530)
Q Consensus       358 G~LG~~V~~~~~--GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LL-k~a~G~~VtLtVrR~~~e~tV  434 (530)
                      ++||+.+.....  |++|..|.++|||+++||+.||+|++|||..+.++.+  +...+ +...++.|.|+|.|+++.+++
T Consensus         1 ~~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~--~~~~l~~~~~g~~v~l~v~R~g~~~~~   78 (82)
T PF13180_consen    1 GGLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSED--LVNILSKGKPGDTVTLTVLRDGEELTV   78 (82)
T ss_dssp             -E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHH--HHHHHHCSSTTSEEEEEEEETTEEEEE
T ss_pred             CEECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHH--HHHHHHhCCCCCEEEEEEEECCEEEEE
Confidence            579999998765  9999999999999999999999999999999988655  44444 667789999999999998887


Q ss_pred             Eec
Q psy9257         435 TLH  437 (530)
Q Consensus       435 tL~  437 (530)
                      +++
T Consensus        79 ~v~   81 (82)
T PF13180_consen   79 EVT   81 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

...

>KOG3580|consensus

Probab=99.27  E-value=4e-11  Score=130.33  Aligned_cols=160  Identities=19%  Similarity=0.267  Sum_probs=124.0

Q ss_pred             ceEEEeccCCCeeEEEEEecC---------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      ..+.|.|+.+.+|||.+.++.         ..++|+.|.+|+||+- -|+.||+|+.|||..+.+..+..+.+.|+++ +
T Consensus        10 hTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG-~LQenDrvvMVNGvsMenv~haFAvQqLrks-g   87 (1027)
T KOG3580|consen   10 HTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEG-LLQENDRVVMVNGVSMENVLHAFAVQQLRKS-G   87 (1027)
T ss_pred             heeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCccc-ccccCCeEEEEcCcchhhhHHHHHHHHHHhh-c
Confidence            467888988888999998742         3589999999999983 2999999999999999999999999999875 5


Q ss_pred             CeEEEEEecCCce-------------------------------------------------------------------
Q psy9257         419 NNIRVVIRDRPLE-------------------------------------------------------------------  431 (530)
Q Consensus       419 ~~VtLtVrR~~~e-------------------------------------------------------------------  431 (530)
                      +...++|+|..+.                                                                   
T Consensus        88 K~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer  167 (1027)
T KOG3580|consen   88 KVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRER  167 (1027)
T ss_pred             cceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccccccc
Confidence            6677777642100                                                                   


Q ss_pred             --------------------------------eeEEecc-CCCCccceeeccCc-EEEEccCCHHHHcC-CCCCCEEEEE
Q psy9257         432 --------------------------------RTVTLHR-DSSGHFGFHFNKGQ-IVSLVKDSSAARNG-LLVNHNILEV  476 (530)
Q Consensus       432 --------------------------------~tVtL~k-d~~g~LGfs~~~Gv-V~sVv~gSpAarAG-Lr~GDrILeV  476 (530)
                                                      ..+.|.| ....++|+.+..-+ |+.|...+.|++.| |+.||+||+|
T Consensus       168 ~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkI  247 (1027)
T KOG3580|consen  168 DLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKI  247 (1027)
T ss_pred             ccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEE
Confidence                                            0111111 11223444442222 88899999999987 9999999999


Q ss_pred             cCeecCCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257         477 NGANVVGLKDKELLEAMEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       477 NGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~  509 (530)
                      ||....+|+-.+...+|+++.+.+.|+|.+...
T Consensus       248 NGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~  280 (1027)
T KOG3580|consen  248 NGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQ  280 (1027)
T ss_pred             CcEeeccccchhHHHHHHhccCceEEEEEecCC
Confidence            999999999889999999999999999988753

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.24  E-value=6.1e-11  Score=97.66  Aligned_cols=77  Identities=36%  Similarity=0.627  Sum_probs=67.6

Q ss_pred             eEEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      +|.+.|...+.|||++....    .+++|..|.++|+|+++||+.||+|++|||+.+.+++++++..+++.+.+ .|+|+
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~   79 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLT   79 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEE
Confidence            35666667888999999855    38999999999999999999999999999999999999999999988754 78887


Q ss_pred             Ee
Q psy9257         425 IR  426 (530)
Q Consensus       425 Vr  426 (530)
                      |+
T Consensus        80 V~   81 (81)
T PF00595_consen   80 VQ   81 (81)
T ss_dssp             EE
T ss_pred             EC
Confidence            64

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3.5e-11  Score=124.38  Aligned_cols=144  Identities=22%  Similarity=0.232  Sum_probs=118.9

Q ss_pred             chHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEE
Q psy9257         291 ASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVC  365 (530)
Q Consensus       291 ~ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~  365 (530)
                      .++.||    +|+++++++++++.++..++..+++..+...+++..||+|+++...++.+..     ++..++++|+.+.
T Consensus       181 ~~~~Iq----tdAain~gnsGgpl~n~~g~~iGint~~~~~~~~~~gigfaiP~~~~~~v~~~l~~~G~v~~~~lgv~~~  256 (347)
T COG0265         181 YVNFIQ----TDAAINPGNSGGPLVNIDGEVVGINTAIIAPSGGSSGIGFAIPVNLVAPVLDELISKGKVVRGYLGVIGE  256 (347)
T ss_pred             ccchhh----cccccCCCCCCCceEcCCCcEEEEEEEEecCCCCcceeEEEecHHHHHHHHHHHHHcCCccccccceEEE
Confidence            667888    9999999999999999999999998887777888899999997776665443     3566888898866


Q ss_pred             ec----------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEE
Q psy9257         366 AI----------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT  435 (530)
Q Consensus       366 ~~----------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVt  435 (530)
                      ..          ..|++|..|.++++|+++|++.||.|+++||+.+.+..+ ....+.....+..+.+.+.|+++++++.
T Consensus       257 ~~~~~~~~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~-l~~~v~~~~~g~~v~~~~~r~g~~~~~~  335 (347)
T COG0265         257 PLTADIALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSD-LVAAVASNRPGDEVALKLLRGGKERELA  335 (347)
T ss_pred             EcccccccCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHH-HHHHHhccCCCCEEEEEEEECCEEEEEE
Confidence            42          358999999999999999999999999999999998655 4455555556889999999998887776


Q ss_pred             eccC
Q psy9257         436 LHRD  439 (530)
Q Consensus       436 L~kd  439 (530)
                      +...
T Consensus       336 v~l~  339 (347)
T COG0265         336 VTLG  339 (347)
T ss_pred             EEec
Confidence            6543

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.18  E-value=3e-10  Score=93.53  Aligned_cols=81  Identities=35%  Similarity=0.563  Sum_probs=70.3

Q ss_pred             CeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC-CceeeEEe
Q psy9257         358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR-PLERTVTL  436 (530)
Q Consensus       358 G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~-~~e~tVtL  436 (530)
                      ++||+.+.....+++|..|.++++|+++||+.||+|++|||..+.++...++..+++...+..+.|++.|+ ++.+++++
T Consensus         2 ~~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~   81 (85)
T cd00988           2 GGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTL   81 (85)
T ss_pred             eEEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEE
Confidence            56999998777899999999999999999999999999999999999666677888766678899999988 77777766


Q ss_pred             cc
Q psy9257         437 HR  438 (530)
Q Consensus       437 ~k  438 (530)
                      .+
T Consensus        82 ~~   83 (85)
T cd00988          82 TR   83 (85)
T ss_pred             EE
Confidence            53

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.09  E-value=7.6e-10  Score=87.93  Aligned_cols=68  Identities=35%  Similarity=0.560  Sum_probs=61.2

Q ss_pred             eeEEEEEecCC-cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         359 LIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       359 ~LG~~V~~~~~-GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      +|||.+..... +++|..|.++++|+++||+.||+|++|||+.+.+++.+++.++++...+..++|+|+
T Consensus         2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~   70 (70)
T cd00136           2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTVR   70 (70)
T ss_pred             CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEEC
Confidence            58999987665 999999999999999999999999999999999998888999998877788888763

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3580|consensus

Probab=99.04  E-value=1.1e-09  Score=119.23  Aligned_cols=149  Identities=23%  Similarity=0.356  Sum_probs=113.2

Q ss_pred             ccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCcee
Q psy9257         354 KDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLER  432 (530)
Q Consensus       354 K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~  432 (530)
                      ......+|+++.   .-|||..+...+-|++.| |+.||+||+|||....+++...+.+++.+..| ++.|+|.|+....
T Consensus       207 sR~nEEyGlrLg---SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~G-KL~lvVlRD~~qt  282 (1027)
T KOG3580|consen  207 SRANEEYGLRLG---SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDSQQT  282 (1027)
T ss_pred             eccchhhccccc---chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccC-ceEEEEEecCCce
Confidence            344556888875   469999999999888877 99999999999999999999889999977655 4666665421100


Q ss_pred             eE------------------------------------------------------------------------------
Q psy9257         433 TV------------------------------------------------------------------------------  434 (530)
Q Consensus       433 tV------------------------------------------------------------------------------  434 (530)
                      -|                                                                              
T Consensus       283 LiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~tPvks~~d~~  362 (1027)
T KOG3580|consen  283 LINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATPTPVKSTGDIA  362 (1027)
T ss_pred             eeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCCCCccCccccC
Confidence            00                                                                              


Q ss_pred             -------Eec---------------------------------------c-CCCCccceeeccCc-----EEEEccCCHH
Q psy9257         435 -------TLH---------------------------------------R-DSSGHFGFHFNKGQ-----IVSLVKDSSA  462 (530)
Q Consensus       435 -------tL~---------------------------------------k-d~~g~LGfs~~~Gv-----V~sVv~gSpA  462 (530)
                             ++.                                       + .....+|+.+.+|.     |..|..|++|
T Consensus       363 ~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRLAGGNDVGIFVaGvqegspA  442 (1027)
T KOG3580|consen  363 GTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGVQEGSPA  442 (1027)
T ss_pred             CccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEeccCCceeEEEeecccCCch
Confidence                   000                                       0 01123677777664     7889999999


Q ss_pred             HHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEe
Q psy9257         463 ARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIP  506 (530)
Q Consensus       463 arAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip  506 (530)
                      ++.||+.||+||.||.++..++..++.+..|.  -.|+.++|+..+
T Consensus       443 ~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~  488 (1027)
T KOG3580|consen  443 EQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQS  488 (1027)
T ss_pred             hhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhh
Confidence            99999999999999999999999888877765  567788877644

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.03  E-value=1.8e-09  Score=87.56  Aligned_cols=77  Identities=25%  Similarity=0.388  Sum_probs=64.9

Q ss_pred             eeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEec
Q psy9257         359 LIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       359 ~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~  437 (530)
                      ||||........++|..|.++++|+++||+.||+|++|||+.+.++.+  +..++....+..+.+++.|+++.+++.+.
T Consensus         2 ~~~~~~g~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~--~~~~l~~~~~~~~~l~v~r~~~~~~~~l~   78 (79)
T cd00989           2 ILGFVPGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWED--LVDAVQENPGKPLTLTVERNGETITLTLT   78 (79)
T ss_pred             eeeEeccCCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHHCCCceEEEEEEECCEEEEEEec
Confidence            688888766677999999999999999999999999999999998754  66777666577899999988777766653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.02  E-value=1.8e-09  Score=89.00  Aligned_cols=73  Identities=36%  Similarity=0.610  Sum_probs=64.4

Q ss_pred             eEEeccCCCCccceeecc-------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         433 TVTLHRDSSGHFGFHFNK-------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~-------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      +|+|.++..+.|||.+..       +. |.+|.++++|+++||+.||+|++|||+++.+++++++..+++.+++.++|+|
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V   80 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV   80 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence            356777677789999863       22 8999999999999999999999999999999999999999999988999987


Q ss_pred             E
Q psy9257         505 I  505 (530)
Q Consensus       505 i  505 (530)
                      .
T Consensus        81 ~   81 (81)
T PF00595_consen   81 Q   81 (81)
T ss_dssp             E
T ss_pred             C
Confidence            4

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.00  E-value=4.2e-09  Score=85.61  Aligned_cols=77  Identities=35%  Similarity=0.596  Sum_probs=64.2

Q ss_pred             ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      +++.+.+...+.|||.+....   .|++|..|.++++|+++||+.||+|++|||..+.+++.+++..+++...+ .+.|+
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~-~v~l~   80 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EVTLT   80 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCC-eEEEE
Confidence            355666665778999998764   58999999999999999999999999999999998888888999877543 56665


Q ss_pred             E
Q psy9257         425 I  425 (530)
Q Consensus       425 V  425 (530)
                      +
T Consensus        81 v   81 (82)
T cd00992          81 V   81 (82)
T ss_pred             E
Confidence            4

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.96  E-value=8.9e-09  Score=83.51  Aligned_cols=78  Identities=32%  Similarity=0.475  Sum_probs=64.7

Q ss_pred             eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      .+.+.+.. +.|||++....   .|++|..|.++++|+++||+.||+|++|||+.+.++.+.....+++.. +..+.|++
T Consensus         4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~-~~~~~l~i   81 (85)
T smart00228        4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKVTLTV   81 (85)
T ss_pred             EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEE
Confidence            34455555 78999998654   699999999999999999999999999999999999887777777664 45788888


Q ss_pred             ecC
Q psy9257         426 RDR  428 (530)
Q Consensus       426 rR~  428 (530)
                      .|+
T Consensus        82 ~r~   84 (85)
T smart00228       82 LRG   84 (85)
T ss_pred             EeC
Confidence            775

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.93  E-value=7.5e-09  Score=84.42  Aligned_cols=74  Identities=24%  Similarity=0.267  Sum_probs=60.6

Q ss_pred             eeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEec
Q psy9257         359 LIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       359 ~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~  437 (530)
                      ++|+.+...+.|++|..|.++|+|+++||+.||+|++|||+.+.+|.+     +++. ..++.+.+++.|+++.+++.+.
T Consensus         2 ~~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~~-----~l~~~~~~~~v~l~v~r~g~~~~~~v~   76 (80)
T cd00990           2 YLGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQD-----RLKEYQAGDPVELTVFRDDRLIEVPLT   76 (80)
T ss_pred             cccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHHH-----HHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence            688988876778999999999999999999999999999999987432     3333 3567899999998877766554

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.86  E-value=1.3e-08  Score=84.34  Aligned_cols=68  Identities=31%  Similarity=0.318  Sum_probs=58.1

Q ss_pred             CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEEec
Q psy9257         368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       368 ~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVtL~  437 (530)
                      ..|++|..|.++|+|+++||+.||+|++|||+.+.+|.+  +..++... .+..+.|++.|+++.+++++.
T Consensus         9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~d--~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~   77 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLED--FMEALKPTKPGEVITVTVLPSTTKLTNVST   77 (79)
T ss_pred             CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHHH--HHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence            478999999999999999999999999999999998765  66666654 478899999998877776654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.85  E-value=2e-08  Score=83.04  Aligned_cols=65  Identities=35%  Similarity=0.538  Sum_probs=54.2

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEE
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVT  435 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVt  435 (530)
                      .|++|..|.++++|+++||+.||+|++|||+.+.++.+  +..++... .+..+.|.+.|+++.+.+.
T Consensus        24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~--~~~~l~~~~~~~~i~l~v~r~g~~~~~~   89 (90)
T cd00987          24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVAD--LRRALAELKPGDKVTLTVLRGGKELTVT   89 (90)
T ss_pred             CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence            58999999999999999999999999999999998765  55555543 4688999998887665553

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.70  E-value=6.5e-08  Score=103.47  Aligned_cols=86  Identities=30%  Similarity=0.456  Sum_probs=76.7

Q ss_pred             eccCCCeeEEEEEecC-CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC--C
Q psy9257         353 CKDASGLIGLRVCAIN-EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR--P  429 (530)
Q Consensus       353 ~K~s~G~LG~~V~~~~-~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~--~  429 (530)
                      ++.+.+++|+++...+ .++.|..+.+++||+++||+.||+|+.|||+.+.+...+++...++...|..|+|++.|.  .
T Consensus        95 ~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~  174 (406)
T COG0793          95 TSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGG  174 (406)
T ss_pred             ccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCC
Confidence            5568889999999877 899999999999999999999999999999999999988899999999999999999995  4


Q ss_pred             ceeeEEecc
Q psy9257         430 LERTVTLHR  438 (530)
Q Consensus       430 ~e~tVtL~k  438 (530)
                      +.+++++.+
T Consensus       175 k~~~v~l~R  183 (406)
T COG0793         175 KPFTVTLTR  183 (406)
T ss_pred             ceeEEEEEE
Confidence            556666654

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.69  E-value=1.1e-07  Score=100.85  Aligned_cols=84  Identities=31%  Similarity=0.478  Sum_probs=70.0

Q ss_pred             cCCCeeEEEEEecC------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         355 DASGLIGLRVCAIN------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       355 ~s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      ....++|+.+....      .|++|..|.++|||+++||+.||+|++|||+.|.++....+..+++...+..|.|+|.|.
T Consensus        82 ~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~  161 (389)
T PLN00049         82 GAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG  161 (389)
T ss_pred             CCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence            44556888876422      289999999999999999999999999999999998776777888777788999999998


Q ss_pred             CceeeEEecc
Q psy9257         429 PLERTVTLHR  438 (530)
Q Consensus       429 ~~e~tVtL~k  438 (530)
                      ++.++++|.+
T Consensus       162 g~~~~~~l~r  171 (389)
T PLN00049        162 PETRLVTLTR  171 (389)
T ss_pred             CEEEEEEEEe
Confidence            8777777654

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.69  E-value=9.8e-08  Score=102.59  Aligned_cols=139  Identities=17%  Similarity=0.193  Sum_probs=101.1

Q ss_pred             EEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe-cCCceeeEEeccCCCCccceeeccC
Q psy9257         373 VCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR-DRPLERTVTLHRDSSGHFGFHFNKG  451 (530)
Q Consensus       373 Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr-R~~~e~tVtL~kd~~g~LGfs~~~G  451 (530)
                      |..|.+||+|+++||+.||+|++|||+.+.+|.+  +...+.   +..+.++|. |+++.+++.+.++....||+.|..+
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D--~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~   76 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLID--YQFLCA---DEELELEVLDANGESHQIEIEKDLDEDLGLEFTTA   76 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHhc---CCcEEEEEEcCCCeEEEEEEecCCCCCCcEEeccc
Confidence            6789999999999999999999999999999876  444442   466888886 7788899999999888899998643


Q ss_pred             c------------EEEEccCCHHHHcC--CCCCCEEE---EEcCeecCCCChHHHHHHHHhCCCEEEEEEEe--Ccchhh
Q psy9257         452 Q------------IVSLVKDSSAARNG--LLVNHNIL---EVNGANVVGLKDKELLEAMEKGGSVLTLTLIP--TSMYQH  512 (530)
Q Consensus       452 v------------V~sVv~gSpAarAG--Lr~GDrIL---eVNGq~V~gls~eeVv~iLkrsG~tVtLtVip--~~~~e~  512 (530)
                      .            --.|..--+..|..  +|..|.-+   .=|-..+++++.+++.++++..=..+.+.|.-  ...+..
T Consensus        77 ~~d~~~~C~N~C~FCFidQlP~gmR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~  156 (433)
T TIGR03279        77 LFDGLIQCNNRCPFCFIDQQPPGKRESLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRAR  156 (433)
T ss_pred             cCCcccccCCcCceEeccCCCCCCcCcceeccCcchhhhhccceeeecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHH
Confidence            2            11233323334443  56666543   44778899999999999999655667776643  333444


Q ss_pred             hhhc
Q psy9257         513 MMKK  516 (530)
Q Consensus       513 m~kk  516 (530)
                      |.++
T Consensus       157 ll~n  160 (433)
T TIGR03279       157 LLKN  160 (433)
T ss_pred             HhCC
Confidence            4443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.68  E-value=9.7e-08  Score=98.86  Aligned_cols=76  Identities=24%  Similarity=0.388  Sum_probs=65.3

Q ss_pred             CCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCce
Q psy9257         356 ASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE  431 (530)
Q Consensus       356 s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e  431 (530)
                      ...+||+++.....+++|..|.++|+|+++||+.||+|++|||+.+.+|+..++..+++...+..+.|+|.|+++.
T Consensus        49 ~~~~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~  124 (334)
T TIGR00225        49 SLEGIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS  124 (334)
T ss_pred             ceEEEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence            3456899988777789999999999999999999999999999999998765677777666788999999987543

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.65  E-value=1.6e-07  Score=77.09  Aligned_cols=67  Identities=21%  Similarity=0.375  Sum_probs=55.6

Q ss_pred             CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEec
Q psy9257         368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       368 ~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~  437 (530)
                      ..|++|..|.++|+|+. ||+.||+|++|||..+.++.+  +..++.. ..+..+.|++.|+++.+++++.
T Consensus         7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~~--~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~   74 (79)
T cd00986           7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAEE--LIDYIQSKKEGDTVKLKVKREEKELPEDLI   74 (79)
T ss_pred             ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence            46899999999999987 899999999999999998655  6666664 5578899999998877666553

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.62  E-value=3.7e-07  Score=74.17  Aligned_cols=72  Identities=40%  Similarity=0.649  Sum_probs=60.2

Q ss_pred             eEEeccCCCCccceeeccC------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         433 TVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      .+.+.+.....+||.+.++      . |..|..+++|+++||+.||+|++|||+++.++..+++...++.....++|++
T Consensus         3 ~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992           3 TVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             EEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            4555565566788888743      2 8899999999999999999999999999998888999999998777777765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.55  E-value=8.7e-07  Score=71.82  Aligned_cols=74  Identities=39%  Similarity=0.599  Sum_probs=60.9

Q ss_pred             eEEeccCCCCccceeecc------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         433 TVTLHRDSSGHFGFHFNK------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      .+.+.+.. ..+||.+..      |. |..|.++++|+++||+.||+|++|||+.+.++.+.++...++..++.+.|++.
T Consensus         4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~   82 (85)
T smart00228        4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVL   82 (85)
T ss_pred             EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence            34455555 668888764      33 88999999999999999999999999999999888888888877778888887


Q ss_pred             eC
Q psy9257         506 PT  507 (530)
Q Consensus       506 p~  507 (530)
                      +.
T Consensus        83 r~   84 (85)
T smart00228       83 RG   84 (85)
T ss_pred             eC
Confidence            64

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.46  E-value=1e-06  Score=69.88  Aligned_cols=61  Identities=36%  Similarity=0.559  Sum_probs=52.2

Q ss_pred             cceeecc----C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC-CCEEEEEE
Q psy9257         444 FGFHFNK----G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG-GSVLTLTL  504 (530)
Q Consensus       444 LGfs~~~----G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs-G~tVtLtV  504 (530)
                      +||.+..    + .|..|.++++|+++||+.||+|++|||+++.+++.+++..+++.. ++.++|++
T Consensus         3 ~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           3 LGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             ccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            6666653    2 288999999999999999999999999999999988999999864 47888876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.46  E-value=5.2e-07  Score=74.83  Aligned_cols=58  Identities=31%  Similarity=0.447  Sum_probs=49.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchhh
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQH  512 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e~  512 (530)
                      |.+|.++++|+++||+.||+|++|||+.+.++  .++...+.  +.|+.++|++.|......
T Consensus        18 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~   77 (82)
T PF13180_consen   18 VVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGEELT   77 (82)
T ss_dssp             EEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTEEEE
T ss_pred             EEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEE
Confidence            88999999999999999999999999999776  56777775  678999999999765433

...

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.42  E-value=1.2e-06  Score=88.74  Aligned_cols=80  Identities=18%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             cCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCc
Q psy9257         355 DASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPL  430 (530)
Q Consensus       355 ~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~  430 (530)
                      .-.+++|+.....+   .|+.|..+.++++|+++||+.||+|++|||+.+.++.+  +.+++.+ ..++.+.|+|.|+++
T Consensus       174 ~~~~~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~--~~~~l~~~~~~~~v~l~V~R~G~  251 (259)
T TIGR01713       174 KMFDYIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQ--AFQALQMLREETNLTLTVERDGQ  251 (259)
T ss_pred             hhhheEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCeEEEEEEECCE
Confidence            34677888876433   69999999999999999999999999999999998766  5556655 456789999999998


Q ss_pred             eeeEEe
Q psy9257         431 ERTVTL  436 (530)
Q Consensus       431 e~tVtL  436 (530)
                      .+++.+
T Consensus       252 ~~~i~v  257 (259)
T TIGR01713       252 REDIYV  257 (259)
T ss_pred             EEEEEE
Confidence            877765

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3549|consensus

Probab=98.42  E-value=6.9e-07  Score=93.22  Aligned_cols=77  Identities=35%  Similarity=0.558  Sum_probs=71.8

Q ss_pred             CceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      ..+++|+|.+...|.||+++++|.       |..|.++..|+..| |-+||-|++|||..|....+++++.+|+.+|++|
T Consensus        53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV  132 (505)
T KOG3549|consen   53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV  132 (505)
T ss_pred             CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence            467899999999999999999884       88899999999999 7799999999999999999999999999999999


Q ss_pred             EEEEE
Q psy9257         501 TLTLI  505 (530)
Q Consensus       501 tLtVi  505 (530)
                      +|+|.
T Consensus       133 tlTV~  137 (505)
T KOG3549|consen  133 TLTVK  137 (505)
T ss_pred             EEEeH
Confidence            99995

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.41  E-value=1e-06  Score=99.50  Aligned_cols=84  Identities=24%  Similarity=0.318  Sum_probs=69.6

Q ss_pred             cCCCeeEEEEEecCCcEEEEEeccCCHhhhc-CCCCCCEEEEECC-----EEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         355 DASGLIGLRVCAINEGVFVCLVERGSPASLV-GLRFGDQILSING-----ETVAGYNMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       355 ~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakA-GLq~GDqILaING-----~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      ...+++|+.+...+.+++|..|.+||||+++ ||+.||+|++|||     ..+.+|..+.+..+++...|..|.|+|+|.
T Consensus       241 ~~~~GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        241 LSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             CceeEEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            4456789999877778999999999999998 8999999999994     356688888899999999999999999873


Q ss_pred             ---CceeeEEecc
Q psy9257         429 ---PLERTVTLHR  438 (530)
Q Consensus       429 ---~~e~tVtL~k  438 (530)
                         +..++++|.+
T Consensus       321 ~~~~~~~~vtl~R  333 (667)
T PRK11186        321 GKGTKTRIVTLTR  333 (667)
T ss_pred             CCCCceEEEEEEe
Confidence               3456666543

>TIGR00054 RIP metalloprotease RseP

Probab=98.37  E-value=1.3e-06  Score=93.72  Aligned_cols=70  Identities=24%  Similarity=0.344  Sum_probs=61.2

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCC
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS  440 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~  440 (530)
                      .+++|..|.++|+|+++||+.||+|++|||+.+.+|.+  +.+.++...++.+.++|+|+++.+++++..+.
T Consensus       203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~  272 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTD--FVSAVKENPGKSMDIKVERNGETLSISLTPEA  272 (420)
T ss_pred             cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCceEEEEEECCEEEEEEEEEcC
Confidence            47899999999999999999999999999999998765  77777777778899999999988888776643

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3834|consensus

Probab=98.36  E-value=2.9e-06  Score=90.52  Aligned_cols=136  Identities=26%  Similarity=0.384  Sum_probs=98.3

Q ss_pred             CCcEEEEEeccCCHhhhcCCC-CCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec--CCceeeEEeccCCCCc-
Q psy9257         368 NEGVFVCLVERGSPASLVGLR-FGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD--RPLERTVTLHRDSSGH-  443 (530)
Q Consensus       368 ~~GV~Vs~V~pGSPAakAGLq-~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR--~~~e~tVtL~kd~~g~-  443 (530)
                      ..|.-|-+|+++|+|.++||. +-|.|++|||..+..- .+.+..+++... ++|+++|..  .-+.|.+.|....... 
T Consensus        14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~s-ekVkltv~n~kt~~~R~v~I~ps~~wgg   91 (462)
T KOG3834|consen   14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANS-EKVKLTVYNSKTQEVRIVEIVPSNNWGG   91 (462)
T ss_pred             ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcc-cceEEEEEecccceeEEEEecccccccc
Confidence            456778889999999999965 6799999999999874 446677776654 449999875  4456777777655444 


Q ss_pred             --cceeec----cCc------EEEEccCCHHHHcCCC-CCCEEEEE-cCeecCCCChHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257         444 --FGFHFN----KGQ------IVSLVKDSSAARNGLL-VNHNILEV-NGANVVGLKDKELLEAME-KGGSVLTLTLIPTS  508 (530)
Q Consensus       444 --LGfs~~----~Gv------V~sVv~gSpAarAGLr-~GDrILeV-NGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~  508 (530)
                        ||++++    .|.      |.+|.++++|+++||+ -+|.|+.+ |.+ ...  .+++..+|+ ..++.+.|.|....
T Consensus        92 qllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~-~~~--~eDl~~lIeshe~kpLklyVYN~D  168 (462)
T KOG3834|consen   92 QLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV-MHE--EEDLFTLIESHEGKPLKLYVYNHD  168 (462)
T ss_pred             cccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh-ccc--hHHHHHHHHhccCCCcceeEeecC
Confidence              787764    221      8899999999999999 68999988 443 222  244555554 66777888775443

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=98.36  E-value=1.1e-06  Score=95.96  Aligned_cols=135  Identities=20%  Similarity=0.191  Sum_probs=95.6

Q ss_pred             CchhhhcC----------ccchHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceE
Q psy9257         281 SLDNYMGL----------EVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIREL  350 (530)
Q Consensus       281 ~LddyMGL----------~l~ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V  350 (530)
                      ||||+|.-          +.++|++++.++.-.+. .....+.....++++...+-.+..     .|+.+-         
T Consensus       380 SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~-dl~~f~~~~i~~~~~~~l~~~l~~-----~gL~~~---------  444 (558)
T COG3975         380 SLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGL-DLATFFDEYIEGTEPPPLNPLLER-----FGLTFT---------  444 (558)
T ss_pred             cHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccc-cHHHHHHHHhhcCCCCChhhhhhh-----cceEEE---------
Confidence            79999975          67788888776643332 233334444566666666655555     444431         


Q ss_pred             EEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCc
Q psy9257         351 VLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL  430 (530)
Q Consensus       351 ~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~  430 (530)
                       -...+..+||+.+...+.+.+|..|.++|||.+|||..||.|++|||..-         ++.+...++.|.+++.|+++
T Consensus       445 -~~~~~~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~---------~l~~~~~~d~i~v~~~~~~~  514 (558)
T COG3975         445 -PKPREAYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGISD---------QLDRYKVNDKIQVHVFREGR  514 (558)
T ss_pred             -ecCCCCcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCccc---------cccccccccceEEEEccCCc
Confidence             11123568999999888899999999999999999999999999999911         12223456889999999888


Q ss_pred             eeeEEeccCC
Q psy9257         431 ERTVTLHRDS  440 (530)
Q Consensus       431 e~tVtL~kd~  440 (530)
                      -+++.++...
T Consensus       515 L~e~~v~~~~  524 (558)
T COG3975         515 LREFLVKLGG  524 (558)
T ss_pred             eEEeecccCC
Confidence            8877665543

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=98.33  E-value=8.7e-06  Score=75.57  Aligned_cols=105  Identities=26%  Similarity=0.389  Sum_probs=71.1

Q ss_pred             cccceEEEec----cCCCeeEEEEEec------CCcEEEEEeccCCHhhhcCCCC-CCEEEEECCEEcCCcCHHHHHHHH
Q psy9257         345 NGIRELVLCK----DASGLIGLRVCAI------NEGVFVCLVERGSPASLVGLRF-GDQILSINGETVAGYNMKQVHKIL  413 (530)
Q Consensus       345 ~~Vr~V~L~K----~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAGLq~-GDqILaING~~V~g~s~~~v~~LL  413 (530)
                      ...|+|.+.-    +..+.||++++-.      ..++-|..|.+||||++|||++ .|.|+.+|+..+.+.++  +.+++
T Consensus         9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~--l~~~v   86 (138)
T PF04495_consen    9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDD--LFELV   86 (138)
T ss_dssp             SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCH--HHHHH
T ss_pred             CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHH--HHHHH
Confidence            3445555521    3356789888852      3678899999999999999997 79999999999887544  77788


Q ss_pred             HhCCCCeEEEEEec--CCceeeEEeccC----CCCccceeeccC
Q psy9257         414 KAAPVNNIRVVIRD--RPLERTVTLHRD----SSGHFGFHFNKG  451 (530)
Q Consensus       414 k~a~G~~VtLtVrR--~~~e~tVtL~kd----~~g~LGfs~~~G  451 (530)
                      +...+..+.|.|.+  ....|+|+|...    ..+.||+.+..|
T Consensus        87 ~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlLGc~ig~G  130 (138)
T PF04495_consen   87 EANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLLGCHIGYG  130 (138)
T ss_dssp             HHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSSSEEEE-S
T ss_pred             HHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeeeeEEecce
Confidence            88888899999975  455678888654    467799988655

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=98.32  E-value=3.2e-06  Score=90.49  Aligned_cols=87  Identities=22%  Similarity=0.377  Sum_probs=67.8

Q ss_pred             CeeEEEEEecCCcEEEEEec--------cCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         358 GLIGLRVCAINEGVFVCLVE--------RGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       358 G~LG~~V~~~~~GV~Vs~V~--------pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      ..+|+.+.  .+||+|....        .+++|+++||+.||+|++|||+.+.+|.+  +.++++...+..+.|+|+|++
T Consensus        96 ~~iGI~l~--t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~D--L~~iL~~~~g~~V~LtV~R~G  171 (402)
T TIGR02860        96 QSIGVKLN--TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDD--LANLINKAGGEKLTLTIERGG  171 (402)
T ss_pred             EEEEEEEe--cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCeEEEEEEECC
Confidence            34677765  6899987653        25899999999999999999999999866  678887777889999999988


Q ss_pred             ceeeEEecc-----CCCCccceee
Q psy9257         430 LERTVTLHR-----DSSGHFGFHF  448 (530)
Q Consensus       430 ~e~tVtL~k-----d~~g~LGfs~  448 (530)
                      +..++.+..     +....+|+.+
T Consensus       172 e~~tv~V~Pv~~~~d~~ykLGl~V  195 (402)
T TIGR02860       172 KIIETVIKPVKDKEEGRYRIGLYI  195 (402)
T ss_pred             EEEEEEEEEeeeCCCCCEEEEEEE
Confidence            887777652     3334567654

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3550|consensus

Probab=98.30  E-value=2e-06  Score=81.11  Aligned_cols=79  Identities=30%  Similarity=0.464  Sum_probs=65.8

Q ss_pred             ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      |.|.+-|- ..+|||.+.++.   ..++|+++.+|+.|++-| |+.||++++|||..|.+-.++++..+|+.+. ..|.|
T Consensus        92 rvvelpkt-deglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~-gsvkl  169 (207)
T KOG3550|consen   92 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV-GSVKL  169 (207)
T ss_pred             ceeecCcc-ccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc-CcEEE
Confidence            34444454 455999998754   679999999999999977 9999999999999999999999999998876 45888


Q ss_pred             EEecC
Q psy9257         424 VIRDR  428 (530)
Q Consensus       424 tVrR~  428 (530)
                      +|+-.
T Consensus       170 vvryt  174 (207)
T KOG3550|consen  170 VVRYT  174 (207)
T ss_pred             EEecC
Confidence            88753

>KOG3550|consensus

Probab=98.28  E-value=1.6e-06  Score=81.75  Aligned_cols=87  Identities=25%  Similarity=0.431  Sum_probs=71.6

Q ss_pred             ceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      ..+.+.|.|...+ |||.+-+|+       |..|.+|+.|++.| |+.||++++|||++|.+-.++..+.+|+.+-+.++
T Consensus        90 hprvvelpktdeg-lgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk  168 (207)
T KOG3550|consen   90 HPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK  168 (207)
T ss_pred             CCceeecCccccc-cceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence            3456777776655 999998885       99999999999986 99999999999999999999999999999999999


Q ss_pred             EEEEeC-cchhhhhhcc
Q psy9257         502 LTLIPT-SMYQHMMKKM  517 (530)
Q Consensus       502 LtVip~-~~~e~m~kkL  517 (530)
                      |+|.-. +..+.|..+.
T Consensus       169 lvvrytpkvleeme~rf  185 (207)
T KOG3550|consen  169 LVVRYTPKVLEEMEARF  185 (207)
T ss_pred             EEEecChHHHHHHHHHH
Confidence            998643 3344454443

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.27  E-value=2.1e-06  Score=92.62  Aligned_cols=78  Identities=22%  Similarity=0.373  Sum_probs=63.3

Q ss_pred             eEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccC
Q psy9257         360 IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD  439 (530)
Q Consensus       360 LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd  439 (530)
                      +|++......+++|..|.++|+|+++||+.||+|++|||+.+.+|.+  +.+.++...++.+.++|.|+++.+++++..+
T Consensus       212 lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~  289 (449)
T PRK10779        212 LGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQT--FVTLVRDNPGKPLALEIERQGSPLSLTLTPD  289 (449)
T ss_pred             ccccccCCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCCCCEEEEEEEECCEEEEEEEEee
Confidence            56543322346899999999999999999999999999999998766  6677777677889999999988877776543

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.26  E-value=3.6e-06  Score=90.00  Aligned_cols=76  Identities=34%  Similarity=0.454  Sum_probs=62.7

Q ss_pred             CeeEEEEEec-------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEE
Q psy9257         358 GLIGLRVCAI-------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRV  423 (530)
Q Consensus       358 G~LG~~V~~~-------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtL  423 (530)
                      .++|+.+...             ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +.++++.. .++.+.|
T Consensus       338 ~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d--~~~~l~~~~~g~~v~l  415 (428)
T TIGR02037       338 PFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAE--LRKVLDRAKKGGRVAL  415 (428)
T ss_pred             cccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEE
Confidence            4678887741             168999999999999999999999999999999998755  67777653 5788999


Q ss_pred             EEecCCceeeEE
Q psy9257         424 VIRDRPLERTVT  435 (530)
Q Consensus       424 tVrR~~~e~tVt  435 (530)
                      +|.|+++.+.+.
T Consensus       416 ~v~R~g~~~~~~  427 (428)
T TIGR02037       416 LILRGGATIFVT  427 (428)
T ss_pred             EEEECCEEEEEE
Confidence            999988776654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG3551|consensus

Probab=98.22  E-value=1.2e-06  Score=92.48  Aligned_cols=76  Identities=26%  Similarity=0.493  Sum_probs=69.1

Q ss_pred             eeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ++.|++.|...+.||+++++|.       |..|.+|-.|++.+ |..||.|++|||.++.+.++++.++.|||.|++|.|
T Consensus        85 ~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~l  164 (506)
T KOG3551|consen   85 ERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLL  164 (506)
T ss_pred             cceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeee
Confidence            4667777888888999999885       88999999999998 999999999999999999999999999999999999


Q ss_pred             EEEe
Q psy9257         503 TLIP  506 (530)
Q Consensus       503 tVip  506 (530)
                      .|.-
T Consensus       165 evKy  168 (506)
T KOG3551|consen  165 EVKY  168 (506)
T ss_pred             eeee
Confidence            8853

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.21  E-value=5.9e-06  Score=67.97  Aligned_cols=65  Identities=26%  Similarity=0.449  Sum_probs=53.7

Q ss_pred             ccceeecc---C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeC
Q psy9257         443 HFGFHFNK---G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPT  507 (530)
Q Consensus       443 ~LGfs~~~---G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~  507 (530)
                      .||+.+..   + .|..|.++++|+++||+.||+|++|||+.+.++...++...++. .+..+.+++.+.
T Consensus         3 ~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           3 GIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             EEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            36666642   2 28899999999999999999999999999999977788887764 578899999876

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3553|consensus

Probab=98.17  E-value=2.4e-06  Score=75.67  Aligned_cols=68  Identities=28%  Similarity=0.542  Sum_probs=55.8

Q ss_pred             eeEEEEEec-------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         359 LIGLRVCAI-------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       359 ~LG~~V~~~-------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      .+||.+.++             +.|++|.+|.+||||+.|||+.+|.|+++||-+..-++++++.+.+++.  ..+.+.|
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~--~vl~mLV  113 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE--EVLRMLV  113 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh--HHHHHHH
Confidence            367777652             3899999999999999999999999999999999999999998888663  3444555


Q ss_pred             ecC
Q psy9257         426 RDR  428 (530)
Q Consensus       426 rR~  428 (530)
                      .|.
T Consensus       114 aR~  116 (124)
T KOG3553|consen  114 ARQ  116 (124)
T ss_pred             Hhh
Confidence            553

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=98.15  E-value=2e-05  Score=68.16  Aligned_cols=76  Identities=30%  Similarity=0.451  Sum_probs=54.6

Q ss_pred             CeeEEEEEecCCcEEEEEeccC--------CHhhhcC--CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257         358 GLIGLRVCAINEGVFVCLVERG--------SPASLVG--LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD  427 (530)
Q Consensus       358 G~LG~~V~~~~~GV~Vs~V~pG--------SPAakAG--Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR  427 (530)
                      |.||..+.-.+.+..|.+|.++        ||-.+.|  ++.||.|++|||+.+..-..  ...+|....+..|.|+|.+
T Consensus         1 G~LGAd~~~~~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~--~~~lL~~~agk~V~Ltv~~   78 (88)
T PF14685_consen    1 GLLGADFSYDNGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADAN--PYRLLEGKAGKQVLLTVNR   78 (88)
T ss_dssp             -B-SEEEEEETTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-
T ss_pred             CccceEEEEcCCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCC--HHHHhcccCCCEEEEEEec
Confidence            4578888777788889999987        6777778  67999999999999987555  7888888889999999998


Q ss_pred             CC-ceeeEE
Q psy9257         428 RP-LERTVT  435 (530)
Q Consensus       428 ~~-~e~tVt  435 (530)
                      .+ ..+++.
T Consensus        79 ~~~~~R~v~   87 (88)
T PF14685_consen   79 KPGGARTVV   87 (88)
T ss_dssp             STT-EEEEE
T ss_pred             CCCCceEEE
Confidence            65 456654

>PRK10942 serine endoprotease; Provisional

Probab=98.08  E-value=1.2e-05  Score=87.70  Aligned_cols=65  Identities=29%  Similarity=0.450  Sum_probs=56.2

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEe
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL  436 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL  436 (530)
                      .|++|..|.++|+|+++||+.||+|++|||+.|.++.+  +.++++... ..+.|+|+|++..+.+.+
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~d--l~~~l~~~~-~~v~l~V~R~g~~~~v~~  472 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAE--LRKILDSKP-SVLALNIQRGDSSIYLLM  472 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence            58999999999999999999999999999999999755  677777644 789999999887766554

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.08  E-value=1.2e-05  Score=66.62  Aligned_cols=54  Identities=30%  Similarity=0.546  Sum_probs=47.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTS  508 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~  508 (530)
                      |..|.++++|+++||+.||+|++|||+.+.++  +++...+..  .++.+.+++.|..
T Consensus        14 V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991          14 IVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             EEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECC
Confidence            88999999999999999999999999999987  468777774  3788999998765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10139 serine endoprotease; Provisional

Probab=98.06  E-value=1.2e-05  Score=87.41  Aligned_cols=65  Identities=29%  Similarity=0.387  Sum_probs=56.3

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEe
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL  436 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL  436 (530)
                      .|++|..|.++|+|+++||+.||+|++|||+.+.+|.+  +.+++++.. +.+.|+|+|+++.+.+.+
T Consensus       390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~--~~~~l~~~~-~~v~l~v~R~g~~~~~~~  454 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE--MRKVLAAKP-AIIALQIVRGNESIYLLL  454 (455)
T ss_pred             CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence            58999999999999999999999999999999999866  677776654 788999999887776654

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.05  E-value=2.4e-05  Score=63.37  Aligned_cols=55  Identities=33%  Similarity=0.495  Sum_probs=47.0

Q ss_pred             cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCc
Q psy9257         452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTS  508 (530)
Q Consensus       452 vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~  508 (530)
                      .|..|.++++|+++||+.||+|++|||+++.++  +++...++. .++.+.+++.|..
T Consensus        15 ~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          15 VIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             EEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence            388999999999999999999999999999987  567777764 3678899888765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3549|consensus

Probab=98.03  E-value=1.1e-05  Score=84.45  Aligned_cols=80  Identities=24%  Similarity=0.385  Sum_probs=71.2

Q ss_pred             ccceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      .-|.|.+.+-.-|+||+.+.++.   -.|+|+++.++-.|+..| |=.||-|++|||..|....++++..+|+++ |+.|
T Consensus        54 ~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA-GdeV  132 (505)
T KOG3549|consen   54 KERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA-GDEV  132 (505)
T ss_pred             CceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc-CCEE
Confidence            34678888878889999999864   569999999999999999 788999999999999999999999999885 7889


Q ss_pred             EEEEe
Q psy9257         422 RVVIR  426 (530)
Q Consensus       422 tLtVr  426 (530)
                      +|+|.
T Consensus       133 tlTV~  137 (505)
T KOG3549|consen  133 TLTVK  137 (505)
T ss_pred             EEEeH
Confidence            99985

>KOG3551|consensus

Probab=98.01  E-value=7e-06  Score=86.78  Aligned_cols=78  Identities=24%  Similarity=0.403  Sum_probs=69.4

Q ss_pred             ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      |.|++.|-..|+|||+++++.   ..++|+.+.+|-.|++.+ |..||.|++|||+++.+.+++++++.||.+ |+.|.+
T Consensus        86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra-GkeV~l  164 (506)
T KOG3551|consen   86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA-GKEVLL  164 (506)
T ss_pred             ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh-Cceeee
Confidence            678888888888999999853   679999999999999999 999999999999999999999999999775 677777


Q ss_pred             EEe
Q psy9257         424 VIR  426 (530)
Q Consensus       424 tVr  426 (530)
                      .|+
T Consensus       165 evK  167 (506)
T KOG3551|consen  165 EVK  167 (506)
T ss_pred             eee
Confidence            764

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.94  E-value=3.1e-05  Score=81.29  Aligned_cols=56  Identities=30%  Similarity=0.547  Sum_probs=48.5

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~  510 (530)
                      |..|.++++|+++||+.||+|++|||+.+.++  +++...++  +.|+.+.|+|.|....
T Consensus       282 V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~  339 (351)
T TIGR02038       282 ITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQ  339 (351)
T ss_pred             EeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            88999999999999999999999999999988  46767665  4688999999987643

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>KOG1421|consensus

Probab=97.93  E-value=5.8e-05  Score=84.51  Aligned_cols=127  Identities=19%  Similarity=0.218  Sum_probs=92.6

Q ss_pred             Cc-EEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCc----
Q psy9257         369 EG-VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGH----  443 (530)
Q Consensus       369 ~G-V~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~----  443 (530)
                      .| ++|..|.++|+|++. |+.||.+++||+..+.++..  +.++|.+..|+.+.|+|.|.+++.++++.-+....    
T Consensus       302 tgmLvV~~vL~~gpa~k~-Le~GDillavN~t~l~df~~--l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~  378 (955)
T KOG1421|consen  302 TGMLVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDFEA--LEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPD  378 (955)
T ss_pred             ceeEEEEEeccCCchhhc-cCCCcEEEEEcceehHHHHH--HHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCc
Confidence            45 568899999999986 99999999999988877544  78888888899999999999998887764332111    


Q ss_pred             -------------------cceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEE
Q psy9257         444 -------------------FGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLT  501 (530)
Q Consensus       444 -------------------LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVt  501 (530)
                                         +++-..+|+ |.+-. ++++.+.++. |-.|.+|+++++-++  ..+.+.++  ..|..|.
T Consensus       379 R~levcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~~y-~~ii~~vanK~tPdL--daFidvlk~L~dg~rV~  454 (955)
T KOG1421|consen  379 RFLEVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGPRY-GQIIDSVANKPTPDL--DAFIDVLKELPDGARVP  454 (955)
T ss_pred             eEEEEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCCcc-eEEEEeecCCcCCCH--HHHHHHHHhccCCCeee
Confidence                               222222454 33333 6777777766 888999999999998  45777766  3444444


Q ss_pred             E
Q psy9257         502 L  502 (530)
Q Consensus       502 L  502 (530)
                      +
T Consensus       455 v  455 (955)
T KOG1421|consen  455 V  455 (955)
T ss_pred             E
Confidence            3

>KOG0609|consensus

Probab=97.92  E-value=5.2e-05  Score=83.09  Aligned_cols=85  Identities=24%  Similarity=0.386  Sum_probs=73.1

Q ss_pred             cccccceEEEeccCCCeeEEEEEecCC-cEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~~~-GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      ....+|.|.+.|..+..+|++++.... .++|+++..|+.+++.| |+.||.|++|||..+.+..-.++..+|++.. ..
T Consensus       119 ~~~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~  197 (542)
T KOG0609|consen  119 PVEAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR-GS  197 (542)
T ss_pred             ccceeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-Cc
Confidence            345677788888878889999997444 59999999999999999 8999999999999999999999999999887 66


Q ss_pred             EEEEEecC
Q psy9257         421 IRVVIRDR  428 (530)
Q Consensus       421 VtLtVrR~  428 (530)
                      |++.|...
T Consensus       198 itfkiiP~  205 (542)
T KOG0609|consen  198 ITFKIIPS  205 (542)
T ss_pred             EEEEEccc
Confidence            78877643

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.90  E-value=4.2e-05  Score=62.33  Aligned_cols=64  Identities=27%  Similarity=0.499  Sum_probs=47.8

Q ss_pred             cceeecc--C--cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         444 FGFHFNK--G--QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       444 LGfs~~~--G--vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      +|+.+..  +  .|.+|.++++|+++||+.||+|++|||+++.++.  ++...+ +.++.+.+++.+....
T Consensus         3 ~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~--~~l~~~-~~~~~v~l~v~r~g~~   70 (80)
T cd00990           3 LGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQ--DRLKEY-QAGDPVELTVFRDDRL   70 (80)
T ss_pred             ccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHH--HHHHhc-CCCCEEEEEEEECCEE
Confidence            5666642  2  3889999999999999999999999999998642  222221 3567899999876533

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.88  E-value=4.5e-05  Score=62.98  Aligned_cols=54  Identities=33%  Similarity=0.444  Sum_probs=46.6

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTS  508 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~  508 (530)
                      |..|.++++|+++||+.||+|++|||+.+.++.  ++..++..  .++.+.+++.+..
T Consensus        28 V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          28 VASVDPGSPAAKAGLKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             EEEECCCCHHHHcCCCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECC
Confidence            889999999999999999999999999999874  56666664  3788999998765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1320|consensus

Probab=97.88  E-value=2e-05  Score=85.76  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=91.4

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEEe--------cc------CCCeeEEEEE-
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLC--------KD------ASGLIGLRVC-  365 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L~--------K~------s~G~LG~~V~-  365 (530)
                      ++.++++++.++..++.-|+.++.+.+-.-..|=+-||+|+++.+.+....+.        +.      .+.++|+... 
T Consensus       297 td~ai~~~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~~p~~~~~g~~s~~  376 (473)
T KOG1320|consen  297 TDAAINPGNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPLVPVHQYIGLPSYY  376 (473)
T ss_pred             cchhhhcccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCcccccccCCceeEE
Confidence            89999988887777776666665433322223334677787754444332221        10      0123332211 


Q ss_pred             --------e--c--------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEEEe
Q psy9257         366 --------A--I--------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIR  426 (530)
Q Consensus       366 --------~--~--------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLtVr  426 (530)
                              .  .        ..+++|..|.+|+++...|+..||+|++|||+.|.+..+  +..+++.+. ++.|.+..+
T Consensus       377 i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~  454 (473)
T KOG1320|consen  377 IFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDR  454 (473)
T ss_pred             EecceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEe
Confidence                    1  1        147899999999999999999999999999999999877  777776654 357777778


Q ss_pred             cCCceeeEEeccC
Q psy9257         427 DRPLERTVTLHRD  439 (530)
Q Consensus       427 R~~~e~tVtL~kd  439 (530)
                      |..++.++.+.+.
T Consensus       455 ~~~e~~tl~Il~~  467 (473)
T KOG1320|consen  455 RSAEDATLEILPE  467 (473)
T ss_pred             cCccceeEEeccc
Confidence            8777777776544

>KOG3651|consensus

Probab=97.83  E-value=3.5e-05  Score=79.54  Aligned_cols=77  Identities=27%  Similarity=0.486  Sum_probs=67.0

Q ss_pred             eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .|.+.|+..+-+|+++.++.   ..++|..|..++||++.| ++.||.|++|||..|.+.+...+.++++... +.|+++
T Consensus         7 ~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~-~eV~Ih   85 (429)
T KOG3651|consen    7 TVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL-NEVKIH   85 (429)
T ss_pred             cEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc-cceEEE
Confidence            57788999999999998765   568899999999999999 9999999999999999999888888887654 567777


Q ss_pred             Ee
Q psy9257         425 IR  426 (530)
Q Consensus       425 Vr  426 (530)
                      +.
T Consensus        86 yN   87 (429)
T KOG3651|consen   86 YN   87 (429)
T ss_pred             eh
Confidence            64

>KOG3606|consensus

Probab=97.80  E-value=7.1e-05  Score=76.38  Aligned_cols=89  Identities=25%  Similarity=0.407  Sum_probs=72.8

Q ss_pred             echhcccccceEEEec-cCCCeeEEEEEecC------------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCc
Q psy9257         339 KKAYVTNGIRELVLCK-DASGLIGLRVCAIN------------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY  404 (530)
Q Consensus       339 gfAi~~~~Vr~V~L~K-~s~G~LG~~V~~~~------------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~  404 (530)
                      ...++-..-|.|+++| +....|||-++.+.            .|+||++..+|+-|+..| |-..|.|++|||..|.+.
T Consensus       151 DVDivPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGK  230 (358)
T KOG3606|consen  151 DVDIVPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGK  230 (358)
T ss_pred             eecccchhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccc
Confidence            3444556667888876 66677999988743            689999999999999999 788999999999999999


Q ss_pred             CHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         405 NMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       405 s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      +.+++..++-.. ...+.++|+-.
T Consensus       231 TLDQVTDMMvAN-shNLIiTVkPA  253 (358)
T KOG3606|consen  231 TLDQVTDMMVAN-SHNLIITVKPA  253 (358)
T ss_pred             cHHHHHHHHhhc-ccceEEEeccc
Confidence            999999888554 46677887753

>PRK10898 serine endoprotease; Provisional

Probab=97.78  E-value=0.00014  Score=76.65  Aligned_cols=56  Identities=23%  Similarity=0.406  Sum_probs=47.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~  510 (530)
                      |..|.++++|+++||+.||+|++|||++|.++  +++.+.+.  +.|+.+.|++.|....
T Consensus       283 V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~  340 (353)
T PRK10898        283 VNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ  340 (353)
T ss_pred             EEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            88999999999999999999999999999887  35655554  5678899999987643

>KOG1892|consensus

Probab=97.75  E-value=6.2e-05  Score=86.46  Aligned_cols=80  Identities=26%  Similarity=0.456  Sum_probs=66.8

Q ss_pred             cceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      +..|.|.|.  +++|+.+...      ..||+|..|.+|++|+..| |+.||+++.|||..+-+++.+.+.+++. ..|.
T Consensus       934 i~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt-rtg~ 1010 (1629)
T KOG1892|consen  934 IITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT-RTGN 1010 (1629)
T ss_pred             eEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh-ccCC
Confidence            344555665  6699998762      3789999999999999999 9999999999999999999988888884 4578


Q ss_pred             eEEEEEecCC
Q psy9257         420 NIRVVIRDRP  429 (530)
Q Consensus       420 ~VtLtVrR~~  429 (530)
                      .|.|.|+..+
T Consensus      1011 vV~leVaKqg 1020 (1629)
T KOG1892|consen 1011 VVHLEVAKQG 1020 (1629)
T ss_pred             eEEEehhhhh
Confidence            9999997643

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.62  E-value=0.00027  Score=71.82  Aligned_cols=56  Identities=18%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~  510 (530)
                      |..+.++++|+++||+.||+|++|||+++.++  +++..++.  +.++.++|+|.|....
T Consensus       195 v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       195 LNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             EEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence            77889999999999999999999999999988  45666666  4667999999998643

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.62  E-value=0.00015  Score=59.44  Aligned_cols=54  Identities=24%  Similarity=0.377  Sum_probs=45.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~  509 (530)
                      |..|.++++|+. ||+.||+|++|||+.+.++  +++...+.  ..++.+.+++.+...
T Consensus        12 V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986          12 VTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             EEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            788999999987 8999999999999999977  46777776  357789999987653

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1892|consensus

Probab=97.62  E-value=9.4e-05  Score=85.07  Aligned_cols=78  Identities=26%  Similarity=0.457  Sum_probs=67.8

Q ss_pred             ceeeEEeccCCCCccceeec--cC-------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257         430 LERTVTLHRDSSGHFGFHFN--KG-------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS  498 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~--~G-------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~  498 (530)
                      +..+|+|+|.  +.+|+++.  .|       + |++|++|++|+..| |+.||+++.|||+.+.+++.+...+++.+.|.
T Consensus       933 ei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen  933 EIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred             ceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence            4467888888  45888874  22       2 99999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEEeCcc
Q psy9257         499 VLTLTLIPTSM  509 (530)
Q Consensus       499 tVtLtVip~~~  509 (530)
                      .|+|.|..+..
T Consensus      1011 vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1011 VVHLEVAKQGA 1021 (1629)
T ss_pred             eEEEehhhhhh
Confidence            99999987653

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.59  E-value=0.0001  Score=79.21  Aligned_cols=76  Identities=25%  Similarity=0.447  Sum_probs=60.2

Q ss_pred             Cccceeec--c-C--cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCcchhhhhh
Q psy9257         442 GHFGFHFN--K-G--QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTSMYQHMMK  515 (530)
Q Consensus       442 g~LGfs~~--~-G--vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~~~e~m~k  515 (530)
                      +.+|..+.  + +  +|.++.+++||+++|+++||+|+.|||+++.++..+++...|+ +.|..|+|++.|....+.+..
T Consensus       100 ~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v  179 (406)
T COG0793         100 GGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTV  179 (406)
T ss_pred             cceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEE
Confidence            34666664  2 3  2889999999999999999999999999999999777877776 788999999999743433433


Q ss_pred             cc
Q psy9257         516 KM  517 (530)
Q Consensus       516 kL  517 (530)
                      ++
T Consensus       180 ~l  181 (406)
T COG0793         180 TL  181 (406)
T ss_pred             EE
Confidence            33

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.56  E-value=0.00015  Score=75.23  Aligned_cols=66  Identities=24%  Similarity=0.474  Sum_probs=53.7

Q ss_pred             ccceeecc--C--cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257         443 HFGFHFNK--G--QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTS  508 (530)
Q Consensus       443 ~LGfs~~~--G--vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~  508 (530)
                      .+|+.+..  +  .|..|.++++|+++||+.||+|++|||+++.++..+++...+. ..|..+.|++.|..
T Consensus        52 ~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        52 GIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             EEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            46777642  2  3889999999999999999999999999999987566766665 46788999988764

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG3651|consensus

Probab=97.45  E-value=0.00031  Score=72.73  Aligned_cols=74  Identities=24%  Similarity=0.424  Sum_probs=66.6

Q ss_pred             eeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      .-+|+|.|+..+-+|+++-+|.       |..|..++||++.| ++.||.|+.|||..|.+.+.-++.++|+..-+.|++
T Consensus         5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I   84 (429)
T KOG3651|consen    5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI   84 (429)
T ss_pred             cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence            3467888999999999997774       99999999999999 999999999999999999989999999988888887


Q ss_pred             EE
Q psy9257         503 TL  504 (530)
Q Consensus       503 tV  504 (530)
                      .+
T Consensus        85 hy   86 (429)
T KOG3651|consen   85 HY   86 (429)
T ss_pred             Ee
Confidence            76

>KOG3571|consensus

Probab=97.42  E-value=0.00028  Score=76.97  Aligned_cols=79  Identities=20%  Similarity=0.426  Sum_probs=65.4

Q ss_pred             eEEEeccCCCeeEEEEEe-----cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC--Ce
Q psy9257         349 ELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV--NN  420 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~-----~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G--~~  420 (530)
                      +|.|--.....|||++.+     ++.||+|..+.++++-++.| +.+||.||+||.....+++.++++++|+....  ..
T Consensus       252 TV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gP  331 (626)
T KOG3571|consen  252 TVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGP  331 (626)
T ss_pred             EEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCC
Confidence            344433445679999998     77999999999999988888 99999999999999999999999999987543  34


Q ss_pred             EEEEEec
Q psy9257         421 IRVVIRD  427 (530)
Q Consensus       421 VtLtVrR  427 (530)
                      ++|+|..
T Consensus       332 i~ltvAk  338 (626)
T KOG3571|consen  332 IKLTVAK  338 (626)
T ss_pred             eEEEEee
Confidence            7777653

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.42  E-value=0.00051  Score=73.20  Aligned_cols=56  Identities=29%  Similarity=0.391  Sum_probs=48.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTS  508 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~  508 (530)
                      |..|.++|+|+++||+.||+|++|||++|.++...++...++ ..+..+.|+|.+..
T Consensus       106 V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049        106 VVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             EEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            889999999999999999999999999999987777777776 46778888887654

>KOG1421|consensus

Probab=97.41  E-value=0.0011  Score=74.77  Aligned_cols=111  Identities=23%  Similarity=0.299  Sum_probs=83.0

Q ss_pred             EEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCC---CCc----
Q psy9257         371 VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS---SGH----  443 (530)
Q Consensus       371 V~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~---~g~----  443 (530)
                      .+|+.|.+.-.  +. |..||+|+++||+-|..+++  ++.+.      .+.+.|.|++.++++++..-.   ...    
T Consensus       773 ~~ishv~~~~~--ki-l~~gdiilsvngk~itr~~d--l~d~~------eid~~ilrdg~~~~ikipt~p~~et~r~vi~  841 (955)
T KOG1421|consen  773 YVISHVRPLLH--KI-LGVGDIILSVNGKMITRLSD--LHDFE------EIDAVILRDGIEMEIKIPTYPEYETSRAVIW  841 (955)
T ss_pred             EEEEeeccCcc--cc-cccccEEEEecCeEEeeehh--hhhhh------hhheeeeecCcEEEEEeccccccccceEEEE
Confidence            56778887653  33 89999999999999999887  44422      578888999988888875322   111    


Q ss_pred             cceeec--------------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         444 FGFHFN--------------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       444 LGfs~~--------------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      .|-.++              .|+ |++...+|||.+ +|+..+.|..|||..+.++  +++...+++
T Consensus       842 ~gailq~ph~av~~q~edlp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~l--ddf~~~~~~  905 (955)
T KOG1421|consen  842 MGAILQPPHSAVFEQVEDLPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNTL--DDFYHMLLE  905 (955)
T ss_pred             EeccccCchHHHHHHHhccCCceEEeecccCChhHh-hcchheeEEEecccccCcH--HHHHHHHhh
Confidence            232222              344 888899999999 9999999999999999888  467766653

>KOG3552|consensus

Probab=97.39  E-value=0.00021  Score=82.10  Aligned_cols=75  Identities=29%  Similarity=0.495  Sum_probs=61.6

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      .|.|.+.++  ..|||.+..+ ..|+|..|.+||++.  | |++||+|++|||++|.+...+.+.++++.+. +.|.|+|
T Consensus        56 pr~vq~~r~--~~lGFgfvag-rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV  129 (1298)
T KOG3552|consen   56 PRQVQLQRN--ASLGFGFVAG-RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTV  129 (1298)
T ss_pred             chhhhhhcc--ccccceeecC-CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEE
Confidence            455554443  4467777755 889999999999987  5 9999999999999999999999999998864 6788888


Q ss_pred             ec
Q psy9257         426 RD  427 (530)
Q Consensus       426 rR  427 (530)
                      .+
T Consensus       130 ~q  131 (1298)
T KOG3552|consen  130 CQ  131 (1298)
T ss_pred             ec
Confidence            76

>KOG3938|consensus

Probab=97.37  E-value=0.00046  Score=70.45  Aligned_cols=93  Identities=26%  Similarity=0.431  Sum_probs=75.2

Q ss_pred             CCCcccee---chhcccccceEEEeccCCCeeEEEEEecCCc-EEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCH
Q psy9257         332 SSSGSGLK---KAYVTNGIRELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM  406 (530)
Q Consensus       332 SG~svGIg---fAi~~~~Vr~V~L~K~s~G~LG~~V~~~~~G-V~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~  406 (530)
                      =|+.+|+.   ||-++-..++|.+.|..+. ||+++.....| .||.++.+||.-.+.- ++.||.|-+|||+.+.++.+
T Consensus       109 lgGqigleDfiFAHvkGq~kEv~v~Kseda-lGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RH  187 (334)
T KOG3938|consen  109 LGGQIGLEDFIFAHVKGQAKEVEVVKSEDA-LGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRH  187 (334)
T ss_pred             hcCccChhhhhhhhhcCcceeEEEEecccc-cceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhH
Confidence            35556664   6778888889999998766 99999975544 7999999999988766 89999999999999999999


Q ss_pred             HHHHHHHHhCC-CCeEEEEE
Q psy9257         407 KQVHKILKAAP-VNNIRVVI  425 (530)
Q Consensus       407 ~~v~~LLk~a~-G~~VtLtV  425 (530)
                      -++.++|+... +...+|.+
T Consensus       188 YeVArmLKel~rge~ftlrL  207 (334)
T KOG3938|consen  188 YEVARMLKELPRGETFTLRL  207 (334)
T ss_pred             HHHHHHHHhcccCCeeEEEe
Confidence            99999998754 34444443

>KOG3129|consensus

Probab=97.36  E-value=0.00074  Score=66.91  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=61.3

Q ss_pred             cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCH-HHHHHHHHhCCCCeEEEEEecCCceeeEEeccC---CCCccc
Q psy9257         370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM-KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD---SSGHFG  445 (530)
Q Consensus       370 GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~-~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd---~~g~LG  445 (530)
                      =++|..|.++|||+++||+.||.|+++....-.++.. ..+..+.+...+..+.++|.|.++...+.|.+.   ..|.||
T Consensus       140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLG  219 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLG  219 (231)
T ss_pred             eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCccee
Confidence            3789999999999999999999999998877766653 223344455567889999999999999888764   345566


Q ss_pred             eee
Q psy9257         446 FHF  448 (530)
Q Consensus       446 fs~  448 (530)
                      +.+
T Consensus       220 C~~  222 (231)
T KOG3129|consen  220 CNY  222 (231)
T ss_pred             eee
Confidence            663

>KOG3542|consensus

Probab=97.33  E-value=0.0002  Score=80.19  Aligned_cols=84  Identities=27%  Similarity=0.452  Sum_probs=68.9

Q ss_pred             cccccceEEEec-cCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         343 VTNGIRELVLCK-DASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       343 ~~~~Vr~V~L~K-~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      .+..-|+|++.| .....|-|++.++.   .|+||..|.+|+.|++.||+.||+|++|||+....++..++.++|++.  
T Consensus       532 aKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn--  609 (1283)
T KOG3542|consen  532 AKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN--  609 (1283)
T ss_pred             hcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC--
Confidence            355567888877 44456888887653   689999999999999999999999999999999999999999999764  


Q ss_pred             CeEEEEEecC
Q psy9257         419 NNIRVVIRDR  428 (530)
Q Consensus       419 ~~VtLtVrR~  428 (530)
                      ..++|+|..+
T Consensus       610 thLtltvKtN  619 (1283)
T KOG3542|consen  610 THLTLTVKTN  619 (1283)
T ss_pred             ceEEEEEecc
Confidence            4566666643

>KOG1320|consensus

Probab=97.28  E-value=0.0019  Score=70.72  Aligned_cols=135  Identities=19%  Similarity=0.278  Sum_probs=84.2

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHH-----HHH-HhCCCCeEEEEEecCCceeeEEeccCCC-
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVH-----KIL-KAAPVNNIRVVIRDRPLERTVTLHRDSS-  441 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~-----~LL-k~a~G~~VtLtVrR~~~e~tVtL~kd~~-  441 (530)
                      .|+.+..+.+-+.|.+. ++.||.|+.+||+.|.-... ...     ..+ .+.+++.|.+.|.|.. ++.+.+..... 
T Consensus       287 ~g~~i~~~~qtd~ai~~-~nsg~~ll~~DG~~IgVn~~-~~~ri~~~~~iSf~~p~d~vl~~v~r~~-e~~~~lr~~~~~  363 (473)
T KOG1320|consen  287 TGVLISKINQTDAAINP-GNSGGPLLNLDGEVIGVNTR-KVTRIGFSHGISFKIPIDTVLVIVLRLG-EFQISLRPVKPL  363 (473)
T ss_pred             cceeeeeecccchhhhc-ccCCCcEEEecCcEeeeeee-eeEEeeccccceeccCchHhhhhhhhhh-hhceeeccccCc
Confidence            45888888887777664 88999999999999841111 011     001 1223444555555543 33333321100 


Q ss_pred             ----Ccc---------ceee---------cc----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH
Q psy9257         442 ----GHF---------GFHF---------NK----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME  494 (530)
Q Consensus       442 ----g~L---------Gfs~---------~~----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk  494 (530)
                          ..+         ||.+         ..    ++ |..|.+++++...+++.||+|+.|||+.|.+++  ++..+++
T Consensus       364 ~p~~~~~g~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~--~l~~~i~  441 (473)
T KOG1320|consen  364 VPVHQYIGLPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLK--HLYELIE  441 (473)
T ss_pred             ccccccCCceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechH--HHHHHHH
Confidence                001         1111         11    22 668999999999999999999999999999994  6888888


Q ss_pred             hCCC--EEEEEEEeCc
Q psy9257         495 KGGS--VLTLTLIPTS  508 (530)
Q Consensus       495 rsG~--tVtLtVip~~  508 (530)
                      .+-.  .+.+...+..
T Consensus       442 ~~~~~~~v~vl~~~~~  457 (473)
T KOG1320|consen  442 ECSTEDKVAVLDRRSA  457 (473)
T ss_pred             hcCcCceEEEEEecCc
Confidence            6543  5555555443

>KOG3553|consensus

Probab=97.25  E-value=0.00036  Score=62.16  Aligned_cols=43  Identities=23%  Similarity=0.398  Sum_probs=39.1

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      |++|..||||+.+||+.+|.|++|||.+..-++++..+..|++
T Consensus        63 vT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   63 VTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             EEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            9999999999999999999999999999888888777777765

>KOG3542|consensus

Probab=97.05  E-value=0.0018  Score=72.94  Aligned_cols=79  Identities=30%  Similarity=0.428  Sum_probs=59.8

Q ss_pred             CCceeeEEecc-CCCCccceeeccCc-------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCE
Q psy9257         428 RPLERTVTLHR-DSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSV  499 (530)
Q Consensus       428 ~~~e~tVtL~k-d~~g~LGfs~~~Gv-------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~t  499 (530)
                      +.+.+.+.|.+ .....+-|.+.+|.       |.+|.+|+.|++.||+.||+|++|||++..+++.+...++|+ +...
T Consensus       533 KAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLr-nnth  611 (1283)
T KOG3542|consen  533 KAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILR-NNTH  611 (1283)
T ss_pred             cccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhc-CCce
Confidence            34556677766 33344666665542       889999999999999999999999999999998666666554 4578


Q ss_pred             EEEEEEeC
Q psy9257         500 LTLTLIPT  507 (530)
Q Consensus       500 VtLtVip~  507 (530)
                      ++|+|..+
T Consensus       612 LtltvKtN  619 (1283)
T KOG3542|consen  612 LTLTVKTN  619 (1283)
T ss_pred             EEEEEecc
Confidence            88888655

>KOG3552|consensus

Probab=96.91  E-value=0.001  Score=76.76  Aligned_cols=74  Identities=24%  Similarity=0.402  Sum_probs=61.0

Q ss_pred             eeeEEeccCCCCccceeeccCc---EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKGQ---IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~Gv---V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      .+.|.+.++.  .|||.|..|+   |..|..||++. ..|++||+|+.|||.+|.+...+.+.++++.+...|.|+|+..
T Consensus        56 pr~vq~~r~~--~lGFgfvagrPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP  132 (1298)
T KOG3552|consen   56 PRQVQLQRNA--SLGFGFVAGRPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP  132 (1298)
T ss_pred             chhhhhhccc--cccceeecCCceEEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence            4555555554  3677776665   77888999886 3399999999999999999999999999999999999999875

>KOG3606|consensus

Probab=96.90  E-value=0.0017  Score=66.60  Aligned_cols=58  Identities=33%  Similarity=0.444  Sum_probs=52.5

Q ss_pred             EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      |..+++|+-|+-.| |-+.|.|++|||..|.+.+-+++.+++......+.++|.|-..+
T Consensus       198 ISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR  256 (358)
T KOG3606|consen  198 ISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR  256 (358)
T ss_pred             EEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence            88999999999999 56899999999999999999999999998888899999876654

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=96.88  E-value=0.0082  Score=55.93  Aligned_cols=79  Identities=22%  Similarity=0.364  Sum_probs=52.9

Q ss_pred             CCceeeEEecc----CCCCccceeec----c-----C-cEEEEccCCHHHHcCCCC-CCEEEEEcCeecCCCChHHHHHH
Q psy9257         428 RPLERTVTLHR----DSSGHFGFHFN----K-----G-QIVSLVKDSSAARNGLLV-NHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       428 ~~~e~tVtL~k----d~~g~LGfs~~----~-----G-vV~sVv~gSpAarAGLr~-GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      ....|++.+..    +..+.||++++    .     + .|..|.++|||+++||++ .|.|+.+++..+.+.  +++...
T Consensus         8 ~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~~l~~~   85 (138)
T PF04495_consen    8 GQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--DDLFEL   85 (138)
T ss_dssp             TSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--CHHHHH
T ss_pred             CCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--HHHHHH
Confidence            34556666644    23577899875    1     1 299999999999999998 699999999888865  567777


Q ss_pred             HH-hCCCEEEEEEEeCc
Q psy9257         493 ME-KGGSVLTLTLIPTS  508 (530)
Q Consensus       493 Lk-rsG~tVtLtVip~~  508 (530)
                      ++ ..++.+.|.|....
T Consensus        86 v~~~~~~~l~L~Vyns~  102 (138)
T PF04495_consen   86 VEANENKPLQLYVYNSK  102 (138)
T ss_dssp             HHHTTTS-EEEEEEETT
T ss_pred             HHHcCCCcEEEEEEECC
Confidence            76 56788999987654

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG0609|consensus

Probab=96.86  E-value=0.0022  Score=70.67  Aligned_cols=78  Identities=27%  Similarity=0.447  Sum_probs=65.8

Q ss_pred             eeEEeccCCCCccceeecc--C---cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNK--G---QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~--G---vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      +.+.+.|+....+|..++.  +   .|..|..|+.+++.| |..||.|++|||+.|.+..-+++..+++.+.+.+++.|+
T Consensus       124 riv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkii  203 (542)
T KOG0609|consen  124 RIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKII  203 (542)
T ss_pred             EEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEc
Confidence            3455666666677777763  2   288999999999999 889999999999999999999999999988899999999


Q ss_pred             eCcc
Q psy9257         506 PTSM  509 (530)
Q Consensus       506 p~~~  509 (530)
                      +...
T Consensus       204 P~~~  207 (542)
T KOG0609|consen  204 PSYR  207 (542)
T ss_pred             cccc
Confidence            8854

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=96.86  E-value=0.0055  Score=63.19  Aligned_cols=53  Identities=9%  Similarity=0.301  Sum_probs=42.4

Q ss_pred             hhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEEe
Q psy9257         382 ASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVTL  436 (530)
Q Consensus       382 AakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVtL  436 (530)
                      -.++|||.||++++|||..+.+...  +.++++.. ....++|+|.|+++..++.+
T Consensus       220 F~~~GLq~GDva~sING~dL~D~~q--a~~l~~~L~~~tei~ltVeRdGq~~~i~i  273 (276)
T PRK09681        220 FDASGFKEGDIAIALNQQDFTDPRA--MIALMRQLPSMDSIQLTVLRKGARHDISI  273 (276)
T ss_pred             HHHcCCCCCCEEEEeCCeeCCCHHH--HHHHHHHhccCCeEEEEEEECCEEEEEEE
Confidence            3668999999999999999987544  55555533 34789999999999888765

>KOG3938|consensus

Probab=96.81  E-value=0.0018  Score=66.30  Aligned_cols=120  Identities=19%  Similarity=0.310  Sum_probs=87.3

Q ss_pred             CHhhhcCCCCCCEEE-EECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCccceeec-cCc----E
Q psy9257         380 SPASLVGLRFGDQIL-SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFN-KGQ----I  453 (530)
Q Consensus       380 SPAakAGLq~GDqIL-aING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~~-~Gv----V  453 (530)
                      +.|+.-++..-|+|. .+|...+.      +.++|...-+-.=.+...++++..+|.+.|+... ||+++. +|.    |
T Consensus        81 kIAe~F~Is~~dIlfcTlNshKvD------M~~llgGqigleDfiFAHvkGq~kEv~v~Kseda-lGlTITDNG~GyAFI  153 (334)
T KOG3938|consen   81 KIAEAFDISPDDILFCTLNSHKVD------MKRLLGGQIGLEDFIFAHVKGQAKEVEVVKSEDA-LGLTITDNGAGYAFI  153 (334)
T ss_pred             HHHHHhcCCccceEEEecCCCccc------HHHHhcCccChhhhhhhhhcCcceeEEEEecccc-cceEEeeCCcceeee
Confidence            556666788888874 45666652      3555533222111222334667778888887655 888886 333    9


Q ss_pred             EEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEe
Q psy9257         454 VSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIP  506 (530)
Q Consensus       454 ~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip  506 (530)
                      +.|..||.-++.. +.+||.|-+|||+++.++.+=+|.++|+  +.|++.+|.++-
T Consensus       154 KrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLie  209 (334)
T KOG3938|consen  154 KRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIE  209 (334)
T ss_pred             EeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeec
Confidence            9999999988875 8899999999999999999999999998  567888887753

>PRK11186 carboxy-terminal protease; Provisional

Probab=96.79  E-value=0.0027  Score=72.45  Aligned_cols=65  Identities=28%  Similarity=0.476  Sum_probs=51.9

Q ss_pred             ccceeec--cC--cEEEEccCCHHHHc-CCCCCCEEEEEc--C---eecCCCChHHHHHHHH-hCCCEEEEEEEeC
Q psy9257         443 HFGFHFN--KG--QIVSLVKDSSAARN-GLLVNHNILEVN--G---ANVVGLKDKELLEAME-KGGSVLTLTLIPT  507 (530)
Q Consensus       443 ~LGfs~~--~G--vV~sVv~gSpAarA-GLr~GDrILeVN--G---q~V~gls~eeVv~iLk-rsG~tVtLtVip~  507 (530)
                      .+|..+.  ++  +|.+|.+||||+++ ||+.||+|++||  |   +.+.+|..+++..+|+ ..|..|+|+|.+.
T Consensus       245 GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        245 GIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             EEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            3666654  23  38899999999998 899999999999  4   3566777778888887 5788999999873

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.0086  Score=62.35  Aligned_cols=68  Identities=25%  Similarity=0.458  Sum_probs=53.3

Q ss_pred             cceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchhhh
Q psy9257         444 FGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQHM  513 (530)
Q Consensus       444 LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e~m  513 (530)
                      +|+....|. |..+.++++|+++|++.||.|+++||+.+.+..  ++...+.  +.|..+.+++.|......+
T Consensus       264 ~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~--~l~~~v~~~~~g~~v~~~~~r~g~~~~~  334 (347)
T COG0265         264 LGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLS--DLVAAVASNRPGDEVALKLLRGGKEREL  334 (347)
T ss_pred             cCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHH--HHHHHHhccCCCCEEEEEEEECCEEEEE
Confidence            566655564 889999999999999999999999999999884  4444443  4678999999988544333

>KOG3571|consensus

Probab=96.76  E-value=0.0026  Score=69.71  Aligned_cols=77  Identities=21%  Similarity=0.318  Sum_probs=62.9

Q ss_pred             eeeEEeccCCCCccceeecc--------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh---CC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK--------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK---GG  497 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~--------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr---sG  497 (530)
                      ..+|+|.-+....||+++++        |. |.+|.++++.+..| +.+||.||+||.+++.+++.++.++.|+.   ..
T Consensus       250 IITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~  329 (626)
T KOG3571|consen  250 IITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRP  329 (626)
T ss_pred             EEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccC
Confidence            35667777777779999974        33 99999999999998 99999999999999999999999888873   33


Q ss_pred             CEEEEEEEeC
Q psy9257         498 SVLTLTLIPT  507 (530)
Q Consensus       498 ~tVtLtVip~  507 (530)
                      ..++|+|...
T Consensus       330 gPi~ltvAk~  339 (626)
T KOG3571|consen  330 GPIKLTVAKC  339 (626)
T ss_pred             CCeEEEEeec
Confidence            4578877543

>KOG4407|consensus

Probab=96.74  E-value=0.0014  Score=77.75  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=88.3

Q ss_pred             cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCccceeec
Q psy9257         370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFN  449 (530)
Q Consensus       370 GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~~  449 (530)
                      .+++..+..++++..+|+..||.|..|+|..+.+.+. +.-.+++.. ..                           .  
T Consensus        97 s~~~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~~~TS-~~~~~vk~~-eT---------------------------~--  145 (1973)
T KOG4407|consen   97 STNWPQEASSAAGSNSGSSSSVGVAGITGLEPTSPTS-LPPYQVKAM-ET---------------------------I--  145 (1973)
T ss_pred             ccccchhcccCcccccCcccccceeeecccccCCCcc-ccHHHHhhh-hh---------------------------h--
Confidence            3667778888999999999999999999999988763 444444331 11                           1  


Q ss_pred             cCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257         450 KGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       450 ~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~  509 (530)
                        .|.+|.+.++|..+.|+.||+++.||.+.+.++...+++-.+++.--++++.|.|...
T Consensus       146 --~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~  203 (1973)
T KOG4407|consen  146 --FIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKEC  203 (1973)
T ss_pred             --hhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccC
Confidence              1567889999999999999999999999999999999999999988889998887653

>KOG4371|consensus

Probab=96.71  E-value=0.0027  Score=74.13  Aligned_cols=135  Identities=23%  Similarity=0.430  Sum_probs=91.9

Q ss_pred             CeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCce------
Q psy9257         358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE------  431 (530)
Q Consensus       358 G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e------  431 (530)
                      |.||..+......+.+....-.+.--.-.|+.||.++.+||..+.+.-+..++.+++ ..++.|.|-|.|.+-.      
T Consensus      1158 ~~l~~~~a~~~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~d~~~ 1236 (1332)
T KOG4371|consen 1158 GSLGVQIASLSGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLR-GGGDRVVLGVQRPPPAYSDQHH 1236 (1332)
T ss_pred             CCCCceeccCccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHh-ccCceEEEEeecCCcccccchh
Confidence            557777765545455555543333334459999999999999998877766666664 4578899999884321      


Q ss_pred             ----------eeEEeccCCCCccceeec-----cCc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHH
Q psy9257         432 ----------RTVTLHRDSSGHFGFHFN-----KGQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAM  493 (530)
Q Consensus       432 ----------~tVtL~kd~~g~LGfs~~-----~Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iL  493 (530)
                                ..+.|.++....+|+.+.     +|. |..+..++.|.-.| +++||++...+|+++.+..-..+...+
T Consensus      1237 ~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~ 1315 (1332)
T KOG4371|consen 1237 ASSTSASAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKL 1315 (1332)
T ss_pred             hhhhcccchhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHh
Confidence                      223344555556787764     444 55666666666666 999999999999999999644443333

>KOG3605|consensus

Probab=96.68  E-value=0.003  Score=70.97  Aligned_cols=75  Identities=23%  Similarity=0.450  Sum_probs=57.5

Q ss_pred             eeEEeccCCCCccceeec-cC--------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCE
Q psy9257         432 RTVTLHRDSSGHFGFHFN-KG--------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK--GGSV  499 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~-~G--------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~t  499 (530)
                      ++|.|.|....-||+.+. .|        +|.+...+++|++.| |-.||+|+.|||..+.++.-...+-+|+.  ....
T Consensus       647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~  726 (829)
T KOG3605|consen  647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA  726 (829)
T ss_pred             ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence            455566655566777664 23        277899999999999 99999999999999999987777888873  4456


Q ss_pred             EEEEEEe
Q psy9257         500 LTLTLIP  506 (530)
Q Consensus       500 VtLtVip  506 (530)
                      |+|+|++
T Consensus       727 VkltiV~  733 (829)
T KOG3605|consen  727 VKLNIVS  733 (829)
T ss_pred             EEEEEec
Confidence            7776654

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.32  E-value=0.012  Score=63.57  Aligned_cols=49  Identities=29%  Similarity=0.530  Sum_probs=41.3

Q ss_pred             CCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcc
Q psy9257         459 DSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSM  509 (530)
Q Consensus       459 gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~  509 (530)
                      +++|+++||+.||+|++|||+++.++  +++..++++ .++.+.|++.|...
T Consensus       123 ~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge  172 (402)
T TIGR02860       123 HSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGK  172 (402)
T ss_pred             CCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCE
Confidence            58999999999999999999999988  567777774 46788888887653

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=96.31  E-value=0.0058  Score=66.45  Aligned_cols=49  Identities=18%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      |..|.++|+|+++||+.||+|++|||+.+.+|.  ++...+.  ++.+.++|.
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~--D~~~~l~--~e~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLI--DYQFLCA--DEELELEVL   50 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHhc--CCcEEEEEE
Confidence            567899999999999999999999999999984  4555443  345666664

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.12  E-value=0.025  Score=49.05  Aligned_cols=55  Identities=25%  Similarity=0.294  Sum_probs=37.7

Q ss_pred             EEEEccC--------CHHHHcC--CCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKD--------SSAARNG--LLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~g--------SpAarAG--Lr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~~  509 (530)
                      |..|..+        ||-.+.|  ++.||.|++|||+++..-.  .+..+|. ++|+.+.|+|.+...
T Consensus        16 I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   16 IARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             EEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred             EEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence            7777765        6677777  6699999999999998764  4666665 788999999987653

>KOG0606|consensus

Probab=95.95  E-value=0.016  Score=68.64  Aligned_cols=55  Identities=35%  Similarity=0.436  Sum_probs=51.9

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      |.+|..+++|..+||+.||.|+.|||..|.++.+.+|++++.+.|..+.+.+.+-
T Consensus       662 v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttpl  716 (1205)
T KOG0606|consen  662 VGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTPL  716 (1205)
T ss_pred             eeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeecc
Confidence            8899999999999999999999999999999999999999999999999988654

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=95.83  E-value=0.029  Score=58.87  Aligned_cols=79  Identities=22%  Similarity=0.339  Sum_probs=58.3

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec-CCc--eeeEEecc---CCCC
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD-RPL--ERTVTLHR---DSSG  442 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR-~~~--e~tVtL~k---d~~g  442 (530)
                      .||+|..|..++++... |+.||.|++|||+.+.+..+ ....+..+..|+.|++.++| ++.  ..+++|.+   +...
T Consensus       130 ~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~s~~e-~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~~  207 (342)
T COG3480         130 AGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFTSSDE-LIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDDNGKA  207 (342)
T ss_pred             eeEEEEEccCCcchhce-eccCCeEEeeCCeecCCHHH-HHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeeccCCcc
Confidence            68999999999988732 99999999999999988544 45556667789999999987 333  34444433   3344


Q ss_pred             ccceeec
Q psy9257         443 HFGFHFN  449 (530)
Q Consensus       443 ~LGfs~~  449 (530)
                      .+|+++.
T Consensus       208 giGIsl~  214 (342)
T COG3480         208 GIGISLV  214 (342)
T ss_pred             eeeeEee
Confidence            5777764

>KOG0606|consensus

Probab=95.82  E-value=0.024  Score=67.18  Aligned_cols=74  Identities=31%  Similarity=0.389  Sum_probs=57.1

Q ss_pred             EEEeccCCCeeEEEEEec-----CC-----cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         350 LVLCKDASGLIGLRVCAI-----NE-----GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~-----~~-----GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      +.+.+. ...+||+++.+     +.     .-.|..|.++++|..+||+.||.|+.|||+.|.++.+.++.+++.+ .+.
T Consensus       630 I~i~~~-~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~-~gn  707 (1205)
T KOG0606|consen  630 ITIHFS-GKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLK-SGN  707 (1205)
T ss_pred             eeeecc-ccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHh-cCC
Confidence            444444 34478776652     22     3678899999999999999999999999999999999999988854 356


Q ss_pred             eEEEEE
Q psy9257         420 NIRVVI  425 (530)
Q Consensus       420 ~VtLtV  425 (530)
                      .|.+.+
T Consensus       708 ~v~~~t  713 (1205)
T KOG0606|consen  708 KVTLRT  713 (1205)
T ss_pred             eeEEEe
Confidence            666554

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=95.42  E-value=0.046  Score=55.56  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=51.5

Q ss_pred             CCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEEEecCCceeeE
Q psy9257         356 ASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTV  434 (530)
Q Consensus       356 s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLtVrR~~~e~tV  434 (530)
                      ..+-+|+++..+..         ++.-...|||.||..++||+..+++-.+  +.++++... -..+.|+|+|+++...|
T Consensus       203 ~eki~Gyr~~pgkd---------~slF~~sglq~GDIavaiNnldltdp~~--m~~llq~l~~m~s~qlTv~R~G~rhdI  271 (275)
T COG3031         203 NEKIEGYRFEPGKD---------GSLFYKSGLQRGDIAVAINNLDLTDPED--MFRLLQMLRNMPSLQLTVIRRGKRHDI  271 (275)
T ss_pred             CCceEEEEecCCCC---------cchhhhhcCCCcceEEEecCcccCCHHH--HHHHHHhhhcCcceEEEEEecCcccee
Confidence            34557877765443         3455678999999999999999988544  666665433 36789999999888776


Q ss_pred             Ee
Q psy9257         435 TL  436 (530)
Q Consensus       435 tL  436 (530)
                      .+
T Consensus       272 nV  273 (275)
T COG3031         272 NV  273 (275)
T ss_pred             ee
Confidence            54

>KOG3532|consensus

Probab=95.30  E-value=0.043  Score=62.31  Aligned_cols=70  Identities=29%  Similarity=0.342  Sum_probs=54.9

Q ss_pred             eccCCCeeEEEEEec-CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         353 CKDASGLIGLRVCAI-NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       353 ~K~s~G~LG~~V~~~-~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      ++.....+|+.+... +.-|-|..|.++++|.++.|++||++++|||.+|+..  .++.+.++...++...|.
T Consensus       381 ~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~  451 (1051)
T KOG3532|consen  381 RYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLV  451 (1051)
T ss_pred             cccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEE
Confidence            455666789888753 3557799999999999999999999999999999874  347888877665544443

>KOG3834|consensus

Probab=94.31  E-value=0.16  Score=55.23  Aligned_cols=105  Identities=21%  Similarity=0.313  Sum_probs=66.9

Q ss_pred             cccceEEEeccCCCe---eEEEEEecC------CcEEEEEeccCCHhhhcCCC-CCCEEEEECCEEcCCcCHHHHHHHHH
Q psy9257         345 NGIRELVLCKDASGL---IGLRVCAIN------EGVFVCLVERGSPASLVGLR-FGDQILSINGETVAGYNMKQVHKILK  414 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~---LG~~V~~~~------~GV~Vs~V~pGSPAakAGLq-~GDqILaING~~V~g~s~~~v~~LLk  414 (530)
                      ..+|++.+......+   ||+.|+--.      .-.-|-.|.++++|++|||+ -+|.|+-+-+.....  .+++..++.
T Consensus        76 ~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~--~eDl~~lIe  153 (462)
T KOG3834|consen   76 QEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE--EEDLFTLIE  153 (462)
T ss_pred             ceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccc--hHHHHHHHH
Confidence            344555554332333   788777522      11336788999999999998 689999883333333  234667777


Q ss_pred             hCCCCeEEEEEec--CCceeeEEeccC----CCCccceeeccC
Q psy9257         415 AAPVNNIRVVIRD--RPLERTVTLHRD----SSGHFGFHFNKG  451 (530)
Q Consensus       415 ~a~G~~VtLtVrR--~~~e~tVtL~kd----~~g~LGfs~~~G  451 (530)
                      ...++.++|.|..  .+..|.|+++..    ..+.||+.+--|
T Consensus       154 she~kpLklyVYN~D~d~~ReVti~pn~awGgeg~lGCgIG~G  196 (462)
T KOG3834|consen  154 SHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGALGCGIGYG  196 (462)
T ss_pred             hccCCCcceeEeecCCCccceEEeeccccccccceecccccce
Confidence            7777888888864  556778888753    344566665444

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=94.00  E-value=0.17  Score=52.33  Aligned_cols=61  Identities=13%  Similarity=0.227  Sum_probs=44.3

Q ss_pred             ccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257         443 HFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY  510 (530)
Q Consensus       443 ~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~  510 (530)
                      -.|+.+..|+     ...--.++||+.||.+++|||.++.+.  ++..++++  +...+++|+|.|+...
T Consensus       206 l~GYrl~Pgk-----d~~lF~~~GLq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~  268 (276)
T PRK09681        206 IVGYAVKPGA-----DRSLFDASGFKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGAR  268 (276)
T ss_pred             ceEEEECCCC-----cHHHHHHcCCCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEE
Confidence            3466654332     113456789999999999999999877  44555555  5678999999998744

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=93.77  E-value=0.29  Score=51.10  Aligned_cols=51  Identities=35%  Similarity=0.566  Sum_probs=42.1

Q ss_pred             EeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe---EEEEEec
Q psy9257         375 LVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNN---IRVVIRD  427 (530)
Q Consensus       375 ~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~---VtLtVrR  427 (530)
                      .+..+++|+.+||+.||+|+++|++++.++++  +.+.+....+..   +.+.+.|
T Consensus       135 ~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         135 EVAPKSAAALAGLRPGDRIVAVDGEKVASWDD--VRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             ecCCCCHHHHcCCCCCCEEEeECCEEccCHHH--HHHHHHhccCCcccceEEEEEe
Confidence            78999999999999999999999999999876  555555555555   6777777

>KOG3129|consensus

Probab=93.70  E-value=0.15  Score=50.96  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCC-hHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257         452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLK-DKELLEAME-KGGSVLTLTLIPTS  508 (530)
Q Consensus       452 vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls-~eeVv~iLk-rsG~tVtLtVip~~  508 (530)
                      +|.+|.++|||+++||+.||.|+.+..+.-.+.. -..+....+ ..++.+.++|+|..
T Consensus       142 ~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g  200 (231)
T KOG3129|consen  142 VVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG  200 (231)
T ss_pred             EEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence            3889999999999999999999999876666554 223333333 33455666666654

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=93.56  E-value=0.16  Score=56.64  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=33.9

Q ss_pred             CCccceeecc-C---cEEEEccCCHHHHcCCCCCCEEEEEcCe
Q psy9257         441 SGHFGFHFNK-G---QIVSLVKDSSAARNGLLVNHNILEVNGA  479 (530)
Q Consensus       441 ~g~LGfs~~~-G---vV~sVv~gSpAarAGLr~GDrILeVNGq  479 (530)
                      ...||+.+.. |   +|..|..+|||.++||..||.|++|||.
T Consensus       450 ~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~  492 (558)
T COG3975         450 AYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI  492 (558)
T ss_pred             CcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence            4468888862 2   4999999999999999999999999998

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=93.29  E-value=0.97  Score=46.27  Aligned_cols=62  Identities=18%  Similarity=0.326  Sum_probs=46.3

Q ss_pred             ccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchh
Q psy9257         443 HFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQ  511 (530)
Q Consensus       443 ~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e  511 (530)
                      -+|+.+..|+     .++.-...||+.||..+++|+.++.+-  +++..+++  +.-..+.|+|.|+...+
T Consensus       206 i~Gyr~~pgk-----d~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R~G~rh  269 (275)
T COG3031         206 IEGYRFEPGK-----DGSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIRRGKRH  269 (275)
T ss_pred             eEEEEecCCC-----CcchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEecCccc
Confidence            3677765542     445667789999999999999998765  55666665  56678999999987553

>KOG3532|consensus

Probab=92.95  E-value=0.25  Score=56.49  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             cCCCCccceeecc-C----cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         438 RDSSGHFGFHFNK-G----QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       438 kd~~g~LGfs~~~-G----vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      ++....+|+.|.. |    +|..|.++++|.++.|++||++++|||.+|...  .++.+.++.-...+++.+.+.
T Consensus       382 ~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~~~~  454 (1051)
T KOG3532|consen  382 YDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLVERS  454 (1051)
T ss_pred             ccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEEeec
Confidence            4455568888863 3    278899999999999999999999999999877  578888887666777766654

>PF12812 PDZ_1: PDZ-like domain

Probab=89.95  E-value=1.4  Score=37.42  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             CcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         451 GQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       451 GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      |++.....++++...|+..|-.|.+|||+++.++  +++.++++.
T Consensus        32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~   74 (78)
T PF12812_consen   32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKK   74 (78)
T ss_pred             EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHh
Confidence            4466666777777777999999999999999999  578887775

>PF12812 PDZ_1: PDZ-like domain

Probab=89.59  E-value=0.86  Score=38.64  Aligned_cols=47  Identities=30%  Similarity=0.316  Sum_probs=37.0

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      -|+++..+..|+++..-|+..|-.|.+|||+++.++++  ..+++++.+
T Consensus        30 ~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~--f~~vvk~ip   76 (78)
T PF12812_consen   30 VGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDD--FIKVVKKIP   76 (78)
T ss_pred             CCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHH--HHHHHHhCC
Confidence            34555566778888877799999999999999999765  777776654

>KOG1738|consensus

Probab=88.90  E-value=0.55  Score=53.23  Aligned_cols=69  Identities=29%  Similarity=0.455  Sum_probs=54.2

Q ss_pred             CCeeEEEEEecCCc-EEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         357 SGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       357 ~G~LG~~V~~~~~G-V~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      +.++|+-+...-+| .+|..+.++++|...+ |..||.|++||+..+-+|..+-+..-++.... -|.++|.
T Consensus       212 ~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s-gi~l~lk  282 (638)
T KOG1738|consen  212 SEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA-GIELTLK  282 (638)
T ss_pred             ccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc-cceeeee
Confidence            44488888875455 6788999999999998 99999999999999999998777777766543 3444443

>KOG1738|consensus

Probab=86.96  E-value=0.72  Score=52.34  Aligned_cols=67  Identities=21%  Similarity=0.347  Sum_probs=54.1

Q ss_pred             Cccceeec---cCc--EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         442 GHFGFHFN---KGQ--IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       442 g~LGfs~~---~Gv--V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      ..+|+.+.   +|.  |..+..+++|++.+ +..||.|++||++.|.+|..+.++.-+.+...-|.++|....
T Consensus       213 eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp  285 (638)
T KOG1738|consen  213 EGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP  285 (638)
T ss_pred             cCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence            34777764   443  88999999999997 999999999999999999988888888877666666665443

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=82.52  E-value=1.9  Score=42.42  Aligned_cols=38  Identities=34%  Similarity=0.427  Sum_probs=34.8

Q ss_pred             eEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEEC
Q psy9257         360 IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN  397 (530)
Q Consensus       360 LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaIN  397 (530)
                      .|+.+...+..+.|..|.-||+|+++|+..|++|++|-
T Consensus       113 ~GL~l~~e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~  150 (183)
T PF11874_consen  113 AGLTLMEEGGKVIVDEVEFGSPAEKAGIDFDWEITEVE  150 (183)
T ss_pred             CCCEEEeeCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence            68999888888999999999999999999999998764

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=80.46  E-value=3.7  Score=43.63  Aligned_cols=52  Identities=21%  Similarity=0.362  Sum_probs=41.7

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeC
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPT  507 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~  507 (530)
                      +..+..++++. .-|..||.|++|||+++.+.  +++...++  +-|++|+++..|.
T Consensus       134 v~~v~~~~~~~-gkl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~  187 (342)
T COG3480         134 VLSVIDNSPFK-GKLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERH  187 (342)
T ss_pred             EEEccCCcchh-ceeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEec
Confidence            66777777766 33999999999999999877  56777775  6789999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	530
1obz_A	166	Crystal Structure Of The Complex Of The Pdz Tandem		7e-53
1n99_A	166	Crystal Structure Of The Pdz Tandem Of Human Synten		6e-52
1nte_A	82	Crystal Structure Analysis Of The Second Pdz Domain		1e-21
1oby_A	79	Crystal Structure Of The Complex Of Pdz2 Of Synteni		3e-21
1u3b_A	185	Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF		3e-10
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		6e-05
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		7e-05
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		2e-04
2pnt_A	98	Crystal Structure Of The Pdz Domain Of Human Grasp		2e-04
2yt8_A	94	Solution Structure Of The Pdz Domain Of Amyloid Bet		3e-04
1gq5_A	91	Structural Determinants Of The Nherf Interaction Wi		3e-04
1i92_A	91	Structural Basis Of The Nherf Pdz1-Cftr Interaction		3e-04
1g9o_A	91	First Pdz Domain Of The Human Na+H+ EXCHANGER REGUL		3e-04
1gq4_A	90	Structural Determinants Of The Nherf Interaction Wi		4e-04
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		4e-04
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		6e-04
2vz5_A	139	Structure Of The Pdz Domain Of Tax1 (Human T-Cell L		6e-04

>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of Syntenin With An Interleukin 5 Receptor Alpha Peptide. Length = 166

Iteration: 1
 Score =  204 bits (520), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 92/159 (57%), Positives = 122/159 (76%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           RE++LCKD  G IGLR+ +I+ G+FV LV+  SPASLVGLRFGDQ+L INGE  AG++  
Sbjct: 6   REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 408 QVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGL 467
           + HK+LK A    I + IRDRP ERT+T+H+DS+GH GF F  G+I S+VKDSSAARNGL
Sbjct: 66  KAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 468 LVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
           L  HNI E+NG NV+GLKD ++ + +   G+V+T+T++P
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 164

>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin Length = 166

Iteration: 1
 Score =  202 bits (513), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 92/159 (57%), Positives = 119/159 (74%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           RE++LCKD  G IGLR+ +I+ G+FV LV+  SPASLVGLRFGDQ+L INGE  AG++  
Sbjct: 6   REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 408 QVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGL 467
           + HK+LK A    I   IRDRP ERT+T H+DS+GH GF F  G+I S+VKDSSAARNGL
Sbjct: 66  KAHKVLKQAFGEKITXTIRDRPFERTITXHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 468 LVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
           L  HNI E+NG NV+GLKD ++ + +   G+V+T+T+ P
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIXP 164

>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of Syntenin Length = 82

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 60/75 (80%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
           RT+T+H+DS+GH GF F  G+I S+VKDSSAARNGLL  HNI E+NG NV+GLKD ++ +
Sbjct: 6   RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65
Query: 492 AMEKGGSVLTLTLIP 506
            +   G+V+T+T++P
Sbjct: 66  ILSTSGTVVTITIMP 80

>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With A Syndecan-4 Peptide. Length = 79

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 59/74 (79%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
           RT+T+H+DS+GH GF F  G+I S+VKDSSAARNGLL  HNI E+NG NV+GLKD ++ +
Sbjct: 6   RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65
Query: 492 AMEKGGSVLTLTLI 505
            +   G+V+T+T++
Sbjct: 66  ILSTSGTVVTITIM 79

>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 185

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 379 GSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV---VIRDRPLERTV 434
           G PA   G L  GDQI+SING ++ G  +     I+K    N  RV   ++R  P+  TV
Sbjct: 39  GGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLK-NQSRVKLNIVRCPPVT-TV 96
Query: 435 TLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAM 493
            + R D     GF    G I SL++   A R G+ V H I+E+NG +VV    ++++  +
Sbjct: 97  LIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHIL 156
Query: 494 EKGGSVLTLTLIPTSMYQ 511
                 + +  +P +MY+
Sbjct: 157 SNAVGEIHMKTMPAAMYR 174

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 334 SGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFG 390
           SGS L +   T   R+++L K ++GL G  +      EG+FV  +  G PA L G LR G
Sbjct: 1   SGS-LAEEDFTREPRKIILHKGSTGL-GFNIVGGEDGEGIFVSFILAGGPADLSGELRRG 58
Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
           D+ILS+NG  +     +Q    LK A   ++ +V + RP E
Sbjct: 59  DRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQYRPEE 98

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
           R++VL K ++GL G  +      EG+FV  +  G PA L G L+ GDQILS+NG  + G 
Sbjct: 5   RKVVLHKGSTGL-GFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGA 63
Query: 405 NMKQVHKILKAA 416
           + +Q    LK A
Sbjct: 64  SHEQAAAALKGA 75

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
           R+++L K ++GL G  +      EG+FV  +  G PA L G LR GD+ILS+NG  +   
Sbjct: 17  RKIILHKGSTGL-GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLE 431
             +Q    LK A   ++ +V + RP E
Sbjct: 76  THEQAAAALKRAG-QSVTIVAQYRPEE 101

>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1) In Complex With The C-Terminal Peptide Of The Metabotropic Glutamate Receptor Type 1 Length = 98

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 372 FVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
           FVC V   SPA L GL  GD I S+NG  V G   +++  I+KA+
Sbjct: 40  FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS 84

>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4 Precursor Protein-Binding Family A Member 3 (Neuron- Specific X11l2 Protein) (Neuronal Munc18-1-Interacting Protein 3) (Mint-3) (Adapter Protein X11gamma) Length = 94

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 433 TVTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
           T  +HR  +    GF    G I SL++   A R G+ V H I+E+NG +VV      ++E
Sbjct: 10  TAIIHRPHAREQLGFCVEDGIICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIE 69
Query: 492 AMEKGGSVLTLTLIPTSMYQ 511
            + +    + +  +P + Y+
Sbjct: 70  LLTEAYGEVHIKTMPAATYR 89

>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2- Ar And Pdgfr Length = 91

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           G ++ LVE GSPA   GL  GD+++ +NGE V     +QV   ++AA +N +R+++ D
Sbjct: 28  GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84

>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction Length = 91

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           G ++ LVE GSPA   GL  GD+++ +NGE V     +QV   ++AA +N +R+++ D
Sbjct: 28  GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84

>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY Factor Length = 91

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           G ++ LVE GSPA   GL  GD+++ +NGE V     +QV   ++AA +N +R+++ D
Sbjct: 28  GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84

>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2ar And Pdgfr Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           G ++ LVE GSPA   GL  GD+++ +NGE V     +QV   ++AA +N +R+++ D
Sbjct: 27  GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 83

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
           R +V+ + ++GL G  +      EG+F+  +  G PA L G LR GDQILS+NG  +   
Sbjct: 309 RRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNA 367
Query: 405 NMKQVHKILKAA 416
           + +Q    LK A
Sbjct: 368 SHEQAAIALKNA 379

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 337 GLKKAYVTNGIRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQI 393
           GL +  +    R +V+ + ++GL G  +      EG+F+  +  G PA L G LR GDQI
Sbjct: 2   GLGEEDIPREPRRIVIHRGSTGL-GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQI 60
Query: 394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
           LS+NG  +   + +Q    LK A    + ++ + +P E
Sbjct: 61  LSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKPEE 97

>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia Virus Type I) Binding Protein 3 Length = 139

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           ++G++V  V  G PA + GL+ GD+I+ +NG  +      Q  K L       +R+++  
Sbjct: 63  DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 122
Query: 428 RPLERTV 434
           + L++ V
Sbjct: 123 QSLQKAV 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	3e-53
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	5e-39
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	6e-30
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	1e-12
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	4e-26
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	4e-11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	8e-26
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-24
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-09
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-22
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-08
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-18
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	2e-06
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	2e-18
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	5e-10
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	4e-17
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	6e-11
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	5e-16
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	8e-14
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-15
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-08
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	3e-15
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	2e-08
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	4e-15
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	7e-13
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-15
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	3e-14
2d90_A	102	PDZ domain containing protein 1; structural genomi	5e-15
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-12
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-14
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	7e-13
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-14
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-13
2ego_A	96	General receptor for phosphoinositides 1- associat	1e-14
2ego_A	96	General receptor for phosphoinositides 1- associat	8e-12
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	1e-14
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	1e-12
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	1e-14
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	7e-14
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-14
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-10
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	4e-14
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	1e-12
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	7e-14
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	7e-08
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	1e-13
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	3e-12
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-13
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	3e-13
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-13
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	4e-12
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	3e-13
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	8e-13
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	5e-13
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	9e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
3khf_A	99	Microtubule-associated serine/threonine-protein ki	5e-13
3khf_A	99	Microtubule-associated serine/threonine-protein ki	9e-12
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	9e-13
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	4e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	9e-13
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	7e-11
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	1e-12
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	2e-09
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	1e-12
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	4e-07
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	1e-12
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	3e-12
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-12
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-08
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-12
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-08
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	2e-12
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	7e-12
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-12
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-09
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	3e-12
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	1e-09
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	3e-12
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	1e-06
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	3e-12
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-05
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-12
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-07
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	4e-12
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	2e-07
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	4e-12
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	6e-08
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	6e-12
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	5e-11
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	1e-11
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	8e-07
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-11
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-09
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-11
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-10
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-11
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-07
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-11
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-08
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	2e-11
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	6e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-11
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	3e-08
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	2e-11
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	5e-10
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	2e-11
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	7e-08
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-11
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	8e-08
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	3e-11
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	7e-10
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	4e-11
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-08
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	4e-11
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-07
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	4e-11
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	5e-09
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	4e-11
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	2e-07
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	4e-11
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-06
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	5e-11
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	4e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-11
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	9e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-07
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	6e-11
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-07
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	6e-11
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	8e-07
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	9e-11
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-09
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	9e-11
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	9e-08
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-04
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-10
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	8e-08
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	1e-10
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-09
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-10
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	2e-08
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-10
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-09
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-10
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	3e-07
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	1e-10
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-09
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-10
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	7e-10
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	3e-10
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	8e-07
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	3e-10
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	5e-09
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-10
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	6e-08
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	3e-10
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-07
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	3e-10
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	3e-05
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	4e-10
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	4e-10
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	4e-10
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	9e-08
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	4e-10
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	3e-08
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	7e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	3e-07
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-09
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	8e-09
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	1e-09
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	6e-07
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	5e-04
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-09
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	3e-09
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-09
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	6e-07
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-09
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	2e-08
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	1e-09
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	3e-08
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	2e-09
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	1e-06
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	2e-09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	3e-09
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-09
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-05
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	2e-09
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	8e-07
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	2e-09
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	5e-09
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-09
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	8e-09
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	2e-09
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	5e-09
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	2e-09
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	2e-07
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	2e-09
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	3e-08
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-09
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	4e-09
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	3e-09
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	2e-06
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-09
2opg_A	98	Multiple PDZ domain protein; structural protein, s	5e-09
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	3e-09
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-07
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	3e-09
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-06
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	3e-09
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	2e-07
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	4e-09
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	6e-09
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	4e-09
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-07
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	5e-09
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	5e-08
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	5e-09
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	2e-08
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	6e-09
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-08
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	6e-09
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	4e-07
2awx_A	105	Synapse associated protein 97; membrane protein, s	7e-09
2awx_A	105	Synapse associated protein 97; membrane protein, s	4e-07
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	8e-09
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	9e-07
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	9e-09
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-07
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	1e-08
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	1e-08
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	1e-08
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	1e-07
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	1e-08
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	8e-04
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-08
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	7e-07
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-08
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-05
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-08
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	5e-06
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-08
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-07
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	3e-08
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	1e-04
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	3e-08
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	6e-06
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	3e-08
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-05
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	3e-08
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-08
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	2e-07
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	4e-08
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	4e-08
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-04
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	4e-08
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	2e-05
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	4e-08
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	4e-04
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	5e-08
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	9e-08
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	5e-08
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-07
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	5e-08
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	4e-07
2fne_A	117	Multiple PDZ domain protein; structural protein, s	5e-08
2fne_A	117	Multiple PDZ domain protein; structural protein, s	6e-08
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	7e-08
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	7e-08
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	8e-08
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-07
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-06
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-07
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	5e-07
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-07
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-07
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	1e-07
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-07
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-06
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-07
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-07
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-07
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-06
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-07
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-06
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-07
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-06
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-07
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	4e-07
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-07
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	4e-07
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-07
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	3e-07
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	3e-07
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-06
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-07
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-04
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	5e-07
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	6e-07
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	1e-04
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	1e-06
2kl1_A	94	YLBL protein; structure genomics, structural genom	1e-06
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	1e-06
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-06
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	3e-05
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	1e-06
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-06
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	6e-06
3k50_A	403	Putative S41 protease; structural genomics, joint	2e-06
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	2e-06
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-06
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	2e-06
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-06
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-05
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-06
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	1e-04
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	3e-06
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	4e-05
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-06
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	1e-05
4fgm_A	597	Aminopeptidase N family protein; structural genomi	5e-06
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	8e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	3e-05
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	6e-05
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	4e-05
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	5e-05
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	6e-04
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	6e-05
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	1e-04
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	2e-04
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	2e-04
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	2e-04
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	3e-04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	6e-04
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	7e-04
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	7e-04

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score =  176 bits (449), Expect = 3e-53
 Identities = 92/160 (57%), Positives = 122/160 (76%)

Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           RE++LCKD  G IGLR+ +I+ G+FV LV+  SPASLVGLRFGDQ+L INGE  AG++  
Sbjct: 6   REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65

Query: 408 QVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGL 467
           + HK+LK A    I + IRDRP ERT+T+H+DS+GH GF F  G+I S+VKDSSAARNGL
Sbjct: 66  KAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125

Query: 468 LVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507
           L  HNI E+NG NV+GLKD ++ + +   G+V+T+T++P 
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 165

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score =  145 bits (366), Expect = 5e-39
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 302 NAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIG 361
           + A +    A G      + ++   +I         L     +   +EL L K    ++G
Sbjct: 160 SVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILG 219

Query: 362 LRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA 415
           + V     G     V +  +  G PA+  G L  GDQI+SING ++ G  +     I+K 
Sbjct: 220 VVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKG 279

Query: 416 AP--VNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNI 473
                     ++   P+   +    D     GF    G I SL++   A R G+ V H I
Sbjct: 280 LKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRI 339

Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMS 518
           +E+NG +VV    +++++A+      + +  +P +M++ +  + +
Sbjct: 340 IEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQET 384

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score =  111 bits (279), Expect = 6e-30
 Identities = 43/76 (56%), Positives = 60/76 (78%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
           RT+T+H+DS+GH GF F  G+I S+VKDSSAARNGLL  HNI E+NG NV+GLKD ++ +
Sbjct: 6   RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65

Query: 492 AMEKGGSVLTLTLIPT 507
            +   G+V+T+T++P 
Sbjct: 66  ILSTSGTVVTITIMPA 81

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           R + + KD++G +G       +   +  + + S A+  GL     I  ING+ V G    
Sbjct: 6   RTITMHKDSTGHVGFIF----KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDS 61

Query: 408 QVHKILKAAPVNNIRVVI 425
           Q+  IL  +    + + I
Sbjct: 62  QIADILSTSG-TVVTITI 78

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score =  100 bits (252), Expect = 4e-26
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 410 HKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLV 469
           H       + N+  V+  RP         D     GF    G I SL++   A R G+ V
Sbjct: 1   HHHHHLETMGNVTTVLIRRP---------DLRYQLGFSVQNGIICSLMRGGIAERGGVRV 51

Query: 470 NHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
            H I+E+NG +VV    ++++  +      + +  +P +
Sbjct: 52  GHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 90

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 339 KKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSING 398
               + N    L+   D    +G  V    +   +C + RG  A   G+R G +I+ ING
Sbjct: 5   HLETMGNVTTVLIRRPDLRYQLGFSV----QNGIICSLMRGGIAERGGVRVGHRIIEING 60

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVI 425
           ++V     +++  IL  A    I +  
Sbjct: 61  QSVVATPHEKIVHILSNAV-GEIHMKT 86

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score =  103 bits (259), Expect = 8e-26
 Identities = 30/185 (16%), Positives = 74/185 (40%), Gaps = 27/185 (14%)

Query: 347 IRELVLCKDASGLIGLRV-------CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
             E+VL  D     G+++         ++    +  +E  SPA   G L+ GD++++ING
Sbjct: 7   TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 66

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT---------VTLHRDSSGHFGFHFN 449
                   ++ +++L+ + + +   +  +  +  +         V L +  S   G   +
Sbjct: 67  IPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITIS 126

Query: 450 KGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSV 499
                       I  + K S A R G L +   +L ++   +     ++ ++ +++   +
Sbjct: 127 SPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL 186

Query: 500 LTLTL 504
           + L +
Sbjct: 187 VKLKI 191

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 98.7 bits (246), Expect = 5e-24
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 28/186 (15%)

Query: 346 GIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           G   + L K     +GL V      +    V  + +G  A+    L  GD I ++NG  +
Sbjct: 7   GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66

Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRPLE-----------RTVTLHRDSSGHFGF---- 446
           A +   ++  +LK      +  V  + P               VTLH++ +  FGF    
Sbjct: 67  AKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNT-FGFVIRG 125

Query: 447 ------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGS 498
                 + ++  +++ +     A R G +     +L V+G  ++G    E +  +++ G 
Sbjct: 126 GAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ 185

Query: 499 VLTLTL 504
             TL +
Sbjct: 186 EATLLI 191

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
              V L +      G   + G        + +L +   AAR+  L V   I  VNG N+ 
Sbjct: 8   STVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLA 67

Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTSMYQHMM 514
             +  E++  ++  G  + L +        + 
Sbjct: 68  KFRHDEIISLLKNVGERVVLEVEYELPPVSIQ 99

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 29/184 (15%)

Query: 347 IRELVLCKDASGLIGLRVC--------AINEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
             E+ L +  SGL G  +           +  +F+  +  G  A+  G LR  D IL +N
Sbjct: 6   YEEITLERGNSGL-GFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 64

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE----RTVTLHRDSSGHFGFHFNKGQ- 452
              V         + LK A  + +R+ +  R         + L +   G  GF    G  
Sbjct: 65  EVDVREVTHSAAVEALKEAG-SIVRLYVMRRKPPAEKVMEIKLIKGPKG-LGFSIAGGVG 122

Query: 453 -----------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSVL 500
                      +  +++  +A ++G L +   IL VN   +  +  ++ + A++    V+
Sbjct: 123 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182

Query: 501 TLTL 504
            L +
Sbjct: 183 YLKV 186

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNG 478
             +TL R +SG  GF    G             I  ++   +AA++G L VN +IL VN 
Sbjct: 7   EEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 65

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
            +V  +     +EA+++ GS++ L ++        + ++        +  SI
Sbjct: 66  VDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 117

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 81.6 bits (201), Expect = 1e-18
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASG------------------LIGLRVCAINEGVFV 373
           S    G +  Y  + ++ + + K   G                           ++G++V
Sbjct: 9   SGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYV 68

Query: 374 CLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT 433
             V  G PA + GL+ GD+I+ +NG  +      Q  K L       +R+++  + L++ 
Sbjct: 69  TRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKA 128

Query: 434 VTLHRDSSGH 443
           V     S   
Sbjct: 129 VQQSMLSETE 138

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 23/112 (20%)

Query: 429 PLERTVTLHR---DSSGHFGF------------------HFNKGQIVSLV-KDSSAARNG 466
            + + V +H+     +   GF                    +KG  V+ V +   A   G
Sbjct: 22  SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81

Query: 467 LLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSMYQHMMKKM 517
           L +   I++VNG ++  +   +  + + K    V+ L +   S+ + + + M
Sbjct: 82  LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSM 133

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 18/193 (9%)

Query: 329 APLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-----AINEGVFVCLVERGSPAS 383
            P S            N    + L  +   + G+ VC      +  G  +  V      +
Sbjct: 1   GPGSKPQEPATAEIKPNKKILIELKVEKKPM-GVIVCGGKNNHVTTGCVITHVYPEGQVA 59

Query: 384 LVG-LRFGDQILSINGETVAGYNM--KQVHKILKAAPVNNIRVVIRDRPLERT----VTL 436
               L+  D I  ING  +   +M   +VH++        + + +            V L
Sbjct: 60  ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDL 119

Query: 437 HRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLE 491
            + +    G   +  +    I  L++      +  L     I + NG  + GL  +    
Sbjct: 120 MKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 179

Query: 492 AMEKGGSVLTLTL 504
             +     +++ +
Sbjct: 180 LFKGANGKVSMEV 192

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 58.4 bits (141), Expect = 5e-10
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
             + L K A   +GL +     G  +  + +G    +   L+ GD I   NG+ + G   
Sbjct: 115 FNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 174

Query: 407 KQVHKILKAAPVNNIRVVI-RDRPLERT 433
           +  + + K A    + + + R +P  RT
Sbjct: 175 QVCYALFKGAN-GKVSMEVTRPKPTLRT 201

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 350 LVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQV 409
           +      S   G  +     G+FV  VE GSPA    L+  D+I++IN    +  + K+ 
Sbjct: 9   INQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEW 68

Query: 410 HKILKAAPVN-NIRVVIR 426
            + +  A    ++ + +R
Sbjct: 69  EEAMAKAQETGHLVMDVR 86

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 431 ERTVTLHRDSSGHFGFHFN-----KGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
           +  +++++       F F       G  V+ V   S A  + L V+  I+ +N       
Sbjct: 4   DMRISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYN 63

Query: 485 KDKELLEAMEKGGSVLTLTL 504
             KE  EAM K      L +
Sbjct: 64  DSKEWEEAMAKAQETGHLVM 83

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 72.7 bits (179), Expect = 5e-16
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 428 RPLERTVTLHRDSSGHFGF-----HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
           R L R   L +  +G +GF         GQ + LV   S A + GLL    ++EVNG NV
Sbjct: 1   RMLPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59

Query: 482 VGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
                ++++  +    + + L ++     + +
Sbjct: 60  EKETHQQVVSRIRAALNAVRLLVVDPETDEQL 91

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 66.1 bits (162), Expect = 8e-14
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R   L K  +G    L       G ++ LVE GSPA   GL  GD+++ +NGE V     
Sbjct: 5   RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETH 64

Query: 407 KQVHKILKAAPVNNIRVVIRDRPLE 431
           +QV   ++AA  N +R+++ D   +
Sbjct: 65  QQVVSRIRAAL-NAVRLLVVDPETD 88

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFG 390
           SS G   K        R + + K +  L G+ + +  + G++V  V  GS A   GL +G
Sbjct: 5   SSGGERRKDRPYVEEPRHVKVQKGSEPL-GISIVSGEKGGIYVSKVTVGSIAHQAGLEYG 63

Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR---DSSG 442
           DQ+L  NG  +     +Q   I+     + I ++ +  P    ++ H     SSG
Sbjct: 64  DQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQYNPHVHQLSSHSRSGPSSG 117

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 426 RDRPLE---RTVTLHRDSSGHFGFHF----NKGQIVSLV-KDSSAARNGLLVNHNILEVN 477
           +DRP     R V + + S    G         G  VS V   S A + GL     +LE N
Sbjct: 12  KDRPYVEEPRHVKVQKGSEP-LGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFN 70

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G N+    +++    + +    +T+  
Sbjct: 71  GINLRSATEQQARLIIGQQCDTITILA 97

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 3/113 (2%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
           SSGS    +   +  R +    +   L G  +   N  V V  ++    ASL G + GD 
Sbjct: 2   SSGSSGSASKRWSPPRGIHFTVEEGDL-GFTLRG-NTPVQVHFLDPHCSASLAGAKEGDY 59

Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFG 445
           I+SI G       + +V K+LK+     + + +    L+ T ++H  S    G
Sbjct: 60  IVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV-SLLDSTSSMHNKSGPSSG 111

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 432 RTVTLHRDSSGHFGFHFNKG---QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKE 488
           R +    +     GF        Q+  L    SA+  G      I+ + G +   L   E
Sbjct: 17  RGIHFTVEEGD-LGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSE 75

Query: 489 LLEAMEK-GGSVLTLTLI 505
           +++ ++  GG  + + ++
Sbjct: 76  VMKLLKSFGGEEVEMKVV 93

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 70.1 bits (172), Expect = 4e-15
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 348 RELVLCKDASG----LIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
           R L L K   G    L   +      G F+  V+ G PA   G++ GD+++++ GE+V G
Sbjct: 5   RCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG 64

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436
              ++    ++    + + + + D   +R  ++
Sbjct: 65  LGHEETVSRIQGQG-SCVSLTVVDPEADRETSV 96

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 63.5 bits (155), Expect = 7e-13
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 428 RPLERTVTLHRDSSGHFGFH--------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNG 478
           +P  R + L +   G FGF            GQ +  V     A + G+     ++ V G
Sbjct: 3   KP--RCLHLEKGPQG-FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAG 59

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIP 506
            +V GL  +E +  ++  GS ++LT++ 
Sbjct: 60  ESVEGLGHEETVSRIQGQGSCVSLTVVD 87

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 429 PLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           P  R+V + R  +G +GF        ++S V + S A   GL     IL VN  NV    
Sbjct: 1   PRVRSVEVARGRAG-YGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS 59

Query: 486 DKELLEAMEKGGSVLTLTLIP 506
            +++++ + K   VL + +  
Sbjct: 60  HEDVVKLIGKCSGVLHMVIAE 80

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           +R + + +  +G  G  +        +  V RGSPA  VGLR GDQIL++N   V   + 
Sbjct: 3   VRSVEVARGRAGY-GFTLSG-QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASH 60

Query: 407 KQVHKILKAAPVNNIRVVIRDRP 429
           + V K++       + +VI +  
Sbjct: 61  EDVVKLIGKCS-GVLHMVIAEGV 82

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R +V+ K ++G    LR     +G  +  +E GSPA   GL+  D ++++NG++V   + 
Sbjct: 8   RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDH 67

Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
             V ++++    +   +++ D+  E   +L   SSG
Sbjct: 68  DGVVEMIRKGG-DQTTLLVLDKEAESIYSLSGPSSG 102

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           R V + + S+G +GF+       KGQI+  +   S A   GL  N  ++ VNG +V  L 
Sbjct: 8   RVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 66

Query: 486 DKELLEAMEKGGSVLTLTLIP 506
              ++E + KGG   TL ++ 
Sbjct: 67  HDGVVEMIRKGGDQTTLLVLD 87

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 348 RELVLCKDASGLIG--LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
           R +V+ K ++G  G  LR     +G  +  +E GSPA   GL+  D ++++NG++V   +
Sbjct: 7   RVVVIKKGSNGY-GFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 65

Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLER 432
              V ++++    +   +++ D+ LER
Sbjct: 66  HDGVVEMIRKGG-DQTTLLVLDKELER 91

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 63.5 bits (155), Expect = 7e-13
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           R V + + S+G +GF+       KGQI+  +   S A   GL  N  ++ VNG +V  L 
Sbjct: 7   RVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 65

Query: 486 DKELLEAMEKGGSVLTLTLIP 506
              ++E + KGG   TL ++ 
Sbjct: 66  HDGVVEMIRKGGDQTTLLVLD 86

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           R   L +    ++GF         G ++ ++ + S A + GLL    +L +NG  V   +
Sbjct: 3   RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 62

Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMKK 516
             +++E + K G+ +TL ++    Y+  +K 
Sbjct: 63  HAQVVELVRKSGNSVTLLVLDGDSYEKAVKN 93

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 346 GIRELVLCKDASGLIG--LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
           G RE  L K      G  LR+    +G  + ++E GSPA   GL  GD++L ING  V  
Sbjct: 1   GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 60

Query: 404 YNMKQVHKILKAAPVNNIR-VVIRDRPLERTVTLHRD 439
               QV ++++ +  N++  +V+     E+ V    D
Sbjct: 61  EEHAQVVELVRKSG-NSVTLLVLDGDSYEKAVKNQVD 96

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 14/94 (14%)

Query: 429 PLERTVTLHRDSSGHFGFH-------------FNKGQIVSLV-KDSSAARNGLLVNHNIL 474
              + +TL +  +  FGF                    V+ V + S A   GL     I 
Sbjct: 3   QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIA 62

Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
            VNG NV G++ +E+++ ++  G+VL L  +  +
Sbjct: 63  SVNGLNVEGIRHREIVDIIKASGNVLRLETLYGT 96

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 60.5 bits (147), Expect = 8e-12
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 348 RELVLCKDASG-----LIGLRV-----CAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
           + L L K  +      +    +       +    FV  V   SPA L GL  GD I S+N
Sbjct: 6   KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           G  V G   +++  I+KA+  N +R+    
Sbjct: 66  GLNVEGIRHREIVDIIKASG-NVLRLETLY 94

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R   L K+       L+     +GV++  +     A   G+   D ++ +NGE V   + 
Sbjct: 10  RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASH 69

Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD--SSG 442
           ++V + +K +  + +  ++ D+  ++     +   SSG
Sbjct: 70  EEVVEKVKKSG-SRVMFLLVDKETDKRHVEQKSGPSSG 106

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 429 PLERTVTLHRDSSGHFGF-----HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
              R   L ++    +GF        KG  ++ +     A R G+L + +++EVNG NV 
Sbjct: 7   GQPRLCYLVKEGGS-YGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVE 65

Query: 483 GLKDKELLEAMEKGGSVLTLTLI-PTSMYQHMMKKMS 518
               +E++E ++K GS +   L+   +  +H+ +K  
Sbjct: 66  DASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSG 102

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 348 RELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
           +   L K  +G  G  + AI    G F+  V++G PA L GL   D I+ +NG  V    
Sbjct: 5   KLCRLAKGENGY-GFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEP 63

Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLERTV 434
            ++V   ++++   N+ +++  +  + TV
Sbjct: 64  YEKVVDRIQSSG-KNVTLLVCGKKAQDTV 91

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 66.1 bits (162), Expect = 7e-14
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 428 RPLERTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
           +P  +   L +  +G +GFH        G  +  V K   A   GL     I+EVNG NV
Sbjct: 3   KP--KLCRLAKGENG-YGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59

Query: 482 VGLKDKELLEAMEKGGSVLTLTLIP 506
           +    +++++ ++  G  +TL +  
Sbjct: 60  LDEPYEKVVDRIQSSGKNVTLLVCG 84

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
           SSGS       ++ I  + + K  +G +G  V        G+FV  VE GS A   GL  
Sbjct: 2   SSGSS-----GSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCV 56

Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           GD+I  +NG ++    M    K+L ++  + + +++R   
Sbjct: 57  GDKITEVNGLSLESTTMGSAVKVLTSS--SRLHMMVRRMG 94

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
            +V + +  +G  GF          G  VS V + SSA R GL V   I EVNG ++   
Sbjct: 12  HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLEST 71

Query: 485 KDKELLEAMEKGGSVLTLTL 504
                ++ +    S L + +
Sbjct: 72  TMGSAVKVL-TSSSRLHMMV 90

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 67.9 bits (166), Expect = 4e-14
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           R   L +    ++GF         G ++ ++ + S A + GLL    +L +NG  V   +
Sbjct: 15  RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 74

Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMKK 516
             +++E + K G+ +TL ++    Y+  +K 
Sbjct: 75  HAQVVELVRKSGNSVTLLVLDGDSYEKAVKN 105

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIG--LRVCAINEGVFVCLVERGSPASLVGLRF 389
           SS  SG+   +     RE  L K      G  LR+    +G  + ++E GSPA   GL  
Sbjct: 2   SSGSSGMASTFNP---RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD 58

Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL-ERTVTLHRD 439
           GD++L ING  V      QV ++++ +  N++ +++ D    E+ V    D
Sbjct: 59  GDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDGDSYEKAVKNQVD 108

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
           SSGS        N  +++ +    S  +G  +        G+F+  V+ GS ++ VGL  
Sbjct: 2   SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEI 61

Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
           GDQI+ +NG   +  + K+   +LK++    I +V               SSG
Sbjct: 62  GDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSSG 114

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 49.8 bits (119), Expect = 7e-08
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
           E+ V +    S   G           G  +S V   S +A  GL +   I+EVNG +   
Sbjct: 16  EKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSN 75

Query: 484 LKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKK 516
           L  KE +  + K    LT++++  +  +  M  
Sbjct: 76  LDHKEAVNVL-KSSRSLTISIVAAAGRELFMTD 107

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGD 391
            SSGS  +         ++ + +   G  G  +C  +  V V  V+ G PA   GL+  D
Sbjct: 1   GSSGSSGEGDPENGEKLQITIRRGKDGF-GFTICC-DSPVRVQAVDSGGPAERAGLQQLD 58

Query: 392 QILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
            +L +N   V  +   ++   +++ P + I +++    
Sbjct: 59  TVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRVS 95

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 426 RDRPLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
            +   +  +T+ R   G FGF    +    V  V     A R GL     +L++N   V 
Sbjct: 11  PENGEKLQITIRRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE 69

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
             K  EL   +    S + L +
Sbjct: 70  HWKCVELAHEIRSCPSEIILLV 91

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           R  T+ +  SG +GF+        GQ +  V  DS A  +GL     I+EVNG  + G +
Sbjct: 11  RLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69

Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQH 512
             +++ A+  GG    L ++     + 
Sbjct: 70  HGDVVSAIRAGGDETKLLVVDRETDEF 96

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R   + K  SG    L       G F+  V+  SPA   GLR  D+I+ +NG  + G   
Sbjct: 11  RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70

Query: 407 KQVHKILKAAPVNNIRVVIRDRPLER 432
             V   ++A   +  ++++ DR  + 
Sbjct: 71  GDVVSAIRAGG-DETKLLVVDRETDE 95

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           R +++ KD  G  G  V   +  V V  V  G  A   G++ GD+I+ +NG  V   +  
Sbjct: 10  RCVIIQKDQHGF-GFTVSG-DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHL 67

Query: 408 QVHKILKAAPVNNIRVVIRDR 428
           +V K++K+     + ++    
Sbjct: 68  EVVKLIKSGAYVALTLLGSSS 88

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 429 PLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
            ++R V + +D  G FGF    ++  +V  V    +A + G+     I++VNG  V    
Sbjct: 7   GVQRCVIIQKDQHG-FGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSS 65

Query: 486 DKELLEAMEKGGSVLTLTLIPTS 508
             E+++ + K G+ + LTL+ +S
Sbjct: 66  HLEVVKLI-KSGAYVALTLLGSS 87

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 428 RPLERTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
           RP  R   L +   G +GF+        GQ +  V   S AAR+GL     ++EVNG NV
Sbjct: 4   RP--RLCHLRKGPQG-YGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 60

Query: 482 VGLKDKELLEAMEKGGSVLTLTLIP 506
            GL+  E++ +++       L ++ 
Sbjct: 61  EGLRHAEVVASIKAREDEARLLVVG 85

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R   L K   G    L       G ++  V+ GSPA+  GLR  D+++ +NG+ V G   
Sbjct: 6   RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRH 65

Query: 407 KQVHKILKAAPVNNIRVVIRDR 428
            +V   +KA   +  R+++   
Sbjct: 66  AEVVASIKARE-DEARLLVVGP 86

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
            R++ + +   G  G  +C  +  V V  V+ G PA   GL+  D +L +N   V  +  
Sbjct: 4   YRQITIPRGKDGF-GFTICC-DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKC 61

Query: 407 KQVHKILKAAPVNNIRVVIRDRP 429
            ++   +++ P + I +++    
Sbjct: 62  VELAHEIRSCP-SEIILLVWRMV 83

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 432 RTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKE 488
           R +T+ R   G FGF    +    V  V     A R GL     +L++N   V   K  E
Sbjct: 5   RQITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE 63

Query: 489 LLEAMEKGGSVLTLTLI 505
           L   +    S + L + 
Sbjct: 64  LAHEIRSCPSEIILLVW 80

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 70.6 bits (172), Expect = 5e-13
 Identities = 39/234 (16%), Positives = 56/234 (23%), Gaps = 13/234 (5%)

Query: 45  SHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSD 104
           SH     Y      Y     P       +P         S       P     S      
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 105 IRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPN----- 159
           +          +          + +      P+   QPQ P    +   Q Q P      
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 160 GFYPLTSSQQASQASLPYPINPLASNKP-----SAPQPPAYSVQPSHNTAYPTAPLVPST 214
           G       Q     +  YPI+ L    P     + P PP              +   P  
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181

Query: 215 IATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNR 268
           I +  +A P N     +S  P       + P  H      P P+    +    R
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFGLV---IRPYQHLYDDIDPPPLNEDGLIVRCR 232

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 21/169 (12%), Positives = 36/169 (21%), Gaps = 2/169 (1%)

Query: 118 SYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPY 177
            + +  YP    Q      + P Q  A    P  P       G   +             
Sbjct: 3   HHKKRVYPQAQLQY--GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 178 PINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTT 237
            + P              S+   H    P            P      ++   +      
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 238 ATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSALVPLYPSLDNYM 286
              PS     +    +   PI   +  P     +     PL    +  +
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERML 169

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 21/170 (12%), Positives = 35/170 (20%), Gaps = 6/170 (3%)

Query: 27  QTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAP 86
                 F +P           +  + N+          P  Y  P VP        P   
Sbjct: 55  SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG---TPLQQ 111

Query: 87  IYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQ-AP 145
                       P               P+    +   P            +P +    P
Sbjct: 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171

Query: 146 NTYPSMPNQLQAPNGFYPLTSSQQASQASLPYP--INPLASNKPSAPQPP 193
           +   +               +S    ++ LP+   I P          PP
Sbjct: 172 SELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPP 221

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 64.0 bits (156), Expect = 5e-13
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 430 LERTVTLHRDSSGHFGFH-------------FNKGQIVSLVKDSSAA-RNGLLVNHNILE 475
           +   + +H      +GF              +    +V  V+D S A   GL     I  
Sbjct: 2   MRPPIVIHSSGKK-YGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITH 60

Query: 476 VNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
           +NG +V+GL   +++E + K G+ ++L    
Sbjct: 61  INGESVLGLVHMDVVELLLKSGNKISLRTTA 91

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 60.5 bits (147), Expect = 9e-12
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 348 RELVLCKDASG----LIGLRV-----CAINEGVFVCLVERGSPASLVGLRFGDQILSING 398
             +V+          L  +RV             V  VE GSPA   GLR GD I  ING
Sbjct: 4   PPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHING 63

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           E+V G     V ++L  +  N I +      
Sbjct: 64  ESVLGLVHMDVVELLLKSG-NKISLRTTALE 93

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           N  + +  +  GS A+   L  GD +++I+G         +    +K+A   N+ + ++ 
Sbjct: 24  NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQK 82

Query: 428 RP 429
             
Sbjct: 83  SK 84

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 430 LERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
           +  +VTL       +GF       FN    +S +   S AA++ L     ++ ++G N  
Sbjct: 1   MAYSVTLTGPGP--WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
            +   E    ++     L+LTL
Sbjct: 59  TMTHLEAQNKIKSASYNLSLTL 80

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 337 GLKKAYVTNGIRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQIL 394
           GL +  +    R +V+ + ++GL   +      EG+F+  +  G PA L G LR GDQIL
Sbjct: 2   GLGEEDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQIL 61

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           S+NG  +   + +Q    LK A    + ++ + +P
Sbjct: 62  SVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP 95

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 58.1 bits (141), Expect = 7e-11
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 427 DRPLE-RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLL-VNHNILEVNG 478
           D P E R + +HR S+G  GF+       +G  +S +     A  +G L     IL VNG
Sbjct: 7   DIPREPRRIVIHRGSTG-LGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNG 65

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++     ++   A++  G  +T+  
Sbjct: 66  VDLRNASHEQAAIALKNAGQTVTIIA 91

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGD 391
           S    G +  Y  +  R +    +   L G  +   N  V V  ++    AS+ G R GD
Sbjct: 9   SGVDLGTENLYFQSMPRSIRFTAEEGDL-GFTLRG-NAPVQVHFLDPYCSASVAGAREGD 66

Query: 392 QILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT 433
            I+SI         + +V K+LK+   + I + +    L+  
Sbjct: 67  YIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVS-LLDEV 107

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 428 RPLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
           + + R++    +     GF    N    V  +    SA+  G      I+ +   +   L
Sbjct: 21  QSMPRSIRFTAEEGD-LGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79

Query: 485 KDKELLEAMEKGGS-VLTLTLI 505
              E+++ ++  G   + + ++
Sbjct: 80  TLSEVMKLLKSFGEDEIEMKVV 101

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLV--GL 387
           SSGS        + +  + +  D +G  G  V         V V  V  G+PA L    L
Sbjct: 2   SSGSSGNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRL 61

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAA---PVNNIRVVIRDRPLERTVTLHRDSSG 442
             GDQ++ ING  +A +   QV   +KA+       + +++R   +   V     SSG
Sbjct: 62  NEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSSG 119

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLVKDSSAA---RNGLLVNHNILEVNGANVV 482
             + +  D +G FGF+           IVS V   + A      L     ++ +NG ++ 
Sbjct: 17  VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76

Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
                +++  ++      +  L+
Sbjct: 77  EHTHDQVVLFIKASCERHSGELM 99

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           N  + +  ++ G  A+   +R GD +LSI+G    G    +    +K     ++ + ++
Sbjct: 26  NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCT-GSLNMTLQ 83

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
             +V+L   +   +GF       FN    +S +     AA+  + +   +L ++G N  G
Sbjct: 4   NYSVSLVGPAP--WGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQG 61

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +   E    ++     L +TL
Sbjct: 62  MTHLEAQNKIKGCTGSLNMTL 82

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFG 390
           SSGS  +        R+++L K ++GL   +      EG+FV  +  G PA L G LR G
Sbjct: 2   SSGSSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRG 61

Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIRDRPLERTVTLHRDSSG 442
           D+ILS+NG  +     +Q    LK A   ++  V                SSG
Sbjct: 62  DRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQYRPEEYSRFESSGPSSG 113

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLL-VNHNILEVNGANVVGL 484
           R + LH+ S+G  GF+       +G  VS +     A  +G L     IL VNG N+   
Sbjct: 17  RKIILHKGSTG-LGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75

Query: 485 KDKELLEAMEKGGSVLTLTL 504
             ++   A+++ G  +T+  
Sbjct: 76  THEQAAAALKRAGQSVTIVA 95

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASG-----LIGLRV-----CAINEGVFVCLVERGSPA 382
           SSGS     +  +  + + + K  +      +   R      C+      +C ++  SPA
Sbjct: 2   SSGSSGLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPA 61

Query: 383 SLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
              GL+ GD + +ING +  G+  KQV  +++++ 
Sbjct: 62  HCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG 96

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 429 PLERTVTLHRDSSGHFGFH-------------FNKGQIVSLV-KDSSAARNGLLVNHNIL 474
              + VT+ +  +  FGF                   ++  + +DS A   GL     + 
Sbjct: 14  SQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLA 73

Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
            +NG +  G   K++++ +   G++LT+  +
Sbjct: 74  NINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
           SSGS           R + L K     +G  +    A   G+F+  V   S A   GL+ 
Sbjct: 2   SSGSSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQE 61

Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           GDQ+L++N          +  +ILK A   ++RV     P
Sbjct: 62  GDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSGP 101

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 428 RPLERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGAN 480
           + L R VTL +      GF          G  +S V  DS A R GL     +L VN  +
Sbjct: 13  QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVD 72

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
              ++  + +E + K    +++ +
Sbjct: 73  FQDIEHSKAVEIL-KTAREISMRV 95

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           +  + +  V  GS A+L  L  GD I +INGE+       +    +K    +++ + +  
Sbjct: 31  SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCH-DHLTLSVSS 89

Query: 428 RP 429
            P
Sbjct: 90  GP 91

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 429 PLERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
            +  +VTL   S   +GF       F+    +S V   S AA   L     I  +NG + 
Sbjct: 7   GMPHSVTLRGPSP--WGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGEST 64

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
             +   E    ++     LTL++
Sbjct: 65  ELMTHLEAQNRIKGCHDHLTLSV 87

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 348 RELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
            +LV  +    + GLR+   N+ G+FV  V   SPA+  GL  GDQIL +N         
Sbjct: 30  MKLVKFRKGDSV-GLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 88

Query: 407 KQVHKILKAAP-VNNIRVVIRDRP 429
           ++    L   P    + ++ + + 
Sbjct: 89  EEAVLFLLDLPKGEEVTILAQKKK 112

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 428 RPLERTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLLVNHNILEVNGANVV 482
           RP  + V   +  S   G     G      +  +++DS AA+ GL     IL VN  +  
Sbjct: 27  RPSMKLVKFRKGDS--VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 84

Query: 483 GLKDKELLEAMEKGGSVLTLTLI---PTSMYQHMMK 515
            +  +E +  +        +T++      +Y+ +++
Sbjct: 85  NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE 120

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 347 IRELVLCKDASGL---IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
           + ++ L KD+        +    + +GV+V  +    P  L GL+  D++L +N      
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRD 66

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRP 429
           ++   V  ++  +  N + +VI   P
Sbjct: 67  FDCCLVVPLIAESG-NKLDLVISRNP 91

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 427 DRPLE-RTVTLHRDSSGH-FGFHFNKGQ------IVSLVKDSSAARNGLLVNHNILEVNG 478
             P+E   VTL++DS    FGF    G       + ++         GL     +L+VN 
Sbjct: 2   PTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNH 61

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
                     ++  + + G+ L L +
Sbjct: 62  VRTRDFDCCLVVPLIAESGNKLDLVI 87

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 68.6 bits (167), Expect = 3e-12
 Identities = 54/253 (21%), Positives = 90/253 (35%), Gaps = 19/253 (7%)

Query: 23   YFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTF 82
            Y       S F   P     +      +        Y        Y+    P + S  + 
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSS 1545

Query: 83   PSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNS---YPSVP 139
              +P Y    P  S S   YS   A +P+  S  P+ P  S P++P  +  S    P+ P
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSP 1604

Query: 140  N-QPQAPNTYPSMPNQLQAPNGFYPLTS------SQQASQASLPY-PINPLASNKPSAPQ 191
            +    +P+  P+ P+       + P TS      S   S  S  Y P +P  S    +  
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1663

Query: 192  PPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDAT 251
            P + S  P+  +  PT+P    T  +     P+    +   +  + + +P+ P      +
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP------S 1717

Query: 252  RSTPSPIIAPSVP 264
             S  SP  +P+ P
Sbjct: 1718 YSPTSPSYSPTSP 1730

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 64.3 bits (156), Expect = 7e-11
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 23/207 (11%)

Query: 30   SSSFSSPPPPVYQTSS----HTSPNAYNNPP----SPYHSANPPPYYQHPSVPSH-PSVP 80
            +S FSS   P Y  +S     +SP    +P     SP +S   P Y   P+ PS+ P+ P
Sbjct: 1540 TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYS--PTSPSYSPTSP 1597

Query: 81   TF-PSAPIYPSAPPQESH-SPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSV 138
            ++ P++P Y +  P  S  SP Y     +  PT  S  P+ P  S  S  Y      P+ 
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-----PTS 1652

Query: 139  PNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINP--LASNKPSAPQPPAYS 196
            P+      +Y          +  Y  TS   +  +    P +P    ++   +P  P+YS
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712

Query: 197  VQPSHNTAYPTAPL-VPSTIATAPSAP 222
              P+  +  PT+P   P++ + +P++P
Sbjct: 1713 --PTSPSYSPTSPSYSPTSPSYSPTSP 1737

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 47/229 (20%), Positives = 74/229 (32%), Gaps = 19/229 (8%)

Query: 37   PPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQES 96
             P    T    SP   +       +A   P  Q  S                P    Q  
Sbjct: 1478 LPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQ-- 1535

Query: 97   HSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQ 156
             SP Y S   + +  G          S P           S    P +P+  P+ P+   
Sbjct: 1536 -SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSP 1594

Query: 157  APNGFYPLTSSQQASQASLPY-PINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTI 215
                + P  +S   S  S  Y P +P  S     P  P+YS  P+  +  PT+P      
Sbjct: 1595 TSPSYSP--TSPSYSATSPSYSPTSPSYS-----PTSPSYS--PTSPSYSPTSP------ 1639

Query: 216  ATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVP 264
            + +P++P  +    + S    + +  S   +    + S  SP  +P+ P
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 29   TSSSFSSPPPPVYQTSSHTSPNAYN-NPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPI 87
            TS S+S   P    TS   SP + + +P SP +S   P Y       S  S    P++P 
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1675

Query: 88   Y-PSAPPQESHSPYYY---SDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQ 143
            Y P++P     SP Y           P+     PSY   S   +P     S  S    P 
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1735

Query: 144  APNTYPSMPNQ 154
            +P+  P+ P+ 
Sbjct: 1736 SPSYSPTSPSY 1746

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 22/121 (18%)

Query: 29   TSSSFSSPPPPVYQTSSHTSPNA-YNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPI 87
            TS S+S   P    TS   SP +   +P SP +S   P Y   P+ PS+      P++P 
Sbjct: 1651 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYS-----PTSPS 1703

Query: 88   Y-PSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQ-PQAP 145
            Y P++P     SP Y        PT  S  P+ P  S P++P    +  P+ P+  P +P
Sbjct: 1704 YSPTSPSYSPTSPSY-------SPTSPSYSPTSPSYS-PTSP----SYSPTSPSYSPTSP 1751

Query: 146  N 146
            +
Sbjct: 1752 S 1752

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR- 426
           N+ + +  +  GS A+   L  GD IL+I+G              +KAA    + + I  
Sbjct: 28  NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKIDR 86

Query: 427 -DRPLERTVTLHRDSSG 442
            +  L         SSG
Sbjct: 87  AETRLWSPQVSSGPSSG 103

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 431 ERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
              V L   +   +GF       FN+  +++ +   S AA   L     IL ++G     
Sbjct: 6   SGNVVLPGPAP--WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTES 63

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +   +  + ++     L L +
Sbjct: 64  MTHADAQDRIKAASYQLCLKI 84

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           +  + V  V     A    LR GD I++INGE+  G    +    ++ +P + +R+ + 
Sbjct: 25  HTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLD 82

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
             TV +   +   +GF       F+   +V+ V +   A    L     I+ +NG +  G
Sbjct: 3   ALTVDVAGPAP--WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEG 60

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +   E    + +  S L L L
Sbjct: 61  MLHAEAQSKIRQSPSPLRLQL 81

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           N  + +  +  G  A+  G+  GD +LSI+GE        +    ++A     + + +  
Sbjct: 26  NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACG-ERLSLGLS- 83

Query: 428 RPLER 432
           R +  
Sbjct: 84  RAITS 88

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 431 ERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
              V L   +   +GF       FN    +S +     AA+ G+ V   +L ++G N   
Sbjct: 4   SFKVVLEGPAP--WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGS 61

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           L   E    +   G  L+L L
Sbjct: 62  LTHIEAQNKIRACGERLSLGL 82

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 347 IRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
              L + +   GL G+ +            +EG+F+  V    PA+  G+R GD++L +N
Sbjct: 4   ELTLTILRQTGGL-GISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
           G  + G    +  + L+ A    +++ +  R  E +V
Sbjct: 63  GVALQGAEHHEAVEALRGAG-TAVQMRVW-RERETSV 97

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 431 ERTVTLHRDSSGHFGFHF------------NKGQIVS-LVKDSSAARNGLLVNHNILEVN 477
           E T+T+ R + G  G               ++G  +S + ++  AAR G+ V   +LEVN
Sbjct: 4   ELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G  + G +  E +EA+   G+ + + +
Sbjct: 63  GVALQGAEHHEAVEALRGAGTAVQMRV 89

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           +  + V  V     A    LR GD I++ING++       +    ++ +  + +R+ + 
Sbjct: 29  HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLD 86

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 431 ERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
             TV +   +   +GF       F+   IV+ V +   A    L     I+ +NG +   
Sbjct: 7   GLTVDVAGPAP--WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAEN 64

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +   E    + +  S L L L
Sbjct: 65  MLHAEAQSKIRQSASPLRLQL 85

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 347 IRELVLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
            +++ L +  +G  G R+       E +++  +     A   G LR GD+++S++G  V 
Sbjct: 3   EQDIFLWRKETGF-GFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61

Query: 403 GYNMKQVHKILKAAP-VNNIRVVIRDRPL 430
           G + + V ++++ A    ++ + +R   L
Sbjct: 62  GKSHQLVVQLMQQAAKQGHVNLTVRQTRL 90

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 430 LERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANV 481
           +E+ + L R  +G FGF         +   +  +V   +A  +G L     ++ V+G  V
Sbjct: 2   MEQDIFLWRKETG-FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60

Query: 482 VGLKDKELLEAMEKGGSVLTLTLI 505
           +G   + +++ M++      + L 
Sbjct: 61  IGKSHQLVVQLMQQAAKQGHVNLT 84

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPAS 383
           SSGS  + A +      L + +   GL G+ +            +EG+F+  V    PA+
Sbjct: 2   SSGSSGEPARIEEEELTLTILRQTGGL-GISIAGGKGSTPYKGDDEGIFISRVSEEGPAA 60

Query: 384 LVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
             G+R GD++L +NG  + G    +  + L+ A    +++ +    
Sbjct: 61  RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRES 105

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 431 ERTVTLHRDSSGHFGFH------------FNKGQIVSLV-KDSSAARNGLLVNHNILEVN 477
           E T+T+ R + G  G               ++G  +S V ++  AAR G+ V   +LEVN
Sbjct: 16  ELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 74

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G  + G +  E +EA+   G+ + + +
Sbjct: 75  GVALQGAEHHEAVEALRGAGTAVQMRV 101

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
            + + +  V  GS A+L  L  GD I +I+GE  +     +    +K    +N+ + + 
Sbjct: 26  EQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCT-DNLTLTVA 83

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 433 TVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           T  +     G +GF       F +   +S V   S AA   L +   I  ++G N   + 
Sbjct: 4   TQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMT 63

Query: 486 DKELLEAMEKGGSVLTLTL 504
             E    ++     LTLT+
Sbjct: 64  HLEAQNRIKGCTDNLTLTV 82

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLK 485
           R +   + +    G      +     +  ++      R G L V   ILE+NG NV    
Sbjct: 14  RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS 73

Query: 486 DKELLEAMEKGGSVLTLTLIPTS 508
             +L +AM++   +++L +IP  
Sbjct: 74  VDQLQKAMKETKGMISLKVIPNQ 96

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 346 GIRELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
            +R +   K     +G+ +    +    V  +  G      G L  GD+IL ING  V  
Sbjct: 12  MVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71

Query: 404 YNMKQVHKILKAAPVNNIRVVI 425
           +++ Q+ K +K      I + +
Sbjct: 72  HSVDQLQKAMKETK-GMISLKV 92

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLI--GLRVCAINE----GVFVCLVERGSPASLVG 386
           SSGS  +        + + + K  +     G  + ++ E     ++V  V+    AS  G
Sbjct: 2   SSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG 61

Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
           L+ GD+IL IN       N   +   L    +    +++R  P          SSG
Sbjct: 62  LKAGDEILEINNRAADALNSSMLKDFLSQPSLG---LLVRTYPELEEGVESGPSSG 114

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 47.3 bits (112), Expect = 6e-07
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 432 RTVTLHRDSSGHFGFHFN---------KGQIVSLVK-DSSAARNGLLVNHNILEVNGANV 481
           +++ + +  +    + F+         +   V+ VK    A++ GL     ILE+N    
Sbjct: 17  QSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 76

Query: 482 VGLKDKELLEAMEKGGSVLTLTLIP 506
             L    L + + +    L +   P
Sbjct: 77  DALNSSMLKDFLSQPSLGLLVRTYP 101

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
           SSGS  +   V+     L   K   GL G  +        G++V LVE GS A   GLR 
Sbjct: 2   SSGSSGEVRLVS-----LRRAKAHEGL-GFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRV 55

Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           GDQIL +N +++A     +  K LK +    + V    R 
Sbjct: 56  GDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRI 95

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 432 RTVTLHRDSSGH-FGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
           R V+L R  +    GF          G  VSLV   S A + GL V   IL VN  ++  
Sbjct: 10  RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLAR 69

Query: 484 LKDKELLEAMEKGGSVLTL 502
           +   E ++A++    ++  
Sbjct: 70  VTHAEAVKALKGSKKLVLS 88

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 429 PLERTVTLHRDSSGHFGFH------------------FNKGQIVSLV-KDSSAARNGLLV 469
             E+TV L +  S  FGF                   F   Q +  V +   A R GL +
Sbjct: 6   IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 65

Query: 470 NHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY 510
              ++EVNG NVV +  ++++  + +GG+ L + ++  + +
Sbjct: 66  GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 106

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 56.0 bits (135), Expect = 5e-10
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIRDR 428
             ++  V+ G  A   GLR GD ++ +NG+ V     +QV  +++       ++VV+  R
Sbjct: 46  LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105

Query: 429 PLE 431
             +
Sbjct: 106 HPD 108

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLK 485
           R V   +++    G      +     +  ++      R G L V   I E+NG +V    
Sbjct: 3   RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62

Query: 486 DKELLEAMEKGGSVLTLTLIP 506
            ++L + + +    +T  ++P
Sbjct: 63  VEQLQKMLREMRGSITFKIVP 83

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 347 IRELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
            R +   K+    +G+ +         V  +  G      G L  GD+I  ING +VA  
Sbjct: 2   SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61

Query: 405 NMKQVHKILKAAPVNNIRVVIR 426
            ++Q+ K+L+     +I   I 
Sbjct: 62  TVEQLQKMLREMR-GSITFKIV 82

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-AINEGVFVCLVERGSPASLVG-LRFG 390
           SSGS   +      + E+ L  D SGL G  +      GV V  +  G  A   G L+ G
Sbjct: 2   SSGSSGPETVCWGHVEEVELINDGSGL-GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTG 60

Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
           D IL I G  V G   +QV ++L+    N++R+++   P          SSG
Sbjct: 61  DHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVARDPAGDISVTSGPSSG 111

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
              V L  D SG  GF    G+     + ++V    A R+G L    +IL++ G NV G+
Sbjct: 16  VEEVELINDGSG-LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGM 74

Query: 485 KDKELLEAMEKGGSVLTLTL 504
             +++ + +   G+ + + +
Sbjct: 75  TSEQVAQVLRNCGNSVRMLV 94

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R   + K  SG    L       G F+  V+  SPA   GLR  D+I+ +NG  + G   
Sbjct: 11  RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70

Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS 440
             V   ++A   +  ++++ DR  +      R  
Sbjct: 71  GDVVSAIRAGG-DETKLLVVDRETDEFFKKCRVI 103

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 56.0 bits (135), Expect = 7e-10
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           R  T+ +  SG +GF+        GQ +  V  DS A  +GL     I+EVNG  + G +
Sbjct: 11  RLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69

Query: 486 DKELLEAMEKGGSVLTLTLIP 506
             +++ A+  GG    L ++ 
Sbjct: 70  HGDVVSAIRAGGDETKLLVVD 90

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 349 ELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
            ++L K  +    GLR+      +FV  + R   A+  G L  GD IL ING      ++
Sbjct: 3   GVLLMKSRANEEYGLRLG---SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSL 59

Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFH 447
               K+++ +    +++V+            RD   H   H
Sbjct: 60  TDARKLIEKSR-GKLQLVVL-----------RDLEHHHHHH 88

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 433 TVTLHRDSSGH-FGFHFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVVGLKDKEL 489
            V L +  +   +G        V  + +   A ++G L     IL++NG     +   + 
Sbjct: 3   GVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62

Query: 490 LEAMEKGGSVLTLTL 504
            + +EK    L L +
Sbjct: 63  RKLIEKSRGKLQLVV 77

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 59.6 bits (144), Expect = 4e-11
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
           G          + +FV  V+ G PA   GL  GD+I+ +NGE+V G    QV  +++ + 
Sbjct: 50  GGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSD 109

Query: 418 VNNIRVVIRDRP 429
              + + +  + 
Sbjct: 110 -TTLELSVMPKD 120

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 36/113 (31%)

Query: 429 PLERTVTLHRDSSGHFGF----------------------------------HFNKGQIV 454
              +TVTL R S G FGF                                         V
Sbjct: 7   GGPKTVTLKRTSQG-FGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFV 65

Query: 455 SLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
             V +   A   GL     I++VNG +V+G    +++  ++   + L L+++P
Sbjct: 66  KQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMP 118

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGL 484
           + + L ++     G    K +      +  +++  +A R+GL+ V   + EVNG  V   
Sbjct: 6   KIIRLVKNREP-LGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDK 64

Query: 485 KDKELLEAMEKGGSVLTLTLIPTS 508
           + +E+++ + +    +T  +IP S
Sbjct: 65  RPEEIIQILAQSQGAITFKIIPGS 88

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 344 TNGIRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           ++ ++ + L K+   L   ++       + V  + RG  A   G +  GD++  +NG  V
Sbjct: 2   SDSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61

Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRPLERT 433
                +++ +IL  +    I   I     E T
Sbjct: 62  EDKRPEEIIQILAQSQ-GAITFKIIPGSKEET 92

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 332 SSSGSGLKKAYVTNG----IRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASL 384
           SS  SG +++ +        +++ L       +GL +        G+++  V+ GS A  
Sbjct: 2   SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG 61

Query: 385 VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
            GL+ GDQIL +NG +       +  ++LK++    + V    R 
Sbjct: 62  SGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRL 106

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
           E+ V L        G        +  G  ++ V   S A  +GL V   ILEVNG + + 
Sbjct: 21  EKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLN 80

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +   E +  + K    L LT+
Sbjct: 81  ILHDEAVRLL-KSSRHLILTV 100

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI-R 426
           N  + +  ++ G  AS   +R GD +LSI+G +  G    +    +KA    ++ + + R
Sbjct: 28  NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQR 86

Query: 427 DRPLERTVTLHRD-SSG 442
                ++  +    SSG
Sbjct: 87  ASAAAKSEPVSSGPSSG 103

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
            +V+L   +   +GF       FN    +S +     A++  + +   +L ++G +  G+
Sbjct: 7   GSVSLVGPAP--WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGM 64

Query: 485 KDKELLEAMEKGGSVLTLTL 504
              E    ++     L +TL
Sbjct: 65  THLEAQNKIKACTGSLNMTL 84

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 349 ELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMK 407
            LV  +      GLR   +   +FV  + + S A+  G ++ GD +L ING      ++ 
Sbjct: 5   TLVKSRKNEEY-GLR---LASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT 60

Query: 408 QVHKILKAAPVNNIR-VVIRD 427
               +++ +    ++ VV RD
Sbjct: 61  DAKTLIERSK-GKLKMVVQRD 80

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 433 TVTLHRDS-SGHFGFHFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVVGLKDKEL 489
            VTL +   +  +G        V  + +DS AAR+G +     +L++NG     +   + 
Sbjct: 3   KVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 62

Query: 490 LEAMEKGGSVLTLTL 504
              +E+    L + +
Sbjct: 63  KTLIERSKGKLKMVV 77

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 64.7 bits (157), Expect = 5e-11
 Identities = 56/266 (21%), Positives = 95/266 (35%), Gaps = 29/266 (10%)

Query: 5    YPSLEDMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANP 64
            Y +   +    L +     FS    S S  +         +      Y    SP+ +   
Sbjct: 1473 YSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG----FTAYGGADYGEATSPFGAYGE 1528

Query: 65   PPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSY 124
             P        S     + P     P++P     SP Y     +  PT  S  P+ P  S 
Sbjct: 1529 APT-------SPGFGVSSPG--FSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1579

Query: 125  PS---NPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINP 181
             S   +P     S  S    P +P+  P+ P+       + P  +S   S  S  Y    
Sbjct: 1580 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYS--- 1634

Query: 182  LASNKPSAPQPPAYSVQPSHNTAYPTAP-LVPSTIATAPSAPPANIEDATRSTHPTTATA 240
              ++   +P  P+YS  P+  +  PT+P   P++ + +P++P  +    + S  PT+ + 
Sbjct: 1635 -PTSPSYSPTSPSYS--PTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS--PTSPSY 1689

Query: 241  PSVPPAIHDATRSTPSPIIAPSVPPT 266
                P  +  T  + SP  +P   P 
Sbjct: 1690 SPTSPN-YSPTSPSYSP-TSPGYSPG 1713

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 60.5 bits (146), Expect = 9e-10
 Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 21/177 (11%)

Query: 29   TSSSFSSPPPPVYQTSSHTSPNAYN-NPPSPYHSANPPPYYQH-----PSVPSH------ 76
            TS S+S   P    TS   SP + + +P SP +S   P Y        P+ PS+      
Sbjct: 1559 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1618

Query: 77   --PSVPTF-PSAPIYPSAPPQESHSPYYYS----DIRANVPTGGSPVPSYPQGSYPSNPY 129
              P+ P++ P++P Y    P  S +   YS          P      PSY   S   +P 
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT 1678

Query: 130  QAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNK 186
                S  S    P +PN  P+ P+      G+ P   S   S        N   +++
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSP--GSPAYSPKQDEQKHNENENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 45/222 (20%), Positives = 73/222 (32%), Gaps = 9/222 (4%)

Query: 47   TSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIR 106
             +P +  +                P V S  +         Y  A   E+ SP+      
Sbjct: 1470 VTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEA 1529

Query: 107  ANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTS 166
               P  G   P +   S   +P     S  S    P +P+  P+ P+       + P  +
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--T 1587

Query: 167  SQQASQASLPY-PINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPAN 225
            S   S  S  Y P +P  S    +  P + S  P+  +  PT+P    T  +     P+ 
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS- 1646

Query: 226  IEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTN 267
                + S  PT+       P+      S  SP  +P+ P  +
Sbjct: 1647 YSPTSPSYSPTSPAYSPTSPS-----YSPTSPSYSPTSPSYS 1683

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 8/148 (5%)

Query: 289 EVASELINAYA--RENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKA-YVTN 345
           +   +++  Y    + A    +     N  +R    D+   + PL       +     + 
Sbjct: 24  DYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSR 83

Query: 346 GIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRFGDQILSINGETVA 402
            ++E+ L +     +GL V        G+F+  + +G  A  VGL+ GD+I+ ING +++
Sbjct: 84  KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSIS 143

Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRPL 430
               ++V  +++      + + +R   L
Sbjct: 144 SCTHEEVINLIRTE--KTVSIKVRHIGL 169

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 432 RTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
           + V L R      G        F  G  +S + K   A   GL V   I+ +NG ++   
Sbjct: 86  KEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSC 145

Query: 485 KDKELLEAMEKGGSVLTLTL 504
             +E++  + +    +++ +
Sbjct: 146 THEEVINLI-RTEKTVSIKV 164

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 58.1 bits (140), Expect = 6e-11
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 347 IRELVLCKD--ASGLIGLRVCAINE----GVFVCLVERGSPASLVGLRFGDQILSINGET 400
              + + K   A+   G  + ++ E     ++V  V+    AS  GL+ GD+IL IN   
Sbjct: 7   THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRA 66

Query: 401 VAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
               N   +   L    +    +++R  P
Sbjct: 67  ADALNSSMLKDFLSQPSL---GLLVRTYP 92

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 12/87 (13%)

Query: 432 RTVTLHRDSSGHFGFHFN--------KGQI-VSLVK-DSSAARNGLLVNHNILEVNGANV 481
            ++ + +  +    + F+          ++ V+ VK    A++ GL     ILE+N    
Sbjct: 8   HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 67

Query: 482 VGLKDKELLEAMEKGGSV-LTLTLIPT 507
             L +  +L+      S+ L +   P 
Sbjct: 68  DAL-NSSMLKDFLSQPSLGLLVRTYPE 93

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
            R VT+ +  +G  G             ++S + K  +A +   L V   IL VNG ++ 
Sbjct: 5   RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
                E ++A++K G  + L +
Sbjct: 65  SATHDEAVQALKKTGKEVVLEV 86

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 348 RELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
           R + + K  +G +G+ +         + +  + +G  A     L  GD ILS+NGE ++ 
Sbjct: 6   RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65

Query: 404 YNMKQVHKILKAAPVNNIRVVIR 426
               +  + LK      + + ++
Sbjct: 66  ATHDEAVQALKKTG-KEVVLEVK 87

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 63.4 bits (153), Expect = 9e-11
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 25/191 (13%)

Query: 347 IRELVLCKDASGLIGLRV--------CAINEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
             E+ L +  SGL G  +           +  +F+  +  G  A+  G LR  D IL +N
Sbjct: 60  YEEITLERGNSGL-GFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 118

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQ----- 452
              V         + LK A       V+R +P    V   +   G  G  F+        
Sbjct: 119 EVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQ 178

Query: 453 ---------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
                    +  +++  +A ++G L +   IL VN   +  +  ++ + A++    V+ L
Sbjct: 179 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYL 238

Query: 503 TLIPTSMYQHM 513
            +   S     
Sbjct: 239 KVAKPSNAYLS 249

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 53.8 bits (128), Expect = 9e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 343 VTNGIRELVLCKDASGLIGLRVCAINE--GVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           +    R +V+ + ++GL G  +    +  G+F+  +  G PA L G LR GDQILS+NG 
Sbjct: 304 IPREPRRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 362

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
            +   + +Q    LK A    + ++ + +P
Sbjct: 363 DLRNASHEQAAIALKNAG-QTVTIIAQYKP 391

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNG 478
             +TL R +SG  GF    G             I  ++   +AA++G L VN +IL VN 
Sbjct: 61  EEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 119

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
            +V  +     +EA+++ GS++ L ++        + ++        +  SI
Sbjct: 120 VDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 171

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGL 484
           R + +HR S+G  GF+   G+      I  ++    A  +G L     IL VNG ++   
Sbjct: 309 RRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNA 367

Query: 485 KDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
             ++   A++  G  +T+            +    +L +  M+ S+
Sbjct: 368 SHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSL 413

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
              + L K A   +GL +     G  +  + +G    +   L+ GD I   NG+ + G  
Sbjct: 9   KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 68

Query: 406 MKQVHKILKAAPVNNIR-VVIRDRPLE 431
            +  + + K A    +   V R +P  
Sbjct: 69  FQVSYALFKGAN-GKVSMEVTRPKPAA 94

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 426 RDRPLERTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
           R+   +  V L + +    G   +  +    I  L++      +  L     I + NG  
Sbjct: 4   RNSLEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
           + GL  +      +     +++ +
Sbjct: 64  LEGLPFQVSYALFKGANGKVSMEV 87

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKD 486
           + V + +      G           I  +VK  +A ++GLL     +LE+NG  + G   
Sbjct: 27  KIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV 86

Query: 487 KELLEAMEKGGSVLTLTLIPTS 508
            E+ + +      LT  LIP+S
Sbjct: 87  NEVFDLLSDMHGTLTFVLIPSS 108

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
           ++ + + K     +G  V    + V +  + +G  A   G L  GD++L ING  + G +
Sbjct: 26  VKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD 85

Query: 406 MKQVHKILKAAPVNNIRVVIR 426
           + +V  +L       +  V+ 
Sbjct: 86  VNEVFDLLSDMH-GTLTFVLI 105

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 343 VTNGIRELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           +    R +V+ + ++GL G  +      EG+F+  +  G PA L G LR GDQILS+NG 
Sbjct: 11  IPREPRRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 69

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR----DSSGH 443
            +   + +Q    LK A    + ++ + +P E           DSSG 
Sbjct: 70  DLRNASHEQAAIALKNAG-QTVTIIAQYKP-EEYSRFEANSRVDSSGR 115

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 427 DRPLE-RTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLL-VNHNILEVNG 478
           D P E R + +HR S+G  GF+       +G  +S +     A  +G L     IL VNG
Sbjct: 10  DIPREPRRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG 68

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++     ++   A++  G  +T+  
Sbjct: 69  VDLRNASHEQAAIALKNAGQTVTIIA 94

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQI 393
           +KK+     IR+++L K+    +G+ +         + +  +  G PA   G L  GD I
Sbjct: 1   MKKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAI 60

Query: 394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLER 432
           L++NG  +     K+   IL       I   +    LE 
Sbjct: 61  LAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVYVALEH 98

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
            R V L ++     G             ++S +     A R G L V   IL VNG N+ 
Sbjct: 10  IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69

Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTSMYQH 512
             K KE +  + +    +   ++  ++  H
Sbjct: 70  DTKHKEAVTILSQQRGEIEFEVVYVALEHH 99

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 347 IRELVLCKDASGL-IGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
           I ++ L K  SG  +G+++       GVF+  +  G  A+  G L   D++L+ING  + 
Sbjct: 4   ILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63

Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRP 429
               +   +I++A+    + + I    
Sbjct: 64  YGTPELAAQIIQASG-ERVNLTIARPG 89

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 432 RTVTLHRDSSGH-FGFHFNKGQ------IVSLVKDSSAARNG-LLVNHNILEVNGANVVG 483
             V LH+  SG   G    +        I+ L++   AA++G L  N  +L +NG ++  
Sbjct: 5   LQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKY 64

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
              +   + ++  G  + LT+
Sbjct: 65  GTPELAAQIIQASGERVNLTI 85

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 344 TNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           +    ++ L KDA  LIG+ +         +++  V   +PA+L G +  GD+I  +NG 
Sbjct: 22  SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIR 426
           ++ G    +V K+++      + +   
Sbjct: 82  SIKGKTKVEVAKMIQEVK-GEVTIHYN 107

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 429 PLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
            +   VTL +D+    G     G        IV +  ++ AA +G +     I  VNG +
Sbjct: 23  MVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS 82

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
           + G    E+ + +++    +T+  
Sbjct: 83  IKGKTKVEVAKMIQEVKGEVTIHY 106

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
              V L +   G  GF        N    +S ++    A R+G L     +L VNG +V 
Sbjct: 6   SGVVELPKTDEG-LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 64

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
           G + ++ +E ++     + L +
Sbjct: 65  GEQHEKAVELLKAAQGSVKLVV 86

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 54.9 bits (133), Expect = 7e-10
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 344 TNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           +     + L K   GL G  +      N  +++  V  G  A   G L+ GDQ+LS+NG 
Sbjct: 3   SGSSGVVELPKTDEGL-GFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           +V G   ++  ++LKAA   ++++V+R  P
Sbjct: 62  SVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 23/156 (14%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
             G FV  V   S A+  G++ GD I S+NG+ ++  +   +   +   PV   + + ++
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLL 342

Query: 426 RD-RPLERTVTLHR-------DSSGHFGFHF--------NKGQIVSLVK-DSSAARNGLL 468
           RD + +   + L +        SS   G           ++G +V+ VK  + AA+ GL 
Sbjct: 343 RDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLK 402

Query: 469 VNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
               I+  N   V  + +  L + ++   SVL L +
Sbjct: 403 KGDVIIGANQQAVKNIAE--LRKVLDSKPSVLALNI 436

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           ++GV V  V+ G+PA+ +GL+ GD I+  N + V   N+ ++ K+L + P + + + I+ 
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKP-SVLALNIQR 438

Query: 428 RPLERTVTL 436
                 + +
Sbjct: 439 GDSTIYLLM 447

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
             E+ L +  SGL          +  + + G++V  ++    A+L G L+ GD+ILS+NG
Sbjct: 8   EEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
           + +     +    + + A    + + ++   LE ++
Sbjct: 68  QDLKNLLHQDAVDLFRNAG-YAVSLRVQ-HRLESSI 101

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 14/87 (16%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVN 477
           E  + L R  SG  GF+   G             +  + ++ +AA +G L     IL VN
Sbjct: 8   EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G ++  L  ++ ++     G  ++L +
Sbjct: 67  GQDLKNLLHQDAVDLFRNAGYAVSLRV 93

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 429 PLERTVTLHRDSSGH-FGFH--FNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLK 485
            +  TV + +D+    +GFH   +    V  V    +A   L     IL++N      L 
Sbjct: 7   GVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLS 66

Query: 486 DKELLEAMEKGGSVLTLTL 504
            +  ++ + +    L++T+
Sbjct: 67  WERAVDILREAEDSLSITV 85

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
           SSGS   +  V      +          G  +   +  + V  V  G  A    L  GDQ
Sbjct: 2   SSGSSGVRHTVK-----IDKDTLLQDY-GFHISE-SLPLTVVAVTAGGSAH-GKLFPGDQ 53

Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           IL +N E     + ++   IL+ A  +++ + +    
Sbjct: 54  ILQMNNEPAEDLSWERAVDILREAE-DSLSITVVRCT 89

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 347 IRELVLCKDASGLIGLRV-------CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
             E+ L K+ +   G  +          +  V +  V  G PA   G ++ GD++LS++G
Sbjct: 4   TVEVTLHKEGNTF-GFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
             + G    +   ILK        ++I     E  V
Sbjct: 63  IRLLGTTHAEAMSILKQCG-QEAALLIEYDVSETAV 97

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 433 TVTLHRDSSGHFGF---------HFNKGQIV--SLVKDSSAARNGLL-VNHNILEVNGAN 480
            VTLH++ +  FGF               +V  S+     A R G +     +L V+G  
Sbjct: 6   EVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
           ++G    E +  +++ G    L +
Sbjct: 65  LLGTTHAEAMSILKQCGQEAALLI 88

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-L 387
           SSGS        +GI   +L K+    +G  +       N+ + V  V     AS  G +
Sbjct: 2   SSGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTI 61

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
           + G+++LSING+++ G        IL+ A      V++  +     +     S 
Sbjct: 62  QKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSG 115

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 429 PLERTVTLHRDSSGHFGF------HFNKGQIV--SLVKDSSAARNGLL-VNHNILEVNGA 479
                  LH++     GF            I    +  +  A++ G +   + +L +NG 
Sbjct: 14  DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK 73

Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI 505
           ++ G    + L  + +        ++
Sbjct: 74  SLKGTTHHDALAILRQAREPRQAVIV 99

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 432 RTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVVG 483
            TV L R + G FGF       +N    V  L +D  A R+G + +   ILE+NG     
Sbjct: 26  YTVELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKN 84

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +K    +E ++ GG  + L L
Sbjct: 85  MKHSRAIELIKNGGRRVRLFL 105

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 332 SSSGSGLKKAYVTNG-IRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG- 386
           S    G +  Y  +     + L + A G  G  +      N  ++V  +    PA   G 
Sbjct: 9   SGVDLGTENLYFQSMDFYTVELERGAKGF-GFSLRGGREYNMDLYVLRLAEDGPAERSGK 67

Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIRDRP 429
           +R GD+IL INGET       +  +++K      +R  + R   
Sbjct: 68  MRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRGET 110

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVG-L 387
           SS  SG K         ++ L +  SG  G R+       + + +  V     A   G L
Sbjct: 2   SSGSSGYK-------ELDVHLRRMESGF-GFRILGGDEPGQPILIGAVIAMGSADRDGRL 53

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNN-IRVVIRDRPL 430
             GD+++ ++G  VAG   + V  ++  A  N  + + +R + L
Sbjct: 54  HPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVV 482
           E  V L R  SG FGF         +  ++  ++   SA R+G L     ++ V+G  V 
Sbjct: 10  ELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA 68

Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
           G   + +++ M        + L 
Sbjct: 69  GKTHRYVIDLMHHAARNGQVNLT 91

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 349 ELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
              L K + G  G  V      +E + +  +    PA+L G +  GD I+S+N   V G+
Sbjct: 3   HTKLRKSSRGF-GFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61

Query: 405 NMKQVHKILKAAPVNN-IRVVIR 426
              QV KI ++ P+   + + + 
Sbjct: 62  THAQVVKIFQSIPIGASVDLELC 84

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)

Query: 433 TVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
              L + S G FGF    G       QI SLV D  AA +G +     I+ VN   V+G 
Sbjct: 3   HTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61

Query: 485 KDKELLEAME--KGGSVLTLTL 504
              ++++  +    G+ + L L
Sbjct: 62  THAQVVKIFQSIPIGASVDLEL 83

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 332 SSSGSGLK-KAYVTNGIRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPAS 383
           SS  SG+  +        E+ L +  SGL          +  + + G++V  ++    A+
Sbjct: 2   SSGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAA 61

Query: 384 LVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
           L G L+ GD+ILS+NG+ +     +    + + A    + + ++ R   +   +   SSG
Sbjct: 62  LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRLQVQNGPISGPSSG 120

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 14/87 (16%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVN 477
           E  + L R  SG  GF+   G             +  + ++ +AA +G L     IL VN
Sbjct: 18  EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 76

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G ++  L  ++ ++     G  ++L +
Sbjct: 77  GQDLKNLLHQDAVDLFRNAGYAVSLRV 103

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 347 IRELVLCKDASGL---I--GLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
           +  + L +  SGL   +  G+       G+++  +  GSPA+  G L  GD+IL +NG +
Sbjct: 9   VFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68

Query: 401 VAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD-SSG 442
           + G    +   +++      +R ++    +E    +H   SSG
Sbjct: 69  LLGLGYLRAVDLIRHGG-KKMRFLVAKSDVETAKKIHSGPSSG 110

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 52.3 bits (126), Expect = 8e-09
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 433 TVTLHRDSSGHFGF---------HFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANV 481
           TV L R  SG  G              G  +  L+  S AA +G L +   ILEVNG+++
Sbjct: 11  TVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
           +GL     ++ +  GG  +   +
Sbjct: 70  LGLGYLRAVDLIRHGGKKMRFLV 92

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 431 ERTVTLHRDSSGHFGF---------HFNKGQ---IVSLVKDSSAARNGLLVNHNILEVNG 478
           + TVTLHR     FG          HF  G+   ++S V     A   L  N  +  VNG
Sbjct: 8   QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNG 67

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++  ++    ++ + K G    +T+
Sbjct: 68  VSMDNVEHAFAVQQLRKSGKNAKITI 93

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 347 IRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
              + L +      G+ +          +    + +  V +G PA    L+  D++  +N
Sbjct: 8   QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVN 66

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVI---RDRPLERTVTL 436
           G ++         + L+ +   N ++ I   +     RT  L
Sbjct: 67  GVSMDNVEHAFAVQQLRKSG-KNAKITIRRKKGGGWRRTTYL 107

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGL----IGLRVCAI--NEGVFVCLVERGSPASLVG 386
           SSGS  + A  +  ++ + L KD  GL    +  +         + +  +     A   G
Sbjct: 2   SSGSSGELALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSG 61

Query: 387 -LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
            L  GD+++S+N   +   ++ +  +ILKA P   + + I   P
Sbjct: 62  GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 429 PLERTVTLHRDSSGHFGF-------HFNKG----QIVSLVKDSSAARNG-LLVNHNILEV 476
           P  + V L +D  G  GF         +       I SLV D  A R+G LL    ++ V
Sbjct: 14  PEVKIVELVKDCKG-LGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72

Query: 477 NGANVVGLKDKELLEAM 493
           N   +      E +E +
Sbjct: 73  NEYCLDNTSLAEAVEIL 89

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 343 VTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
           +     ++ L KDA  LIG+ +         +++  V   +PA+L G +  GD+I  +NG
Sbjct: 16  IPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG 75

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
            ++ G    +V K+++      + +      
Sbjct: 76  RSIKGKTKVEVAKMIQEVK-GEVTIHYNKLQ 105

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 431 ERTVTLHRDSSGHFGFH------FNKG-QIVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
              VTL +D+    G        +     IV +  ++ AA +G +     I  VNG ++ 
Sbjct: 20  PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 79

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
           G    E+ + +++    +T+  
Sbjct: 80  GKTKVEVAKMIQEVKGEVTIHY 101

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 348 RELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
           +E+ + K    L GL +     G  F+  ++ G     V  +  GD I SINGE + G+ 
Sbjct: 7   KEVNVYKSEDSL-GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR 65

Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLE 431
              V K LK      +  +    P +
Sbjct: 66  HYDVAKKLKELKKEELFTMKLIEPKK 91

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 431 ERTVTLHRDSSGHFGF----HFNKGQIVSLVKDSSAA-RNGLL-VNHNILEVNGANVVGL 484
           E+ V +++      G     +      +  +KD         + V  +I  +NG N+VG 
Sbjct: 6   EKEVNVYKSEDS-LGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGW 64

Query: 485 KDKELLEAM--EKGGSVLTLTLIP 506
           +  ++ + +   K   + T+ LI 
Sbjct: 65  RHYDVAKKLKELKKEELFTMKLIE 88

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVVG 483
            TV L R      G   +  +       I SL K   A R G + +   IL +N +++ G
Sbjct: 7   YTVELKRYGGP-LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 65

Query: 484 LKDKELLEAMEKGGSVLTLTLIP 506
               E +  ++  G  +TL +  
Sbjct: 66  KPLSEAIHLLQMAGETVTLKIKK 88

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 347 IRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
           I  + L +    L G+ +       + + +  + +G  A   G +  GD+IL+IN  ++ 
Sbjct: 6   IYTVELKRYGGPL-GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 64

Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRP 429
           G  + +   +L+ A    + + I+ + 
Sbjct: 65  GKPLSEAIHLLQMAG-ETVTLKIKKQT 90

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 347 IRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
             ++ L K A     GLR   +   +FV  + + S A+  G ++ GD +L ING      
Sbjct: 3   PTKVTLVKSAKNEEYGLR---LASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 59

Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436
           ++     +++ +    +++V++       + +
Sbjct: 60  SLTDAKTLIERSK-GKLKMVVQRDERATLLNV 90

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 432 RTVTLHRDSSGH-FGFHFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVVGLKDKE 488
             VTL + +    +G        V  + +DS AAR+G +     +L++NG     +   +
Sbjct: 4   TKVTLVKSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 63

Query: 489 LLEAMEKGGSVLTLTL 504
               +E+    L + +
Sbjct: 64  AKTLIERSKGKLKMVV 79

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 30/163 (18%)

Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VIR 426
           +G  V  V   SPA L GL+ GD I  IN   +      QV   +    V   +++ V R
Sbjct: 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVER 339

Query: 427 D-RPLERTVTLHR----------DSSGHFGFHFNK-------------GQIVSLVKDSSA 462
           D +PL  +  +            ++   +G                   Q+V   ++S+ 
Sbjct: 340 DNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAG 399

Query: 463 ARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
            R G+     I+  N   V  +K   L    ++    L + ++
Sbjct: 400 WRAGIRPGDIIISANKKPVTDVKS--LQTIAQEKKKELLVQVL 440

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 354 KDASGLIGLRVCAIN---------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGY 404
            +   L GL + A            GV V      S     G+R GD I+S N + V   
Sbjct: 362 SNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVT-- 419

Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436
           ++K +  I +      + V +   P    + +
Sbjct: 420 DVKSLQTIAQEKK-KELLVQVLRGPGSMYLLV 450

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 432 RTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVVG 483
            TV + + + G FGF       +     V  L +D  A RNG + V   I+E+NG +   
Sbjct: 13  FTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRD 71

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +     +E ++ GG  + L L
Sbjct: 72  MTHARAIELIKSGGRRVRLLL 92

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-L 387
           SS  SG            + + K A G  G  +         ++V  +    PA   G +
Sbjct: 2   SSGSSGQD-----FDYFTVDMEKGAKGF-GFSIRGGREYKMDLYVLRLAEDGPAIRNGRM 55

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           R GDQI+ INGE+       +  +++K+     +R++++   
Sbjct: 56  RVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGT 96

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 348 RELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
            +LV  +    + GLR+   N+ G+FV  V   SPA+  GL  GDQIL +N         
Sbjct: 10  MKLVKFRKGDSV-GLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 68

Query: 407 KQVHKILKAA-------------PVNNIRVVIRDRPLERTVTLHRDSSGHF--GFHFNKG 451
           ++    L                     R+V  D      +  H +       G  FNKG
Sbjct: 69  EEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKG 128

Query: 452 QIVSLV 457
           ++  +V
Sbjct: 129 EVFRVV 134

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 428 RPLERTVTLHRDSSGHFGFHF----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
           RP  + V   +      G       + G  V+ V +DS AA+ GL     IL VN  +  
Sbjct: 7   RPSMKLVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 64

Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHS 529
            +  +E +  +        +T++         + +  ++       +
Sbjct: 65  NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 111

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLV--G 386
           S            + +  + +  D +G  G  V         V V  V  G+PA L    
Sbjct: 3   SPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 62

Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
           L  GDQ++ ING  +A +   QV   +KA+   +   ++
Sbjct: 63  LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLVKDSSAA---RNGLLVNHNILEVNGANVV 482
             + +  D +G FGF+           IVS V   + A      L     ++ +NG ++ 
Sbjct: 19  VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78

Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
                +++  ++      +  L+
Sbjct: 79  EHTHDQVVLFIKASCERHSGELM 101

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
            +V L R  +G FG     G+         +  L+KD  A R G L V   +L +NG + 
Sbjct: 13  FSVELVRGYAG-FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGEST 71

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
            GL   + +E +  GG  L L +
Sbjct: 72  QGLTHAQAVERIRAGGPQLHLVI 94

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 345 NGIRELVLCKDASGLIGLRV-----CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
           +G   + L +  +G  GL +      A +  + V  + +  PA   G L  GD +L ING
Sbjct: 10  SGHFSVELVRGYAGF-GLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           E+  G    Q  + ++A     + +VIR   
Sbjct: 69  ESTQGLTHAQAVERIRAGG-PQLHLVIRRPL 98

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 344 TNGIRELVLCKDASGLIGLRV-------CAINEGVFVCLVERGSPASLVG-LRFGDQILS 395
            +   ++ L K+  GL G+ +            G+FV  + + S     G ++ GDQI++
Sbjct: 2   MSETFDVELTKNVQGL-GITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60

Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
           ++G  + G+  +Q  ++L+      + + +  R  E +V
Sbjct: 61  VDGTNLQGFTNQQAVEVLRHTG-QTVLLTLM-RRGETSV 97

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 52.3 bits (126), Expect = 8e-09
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 433 TVTLHRDSSGHFGF---------HFNKGQIV--SLVKDSSAARNG-LLVNHNILEVNGAN 480
            V L ++  G  G                I   S+ K S+   +G + +   I+ V+G N
Sbjct: 7   DVELTKNVQG-LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 65

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
           + G  +++ +E +   G  + LTL
Sbjct: 66  LQGFTNQQAVEVLRHTGQTVLLTL 89

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 432 RTVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVN 477
             VTL +     FG            N       I  +V DS A   G L V   IL +N
Sbjct: 7   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G +V    ++ +++ +++    + L +
Sbjct: 67  GKDVRNSTEQAVIDLIKEADFKIELEI 93

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 347 IRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPASLVG-LRFGDQILSI 396
           I  + L K      G+ +              G+F+  +   SPA L G L+ GD+ILS+
Sbjct: 6   IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65

Query: 397 NGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           NG+ V     + V  ++K A    I + I+
Sbjct: 66  NGKDVRNSTEQAVIDLIKEAD-FKIELEIQ 94

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 345 NGIRELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSING 398
           +  RE+ L K     +G+ +       +     +  +  G PA   G L  GD++ +ING
Sbjct: 8   DNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAING 67

Query: 399 ETVAGYNMKQVHKILKAA-PVNNIRVVIRDRP 429
            ++ G  +      ++      ++ + I   P
Sbjct: 68  TSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
           R V L +      G    +           I +L+    A R+G L +   +  +NG ++
Sbjct: 11  REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70

Query: 482 VGLKDKELLEAME--KGGSVLTLTLIPT 507
           VGL       A+   K  + +TL+++  
Sbjct: 71  VGLPLAACQAAVRETKSQTSVTLSIVHC 98

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ--------------IVSLVKDSSAARNGLL-VNHNILEV 476
             V +HR  +  FGF                    I  ++  S A R   L V   IL V
Sbjct: 12  SDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71

Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
           NG +++ +   ++++ ++  G  +TL +IP
Sbjct: 72  NGQSIINMPHADIVKLIKDAGLSVTLRIIP 101

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 347 IRELVLCKDASGLIGLRV----------CAINEGVFVCLVERGSPASLVG-LRFGDQILS 395
             ++V+ +  +   G  +            I     +  +  GSPA     L+ GD+IL+
Sbjct: 11  TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70

Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           +NG+++       + K++K A   ++ + I  + 
Sbjct: 71  VNGQSIINMPHADIVKLIKDAG-LSVTLRIIPQE 103

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 347 IRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
           +  + + K   G    +       G  V  +         GL+ GD I+ +N + V    
Sbjct: 4   LITVHIVKGPMGFGFTIADSPGGGGQRVKQI--VDSPRSRGLKEGDLIVEVNKKNVQALT 61

Query: 406 MKQVHKILKAAPVNN-IRVVIRDR 428
             QV  +L  +P  + + ++++ +
Sbjct: 62  HNQVVDMLVESPKGSEVTLLVQRQ 85

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKD 486
            TV + +   G FGF         GQ V  +   S    GL     I+EVN  NV  L  
Sbjct: 5   ITVHIVKGPMG-FGFTIADSPGGGGQRVKQI-VDSPRSRGLKEGDLIVEVNKKNVQALTH 62

Query: 487 KELLEAMEKG--GSVLTLTL 504
            ++++ + +   GS +TL +
Sbjct: 63  NQVVDMLVESPKGSEVTLLV 82

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 26/160 (16%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
             G FV  V  GS ++  G++ GD I S+NG+ +   +  ++   +        +++ ++
Sbjct: 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLL 319

Query: 426 RD-RPLERTVTL----------HRDSSGHFGFHFNKGQ---------IVSLVKDSSAARN 465
           R+ +PLE  VTL             +    G   + GQ         I  +VK S AA+ 
Sbjct: 320 RNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQA 379

Query: 466 GLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
           GL  +  I+ VN   V  + +  + + +    +++ L ++
Sbjct: 380 GLQKDDVIIGVNRDRVNSIAE--MRKVLAAKPAIIALQIV 417

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
            +G+ +  V +GSPA+  GL+  D I+ +N + V   ++ ++ K+L A P   I + I  
Sbjct: 362 GKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKP-AIIALQIVR 418

Query: 428 RPLERTVTL 436
                 + +
Sbjct: 419 GNESIYLLM 427

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG-LLVNHNILEVNGANV 481
           E T+ + +  +G  G     G         I  + ++ +A ++G L     ILEVNG ++
Sbjct: 5   ETTIEISKGRTG-LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
                 E +  + +    + LTL
Sbjct: 64  RKATHDEAINVLRQTPQRVRLTL 86

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 347 IRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
              + + K  +GL GL +      +   + +  V     A   G L  GDQIL +NG  +
Sbjct: 5   ETTIEISKGRTGL-GLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63

Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRP 429
                 +   +L+  P   +R+ +    
Sbjct: 64  RKATHDEAINVLRQTP-QRVRLTLYRDE 90

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-------AINEGVFVCLVERGSPASL 384
            SSGS      V     E+VL  D     G+++         ++    +  +E  SPA  
Sbjct: 1   GSSGSSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAER 60

Query: 385 VG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
            G L+ GD++++ING        ++ +++L+ +     +V + 
Sbjct: 61  CGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS-ITSKVTLE 102

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 12/89 (13%)

Query: 428 RPLERTVTLHRDSSGHFGF---------HFNKGQIV--SLVKDSSAARNGLL-VNHNILE 475
                 V L  D    FG                 +   +  DS A R G+L +   ++ 
Sbjct: 13  HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72

Query: 476 VNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           +NG        +E  + +        +TL
Sbjct: 73  INGIPTEDSTFEEANQLLRDSSITSKVTL 101

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 349 ELVLCKDASGLIGLRVC--------AINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           EL   KD S L G+ +             G++V  +  GS A+L G +   D+IL ++  
Sbjct: 17  ELFREKDTSSL-GISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV 75

Query: 400 TVAGYNMKQVHKILKAAPVNNIR-VVIRDRPLE 431
            V G     V ++L+ A  N +R ++IR  PL 
Sbjct: 76  NVQGMAQSDVVEVLRNAG-NPVRLLLIRRLPLL 107

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 433 TVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNGA 479
            +   +D+S   G   +  +            + SL+  S+AA +G +  N  IL V+  
Sbjct: 17  ELFREKDTSS-LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV 75

Query: 480 NVVGLKDKELLEAMEKGGSVLTLTL 504
           NV G+   +++E +   G+ + L L
Sbjct: 76  NVQGMAQSDVVEVLRNAGNPVRLLL 100

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-L 387
           SSGS        +G   + + K     +G+ +          + +  ++  S     G L
Sbjct: 2   SSGSSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGAL 61

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT-LHRDSSG 442
             GD ILSI+G ++   ++ +  K+L +        ++     +R +      SSG
Sbjct: 62  HPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSSG 117

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
             V + +      G               I  +   S   R+G L    +IL ++G ++ 
Sbjct: 17  LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76

Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTS 508
                E  + +      + L ++P  
Sbjct: 77  HCSLLEATKLLASISEKVRLEILPVP 102

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 347 IRELVLCKDASGL----IGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
           +  + L KD+ GL    IG+   A       G+FV  V  G  A   G ++  D ++ ++
Sbjct: 5   LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 64

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVI-RDRPLER 432
           G ++ G        +L+      +R +I R+RP E+
Sbjct: 65  GTSLVGVTQSFAASVLRNTK-GRVRFMIGRERPGEQ 99

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 15/86 (17%)

Query: 433 TVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNG-LLVNHNILEVNG 478
            V L +DS G  G               +    + ++ +  +A R+G + VN  ++EV+G
Sbjct: 7   PVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 65

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++VG+        +      +   +
Sbjct: 66  TSLVGVTQSFAASVLRNTKGRVRFMI 91

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
              + L K A   +GL +     G  +  + +G    +   L+ GD I   NG+ + G  
Sbjct: 3   KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62

Query: 406 MKQVHKILKAAPVNNIR-VVIRDRP 429
            +  + + K A    +   V R +P
Sbjct: 63  FQVCYALFKGAN-GKVSMEVTRPKP 86

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLK 485
           +  V L + +    G   +  +    I  L++      +  L     I + NG  + GL 
Sbjct: 3   KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62

Query: 486 DKELLEAMEKGGSVLTLTL 504
            +      +     +++ +
Sbjct: 63  FQVCYALFKGANGKVSMEV 81

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 346 GIRELVLCKDASGL---I--GLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
            I E+ L K+ + L   +  G+     + G++V  V     A   G +  GD++L++NG 
Sbjct: 5   DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           ++ G   KQ  + L+      + +++    
Sbjct: 65  SLEGATHKQAVETLRNTG-QVVHLLLEKGQ 93

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNG-LLVNHNILEVNGAN 480
             V L ++ +   G     G           + +++   +A  +G +     +L VNG +
Sbjct: 7   FEVELAKNDNS-LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
           + G   K+ +E +   G V+ L L
Sbjct: 66  LEGATHKQAVETLRNTGQVVHLLL 89

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 53.8 bits (129), Expect = 5e-09
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 19/99 (19%)

Query: 429 PLERTVTLHRDSSGHFGFH------------------FNKGQIVSLVKDSSAA-RNGLLV 469
             E+TV L +  S  FGF                   F   Q +  V +   A R GL +
Sbjct: 26  IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 85

Query: 470 NHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
              ++EVNG NVV +  ++++  + +GG+ L + ++  +
Sbjct: 86  GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 124

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 365 CAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424
            A     ++  V+ G  A   GLR GD ++ +NG+ V     +QV  +++    N + V 
Sbjct: 61  PAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVK 119

Query: 425 IRDRP 429
           +    
Sbjct: 120 VVMVT 124

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 347 IRELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
           +  + L K   G +G  V        V +  + RG  A   G ++ GD IL++N   +  
Sbjct: 2   VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGH 443
            +     ++L+        V+I   P   T  L    +G 
Sbjct: 62  LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGD 101

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGL 484
            +V L +   G  GF   +        I  L++  +A ++GL+     IL VN   +V L
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62

Query: 485 KDKELLEAMEKGGSVLTLTLI 505
                LE +    S   + LI
Sbjct: 63  SYDSALEVLRGIASETHVVLI 83

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 17/91 (18%)

Query: 431 ERTVTLHRDSSGHFGF---------------HFNKGQIVS-LVKDSSAARNGLL-VNHNI 473
            R V L R+ S   G                   +G  +  +++DS A +NG L     I
Sbjct: 5   PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64

Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           +EV+G ++     ++ +EA+ K G+ +   +
Sbjct: 65  VEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 348 RELVLCKDASGLIGLRV------------CAINEGVFVCLVERGSPASLVG-LRFGDQIL 394
           R + L ++ S  +G+ +              +  G+F+  V   SPA   G L+ GD+I+
Sbjct: 6   RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
            ++G  +   + +Q  + ++ A  N +  +++
Sbjct: 66  EVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 96

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
           I E+ L K   GL       +G +    +  ++V  +  G  A   G L+ GD++L++N 
Sbjct: 4   IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
            ++     ++    LK    + + + +  +P    ++ H    
Sbjct: 64  VSLEEVTHEEAVTALKNTS-DFVYLKVA-KPTSMYISRHHHHH 104

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNG 478
             + L +   G  GF    G             +  +++  +A ++G L +   +L VN 
Sbjct: 5   MEIKLIKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLI-PTSMY 510
            ++  +  +E + A++     + L +  PTSMY
Sbjct: 64  VSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 347 IRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           +  + L KD +GL GL +          +FV  +    PA+  G +R GD++L IN + +
Sbjct: 26  LHIIELEKDKNGL-GLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQIL 84

Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
            G + +    I+K AP + +++V               SSG
Sbjct: 85  YGRSHQNASAIIKTAP-SKVKLVFIRNEDAVNQMASGPSSG 124

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 419 NNIRVVIRDRPLE---RTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG- 466
            + ++  R   L      + L +D +G  G      +        +V +  +  AA +G 
Sbjct: 11  TDQKIRQRYADLPGELHIIELEKDKNG-LGLSLAGNKDRSRMSIFVVGINPEGPAAADGR 69

Query: 467 LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           + +   +LE+N   + G   +     ++   S + L  
Sbjct: 70  MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVF 107

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
             E+VL +  SGL       I       + G+F+  +  G  A++ G L   D +L +N 
Sbjct: 5   YEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVI-RDRPLERTVTL 436
             V+     +  + LK A    +R+V+ R +P     ++
Sbjct: 65  VDVSEVVHSRAVEALKEAG-PVVRLVVRRRQPPPEETSV 102

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 433 TVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGA 479
            + L R +SG  GF    G             I  ++   +AA +G L VN  +L VN  
Sbjct: 7   EIVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV 65

Query: 480 NVVGLKDKELLEAMEKGGSVLTLTL 504
           +V  +     +EA+++ G V+ L +
Sbjct: 66  DVSEVVHSRAVEALKEAGPVVRLVV 90

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 347 IRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
              + L K     +GL +     + GVFV  + +G  A   G L  GDQIL +NGE V  
Sbjct: 5   TLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRN 64

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRP 429
              + V  +LK +    + + +  R 
Sbjct: 65  ATQEAVAALLKCSL-GTVTLEVG-RI 88

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
            T+ L +      G      +      +  +VK   A  +G L+    IL VNG +V   
Sbjct: 6   LTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNA 65

Query: 485 KDKELLEAMEKGGSVLTLTL 504
             + +   ++     +TL +
Sbjct: 66  TQEAVAALLKCSLGTVTLEV 85

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
           I E+ L K   GL       IG +    +  +++  +  G  A   G L+ GD++L++N 
Sbjct: 4   IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 63

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
             +     ++    LK    + + + +  +P
Sbjct: 64  TNLQDVRHEEAVASLKNTS-DMVYLKVA-KP 92

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 14/86 (16%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNG 478
             V L +   G  GF    G             I  +++  +A ++G L +   +L VN 
Sbjct: 5   MEVNLLKGPKG-LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 63

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            N+  ++ +E + +++    ++ L +
Sbjct: 64  TNLQDVRHEEAVASLKNTSDMVYLKV 89

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 347 IRELVLCKDASGL-IGLRVC-----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           + E+ L +  S   +GL VC       + G+++  ++  S A+  G +R GD+I+ ING 
Sbjct: 20  LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGI 79

Query: 400 TVAGYNMKQVHKILKAAPVNNI-RVVIRDRPLERTVTLHRDSS 441
            V   N ++   +L +    N   ++ R         +  DS 
Sbjct: 80  EV--QNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDSG 120

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 432 RTVTLHRDSSGH-FGFHFNKGQ---------IVSLVKDSSAARNG-LLVNHNILEVNGAN 480
             V L+R +S    G                I  +  +S AA++G +     I+++NG  
Sbjct: 21  EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80

Query: 481 VVGLKDKELLEAMEKGGSVLTL 502
           V   ++   L   E+  +   L
Sbjct: 81  VQNREEAVALLTSEENKNFSLL 102

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
           + +  L     GL GL V      + +  +     A+  G L+ GD ++S+    V GY 
Sbjct: 28  VIQTKLTVGNLGL-GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT 86

Query: 406 MKQVHKILKAAPVNN-IRVVIRD--RPLERTVTLHRDSSG 442
           +++  K+L+   +   +++        + +       SSG
Sbjct: 87  LREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSSG 126

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 433 TVTLHRDSSGHFGFHFNKG----QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDK 487
              L   + G  G    +     QI  L+   +AA +G L     ++ V  ANV+G   +
Sbjct: 30  QTKLTVGNLG-LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLR 88

Query: 488 ELLEAME--KGGSVLTLTL 504
           E L+ ++    G+VL +  
Sbjct: 89  EFLKLLQNITIGTVLQIKA 107

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV--------CAINEGVFVCLVERGSPAS 383
            SSG  +         R+      +   +G+R+         +   G ++  +  G  A 
Sbjct: 4   GSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAE 63

Query: 384 LVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
             G L  G Q+L  NG  +     ++V  I+          V  D  + 
Sbjct: 64  QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMS 112

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 13/88 (14%)

Query: 430 LERTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEV 476
           + R    H  S    G     G+            I  ++   SA + G L     +LE 
Sbjct: 18  ITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77

Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
           NG  +     +E+   + +      + +
Sbjct: 78  NGIPLTSKTYEEVQSIISQQSGEAEICV 105

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 347 IRELVLCKDASGLIGLRV------CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
              + L K   GL G  +         +  ++V  +     A   G L+ GD+++ +NG 
Sbjct: 12  RLNIQLKKGTEGL-GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70

Query: 400 TVAGYNMKQVHKILKAAPVNN-IRVVIR 426
            +AG + ++V  +L++  +   + +++ 
Sbjct: 71  DLAGKSQEEVVSLLRSTKMEGTVSLLVF 98

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 431 ERTVTLHRDSSGHFGF---------HFNKG-QIVSLVKDSSAARNG-LLVNHNILEVNGA 479
              + L + + G  GF           +    + +++   +A ++G L     ++EVNG 
Sbjct: 12  RLNIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70

Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI 505
           ++ G   +E++  +       T++L+
Sbjct: 71  DLAGKSQEEVVSLLRSTKMEGTVSLL 96

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 332 SSSGSGLKKAYVTNG-IRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG 386
           SS  SG     +  G    + + K  SGL GL +          + +  V     A+  G
Sbjct: 2   SSGSSGPATCPIVPGQEMIIEISKGRSGL-GLSIVGGKDTPLNAIVIHEVYEEGAAARDG 60

Query: 387 -LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
            L  GDQIL +NG  +   + ++    L+  P   +R+V+              SSG
Sbjct: 61  RLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDEAHYRDEESGPSSG 116

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG-LLVNHNILEVNGANV 481
           E  + + +  SG  G     G+        I  + ++ +AAR+G L     ILEVNG ++
Sbjct: 18  EMIIEISKGRSG-LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
                +E + A+ +    + L +
Sbjct: 77  RNSSHEEAITALRQTPQKVRLVV 99

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 330 PLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC------AINEGVFVCLVERGSPAS 383
           P       + +  +   +++  + +D+  ++GL+V       +     F+  V++GS A 
Sbjct: 20  PSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLAD 79

Query: 384 LVG-LRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIR 426
            VG LR GD++L  NG  + G   ++V+ I+  + P   + +V+ 
Sbjct: 80  TVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVS 124

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 417 PVNNIRVVIRDRPLER---TVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAA 463
           P  +   +I    L +     ++ RDS    G     G+          I  + K S A 
Sbjct: 20  PSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLAD 79

Query: 464 RNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
             G L     +LE NG  + G   +E+   + +      + L+
Sbjct: 80  TVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV 122

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFV-CLVERGSPASLVGLRFGDQILSINGETVAGYN 405
           +  + L K   G  G  +     G  V  +++        GL+ GD I  I  + V    
Sbjct: 13  LVTIPLIKGPKGF-GFAIADSPTGQKVKMILDSQWCQ---GLQKGDIIKEIYHQNVQNLT 68

Query: 406 MKQVHKILKAAPVNNIR--VVIRDRPLERTVT 435
             QV ++LK  PV      +++R  P   T T
Sbjct: 69  HLQVVEVLKQFPVGADVPLLILRGGPPSPTKT 100

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 426 RDRPLERTVTLHRDSSGHFGFH---FNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVV 482
           +   L  T+ L +   G FGF       GQ V ++ DS   + GL     I E+   NV 
Sbjct: 8   KKAGLLVTIPLIKGPKG-FGFAIADSPTGQKVKMILDSQWCQ-GLQKGDIIKEIYHQNVQ 65

Query: 483 GLKDKELLEAMEK--GGSVLTLTL 504
            L   +++E +++   G+ + L +
Sbjct: 66  NLTHLQVVEVLKQFPVGADVPLLI 89

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 347 IRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
                L K   G  G  +      +E + V  V    PA+  G +  GD I+ IN   V 
Sbjct: 20  FLSTTLKKSNMGF-GFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78

Query: 403 GYNMKQVHKILKAAPVNNI--RVVIRDRPLER 432
           G+    V K+ ++ P+      V+ R  PL  
Sbjct: 79  GHTHADVVKLFQSVPIGQSVNLVLCRGYPLPF 110

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
             + TL + + G FGF    G       Q+ S++ D  AA++G +     I+ +N   V+
Sbjct: 20  FLSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78

Query: 483 GLKDKELLEAME--KGGSVLTLTL 504
           G    ++++  +    G  + L L
Sbjct: 79  GHTHADVVKLFQSVPIGQSVNLVL 102

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
            L       +  GV +  V  GSPA   GLR GD IL+I  + V   N + V++ ++   
Sbjct: 24  QLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRTQS 81

Query: 418 VNNIRVVIRDRPLERTVTL 436
              +++      L   VT 
Sbjct: 82  QLAVQIRRGRETLTLYVTP 100

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 344 TNGIRELVLCKDASGL----IGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQIL 394
           ++G     L +   GL     G +        + G+FV  +  G  A   G L+ GD++L
Sbjct: 5   SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVL 64

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           SING  V          +L AA    I +++    
Sbjct: 65  SINGVDVTEARHDHAVSLLTAAS-PTIALLLEREA 98

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 15/88 (17%)

Query: 431 ERTVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNGLL-VNHNILEV 476
                L R   G  GF          +  G     +  + +  +A R G L V   +L +
Sbjct: 8   RHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
           NG +V   +    +  +      + L L
Sbjct: 67  NGVDVTEARHDHAVSLLTAASPTIALLL 94

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA----INEGVFVCLVERGSPASLVG- 386
             + +      +      L+  K    L  L +          V V  V  G  A   G 
Sbjct: 3   EGAATMFSPEQIAGKDVRLLRIKKEGSL-DLALEGGVDSPVGKVVVSAVYEGGAAERHGG 61

Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR----VVIRDRPLE 431
           +  GD+I++ING+ V  Y + +    L+ A          VV    P E
Sbjct: 62  VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-L 387
           SS  SG    YV       V  +  +   G  +       E + V  +E G  A+L   +
Sbjct: 2   SSGSSGGSFQYVP------VQLQGGAPW-GFTLKGGLEHCEPLTVSKIEDGGKAALSQKM 54

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           R GD++++ING  + G    +   ++K +    +++++R R 
Sbjct: 55  RTGDELVNINGTPLYGSRQ-EALILIKGSF-RILKLIVRRRN 94

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 427 DRPLERTVTLHRDSSGHFGFH------FNKGQIVS-LVKDSSAARNG-LLVNHNILEVNG 478
                + V +       +GF         +   VS +     AA +  +     ++ +NG
Sbjct: 6   SGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNING 65

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
             + G +  E L  ++    +L L +
Sbjct: 66  TPLYGSRQ-EALILIKGSFRILKLIV 90

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 347 IRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
                L K + G  G  V      +E + +  +    PA+L G +  GD I+S+N   V 
Sbjct: 19  FIHTKLRKSSRGF-GFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 77

Query: 403 GYNMKQVHKILKAAPVNNIR--VVIRDRPLE 431
           G+   QV KI ++ P+       + R  PL 
Sbjct: 78  GHTHAQVVKIFQSIPIGASVDLELCRGYPLP 108

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
                L + S G FGF    G       QI SLV D  AA +G +     I+ VN   V+
Sbjct: 19  FIHTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 77

Query: 483 GLKDKELLEAME--KGGSVLTLTL 504
           G    ++++  +    G+ + L L
Sbjct: 78  GHTHAQVVKIFQSIPIGASVDLEL 101

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 319 QAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV------CAINEGVF 372
                + +  +  ++S   ++       +  + L K ++GL G  +         ++ + 
Sbjct: 3   DLNSSTDSAASASAASDVSVEST-AEATVCTVTLEKMSAGL-GFSLEGGKGSLHGDKPLT 60

Query: 373 VCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
           +  + +G+ +     ++ GD+IL + G  + G    +   I+KA P   + +VIR + L+
Sbjct: 61  INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ 120

Query: 432 RTVT 435
              T
Sbjct: 121 SKET 124

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 13/86 (15%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNG-LLVNHNILEVNGA 479
             TVTL + S+G  GF    G+          I  + K +++ ++  +     IL++ G 
Sbjct: 30  VCTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT 88

Query: 480 NVVGLKDKELLEAMEKGGS-VLTLTL 504
            + GL   E    ++      +T+ +
Sbjct: 89  AMQGLTRFEAWNIIKALPDGPVTIVI 114

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 347 IRELVLCKDASGL----IGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
           +  + L KD  GL    IG+ V A       G+FV  V  G  A   G ++  DQI+ ++
Sbjct: 10  LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 69

Query: 398 GETVAGYNMKQVHKILKAAPVNNIR-VVIRDRP 429
           G ++ G        +L+     N+R V+ R++P
Sbjct: 70  GISLVGVTQNFAATVLRNTK-GNVRFVIGREKP 101

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 15/86 (17%)

Query: 433 TVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNG-LLVNHNILEVNG 478
            V L +D  G  G               +    + ++ +  +A R+G + VN  I+EV+G
Sbjct: 12  PVELEKDEDG-LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG 70

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++VG+        +      +   +
Sbjct: 71  ISLVGVTQNFAATVLRNTKGNVRFVI 96

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 346 GIRELVLCKDASGL----------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQIL 394
            I E+ L K+ + L           G+     + G++V  V     A   G +  GD++L
Sbjct: 9   DIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
           ++NG ++ G   KQ  + L+      + +++      
Sbjct: 69  AVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQSP 104

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ---------------IVSLVKDSSAARNG-LLVNHNIL 474
              V L ++ +   G                      + +++   +A  +G +     +L
Sbjct: 10  IFEVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68

Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
            VNG ++ G   K+ +E +   G V+ L L
Sbjct: 69  AVNGVSLEGATHKQAVETLRNTGQVVHLLL 98

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 52.5 bits (125), Expect = 5e-08
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R   + K  SG    L       G F+  V+  SPA   GLR  D+I+ +NG  + G   
Sbjct: 11  RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70

Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS 440
             V   ++A   +  ++++ DR  +      R  
Sbjct: 71  GDVVSAIRAGG-DETKLLVVDRETDEFFKKCRVI 103

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
           R  T+ +  SG +GF+        GQ +  V  DS A  +GL     I+EVNG  + G +
Sbjct: 11  RLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69

Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMK 515
             +++ A+  GG    L ++     +   K
Sbjct: 70  HGDVVSAIRAGGDETKLLVVDRETDEFFKK 99

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGF---------HFNKGQIVS- 455
           M   H       +    +  +  P  +++TL R   G  GF         H +    V  
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKT 59

Query: 456 LVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           +    +A+ +G L     I+ VNG ++ G+  +E +  +++    +TL +
Sbjct: 60  VFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 332 SSSGSGLKKAYVTN----GIRELVLCKDASGL---I--GLRVCAINEGVFVCLVERGSPA 382
            SSG  L    +        + + L +   GL   I  G      +  ++V  V     A
Sbjct: 7   HSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAA 66

Query: 383 SLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           S  G L+ GDQI+++NG+++ G   ++   ILK      + +++    
Sbjct: 67  SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSSD 113

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
                    ++ G++V  V   SP+   G++ GD I+ +NG  +   +  ++ + +    
Sbjct: 24  KASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV--DSSELQEAVLTES 81

Query: 418 VNNIRVVIRDRPLERTVTL 436
              + V   +  L  ++  
Sbjct: 82  PLLLEVRRGNDDLLFSIAP 100

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 346 GIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
             R + + K A   +G+        + +  +  G   +  G L  GD I  +NG+ V G 
Sbjct: 6   SGRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GS 64

Query: 405 NMKQVHKILKAAPVNNIRVVIRDRP 429
           + + + ++L+ A   ++ + I   P
Sbjct: 65  DPRALQELLRNAS-GSVILKILSGP 88

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 53.8 bits (128), Expect = 8e-08
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 350 LVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQ 408
           LV  +    + GLR+   N+ G+FV  V   SPA+  GL  GDQIL +N         ++
Sbjct: 4   LVKFRKGDSV-GLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 62

Query: 409 VHKILKAA-------------PVNNIRVVIRDRPLERTVTLHRDSSGHF--GFHFNKGQI 453
               L                     R+V  D      +  H +       G  FNKG++
Sbjct: 63  AVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEV 122

Query: 454 V 454
            
Sbjct: 123 F 123

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 346 GIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
           GIR+++L K+    +G+ +         + +  +  G PA   G L  GD IL++NG  +
Sbjct: 27  GIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86

Query: 402 AGYNMKQVHKILKAAPVNNIRVVIR 426
                K+   IL       I   + 
Sbjct: 87  RDTKHKEAVTILSQQR-GEIEFEVV 110

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
            R V L ++     G             ++S +     A R G L V   IL VNG N+ 
Sbjct: 28  IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 87

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
             K KE +  + +    +   +
Sbjct: 88  DTKHKEAVTILSQQRGEIEFEV 109

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
           + E+ L K   GL       +G +    +  ++V  +  G  A   G L+ GD++L +N 
Sbjct: 25  VVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNN 84

Query: 399 ETVAGYNMKQVHKILKAAPVNNIR-VVIRDRPL 430
            ++     ++   ILK      +   V +   +
Sbjct: 85  YSLEEVTHEEAVAILKNTS-EVVYLKVGKPTTI 116

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 433 TVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNGA 479
            + L +   G  GF    G             +  ++   +A ++G L V   +L VN  
Sbjct: 27  EIKLFKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY 85

Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI-PTSMY 510
           ++  +  +E +  ++    V+ L +  PT++Y
Sbjct: 86  SLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 18/96 (18%)

Query: 431 ERTVTLHRDSSGH-FGF---------------HFNKGQIVS-LVKDSSAARNGLL-VNHN 472
            R V L +  +    GF                   G  +S LV    A   GLL VN  
Sbjct: 30  HRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDE 89

Query: 473 ILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
           +LEVNG  V G    ++ + M      L +T+ P +
Sbjct: 90  VLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN 125

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 318 RQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASG-------------LIGLRV 364
           R+ P    +M        S +    +    R + LCK  +               +    
Sbjct: 1   RKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHG 60

Query: 365 CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV 423
                G+F+  +  G  A   G L   D++L +NG  V+G ++ QV  ++ A    N+ +
Sbjct: 61  LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLII 119

Query: 424 VIR 426
            +R
Sbjct: 120 TVR 122

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

Query: 347 IRELVLCKDASGLIGLRV------CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
              + L K   GL G  +         +  ++V  +     A   G L+ GD+++ +NG 
Sbjct: 31  RLNIQLKKGTEGL-GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 89

Query: 400 TVAGYNMKQVHKILKAAPVNN-IRVVIRDRPLE 431
            + G + ++V  +L++  +   + +++  R  +
Sbjct: 90  DLVGKSQEEVVSLLRSTKMEGTVSLLVF-RQED 121

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 426 RDRPLERTVTLHRDSSGHFGFHFNKG----------QIVSLVKDSSAARNG-LLVNHNIL 474
           +       + L + + G  GF                + +++   +A ++G L     ++
Sbjct: 26  KKIGKRLNIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLI 84

Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
           EVNG ++VG   +E++  +       T++L+
Sbjct: 85  EVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 347 IRELVLCKDASGLIGLRVCAINEGVFV-CLVERGSPASLVGLRFGDQILSINGETVAGYN 405
           +  L + K A G  G  +     G  V  +++        GL  GD I+ IN + V   +
Sbjct: 11  LMTLTIVKGAQGF-GFTIADSPTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQNLS 66

Query: 406 MKQVHKILKAAPVNN-IRVVIR 426
             +V  ILK  P+ +   ++I 
Sbjct: 67  HTEVVDILKDCPIGSETSLIIH 88

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 428 RPLERTVTLHRDSSGHFGFHF---NKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGL 484
           +    T+T+ + + G FGF       GQ V  + D      GL     I+E+N  NV  L
Sbjct: 8   QAELMTLTIVKGAQG-FGFTIADSPTGQRVKQILDIQGCP-GLCEGDLIVEINQQNVQNL 65

Query: 485 KDKELLEAMEKG--GSVLTLTL 504
              E+++ ++    GS  +L +
Sbjct: 66  SHTEVVDILKDCPIGSETSLII 87

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 332 SSSGSGLK---KAYVTNGIRELVLCKDASGLIGLRV------CAINEGVFVCLVERGSPA 382
            SSG  L      + + G+R + + K  +  +G+ +         +  +F+ ++     A
Sbjct: 7   HSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVA 66

Query: 383 SLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIRDRPLERT 433
           +    LR GD+I++I G +  G    Q   +LK A   +I   V+    +  T
Sbjct: 67  AQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS-GSIEMQVVAGGDVSET 118

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
           RTV + +  +   G     G           I  +     AA+   L V   I+ + G +
Sbjct: 26  RTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85

Query: 481 VVGLKDKELLEAMEKGGSVLTLTLIP 506
             G+   + +  ++     + + ++ 
Sbjct: 86  TEGMTHTQAVNLLKNASGSIEMQVVA 111

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 14/96 (14%)

Query: 346 GIRELVLCKDASGLIGLRVC------------AINEGVFVCLVERGSPASLVG-LRFGDQ 392
           G+REL + K     +G+ +               +EG+F+  V     A   G LR G +
Sbjct: 9   GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68

Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
           +L +N +++ G    +  ++L++   + + V++ D 
Sbjct: 69  LLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDG 103

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 429 PLERTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLL-VNH 471
           P  R + + +      G     G                 I  +    +A R+G L V  
Sbjct: 8   PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67

Query: 472 NILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
            +LEVN  +++GL   E ++ +   G  LT+ +
Sbjct: 68  RLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 17/91 (18%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLL-VNHNI 473
            R V L R+ S   G     G+                I  +++DS A +NG L     I
Sbjct: 25  PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 84

Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           +EV+G ++     ++ +EA+ K G+ +   +
Sbjct: 85  VEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
             G+F+  V   SPA   G L+ GD+I+ ++G  +   + +Q  + ++ A  N +  +++
Sbjct: 58  MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 116

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 431 ERTVTLHRDSSGHFGF---------HFNKGQI---VSLVKDSSAARNGLLVNHNILEVNG 478
           + TVTL +DS   FG          HF  G+    +S V     A   L  N  ++ VNG
Sbjct: 15  QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNG 74

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
             +  +     ++ + K G +  + +
Sbjct: 75  TPMEDVLHSFAVQQLRKSGKIAAIVV 100

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPA 382
           SS  SG+++  V      + L KD+    G+ V               + +  V  G PA
Sbjct: 2   SSGSSGMEE--VIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA 59

Query: 383 SLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
              G L+  D+++ +NG  +         + L+ +      +V++     +   L   SS
Sbjct: 60  D--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIVVKRPRKVQVAPLSGPSS 116

Query: 442 G 442
           G
Sbjct: 117 G 117

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 347 IRELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
           +  + L K   G +G  V        V +  + RG  A   G ++ GD IL++N   +  
Sbjct: 9   VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 68

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
            +     ++L+        V+I   P   T  L    +G
Sbjct: 69  LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 107

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 428 RPLERTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
            P   +V L +   G  GF   +        I  L++  +A ++GL+     IL VN   
Sbjct: 6   EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65

Query: 481 VVGLKDKELLEAMEKGGSVLTLTLI 505
           +V L     LE +    S   + LI
Sbjct: 66  LVDLSYDSALEVLRGIASETHVVLI 90

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 347 IRELVLCKDASGL----IGLRVCAIN------EGVFVCLVERGSPASLVG-LRFGDQILS 395
              LVL +D+  L    IG R    N      EG+FV  +    PA+  G L+  D+I+ 
Sbjct: 9   SLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68

Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           +NG  ++     Q  +  K A    I V +  R 
Sbjct: 69  VNGRDLSRATHDQAVEAFKTAK-EPIVVQVLRRT 101

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)

Query: 431 ERTVTLHRDSSGHFGF-----------HFNKGQ----IVSLVKDSSAARNGLL-VNHNIL 474
             T+ LHRDS    GF           H         +  +V    AA+ G L ++  I+
Sbjct: 9   SLTLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67

Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           EVNG ++      + +EA +     + + +
Sbjct: 68  EVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 17/91 (18%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLL-VNHNI 473
            R V + R+ +   G     GQ                I  +++DS A +   L     I
Sbjct: 16  PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75

Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           LEV+G ++      E +EA++  G+ +   +
Sbjct: 76  LEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
            +G+F+  V   SPA     L+ GD+IL ++G  +   +  +  + +K A  N +  +++
Sbjct: 49  LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAG-NPVVFIVQ 107

Query: 427 DRP 429
              
Sbjct: 108 SLS 110

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
             T+   + S+   G     G         IV++ +  SA   G L V H ILEVNG  +
Sbjct: 6   SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTL 65

Query: 482 VGLKDKELLEAMEKGGSVLTLTLI 505
            G + +E    + +         I
Sbjct: 66  RGKEHREAARIIAEAFKTKDRDYI 89

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 344 TNGIRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
           +     LV  K ++  +G+ +            +  ++RG  A   G L+ G  IL +NG
Sbjct: 3   SGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIR 426
            T+ G   ++  +I+  A     R  I 
Sbjct: 63  LTLRGKEHREAARIIAEAFKTKDRDYID 90

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 347 IRELVLCKDASG-----LIGLRVCAINE-GVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           I  + + + ++G     ++ LR   + +  +FV  V+ GS A     L+  DQIL+IN  
Sbjct: 26  IEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHT 85

Query: 400 TVA-GYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
            +    + +Q   +L+     ++R+++   P+    +    SSG
Sbjct: 86  PLDQNISHQQAIALLQQTT-GSLRLIVAREPVHTKSSTSGPSSG 128

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 432 RTVTLHRDSSGHFGF------HFNKGQ----IVSLVKDSSAARNG-LLVNHNILEVNGAN 480
             + + R S+G  GF        N G+    +  +   S A R+  L  N  IL +N   
Sbjct: 27  EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTP 86

Query: 481 V-VGLKDKELLEAMEKGGSVLTLTL 504
           +   +  ++ +  +++    L L +
Sbjct: 87  LDQNISHQQAIALLQQTTGSLRLIV 111

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-V 424
           +  GV V  V+   PA+   L   D I  ++ + +A  +   +   L    +   I++  
Sbjct: 55  VTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITY 111

Query: 425 IRD-RPLERTVTL 436
            R+ +    ++ L
Sbjct: 112 YRNGKEETTSIKL 124

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 351 VLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
           V  K  +G+ GL + A         G++V  V +G  A + G L  GDQ+LS++G ++ G
Sbjct: 15  VTLKKQNGM-GLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 73

Query: 404 YNMKQVHKILKAAPVNNIR-VVIRDRPLER 432
            + ++  +++     + +   V +   + R
Sbjct: 74  LSQERAAELMTRTS-SVVTLEVAKQGAIRR 102

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 433 TVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNG-LLVNHNILEVNGANV 481
           TVTL + +    G      +          + S+VK  +A  +G L     +L V+G ++
Sbjct: 14  TVTLKKQNG--MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
           VGL  +   E M +  SV+TL +
Sbjct: 72  VGLSQERAAELMTRTSSVVTLEV 94

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 355 DASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
               L       +  GV +  V  GSPA   GLR GD IL+I  + V   N + V++ ++
Sbjct: 242 AELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVR 299

Query: 415 AAPVNNIRVVIRDRPLERTVTL 436
                 +++      L   VT 
Sbjct: 300 TQSQLAVQIRRGRETLTLYVTP 321

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
            +GV+V  V    PA+   L  GD+I +I+G+ +     +Q+   ++       +RV  I
Sbjct: 4   AKGVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFI 60

Query: 426 RD-RPLERTVTL 436
           RD +  E  + L
Sbjct: 61  RDRKQHEAELVL 72

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
            +GV+V  V+   PA+   L  GD I  I+G      + ++    + +  V   +++   
Sbjct: 6   YDGVYVMSVKDDVPAA-DVLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYK 62

Query: 426 RD-RPLERTVTL 436
              +  +  + L
Sbjct: 63  HGDKNEQADIKL 74

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 347 IRELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
           I  + L  +    +G+ +        + G+++  + +G   +  G +  GD +L +N   
Sbjct: 6   IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65

Query: 401 VAGYNMKQVHKILKAAPVNNIRVVI 425
               +     ++L+        +V+
Sbjct: 66  FENMSNDDAVRVLRDIVHKPGPIVL 90

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 433 TVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
           TVTL+ +     G                I S++K  + A +G +     +L+VN  N  
Sbjct: 8   TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFE 67

Query: 483 GLKDKE----LLEAMEKGGSVLTLTL 504
            + + +    L + + K G +  LT+
Sbjct: 68  NMSNDDAVRVLRDIVHKPGPI-VLTV 92

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 30/169 (17%)

Query: 369 EGVFVCLVERGSPASLVGLR-FGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           EG  V  V+  SP    GL  F D I+SING  +   N   +  +LKA     ++++I  
Sbjct: 16  EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDND-TLKDLLKANVEKPVKMLIYS 74

Query: 428 RPLERTVTLH------RDSSGHFGFHF----------NKGQIVSLVKDSSAARNGLLVNH 471
                               G  G             N   ++ +  +S AA  GL  + 
Sbjct: 75  SKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHS 134

Query: 472 N-ILEVNGANVVGLKDKELLEAME-----------KGGSVLTLTLIPTS 508
           + I+  +           L+E  E              +   + + P S
Sbjct: 135 DYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNS 183

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 344 TNGIRELVLCKDASGLIGLRVC------AINEGVFVCLVERGSPASLVG-LRFGDQILSI 396
           +   + + + KD    +G+ V         +  ++V  VE G   S  G ++ GD +L++
Sbjct: 22  SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81

Query: 397 NGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           +G  +   +  +   +LK    + +   +  + 
Sbjct: 82  DGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLL-VNHNILEVNGA 479
           E+ V + +D     G     G           ++S+      +R+G +     +L V+G 
Sbjct: 25  EKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV 84

Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI 505
            +  +   E +  +++  S + L  +
Sbjct: 85  ELTEVSRSEAVALLKRTSSSIVLKAL 110

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 14/77 (18%), Positives = 26/77 (33%)

Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
            L  +          +  V  GSPA   GL+ G  I+ +NG+ +      ++ +      
Sbjct: 79  TLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQL 138

Query: 418 VNNIRVVIRDRPLERTV 434
              +   +     E T 
Sbjct: 139 QIGVYKEVVGEDGEVTG 155

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 355 DASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
                       +  G ++  V   +PA   GL+  D I+SING++V   +   V  ++K
Sbjct: 240 KELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIK 297

Query: 415 AAPVNNIRVVIRDRPLERTVTL 436
                N+ V   +  +  TV  
Sbjct: 298 RESTLNMVVRRGNEDIMITVIP 319

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 347 IRELVLCKDASGLIGLRVC-----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
              ++     +GL GL++           V++  V  G      G L+ GDQ++SIN E+
Sbjct: 15  AFRVITVTKETGL-GLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES 73

Query: 401 VAGYNMKQVHKILKAAPVNN----IRVVIRDRP 429
           + G + ++   I+  A + +        IR  P
Sbjct: 74  MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VIRD 427
           G++   V    PA    +  GD+I+S +G+     + +++   + +      + + + R+
Sbjct: 2   GIYASSVVENMPAK-GKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIERE 58

Query: 428 -RPLERTVTL 436
            +    T+TL
Sbjct: 59  EKEKRVTLTL 68

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIR 426
           ++G+FV  V+   PAS + L+ GD+I+  NG +       Q   +LK    N +  +++R
Sbjct: 34  DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVR 91

Query: 427 DRP 429
           +  
Sbjct: 92  EVS 94

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 432 RTVTLHRDSSGHFGF--------------HFNKGQIVSLVKDSSAARNGLLVNHNILEVN 477
             + +  +     GF                + G  V+ V+    A   L     I++ N
Sbjct: 3   MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQAN 62

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G + + ++  + +  ++   + + L +
Sbjct: 63  GYSFINIEHGQAVSLLKTFQNTVELII 89

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNG 478
             V L R      G                   + S++  S+A  NG + VN  I+ V+G
Sbjct: 17  YNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDG 76

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIP 506
            N+ G  + +++E +   G V+ LTL+ 
Sbjct: 77  VNIQGFANHDVVEVLRNAGQVVHLTLVR 104

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
             G++V  V  GS A   G ++  D+I++++G  + G+    V ++L+ A    + + + 
Sbjct: 45  ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAG-QVVHLTLV 103

Query: 427 DRPLERTVTLHRDSS 441
            R    + +     S
Sbjct: 104 RRKTSSSTSPLEPPS 118

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 347 IRELVLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           +    L K  SG +G  V           G+FV  ++ GS A   G L+  DQIL+ING+
Sbjct: 21  VEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQ 80

Query: 400 TVA-GYNMKQVHKILKAAPVNNIRVVIRDRPLER 432
            +      +Q   IL+ A  + +++VI    L +
Sbjct: 81  ALDQTITHQQAISILQKAK-DTVQLVIARGSLPQ 113

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 419 NNIRVVIRDRPLER---TVTLHRDSSGHFGFH------FNKGQ----IVSLVKDSSAARN 465
           +    +I++    R      L +  SG  GF        N+G+    +  + + S A R+
Sbjct: 6   DEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRD 65

Query: 466 G-LLVNHNILEVNGANV-VGLKDKELLEAMEKGGSVLTLTL 504
           G L     IL +NG  +   +  ++ +  ++K    + L +
Sbjct: 66  GRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI-R 426
           ++G+FV  V+   PAS + L+ GD+I+  NG +       Q   +LK    N + ++I R
Sbjct: 42  DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVR 99

Query: 427 DRP 429
           +  
Sbjct: 100 EVS 102

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 14/88 (15%)

Query: 431 ERTVTLHRDSSGHFGF--------------HFNKGQIVSLVKDSSAARNGLLVNHNILEV 476
           ++ + +  +     GF                + G  V+ V+    A   L     I++ 
Sbjct: 10  KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQA 69

Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
           NG + + ++  + +  ++   + + L +
Sbjct: 70  NGYSFINIEHGQAVSLLKTFQNTVELII 97

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 360 IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN 419
            G +  A  +G+ V  V     A   GL  GD+I++I+       ++K++ +        
Sbjct: 487 FGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYIPGDTV 546

Query: 420 NIRVVIRDRPLERTVTLH 437
            I    RD  +   +T  
Sbjct: 547 TIHAFRRDELMTLELTWQ 564

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
            +G+ V  V    PA+  G++  D I+S++ +     +  +    +        I V V+
Sbjct: 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVM 300

Query: 426 RD-RPLERTVTL 436
           RD + L   VT+
Sbjct: 301 RDDKQLTLQVTI 312

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 3/138 (2%)

Query: 51  AYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAP-IYPSAPPQESHSPYYYSDIRANV 109
            +++                    + P+     +AP ++PS  P        +S I    
Sbjct: 3   HHHHHHVDDDDKMFSTQVNSSL--TSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60

Query: 110 PTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQ 169
                  P +   S P  P+                    S  N + +     P      
Sbjct: 61  SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120

Query: 170 ASQASLPYPINPLASNKP 187
             +       N  +  K 
Sbjct: 121 VLKVPAHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 3/138 (2%)

Query: 66  PYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYP 125
            ++ H  V        F +        P    S    S   +  P  GSP   +   S  
Sbjct: 2   AHHHHHHVDDDD--KMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL 59

Query: 126 SNPYQAQNSYPSVPNQPQAPNTYPSMPN-QLQAPNGFYPLTSSQQASQASLPYPINPLAS 184
           S+P        SV + P  P++        L    G   L+S      +S         +
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119

Query: 185 NKPSAPQPPAYSVQPSHN 202
                P  P+ ++     
Sbjct: 120 GVLKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 22/141 (15%), Positives = 32/141 (22%), Gaps = 8/141 (5%)

Query: 14  HQLTIAQNEYFSKQTTSSSFSSP--PPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHP 71
           H   +  ++       +SS +SP     +   S H S       P   HS  P      P
Sbjct: 5   HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHS--PISTLSSP 62

Query: 72  SVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQA 131
                P      S    P  P   S             P   SP+           P   
Sbjct: 63  INGMGPPFSVISS----PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 132 QNSYPSVPNQPQAPNTYPSMP 152
                   +      ++    
Sbjct: 119 NGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 26/133 (19%), Positives = 38/133 (28%), Gaps = 5/133 (3%)

Query: 1   MSSIYPSLEDMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYH 60
           M+  +    D      +   N   +  T   S ++P           SP   ++P S   
Sbjct: 1   MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60

Query: 61  S-----ANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSP 115
           S       P      P  P   SVPT P+      +P   S      S      P G + 
Sbjct: 61  SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120

Query: 116 VPSYPQGSYPSNP 128
           V   P     +  
Sbjct: 121 VLKVPAHPSGNMA 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 40/262 (15%), Positives = 71/262 (27%), Gaps = 67/262 (25%)

Query: 283 DNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAY 342
            NY        L++    E          +  T      RD       L +      K  
Sbjct: 89  INY------KFLMSPIKTEQ------RQPSMMTRMYIEQRD------RLYNDNQVFAKYN 130

Query: 343 VTNGIRELVLCKDASGLIGLRVCAINEGVFV---------CLVERGSPASLVGLRFGDQI 393
           V+   R     K    L+ LR     + V +          +      +  V  +   +I
Sbjct: 131 VS---RLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 394 --LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKG 451
             L++        N      +L+   +  +   I      R       S+     H  + 
Sbjct: 185 FWLNLK-------NCNSPETVLE--MLQKLLYQIDPNWTSR---SDHSSNIKLRIHSIQA 232

Query: 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT-------- 503
           ++  L+K      N LL    +L     NV   ++ +   A      +L  T        
Sbjct: 233 ELRRLLKSKPY-ENCLL----VLL----NV---QNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 504 LIPTSMYQHMMKKMSFNLVKDK 525
           L   +     +   S  L  D+
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE 302

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 318 RQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGL--------IGLRVCAINE 369
               R +  +    +S+   L+K      +  + L KD+ GL         G  +     
Sbjct: 52  EDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKL 111

Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           G+FV  V  G  A   G ++  D ++ ++G ++ G        +L+      +R +I 
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIG 168

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 15/86 (17%)

Query: 433 TVTLHRDSSGHFGFHFNKGQ-------------IVSLVKDSSAARNG-LLVNHNILEVNG 478
            V L +DS G  G                    + ++ +  +A R+G + VN  ++EV+G
Sbjct: 83  PVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 141

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++VG+        +      +   +
Sbjct: 142 TSLVGVTQSFAASVLRNTKGRVRFMI 167

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV-NNIRV-VI 425
             G FV  V  GS ++  G++ GD I S+NG+ +   +  ++   +        +++ ++
Sbjct: 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLL 319

Query: 426 RD-RPLERTVTL 436
           R+ +PLE  VTL
Sbjct: 320 RNGKPLEVEVTL 331

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 332 SSSGSGLKKAYVTNG---------IRELVLCKDASGLIGLRVCA-------INEGVFVCL 375
           SS  SGLK                  E+ L    S  +G+ +          + G+F+  
Sbjct: 2   SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 376 VERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA------PVNNIRVVIRDR 428
           +  G  A   G LR  DQ++++NGET+ G +  +  + L+ +          I++VI  R
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

Query: 429 P 429
            
Sbjct: 122 S 122

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 12/103 (11%)

Query: 413 LKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGF------HFNKGQ-----IVSLVKDSS 461
           LK  P      +     L   + L+   S   G           G      I S++   +
Sbjct: 8   LKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGA 67

Query: 462 AARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT 503
           A ++G L +N  ++ VNG  ++G  + E +E + +  S+    
Sbjct: 68  AFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNI 110

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT 435
           V+  S AS  GL+ GD+I+ ++G+ +  +       +++  P  ++ + I  +    ++T
Sbjct: 11  VQPNSAASXAGLQAGDRIVXVDGQPLTQWV--TFVMLVRDNPGXSLALEIERQGSPLSLT 68

Query: 436 L 436
           L
Sbjct: 69  L 69

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 379 GSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE----RTV 434
           G PA   G R GD I++++G  V G ++  V  +L+    + + VV+   P      RT+
Sbjct: 109 GGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLH-APGAPSNTRTL 167

Query: 435 TLHRD 439
            L R 
Sbjct: 168 QLTRQ 172

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTV 434
           +   S A+   +  G ++ +++G     ++  ++  + K       I V        R V
Sbjct: 9   IAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDV 68

Query: 435 TL 436
            L
Sbjct: 69  KL 70

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 358 GLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA 415
             +G++V       G  +  V  G  A+  G+  G  +  ++   +   +      +   
Sbjct: 229 ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVA-AVRSK 287

Query: 416 APVNNIRV-VIRD--RPLERTVTL 436
           AP   + +             VTL
Sbjct: 288 APGATVALTFQDPSGGSRTVQVTL 311

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRV-VIR 426
            G  V   +       +GL+ GD  +++NG  +   +   ++ + ++   +  + + V R
Sbjct: 37  LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVER 94

Query: 427 D-RPLERTVTL 436
           D +  +  +  
Sbjct: 95  DGQQHDVYIQF 105

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Length = 87

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRV-VIR 426
            G  V   +       +GL+ GD  +++NG  +   +   ++ + ++   +  + + V R
Sbjct: 19  LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVER 76

Query: 427 D-RPLERTVTL 436
           D +  +  +  
Sbjct: 77  DGQQHDVYIQF 87

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRVVIRD 427
           +GV +  V  GSPAS V L  G  I SING   +  N+      LK   V   I +    
Sbjct: 25  DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQ 81

Query: 428 RPLERTVTLHRDSSG 442
                    + ++S 
Sbjct: 82  GTFHLKTGRNPNNSS 96

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Length = 348

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 16/82 (19%)

Query: 369 EGVFVCLVERGSPASLVGLR-----------FGDQILSINGETVAGYNMKQVHKILKAAP 417
            GV V       PA   GL+            GD I S+NG  V+  N   +++IL    
Sbjct: 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCK 308

Query: 418 V-NNIRV-VIRD-RPLERTVTL 436
           V + + V V+R     + +VTL
Sbjct: 309 VGDEVTVEVLRGDHKEKISVTL 330

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens} Length = 101

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query: 343 VTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVA 402
           V N + + +L        G  +   N+ V V  V+RGS A + GL+ G +I SIN + V 
Sbjct: 13  VENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVF 72

Query: 403 GYNMKQVHKILK 414
                +V  IL 
Sbjct: 73  LRPFSEVESILN 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.93
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.9
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.9
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.89
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.88
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.87
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.87
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.85
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.83
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.79
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.79
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.75
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.74
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.55
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.5
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.44
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.4
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.39
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.38
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.36
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.35
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.35
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.35
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.35
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.33
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.33
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.32
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.32
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.31
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.31
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.3
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.3
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.3
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.29
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.29
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.29
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.29
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.28
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.28
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.28
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.28
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.28
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.27
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.27
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.27
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.26
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.26
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.26
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.26
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.26
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.26
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.25
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.25
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.25
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.25
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.25
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.25
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.25
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.25
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.24
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.24
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.24
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.24
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.24
2ego_A	96	General receptor for phosphoinositides 1- associat	99.24
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.24
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.24
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.24
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.23
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.23
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.23
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.23
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.23
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.22
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.22
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.22
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.22
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.22
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.22
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.22
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.21
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.21
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.21
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.21
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.21
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.21
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.21
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.2
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.2
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.2
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.2
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.2
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.2
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.19
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.19
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.19
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.19
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.19
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.19
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.19
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.18
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.18
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.18
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.18
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.18
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.18
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.18
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.18
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.18
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.17
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.17
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.17
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.17
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.17
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.17
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.17
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.16
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.16
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.16
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.16
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.16
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.15
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.15
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.15
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.15
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.14
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.14
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.13
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.13
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.13
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.13
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.13
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.12
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.12
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.12
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.12
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.12
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.12
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.12
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.12
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.12
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.12
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.12
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.11
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.11
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.11
2ego_A	96	General receptor for phosphoinositides 1- associat	99.11
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.1
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.1
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.1
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.1
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.1
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.09
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.09
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.09
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.09
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.08
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.08
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.08
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.08
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.08
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.07
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.07
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.07
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.07
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.07
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.06
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.06
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.06
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.05
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.05
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.04
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.04
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.04
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.04
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.04
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.04
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.03
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.03
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.03
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.03
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.02
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.02
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.02
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.02
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.02
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.02
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.01
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.01
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.01
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.01
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.01
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.01
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.0
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.0
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.0
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.0
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.0
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.0
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.0
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.99
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.99
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.99
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.99
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.99
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.99
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.99
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.99
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.99
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.99
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.98
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.98
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.98
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.98
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.98
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.98
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.98
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.97
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.97
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.97
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.97
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.97
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.97
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.97
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.96
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.96
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.96
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.96
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.96
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.96
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.96
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.95
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.95
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.95
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.95
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.94
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.94
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.94
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.94
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.94
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.94
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.94
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.93
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.93
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.93
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.92
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.92
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.92
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.92
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.92
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.92
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.92
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.91
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.91
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.91
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.91
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.91
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.9
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.9
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.9
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.9
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.9
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.9
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.42
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.89
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.89
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.89
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.89
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.89
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.89
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.88
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.88
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.88
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.88
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.88
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.87
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.87
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.87
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.87
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.87
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.86
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.86
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.86
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.86
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.85
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.85
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.85
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.84
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.84
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.84
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.84
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.84
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.83
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.83
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.83
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.82
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.82
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.82
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.82
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.81
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.81
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.81
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.81
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.81
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.81
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.81
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.8
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.8
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.8
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.79
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.79
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.79
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.79
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.78
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.78
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.77
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.75
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.74
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.73
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.72
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.72
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.72
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.71
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.71
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.7
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.69
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.68
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.67
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.66
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.65
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.64
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.06
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.61
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.61
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.61
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.59
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.59
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.56
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.56
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.54
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.51
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.51
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.51
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.5
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.4
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.37
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.37
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.34
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.28
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.26
3k50_A	403	Putative S41 protease; structural genomics, joint	98.25
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.21
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.13
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.13
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.04
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.03
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.02
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.0
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.99
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	97.94
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.91
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.89
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.87
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.84
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.81
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.81
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.73
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.73
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.48
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.48
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.47
3k50_A	403	Putative S41 protease; structural genomics, joint	97.16
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.05
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.59
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.5
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	87.18

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.93  E-value=1e-24  Score=200.11  Aligned_cols=162  Identities=57%  Similarity=0.970  Sum_probs=149.1

Q ss_pred             ccceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      ..|.|.++|..+++|||.+...+.|++|..|.++|+|++|||+.||+|++|||+.+.++.++....+++...++.+.|+|
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~v   83 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI   83 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             CCEEEEEEeCCCCcEeEEEEeCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEE
Confidence            46789999999999999999988999999999999999999999999999999999999986778888887788999999


Q ss_pred             ecCCceeeEEeccCCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         426 RDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       426 rR~~~e~tVtL~kd~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      +|+++++++++.++....|||.+..|.|..+.++++|+++||+.||+|++|||+++.++.++++...++|+++.+.+++.
T Consensus        84 r~~~~~~~v~l~~~~~~~lG~~~~~g~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~  163 (166)
T 1w9e_A           84 RDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM  163 (166)
T ss_dssp             ECCTTCEEEEEECCTTSCCSEEEETTEEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             EcCCCcEEEEEecCCCCcEeEEEeCCEEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence            76668899999877677799999888899999999999999999999999999999999999999999999999999988


Q ss_pred             eC
Q psy9257         506 PT  507 (530)
Q Consensus       506 p~  507 (530)
                      +.
T Consensus       164 ~~  165 (166)
T 1w9e_A          164 PA  165 (166)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.90  E-value=2.3e-24  Score=228.36  Aligned_cols=210  Identities=20%  Similarity=0.260  Sum_probs=166.6

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA  366 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~  366 (530)
                      ++.||    +++++++|++++++++..|+..+++..+..-+|+..|++||++.+.++.+..     ++..++|||+.+..
T Consensus       191 ~~~iq----tda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~r~~lGv~~~~  266 (451)
T 3pv2_A          191 ENFIQ----TDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQH  266 (451)
T ss_dssp             -CCEE----ESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHSSCCCCBCCEEEEE
T ss_pred             ceEEE----EecccCCCCCcCcccCCCCeEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHHhcCCcccccccceEEe
Confidence            34466    8999999999999999888988886655554677889999998776665543     46778999999987


Q ss_pred             cC-------------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHH-hCCCCeEEEEEecCCcee
Q psy9257         367 IN-------------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLER  432 (530)
Q Consensus       367 ~~-------------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk-~a~G~~VtLtVrR~~~e~  432 (530)
                      .+             .|++|..|.++|+|+++||+.||+|++|||+.|.++.+  +..++. ...++.|.|+|.|+++++
T Consensus       267 ~~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~--l~~~l~~~~~g~~v~l~V~R~g~~~  344 (451)
T 3pv2_A          267 LTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQ--VKTTISLLRVGSTVKIIVERDNKPL  344 (451)
T ss_dssp             CCHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH--HHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             ccHHHHHhcCCCcCCceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEE
Confidence            43             79999999999999999999999999999999999755  555555 466899999999998888


Q ss_pred             eEEeccCC------------CCccceeec------------cC-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChH
Q psy9257         433 TVTLHRDS------------SGHFGFHFN------------KG-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDK  487 (530)
Q Consensus       433 tVtL~kd~------------~g~LGfs~~------------~G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~e  487 (530)
                      ++++....            ...+|+.+.            .| .|.+|.++|+|+++||+.||+|++|||++|.++  +
T Consensus       345 ~~~v~l~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~  422 (451)
T 3pv2_A          345 TLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--K  422 (451)
T ss_dssp             EEEEECBCHHHHHHHHHHHSTTTTTEEEEEEEEECTTSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--H
T ss_pred             EEEEEEccCCccccccccccccccccccccCChhHhcccCCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--H
Confidence            77654221            123455543            23 388999999999999999999999999999987  6


Q ss_pred             HHHHHHHhCCCEEEEEEEeCcc
Q psy9257         488 ELLEAMEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       488 eVv~iLkrsG~tVtLtVip~~~  509 (530)
                      ++..++++.++.+.|+|.|...
T Consensus       423 ~~~~~l~~~~~~v~l~v~R~g~  444 (451)
T 3pv2_A          423 SLQTIAQEKKKELLVQVLRGPG  444 (451)
T ss_dssp             HHHHHTTSSCSCEEEEEEETTE
T ss_pred             HHHHHHhcCCCeEEEEEEECCE
Confidence            7888888888899999988764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.90  E-value=1.8e-23  Score=220.18  Aligned_cols=210  Identities=22%  Similarity=0.297  Sum_probs=168.7

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA  366 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~  366 (530)
                      ++.||    +++++++|++++++++..|+..++...+..-+|+..|++||++.+.++.+..     ++..++|||+.+..
T Consensus       173 ~~~iq----~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~r~~lGv~~~~  248 (436)
T 4a8c_A          173 ENFIQ----TDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTE  248 (436)
T ss_pred             cCEEE----EcCccCCCCCcCcccCCCCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHHhccccccccCceEecc
Confidence            45566    8999999999999999888999987666655777899999998766665442     56678999999875


Q ss_pred             cC------------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHH-hCCCCeEEEEEecCCceee
Q psy9257         367 IN------------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLERT  433 (530)
Q Consensus       367 ~~------------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk-~a~G~~VtLtVrR~~~e~t  433 (530)
                      .+            .|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +..++. ...++.|.|+|.|++++++
T Consensus       249 ~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~  326 (436)
T 4a8c_A          249 MSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNGKPLE  326 (436)
T ss_pred             cCHHHHHHhCCCCCcceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            32            78999999999999999999999999999999999865  444444 4567899999999888777


Q ss_pred             EEeccCCC---------Ccccee---ec--------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257         434 VTLHRDSS---------GHFGFH---FN--------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       434 VtL~kd~~---------g~LGfs---~~--------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      +++.....         ..+|+.   +.        .|. |.+|.++++|+++||+.||+|++|||+++.++  +++..+
T Consensus       327 ~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~  404 (436)
T 4a8c_A          327 VEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKV  404 (436)
T ss_pred             EEEEECCCCcccccccccccCceeeecccccccCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHH
Confidence            66542111         113333   21        243 88999999999999999999999999999987  679999


Q ss_pred             HHhCCCEEEEEEEeCcc
Q psy9257         493 MEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       493 LkrsG~tVtLtVip~~~  509 (530)
                      ++..++.+.|+|.|...
T Consensus       405 l~~~~~~v~l~v~R~g~  421 (436)
T 4a8c_A          405 LAAKPAIIALQIVRGNE  421 (436)
T ss_pred             HHhCCCeEEEEEEECCE
Confidence            98877899999988764

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.89  E-value=4.6e-22  Score=183.36  Aligned_cols=161  Identities=20%  Similarity=0.325  Sum_probs=135.2

Q ss_pred             cceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      .+++.+.+.. .+|||++..+        ..|++|..|.++|+|+++| |+.||+|++|||+.+.++++..+..+++. .
T Consensus         6 ~~~v~l~~~~-~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~   83 (196)
T 3gsl_A            6 YEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-A   83 (196)
T ss_dssp             EEEEEEECBT-TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-S
T ss_pred             EEEEEEEECC-CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-C
Confidence            4567777764 4599999874        3589999999999999999 99999999999999999999877777765 4


Q ss_pred             CCeEEEEEecCC----ceeeEEeccCCCCccceeecc-----------C-cEEEEccCCHHHHcC-CCCCCEEEEEcCee
Q psy9257         418 VNNIRVVIRDRP----LERTVTLHRDSSGHFGFHFNK-----------G-QIVSLVKDSSAARNG-LLVNHNILEVNGAN  480 (530)
Q Consensus       418 G~~VtLtVrR~~----~e~tVtL~kd~~g~LGfs~~~-----------G-vV~sVv~gSpAarAG-Lr~GDrILeVNGq~  480 (530)
                      +..+.|+|.|++    ..+++++.+... .+||.+..           | .|..|.++|+|+++| |+.||+|++|||++
T Consensus        84 g~~v~l~v~r~~~~~~~~~~v~l~~~~~-~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~  162 (196)
T 3gsl_A           84 GSIVRLYVMRRKPPAEKVMEIKLIKGPK-GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG  162 (196)
T ss_dssp             CSEEEEEEEEECCCCEEEEEEEEEEBTT-BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE
T ss_pred             CCcEEEEEEecCCCccccEEEEEecCCC-CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCc
Confidence            788999998754    234556655544 58998853           2 388999999999999 99999999999999


Q ss_pred             cCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         481 VVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       481 V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      |.+++.+++..++++.++.+.|+|.|....
T Consensus       163 v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  192 (196)
T 3gsl_A          163 LEDVMHEDAVAALKNTYDVVYLKVAKPSNA  192 (196)
T ss_dssp             CSSCBHHHHHHHHHSCCEEEEEEEEEESCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence            999888999999998899999999886543

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.88  E-value=1.5e-21  Score=182.92  Aligned_cols=162  Identities=16%  Similarity=0.231  Sum_probs=134.9

Q ss_pred             eEEEeccCCCeeEEEEEecC-----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCC--cCHHHHHHHHHhCCCCe
Q psy9257         349 ELVLCKDASGLIGLRVCAIN-----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG--YNMKQVHKILKAAPVNN  420 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~-----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g--~s~~~v~~LLk~a~G~~  420 (530)
                      .+.+.+. ..+|||.+..+.     .|++|..|.++|+|+++| |+.||+|++|||+.+.+  +++.++..+++...+..
T Consensus        21 ~v~~~~~-~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~   99 (206)
T 3r0h_A           21 LIELKVE-KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKA   99 (206)
T ss_dssp             EEEEECT-TSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSE
T ss_pred             EEEEEeC-CCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCc
Confidence            4555554 567999998632     589999999999999999 99999999999999999  77888888887655444


Q ss_pred             EEEEEecCCc----eeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHH
Q psy9257         421 IRVVIRDRPL----ERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLE  491 (530)
Q Consensus       421 VtLtVrR~~~----e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~  491 (530)
                      +.|+|.|++.    .+++.+.+.....|||.+..   |. |.+|.++|+|+++| |+.||+|++|||++|.+++++++..
T Consensus       100 v~l~v~R~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~  179 (206)
T 3r0h_A          100 VTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA  179 (206)
T ss_dssp             EEEEEECCSSCCEEEEEEEEECCTTCCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEEecccCCCcEEEEEEecCCCCccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            9999988654    34556666665679999863   33 89999999999999 9999999999999999999899999


Q ss_pred             HHHhCCCEEEEEEEeCcchh
Q psy9257         492 AMEKGGSVLTLTLIPTSMYQ  511 (530)
Q Consensus       492 iLkrsG~tVtLtVip~~~~e  511 (530)
                      +++..++.+.|+|.|.....
T Consensus       180 ~l~~~~~~v~L~V~R~~~~~  199 (206)
T 3r0h_A          180 LFKGANGKVSMEVTRPKPTL  199 (206)
T ss_dssp             HHHTCCSEEEEEEEEECCCC
T ss_pred             HHHcCCCeEEEEEEeCCCCC
Confidence            99998999999998865433

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.87  E-value=3.5e-21  Score=180.65  Aligned_cols=162  Identities=19%  Similarity=0.342  Sum_probs=139.1

Q ss_pred             cceEEEeccCCCeeEEEEEec-------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-  417 (530)
                      .++|.+.++...+|||++...       ..+++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++... 
T Consensus         7 ~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   86 (196)
T 1p1d_A            7 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI   86 (196)
T ss_dssp             EEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCS
T ss_pred             EEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            456778888778899999975       3579999999999999999 9999999999999999876777888888765 


Q ss_pred             CCeEEEEEecCCc--------eeeEEeccCCCCccceeecc--------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCe
Q psy9257         418 VNNIRVVIRDRPL--------ERTVTLHRDSSGHFGFHFNK--------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGA  479 (530)
Q Consensus       418 G~~VtLtVrR~~~--------e~tVtL~kd~~g~LGfs~~~--------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq  479 (530)
                      +..+.|+|.|+++        .+++.+.++....|||.+..        |. |..|.++++|+++| |+.||+|++|||+
T Consensus        87 g~~v~l~v~R~~~~~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~  166 (196)
T 1p1d_A           87 TSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNI  166 (196)
T ss_dssp             SSEEEEEEEECSCSCCBCCSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTE
T ss_pred             CCeEEEEEEecCCCCCCCCCCcEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCE
Confidence            7899999988763        45677776556679998853        33 88999999999999 9999999999999


Q ss_pred             ecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         480 NVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       480 ~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      ++.+++.+++..++++.++.+.|+|.|..
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          167 RLDSCSMEDAVQILQQCEDLVKLKIRKDE  195 (196)
T ss_dssp             EGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             ECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            99998788999999987999999998753

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.87  E-value=1.2e-20  Score=176.92  Aligned_cols=161  Identities=24%  Similarity=0.348  Sum_probs=135.3

Q ss_pred             ccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      +.+.+.+.+...++|||.+...   ..|++|..|.++|+|+++ ||+.||+|++|||+.+.++++.++..+++. .++.|
T Consensus         7 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v   85 (200)
T 2qt5_A            7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERV   85 (200)
T ss_dssp             EEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEE
T ss_pred             CCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeE
Confidence            3456777777778899999864   367999999999999999 899999999999999999988888888865 47889


Q ss_pred             EEEEecCC------------ceeeEEeccCCCCccceeeccC-----------cEEEEccCCHHHHcC-CCCCCEEEEEc
Q psy9257         422 RVVIRDRP------------LERTVTLHRDSSGHFGFHFNKG-----------QIVSLVKDSSAARNG-LLVNHNILEVN  477 (530)
Q Consensus       422 tLtVrR~~------------~e~tVtL~kd~~g~LGfs~~~G-----------vV~sVv~gSpAarAG-Lr~GDrILeVN  477 (530)
                      .|+|.|+.            +++++++.+. ...|||.+.+|           .|..|.++++|+++| |+.||+|++||
T Consensus        86 ~l~v~R~~~~~~~~g~~~~~~~~~v~l~~~-~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~in  164 (200)
T 2qt5_A           86 VLEVEYELPPVSIQGSSVMFRTVEVTLHKE-GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD  164 (200)
T ss_dssp             EEEEEEECCCCCCCCSSEEEEEEEEEEECB-TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEET
T ss_pred             EEEEeccCCCcccCCCccceeEEEEEEecC-CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEEC
Confidence            99998754            3455565543 35589986532           288999999999999 99999999999


Q ss_pred             CeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         478 GANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       478 Gq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      |+++.+++.+++..+|+..++.+.|+|.|..
T Consensus       165 g~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (200)
T 2qt5_A          165 GIRLLGTTHAEAMSILKQCGQEATLLIEYDV  195 (200)
T ss_dssp             TEECTTCCHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred             CEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            9999988889999999988899999998754

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.85  E-value=1.5e-22  Score=210.67  Aligned_cols=175  Identities=27%  Similarity=0.482  Sum_probs=75.6

Q ss_pred             ccccceEEEeccCCCeeEEEEEecCC-----cEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC-
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAINE-----GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA-  416 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~~~-----GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a-  416 (530)
                      ....++|.+.+..+.+|||.+.....     |++|..|.+||+|+++| |+.||+|++|||+.+.+|++.++..+++.. 
T Consensus       202 ~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  281 (388)
T 3suz_A          202 SENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK  281 (388)
T ss_dssp             SSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCT
T ss_pred             cccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhcc
Confidence            34467788888777789999886443     48999999999999999 999999999999999999877788888765 


Q ss_pred             CCCeEEEEEecCCceeeEEec-cCCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         417 PVNNIRVVIRDRPLERTVTLH-RDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       417 ~G~~VtLtVrR~~~e~tVtL~-kd~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      .+..+.|+|.|.+..+++++. ++..+.|||.+.+|.|..|.++|+|+++||+.||+|++|||++|.+++++++..+|++
T Consensus       282 ~~~~v~l~v~r~~~~~~v~l~~~~~~~~lG~~i~~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~  361 (388)
T 3suz_A          282 NQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN  361 (388)
T ss_dssp             TCSCEEEEEEECCSCC----------------------------------------------------------------
T ss_pred             CCCccccccccccccceeeEeecCCCCccceEEecCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            456799999998888888873 4455679999988999999999999999999999999999999999988999999999


Q ss_pred             CCCEEEEEEEeCcchhhhhhccC
Q psy9257         496 GGSVLTLTLIPTSMYQHMMKKMS  518 (530)
Q Consensus       496 sG~tVtLtVip~~~~e~m~kkLs  518 (530)
                      .++.+.|+|++...++.+..+..
T Consensus       362 ~~~~v~L~V~p~~~~~lltg~~~  384 (388)
T 3suz_A          362 SVGEIHMKTMPAAMFRLLTGQET  384 (388)
T ss_dssp             ---------------------CC
T ss_pred             CCCeEEEEEEeccccccccCCCC
Confidence            99999999999988887766543

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.83  E-value=3.8e-23  Score=218.94  Aligned_cols=210  Identities=21%  Similarity=0.269  Sum_probs=113.2

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA  366 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~  366 (530)
                      .+.||    +++++++|++++++++..|+..+++..+..-+|+..|++||++.+.++.+..     ++..++|||+.+..
T Consensus       196 ~~~iq----tda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~~~~LGv~~~~  271 (448)
T 1ky9_A          196 ENFIQ----TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTE  271 (448)
T ss_dssp             CCCEE----ESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHHHSSCCBCCCCCSCCC
T ss_pred             cCEEE----EcCCCCCCCCCCeeECCCCEEEEEEEEeecCCCCccceeeeeecccchhhHHHHhhhcccceecccccccc
Confidence            34566    8999999999999999888888887665554677899999998776665432     45678899998875


Q ss_pred             cC------------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceee
Q psy9257         367 IN------------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERT  433 (530)
Q Consensus       367 ~~------------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~t  433 (530)
                      .+            .|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +..++.. ..++.|.|+|.|++++++
T Consensus       272 ~~~~~a~~lgl~~~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~  349 (448)
T 1ky9_A          272 LNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLTLGLLRDGKQVN  349 (448)
T ss_dssp             TTSHHHHTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHH--HHHHTTSSBTTCCCEEEEESSSCEEE
T ss_pred             ccHHHHHHhCCCCCCceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            32            69999999999999999999999999999999999855  5555543 467899999999888776


Q ss_pred             EEeccCC------------CCccceeec-----cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         434 VTLHRDS------------SGHFGFHFN-----KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       434 VtL~kd~------------~g~LGfs~~-----~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      +++....            ...+|+.+.     .|. |..|.++++|+++||+.||+|++|||+.+.++  +++..++++
T Consensus       350 ~~v~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~  427 (448)
T 1ky9_A          350 VNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDS  427 (448)
T ss_dssp             CCCC----------------------------------------------------------------------------
T ss_pred             EEEEEecCCCcccccccccccccceEeeccCCCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHc
Confidence            6554211            122477663     343 88999999999999999999999999999977  467888876


Q ss_pred             CCCEEEEEEEeCcc
Q psy9257         496 GGSVLTLTLIPTSM  509 (530)
Q Consensus       496 sG~tVtLtVip~~~  509 (530)
                      ..+.+.|+|.|...
T Consensus       428 ~~~~v~l~v~R~g~  441 (448)
T 1ky9_A          428 KPSVLALNIQRGDS  441 (448)
T ss_dssp             --------------
T ss_pred             CCCeEEEEEEECCE
Confidence            55688888887653

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.79  E-value=1.5e-18  Score=193.14  Aligned_cols=159  Identities=20%  Similarity=0.334  Sum_probs=136.3

Q ss_pred             ceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         348 RELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      ++|.+.++. ++|||.+.++        +.|++|..|.+||+|+++| |+.||+|++|||+.+.++++.++..+++. .+
T Consensus        61 ~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g  138 (721)
T 2xkx_A           61 EEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AG  138 (721)
T ss_pred             EEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cc
Confidence            467777765 5799999863        4679999999999999999 99999999999999999998888888865 47


Q ss_pred             CeEEEEEecCC----ceeeEEeccCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeec
Q psy9257         419 NNIRVVIRDRP----LERTVTLHRDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANV  481 (530)
Q Consensus       419 ~~VtLtVrR~~----~e~tVtL~kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V  481 (530)
                      ..|.|+|+|++    ..++++|.++.. .|||.+.+           |. |..|.++++|+++| |+.||+|++|||++|
T Consensus       139 ~~v~l~v~R~~~~~~~~~~v~l~k~~~-~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v  217 (721)
T 2xkx_A          139 SIVRLYVMRRKPPAEKVMEIKLIKGPK-GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL  217 (721)
T ss_pred             cccceEEEecccccccceeeeeeeecC-CCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeC
Confidence            88999998865    346778877643 48998864           23 88999999999999 999999999999999


Q ss_pred             CCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257         482 VGLKDKELLEAMEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       482 ~gls~eeVv~iLkrsG~tVtLtVip~~~  509 (530)
                      .++++.++..+++..++.+.|+|.|...
T Consensus       218 ~~~~~~~~~~~l~~~~~~v~l~V~R~g~  245 (721)
T 2xkx_A          218 EDVMHEDAVAALKNTYDVVYLKVAKPSN  245 (721)
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            9999888999998888999999988653

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.79  E-value=1.5e-19  Score=196.13  Aligned_cols=203  Identities=17%  Similarity=0.120  Sum_probs=154.8

Q ss_pred             HHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccC-CCeeEEEEEec
Q psy9257         294 LINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDA-SGLIGLRVCAI  367 (530)
Q Consensus       294 ~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s-~G~LG~~V~~~  367 (530)
                      .||    +|+++++||+++++++..|+..|++.++.. +++..||+||++.+.++.+..     ++.. ++|||+.+...
T Consensus       188 ~IQ----tDAaInpGnSGGPLvn~~GeVIGIntai~~-~~~~~gigfAIP~~~v~~vl~~l~~~G~~~~r~~LGv~~~~~  262 (539)
T 4fln_A          188 GIQ----IDAAINPGNSGGPAFNDQGECIGVAFQVYR-SEETENIGYVIPTTVVSHFLTDYERNGKYTGYPCLGVLLQKL  262 (539)
T ss_dssp             EEE----ESSCCCTTTTTSEEECSSSCEEEEECCCC------CCCEEEEEHHHHHHHHHHHHTTTSCCCCCBCCEEEEEC
T ss_pred             EEE----EEeEecCCCccchhccCCCcEEEEEEEEec-CCCCCcceecccHHHHHHHHHHHHHcCeEEeeeecceEEEec
Confidence            367    999999999999999999999999776664 556679999998887776652     3333 78999999863


Q ss_pred             -------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCH---------HHHHHHHHhCCCCeEEEEE
Q psy9257         368 -------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM---------KQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       368 -------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~---------~~v~~LLk~a~G~~VtLtV  425 (530)
                                   ..|++|..|.++|||+++ |+.||+|++|||+.|.+..+         .....+.....|++|+|+|
T Consensus       263 ~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v  341 (539)
T 4fln_A          263 ENPALRECLKVPTNEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGI  341 (539)
T ss_dssp             CCHHHHHHHTCSSSBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEE
T ss_pred             CCHHHHHhcCCCCcCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEE
Confidence                         269999999999999886 99999999999999976432         1123344456789999999


Q ss_pred             ecCCceeeEEeccCC----------------CCccceeec---------------------------------cCc-EEE
Q psy9257         426 RDRPLERTVTLHRDS----------------SGHFGFHFN---------------------------------KGQ-IVS  455 (530)
Q Consensus       426 rR~~~e~tVtL~kd~----------------~g~LGfs~~---------------------------------~Gv-V~s  455 (530)
                      .|+++++++++.-..                ....|+.|.                                 .|+ |..
T Consensus       342 ~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gVvvs~  421 (539)
T 4fln_A          342 IRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQ  421 (539)
T ss_dssp             EETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCSSTTCCCEEEEE
T ss_pred             EECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHHHhhcccccCceeeehhhhhhhccCCceEEEEEE
Confidence            999988877653210                112455442                                 123 788


Q ss_pred             EccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCC-CEEEEEE
Q psy9257         456 LVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGG-SVLTLTL  504 (530)
Q Consensus       456 Vv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG-~tVtLtV  504 (530)
                      |.++++|...|++.||+|++|||++|.++  +++.++|+++. +.+.+.+
T Consensus       422 V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          422 VLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             ECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEE
T ss_pred             ecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEE
Confidence            99999999999999999999999999998  57999998654 4555554

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.75  E-value=1.3e-17  Score=159.26  Aligned_cols=138  Identities=24%  Similarity=0.302  Sum_probs=113.3

Q ss_pred             CCcEEEEEeccCCHhhhcCCCCC-CEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC--CceeeEEeccC----C
Q psy9257         368 NEGVFVCLVERGSPASLVGLRFG-DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR--PLERTVTLHRD----S  440 (530)
Q Consensus       368 ~~GV~Vs~V~pGSPAakAGLq~G-DqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~--~~e~tVtL~kd----~  440 (530)
                      ..|++|..|.++|||++|||+.| |+|++|||+.+.++.+. ...+++...++.+.|+|.|.  .+.+++++...    .
T Consensus        15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~-~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~   93 (209)
T 3rle_A           15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT-LKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGG   93 (209)
T ss_dssp             SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSH-HHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSS
T ss_pred             CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHH-HHHHHhcCCCCEEEEEEEecCCceEEEEEEcccccccc
Confidence            47899999999999999999999 99999999999998873 45666677789999999875  45666666433    3


Q ss_pred             CCccceeec---------cCc-EEEEccCCHHHHcCCCC-CCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCc
Q psy9257         441 SGHFGFHFN---------KGQ-IVSLVKDSSAARNGLLV-NHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTS  508 (530)
Q Consensus       441 ~g~LGfs~~---------~Gv-V~sVv~gSpAarAGLr~-GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~  508 (530)
                      ...+|+.+.         .|+ |..|.++|+|+++||+. ||+|++|||+ +.++.  ++...+++ .++.+.|+|.|..
T Consensus        94 ~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~--~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A           94 QGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESE--DLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSS--CHHHHHHHTTTSCEEEEEEETT
T ss_pred             cCccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHH--HHHHHHHhCCCCeEEEEEEECC
Confidence            346888875         343 88999999999999999 9999999998 87774  57777775 4788999998865


Q ss_pred             c
Q psy9257         509 M  509 (530)
Q Consensus       509 ~  509 (530)
                      .
T Consensus       171 ~  171 (209)
T 3rle_A          171 T  171 (209)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.74  E-value=5.8e-17  Score=180.44  Aligned_cols=163  Identities=21%  Similarity=0.346  Sum_probs=129.6

Q ss_pred             eEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         349 ELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      .|.+.+. ..+|||.+..+        ..|++|..|.+||+|+++| |+.||+|++|||+.|.++++.++..+++.. +.
T Consensus       157 ~v~l~k~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~  234 (721)
T 2xkx_A          157 EIKLIKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YD  234 (721)
T ss_pred             eeeeeee-cCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcC-CC
Confidence            4455554 34489988753        4689999999999999999 999999999999999999887788888654 67


Q ss_pred             eEEEEEecCCcee--------------------------------------------------------------eEEec
Q psy9257         420 NIRVVIRDRPLER--------------------------------------------------------------TVTLH  437 (530)
Q Consensus       420 ~VtLtVrR~~~e~--------------------------------------------------------------tVtL~  437 (530)
                      .|.|+|.|++...                                                              .+.|.
T Consensus       235 ~v~l~V~R~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~l~  314 (721)
T 2xkx_A          235 VVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIH  314 (721)
T ss_pred             eEEEEEEeCCcccccCCCCCCCcccCCCCCcccccCCcccccccccccCCCCCCcccCCcccccccccccccceEEEEEE
Confidence            8999998755431                                                              11122


Q ss_pred             cCCCCccceeecc-----Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc-c
Q psy9257         438 RDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS-M  509 (530)
Q Consensus       438 kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~-~  509 (530)
                      +. ...|||.+.+     |+ |..|.++|+|+++| |+.||+|++|||++|.+++.+++..+|++.++.+.|+|.+.. .
T Consensus       315 ~~-~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~~  393 (721)
T 2xkx_A          315 RG-STGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE  393 (721)
T ss_pred             EC-CCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCchh
Confidence            22 2358998753     33 88999999999999 999999999999999999999999999988999999998764 3


Q ss_pred             hhhhh
Q psy9257         510 YQHMM  514 (530)
Q Consensus       510 ~e~m~  514 (530)
                      ++.+.
T Consensus       394 ~~~~~  398 (721)
T 2xkx_A          394 YSRFE  398 (721)
T ss_pred             hhhhh
Confidence            34443

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.55  E-value=1.8e-15  Score=155.27  Aligned_cols=141  Identities=20%  Similarity=0.266  Sum_probs=116.9

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA  366 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~  366 (530)
                      ++.||    +++++++|++++++++..|+..++......-+|+..|++||++.+.++.+..     ++..++|||+.+..
T Consensus       173 ~~~iq----~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~v~~~~lGv~~~~  248 (345)
T 3stj_A          173 ENFIQ----TDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTE  248 (345)
T ss_dssp             CCEEE----ECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHSSCCCEECCEEEEE
T ss_pred             cCEEE----EecccCCCcCccceeCCCCEEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHHhcccccccccceeeEe
Confidence            34566    8899999999999998888998887766665778899999998776665543     45678999999986


Q ss_pred             cC------------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceee
Q psy9257         367 IN------------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERT  433 (530)
Q Consensus       367 ~~------------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~t  433 (530)
                      .+            .|++|..|.++|||+++||+.||+|++|||+.|.++.+  +..++.. ..|+.|+|+|.|++++++
T Consensus       249 ~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~  326 (345)
T 3stj_A          249 MSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNGKPLE  326 (345)
T ss_dssp             CCHHHHHHTTCSCCSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCHHH--HHHHHHTSCTTCEEEEEEEETTEEEE
T ss_pred             ecHHHHHhcCCCCCceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            42            79999999999999999999999999999999998655  6666655 478999999999988877


Q ss_pred             EEecc
Q psy9257         434 VTLHR  438 (530)
Q Consensus       434 VtL~k  438 (530)
                      +++.-
T Consensus       327 ~~v~l  331 (345)
T 3stj_A          327 VEVTL  331 (345)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            76643

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.50  E-value=1e-13  Score=115.83  Aligned_cols=78  Identities=55%  Similarity=0.956  Sum_probs=74.3

Q ss_pred             ceeeEEeccCCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      ..++|+|.|+..+.|||.+++|.|..+.++++|+++||+.||+|++|||++|.++++++++.+|+..+.+++|+|+|.
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~g~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p~   81 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA   81 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             ceEEEEEEECCCCCeEEEEECCEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEeC
Confidence            567899999988889999999999999999999999999999999999999999999999999999999999999885

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.44  E-value=3e-13  Score=121.10  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=84.2

Q ss_pred             cceechhcccccceEEE-----eccCCCeeEEEEEec-----------------CCcEEEEEeccCCHhhhcCCCCCCEE
Q psy9257         336 SGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAI-----------------NEGVFVCLVERGSPASLVGLRFGDQI  393 (530)
Q Consensus       336 vGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~-----------------~~GV~Vs~V~pGSPAakAGLq~GDqI  393 (530)
                      .||+||++.+.++.+..     ++..++|||+.+...                 ..|++|..|.++|+|+ +||+.||+|
T Consensus         2 ~GigFAIP~~~~~~v~~~L~~~G~v~r~~LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~-aGL~~GD~I   80 (134)
T 2l97_A            2 EGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPAN-GHLEKYDVI   80 (134)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGG-TTSCSSCEE
T ss_pred             CcEEEEeEHHHHHHHHHHHHHcCCEeeeEeeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchH-HCCCCCCEE
Confidence            58999998888887653     456789999998753                 3689999999999999 999999999


Q ss_pred             EEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEEeccC
Q psy9257         394 LSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVTLHRD  439 (530)
Q Consensus       394 LaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVtL~kd  439 (530)
                      ++|||+.+.++.+  +..++... .++.++|+|.|+++++++++...
T Consensus        81 ~~inG~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  125 (134)
T 2l97_A           81 TKVDDKEIASSTD--LQSALYNHSIGDTIKITYYRNGKEETTSIKLN  125 (134)
T ss_dssp             EEETTEECCCHHH--HHHHHHHSSTTCEEEEEEEETTEEEEEEEECC
T ss_pred             EEECCEEcCCHHH--HHHHHHhCCCCCEEEEEEEECCEEEEEEEEEc
Confidence            9999999998754  55666554 68899999999998888877654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.40  E-value=9.1e-14  Score=142.05  Aligned_cols=135  Identities=20%  Similarity=0.222  Sum_probs=110.3

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEecC-------
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAIN-------  368 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~~-------  368 (530)
                      +++++++|++++++++..|+..++......-+|+..|++||++.+.++.+..     ++..+++||+.+....       
T Consensus       171 ~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g~~~~~~lGi~~~~~~~~~~~~~  250 (348)
T 3qo6_A          171 TDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFAPDQSVEQLGV  250 (348)
T ss_dssp             ECSCCCTTCTTCEEECTTSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHSSCCCEECCCEECCTTTTTTTTC
T ss_pred             EeCCcCCCCcHHHhhCCCCeEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhCCceeeeecCcEEccchhhhhcCC
Confidence            7889999999999988888888886665555666789999997766665443     5667899999987532       


Q ss_pred             CcEEEEEeccCCHhhhcCCCC-----------CCEEEEECCEEcCCcCHHHHHHHHH-hCCCCeEEEEEecCCceeeEEe
Q psy9257         369 EGVFVCLVERGSPASLVGLRF-----------GDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLERTVTL  436 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~-----------GDqILaING~~V~g~s~~~v~~LLk-~a~G~~VtLtVrR~~~e~tVtL  436 (530)
                      .|++|..|.++|||++|||+.           ||+|++|||+.|.++.+  +..++. ...|+.|+|+|.|+++++++++
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~d--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  328 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSD--LYRILDQCKVGDEVTVEVLRGDHKEKISV  328 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHH--HHHHHTTCCTTCEEEEEEECSSSEEEEEE
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHH--HHHHHHhCCCcCEEEEEEEECCEEEEEEE
Confidence            699999999999999999999           99999999999999855  566664 4568999999999988777665


Q ss_pred             c
Q psy9257         437 H  437 (530)
Q Consensus       437 ~  437 (530)
                      .
T Consensus       329 ~  329 (348)
T 3qo6_A          329 T  329 (348)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=113.44  Aligned_cols=98  Identities=20%  Similarity=0.316  Sum_probs=83.9

Q ss_pred             CCCccceechhcccccceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcC
Q psy9257         332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA  402 (530)
Q Consensus       332 SG~svGIgfAi~~~~Vr~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~  402 (530)
                      +|...+.+++......+.|.+.|.. .+|||++...        ..|++|..|.++++|+++| |+.||+|++|||+.|.
T Consensus         3 s~~~~~~g~~~~~~~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~   81 (120)
T 2eno_A            3 SGSSGMNGRVDYLVTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK   81 (120)
T ss_dssp             CCCCCCSSCCCEEEEEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECC
T ss_pred             CcccCcCCCCCCCCceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECC
Confidence            4556777888888888889998876 6799999973        4689999999999999999 9999999999999999


Q ss_pred             CcCHHHHHHHHHhCCCCeEEEEEecCCce
Q psy9257         403 GYNMKQVHKILKAAPVNNIRVVIRDRPLE  431 (530)
Q Consensus       403 g~s~~~v~~LLk~a~G~~VtLtVrR~~~e  431 (530)
                      ++.+.++..+++.. +..|.|+|.|+...
T Consensus        82 ~~~~~~~~~~~~~~-g~~v~l~v~R~~~~  109 (120)
T 2eno_A           82 NLLHQDAVDLFRNA-GYAVSLRVQHRLQV  109 (120)
T ss_dssp             SCCHHHHHHHHHHH-CSEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHcC-CCeEEEEEEeCCcC
Confidence            99987888888764 68899999886543

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.4e-12  Score=108.60  Aligned_cols=87  Identities=28%  Similarity=0.416  Sum_probs=75.6

Q ss_pred             cccccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      ....++.|.+.+...++|||.+...   ..|++|..|.++|+|+++||+.||+|++|||+.+.++...++..+++.  +.
T Consensus         7 ~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~   84 (100)
T 2eeh_A            7 GSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SS   84 (100)
T ss_dssp             CCCEECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CS
T ss_pred             CCCeEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CC
Confidence            4556778889898889999999976   479999999999999999999999999999999999887777777765  68


Q ss_pred             eEEEEEecCCce
Q psy9257         420 NIRVVIRDRPLE  431 (530)
Q Consensus       420 ~VtLtVrR~~~e  431 (530)
                      .+.|+|.|++++
T Consensus        85 ~v~l~v~R~g~~   96 (100)
T 2eeh_A           85 RLHMMVRRMGSG   96 (100)
T ss_dssp             SEEEEEEECSCC
T ss_pred             EEEEEEEECCcC
Confidence            899999987643

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.36  E-value=4.9e-13  Score=134.73  Aligned_cols=136  Identities=17%  Similarity=0.149  Sum_probs=105.3

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCC---CCccceechhcccccceEEE-----eccCCCeeEEEEEec-----
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLS---SSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAI-----  367 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvS---G~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~-----  367 (530)
                      +++++++|++++++++..|+..++......-+   +...|++|+++.+.++.+..     ++..+++||+.+...     
T Consensus       156 ~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~~~~~~lGi~~~~~~~~~~  235 (318)
T 1te0_A          156 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHA  235 (318)
T ss_dssp             ESSCCCTTTTTSEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHSSCCCEECCEEEEECSCCCS
T ss_pred             ECCCCCCCCCcCceECCCCeEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHHcCCcccccceeEeeecchhHH
Confidence            67888999998888887766666543322211   13578899997766665432     345688999999863     


Q ss_pred             -------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEecc
Q psy9257         368 -------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLHR  438 (530)
Q Consensus       368 -------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~k  438 (530)
                             ..|++|..|.++|||+++||+.||+|++|||+.+.++.+  +..+++. ..++.|.|+|+|+++++++++..
T Consensus       236 ~~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~  312 (318)
T 1te0_A          236 QGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALE--TMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI  312 (318)
T ss_dssp             SSSCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHHH--HHHHHHTSCTTCEEEEEEESSSCEEEEEEEC
T ss_pred             HhccCCCCCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence                   368999999999999999999999999999999998644  6677765 57899999999998887777653

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.35  E-value=5.4e-13  Score=134.39  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=105.5

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCC-------CCccceechhcccccceEEE-----eccCCCeeEEEEEec-
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLS-------SSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAI-  367 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvS-------G~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~-  367 (530)
                      +++++.+|++++++++..++..++.......+       ++..|++||++.+.++.+..     ++..+++||+.+... 
T Consensus       160 ~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g~~~~~~lGi~~~~~~  239 (324)
T 1y8t_A          160 TDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKASHASLGVQVTNDK  239 (324)
T ss_dssp             ECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHSCCCCEECCEEEESCS
T ss_pred             EcCCCCCCCccCcEECCCCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHHcCCccccccceEeeecc
Confidence            67888899998888877777777644433221       34578999998777665532     345688999999854 


Q ss_pred             -CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEec-CCceeeEEec
Q psy9257         368 -NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRD-RPLERTVTLH  437 (530)
Q Consensus       368 -~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR-~~~e~tVtL~  437 (530)
                       ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +..++.. ..++.|+|+|.| +++++++++.
T Consensus       240 ~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~  310 (324)
T 1y8t_A          240 DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADA--LVAAVRSKAPGATVALTFQDPSGGSRTVQVT  310 (324)
T ss_dssp             SSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSHHH--HHHHHHTSCTTCEEEEEEECSSCCEEEEEEE
T ss_pred             CCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCCCEEEEEEE
Confidence             579999999999999999999999999999999998754  5666654 468899999999 8887776654

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=4e-12  Score=105.56  Aligned_cols=82  Identities=23%  Similarity=0.260  Sum_probs=72.7

Q ss_pred             cceEEEeccCCCeeEEEEEec-CCcEEEEEeccCCHhhh-cCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-NEGVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-~~GV~Vs~V~pGSPAak-AGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      +|.|.+.|....+|||++... ..+++|..|.++|+|++ +||+.||+|++|||+.+.+++.+++..+++...+ .|.|+
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~   80 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFK   80 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEE
Confidence            577888888778899999973 46799999999999999 7899999999999999998888889999998776 89999


Q ss_pred             EecCC
Q psy9257         425 IRDRP  429 (530)
Q Consensus       425 VrR~~  429 (530)
                      |.|..
T Consensus        81 v~r~~   85 (88)
T 1kwa_A           81 IVPSY   85 (88)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            88864

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.35  E-value=2.7e-12  Score=112.79  Aligned_cols=91  Identities=21%  Similarity=0.365  Sum_probs=73.1

Q ss_pred             ccccceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      ....+.|.+.|...++|||++.++      ..|++|..|.++|+|+++ ||+.||+|++|||+.+.++++.++..+++..
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  101 (120)
T 2iwo_A           22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA  101 (120)
T ss_dssp             ---CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred             CCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            345678888888777899999874      248999999999999999 8999999999999999999998899999876


Q ss_pred             CCCeEEEEEecCCceeeEE
Q psy9257         417 PVNNIRVVIRDRPLERTVT  435 (530)
Q Consensus       417 ~G~~VtLtVrR~~~e~tVt  435 (530)
                       +..|+|+|.|+++..+++
T Consensus       102 -~~~v~l~v~r~g~~~~~~  119 (120)
T 2iwo_A          102 -SGSIEMQVVAGGDVSETS  119 (120)
T ss_dssp             -CSEEEEEEECCTTSSSCC
T ss_pred             -CCeEEEEEEECCccceeE
Confidence             567999999987665543

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.35  E-value=4.5e-12  Score=105.83  Aligned_cols=87  Identities=23%  Similarity=0.376  Sum_probs=73.8

Q ss_pred             ccceEEEeccCCCeeEEEEEecC-----CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN-----EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~-----~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      ..|.|.+.++.. +|||.+....     .|++|..|.++|+|+++||+.||+|++|||+.+.+++..++..+++.. ++.
T Consensus         3 ~~r~v~l~k~~~-~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~   80 (96)
T 2v90_A            3 KPRCLHLEKGPQ-GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSC   80 (96)
T ss_dssp             CCEEEEEECBTT-BSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTE
T ss_pred             CCEEEEEEeCCC-cccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCE
Confidence            356788888755 6999998632     489999999999999999999999999999999998888888888775 889


Q ss_pred             EEEEEecCCceeeE
Q psy9257         421 IRVVIRDRPLERTV  434 (530)
Q Consensus       421 VtLtVrR~~~e~tV  434 (530)
                      +.|+|.|+++...+
T Consensus        81 v~l~v~r~~~~~~~   94 (96)
T 2v90_A           81 VSLTVVDPEADRET   94 (96)
T ss_dssp             EEEEEECCCTTSCC
T ss_pred             EEEEEECCCCcccc
Confidence            99999997765543

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.33  E-value=4.1e-12  Score=107.13  Aligned_cols=92  Identities=28%  Similarity=0.509  Sum_probs=74.9

Q ss_pred             ceechhcccccceEEEeccCCCeeEEEEEecCC--cEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHH
Q psy9257         337 GLKKAYVTNGIRELVLCKDASGLIGLRVCAINE--GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKIL  413 (530)
Q Consensus       337 GIgfAi~~~~Vr~V~L~K~s~G~LG~~V~~~~~--GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LL  413 (530)
                      |+.........+.|.+.+.. .+|||.+.....  |++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..++
T Consensus         2 g~~~~~~~~~~~~v~l~k~~-~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (104)
T 3i4w_A            2 GLGEEDIPREPRRIVIHRGS-TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL   80 (104)
T ss_dssp             ----CCCCSSCEEEEEECBT-TBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred             CcCcCCCCCccEEEEEEeCC-CccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            55555566777888888874 459999987553  99999999999999999 999999999999999999988888888


Q ss_pred             HhCCCCeEEEEEecCCc
Q psy9257         414 KAAPVNNIRVVIRDRPL  430 (530)
Q Consensus       414 k~a~G~~VtLtVrR~~~  430 (530)
                      +. .++.+.|+|+|+++
T Consensus        81 ~~-~~~~v~l~v~r~~~   96 (104)
T 3i4w_A           81 KN-AGQTVTIIAQYKPE   96 (104)
T ss_dssp             HT-SCSEEEEEEEECHH
T ss_pred             Hc-CCCeEEEEEEECcc
Confidence            66 56889999988643

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.33  E-value=1.2e-11  Score=102.16  Aligned_cols=83  Identities=27%  Similarity=0.396  Sum_probs=71.7

Q ss_pred             ccceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..|.|.+.++.. +|||.+....  .|++|..|.++|+|+++||+.||+|++|||+.+.++++.++..+++.. +..+.|
T Consensus         4 ~~r~v~l~k~~~-g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l   81 (90)
T 2he4_A            4 RPRLCHLRKGPQ-GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARL   81 (90)
T ss_dssp             CCEEEEEECBTT-BCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEE
T ss_pred             CcEEEEEEECCC-CccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEE
Confidence            456778888754 5999998754  589999999999999999999999999999999999888888888765 789999


Q ss_pred             EEecCCc
Q psy9257         424 VIRDRPL  430 (530)
Q Consensus       424 tVrR~~~  430 (530)
                      +|.|...
T Consensus        82 ~v~r~~~   88 (90)
T 2he4_A           82 LVVGPST   88 (90)
T ss_dssp             EEECCCC
T ss_pred             EEEccCC
Confidence            9988643

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.32  E-value=1.3e-11  Score=105.67  Aligned_cols=89  Identities=25%  Similarity=0.310  Sum_probs=77.7

Q ss_pred             eEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCC-CCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGL-RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGL-q~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      +|.+.++..++|||.+....  .|++|..|.++|+|+++|| +.||+|++|||+.+.+++.+++..+++...+..+.|+|
T Consensus         4 ~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   83 (112)
T 1qau_A            4 SVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI   83 (112)
T ss_dssp             EEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEE
T ss_pred             EEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEE
Confidence            56677777788999998754  4899999999999999997 99999999999999998777788999887788999999


Q ss_pred             ecCCceeeEEec
Q psy9257         426 RDRPLERTVTLH  437 (530)
Q Consensus       426 rR~~~e~tVtL~  437 (530)
                      .|+++.+++++.
T Consensus        84 ~R~g~~~~~~~~   95 (112)
T 1qau_A           84 LRGPEGFTTHLE   95 (112)
T ss_dssp             EECCTTSEEEEE
T ss_pred             EeCCcccceEee
Confidence            998887777665

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.32  E-value=8.9e-12  Score=104.19  Aligned_cols=83  Identities=29%  Similarity=0.406  Sum_probs=71.5

Q ss_pred             ccceEEEeccCCCeeEEEEEecC---------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN---------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~---------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      .++.+.+.|....+|||.+....         .|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++.
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   84 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   84 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            45677888866778999997632         389999999999999999 99999999999999999988888888877


Q ss_pred             CCCCeEEEEEecCC
Q psy9257         416 APVNNIRVVIRDRP  429 (530)
Q Consensus       416 a~G~~VtLtVrR~~  429 (530)
                       .+..+.|+|.|++
T Consensus        85 -~g~~v~l~v~R~g   97 (98)
T 1ihj_A           85 -ADFKIELEIQTFD   97 (98)
T ss_dssp             -SCSEEEEEEEEC-
T ss_pred             -CCCeEEEEEEeCC
Confidence             6889999999864

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.31  E-value=1.5e-11  Score=101.56  Aligned_cols=83  Identities=30%  Similarity=0.354  Sum_probs=68.5

Q ss_pred             cceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .|.|.+.|... +|||++....  .|++|..|.++|+|+++||+.||+|++|||+.+.+++..++..+++...+..+.++
T Consensus         4 ~r~v~l~r~~~-g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~   82 (91)
T 1g9o_A            4 PRLCCLEKGPN-GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV   82 (91)
T ss_dssp             CEEEEEECBTT-BCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             cEEEEEEeCCC-cccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence            45677877755 5999998755  59999999999999999999999999999999999988889999987655555555


Q ss_pred             EecCCc
Q psy9257         425 IRDRPL  430 (530)
Q Consensus       425 VrR~~~  430 (530)
                      ++|+++
T Consensus        83 ~~r~~~   88 (91)
T 1g9o_A           83 VDPETD   88 (91)
T ss_dssp             ECCCCS
T ss_pred             EcCCcc
Confidence            555543

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=103.36  Aligned_cols=82  Identities=26%  Similarity=0.371  Sum_probs=70.7

Q ss_pred             eEEEeccCCCeeEEEEEec-------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         349 ELVLCKDASGLIGLRVCAI-------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~-------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      +|.+.+. ..+|||++...       ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++.+++..+++. .+..
T Consensus         6 ~v~l~k~-~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~   83 (97)
T 2jil_A            6 EVTLHKE-GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQE   83 (97)
T ss_dssp             EEEEECB-TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSE
T ss_pred             EEEEEeC-CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence            4566664 46699999875       3689999999999999999 99999999999999999888889999988 7899


Q ss_pred             EEEEEecCCcee
Q psy9257         421 IRVVIRDRPLER  432 (530)
Q Consensus       421 VtLtVrR~~~e~  432 (530)
                      +.|+|.|++..+
T Consensus        84 v~l~v~R~~~~~   95 (97)
T 2jil_A           84 AALLIEYDVSET   95 (97)
T ss_dssp             EEEEEEEECCCC
T ss_pred             EEEEEEeCCCcC
Confidence            999999876554

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.30  E-value=9.7e-12  Score=112.18  Aligned_cols=87  Identities=23%  Similarity=0.441  Sum_probs=69.2

Q ss_pred             eccCCCeeEEEEEec---------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         353 CKDASGLIGLRVCAI---------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       353 ~K~s~G~LG~~V~~~---------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      .++.+++|||.+.++               ..|++|..|.++|+|+++||+.||+|++|||+.+.+++..++..+++...
T Consensus        33 ~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~  112 (139)
T 2vz5_A           33 RQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRS  112 (139)
T ss_dssp             EETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTT
T ss_pred             CCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Confidence            445667899998752               36899999999999999999999999999999999888888889997767


Q ss_pred             CCeEEEEEecCCceeeEEeccC
Q psy9257         418 VNNIRVVIRDRPLERTVTLHRD  439 (530)
Q Consensus       418 G~~VtLtVrR~~~e~tVtL~kd  439 (530)
                      ++.|.|+|.|++++.++.+...
T Consensus       113 g~~v~l~v~R~g~~~~v~~~~~  134 (139)
T 2vz5_A          113 EEVVRLLVTRQSLQKAVQQSML  134 (139)
T ss_dssp             CSEEEEEEEECC-------CCC
T ss_pred             CCEEEEEEEECCEEEEEEEeec
Confidence            7899999999887776665443

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=1.6e-11  Score=104.40  Aligned_cols=83  Identities=25%  Similarity=0.298  Sum_probs=72.9

Q ss_pred             ccceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ..+.|.+.|...++|||.+....   .|++|..|.++++|+++||+.||+|++|||+.+.+++.+++..+++.  +..+.
T Consensus        15 ~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~   92 (104)
T 1wi2_A           15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREIS   92 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEE
T ss_pred             CCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEE
Confidence            35678888887788999999743   58999999999999999999999999999999999888889999987  67899


Q ss_pred             EEEecCCc
Q psy9257         423 VVIRDRPL  430 (530)
Q Consensus       423 LtVrR~~~  430 (530)
                      |+|+|++.
T Consensus        93 l~v~r~~~  100 (104)
T 1wi2_A           93 MRVRFFSG  100 (104)
T ss_dssp             EEEECCCC
T ss_pred             EEEEECCC
Confidence            99988654

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.30  E-value=1.6e-11  Score=104.50  Aligned_cols=90  Identities=19%  Similarity=0.286  Sum_probs=71.4

Q ss_pred             ccceEEEeccCCCeeEEEEEecC--------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN--------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~--------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      .++.|.+.|.. ++|||++.++.        .|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++..
T Consensus         3 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (105)
T 2awx_A            3 KIMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT   81 (105)
T ss_dssp             CEEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC
T ss_pred             eEEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            34567777775 56999998642        489999999999999999 999999999999999998888888888765


Q ss_pred             CCCeEEEEEecCCceeeEEec
Q psy9257         417 PVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       417 ~G~~VtLtVrR~~~e~tVtL~  437 (530)
                       +..|.|+|.|++....+.+.
T Consensus        82 -~~~v~l~v~R~~~~~~~~~~  101 (105)
T 2awx_A           82 -SDFVYLKVAKPTSMYISRHH  101 (105)
T ss_dssp             -CSEEEEEEECCCC-------
T ss_pred             -CCeEEEEEEcCCCCCCcccc
Confidence             78999999998766655543

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.29  E-value=1.8e-11  Score=105.96  Aligned_cols=86  Identities=21%  Similarity=0.330  Sum_probs=75.2

Q ss_pred             cccceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCC-CCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGL-RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGL-q~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..++.|.+.|...++|||.+.....|++|..|.++++|+++|| +.||+|++|||+.|.+++.+++..+++... ..+.|
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l  102 (113)
T 1va8_A           24 ETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTF  102 (113)
T ss_dssp             EECEEEEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEE
T ss_pred             CceEEEEEEeCCCCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEE
Confidence            3567788888877689999998889999999999999999998 999999999999999988888999997754 67899


Q ss_pred             EEecCCce
Q psy9257         424 VIRDRPLE  431 (530)
Q Consensus       424 tVrR~~~e  431 (530)
                      +|.|.+++
T Consensus       103 ~v~r~~~~  110 (113)
T 1va8_A          103 VLIPSSGP  110 (113)
T ss_dssp             EEECCCCC
T ss_pred             EEEECCcc
Confidence            99887654

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.29  E-value=2.8e-11  Score=101.19  Aligned_cols=84  Identities=19%  Similarity=0.271  Sum_probs=70.6

Q ss_pred             eEEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      .|.+.+. ..+|||.+....    .|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++.. ++.+.|
T Consensus         7 ~v~l~~~-~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l   84 (98)
T 2opg_A            7 TIEISKG-RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRL   84 (98)
T ss_dssp             EEEEECB-TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEE
T ss_pred             EEEEEEC-CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEE
Confidence            5666666 456999999755    599999999999999999 999999999999999999887788888765 488999


Q ss_pred             EEecCCceeeE
Q psy9257         424 VIRDRPLERTV  434 (530)
Q Consensus       424 tVrR~~~e~tV  434 (530)
                      +|.|++...++
T Consensus        85 ~v~R~~~~~~~   95 (98)
T 2opg_A           85 TLYRDEAPYKS   95 (98)
T ss_dssp             EEEECSSCCCE
T ss_pred             EEEcCCCCCcc
Confidence            99987665443

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.29  E-value=1e-11  Score=107.87  Aligned_cols=92  Identities=23%  Similarity=0.302  Sum_probs=77.1

Q ss_pred             ccceEEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      .++.+.+.+....+|||++....    .|++|..|.++++|+++| |+.||+|++|||+.|.++++.++..+++...+..
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~   94 (119)
T 1x6d_A           15 GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   94 (119)
T ss_dssp             TEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             CeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCe
Confidence            34566677776788999998643    589999999999999999 9999999999999999988988999998877777


Q ss_pred             EEEEEecCCceeeEEec
Q psy9257         421 IRVVIRDRPLERTVTLH  437 (530)
Q Consensus       421 VtLtVrR~~~e~tVtL~  437 (530)
                      +.++|+|+++.++++-.
T Consensus        95 ~~l~v~R~~~~~~~~~~  111 (119)
T 1x6d_A           95 QAVIVTRKLTPEAMPDL  111 (119)
T ss_dssp             EEEEEEECCCSSSCCCC
T ss_pred             EEEEEEcCCCccchhhc
Confidence            77888888776655433

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.29  E-value=2.2e-11  Score=102.55  Aligned_cols=84  Identities=21%  Similarity=0.389  Sum_probs=71.7

Q ss_pred             cccceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      ...+.|.+.+.. ++|||++..+        ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++.
T Consensus         6 ~~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   84 (101)
T 2jik_A            6 VTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN   84 (101)
T ss_dssp             EEEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT
T ss_pred             CccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            345678888866 6799999973        3689999999999999999 99999999999999999988888888876


Q ss_pred             CCCCeEEEEEecCCc
Q psy9257         416 APVNNIRVVIRDRPL  430 (530)
Q Consensus       416 a~G~~VtLtVrR~~~  430 (530)
                      . ++.+.|+|.|++.
T Consensus        85 ~-g~~v~l~v~R~~~   98 (101)
T 2jik_A           85 A-GYAVSLRVQHRLE   98 (101)
T ss_dssp             C-CSEEEEEEEEESC
T ss_pred             C-CCeEEEEEEeCCC
Confidence            4 7889999988643

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.28  E-value=2.4e-11  Score=101.17  Aligned_cols=80  Identities=23%  Similarity=0.497  Sum_probs=67.0

Q ss_pred             EEEeccCCCeeEEEEEe---------cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         350 LVLCKDASGLIGLRVCA---------INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~---------~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      +.+.+. .++|||.+..         ...|++|..|.++|+|+++||+.||+|++|||+.+.++.+.++...++. .+..
T Consensus         7 v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~   84 (97)
T 2w4f_A            7 LTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTA   84 (97)
T ss_dssp             EEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSE
T ss_pred             EEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCe
Confidence            334444 7789999986         2478999999999999999999999999999999999988666666655 6899


Q ss_pred             EEEEEecCCce
Q psy9257         421 IRVVIRDRPLE  431 (530)
Q Consensus       421 VtLtVrR~~~e  431 (530)
                      +.|+|.|++++
T Consensus        85 v~l~v~R~g~~   95 (97)
T 2w4f_A           85 VQMRVWRERET   95 (97)
T ss_dssp             EEEEEECCSSC
T ss_pred             EEEEEEeCCcc
Confidence            99999997654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.28  E-value=4.8e-12  Score=109.46  Aligned_cols=88  Identities=31%  Similarity=0.446  Sum_probs=75.0

Q ss_pred             ccceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcC-CcCHHHHHHHHHhCC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA-GYNMKQVHKILKAAP  417 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~-g~s~~~v~~LLk~a~  417 (530)
                      .++.|.+.|...++|||++.+.      ..|++|..|.++|+|+++| |+.||+|++|||+.+. +++..++..+++. .
T Consensus        20 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~   98 (117)
T 2o2t_A           20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-A   98 (117)
T ss_dssp             CEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-C
T ss_pred             eEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-C
Confidence            3557777787677899998864      3689999999999999999 9999999999999998 8888888888877 5


Q ss_pred             CCeEEEEEecCCceeeE
Q psy9257         418 VNNIRVVIRDRPLERTV  434 (530)
Q Consensus       418 G~~VtLtVrR~~~e~tV  434 (530)
                      +..|.|+|.|+++.+++
T Consensus        99 ~~~v~l~v~R~~~~~~~  115 (117)
T 2o2t_A           99 KDTVQLVIARGSLPQYY  115 (117)
T ss_dssp             CSEEEEEEESSCCGGGG
T ss_pred             CCEEEEEEEeCCcceee
Confidence            78999999998766554

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.28  E-value=1.9e-11  Score=103.13  Aligned_cols=85  Identities=24%  Similarity=0.374  Sum_probs=72.0

Q ss_pred             cceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      .+.|.+.+. ..+|||++.++        ..|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++. .
T Consensus         5 ~~~v~l~k~-~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~   82 (102)
T 2i1n_A            5 YEEIVLERG-NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-A   82 (102)
T ss_dssp             EEEEEEECB-TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-S
T ss_pred             EEEEEEEEC-CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C
Confidence            456777776 45699999874        3599999999999999999 99999999999999999888888888877 5


Q ss_pred             CCeEEEEEecCCceee
Q psy9257         418 VNNIRVVIRDRPLERT  433 (530)
Q Consensus       418 G~~VtLtVrR~~~e~t  433 (530)
                      +..+.|+|.|+++..+
T Consensus        83 g~~v~l~v~R~~~~~~   98 (102)
T 2i1n_A           83 GPVVRLVVRRRQPPPE   98 (102)
T ss_dssp             CSEEEEEEEEECCCCS
T ss_pred             CCeEEEEEEeCCCCCC
Confidence            7899999998765443

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.28  E-value=1.4e-11  Score=102.85  Aligned_cols=76  Identities=26%  Similarity=0.385  Sum_probs=67.6

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .|.|.+.|+..+.|||.++.   | .|..|.++++|+++||+.||+|++|||+.+.+++++++..+++ ..+..|+|+|.
T Consensus         5 ~r~v~l~k~~~g~~Gf~i~~---g-~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~   79 (82)
T 1r6j_A            5 PRTITMHKDSTGHVGFIFKN---G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIM   79 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEET---T-EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEE
T ss_pred             eEEEEEEECCCCCeEEEEEC---C-EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEE
Confidence            46788889888889999973   3 4789999999999999999999999999999999999999998 56788999876


Q ss_pred             c
Q psy9257         427 D  427 (530)
Q Consensus       427 R  427 (530)
                      .
T Consensus        80 p   80 (82)
T 1r6j_A           80 P   80 (82)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.28  E-value=2.7e-11  Score=99.32  Aligned_cols=74  Identities=23%  Similarity=0.359  Sum_probs=65.3

Q ss_pred             cCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         355 DASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       355 ~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      ...++|||++....   .|++|..|.++|+|+++||+.||+|++|||+.+.+++.+++..+++... +.+.|+|.|++
T Consensus         9 ~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~   85 (87)
T 2pa1_A            9 AGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRIT   85 (87)
T ss_dssp             CSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred             CCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecC
Confidence            34567999998654   4899999999999999999999999999999999987888999998876 88999998875

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.27  E-value=1.8e-11  Score=103.41  Aligned_cols=82  Identities=23%  Similarity=0.503  Sum_probs=67.8

Q ss_pred             cceEEEec---cCCCeeEEEEEe---------------cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHH
Q psy9257         347 IRELVLCK---DASGLIGLRVCA---------------INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQ  408 (530)
Q Consensus       347 Vr~V~L~K---~s~G~LG~~V~~---------------~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~  408 (530)
                      ++.+.+.+   ..+.+|||++.+               ...|++|..|.++|+|+++||+.||+|++|||+.+.+++.++
T Consensus         5 ~~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~   84 (104)
T 3sfj_A            5 VQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQ   84 (104)
T ss_dssp             EEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred             eEEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            34455543   344579999993               246899999999999999999999999999999999988777


Q ss_pred             HHHHHHhCCCCeEEEEEecC
Q psy9257         409 VHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       409 v~~LLk~a~G~~VtLtVrR~  428 (530)
                      +..+++...+..+.|+|.|+
T Consensus        85 ~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           85 ARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEEEEEcC
Confidence            88888777778999998874

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.27  E-value=2.2e-11  Score=100.62  Aligned_cols=76  Identities=24%  Similarity=0.369  Sum_probs=66.6

Q ss_pred             CCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceee
Q psy9257         357 SGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT  433 (530)
Q Consensus       357 ~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~t  433 (530)
                      .+.|||++....   .|++|..|.++|+|+++||+.||+|++|||+.+.++.+.++..+++. .++.+.|+|.|++++++
T Consensus        12 ~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~~   90 (91)
T 2pkt_A           12 PGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEHESD   90 (91)
T ss_dssp             SSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECCCCC
T ss_pred             CCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCcccc
Confidence            466999998643   58999999999999999999999999999999999997778888877 78999999999776543

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.27  E-value=1.1e-11  Score=106.52  Aligned_cols=83  Identities=14%  Similarity=0.342  Sum_probs=71.3

Q ss_pred             cceEEEeccCCCeeEEEEEec-----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC--CC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA--PV  418 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a--~G  418 (530)
                      .+.|.+.|.....|||++.+.     ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++++++..+++..  .+
T Consensus         6 ~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~   85 (108)
T 3cbz_A            6 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKP   85 (108)
T ss_dssp             EEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSS
T ss_pred             EEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCC
Confidence            346677766667799999875     4789999999999999999 999999999999999999888899999876  45


Q ss_pred             CeEEEEEecCC
Q psy9257         419 NNIRVVIRDRP  429 (530)
Q Consensus       419 ~~VtLtVrR~~  429 (530)
                      ..|.|+|.|..
T Consensus        86 ~~v~l~v~R~~   96 (108)
T 3cbz_A           86 GPIVLTVAKSG   96 (108)
T ss_dssp             SCEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            57999998864

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.26  E-value=3.6e-11  Score=100.64  Aligned_cols=82  Identities=18%  Similarity=0.409  Sum_probs=69.5

Q ss_pred             ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..|.+.+. .++|||.+....   .|++|..|.++++|+++| |+.||+|++|||+.+.+++..++..+++ ..+..|.|
T Consensus         7 ~~v~l~~~-~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l   84 (97)
T 1n7e_A            7 YTVELKRY-GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTL   84 (97)
T ss_dssp             EEEEEECT-TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEE
T ss_pred             EEEEEEeC-CCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEE
Confidence            35555444 566999998754   689999999999999999 9999999999999999988888888887 46789999


Q ss_pred             EEecCCce
Q psy9257         424 VIRDRPLE  431 (530)
Q Consensus       424 tVrR~~~e  431 (530)
                      +|.|+++.
T Consensus        85 ~v~R~~~~   92 (97)
T 1n7e_A           85 KIKKQTDA   92 (97)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            99887644

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.26  E-value=2.1e-11  Score=104.55  Aligned_cols=85  Identities=21%  Similarity=0.306  Sum_probs=73.5

Q ss_pred             ccccceEEEeccCCCeeEEEEEe-------cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCA-------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~-------~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      ...++.|.+.|.. .+|||.+..       ...|++|..|.++++|+++| |+.||+|++|||+.+.+++.+++..+++.
T Consensus        13 ~~~~~~v~l~k~~-~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   91 (108)
T 2d92_A           13 SPEVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA   91 (108)
T ss_dssp             CSSCEEEEEEECS-SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred             CCceEEEEEEECC-CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3455678888875 469999987       34789999999999999999 99999999999999999998899999988


Q ss_pred             CCCCeEEEEEecCC
Q psy9257         416 APVNNIRVVIRDRP  429 (530)
Q Consensus       416 a~G~~VtLtVrR~~  429 (530)
                      ..+..|.|+|+|..
T Consensus        92 ~~~~~v~l~v~R~~  105 (108)
T 2d92_A           92 VPPGLVHLGICSGP  105 (108)
T ss_dssp             SCSEEEEEEEECCC
T ss_pred             CCCCeEEEEEEcCC
Confidence            76778999998853

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.26  E-value=2.3e-11  Score=108.65  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=73.1

Q ss_pred             cccceEEEeccCCCeeEEEEEecCC---------------cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHH
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAINE---------------GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQV  409 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~~---------------GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v  409 (530)
                      ...|.|.+.|...++|||++.....               |++|..|.++|+|+++||+.||+|++|||+.+.+++..++
T Consensus        26 ~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~  105 (132)
T 3l4f_D           26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV  105 (132)
T ss_dssp             CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHH
T ss_pred             CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            3456788888777789999998653               7999999999999999999999999999999999999889


Q ss_pred             HHHHHhCCCCeEEEEEecCC
Q psy9257         410 HKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       410 ~~LLk~a~G~~VtLtVrR~~  429 (530)
                      ..+++. .+..+.|+|.|..
T Consensus       106 ~~~l~~-~g~~v~l~v~~~~  124 (132)
T 3l4f_D          106 VNMIRQ-GGNTLMVKVVMVT  124 (132)
T ss_dssp             HHHHHH-TTTEEEEEEECCC
T ss_pred             HHHHHc-CCCEEEEEEEECC
Confidence            999987 5688999988754

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.26  E-value=3.7e-11  Score=102.83  Aligned_cols=80  Identities=24%  Similarity=0.351  Sum_probs=68.9

Q ss_pred             ceEEEeccCCCeeEEEEEecCC---------------cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHH
Q psy9257         348 RELVLCKDASGLIGLRVCAINE---------------GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKI  412 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~~---------------GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~L  412 (530)
                      +.+.+.+...++|||++.....               |++|..|.++|+|+++||+.||+|++|||+.+.++++.++..+
T Consensus         9 ~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~   88 (109)
T 1q3o_A            9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM   88 (109)
T ss_dssp             EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4677776667789999987543               7999999999999999999999999999999999988888888


Q ss_pred             HHhCCCCeEEEEEecC
Q psy9257         413 LKAAPVNNIRVVIRDR  428 (530)
Q Consensus       413 Lk~a~G~~VtLtVrR~  428 (530)
                      ++.. +..+.|+|.|.
T Consensus        89 l~~~-~~~v~l~v~~~  103 (109)
T 1q3o_A           89 IRQG-GNTLMVKVVMV  103 (109)
T ss_dssp             HHHT-TTEEEEEEEEE
T ss_pred             HHhC-CCEEEEEEEEC
Confidence            8775 67888888763

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.26  E-value=4.4e-11  Score=98.70  Aligned_cols=81  Identities=23%  Similarity=0.386  Sum_probs=67.5

Q ss_pred             cceEEEeccCC-CeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         347 IRELVLCKDAS-GLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s~-G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      .+.|.+.+... ..|||.+...  ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+.++..+++. .++.+.|
T Consensus         7 ~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l   85 (91)
T 1m5z_A            7 LHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDL   85 (91)
T ss_dssp             EEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEE
T ss_pred             eEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEE
Confidence            34566766543 5699999864  379999999999999999999999999999999999988777777765 4788999


Q ss_pred             EEecC
Q psy9257         424 VIRDR  428 (530)
Q Consensus       424 tVrR~  428 (530)
                      +|.|+
T Consensus        86 ~v~R~   90 (91)
T 1m5z_A           86 VISRN   90 (91)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            98875

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=3.5e-11  Score=99.82  Aligned_cols=81  Identities=20%  Similarity=0.353  Sum_probs=68.1

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .|.|.+.++.. +|||.+.. ..|++|..|.++|+|+++||+.||+|++|||+.+.+++..++..+++. .+..+.|+|.
T Consensus         4 ~r~v~l~~~~~-g~G~~l~~-~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~   80 (91)
T 2f5y_A            4 YRQITIPRGKD-GFGFTICC-DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVW   80 (91)
T ss_dssp             EEEEEEECBTT-BTSEEEEC-SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEE
T ss_pred             eEEEEEEeCCC-CccEEEec-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence            45677777654 58999974 578999999999999999999999999999999999988788888876 3567999998


Q ss_pred             cCCc
Q psy9257         427 DRPL  430 (530)
Q Consensus       427 R~~~  430 (530)
                      |+..
T Consensus        81 R~~~   84 (91)
T 2f5y_A           81 RMVP   84 (91)
T ss_dssp             ECC-
T ss_pred             eCCC
Confidence            8653

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=3.9e-11  Score=101.12  Aligned_cols=82  Identities=23%  Similarity=0.392  Sum_probs=67.8

Q ss_pred             ceEEEeccCCCeeEEEEEecC------------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHH
Q psy9257         348 RELVLCKDASGLIGLRVCAIN------------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILK  414 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~------------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk  414 (530)
                      +.+.+.+..+++|||.+.+..            .|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++
T Consensus         6 ~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   85 (103)
T 2fcf_A            6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR   85 (103)
T ss_dssp             EEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356667777788999997632            489999999999999999 9999999999999999988888999998


Q ss_pred             hCCCCeEEEEEecCCc
Q psy9257         415 AAPVNNIRVVIRDRPL  430 (530)
Q Consensus       415 ~a~G~~VtLtVrR~~~  430 (530)
                      .. +..+.|+|.|...
T Consensus        86 ~~-~~~v~l~v~r~~~  100 (103)
T 2fcf_A           86 KA-GNPVVFMVQSIIS  100 (103)
T ss_dssp             TC-CSSEEEEEECCCC
T ss_pred             hC-CCcEEEEEEECCC
Confidence            76 4589999988643

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=4.5e-11  Score=102.29  Aligned_cols=82  Identities=22%  Similarity=0.481  Sum_probs=68.9

Q ss_pred             eEEEeccCCCeeEEEEEe---------cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         349 ELVLCKDASGLIGLRVCA---------INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~---------~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      .+.+.+. .++|||.+..         ...|++|..|.++|+|+++||+.||+|++|||+.+.++.+.++...++. .++
T Consensus        18 ~~~l~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~   95 (110)
T 1x5q_A           18 TLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGT   95 (110)
T ss_dssp             EEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCS
T ss_pred             EEEEecC-CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCC
Confidence            4445555 6789999985         3478999999999999999999999999999999999988777776665 689


Q ss_pred             eEEEEEecCCcee
Q psy9257         420 NIRVVIRDRPLER  432 (530)
Q Consensus       420 ~VtLtVrR~~~e~  432 (530)
                      .|.|+|.|+++.+
T Consensus        96 ~v~l~v~R~g~~~  108 (110)
T 1x5q_A           96 AVQMRVWRESGPS  108 (110)
T ss_dssp             EEEEEEEECSSCC
T ss_pred             eEEEEEEECCccC
Confidence            9999999977554

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.25  E-value=4.2e-11  Score=99.51  Aligned_cols=83  Identities=20%  Similarity=0.344  Sum_probs=71.4

Q ss_pred             cccceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      ..+|.+.+.|.. .+|||.+...  ..+++|..|.++|+|+++| |+.||+|++|||..+.+++.+++..+++... ..+
T Consensus         3 ~~~r~v~l~k~~-~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v   80 (93)
T 3o46_A            3 DSVKIIRLVKNR-EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ-GAI   80 (93)
T ss_dssp             -CCEEEEEEESS-SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC-EEE
T ss_pred             ccEEEEEEEeCC-CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeE
Confidence            456778888764 4799999976  5789999999999999999 9999999999999999989988999998865 488


Q ss_pred             EEEEecCC
Q psy9257         422 RVVIRDRP  429 (530)
Q Consensus       422 tLtVrR~~  429 (530)
                      .|+|.+..
T Consensus        81 ~l~v~~~~   88 (93)
T 3o46_A           81 TFKIIPGS   88 (93)
T ss_dssp             EEEEECC-
T ss_pred             EEEEEeCC
Confidence            99988754

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.25  E-value=4.3e-11  Score=98.73  Aligned_cols=80  Identities=21%  Similarity=0.337  Sum_probs=70.1

Q ss_pred             cceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      .+.|.+.+...+.|||.+...   ..|++|..|.++|+|+++ ||+.||+|++|||+.+.++++.++..+++.. +..+.
T Consensus         5 ~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~~v~   83 (90)
T 1qav_A            5 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVV   83 (90)
T ss_dssp             CEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEE
T ss_pred             cEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEE
Confidence            467888887778899999864   468999999999999999 8999999999999999999988888888764 67899


Q ss_pred             EEEec
Q psy9257         423 VVIRD  427 (530)
Q Consensus       423 LtVrR  427 (530)
                      |+|+|
T Consensus        84 l~v~r   88 (90)
T 1qav_A           84 LEVKY   88 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98876

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.25  E-value=3e-11  Score=102.69  Aligned_cols=86  Identities=28%  Similarity=0.373  Sum_probs=72.3

Q ss_pred             cccccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC--CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG--LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG--Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      ....++.+.+.+...+.|||.+...   ..+++|..|.++|+|+++|  |+.||+|++|||+.+.++.+.++..+++...
T Consensus        14 ~~~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~   93 (107)
T 3nfk_A           14 PHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   93 (107)
T ss_dssp             --CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred             CCCCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            4456778888888778899999864   3579999999999999999  9999999999999999999988888887654


Q ss_pred             ---CCeEEEEEecC
Q psy9257         418 ---VNNIRVVIRDR  428 (530)
Q Consensus       418 ---G~~VtLtVrR~  428 (530)
                         +..|.|+|+|+
T Consensus        94 ~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           94 ERHSGELMLLVRPN  107 (107)
T ss_dssp             GSBTTBEEEEEECC
T ss_pred             ccCCcEEEEEEEcC
Confidence               24889988773

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=2.7e-11  Score=105.43  Aligned_cols=84  Identities=19%  Similarity=0.319  Sum_probs=70.4

Q ss_pred             cceEEEeccC------CCeeEEEEEecC--------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHH
Q psy9257         347 IRELVLCKDA------SGLIGLRVCAIN--------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHK  411 (530)
Q Consensus       347 Vr~V~L~K~s------~G~LG~~V~~~~--------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~  411 (530)
                      ++++.+.+..      ..+|||++.+..        .|++|..|.++++|+++| |+.||+|++|||+.+.++++.++..
T Consensus        13 ~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   92 (117)
T 1ujd_A           13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS   92 (117)
T ss_dssp             EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHH
Confidence            3456666554      467999998643        279999999999999999 9999999999999999999888888


Q ss_pred             HHHhCCCCeEEEEEecCCce
Q psy9257         412 ILKAAPVNNIRVVIRDRPLE  431 (530)
Q Consensus       412 LLk~a~G~~VtLtVrR~~~e  431 (530)
                      +++. .+..|.|+|+|++..
T Consensus        93 ~l~~-~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           93 IISQ-QSGEAEICVRLDLNM  111 (117)
T ss_dssp             HHSC-CSSCEEEEEESSCCC
T ss_pred             HHhc-CCCEEEEEEEECCcc
Confidence            8876 578899999987643

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=2.5e-11  Score=101.36  Aligned_cols=82  Identities=21%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             cccceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..+|.|.+.|...++|||++.....+++|..|.++++|+++| |+.||+|++|||+.+ +.+.+++..+++.. ++.+.|
T Consensus         5 ~~~r~v~l~k~~~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~~~v~l   82 (91)
T 2e7k_A            5 SSGRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-SGSVIL   82 (91)
T ss_dssp             CCSCBCCBCCCTTCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-CSSBCE
T ss_pred             CCcEEEEEEECCCCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-CCeEEE
Confidence            455677777777888999999877899999999999999987 999999999999999 77777899999874 678888


Q ss_pred             EEecC
Q psy9257         424 VIRDR  428 (530)
Q Consensus       424 tVrR~  428 (530)
                      +|.|.
T Consensus        83 ~v~~~   87 (91)
T 2e7k_A           83 KILSG   87 (91)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            88874

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.25  E-value=3.9e-11  Score=98.82  Aligned_cols=74  Identities=19%  Similarity=0.286  Sum_probs=63.8

Q ss_pred             CCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCc
Q psy9257         356 ASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL  430 (530)
Q Consensus       356 s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~  430 (530)
                      ..++|||++...   ..|++|..|.++|+|+++||+.||+|++|||+.+.+++..++..+++.. +..+.|+|.|++.
T Consensus        11 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~   87 (89)
T 2q3g_A           11 GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAIT   87 (89)
T ss_dssp             SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred             CCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence            346799999863   4679999999999999999999999999999999998887888888765 7889999988653

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.24  E-value=2.7e-11  Score=100.50  Aligned_cols=81  Identities=25%  Similarity=0.401  Sum_probs=66.5

Q ss_pred             cceEEEeccCCCeeEEEEEecCC--cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAINE--GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~--GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .|.+.+.+.. .+|||.+.....  |++|..|.++|+|+++||+.||+|++|||..+.+++++++..+++. .+..+.++
T Consensus         6 ~r~v~l~~~~-~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~   83 (95)
T 3r68_A            6 PRVVVIKKGS-NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLL   83 (95)
T ss_dssp             CEEEEEECBT-TBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEE
T ss_pred             cEEEEEecCC-CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEE
Confidence            4567777764 569999987554  9999999999999999999999999999999999988889999987 45667776


Q ss_pred             EecCC
Q psy9257         425 IRDRP  429 (530)
Q Consensus       425 VrR~~  429 (530)
                      +.|+.
T Consensus        84 ~~r~~   88 (95)
T 3r68_A           84 VLDKE   88 (95)
T ss_dssp             EEECC
T ss_pred             EECCc
Confidence            66543

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.24  E-value=5.3e-11  Score=98.38  Aligned_cols=82  Identities=29%  Similarity=0.416  Sum_probs=70.2

Q ss_pred             cceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..+|.+.+....+|||.+...  ..|++|..|.++|+|+++| |+.||+|++|||+.+.++.+.++..+++.. +..+.|
T Consensus         5 ~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l   83 (92)
T 2qg1_A            5 TLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS-LGTVTL   83 (92)
T ss_dssp             EEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEE
T ss_pred             EEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEE
Confidence            346777777677899999875  3699999999999999999 999999999999999998887888888764 678999


Q ss_pred             EEecCC
Q psy9257         424 VIRDRP  429 (530)
Q Consensus       424 tVrR~~  429 (530)
                      +|.|..
T Consensus        84 ~v~R~~   89 (92)
T 2qg1_A           84 EVGRIS   89 (92)
T ss_dssp             EEECCC
T ss_pred             EEEccc
Confidence            998864

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.24  E-value=5.6e-11  Score=98.40  Aligned_cols=81  Identities=19%  Similarity=0.343  Sum_probs=68.4

Q ss_pred             cceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      +++|.+.|.. .+|||.+.+.        ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++.. 
T Consensus         4 ~~~v~l~k~~-~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   81 (94)
T 2fe5_A            4 IMEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-   81 (94)
T ss_dssp             EEEEEEECCT-TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-
T ss_pred             EEEEEEEECC-CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            4677787774 5599999863        2589999999999999999 999999999999999999887788888765 


Q ss_pred             CCeEEEEEecCC
Q psy9257         418 VNNIRVVIRDRP  429 (530)
Q Consensus       418 G~~VtLtVrR~~  429 (530)
                      +..|.|+|.|++
T Consensus        82 ~~~v~l~v~R~g   93 (94)
T 2fe5_A           82 SDMVYLKVAKPG   93 (94)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            468999998764

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.24  E-value=6e-11  Score=98.78  Aligned_cols=82  Identities=22%  Similarity=0.328  Sum_probs=69.4

Q ss_pred             ceEEEecc-CCCeeEEEEEec--CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         348 RELVLCKD-ASGLIGLRVCAI--NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       348 r~V~L~K~-s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..|.+.|. ...+|||.+...  ..|++|..|.++|+|+++| |+.||+|++|||..+.++++.++..+++.. +..+.|
T Consensus         5 ~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l   83 (95)
T 2vwr_A            5 LQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS-GERVNL   83 (95)
T ss_dssp             EEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEE
T ss_pred             EEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEE
Confidence            45677764 456799999764  3689999999999999999 999999999999999999888788888764 789999


Q ss_pred             EEecCCc
Q psy9257         424 VIRDRPL  430 (530)
Q Consensus       424 tVrR~~~  430 (530)
                      +|.|+++
T Consensus        84 ~v~R~~~   90 (95)
T 2vwr_A           84 TIARPGK   90 (95)
T ss_dssp             EEEEESC
T ss_pred             EEEcCCc
Confidence            9988643

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=3.6e-11  Score=105.04  Aligned_cols=82  Identities=20%  Similarity=0.338  Sum_probs=70.6

Q ss_pred             ccceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      ..+.|.+.|.. .+|||++.++        ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++..
T Consensus        24 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  102 (117)
T 2byg_A           24 TVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT  102 (117)
T ss_dssp             EEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            34567777765 6799999863        3589999999999999999 999999999999999999998899999765


Q ss_pred             CCCeEEEEEecCC
Q psy9257         417 PVNNIRVVIRDRP  429 (530)
Q Consensus       417 ~G~~VtLtVrR~~  429 (530)
                       +..|.|+|.|++
T Consensus       103 -g~~v~l~v~R~~  114 (117)
T 2byg_A          103 -SEVVYLKVGKPT  114 (117)
T ss_dssp             -CSEEEEEEEEEE
T ss_pred             -CCeEEEEEEeCC
Confidence             788999998864

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.24  E-value=5.6e-11  Score=99.51  Aligned_cols=81  Identities=32%  Similarity=0.413  Sum_probs=69.7

Q ss_pred             cceEEEeccCCCeeEEEEEe-------c---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         347 IRELVLCKDASGLIGLRVCA-------I---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~-------~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      .+.|.+.|...+.|||++..       .   ..|++|..|.++|+|+++||+.||+|++|||+.+.+++.+++..+++..
T Consensus         5 ~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~   84 (96)
T 2ego_A            5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS   84 (96)
T ss_dssp             EEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred             cEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            46788888877789999985       1   2489999999999999999999999999999999998888899999876


Q ss_pred             CCCeEEEEEecC
Q psy9257         417 PVNNIRVVIRDR  428 (530)
Q Consensus       417 ~G~~VtLtVrR~  428 (530)
                       +..+.|+|.+.
T Consensus        85 -~~~v~l~v~~~   95 (96)
T 2ego_A           85 -GNVLRLETLYG   95 (96)
T ss_dssp             -TTEEEEEEECC
T ss_pred             -CCeEEEEEEEC
Confidence             56889988763

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.24  E-value=1.8e-11  Score=105.21  Aligned_cols=88  Identities=19%  Similarity=0.357  Sum_probs=73.4

Q ss_pred             eEEEeccCCCeeEEEEEe---------cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         349 ELVLCKDASGLIGLRVCA---------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~---------~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      .|.+.+.. .+|||++..         ...|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++.. +
T Consensus         7 ~v~l~k~~-~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g   84 (113)
T 2g5m_B            7 PVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-K   84 (113)
T ss_dssp             EEECCCCS-SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS-C
T ss_pred             EEEEEeCC-CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-C
Confidence            45555554 569999987         24689999999999999999 999999999999999998888888888775 7


Q ss_pred             CeEEEEEecCCceeeEEecc
Q psy9257         419 NNIRVVIRDRPLERTVTLHR  438 (530)
Q Consensus       419 ~~VtLtVrR~~~e~tVtL~k  438 (530)
                      ..|.|+|.|++...++++..
T Consensus        85 ~~v~l~v~R~~~~~~~~v~p  104 (113)
T 2g5m_B           85 GRVRFMIGRERPGEQSEVAQ  104 (113)
T ss_dssp             SSCEEEEEECCCCTTSSCSS
T ss_pred             CeEEEEEEeCCCCCcchhhh
Confidence            88999999987766655544

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=2.2e-11  Score=104.20  Aligned_cols=90  Identities=21%  Similarity=0.424  Sum_probs=75.3

Q ss_pred             ceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         348 RELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      ..|.+.+.. .+|||.+...      ..|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++.. +..
T Consensus        10 ~~v~l~~~~-~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~   87 (110)
T 1um1_A           10 FTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKK   87 (110)
T ss_dssp             EEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSE
T ss_pred             EEEEEEECC-CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCe
Confidence            356666665 4699999873      4689999999999999999 999999999999999998888888888764 789


Q ss_pred             EEEEEecCCceeeEEeccC
Q psy9257         421 IRVVIRDRPLERTVTLHRD  439 (530)
Q Consensus       421 VtLtVrR~~~e~tVtL~kd  439 (530)
                      +.|+|.|+++.+++.+...
T Consensus        88 v~l~v~R~~~~~~~~v~~~  106 (110)
T 1um1_A           88 MRFLVAKSDVETAKKIHSG  106 (110)
T ss_dssp             EEEEEECCCHHHHHHHSSC
T ss_pred             EEEEEEeCCcceeEEEEec
Confidence            9999999887766665543

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=3.9e-11  Score=104.98  Aligned_cols=84  Identities=21%  Similarity=0.349  Sum_probs=71.4

Q ss_pred             ccceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      ..+.|.+.|.. .+|||++.+.      ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++... 
T Consensus        25 ~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-  102 (117)
T 2fne_A           25 QCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-  102 (117)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-
T ss_pred             ccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            34578888876 5699999864      3589999999999999999 9999999999999999888888899888754 


Q ss_pred             CeEEEEEecCCce
Q psy9257         419 NNIRVVIRDRPLE  431 (530)
Q Consensus       419 ~~VtLtVrR~~~e  431 (530)
                      ..|.|+|.|+++.
T Consensus       103 ~~v~l~v~R~g~~  115 (117)
T 2fne_A          103 GTVTLMVLSSDET  115 (117)
T ss_dssp             SSEEEEEEECSCE
T ss_pred             CeEEEEEEeCCcc
Confidence            5699999987643

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.23  E-value=1.4e-11  Score=108.16  Aligned_cols=94  Identities=23%  Similarity=0.294  Sum_probs=81.5

Q ss_pred             cccceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCC-CCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGL-RFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGL-q~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      ..++.|.+.++...+|||.+....  .|++|..|.++|+|+++|| +.||+|++|||+.+.+++.+++..+++...+..+
T Consensus         7 ~~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v   86 (127)
T 1b8q_A            7 PNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH   86 (127)
T ss_dssp             CCSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCE
T ss_pred             CceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence            345678888877778999998754  4899999999999999998 9999999999999999877789999988778899


Q ss_pred             EEEEecCCceeeEEecc
Q psy9257         422 RVVIRDRPLERTVTLHR  438 (530)
Q Consensus       422 tLtVrR~~~e~tVtL~k  438 (530)
                      .|+|.|+++.+++++..
T Consensus        87 ~l~v~R~g~~~~~~~~~  103 (127)
T 1b8q_A           87 VVLILRGPEGFTTHLET  103 (127)
T ss_dssp             EEEEECCCCSEEECCCC
T ss_pred             EEEEEeCCceEEEEEEE
Confidence            99999998888777654

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.23  E-value=8e-11  Score=95.95  Aligned_cols=78  Identities=27%  Similarity=0.326  Sum_probs=65.4

Q ss_pred             eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRV  423 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtL  423 (530)
                      ++.+.|.. .+|||.+....   .|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++... ++.+.|
T Consensus         3 ~v~l~k~~-~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   81 (85)
T 2i04_A            3 HTKLRKSS-RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL   81 (85)
T ss_dssp             EEEEECBT-TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEE
T ss_pred             EEEEEECC-CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence            45556654 45999998743   469999999999999999 9999999999999999988888888888754 788888


Q ss_pred             EEec
Q psy9257         424 VIRD  427 (530)
Q Consensus       424 tVrR  427 (530)
                      +|.|
T Consensus        82 ~v~R   85 (85)
T 2i04_A           82 ELCR   85 (85)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8865

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.23  E-value=4.5e-11  Score=105.14  Aligned_cols=81  Identities=21%  Similarity=0.305  Sum_probs=70.6

Q ss_pred             cceEEEeccCCCeeEEEEEecC------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      .+.|.+.|+..++|||++.++.      .|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++.. +.
T Consensus        25 ~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~  103 (118)
T 3b76_A           25 EKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT-SS  103 (118)
T ss_dssp             EEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC-CS
T ss_pred             cEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            3466777777788999999753      579999999999999999 999999999999999999999999999875 67


Q ss_pred             eEEEEEecC
Q psy9257         420 NIRVVIRDR  428 (530)
Q Consensus       420 ~VtLtVrR~  428 (530)
                      .|.|+|.|.
T Consensus       104 ~v~L~v~R~  112 (118)
T 3b76_A          104 SIVLKALEV  112 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEC
Confidence            899998874

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.23  E-value=4e-11  Score=102.51  Aligned_cols=83  Identities=23%  Similarity=0.310  Sum_probs=70.7

Q ss_pred             cccceEEEeccCCCeeEEEEEe-cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCA-INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~-~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ..++.+.+.|.....||+.+.. .+.|++|..|.++|+|+++| |+.||+|++|||+.+.+++.+++..+++.. +..+.
T Consensus        11 ~~~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~   89 (97)
T 2ejy_A           11 HMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMIS   89 (97)
T ss_dssp             --CEEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEE
T ss_pred             CccEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEE
Confidence            3567888888878889999986 35799999999999999999 999999999999999987777788999875 56888


Q ss_pred             EEEecC
Q psy9257         423 VVIRDR  428 (530)
Q Consensus       423 LtVrR~  428 (530)
                      |+|.+.
T Consensus        90 L~V~~~   95 (97)
T 2ejy_A           90 LKVIPN   95 (97)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            888764

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=101.67  Aligned_cols=82  Identities=24%  Similarity=0.323  Sum_probs=68.9

Q ss_pred             ceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      +.+.+.+.. .+|||.+....  .|++|..|.++|+|+++||+.||+|++|||+.+.+++..++..+++...+..+.|+|
T Consensus        11 ~~~~l~~~~-~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v   89 (98)
T 2jxo_A           11 RLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV   89 (98)
T ss_dssp             EEEEEECTT-TCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEC
T ss_pred             EEEEEEeCC-CcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEE
Confidence            456666654 45999998654  599999999999999999999999999999999998788899999887667777888


Q ss_pred             ecCCc
Q psy9257         426 RDRPL  430 (530)
Q Consensus       426 rR~~~  430 (530)
                      .|+++
T Consensus        90 ~R~g~   94 (98)
T 2jxo_A           90 DRETD   94 (98)
T ss_dssp             CHHHH
T ss_pred             ECCch
Confidence            87643

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.22  E-value=5.9e-11  Score=100.55  Aligned_cols=84  Identities=19%  Similarity=0.325  Sum_probs=71.1

Q ss_pred             cccceEEEeccCCCeeEEEEEecCC-----cEEEEEeccCCHhhh-cCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-C
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAINE-----GVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKAA-P  417 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~~-----GV~Vs~V~pGSPAak-AGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~  417 (530)
                      ..++.+.+.+....+|||++.....     +++|..|.++++|++ +||+.||+|++|||+.+.+.+.+++..+++.. .
T Consensus         8 ~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~   87 (101)
T 2yt7_A            8 DNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKS   87 (101)
T ss_dssp             CCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTT
T ss_pred             CceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3456777777766789999986433     699999999999999 56999999999999999888888899999875 6


Q ss_pred             CCeEEEEEecC
Q psy9257         418 VNNIRVVIRDR  428 (530)
Q Consensus       418 G~~VtLtVrR~  428 (530)
                      ++.|+|+|.|.
T Consensus        88 g~~v~l~v~R~   98 (101)
T 2yt7_A           88 QTSVTLSIVHC   98 (101)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCeEEEEEEeC
Confidence            78999999875

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.22  E-value=4.3e-11  Score=101.87  Aligned_cols=82  Identities=23%  Similarity=0.416  Sum_probs=69.5

Q ss_pred             eEEEe-ccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         349 ELVLC-KDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       349 ~V~L~-K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      .+.+. +....+|||++...        ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++. .+
T Consensus        15 ~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g   93 (108)
T 2jre_A           15 SVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AG   93 (108)
T ss_dssp             EEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HC
T ss_pred             EEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CC
Confidence            45554 45677799999863        3589999999999999999 99999999999999999988788888877 67


Q ss_pred             CeEEEEEecCCce
Q psy9257         419 NNIRVVIRDRPLE  431 (530)
Q Consensus       419 ~~VtLtVrR~~~e  431 (530)
                      ..|.|+|.|+++.
T Consensus        94 ~~v~l~v~R~~~~  106 (108)
T 2jre_A           94 NPVRLLLIRRLPL  106 (108)
T ss_dssp             SEEEEEEEECCCC
T ss_pred             CeEEEEEEeCCcC
Confidence            8999999887644

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.22  E-value=3.6e-11  Score=105.32  Aligned_cols=88  Identities=22%  Similarity=0.397  Sum_probs=74.7

Q ss_pred             ccccceEEEeccCCCeeEEEEEec-------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAI-------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~-------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      ....+.|.+.+....+|||.+...       ..+++|..|.++++|+++| |+.||+|++|||+.+.+++.+++.++++.
T Consensus        13 ~~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             cceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            334567788888778899999853       3568999999999999999 99999999999999999777788888887


Q ss_pred             CC-CCeEEEEEecCCce
Q psy9257         416 AP-VNNIRVVIRDRPLE  431 (530)
Q Consensus       416 a~-G~~VtLtVrR~~~e  431 (530)
                      .. ++.|.|+|+|+...
T Consensus        93 ~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           93 SSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             HTTTTCEEEEEEEECCC
T ss_pred             CCCCCeEEEEEEECCcc
Confidence            65 78999999987654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.22  E-value=7.8e-12  Score=126.64  Aligned_cols=129  Identities=24%  Similarity=0.275  Sum_probs=96.0

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----------eccCCCeeEEEEEec--
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----------CKDASGLIGLRVCAI--  367 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----------~K~s~G~LG~~V~~~--  367 (530)
                      +++++++|++++++++..|+..++......     .|++||++.+.++++..           .+..+++||+.+...  
T Consensus       164 ~d~~~~~G~SGGPl~~~~G~vVGI~s~~~~-----~g~~~aip~~~i~~~l~~~~~~~~~~g~~~~~r~~lGv~~~~l~~  238 (325)
T 1lcy_A          164 TDAAIDFGNAGGPLVNLDGEVIGVNTMKVT-----AGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSP  238 (325)
T ss_dssp             ESSCCSTTTTTSEEEETTSCEEEEEEEEEE-----TTEEEEEEHHHHHHHTCC---------------EECCEEEEECCH
T ss_pred             EcCCCCCCCccccEECCCCEEEEEEeEeec-----CCeeEEEEHHHHHHHHHHhhhcccccccccccccccceEeecCCH
Confidence            678888888888887777676666443332     46788886554443321           134567899988752  


Q ss_pred             ----------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCce
Q psy9257         368 ----------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE  431 (530)
Q Consensus       368 ----------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e  431 (530)
                                      ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +.++++.  ++.+.|+|+|+++.
T Consensus       239 ~~~~~~~l~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~--l~~~l~~--~~~v~l~v~R~g~~  314 (325)
T 1lcy_A          239 SILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED--VYEAVRT--QSQLAVQIRRGRET  314 (325)
T ss_dssp             HHHHHHTTSCTTSCCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH--HHHHHTT--CSSEEEEEEETTEE
T ss_pred             HHHHhhCccccccccCCCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCHHH--HHHHHhC--CCeEEEEEEECCEE
Confidence                            258999999999999999999999999999999988644  6677754  57899999999988


Q ss_pred             eeEEecc
Q psy9257         432 RTVTLHR  438 (530)
Q Consensus       432 ~tVtL~k  438 (530)
                      +++++..
T Consensus       315 ~~~~v~~  321 (325)
T 1lcy_A          315 LTLYVTP  321 (325)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEE
Confidence            8887754

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.22  E-value=3.2e-11  Score=106.16  Aligned_cols=86  Identities=20%  Similarity=0.410  Sum_probs=73.6

Q ss_pred             cceEEEeccCCCeeEEEEEe--------cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         347 IRELVLCKDASGLIGLRVCA--------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~--------~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      ...|.+.+....+|||.+..        ...|++|..|.++|+|+++| |+.||+|++|||+.+.+++.+++..+++. .
T Consensus        16 ~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~   94 (129)
T 2dmz_A           16 TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-A   94 (129)
T ss_dssp             EEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-C
T ss_pred             EEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C
Confidence            34566666667789999987        34789999999999999999 99999999999999999888889999988 7


Q ss_pred             CCeEEEEEecCCceee
Q psy9257         418 VNNIRVVIRDRPLERT  433 (530)
Q Consensus       418 G~~VtLtVrR~~~e~t  433 (530)
                      +..|.|+|.|+++.++
T Consensus        95 ~~~v~l~v~R~~~~~~  110 (129)
T 2dmz_A           95 GQVVHLTLVRRKTSSS  110 (129)
T ss_dssp             CSSEEEEEEEESSSSS
T ss_pred             CCeEEEEEEeCCcccc
Confidence            8899999998765433

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.22  E-value=7.1e-11  Score=102.00  Aligned_cols=82  Identities=24%  Similarity=0.391  Sum_probs=69.3

Q ss_pred             cceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      .+.|.+.+.. .+|||++...   ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++. .+..|.
T Consensus        25 ~~~v~l~~~~-~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~  102 (112)
T 2r4h_A           25 FYTVELERGA-KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN-GGRRVR  102 (112)
T ss_dssp             EEEEEEECBT-TBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TTTEEE
T ss_pred             eEEEEEEcCC-CccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEE
Confidence            4466676664 4599999864   4689999999999999999 99999999999999999988888888876 578899


Q ss_pred             EEEecCCc
Q psy9257         423 VVIRDRPL  430 (530)
Q Consensus       423 LtVrR~~~  430 (530)
                      |+|.|++.
T Consensus       103 l~v~R~~~  110 (112)
T 2r4h_A          103 LFLKRGET  110 (112)
T ss_dssp             EEEECCEE
T ss_pred             EEEEeCCc
Confidence            99988653

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=2e-11  Score=105.97  Aligned_cols=90  Identities=27%  Similarity=0.350  Sum_probs=75.8

Q ss_pred             cccccceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhc--CCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLV--GLRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakA--GLq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      .....+.|.+.|...+.|||.+....   .|++|..|.++|+|+++  ||+.||+|++|||+.+.++++.++..+++...
T Consensus        12 ~~~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~   91 (119)
T 2cs5_A           12 PHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   91 (119)
T ss_dssp             CSSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            44556778888888888999998643   47999999999999999  99999999999999999999888888887654


Q ss_pred             C---CeEEEEEecCCcee
Q psy9257         418 V---NNIRVVIRDRPLER  432 (530)
Q Consensus       418 G---~~VtLtVrR~~~e~  432 (530)
                      +   ..|.|+|.|+....
T Consensus        92 ~~~~~~v~l~v~R~~~~~  109 (119)
T 2cs5_A           92 ERHSGELMLLVRPNAVYD  109 (119)
T ss_dssp             HCCSSCEEEEEECCCCCC
T ss_pred             ccCCCEEEEEEEcccccC
Confidence            3   57999999875443

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.21  E-value=9.7e-11  Score=97.51  Aligned_cols=80  Identities=24%  Similarity=0.392  Sum_probs=68.3

Q ss_pred             ceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         348 RELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      ..+.+.+. ..+|||++...      ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++. .+..
T Consensus         7 ~~v~l~k~-~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~   84 (96)
T 1d5g_A            7 FEVELAKN-DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQV   84 (96)
T ss_dssp             EEEEEECS-SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSE
T ss_pred             EEEEEEeC-CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence            45666665 46699999863      2589999999999999999 99999999999999999988888888876 5788


Q ss_pred             EEEEEecCC
Q psy9257         421 IRVVIRDRP  429 (530)
Q Consensus       421 VtLtVrR~~  429 (530)
                      +.|+|.|++
T Consensus        85 v~l~v~R~~   93 (96)
T 1d5g_A           85 VHLLLEKGQ   93 (96)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEEcCC
Confidence            999998864

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=6.4e-11  Score=103.19  Aligned_cols=86  Identities=21%  Similarity=0.338  Sum_probs=73.8

Q ss_pred             cccceEEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      ...+.|.+.+....+|||.+....    .+++|..|.++++|+++| |+.||+|++|||+.+.+++.+++.++++. .+.
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~   92 (117)
T 1v62_A           14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS-ISE   92 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS-CSS
T ss_pred             CCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCC
Confidence            345678888877677999998752    349999999999999999 99999999999999999888889999985 689


Q ss_pred             eEEEEEecCCce
Q psy9257         420 NIRVVIRDRPLE  431 (530)
Q Consensus       420 ~VtLtVrR~~~e  431 (530)
                      .|.|+|.|+.++
T Consensus        93 ~v~l~v~r~~~~  104 (117)
T 1v62_A           93 KVRLEILPVPQS  104 (117)
T ss_dssp             EEEEEECCBTTB
T ss_pred             eEEEEEEECCCC
Confidence            999999987543

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.21  E-value=4.1e-11  Score=101.71  Aligned_cols=85  Identities=28%  Similarity=0.379  Sum_probs=72.1

Q ss_pred             cceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .|.+.+.+.....+||.+...  ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+.++..+++. .++.|.|+
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~   80 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK-SGNSVTLL   80 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHH-TTTEEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEE
Confidence            467778887777788888754  358999999999999999999999999999999999997778888875 57899999


Q ss_pred             EecCCcee
Q psy9257         425 IRDRPLER  432 (530)
Q Consensus       425 VrR~~~e~  432 (530)
                      |.|++...
T Consensus        81 v~r~~~~~   88 (106)
T 3ngh_A           81 VLDGDSYE   88 (106)
T ss_dssp             EECHHHHH
T ss_pred             EEECCeee
Confidence            99865443

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.21  E-value=1.3e-11  Score=102.24  Aligned_cols=83  Identities=25%  Similarity=0.385  Sum_probs=68.1

Q ss_pred             cceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .|.|.+.|+.. +|||.+...  ..|++|..|.++|+|+++||+.||+|++|||+.+.+++.+++..+++.. ++.+.|+
T Consensus         4 pr~v~l~k~~~-~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~   81 (91)
T 2vsp_A            4 PKLCRLAKGEN-GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLL   81 (91)
T ss_dssp             EEEEEEECBTT-BTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEE
T ss_pred             cEEEEEEeCCC-cccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEE
Confidence            46777888765 599999753  3689999999999999999999999999999999988888899999776 8899999


Q ss_pred             EecCCce
Q psy9257         425 IRDRPLE  431 (530)
Q Consensus       425 VrR~~~e  431 (530)
                      |.|++.+
T Consensus        82 v~r~~~~   88 (91)
T 2vsp_A           82 VCGKKAQ   88 (91)
T ss_dssp             EEC----
T ss_pred             EEeCCcc
Confidence            9987543

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.21  E-value=1.2e-10  Score=95.41  Aligned_cols=72  Identities=19%  Similarity=0.362  Sum_probs=63.0

Q ss_pred             CCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         357 SGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       357 ~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      .++|||++..+   ..+++|..|.++|+|+++||+.||+|++|||+.+.++.+.++..+++.. +..+.|+|.|++
T Consensus        12 ~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g   86 (88)
T 2uzc_A           12 PAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES   86 (88)
T ss_dssp             SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence            45699999863   3579999999999999999999999999999999999877788888765 788999998864

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.21  E-value=6.2e-11  Score=100.74  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=69.3

Q ss_pred             cceEEEeccCCCeeEEEEEecC---------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN---------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~---------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      .+.|.+.|....+|||++....         .|++|..|.++|+|+ +||+.||+|++|||+.+.++.+......++ ..
T Consensus         8 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~   85 (107)
T 2h2b_A            8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KS   85 (107)
T ss_dssp             EEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TC
T ss_pred             eEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CC
Confidence            4577888887778999998643         499999999999999 999999999999999999998866555554 45


Q ss_pred             CCeEEEEEecCCce
Q psy9257         418 VNNIRVVIRDRPLE  431 (530)
Q Consensus       418 G~~VtLtVrR~~~e  431 (530)
                      ++.+.|+|.|+++.
T Consensus        86 g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           86 GKNAKITIRRKKGG   99 (107)
T ss_dssp             CSEEEEEEEEESCC
T ss_pred             CCEEEEEEEECCCC
Confidence            78899999886543

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.20  E-value=1.5e-11  Score=109.28  Aligned_cols=86  Identities=21%  Similarity=0.345  Sum_probs=73.8

Q ss_pred             ccccceEEEeccCCCeeEEEEEecC------CcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAIN------EGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      ....+.|.+.|.. .+|||++.++.      .+++|..|.++++|+++ ||+.||+|++|||+.+.+++++++..+++..
T Consensus        27 ~~~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  105 (130)
T 1i16_A           27 EATVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             SEEEEEEEEETTS-SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CCcEEEEEEEcCC-CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4456677777764 56999999743      47999999999999999 8999999999999999999999999999988


Q ss_pred             CCCeEEEEEecCCc
Q psy9257         417 PVNNIRVVIRDRPL  430 (530)
Q Consensus       417 ~G~~VtLtVrR~~~  430 (530)
                      .+..|.|+|+|+..
T Consensus       106 ~~~~v~l~v~r~~~  119 (130)
T 1i16_A          106 PDGPVTIVIRRKSL  119 (130)
T ss_dssp             CSSEEEEEEEEESS
T ss_pred             CCceEEEEEEeCCC
Confidence            77889999988643

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.20  E-value=3e-11  Score=104.76  Aligned_cols=85  Identities=18%  Similarity=0.195  Sum_probs=71.7

Q ss_pred             ccceEEEeccCCCeeEEEEEec---------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI---------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~---------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      ..+.|.+.+....+|||.+...         ..|++|..|.++++|+ +||+.||+|++|||+.+.++++.++..+++. 
T Consensus        14 ~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-   91 (117)
T 2csj_A           14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-   91 (117)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-
T ss_pred             eEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc-
Confidence            3456777777767899999874         3579999999999997 9999999999999999999998888888877 


Q ss_pred             CCCeEEEEEecCCcee
Q psy9257         417 PVNNIRVVIRDRPLER  432 (530)
Q Consensus       417 ~G~~VtLtVrR~~~e~  432 (530)
                      .++.|.|+|.|+....
T Consensus        92 ~~~~v~l~v~R~~~~~  107 (117)
T 2csj_A           92 SGKIAAIVVKRPRKVQ  107 (117)
T ss_dssp             SCSEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEECCccc
Confidence            4789999998865443

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.20  E-value=4.7e-11  Score=102.30  Aligned_cols=83  Identities=30%  Similarity=0.498  Sum_probs=70.5

Q ss_pred             cceEEEeccCCCeeEEEEEecC-CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN-EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~-~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .+.|.+.+.. .+|||.+.... .|++|..|.++++|+++| |+.||+|++|||+.+.+++..++..+++.. ++.|.|+
T Consensus        16 ~~~v~l~~~~-~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~   93 (111)
T 2dlu_A           16 VEEVELINDG-SGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC-GNSVRML   93 (111)
T ss_dssp             EEEEEEECCS-SCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH-CSEEEEE
T ss_pred             eEEEEEEeCC-CccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEE
Confidence            3567777654 45999998754 799999999999999999 999999999999999998888888888764 6889999


Q ss_pred             EecCCce
Q psy9257         425 IRDRPLE  431 (530)
Q Consensus       425 VrR~~~e  431 (530)
                      |+|++..
T Consensus        94 v~R~~~~  100 (111)
T 2dlu_A           94 VARDPAG  100 (111)
T ss_dssp             EEESCTT
T ss_pred             EEeCCCC
Confidence            9887554

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.20  E-value=7.4e-11  Score=98.38  Aligned_cols=79  Identities=25%  Similarity=0.370  Sum_probs=66.3

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .|.|.+.++. .+|||.+.. ..|++|..|.++++|+++||+.||+|++|||+.+.++.+.++...++  .++.|.|+|.
T Consensus         9 ~r~v~l~~~~-~~~G~~l~~-~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~   84 (93)
T 2dls_A            9 QRCVIIQKDQ-HGFGFTVSG-DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLL   84 (93)
T ss_dssp             EEEEEEECSS-SSCCEEEEC-SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEE
T ss_pred             CEEEEEEeCC-CceeEEEeC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEE
Confidence            3466677764 459999974 57999999999999999999999999999999999998866666664  4789999998


Q ss_pred             cCC
Q psy9257         427 DRP  429 (530)
Q Consensus       427 R~~  429 (530)
                      |++
T Consensus        85 R~~   87 (93)
T 2dls_A           85 GSS   87 (93)
T ss_dssp             CCC
T ss_pred             ECC
Confidence            864

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.20  E-value=9.8e-11  Score=99.70  Aligned_cols=82  Identities=24%  Similarity=0.407  Sum_probs=70.9

Q ss_pred             cceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ++.|.+.+...++|||++...   ..|++|..|.++|+|+++ ||+.||+|++|||+.+.+++..++..+++... ..|.
T Consensus        10 ~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~-~~v~   88 (103)
T 2dc2_A           10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIE   88 (103)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC-SEEE
T ss_pred             cEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEE
Confidence            457778787778899999874   358999999999999995 99999999999999999999989999998764 5899


Q ss_pred             EEEecCC
Q psy9257         423 VVIRDRP  429 (530)
Q Consensus       423 LtVrR~~  429 (530)
                      |+|.|..
T Consensus        89 l~v~~~~   95 (103)
T 2dc2_A           89 FEVVYVA   95 (103)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9988753

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=7.9e-11  Score=99.60  Aligned_cols=81  Identities=26%  Similarity=0.324  Sum_probs=68.9

Q ss_pred             ceEEEeccCCCeeEEEEEec-----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         348 RELVLCKDASGLIGLRVCAI-----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~-----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      +.+.+.+.. .+|||.+...     ..+++|..|.++++|+++| |+.||+|++|||+.+.+++..++..+++. .+..|
T Consensus        13 ~~v~l~~~~-~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v   90 (104)
T 2djt_A           13 FSVELVRGY-AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQL   90 (104)
T ss_dssp             EEEEEECCS-SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEE
T ss_pred             EEEEEEeCC-CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeE
Confidence            356666664 5699999862     5789999999999999999 99999999999999999988778888877 57889


Q ss_pred             EEEEecCCc
Q psy9257         422 RVVIRDRPL  430 (530)
Q Consensus       422 tLtVrR~~~  430 (530)
                      .|+|.|+++
T Consensus        91 ~l~v~R~g~   99 (104)
T 2djt_A           91 HLVIRRPLS   99 (104)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEEECCC
Confidence            999988654

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.19  E-value=1.6e-10  Score=98.83  Aligned_cols=81  Identities=19%  Similarity=0.341  Sum_probs=68.3

Q ss_pred             EEEeccCCCeeEEEEEecC------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeE
Q psy9257         350 LVLCKDASGLIGLRVCAIN------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNI  421 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~V  421 (530)
                      +.+.+. ..+|||.+....      .|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++.. .+..|
T Consensus        15 ~~l~~~-~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v   93 (111)
T 2koj_A           15 IQLKKG-TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTV   93 (111)
T ss_dssp             EEEECB-TTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEE
T ss_pred             EEEEEC-CCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeE
Confidence            334443 456999998754      689999999999999999 999999999999999999888888899875 47899


Q ss_pred             EEEEecCCce
Q psy9257         422 RVVIRDRPLE  431 (530)
Q Consensus       422 tLtVrR~~~e  431 (530)
                      .|+|.|+++.
T Consensus        94 ~l~v~R~~~~  103 (111)
T 2koj_A           94 SLLVFRQEEA  103 (111)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEeCCCC
Confidence            9999887543

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-10  Score=96.52  Aligned_cols=82  Identities=30%  Similarity=0.468  Sum_probs=69.5

Q ss_pred             ccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      ..|.|.+.|.. .+|||++...   ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++.. +..+
T Consensus         5 ~~r~v~l~k~~-~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v   82 (93)
T 2dkr_A            5 SSGVVELPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSV   82 (93)
T ss_dssp             CSCEEEEECCT-TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-CSEE
T ss_pred             CCEEEEEEeCC-CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcE
Confidence            35678887764 6699999853   4789999999999999996 999999999999999998888888888765 4679


Q ss_pred             EEEEecCC
Q psy9257         422 RVVIRDRP  429 (530)
Q Consensus       422 tLtVrR~~  429 (530)
                      .|+|+|++
T Consensus        83 ~l~v~r~~   90 (93)
T 2dkr_A           83 KLVVRSGP   90 (93)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCC
Confidence            99998865

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.19  E-value=1.2e-10  Score=98.94  Aligned_cols=81  Identities=23%  Similarity=0.426  Sum_probs=67.9

Q ss_pred             ceEEEeccCCCeeEEEEEe------cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         348 RELVLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~------~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      ..|.+ +. ..+|||++..      ...|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++. .++.
T Consensus        13 ~~v~l-~~-~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~   89 (106)
T 3axa_A           13 ITVTL-KK-QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSV   89 (106)
T ss_dssp             EEEEE-EC-SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSE
T ss_pred             EEEEE-CC-CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence            34555 44 5569999975      23689999999999999999 99999999999999999888888888866 5789


Q ss_pred             EEEEEecCCce
Q psy9257         421 IRVVIRDRPLE  431 (530)
Q Consensus       421 VtLtVrR~~~e  431 (530)
                      |.|+|.|++..
T Consensus        90 v~l~v~R~~~~  100 (106)
T 3axa_A           90 VTLEVAKQGAI  100 (106)
T ss_dssp             EEEEEECCCSS
T ss_pred             EEEEEEeCCcc
Confidence            99999987543

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.19  E-value=1.2e-10  Score=102.90  Aligned_cols=82  Identities=23%  Similarity=0.382  Sum_probs=70.5

Q ss_pred             ceEEEeccCCCeeEEEEEec------------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHH
Q psy9257         348 RELVLCKDASGLIGLRVCAI------------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILK  414 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~------------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk  414 (530)
                      +.+.+.+..+++|||.+.+.            ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++.+++..+++
T Consensus        26 ~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  105 (123)
T 2iwq_A           26 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR  105 (123)
T ss_dssp             EEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            56777777788999999753            2589999999999999999 9999999999999999988888999998


Q ss_pred             hCCCCeEEEEEecCCc
Q psy9257         415 AAPVNNIRVVIRDRPL  430 (530)
Q Consensus       415 ~a~G~~VtLtVrR~~~  430 (530)
                      .. +..+.|+|.|...
T Consensus       106 ~~-~~~v~l~v~r~~~  120 (123)
T 2iwq_A          106 KA-GNPVVFMVQSIIS  120 (123)
T ss_dssp             HC-CSSEEEEEECCCC
T ss_pred             cC-CCeEEEEEEECCc
Confidence            76 4589999988543

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=9.9e-11  Score=101.33  Aligned_cols=88  Identities=24%  Similarity=0.426  Sum_probs=71.0

Q ss_pred             eEEEeccCCCeeEEEEEec-CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257         349 ELVLCKDASGLIGLRVCAI-NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD  427 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~-~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR  427 (530)
                      .|.+.+.. ..|||.+... +.|++|..|.++++|+++||+.||+|++|||+.+.++.+.+...++ ...++.+.|+|+|
T Consensus        22 ~v~l~~~~-~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~-~~~g~~v~l~v~r   99 (117)
T 1uit_A           22 HVKVQKGS-EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLII-GQQCDTITILAQY   99 (117)
T ss_dssp             EEEEECSS-CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHT-TSCCSEEEEEECC
T ss_pred             EEEEEeCC-CCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH-HcCCCeEEEEEEE
Confidence            45555553 5699999875 5799999999999999999999999999999999999886555444 3567899999999


Q ss_pred             CCceeeEEecc
Q psy9257         428 RPLERTVTLHR  438 (530)
Q Consensus       428 ~~~e~tVtL~k  438 (530)
                      +++.+++.+..
T Consensus       100 ~~~~~~~~~~~  110 (117)
T 1uit_A          100 NPHVHQLSSHS  110 (117)
T ss_dssp             CSCCCCCCCCC
T ss_pred             CCchhhhhhcc
Confidence            88776655443

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.19  E-value=6.4e-11  Score=100.00  Aligned_cols=83  Identities=23%  Similarity=0.380  Sum_probs=70.1

Q ss_pred             ccceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..|.|.+.+... +|||.+...  ..|++|..|.++|+|+++||+.||+|++|||+.+.++...++..+++. .++.+.|
T Consensus         6 ~~r~v~l~k~~~-g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l   83 (102)
T 2d90_A            6 SGRVVVIKKGSN-GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTL   83 (102)
T ss_dssp             SSEEEEEECCSS-SSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEE
T ss_pred             CCEEEEEeeCCC-CccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEE
Confidence            346777877654 599999864  478999999999999999999999999999999999887778888876 4789999


Q ss_pred             EEecCCc
Q psy9257         424 VIRDRPL  430 (530)
Q Consensus       424 tVrR~~~  430 (530)
                      +|.|++.
T Consensus        84 ~v~r~~~   90 (102)
T 2d90_A           84 LVLDKEA   90 (102)
T ss_dssp             EECSTTC
T ss_pred             EEEECCC
Confidence            9977543

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.19  E-value=2.2e-11  Score=106.68  Aligned_cols=92  Identities=23%  Similarity=0.269  Sum_probs=75.8

Q ss_pred             cceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .+.+.+.+.. .+|||.+....  .|++|..|.++|+|+++||+.||+|++|||..+.+++..++..+++...+..+.|+
T Consensus        10 ~r~v~l~~~~-~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~   88 (128)
T 2kjd_A           10 PRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV   88 (128)
T ss_dssp             CEEEEEECCS-SSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEE
T ss_pred             cEEEEEecCC-CcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence            4556666665 45999998654  58999999999999999999999999999999999877788999988777788899


Q ss_pred             EecCCceee--EEeccC
Q psy9257         425 IRDRPLERT--VTLHRD  439 (530)
Q Consensus       425 VrR~~~e~t--VtL~kd  439 (530)
                      |.|+++.+.  +++...
T Consensus        89 v~R~g~~~~~~~~l~~~  105 (128)
T 2kjd_A           89 VDRETDEFFKKCRVIPS  105 (128)
T ss_dssp             ECHHHHHHHHHHTCCCC
T ss_pred             EEeCCcceEEEEEEEec
Confidence            999776655  555443

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.18  E-value=1.9e-11  Score=105.52  Aligned_cols=88  Identities=26%  Similarity=0.356  Sum_probs=72.8

Q ss_pred             eEEEeccCCCeeEEEEEe--cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         349 ELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~--~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .+.+.+.....|||.+..  ...|++|..|.++|+|+++||+.||+|++|||+.+.+++..++..+++.. ++.|.|+|.
T Consensus        16 ~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~   94 (114)
T 2edz_A           16 ECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS-GNSVTLLVL   94 (114)
T ss_dssp             EEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHT-CSEEEEEEE
T ss_pred             EEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEE
Confidence            455555556668887775  35799999999999999999999999999999999998888888888774 899999999


Q ss_pred             cCCceeeEEec
Q psy9257         427 DRPLERTVTLH  437 (530)
Q Consensus       427 R~~~e~tVtL~  437 (530)
                      |+++..++++.
T Consensus        95 R~~~~~~~~~~  105 (114)
T 2edz_A           95 DGDSYEKAVKN  105 (114)
T ss_dssp             CHHHHHHHHHH
T ss_pred             ECCcceehhhc
Confidence            97766655544

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.18  E-value=5.2e-11  Score=106.12  Aligned_cols=87  Identities=26%  Similarity=0.486  Sum_probs=71.8

Q ss_pred             cccccceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      ....++.+.+.++....|||.+.++      ..|++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+++.
T Consensus        33 l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~  112 (131)
T 1wfg_A           33 LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILE  112 (131)
T ss_dssp             EECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3334444555556677899999752      2389999999999999999 99999999999999999988889999988


Q ss_pred             C-CCCeEEEEEecCC
Q psy9257         416 A-PVNNIRVVIRDRP  429 (530)
Q Consensus       416 a-~G~~VtLtVrR~~  429 (530)
                      . .+..|.|+|.|++
T Consensus       113 ~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A          113 SKPEPQVELVVSRSG  127 (131)
T ss_dssp             TSSSSEEEEEEEEEC
T ss_pred             cCCCCEEEEEEEcCC
Confidence            6 5688999998854

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.18  E-value=8.4e-11  Score=100.26  Aligned_cols=79  Identities=27%  Similarity=0.443  Sum_probs=67.5

Q ss_pred             eEEEeccCCCeeEEEEEe---------cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         349 ELVLCKDASGLIGLRVCA---------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~---------~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      .|.+.+.. .+|||++..         ...|++|..|.++++|+++| |+.||+|++|||+.+.++++.++..+++.. +
T Consensus        12 ~v~l~k~~-~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~   89 (107)
T 1wf8_A           12 PVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-K   89 (107)
T ss_dssp             EEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC-C
T ss_pred             EEEEEECC-CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-C
Confidence            45555654 469999987         24689999999999999999 999999999999999999888888888774 7


Q ss_pred             CeEEEEEecCC
Q psy9257         419 NNIRVVIRDRP  429 (530)
Q Consensus       419 ~~VtLtVrR~~  429 (530)
                      ..|.|+|.|+.
T Consensus        90 ~~v~l~v~R~~  100 (107)
T 1wf8_A           90 GNVRFVIGREK  100 (107)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            89999998854

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.18  E-value=7.8e-11  Score=97.00  Aligned_cols=75  Identities=24%  Similarity=0.316  Sum_probs=62.8

Q ss_pred             cCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCC
Q psy9257         355 DASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRP  429 (530)
Q Consensus       355 ~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~  429 (530)
                      ....+|||.+.....|++|..|.++|+|+++||+.||+|++|||+.+.+.+..++..+++. ..+..+.|+|.|++
T Consensus        14 ~~~~~lG~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           14 GKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             TCSSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCcccEEEEecCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            3445799999877889999999999999999999999999999999955555567777764 35688999998864

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.18  E-value=1.2e-10  Score=103.01  Aligned_cols=87  Identities=25%  Similarity=0.445  Sum_probs=73.0

Q ss_pred             cccccceEEEeccC-CCeeEEEEEecC------------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHH
Q psy9257         343 VTNGIRELVLCKDA-SGLIGLRVCAIN------------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQ  408 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s-~G~LG~~V~~~~------------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~  408 (530)
                      .....+.|.+.|.. .++|||++....            .|++|..|.++|+|+++| |+.||+|++|||+.+.+++.++
T Consensus        26 ~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~  105 (128)
T 1nf3_C           26 LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQ  105 (128)
T ss_dssp             SCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHH
T ss_pred             CCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            34556778888764 577999998542            489999999999999999 9999999999999999989988


Q ss_pred             HHHHHHhCCCCeEEEEEecCCc
Q psy9257         409 VHKILKAAPVNNIRVVIRDRPL  430 (530)
Q Consensus       409 v~~LLk~a~G~~VtLtVrR~~~  430 (530)
                      +..+++.. +..|.|+|+|.++
T Consensus       106 ~~~~l~~~-~~~v~l~v~r~~~  126 (128)
T 1nf3_C          106 VTDMMIAN-SRNLIITVRPANQ  126 (128)
T ss_dssp             HHHHHHHT-TTSEEEEEECCCC
T ss_pred             HHHHHHcC-CCeEEEEEEECCc
Confidence            99999865 5679999988653

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.18  E-value=1.4e-10  Score=94.90  Aligned_cols=80  Identities=25%  Similarity=0.406  Sum_probs=68.1

Q ss_pred             cceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhh-cCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAak-AGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ++.+.+.+.....|||.+...   ..+++|..|.++|+|++ +||+.||+|++|||+.+.++++.++..+++.. +..+.
T Consensus         3 ~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~   81 (87)
T 4e34_A            3 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIE   81 (87)
T ss_dssp             CEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHC-CSEEE
T ss_pred             EEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEE
Confidence            457788887777899999864   25799999999999999 69999999999999999999998899988764 56788


Q ss_pred             EEEec
Q psy9257         423 VVIRD  427 (530)
Q Consensus       423 LtVrR  427 (530)
                      |+|++
T Consensus        82 l~v~~   86 (87)
T 4e34_A           82 FEVVY   86 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87753

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=9.4e-11  Score=101.21  Aligned_cols=82  Identities=23%  Similarity=0.331  Sum_probs=70.6

Q ss_pred             ccceEEEeccCCCeeEEEEEecC-----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC--
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN-----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP--  417 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~-----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~--  417 (530)
                      ..+.+.+.|.  .+|||++.++.     .+++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+++...  
T Consensus        15 ~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r   92 (109)
T 1wi4_A           15 AFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   92 (109)
T ss_dssp             TEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             cEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccC
Confidence            4556777664  56999998632     379999999999999999 9999999999999999999999999999887  


Q ss_pred             -CCeEEEEEecCC
Q psy9257         418 -VNNIRVVIRDRP  429 (530)
Q Consensus       418 -G~~VtLtVrR~~  429 (530)
                       +..++|.+.|++
T Consensus        93 ~~~~~~l~v~R~~  105 (109)
T 1wi4_A           93 SESPWEIAFIRSG  105 (109)
T ss_dssp             SSSCEEEEEECCC
T ss_pred             CCceEEEEEEeCC
Confidence             788888888764

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.18  E-value=8.4e-11  Score=96.79  Aligned_cols=80  Identities=23%  Similarity=0.444  Sum_probs=67.3

Q ss_pred             ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIR  422 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~Vt  422 (530)
                      +.|.+.+.. .+|||++....   .+++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++... +..|.
T Consensus         4 ~~v~l~~~~-~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~   82 (90)
T 2q9v_A            4 QDIFLWRKE-TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVN   82 (90)
T ss_dssp             EEEEEECBT-TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEE
T ss_pred             EEEEEEECC-CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence            466777765 45999998642   679999999999999999 9999999999999999888888888887654 34799


Q ss_pred             EEEecC
Q psy9257         423 VVIRDR  428 (530)
Q Consensus       423 LtVrR~  428 (530)
                      |+|.|+
T Consensus        83 l~v~R~   88 (90)
T 2q9v_A           83 LTVRQT   88 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            998875

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.18  E-value=3.4e-11  Score=102.22  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=68.6

Q ss_pred             ceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEE
Q psy9257         348 RELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIR  422 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~Vt  422 (530)
                      +.+.+.+. ..+|||.+...   ..+++|..|.++++|+++| |+.||+|++|||+.+.+++.+++..+++... +..|.
T Consensus        11 ~~v~l~~~-~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~   89 (103)
T 1uep_A           11 LDVHLRRM-ESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVN   89 (103)
T ss_dssp             ECCEEESS-SSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEE
T ss_pred             EEEEEEeC-CCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEE
Confidence            34556664 55699999863   4789999999999999999 9999999999999999988888888887754 68899


Q ss_pred             EEEecCC
Q psy9257         423 VVIRDRP  429 (530)
Q Consensus       423 LtVrR~~  429 (530)
                      |+|+|+.
T Consensus        90 l~v~R~~   96 (103)
T 1uep_A           90 LTVRRKV   96 (103)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            9998864

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.17  E-value=5.9e-11  Score=104.45  Aligned_cols=85  Identities=26%  Similarity=0.405  Sum_probs=72.5

Q ss_pred             ccceEEEeccCCCeeEEEEEecC------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcC-CcCHHHHHHHHHhCC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVA-GYNMKQVHKILKAAP  417 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~-g~s~~~v~~LLk~a~  417 (530)
                      .++.|.+.+...++|||.+.+..      .|++|..|.++++|+++| |+.||+|++|||+.+. +++..++..+++. .
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~  103 (128)
T 2db5_A           25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-T  103 (128)
T ss_dssp             EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-C
T ss_pred             ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-C
Confidence            34567777877778999997532      389999999999999999 9999999999999997 8899889999987 5


Q ss_pred             CCeEEEEEecCCce
Q psy9257         418 VNNIRVVIRDRPLE  431 (530)
Q Consensus       418 G~~VtLtVrR~~~e  431 (530)
                      +..|.|+|.|++..
T Consensus       104 ~~~v~l~v~r~~~~  117 (128)
T 2db5_A          104 TGSLRLIVAREPVH  117 (128)
T ss_dssp             CSEEEEEEEECCCS
T ss_pred             CCeEEEEEEcCCCC
Confidence            78899999987543

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.17  E-value=8.1e-11  Score=101.88  Aligned_cols=83  Identities=19%  Similarity=0.356  Sum_probs=72.0

Q ss_pred             ccceEEEeccCCCeeEEEEEecC------------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHH
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN------------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKI  412 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~------------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~L  412 (530)
                      ..+.|.+.+.....|||.+.+..            .|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   94 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEA   94 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45678888887778999997643            589999999999999999 99999999999999999998888888


Q ss_pred             HHhCCCCeEEEEEecCC
Q psy9257         413 LKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       413 Lk~a~G~~VtLtVrR~~  429 (530)
                      ++. .+..+.|+|.|..
T Consensus        95 ~~~-~g~~v~l~v~r~~  110 (117)
T 2ehr_A           95 IKN-AGNPVVFIVQSLS  110 (117)
T ss_dssp             HHT-SCSSEEEEECCBS
T ss_pred             HHc-CCCeEEEEEEECC
Confidence            876 4788999998754

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.17  E-value=4.3e-11  Score=99.80  Aligned_cols=81  Identities=19%  Similarity=0.271  Sum_probs=67.6

Q ss_pred             EEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         350 LVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      +.+.+...++|||++....   .|++|..|.++|+|+++||+.||+|++|||+.+.++++.++..+++... ..+.|+|+
T Consensus         8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~   86 (94)
T 1vb7_A            8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLD   86 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEE
T ss_pred             EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEE
Confidence            3333334567999998643   5899999999999999999999999999999999998888888888765 88999999


Q ss_pred             cCCce
Q psy9257         427 DRPLE  431 (530)
Q Consensus       427 R~~~e  431 (530)
                      |+++.
T Consensus        87 R~g~~   91 (94)
T 1vb7_A           87 RSSGP   91 (94)
T ss_dssp             CCCCC
T ss_pred             ECCcC
Confidence            97654

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=1.7e-10  Score=101.09  Aligned_cols=83  Identities=24%  Similarity=0.251  Sum_probs=70.6

Q ss_pred             ccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCe
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNN  420 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~  420 (530)
                      ....|.+.+. ..+|||++...   ..|++|..|.++++|+++| |+.||+|++|||+.+.+++.+++..+++... +..
T Consensus        19 ~~~~v~l~~~-~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~   97 (123)
T 1ueq_A           19 TFLSTTLKKS-NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS   97 (123)
T ss_dssp             EEEEEEEECC-TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred             cEEEEEEEeC-CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            3445666666 44599999863   3579999999999999999 9999999999999999988888999998764 789


Q ss_pred             EEEEEecCC
Q psy9257         421 IRVVIRDRP  429 (530)
Q Consensus       421 VtLtVrR~~  429 (530)
                      |.|+|.|+.
T Consensus        98 v~l~v~R~~  106 (123)
T 1ueq_A           98 VNLVLCRGY  106 (123)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEeCC
Confidence            999998864

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.17  E-value=9.7e-11  Score=98.21  Aligned_cols=79  Identities=34%  Similarity=0.391  Sum_probs=65.4

Q ss_pred             EEEeccCCCeeEEEEEecC----------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         350 LVLCKDASGLIGLRVCAIN----------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~----------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      +.+.+. ..+|||++....          .|++|..|.++|+|+++||+.||+|++|||+.+.+++.+++..+++. .++
T Consensus         6 v~l~~~-~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~   83 (99)
T 3khf_A            6 IVIHSS-GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK-SGN   83 (99)
T ss_dssp             EEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCS
T ss_pred             EEEEeC-CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCC
Confidence            444453 566899988532          27799999999999999999999999999999998888888888874 578


Q ss_pred             eEEEEEecCCc
Q psy9257         420 NIRVVIRDRPL  430 (530)
Q Consensus       420 ~VtLtVrR~~~  430 (530)
                      .+.|+|.|.++
T Consensus        84 ~v~l~v~r~~~   94 (99)
T 3khf_A           84 KISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECSCS
T ss_pred             EEEEEEEECCC
Confidence            99999998654

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=1.6e-10  Score=98.59  Aligned_cols=82  Identities=30%  Similarity=0.470  Sum_probs=69.4

Q ss_pred             ccceEEEeccCCCeeEEEEEec-----------CCcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHH
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI-----------NEGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKIL  413 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~-----------~~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LL  413 (530)
                      ..++|.+.|. .++|||++...           ..|++|..|.++++|+++ ||+.||+|++|||+.+.++++.++..++
T Consensus         8 ~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~   86 (107)
T 1uhp_A            8 KSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             EEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3456777776 66799999863           368999999999999999 8999999999999999999998888888


Q ss_pred             HhCCCCeEEEEEecCC
Q psy9257         414 KAAPVNNIRVVIRDRP  429 (530)
Q Consensus       414 k~a~G~~VtLtVrR~~  429 (530)
                      +.. +..|.|+|.|+.
T Consensus        87 ~~~-~~~v~l~v~R~~  101 (107)
T 1uhp_A           87 KTA-KEPIVVQVLRRT  101 (107)
T ss_dssp             HHC-CSSEEEEEEECC
T ss_pred             HcC-CCcEEEEEEeCC
Confidence            774 678899887753

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.17  E-value=1.4e-10  Score=97.45  Aligned_cols=79  Identities=20%  Similarity=0.315  Sum_probs=67.5

Q ss_pred             eEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257         349 ELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD  427 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR  427 (530)
                      .+.+.+....+|||.+.....|++|..|.++|+|+++| |+.||+|++|||+.+.++.+.++..+++.. +..|.|+|.|
T Consensus        11 ~v~l~~~~~~glG~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R   89 (96)
T 2qkv_A           11 NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA-NGKVSMEVTR   89 (96)
T ss_dssp             EEEEECBTTBCCCEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEEC
T ss_pred             EEEEEeCCCCCccEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCcEEEEEEe
Confidence            55566656667999988767899999999999999999 999999999999999998887777777664 5679999887


Q ss_pred             C
Q psy9257         428 R  428 (530)
Q Consensus       428 ~  428 (530)
                      .
T Consensus        90 ~   90 (96)
T 2qkv_A           90 P   90 (96)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.16  E-value=2.4e-10  Score=97.85  Aligned_cols=83  Identities=17%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             cCCCeeEEEEEecC--------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         355 DASGLIGLRVCAIN--------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       355 ~s~G~LG~~V~~~~--------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      .....|||++.++.        .|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++.. +..|.|+|
T Consensus        10 ~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v   88 (106)
T 4amh_A           10 RGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT-SDFVYLKV   88 (106)
T ss_dssp             --CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSC-CSEEEEEE
T ss_pred             CCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEE
Confidence            45667999998642        389999999999999999 999999999999999999988888888764 67899999


Q ss_pred             ecCCc---eeeEEecc
Q psy9257         426 RDRPL---ERTVTLHR  438 (530)
Q Consensus       426 rR~~~---e~tVtL~k  438 (530)
                      .|++.   .++++|.+
T Consensus        89 ~R~~~~~~~~~v~l~~  104 (106)
T 4amh_A           89 AKPGSGEKIMEIKLIK  104 (106)
T ss_dssp             ECCSSSCSEEEEEEEC
T ss_pred             EeCCCCCeEEEEEEec
Confidence            98653   34455544

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.16  E-value=1.8e-10  Score=101.01  Aligned_cols=80  Identities=25%  Similarity=0.442  Sum_probs=70.0

Q ss_pred             cceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      .+.+.+.+...++|||.+.++.   .+++|..|.+||+|+++| |+.||+|++|||+.+.++++.++..+++... ..|.
T Consensus        20 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~~v~   98 (125)
T 3hpk_A           20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVT   98 (125)
T ss_dssp             EEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEE
T ss_pred             CeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEE
Confidence            3467778888888999998743   579999999999999999 9999999999999999999988999998854 5699


Q ss_pred             EEEec
Q psy9257         423 VVIRD  427 (530)
Q Consensus       423 LtVrR  427 (530)
                      |+|+|
T Consensus        99 l~v~r  103 (125)
T 3hpk_A           99 IHYNK  103 (125)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99887

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.16  E-value=1.3e-10  Score=95.42  Aligned_cols=80  Identities=21%  Similarity=0.316  Sum_probs=64.8

Q ss_pred             cceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtL  423 (530)
                      ++.|.+.|.. .+|||++....  .|++|..| ++|+|+ +||+.||+|++|||+.+.+++.+++..+++. ..++.+.|
T Consensus         4 ~~~v~l~k~~-~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   80 (88)
T 3bpu_A            4 LITVHIVKGP-MGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTL   80 (88)
T ss_dssp             EEEEEEECBT-TBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEE
T ss_pred             EEEEEEEcCC-CceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEE
Confidence            4567777765 55999998653  68888887 999999 9999999999999999999987778888874 46789999


Q ss_pred             EEecCC
Q psy9257         424 VIRDRP  429 (530)
Q Consensus       424 tVrR~~  429 (530)
                      +|.|++
T Consensus        81 ~v~R~g   86 (88)
T 3bpu_A           81 LVQRQT   86 (88)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            998864

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.16  E-value=1.7e-10  Score=100.50  Aligned_cols=82  Identities=24%  Similarity=0.276  Sum_probs=69.8

Q ss_pred             cccceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      ...|.|.+.|+ .++|||.+. ...+++|..|.++|+|+++||+.||+|++|||+.+.+|+.+++..+++...+..|.|+
T Consensus        22 ~~~r~v~l~k~-~~~~G~~l~-~~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~   99 (109)
T 2vsv_A           22 SMPRSIRFTAE-EGDLGFTLR-GNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK   99 (109)
T ss_dssp             HSCEEEEECCG-GGCCCEEEE-SSSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred             CCCEEEEEEeC-CCceeEEEe-CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence            45567888885 456899986 4578999999999999999999999999999999998887778888887666669999


Q ss_pred             EecC
Q psy9257         425 IRDR  428 (530)
Q Consensus       425 VrR~  428 (530)
                      |.|.
T Consensus       100 V~~~  103 (109)
T 2vsv_A          100 VVSL  103 (109)
T ss_dssp             EESC
T ss_pred             EEEC
Confidence            8875

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.16  E-value=2.1e-10  Score=99.36  Aligned_cols=84  Identities=30%  Similarity=0.547  Sum_probs=71.0

Q ss_pred             ccccceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      ....+.|.+.+... +|||.+....  .|++|..|.++|+|+++| |+.||+|++|||+.+.++.+.++..+++. .+..
T Consensus        12 ~~~~~~v~l~k~~~-glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~   89 (119)
T 1tp5_A           12 PREPRRIVIHRGST-GLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQT   89 (119)
T ss_dssp             CCSCEEEEEECTTS-CCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSE
T ss_pred             CCccEEEEEEECCC-CccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence            34567788888654 4999999765  799999999999999999 99999999999999999988767777755 5688


Q ss_pred             EEEEEecCC
Q psy9257         421 IRVVIRDRP  429 (530)
Q Consensus       421 VtLtVrR~~  429 (530)
                      +.|+|.|++
T Consensus        90 v~l~v~r~~   98 (119)
T 1tp5_A           90 VTIIAQYKP   98 (119)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEEECC
Confidence            999998864

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.15  E-value=6.5e-11  Score=100.29  Aligned_cols=81  Identities=19%  Similarity=0.285  Sum_probs=68.9

Q ss_pred             CCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceee
Q psy9257         357 SGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT  433 (530)
Q Consensus       357 ~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~t  433 (530)
                      ...|||++..+.   .+++|..|.++|+|+++||+.||+|++|||+.+.++++.++..+++.. ++.+.|+|.|+++.++
T Consensus        14 ~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~~~~   92 (103)
T 1wf7_A           14 PAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRASAAAK   92 (103)
T ss_dssp             SSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCSCCCC
T ss_pred             CCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcCC
Confidence            466999998643   468999999999999999999999999999999999877777777765 7889999999887777


Q ss_pred             EEecc
Q psy9257         434 VTLHR  438 (530)
Q Consensus       434 VtL~k  438 (530)
                      +++..
T Consensus        93 ~~v~p   97 (103)
T 1wf7_A           93 SEPVS   97 (103)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            66644

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.15  E-value=2.7e-10  Score=99.87  Aligned_cols=74  Identities=16%  Similarity=0.351  Sum_probs=64.6

Q ss_pred             CCCeeEEEEEecC------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEec
Q psy9257         356 ASGLIGLRVCAIN------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRD  427 (530)
Q Consensus       356 s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR  427 (530)
                      ...+|||.+....      .|++|..|.++|+|+++| |+.||+|++|||+.+.+++.+++..+++.. .+..|.|+|.|
T Consensus        39 ~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R  118 (121)
T 2kom_A           39 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR  118 (121)
T ss_dssp             CTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEE
T ss_pred             CCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEe
Confidence            3556899998754      689999999999999999 999999999999999998877888888875 47889999988


Q ss_pred             CC
Q psy9257         428 RP  429 (530)
Q Consensus       428 ~~  429 (530)
                      ++
T Consensus       119 ~g  120 (121)
T 2kom_A          119 QE  120 (121)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.15  E-value=2.2e-10  Score=94.82  Aligned_cols=78  Identities=22%  Similarity=0.476  Sum_probs=66.1

Q ss_pred             EEEeccCCCeeEEEEEec-------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         350 LVLCKDASGLIGLRVCAI-------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~-------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      +.+.+. ..+|||.+...       ..|++|..|.++++|+++| |+.||+|++|||+.+.+++..++..+++. .+..+
T Consensus         8 v~l~~~-~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v   85 (97)
T 2iwn_A            8 VELTKN-VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTV   85 (97)
T ss_dssp             EEEECB-TTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEE
T ss_pred             EEEecC-CCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeE
Confidence            444443 55699999875       4689999999999999999 99999999999999999988778888776 67899


Q ss_pred             EEEEecCC
Q psy9257         422 RVVIRDRP  429 (530)
Q Consensus       422 tLtVrR~~  429 (530)
                      .|+|.|++
T Consensus        86 ~l~v~r~g   93 (97)
T 2iwn_A           86 LLTLMRRG   93 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeCC
Confidence            99998764

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.15  E-value=1.9e-10  Score=101.76  Aligned_cols=80  Identities=28%  Similarity=0.306  Sum_probs=68.4

Q ss_pred             eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRV  423 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtL  423 (530)
                      .|.+.+. ..+|||++.+..   .|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++... ++.|.|
T Consensus        21 ~v~l~~~-~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   99 (129)
T 2kpk_A           21 HTKLRKS-SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL   99 (129)
T ss_dssp             EEEEEEC-SSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEE
T ss_pred             EEEEEEC-CCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence            5566665 446999998733   469999999999999999 9999999999999999998888999998876 788999


Q ss_pred             EEecCC
Q psy9257         424 VIRDRP  429 (530)
Q Consensus       424 tVrR~~  429 (530)
                      +|.|+.
T Consensus       100 ~v~R~~  105 (129)
T 2kpk_A          100 ELCRGY  105 (129)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            998864

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=102.12  Aligned_cols=87  Identities=24%  Similarity=0.411  Sum_probs=72.6

Q ss_pred             cccccceEEEeccCCCeeEEEEEec----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      +...++.|.+.+. ..+|||++...    ..|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++.. 
T Consensus        22 ~~~~~~~v~l~k~-~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-   99 (124)
T 2daz_A           22 LPGELHIIELEKD-KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-   99 (124)
T ss_dssp             SSSEEEEEEEECC-SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-
T ss_pred             CCCceEEEEEEeC-CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            3444567777776 45699999875    2589999999999999999 999999999999999999988888888775 


Q ss_pred             CCeEEEEEecCCce
Q psy9257         418 VNNIRVVIRDRPLE  431 (530)
Q Consensus       418 G~~VtLtVrR~~~e  431 (530)
                      +..|.|+|.|++..
T Consensus       100 ~~~v~l~v~R~~~~  113 (124)
T 2daz_A          100 PSKVKLVFIRNEDA  113 (124)
T ss_dssp             CSEEEEEEEECTTH
T ss_pred             CCeEEEEEEeCCCc
Confidence            46899999887654

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.14  E-value=6.7e-11  Score=104.74  Aligned_cols=82  Identities=28%  Similarity=0.409  Sum_probs=69.5

Q ss_pred             eEEEeccCCCeeEEEEEecC-------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC----
Q psy9257         349 ELVLCKDASGLIGLRVCAIN-------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA----  416 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~-------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a----  416 (530)
                      .+.+.+....+|||++....       .|++|..|.++++|+++| |+.||+|++|||+.+.++++.++..+++..    
T Consensus        28 ~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~  107 (127)
T 1wg6_A           28 EIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME  107 (127)
T ss_dssp             EEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccc
Confidence            44455456777999998643       489999999999999999 999999999999999999988899999864    


Q ss_pred             --CCCeEEEEEecCCc
Q psy9257         417 --PVNNIRVVIRDRPL  430 (530)
Q Consensus       417 --~G~~VtLtVrR~~~  430 (530)
                        .+..|.|+|.|+..
T Consensus       108 g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          108 GNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHTCEEEEEEEECSC
T ss_pred             cCCCCEEEEEEEeCCC
Confidence              46899999988643

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=1.5e-10  Score=101.77  Aligned_cols=96  Identities=23%  Similarity=0.295  Sum_probs=79.7

Q ss_pred             CCCCeEEEEEecCCceeeEEeccCCCCccceeecc------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHH
Q psy9257         416 APVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNK------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKE  488 (530)
Q Consensus       416 a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~~~------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~ee  488 (530)
                      ..++.|.|+|.|+++++++++.......|||.+..      |. |..|.++++|+++||+.||+|++|||+++.++.+.+
T Consensus         6 ~~g~~v~l~v~R~g~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~   85 (128)
T 1uf1_A            6 SGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDE   85 (128)
T ss_dssp             STTTSCCSCCCCCSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHH
T ss_pred             CCCCEEEEEEEeCCcEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHH
Confidence            35678889999988888888887655679998865      43 889999999999999999999999999999998777


Q ss_pred             HHHHHHhCCCEEEEEEEeCcchhh
Q psy9257         489 LLEAMEKGGSVLTLTLIPTSMYQH  512 (530)
Q Consensus       489 Vv~iLkrsG~tVtLtVip~~~~e~  512 (530)
                      +...++. ++.+.|+|.|......
T Consensus        86 ~~~~~~~-~~~v~l~v~R~g~~~~  108 (128)
T 1uf1_A           86 AVRLLKS-SRHLILTVKDVGRLPH  108 (128)
T ss_dssp             HHHHHTT-CSEEEEEEECCSCCSS
T ss_pred             HHHHHhc-CCeEEEEEEECCcccc
Confidence            7777765 5799999998765433

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=4.1e-11  Score=102.86  Aligned_cols=84  Identities=25%  Similarity=0.441  Sum_probs=72.5

Q ss_pred             cccceEEEeccCCCeeEEEEEecC------------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHH
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAIN------------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHK  411 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~------------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~  411 (530)
                      ...+.|.+.+...+.|||.+....            .|++|..|.++++|+++| |+.||+|++|||+.+.+++..++..
T Consensus         8 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   87 (111)
T 1uju_A            8 PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQ   87 (111)
T ss_dssp             CSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHH
T ss_pred             CccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            446678888887788999999643            479999999999999999 9999999999999999988888888


Q ss_pred             HHHhCCCCeEEEEEecCC
Q psy9257         412 ILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       412 LLk~a~G~~VtLtVrR~~  429 (530)
                      +++. .+..|.|+|.|+.
T Consensus        88 ~l~~-~g~~v~l~v~r~~  104 (111)
T 1uju_A           88 LLRS-VGDTLTVLVCDGF  104 (111)
T ss_dssp             HHSS-CSSEEEECCCCCC
T ss_pred             HHHc-CCCeEEEEEEECC
Confidence            8866 5788999888753

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.13  E-value=3.8e-10  Score=92.87  Aligned_cols=78  Identities=19%  Similarity=0.385  Sum_probs=59.9

Q ss_pred             cCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceee
Q psy9257         355 DASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT  433 (530)
Q Consensus       355 ~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~t  433 (530)
                      .....|||.+.   .|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++... ..+.|+|.|+++.++
T Consensus        12 ~~~~~~g~~~~---~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~~~~   87 (92)
T 3cyy_A           12 AKNEEYGLRLA---SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDERATL   87 (92)
T ss_dssp             STTSCCCEEEE---EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEC------
T ss_pred             CCCCCCCEEEe---CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeCCceee
Confidence            34456888876   689999999999999999 9999999999999999777777888887754 589999999877766


Q ss_pred             EEe
Q psy9257         434 VTL  436 (530)
Q Consensus       434 VtL  436 (530)
                      +.+
T Consensus        88 ~~v   90 (92)
T 3cyy_A           88 LNV   90 (92)
T ss_dssp             ---
T ss_pred             eeC
Confidence            554

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=8.3e-11  Score=99.78  Aligned_cols=85  Identities=20%  Similarity=0.345  Sum_probs=70.9

Q ss_pred             cccceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ...|.|.+.|. .++|||.+...  ..|++|..|.++|+|+++||+.||+|++|||+.+.++++.++..+++.. +..+.
T Consensus         7 ~~~r~v~l~k~-~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~   84 (106)
T 2eei_A            7 GQPRLCYLVKE-GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKS-GSRVM   84 (106)
T ss_dssp             SSSEEEEEECC-SSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHH-CSEEE
T ss_pred             CCCEEEEEEEC-CCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEE
Confidence            34567888885 56699999753  4689999999999999999999999999999999998888888887654 67899


Q ss_pred             EEEecCCce
Q psy9257         423 VVIRDRPLE  431 (530)
Q Consensus       423 LtVrR~~~e  431 (530)
                      |+|.|++..
T Consensus        85 l~v~r~~~~   93 (106)
T 2eei_A           85 FLLVDKETD   93 (106)
T ss_dssp             EEECCTTTS
T ss_pred             EEEEcCchh
Confidence            999886543

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.13  E-value=1.4e-10  Score=99.82  Aligned_cols=89  Identities=25%  Similarity=0.395  Sum_probs=72.8

Q ss_pred             ceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      +++.+.+....+|||++...   ..|++|..|.++++|+++||+.||+|++|||+.+.++.+.++..+++..  ..+.|+
T Consensus        17 ~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l~   94 (114)
T 1x5n_A           17 KKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTIS   94 (114)
T ss_dssp             EEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEE
T ss_pred             EEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEE
Confidence            46666565667799999864   3689999999999999999999999999999999999877777777664  578999


Q ss_pred             EecC-CceeeEEecc
Q psy9257         425 IRDR-PLERTVTLHR  438 (530)
Q Consensus       425 VrR~-~~e~tVtL~k  438 (530)
                      |.|+ ++.+.+.+..
T Consensus        95 v~r~~g~~~~~~~~~  109 (114)
T 1x5n_A           95 IVAAAGRELFMTDRS  109 (114)
T ss_dssp             ECSSTTTHHHHSSCC
T ss_pred             EEcCCCCceEEEecc
Confidence            9887 6665555443

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.12  E-value=1.9e-10  Score=101.62  Aligned_cols=76  Identities=25%  Similarity=0.339  Sum_probs=65.6

Q ss_pred             CCeeEEEEEe-cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCcee
Q psy9257         357 SGLIGLRVCA-INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLER  432 (530)
Q Consensus       357 ~G~LG~~V~~-~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~  432 (530)
                      ...|||.+.. ...|++|..|.++|+|+++||+.||+|++|||+.+.+++.+++..+++. ..++.+.|+|.|++++.
T Consensus        38 ~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  115 (124)
T 3tsv_A           38 GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY  115 (124)
T ss_dssp             SSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHHH
T ss_pred             CCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCchh
Confidence            4679999986 4579999999999999999999999999999999999987777776665 56789999999876543

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=1.3e-10  Score=99.09  Aligned_cols=82  Identities=23%  Similarity=0.380  Sum_probs=68.5

Q ss_pred             ceEEEeccCCCeeEEEEE-----e------cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         348 RELVLCKDASGLIGLRVC-----A------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~-----~------~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      ++|.+.+.. .+|||.+.     +      ...|++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+++.
T Consensus        11 ~~v~l~k~~-~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   89 (108)
T 1q7x_A           11 FEVELAKND-NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   89 (108)
T ss_dssp             EEEEEESSS-CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH
T ss_pred             EEEEEEECC-CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            456666653 56999998     3      24689999999999999999 99999999999999998777778888877


Q ss_pred             CCCCeEEEEEecCCce
Q psy9257         416 APVNNIRVVIRDRPLE  431 (530)
Q Consensus       416 a~G~~VtLtVrR~~~e  431 (530)
                      . +..|.|+|.|++..
T Consensus        90 ~-g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           90 T-GQVVHLLLEKGQSP  104 (108)
T ss_dssp             T-TSEEEEEEECCCCS
T ss_pred             C-CCeEEEEEEeCCcc
Confidence            4 78999999987654

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.12  E-value=2.3e-12  Score=130.58  Aligned_cols=130  Identities=21%  Similarity=0.286  Sum_probs=28.3

Q ss_pred             hhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEE--------Ee--ccCCCeeEEEEEe----
Q psy9257         301 ENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELV--------LC--KDASGLIGLRVCA----  366 (530)
Q Consensus       301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~--------L~--K~s~G~LG~~V~~----  366 (530)
                      +++++++|++++++++..|+..++......     .|++||++.+.++.+.        .+  +..+++||+.+..    
T Consensus       163 ~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~-----~g~~~aip~~~i~~~l~~~~~~~~~g~~~~~r~~lGi~~~~~~~~  237 (332)
T 3num_A          163 TDAIINYGNAGGPLVNLDGEVIGINTLKVT-----AGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSS  237 (332)
T ss_dssp             ESSCCCTTTTTSEEEETTSCEEEEEEEEEE-----TTEEEEEEHHHHHHHHHHHCC------------------------
T ss_pred             EECCcCCCCcHHHhhCCCCcEEEEEeeEec-----ccceEEECHHHHHHHHHHHhhhhccCcccccccccceEEEecCHH
Confidence            567777888777777666666555433222     4678888655544332        11  2346889988753    


Q ss_pred             --------------cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCcee
Q psy9257         367 --------------INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLER  432 (530)
Q Consensus       367 --------------~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~  432 (530)
                                    ...|++|..|.++|||+++||+.||+|++|||+.+.++.+  +..+++.  ++.|+|+|+|+++++
T Consensus       238 ~~~~~~~~~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~--~~~~l~~--~~~v~l~v~R~g~~~  313 (332)
T 3num_A          238 KAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND--VSDVIKR--ESTLNMVVRRGNEDI  313 (332)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhhhhhhccccCCCCCceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHH--HHHHHhC--CCeEEEEEEECCEEE
Confidence                          1368999999999999999999999999999999988765  5566654  678999999998888


Q ss_pred             eEEeccC
Q psy9257         433 TVTLHRD  439 (530)
Q Consensus       433 tVtL~kd  439 (530)
                      ++++...
T Consensus       314 ~~~v~p~  320 (332)
T 3num_A          314 MITVIPE  320 (332)
T ss_dssp             -------
T ss_pred             EEEEEEe
Confidence            7777543

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.12  E-value=1.5e-10  Score=99.64  Aligned_cols=79  Identities=20%  Similarity=0.319  Sum_probs=67.7

Q ss_pred             eEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257         349 ELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD  427 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR  427 (530)
                      +|.+.+....+|||.+.....|++|..|.+||+|+++| |+.||+|++|||+.+.+..+.++..+++.. +..|.|+|.|
T Consensus         5 ~v~L~k~~~~glG~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R   83 (106)
T 2la8_A            5 NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTR   83 (106)
T ss_dssp             EEEECCBSSSTTCCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSC-BSCEEEEEEE
T ss_pred             EEEEEeCCCCccCEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEe
Confidence            56666666667999988767899999999999999999 999999999999999998887777777664 5679999887


Q ss_pred             C
Q psy9257         428 R  428 (530)
Q Consensus       428 ~  428 (530)
                      .
T Consensus        84 ~   84 (106)
T 2la8_A           84 P   84 (106)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.12  E-value=3.7e-10  Score=98.37  Aligned_cols=81  Identities=25%  Similarity=0.428  Sum_probs=68.7

Q ss_pred             cceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      .+.|.+.++..++|||++....   .+++|..|.++|+|+++| |+.||+|++|||+.+.+.+.+++..+++... ..|.
T Consensus        25 ~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~  103 (114)
T 2gzv_A           25 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVT  103 (114)
T ss_dssp             CEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEE
T ss_pred             CEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEE
Confidence            4578888888888999998754   369999999999999999 9999999999999997777777888887654 5688


Q ss_pred             EEEecC
Q psy9257         423 VVIRDR  428 (530)
Q Consensus       423 LtVrR~  428 (530)
                      |+|++.
T Consensus       104 l~v~~~  109 (114)
T 2gzv_A          104 IHYNKL  109 (114)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            887653

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.12  E-value=4.9e-11  Score=96.96  Aligned_cols=79  Identities=29%  Similarity=0.466  Sum_probs=66.9

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .+.|.+.+.. .+|||.+.. ..|++|..|.++|+|+++||+.||+|++|||+.+.+++++++..+++.. +..+.|+|.
T Consensus         3 ~r~v~l~~~~-~g~G~~~~~-~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~   79 (83)
T 2kv8_A            3 VRSVEVARGR-AGYGFTLSG-QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVIA   79 (83)
T ss_dssp             EEEEEECCCS-SCCSCBCCC-SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEEE
T ss_pred             cEEEEEEeCC-CcccEEEEc-CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEE
Confidence            4677787776 458998864 5689999999999999999999999999999999999877788888654 567899988


Q ss_pred             cC
Q psy9257         427 DR  428 (530)
Q Consensus       427 R~  428 (530)
                      |+
T Consensus        80 R~   81 (83)
T 2kv8_A           80 EG   81 (83)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.12  E-value=1e-10  Score=100.73  Aligned_cols=84  Identities=21%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             ceEEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      +.+.+.+. ..+|||.+....    .|++|..|.++++|+++| |+.||+|++|||+.+.+++..++..+++... ..|.
T Consensus        19 ~~v~l~~~-~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~   96 (116)
T 2dm8_A           19 MIIEISKG-RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVR   96 (116)
T ss_dssp             EEEEEECC-SSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCC-SEEE
T ss_pred             EEEEEEEC-CCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEE
Confidence            35555554 456999998644    599999999999999999 9999999999999999998888888887654 8899


Q ss_pred             EEEecCCceee
Q psy9257         423 VVIRDRPLERT  433 (530)
Q Consensus       423 LtVrR~~~e~t  433 (530)
                      |+|.|++..+.
T Consensus        97 l~v~R~~~~~~  107 (116)
T 2dm8_A           97 LVVYRDEAHYR  107 (116)
T ss_dssp             EEEECCSSCCC
T ss_pred             EEEEeCCcccc
Confidence            99998765443

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.12  E-value=3e-10  Score=106.17  Aligned_cols=78  Identities=22%  Similarity=0.410  Sum_probs=67.9

Q ss_pred             eEEEeccCCCeeEEEEEe---------cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         349 ELVLCKDASGLIGLRVCA---------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~---------~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      .|.+.|+. .+|||++..         ...|++|..|.+|++|+++| |+.||+|++|||+.+.++++.++..+++. .+
T Consensus        83 ~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g  160 (170)
T 3egg_C           83 PVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TK  160 (170)
T ss_dssp             EEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CC
T ss_pred             EEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CC
Confidence            46666665 469999987         23689999999999999999 99999999999999999999999999988 56


Q ss_pred             CeEEEEEecC
Q psy9257         419 NNIRVVIRDR  428 (530)
Q Consensus       419 ~~VtLtVrR~  428 (530)
                      ..|.|+|+|+
T Consensus       161 ~~v~L~V~R~  170 (170)
T 3egg_C          161 GRVRFMIGRE  170 (170)
T ss_dssp             SEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            8999999873

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.12  E-value=2.3e-10  Score=107.54  Aligned_cols=84  Identities=25%  Similarity=0.447  Sum_probs=73.7

Q ss_pred             cccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      ..++.|.+.+...++|||.+.++   ..|++|..|.+||+|+++||+.||+|++|||..|.+++.+++..+++.  +..|
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v  160 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTV  160 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEE
T ss_pred             CceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeE
Confidence            45667888887677899999865   468999999999999999999999999999999999888888888866  7899


Q ss_pred             EEEEecCCc
Q psy9257         422 RVVIRDRPL  430 (530)
Q Consensus       422 tLtVrR~~~  430 (530)
                      .|+|+|.++
T Consensus       161 ~l~v~r~g~  169 (192)
T 3k1r_A          161 SIKVRHIGL  169 (192)
T ss_dssp             EEEEEECCE
T ss_pred             EEEEEECCc
Confidence            999999764

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.12  E-value=5.4e-10  Score=92.30  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             ceeeEEeccCCCCccceeeccC-----c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      +.++++|.+.....|||.+.++     . |..|.++|+|+++| |+.||+|++|||+++.++..+++..++++.++.+.|
T Consensus         4 ~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l   83 (92)
T 2qg1_A            4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTL   83 (92)
T ss_dssp             CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEE
T ss_pred             eEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            3566777777667799998643     3 89999999999999 999999999999999999888999999988999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.|..
T Consensus        84 ~v~R~~   89 (92)
T 2qg1_A           84 EVGRIS   89 (92)
T ss_dssp             EEECCC
T ss_pred             EEEccc
Confidence            998875

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=4.4e-10  Score=94.75  Aligned_cols=79  Identities=25%  Similarity=0.285  Sum_probs=67.5

Q ss_pred             eEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEEEec
Q psy9257         349 ELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIRD  427 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLtVrR  427 (530)
                      .+.+.+.. .+|||.+.....|++|..|.++  |+++||+.||+|++|||+.+.+++++++.++++..+ ++.|.|+|+|
T Consensus        13 ~v~l~~~~-~g~G~~i~~~~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   89 (96)
T 1ujv_A           13 TLTIVKGA-QGFGFTIADSPTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHR   89 (96)
T ss_dssp             EEEEECCS-SSSSEEEEEETTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred             EEEEEeCC-CceeEEEEcCCCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEE
Confidence            45566654 5699999877779999999983  789999999999999999999998888999998875 8899999998


Q ss_pred             CCc
Q psy9257         428 RPL  430 (530)
Q Consensus       428 ~~~  430 (530)
                      ++.
T Consensus        90 ~g~   92 (96)
T 1ujv_A           90 GSG   92 (96)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            754

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=2.6e-10  Score=98.44  Aligned_cols=84  Identities=19%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             cceEEEeccCCCeeEEEEEecC----------CcEEEEEeccCCHhhh-cCCCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN----------EGVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~----------~GV~Vs~V~pGSPAak-AGLq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      .+.|.+.+....+|||.+....          .+++|..|.++|+|++ +||+.||+|++|||+.+.++..+++..+++.
T Consensus        11 ~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~   90 (114)
T 1uew_A           11 TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD   90 (114)
T ss_dssp             CEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4577787766778999998531          1569999999999999 9999999999999999999888889999987


Q ss_pred             CCCCeEEEEEecCCce
Q psy9257         416 APVNNIRVVIRDRPLE  431 (530)
Q Consensus       416 a~G~~VtLtVrR~~~e  431 (530)
                       .+..|.|+|+|+++.
T Consensus        91 -~g~~v~l~v~r~~~~  105 (114)
T 1uew_A           91 -AGLSVTLRIIPQEEL  105 (114)
T ss_dssp             -TTTEEEEEECCCSCC
T ss_pred             -CCCeEEEEEEeCCcC
Confidence             688999999987644

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=1.6e-10  Score=98.25  Aligned_cols=79  Identities=27%  Similarity=0.463  Sum_probs=66.8

Q ss_pred             eEEEeccCCCeeEEEEEec---------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         349 ELVLCKDASGLIGLRVCAI---------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~---------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      .+.+.+... +|||++...         ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++.. +
T Consensus        10 ~v~l~~~~~-glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g   87 (105)
T 1wha_A           10 VACLARSER-GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-S   87 (105)
T ss_dssp             EEEECCCTT-CCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-C
T ss_pred             EEEEEeCCC-ccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            455555544 499999863         3689999999999999999 999999999999999998888888888665 7


Q ss_pred             CeEEEEEecCC
Q psy9257         419 NNIRVVIRDRP  429 (530)
Q Consensus       419 ~~VtLtVrR~~  429 (530)
                      ..|.|+|.|+.
T Consensus        88 ~~v~l~v~R~~   98 (105)
T 1wha_A           88 PTIALLLEREA   98 (105)
T ss_dssp             SCEEEEEEECC
T ss_pred             CeEEEEEEECC
Confidence            88999998864

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.11  E-value=2.5e-10  Score=98.08  Aligned_cols=81  Identities=28%  Similarity=0.400  Sum_probs=65.7

Q ss_pred             cCCCeeEEEEEec------------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         355 DASGLIGLRVCAI------------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       355 ~s~G~LG~~V~~~------------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      ..+++||+.+...                  ..|++|..|.++|+|+++||+.||+|++|||+.+.++.  ++..+++. 
T Consensus         3 v~r~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~--~~~~~l~~-   79 (113)
T 2pzd_A            3 HMRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAE--DVYEAVRT-   79 (113)
T ss_dssp             --CEECCEEEEECCHHHHHHHHHHCSSCCCCSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSHH--HHHHHHHH-
T ss_pred             ccccEeEEEEEeCCHHHHHHhccccccccCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCHH--HHHHHHhC-
Confidence            4567788877652                  36899999999999999999999999999999998754  46677765 


Q ss_pred             CCCeEEEEEecCCceeeEEeccC
Q psy9257         417 PVNNIRVVIRDRPLERTVTLHRD  439 (530)
Q Consensus       417 ~G~~VtLtVrR~~~e~tVtL~kd  439 (530)
                       ++.+.|+|.|+++.+++++...
T Consensus        80 -~~~v~l~v~R~g~~~~~~v~~~  101 (113)
T 2pzd_A           80 -QSQLAVQIRRGRETLTLYVTPE  101 (113)
T ss_dssp             -CSSEEEEEEETTEEEEEEECCE
T ss_pred             -CCeEEEEEEECCEEEEEEEEEe
Confidence             5789999999988887777543

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.11  E-value=5.5e-10  Score=93.42  Aligned_cols=78  Identities=27%  Similarity=0.477  Sum_probs=68.6

Q ss_pred             ceeeEEeccCCCCccceeecc-------------C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-------------G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-------------G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      +.++|+|.+...+.|||.+..             | .|..|.++++|+++||+.||+|++|||+++.+++.+++..+|++
T Consensus         4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~   83 (96)
T 2ego_A            4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKA   83 (96)
T ss_dssp             CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            557788888877789999874             1 38899999999999999999999999999999988999999998


Q ss_pred             CCCEEEEEEEeC
Q psy9257         496 GGSVLTLTLIPT  507 (530)
Q Consensus       496 sG~tVtLtVip~  507 (530)
                      .++.+.|+|.+.
T Consensus        84 ~~~~v~l~v~~~   95 (96)
T 2ego_A           84 SGNVLRLETLYG   95 (96)
T ss_dssp             TTTEEEEEEECC
T ss_pred             CCCeEEEEEEEC
Confidence            888999999764

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.10  E-value=2.5e-10  Score=100.36  Aligned_cols=82  Identities=17%  Similarity=0.352  Sum_probs=72.3

Q ss_pred             CceeeEEeccCCCCccceeeccC----------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG----------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G----------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ...++|.|.++..+.|||.+.+|          .|..|.++|+|+++| |+.||+|++|||+++.+++.+++..++++.+
T Consensus        23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~  102 (118)
T 3b76_A           23 MHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTS  102 (118)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCC
T ss_pred             CCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35677888888777899999765          388999999999999 9999999999999999999999999999999


Q ss_pred             CEEEEEEEeCcch
Q psy9257         498 SVLTLTLIPTSMY  510 (530)
Q Consensus       498 ~tVtLtVip~~~~  510 (530)
                      +.++|+|.|....
T Consensus       103 ~~v~L~v~R~~~~  115 (118)
T 3b76_A          103 SSIVLKALEVKEG  115 (118)
T ss_dssp             SEEEEEEEEEEEC
T ss_pred             CeEEEEEEECCCc
Confidence            9999999886543

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=1.3e-10  Score=102.07  Aligned_cols=87  Identities=24%  Similarity=0.402  Sum_probs=70.7

Q ss_pred             EEEec-cCCCeeEEEEEecC-----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         350 LVLCK-DASGLIGLRVCAIN-----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       350 V~L~K-~s~G~LG~~V~~~~-----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      +.+.+ ....+|||.+....     .|++|..|.++++|+++| |+.||+|++|||+.|.++  .++..+++...+..|.
T Consensus        23 ~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~  100 (124)
T 1wh1_A           23 VDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKNFS  100 (124)
T ss_dssp             BCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCSCC
T ss_pred             EEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCEEE
Confidence            33433 44567999998764     789999999999999999 999999999999999875  4578888776678999


Q ss_pred             EEEecCCceeeEEecc
Q psy9257         423 VVIRDRPLERTVTLHR  438 (530)
Q Consensus       423 LtVrR~~~e~tVtL~k  438 (530)
                      |+|.|+++.+++....
T Consensus       101 l~v~R~g~~~~~~~~~  116 (124)
T 1wh1_A          101 LLIARPELQLDEGWMD  116 (124)
T ss_dssp             EEEEECSSCCCCCCCC
T ss_pred             EEEEECCEEeecccCC
Confidence            9999988776655443

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.10  E-value=3.5e-10  Score=91.93  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=61.2

Q ss_pred             CCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         357 SGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       357 ~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      .++|||++...   ..|++|..|.++|+|+++||+.||+|++|||+.+.++++.++..+++.. +..+.|+|.|++
T Consensus        10 ~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~   84 (85)
T 1rgw_A           10 PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSK   84 (85)
T ss_dssp             SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred             CCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            35699999753   3589999999999999999999999999999999999887788777554 567999998864

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.10  E-value=5.4e-10  Score=98.72  Aligned_cols=84  Identities=21%  Similarity=0.214  Sum_probs=71.5

Q ss_pred             ccceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVV  424 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLt  424 (530)
                      ..++|.+.|+.. +|||++.....|.+|..|.+  +++.+||+.||+|++|||+.|.+++++++..+++..+ +..|.|+
T Consensus        12 ~~~~V~L~Kg~~-G~GFsI~~~~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~   88 (113)
T 3soe_A           12 LLVTIPLIKGPK-GFGFAIADSPTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL   88 (113)
T ss_dssp             EEEEEEEECBTT-BSSEEEEEETTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEEEEECCC-cccEEEeCCCCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence            345788888755 59999987778889999987  5888999999999999999999999999999999764 7899999


Q ss_pred             EecCCcee
Q psy9257         425 IRDRPLER  432 (530)
Q Consensus       425 VrR~~~e~  432 (530)
                      |.|++...
T Consensus        89 V~R~g~~~   96 (113)
T 3soe_A           89 ILRGGPPS   96 (113)
T ss_dssp             EEESSCC-
T ss_pred             EEECCccC
Confidence            99976543

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=2.1e-10  Score=96.64  Aligned_cols=82  Identities=29%  Similarity=0.406  Sum_probs=64.9

Q ss_pred             cceEEEec-cCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCK-DASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K-~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      .+.+.+.+ ....+|||.+...   ..|++|..|.++++|+++||+.||+|++|||+.+.++.+..+..++  ..+..|.
T Consensus         9 ~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~--~~~~~v~   86 (101)
T 1uez_A            9 VRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKAL--KGSKKLV   86 (101)
T ss_dssp             CEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHS--SSSSSCC
T ss_pred             cEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhh--cCCCeEE
Confidence            34555554 3466799999875   3689999999999999999999999999999999999885444444  3356788


Q ss_pred             EEEecCCc
Q psy9257         423 VVIRDRPL  430 (530)
Q Consensus       423 LtVrR~~~  430 (530)
                      |+|.|+++
T Consensus        87 l~v~R~g~   94 (101)
T 1uez_A           87 LSVYSAGR   94 (101)
T ss_dssp             EEECCCCC
T ss_pred             EEEEECCc
Confidence            99888653

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=2.6e-10  Score=97.59  Aligned_cols=82  Identities=21%  Similarity=0.319  Sum_probs=67.8

Q ss_pred             cceEEEeccCCCeeEEEEEecCC----cEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC----C
Q psy9257         347 IRELVLCKDASGLIGLRVCAINE----GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA----P  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~----GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a----~  417 (530)
                      .+.|.+.+. ..+|||++.+...    +++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+++..    .
T Consensus         7 ~~~v~l~k~-~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~   85 (103)
T 1ufx_A            7 GTLVRVKKS-AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             SEEEEEECC-SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             eEEEEEEcC-CCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCC
Confidence            345666554 4569999987542    25999999999999999 999999999999999999998899999875    5


Q ss_pred             CCeEEEEEecCC
Q psy9257         418 VNNIRVVIRDRP  429 (530)
Q Consensus       418 G~~VtLtVrR~~  429 (530)
                      ++.+.|+|.|..
T Consensus        86 ~~~i~l~v~r~~   97 (103)
T 1ufx_A           86 RDYIDFLVTEFN   97 (103)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCeEEEEEEEcc
Confidence            678888888753

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.4e-10  Score=95.26  Aligned_cols=72  Identities=24%  Similarity=0.314  Sum_probs=62.5

Q ss_pred             CeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCc
Q psy9257         358 GLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL  430 (530)
Q Consensus       358 G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~  430 (530)
                      .+|||++..+   ..+++|..|.++++|+++||+.||+|++|||+.+.++++.++..+++. .++.+.|+|.|+++
T Consensus        18 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~   92 (94)
T 2eeg_A           18 SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGPS   92 (94)
T ss_dssp             SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred             CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence            5699999863   367999999999999999999999999999999999987777777766 57789999988654

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.09  E-value=2.9e-10  Score=96.44  Aligned_cols=78  Identities=23%  Similarity=0.448  Sum_probs=66.4

Q ss_pred             cceEEEeccCCCeeEEEEEec----------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI----------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~----------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      .+.+.+.+...+.|||.+...          ..+++|..|.++++|+++||+.||+|++|||+.+.+++.+++.++++..
T Consensus        16 ~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~   95 (104)
T 2z17_A           16 RKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSS   95 (104)
T ss_dssp             CCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Confidence            456667777677899999962          3589999999999999999999999999999999988888899999887


Q ss_pred             CCCeEEEEE
Q psy9257         417 PVNNIRVVI  425 (530)
Q Consensus       417 ~G~~VtLtV  425 (530)
                      . ..|.|+|
T Consensus        96 ~-~~v~l~v  103 (104)
T 2z17_A           96 G-NLLTIET  103 (104)
T ss_dssp             T-TEEEEEC
T ss_pred             C-CcEEEEE
Confidence            4 4777765

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.09  E-value=5.1e-10  Score=95.25  Aligned_cols=84  Identities=25%  Similarity=0.370  Sum_probs=69.5

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      ..++++|.+...+.|||.+.+|       .|..|.++|+|+++ ||+.||+|++|||+++.+++.+++..++++.++.++
T Consensus         9 ~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~   88 (103)
T 2dc2_A            9 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   88 (103)
T ss_dssp             CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEE
T ss_pred             CcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            3456677777777799999754       38999999999995 999999999999999999999999999999889999


Q ss_pred             EEEEeCcchhhh
Q psy9257         502 LTLIPTSMYQHM  513 (530)
Q Consensus       502 LtVip~~~~e~m  513 (530)
                      |+|.+....+++
T Consensus        89 l~v~~~~~~~~~  100 (103)
T 2dc2_A           89 FEVVYVALEHHH  100 (103)
T ss_dssp             EEEEECC-----
T ss_pred             EEEEecCCcchh
Confidence            999998766654

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=5.3e-10  Score=98.35  Aligned_cols=88  Identities=24%  Similarity=0.357  Sum_probs=70.6

Q ss_pred             EEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         350 LVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      +.+.......|||.+...   ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+.++...++.  +..+.|+|.
T Consensus        24 v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~  101 (128)
T 1uf1_A           24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLILTVK  101 (128)
T ss_dssp             EEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEEEEEE
T ss_pred             EEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEE
Confidence            444434446799999863   258999999999999999999999999999999999988667776654  468999999


Q ss_pred             cCCceeeEEeccC
Q psy9257         427 DRPLERTVTLHRD  439 (530)
Q Consensus       427 R~~~e~tVtL~kd  439 (530)
                      |+++..++++...
T Consensus       102 R~g~~~~~~v~~~  114 (128)
T 1uf1_A          102 DVGRLPHARTTVD  114 (128)
T ss_dssp             CCSCCSSCSCCCC
T ss_pred             ECCcccccccccc
Confidence            9887776665543

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.08  E-value=5e-10  Score=93.17  Aligned_cols=76  Identities=28%  Similarity=0.400  Sum_probs=63.1

Q ss_pred             EEEeccCCCeeEEEEEec-----------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         350 LVLCKDASGLIGLRVCAI-----------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~-----------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      |.+.++  .+|||.+.+.           ..|++|..|.++|+|++ ||+.||+|++|||+.+.++++.++..+++. .+
T Consensus         7 v~l~~~--~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~   82 (95)
T 1mfg_A            7 VRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQ   82 (95)
T ss_dssp             EEEECS--SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHH-CC
T ss_pred             EEECCC--CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhc-CC
Confidence            444443  3699999863           35899999999999999 999999999999999999888778888765 47


Q ss_pred             CeEEEEEecCC
Q psy9257         419 NNIRVVIRDRP  429 (530)
Q Consensus       419 ~~VtLtVrR~~  429 (530)
                      ..+.|+|.|+.
T Consensus        83 ~~v~l~v~R~~   93 (95)
T 1mfg_A           83 NTVELIIVREV   93 (95)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            88999998753

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=8.9e-11  Score=100.33  Aligned_cols=86  Identities=33%  Similarity=0.526  Sum_probs=72.3

Q ss_pred             cccccceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      .....+.|.+.+.. .+|||.+....  .|++|..|.++++|+++| |+.||+|++|||+.+.++.+.++..+++. .+.
T Consensus        12 ~~~~~~~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~-~~~   89 (113)
T 1um7_A           12 DAREPRKIILHKGS-TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-AGQ   89 (113)
T ss_dssp             CCCSEEEEEEECCS-SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS-CCS
T ss_pred             CCCceEEEEEEECC-CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCC
Confidence            34566778887765 55999998654  789999999999999999 99999999999999999987777877765 578


Q ss_pred             eEEEEEecCCc
Q psy9257         420 NIRVVIRDRPL  430 (530)
Q Consensus       420 ~VtLtVrR~~~  430 (530)
                      .+.|+|.|++.
T Consensus        90 ~v~l~v~r~~~  100 (113)
T 1um7_A           90 SVTIVAQYRPE  100 (113)
T ss_dssp             EEEEEEECCHH
T ss_pred             cEEEEEEECcc
Confidence            89999988654

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.08  E-value=7.9e-10  Score=91.10  Aligned_cols=78  Identities=27%  Similarity=0.449  Sum_probs=68.8

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.++++|.+.....|||.+.++       .|..|.++|+|+++ ||+.||+|++|||+++.+++..++...+++.++.++
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~   83 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV   83 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            5677888887777899999754       28899999999999 899999999999999999999999999998899999


Q ss_pred             EEEEeC
Q psy9257         502 LTLIPT  507 (530)
Q Consensus       502 LtVip~  507 (530)
                      |+|.+.
T Consensus        84 l~v~r~   89 (90)
T 1qav_A           84 LEVKYM   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            998763

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.08  E-value=6.6e-10  Score=91.58  Aligned_cols=79  Identities=32%  Similarity=0.505  Sum_probs=68.3

Q ss_pred             CceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      .+.++|+|.++.. .|||.+..     |. |..|.++++|+++||+.||+|++|||+++.+++++++..+++..++.+.|
T Consensus         3 ~~~r~v~l~k~~~-g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   81 (90)
T 2he4_A            3 LRPRLCHLRKGPQ-GYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARL   81 (90)
T ss_dssp             TCCEEEEEECBTT-BCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEE
T ss_pred             CCcEEEEEEECCC-CccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence            3556777877765 49999863     33 88999999999999999999999999999999988999999988999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.|..
T Consensus        82 ~v~r~~   87 (90)
T 2he4_A           82 LVVGPS   87 (90)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            998865

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.07  E-value=7.6e-10  Score=90.48  Aligned_cols=77  Identities=26%  Similarity=0.382  Sum_probs=67.4

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHH-cCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAAR-NGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAar-AGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.++++|.++....|||.+.+|       .|..|.++|+|++ +||+.||+|++|||+++.+++.+++..++++.++.++
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   81 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   81 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4567788887777899999754       3889999999999 6999999999999999999999999999999899999


Q ss_pred             EEEEe
Q psy9257         502 LTLIP  506 (530)
Q Consensus       502 LtVip  506 (530)
                      |+|..
T Consensus        82 l~v~~   86 (87)
T 4e34_A           82 FEVVY   86 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88853

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.07  E-value=3e-10  Score=93.99  Aligned_cols=82  Identities=26%  Similarity=0.399  Sum_probs=65.7

Q ss_pred             ceeeEEeccCCCCccceeecc-----C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      +.++|+|.++.. .|||.+..     | .|..|.++|+|+++||+.||+|++|||+++.+++.+++..+++..++.++|+
T Consensus         3 ~pr~v~l~k~~~-~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2vsp_A            3 KPKLCRLAKGEN-GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL   81 (91)
T ss_dssp             CEEEEEEECBTT-BTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEE
T ss_pred             CcEEEEEEeCCC-cccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            457788888766 48999853     2 2889999999999999999999999999999888899999998779999999


Q ss_pred             EEeCcchhh
Q psy9257         504 LIPTSMYQH  512 (530)
Q Consensus       504 Vip~~~~e~  512 (530)
                      |.+....++
T Consensus        82 v~r~~~~~~   90 (91)
T 2vsp_A           82 VCGKKAQDT   90 (91)
T ss_dssp             EEC------
T ss_pred             EEeCCcccc
Confidence            998765543

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.07  E-value=5.6e-10  Score=93.05  Aligned_cols=82  Identities=23%  Similarity=0.434  Sum_probs=69.7

Q ss_pred             ceeeEEeccCCCCccceeecc--------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK--------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~--------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      +.++|+|.++.. .|||.+..        |. |..|.++++|+++||+.||+|++|||+++.+++.+++..+++..++.+
T Consensus         3 ~~r~v~l~k~~~-~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   81 (96)
T 2v90_A            3 KPRCLHLEKGPQ-GFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV   81 (96)
T ss_dssp             CCEEEEEECBTT-BSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CCEEEEEEeCCC-cccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            346777777765 59999864        23 889999999999999999999999999999988899999998889999


Q ss_pred             EEEEEeCcchhh
Q psy9257         501 TLTLIPTSMYQH  512 (530)
Q Consensus       501 tLtVip~~~~e~  512 (530)
                      .|+|.|......
T Consensus        82 ~l~v~r~~~~~~   93 (96)
T 2v90_A           82 SLTVVDPEADRE   93 (96)
T ss_dssp             EEEEECCCTTSC
T ss_pred             EEEEECCCCccc
Confidence            999998765443

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.07  E-value=4.6e-11  Score=101.39  Aligned_cols=78  Identities=21%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             CCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCcee
Q psy9257         356 ASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLER  432 (530)
Q Consensus       356 s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~  432 (530)
                      ...+|||++....   .+++|..|.++|+|+++||+.||+|++|||+.+.+++.+++..+++.. ++.+.|+|.|+++.+
T Consensus        13 ~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~   91 (103)
T 1v5l_A           13 GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETRL   91 (103)
T ss_dssp             SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTTT
T ss_pred             CCCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeEc
Confidence            3567999988653   479999999999999999999999999999999998777888888776 889999999977654


Q ss_pred             eE
Q psy9257         433 TV  434 (530)
Q Consensus       433 tV  434 (530)
                      .+
T Consensus        92 ~~   93 (103)
T 1v5l_A           92 WS   93 (103)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=1.1e-10  Score=98.21  Aligned_cols=80  Identities=23%  Similarity=0.365  Sum_probs=65.7

Q ss_pred             EEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         350 LVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      +.+.+.. .+|||++....   .|++|..|.++++|+++| |+.||+|++|||+.+.++++.++..+++. .+..|.|+|
T Consensus        15 v~l~~~~-~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v   92 (103)
T 1wfv_A           15 VDMEKGA-KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS-GGRRVRLLL   92 (103)
T ss_dssp             CCEECCT-TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH-HCSEECEEE
T ss_pred             EEEecCC-CcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence            3444443 44999998654   389999999999999999 99999999999999999988778888873 468899999


Q ss_pred             ecCCce
Q psy9257         426 RDRPLE  431 (530)
Q Consensus       426 rR~~~e  431 (530)
                      .|++..
T Consensus        93 ~R~~~~   98 (103)
T 1wfv_A           93 KRGTGS   98 (103)
T ss_dssp             ECTTCS
T ss_pred             EECCCC
Confidence            887543

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.06  E-value=1e-09  Score=90.39  Aligned_cols=80  Identities=26%  Similarity=0.451  Sum_probs=66.9

Q ss_pred             ceeeEEeccCCCCccceeeccC-----c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      +.++|+|.+...+ |||.+..+     . |..|.++|+|+++||+.||+|++|||+++.+++..++..+++..++.+.+.
T Consensus         3 ~~r~v~l~r~~~g-~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~   81 (91)
T 1g9o_A            3 LPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL   81 (91)
T ss_dssp             CCEEEEEECBTTB-CCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             ccEEEEEEeCCCc-ccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            4567778777654 99998643     2 899999999999999999999999999999999899999999877777777


Q ss_pred             EEeCcch
Q psy9257         504 LIPTSMY  510 (530)
Q Consensus       504 Vip~~~~  510 (530)
                      +.+....
T Consensus        82 ~~~r~~~   88 (91)
T 1g9o_A           82 VVDPETD   88 (91)
T ss_dssp             EECCCCS
T ss_pred             EEcCCcc
Confidence            7665433

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=1.1e-09  Score=90.66  Aligned_cols=77  Identities=25%  Similarity=0.318  Sum_probs=66.0

Q ss_pred             eeeEEeccCCCCccceeeccC---cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG---QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G---vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      .++|+|.++..+ |||.+...   .|..|.++++|+++||+.||+|++|||+++.+++..++..+++..++.+.|+|.|.
T Consensus         4 ~r~v~l~~~~~g-~G~~l~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   82 (91)
T 2f5y_A            4 YRQITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   82 (91)
T ss_dssp             EEEEEEECBTTB-TSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             eEEEEEEeCCCC-ccEEEecCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            456777776544 89988643   38899999999999999999999999999999988899999988888999999886


Q ss_pred             c
Q psy9257         508 S  508 (530)
Q Consensus       508 ~  508 (530)
                      .
T Consensus        83 ~   83 (91)
T 2f5y_A           83 V   83 (91)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.06  E-value=1.2e-09  Score=87.35  Aligned_cols=72  Identities=21%  Similarity=0.404  Sum_probs=60.3

Q ss_pred             eccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         353 CKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       353 ~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      .......|||.+.   .|++|..|.++|+|+++| |+.||+|++|||+.+.+++..++..+++... ..+.|+|.|+
T Consensus         8 ~~~~~~~~g~~~~---~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   80 (81)
T 2rcz_A            8 KSRKNEEYGLRLA---SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRD   80 (81)
T ss_dssp             CCSTTCCCCEEEE---EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC-
T ss_pred             ECCCCCCCCEEEe---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeC
Confidence            3344556888876   689999999999999999 9999999999999999777777888887654 5888988775

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.05  E-value=1.1e-09  Score=93.54  Aligned_cols=79  Identities=29%  Similarity=0.484  Sum_probs=67.7

Q ss_pred             ceeeEEeccCCCCccceeecc------------------C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHH
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK------------------G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELL  490 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~------------------G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv  490 (530)
                      +.++++|.++..+.|||.+..                  | .|..|.++++|+++||+.||+|++|||+.|.+++++++.
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~   86 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   86 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            345677776666779999863                  2 388999999999999999999999999999999989999


Q ss_pred             HHHHhCCCEEEEEEEeCc
Q psy9257         491 EAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       491 ~iLkrsG~tVtLtVip~~  508 (530)
                      .++++.++.+.|+|.+..
T Consensus        87 ~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           87 NMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             HHHHHTTTEEEEEEEEEE
T ss_pred             HHHHhCCCEEEEEEEECC
Confidence            999988999999998753

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.05  E-value=3e-10  Score=99.96  Aligned_cols=81  Identities=25%  Similarity=0.353  Sum_probs=65.8

Q ss_pred             cCCCeeEEEEEec------CCcEEEEEecc--CCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         355 DASGLIGLRVCAI------NEGVFVCLVER--GSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       355 ~s~G~LG~~V~~~------~~GV~Vs~V~p--GSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      ...+.+||.+...      ..|++|..|.+  +++|+++||+.||+|++|||+.+.++..+++..+++.. +..+.|+|+
T Consensus        24 ~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~  102 (118)
T 2yub_A           24 TTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIE  102 (118)
T ss_dssp             CSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEE
T ss_pred             ccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEE
Confidence            3344455555432      36899999999  99999999999999999999999999767788888877 889999999


Q ss_pred             cCCceeeEEe
Q psy9257         427 DRPLERTVTL  436 (530)
Q Consensus       427 R~~~e~tVtL  436 (530)
                      |+++..++++
T Consensus       103 R~g~~~~~~~  112 (118)
T 2yub_A          103 HDPVPQRLDQ  112 (118)
T ss_dssp             ECSSCCCCCS
T ss_pred             ECCEEEeeec
Confidence            9887666543

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.05  E-value=2.4e-10  Score=114.12  Aligned_cols=86  Identities=20%  Similarity=0.264  Sum_probs=75.0

Q ss_pred             ccccceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhh-cCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAak-AGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      ....+.|.+.|...++|||.+.++.   .|++|..|.+||+|++ +||+.||+|++|||+.|.++++.++..+++.. ++
T Consensus        75 ~~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~  153 (263)
T 1z87_A           75 LLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GK  153 (263)
T ss_dssp             SCSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CS
T ss_pred             CCccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CC
Confidence            3356788888877788999998753   6899999999999999 79999999999999999999999999999886 67


Q ss_pred             eEEEEEecCCc
Q psy9257         420 NIRVVIRDRPL  430 (530)
Q Consensus       420 ~VtLtVrR~~~  430 (530)
                      .|.|+|+|..+
T Consensus       154 ~V~L~V~R~~~  164 (263)
T 1z87_A          154 EVVLEVKYMKE  164 (263)
T ss_dssp             CCCEEEECCSS
T ss_pred             eEEEEEEeCcc
Confidence            89999998654

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.05  E-value=1.5e-09  Score=89.51  Aligned_cols=78  Identities=22%  Similarity=0.311  Sum_probs=65.5

Q ss_pred             ceeeEEeccCCC-CccceeeccC-----c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSS-GHFGFHFNKG-----Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~-g~LGfs~~~G-----v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      +.++++|.++.. ..|||.+..+     . |..|.++++|+++||+.||+|++|||+.+.++.+.++...+++.++.+.|
T Consensus         6 ~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l   85 (91)
T 1m5z_A            6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDL   85 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEE
T ss_pred             ceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            445667766544 4689998643     3 88999999999999999999999999999999888888888888999999


Q ss_pred             EEEeC
Q psy9257         503 TLIPT  507 (530)
Q Consensus       503 tVip~  507 (530)
                      +|.|.
T Consensus        86 ~v~R~   90 (91)
T 1m5z_A           86 VISRN   90 (91)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99764

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.05  E-value=6.9e-10  Score=97.43  Aligned_cols=81  Identities=16%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             CceeeEEeccCCCCccceeeccC---------c-EEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG---------Q-IVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G---------v-V~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ...++|+|.+...+.|||.+.+|         . |..|.++++|+++ ||+.||+|++|||+++.+++..++..+++..+
T Consensus        23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  102 (120)
T 2iwo_A           23 MGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS  102 (120)
T ss_dssp             --CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             CCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45677888887776799999753         2 8899999999999 89999999999999999999999999999999


Q ss_pred             CEEEEEEEeCcc
Q psy9257         498 SVLTLTLIPTSM  509 (530)
Q Consensus       498 ~tVtLtVip~~~  509 (530)
                      +.++|+|.|...
T Consensus       103 ~~v~l~v~r~g~  114 (120)
T 2iwo_A          103 GSIEMQVVAGGD  114 (120)
T ss_dssp             SEEEEEEECCTT
T ss_pred             CeEEEEEEECCc
Confidence            999999998753

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.04  E-value=1e-09  Score=93.91  Aligned_cols=79  Identities=22%  Similarity=0.380  Sum_probs=63.6

Q ss_pred             cceEEEeccC--CCeeEEEEEecC----CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         347 IRELVLCKDA--SGLIGLRVCAIN----EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       347 Vr~V~L~K~s--~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      .+.+++.|..  ..+|||++....    .|++|..|.++|+|+++||+.||+|++|||+.+.+++.+++..++++   ..
T Consensus         7 ~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~---~~   83 (94)
T 3kzd_A            7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PS   83 (94)
T ss_dssp             EEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS---SE
T ss_pred             eeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC---Ce
Confidence            4566676654  346999998732    58999999999999999999999999999999999988888888864   56


Q ss_pred             EEEEEecC
Q psy9257         421 IRVVIRDR  428 (530)
Q Consensus       421 VtLtVrR~  428 (530)
                      ++|+|+.-
T Consensus        84 l~ltV~~~   91 (94)
T 3kzd_A           84 LGLLVRTY   91 (94)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            88887753

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.5e-09  Score=91.05  Aligned_cols=70  Identities=27%  Similarity=0.518  Sum_probs=62.9

Q ss_pred             cCCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         438 RDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       438 kd~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      .+....|||.+.+|.|..|.++|+|+++||+.||+|++|||+++.+++.+++..++++.++.+.|+|.+.
T Consensus        20 ~~~~~~lG~~~~~G~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p~   89 (90)
T 1y7n_A           20 PDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   89 (90)
T ss_dssp             SSTTSCCCEEEETTEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCCccccCeEecCCEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            3445568998888889999999999999999999999999999998888999999998899999999875

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=9.8e-11  Score=103.11  Aligned_cols=61  Identities=30%  Similarity=0.511  Sum_probs=55.4

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCc
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL  430 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~  430 (530)
                      .|++|..|.++++|+++||+.||+|++|||+.|.+++.+++..+++.. +..|.|+|.|+++
T Consensus        61 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~  121 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKDS  121 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence            569999999999999999999999999999999988888899999875 7899999988654

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.04  E-value=3.9e-10  Score=95.30  Aligned_cols=76  Identities=28%  Similarity=0.413  Sum_probs=64.2

Q ss_pred             eEEEeccCCCeeEEEEEe-----------cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         349 ELVLCKDASGLIGLRVCA-----------INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~-----------~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      .|.+.++  ++|||++.+           ...|++|..|.++|+|++ ||+.||+|++|||+.+.++++.++..+++. .
T Consensus        14 ~v~l~~~--~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~   89 (103)
T 1n7t_A           14 RVRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT-F   89 (103)
T ss_dssp             EEEEECS--SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHH-C
T ss_pred             EEEEccC--CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhc-C
Confidence            3445554  479999987           346899999999999999 999999999999999999988888888875 4


Q ss_pred             CCeEEEEEecC
Q psy9257         418 VNNIRVVIRDR  428 (530)
Q Consensus       418 G~~VtLtVrR~  428 (530)
                      +..+.|+|.|+
T Consensus        90 g~~v~l~v~R~  100 (103)
T 1n7t_A           90 QNTVELIIVRE  100 (103)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEec
Confidence            68899999885

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.04  E-value=1.5e-09  Score=89.96  Aligned_cols=71  Identities=27%  Similarity=0.410  Sum_probs=61.3

Q ss_pred             cCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         355 DASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       355 ~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      .....+||.+..   |++|..|.++|+|+++| |+.||+|++|||+.+.+++.+++..+++... ..|.|++.+..
T Consensus        10 ~~~~~~G~~~~~---gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~-~~v~L~v~~~~   81 (88)
T 3e17_A           10 RANEEYGLRLGS---QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDL   81 (88)
T ss_dssp             TTBCCCCEEEEE---EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEECCC-
T ss_pred             CCCCCCCEEEeC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEeCCC
Confidence            334568998863   89999999999999999 9999999999999999999989999998764 58899887753

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.03  E-value=8.6e-10  Score=93.49  Aligned_cols=83  Identities=25%  Similarity=0.472  Sum_probs=70.3

Q ss_pred             eeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      +.++|.+.....+||.+..     |. |..|.++|+|+++||+.||+|++|||+++.++.+.++...+++.++.++|+|.
T Consensus         3 r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~   82 (106)
T 3ngh_A            3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL   82 (106)
T ss_dssp             EEEEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEE
T ss_pred             EEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEE
Confidence            4667777776778888763     33 88999999999999999999999999999999988999999988999999999


Q ss_pred             eCcchhhhh
Q psy9257         506 PTSMYQHMM  514 (530)
Q Consensus       506 p~~~~e~m~  514 (530)
                      |....+.+.
T Consensus        83 r~~~~~~~~   91 (106)
T 3ngh_A           83 DGDSYEKAV   91 (106)
T ss_dssp             CHHHHHHHH
T ss_pred             ECCeeeeee
Confidence            876554443

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.03  E-value=1.8e-09  Score=92.94  Aligned_cols=81  Identities=25%  Similarity=0.346  Sum_probs=69.3

Q ss_pred             cceEEEeccCCCeeEEEEEecC-CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC-CeEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN-EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV-NNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~-~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G-~~VtL  423 (530)
                      .++|.+.|.. ..|||++.... ..+||++|.+|++|++.| |+.||.|++|||+.+.++++.++.++|++.+. ..++|
T Consensus         6 ~k~V~l~K~~-~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L   84 (95)
T 3gge_A            6 EKEVNVYKSE-DSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTM   84 (95)
T ss_dssp             EEEEEEECCS-SCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEEEEEECC-CCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEE
Confidence            4578888865 56999998643 458999999999999999 99999999999999999999999999998754 66777


Q ss_pred             EEecC
Q psy9257         424 VIRDR  428 (530)
Q Consensus       424 tVrR~  428 (530)
                      .+.+.
T Consensus        85 ~lv~p   89 (95)
T 3gge_A           85 KLIEP   89 (95)
T ss_dssp             EEEEE
T ss_pred             EEECc
Confidence            77653

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.03  E-value=9.1e-10  Score=98.29  Aligned_cols=80  Identities=29%  Similarity=0.467  Sum_probs=70.1

Q ss_pred             CceeeEEeccCCCCccceeecc------------------C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHH
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK------------------G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKEL  489 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~------------------G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeV  489 (530)
                      .+.++++|.+...+.|||.+.+                  | .|..|.++++|+++||+.||+|++|||++|.+++.+++
T Consensus        26 ~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~  105 (132)
T 3l4f_D           26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV  105 (132)
T ss_dssp             CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHH
T ss_pred             CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            3567888888777779999863                  2 38899999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEEEEEeCc
Q psy9257         490 LEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       490 v~iLkrsG~tVtLtVip~~  508 (530)
                      ..++++.++.+.|+|.+..
T Consensus       106 ~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D          106 VNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             HHHHHHTTTEEEEEEECCC
T ss_pred             HHHHHcCCCEEEEEEEECC
Confidence            9999999999999998765

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.03  E-value=2.2e-09  Score=89.24  Aligned_cols=79  Identities=22%  Similarity=0.377  Sum_probs=66.8

Q ss_pred             CceeeEEeccCCCCccceeecc---------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK---------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~---------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ++.+++.|.++. ..|||.+.+         |. |..|.++++|+++| |+.||+|++|||+.+.+++.+++..+++..+
T Consensus         4 g~~~~v~l~k~~-~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   82 (96)
T 1d5g_A            4 GDIFEVELAKND-NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG   82 (96)
T ss_dssp             TCEEEEEEECSS-SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCEEEEEEEeCC-CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            445666666654 458998874         33 88999999999999 9999999999999999999899999999889


Q ss_pred             CEEEEEEEeCc
Q psy9257         498 SVLTLTLIPTS  508 (530)
Q Consensus       498 ~tVtLtVip~~  508 (530)
                      +.+.|+|.|..
T Consensus        83 ~~v~l~v~R~~   93 (96)
T 1d5g_A           83 QVVHLLLEKGQ   93 (96)
T ss_dssp             SEEEEEEECCS
T ss_pred             CeEEEEEEcCC
Confidence            99999998754

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=1.5e-09  Score=89.90  Aligned_cols=77  Identities=18%  Similarity=0.368  Sum_probs=67.2

Q ss_pred             eeEEeccCCCCccceeeccC-----cEEEEccCCHHHH-cCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-----QIVSLVKDSSAAR-NGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-----vV~sVv~gSpAar-AGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      +.|.|.|+....|||.+..+     .|..|.++++|++ +||+.||+|++|||+++.+++.+++..+|+...+.++|+|.
T Consensus         3 r~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~   82 (88)
T 1kwa_A            3 RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV   82 (88)
T ss_dssp             EEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             EEEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEE
Confidence            56788888777799999752     2899999999999 78999999999999999999999999999977669999998


Q ss_pred             eCc
Q psy9257         506 PTS  508 (530)
Q Consensus       506 p~~  508 (530)
                      |..
T Consensus        83 r~~   85 (88)
T 1kwa_A           83 PSY   85 (88)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            764

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.02  E-value=1.5e-09  Score=88.85  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=63.3

Q ss_pred             EEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEe
Q psy9257         434 VTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP  506 (530)
Q Consensus       434 VtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip  506 (530)
                      +++.......|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.+++.+++..+++..++.+.|+|.|
T Consensus         4 ~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   83 (87)
T 2pa1_A            4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR   83 (87)
T ss_dssp             EEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEE
T ss_pred             EEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEe
Confidence            344444456799998643       2889999999999999999999999999999988899999999877899999988


Q ss_pred             Cc
Q psy9257         507 TS  508 (530)
Q Consensus       507 ~~  508 (530)
                      ..
T Consensus        84 ~~   85 (87)
T 2pa1_A           84 IT   85 (87)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.02  E-value=1.6e-09  Score=91.95  Aligned_cols=80  Identities=15%  Similarity=0.328  Sum_probs=67.7

Q ss_pred             ceeeEEeccCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      +.++|+|.++. ..|||.+.+           |. |..|.++|+|+++| |+.||+|++|||+.+.+++..++...+++.
T Consensus         3 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (105)
T 2awx_A            3 KIMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT   81 (105)
T ss_dssp             CEEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC
T ss_pred             eEEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            34566777766 459999973           33 88999999999999 999999999999999999989999999988


Q ss_pred             CCEEEEEEEeCcch
Q psy9257         497 GSVLTLTLIPTSMY  510 (530)
Q Consensus       497 G~tVtLtVip~~~~  510 (530)
                      ++.+.|+|.|....
T Consensus        82 ~~~v~l~v~R~~~~   95 (105)
T 2awx_A           82 SDFVYLKVAKPTSM   95 (105)
T ss_dssp             CSEEEEEEECCCC-
T ss_pred             CCeEEEEEEcCCCC
Confidence            99999999987644

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.02  E-value=9.6e-10  Score=91.11  Aligned_cols=82  Identities=29%  Similarity=0.471  Sum_probs=66.2

Q ss_pred             ceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      +.+.++|.++.. .|||.+..     |. |..|.++++|+++||+.||+|++|||+++.+++++++..+|+..++.+.++
T Consensus         5 ~~r~v~l~~~~~-~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~   83 (95)
T 3r68_A            5 QPRVVVIKKGSN-GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL   83 (95)
T ss_dssp             CCEEEEEECBTT-BCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             CcEEEEEecCCC-cccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            345666766543 48999863     22 888999999999999999999999999999999899999999988999998


Q ss_pred             EEeCcchhh
Q psy9257         504 LIPTSMYQH  512 (530)
Q Consensus       504 Vip~~~~e~  512 (530)
                      +.+....+.
T Consensus        84 ~~r~~~~~~   92 (95)
T 3r68_A           84 VLDKELERP   92 (95)
T ss_dssp             EEECC----
T ss_pred             EECCccccc
Confidence            887765443

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.02  E-value=1.5e-09  Score=91.30  Aligned_cols=78  Identities=24%  Similarity=0.388  Sum_probs=67.4

Q ss_pred             ceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ..++++|.++.. .|||.+..     |. |..|.++|+|+++| |+.||+|++|||+++.+++..++...+++.++.++|
T Consensus        11 ~~~~v~l~k~~~-glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l   89 (104)
T 3i4w_A           11 EPRRIVIHRGST-GLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI   89 (104)
T ss_dssp             SCEEEEEECBTT-BTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEE
T ss_pred             ccEEEEEEeCCC-ccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            456677777654 49999874     33 88999999999999 999999999999999999998999999989999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.+..
T Consensus        90 ~v~r~~   95 (104)
T 3i4w_A           90 IAQYKP   95 (104)
T ss_dssp             EEEECH
T ss_pred             EEEECc
Confidence            998873

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.02  E-value=1.7e-09  Score=90.94  Aligned_cols=78  Identities=23%  Similarity=0.426  Sum_probs=67.4

Q ss_pred             ceeeEEeccCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      ..++|+|.++. ..|||.+.+           |. |..|.++++|+++| |+.||+|++|||+.+.+++..++..++++.
T Consensus         7 ~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (101)
T 2jik_A            7 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   85 (101)
T ss_dssp             EEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            45677787776 569999875           22 88999999999999 999999999999999999888999999888


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.+.|+|.|..
T Consensus        86 g~~v~l~v~R~~   97 (101)
T 2jik_A           86 GYAVSLRVQHRL   97 (101)
T ss_dssp             CSEEEEEEEEES
T ss_pred             CCeEEEEEEeCC
Confidence            899999997754

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.01  E-value=8.1e-10  Score=96.45  Aligned_cols=81  Identities=28%  Similarity=0.369  Sum_probs=65.9

Q ss_pred             ccceEEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHHHhC---C
Q psy9257         346 GIRELVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKILKAA---P  417 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LLk~a---~  417 (530)
                      .++.+.+.+.  ++|||.+.+..    ..++|..|.++|+|+++ ||+.||+|++|||+.+.+++++++..+++..   .
T Consensus        18 ~~~~~~~~~~--~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~   95 (118)
T 1v6b_A           18 DVRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQG   95 (118)
T ss_dssp             CEEEEEEESC--SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCC--CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcC
Confidence            3445555444  46999998642    34999999999999999 8999999999999999999988888888754   3


Q ss_pred             CCeEEEEEecC
Q psy9257         418 VNNIRVVIRDR  428 (530)
Q Consensus       418 G~~VtLtVrR~  428 (530)
                      +..|+|+|.|.
T Consensus        96 g~~v~l~v~r~  106 (118)
T 1v6b_A           96 GDWIDLVVAVC  106 (118)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEeC
Confidence            78899999883

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.01  E-value=2.1e-09  Score=89.68  Aligned_cols=78  Identities=26%  Similarity=0.405  Sum_probs=67.3

Q ss_pred             eeeEEeccCCCCccceeecc------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      .++++|.+.....|||.+.+            |. |..|.++++|+++| |+.||+|++|||+++.++++.++..++++.
T Consensus         6 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   85 (98)
T 1ihj_A            6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   85 (98)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            35677777666679999863            33 88999999999999 999999999999999999888999999889


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.++|+|.|..
T Consensus        86 g~~v~l~v~R~g   97 (98)
T 1ihj_A           86 DFKIELEIQTFD   97 (98)
T ss_dssp             CSEEEEEEEEC-
T ss_pred             CCeEEEEEEeCC
Confidence            999999998863

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=5.3e-10  Score=94.48  Aligned_cols=80  Identities=21%  Similarity=0.348  Sum_probs=63.9

Q ss_pred             eEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhc-CCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLV-GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakA-GLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .+.+......+|||++...   ..+++|..|.++|+|+++ ||+.||+|++|||+.+.++ +.++..+++.. +..|.|+
T Consensus        12 ~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~-~~~v~l~   89 (100)
T 2edp_A           12 YVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGS-FRILKLI   89 (100)
T ss_dssp             EEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTC-CSSCEEE
T ss_pred             EEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhC-CCeEEEE
Confidence            3444333345799999863   357999999999999999 8999999999999999997 55677777664 6889999


Q ss_pred             EecCCc
Q psy9257         425 IRDRPL  430 (530)
Q Consensus       425 VrR~~~  430 (530)
                      |+|+++
T Consensus        90 v~R~~~   95 (100)
T 2edp_A           90 VRRRNS   95 (100)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            988754

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.01  E-value=1.7e-09  Score=90.22  Aligned_cols=80  Identities=21%  Similarity=0.364  Sum_probs=67.7

Q ss_pred             CceeeEEeccCCCCccceeecc-------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK-------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSV  499 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~-------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~t  499 (530)
                      +++++|+|.++.. .|||.+..       |. |..|.++++|+++| |+.||+|++|||+++.+++..++...++..++.
T Consensus         3 g~~~~v~l~~~~~-~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   81 (98)
T 2opg_A            3 GCETTIEISKGRT-GLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR   81 (98)
T ss_dssp             CEEEEEEEECBTT-BTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEEEECCC-cccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3566777777654 48999863       33 88999999999999 999999999999999999888899999888899


Q ss_pred             EEEEEEeCcc
Q psy9257         500 LTLTLIPTSM  509 (530)
Q Consensus       500 VtLtVip~~~  509 (530)
                      +.|+|.|...
T Consensus        82 v~l~v~R~~~   91 (98)
T 2opg_A           82 VRLTLYRDEA   91 (98)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEcCCC
Confidence            9999988653

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.01  E-value=1.3e-09  Score=94.76  Aligned_cols=77  Identities=29%  Similarity=0.383  Sum_probs=63.8

Q ss_pred             EeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh--CCCCeEEEEEecC
Q psy9257         352 LCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA--APVNNIRVVIRDR  428 (530)
Q Consensus       352 L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~--a~G~~VtLtVrR~  428 (530)
                      +.+....++||.+...+.+.+|..|.+||||++|||+.||+|++|||+.+...+.+++..+++.  ..+..|.|.|..+
T Consensus        22 ~l~~~~~g~G~~l~~~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~~  100 (101)
T 3qik_A           22 LILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVATK  100 (101)
T ss_dssp             EECCCSSSSSEEEEEETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEeCCCcccEEEEccCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEecC
Confidence            3333456689999988889999999999999999999999999999999975566668888876  3678888887653

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.01  E-value=1.6e-09  Score=89.73  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=62.2

Q ss_pred             CCCccceeeccCc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         440 SSGHFGFHFNKGQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       440 ~~g~LGfs~~~Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      ....+||.+.+|. |..|.++|+|+++| |+.||+|++|||+.+.+++.+++..++++.++.++|++.+...+
T Consensus        11 ~~~~~G~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~~   83 (88)
T 3e17_A           11 ANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH   83 (88)
T ss_dssp             TBCCCCEEEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred             CCCCCCEEEeCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence            3456899987776 88999999999999 99999999999999999999999999999999999999887644

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.00  E-value=1.7e-09  Score=100.41  Aligned_cols=77  Identities=25%  Similarity=0.400  Sum_probs=64.8

Q ss_pred             CeeEEEEEec-----------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         358 GLIGLRVCAI-----------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       358 G~LG~~V~~~-----------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      ++|||++.++           ..|++|..|.++|+|++ ||+.||+|++|||+.+.++.+.++..+++.. +..|.|+|.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~   79 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIV   79 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence            3478888763           46899999999999999 9999999999999999999988888888776 458999998


Q ss_pred             c---CCceeeEEe
Q psy9257         427 D---RPLERTVTL  436 (530)
Q Consensus       427 R---~~~e~tVtL  436 (530)
                      |   ++++.++.+
T Consensus        80 r~~~~G~~~~~~v   92 (195)
T 2qbw_A           80 REVGNGAKQEIRV   92 (195)
T ss_dssp             EECSSSCEEEEEE
T ss_pred             EcCCCCCCceeEe
Confidence            8   666655544

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.00  E-value=2.5e-09  Score=88.40  Aligned_cols=76  Identities=18%  Similarity=0.402  Sum_probs=65.0

Q ss_pred             eeeEEeccCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      .++|+|.++.. .|||.+.+           |. |..|.++++|+++| |+.||+|++|||+.+.+++..++...++..+
T Consensus         4 ~~~v~l~k~~~-g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (94)
T 2fe5_A            4 IMEVNLLKGPK-GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS   82 (94)
T ss_dssp             EEEEEEECCTT-CSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred             EEEEEEEECCC-CCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45677777754 49999874           23 88999999999999 9999999999999999998889999998888


Q ss_pred             CEEEEEEEeC
Q psy9257         498 SVLTLTLIPT  507 (530)
Q Consensus       498 ~tVtLtVip~  507 (530)
                      +.+.|+|.|.
T Consensus        83 ~~v~l~v~R~   92 (94)
T 2fe5_A           83 DMVYLKVAKP   92 (94)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEcC
Confidence            8999999775

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=4.4e-10  Score=98.56  Aligned_cols=82  Identities=22%  Similarity=0.379  Sum_probs=67.1

Q ss_pred             ccceEEEeccCCC--eeEEEEEecC----CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         346 GIRELVLCKDASG--LIGLRVCAIN----EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       346 ~Vr~V~L~K~s~G--~LG~~V~~~~----~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      ..+.+.+.|....  .|||++...+    .|++|..|.++++|+++||+.||+|++|||+.+.++...++..+++.   .
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~   91 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---P   91 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---S
T ss_pred             ceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---C
Confidence            4567777776553  5899987632    57999999999999999999999999999999999887677777753   4


Q ss_pred             eEEEEEecCCc
Q psy9257         420 NIRVVIRDRPL  430 (530)
Q Consensus       420 ~VtLtVrR~~~  430 (530)
                      .+.|+|+|.+.
T Consensus        92 ~v~l~v~R~p~  102 (114)
T 2d8i_A           92 SLGLLVRTYPE  102 (114)
T ss_dssp             EEEEEEEECCC
T ss_pred             cEEEEEEECCC
Confidence            88999988653

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.00  E-value=8.3e-10  Score=94.82  Aligned_cols=80  Identities=20%  Similarity=0.358  Sum_probs=64.9

Q ss_pred             cCCCeeEEEEEec------------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         355 DASGLIGLRVCAI------------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       355 ~s~G~LG~~V~~~------------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      ..+++||+.+...                  ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +...++  
T Consensus         3 v~~~~lGi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~--~~~~l~--   78 (112)
T 2p3w_A            3 HMKRFIGIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSE--LQEAVL--   78 (112)
T ss_dssp             CCEEECCEEEEECCHHHHHHHHHHCTTC--CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH--HHHHHH--
T ss_pred             cccceeeEEEecCCHHHHHHhcccCcCcccCCCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHh--
Confidence            4456778877652                  468999999999999999999999999999999988644  555564  


Q ss_pred             CCCeEEEEEecCCceeeEEecc
Q psy9257         417 PVNNIRVVIRDRPLERTVTLHR  438 (530)
Q Consensus       417 ~G~~VtLtVrR~~~e~tVtL~k  438 (530)
                      .++.+.|+|.|+++.+++++..
T Consensus        79 ~g~~v~l~v~R~g~~~~~~v~~  100 (112)
T 2p3w_A           79 TESPLLLEVRRGNDDLLFSIAP  100 (112)
T ss_dssp             HCSSEEEEEEETTEEEEEEECC
T ss_pred             CCCeEEEEEEECCEEEEEEEEE
Confidence            3678999999988887777653

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.00  E-value=1.7e-09  Score=90.09  Aligned_cols=77  Identities=26%  Similarity=0.447  Sum_probs=65.7

Q ss_pred             eeeEEeccCCCCccceeeccC----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS  498 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~  498 (530)
                      .++|+|.++. ..|||.+.++          . |..|.++++|+++| |+.||+|++|||+++.+++.+++..+++..++
T Consensus         4 ~~~v~l~k~~-~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   82 (97)
T 2jil_A            4 TVEVTLHKEG-NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ   82 (97)
T ss_dssp             EEEEEEECBT-TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCS
T ss_pred             EEEEEEEeCC-CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3456666643 4599998643          2 88999999999999 99999999999999999888999999998899


Q ss_pred             EEEEEEEeCc
Q psy9257         499 VLTLTLIPTS  508 (530)
Q Consensus       499 tVtLtVip~~  508 (530)
                      .+.|+|.|..
T Consensus        83 ~v~l~v~R~~   92 (97)
T 2jil_A           83 EAALLIEYDV   92 (97)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEeCC
Confidence            9999998865

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.00  E-value=3.1e-10  Score=101.60  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             eEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEe
Q psy9257         349 ELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIR  426 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVr  426 (530)
                      ++.+.+. ..+|||.+.....+++|..|.++++|+++| |+.||+|++|||+.|.+.+..++..+++.. .++.|.|+|.
T Consensus        30 ~~~l~k~-~~glG~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~  108 (126)
T 1wif_A           30 QTKLTVG-NLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY  108 (126)
T ss_dssp             EEEEECC-TTCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEE
T ss_pred             EEEEecC-CceEeEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEE
Confidence            4555555 455999988777889999999999999999 999999999999999877788899999863 5789999999


Q ss_pred             cC
Q psy9257         427 DR  428 (530)
Q Consensus       427 R~  428 (530)
                      |+
T Consensus       109 R~  110 (126)
T 1wif_A          109 RG  110 (126)
T ss_dssp             SS
T ss_pred             EC
Confidence            87

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.00  E-value=2.4e-09  Score=89.08  Aligned_cols=78  Identities=24%  Similarity=0.402  Sum_probs=66.7

Q ss_pred             eeeEEeccC-CCCccceeecc-----Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         431 ERTVTLHRD-SSGHFGFHFNK-----GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       431 e~tVtL~kd-~~g~LGfs~~~-----Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      .++|+|.+. ....|||.+.+     |. |..|.++|+|+++| |+.||+|++|||+++.+++..++...+++.++.+.|
T Consensus         4 ~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l   83 (95)
T 2vwr_A            4 ILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNL   83 (95)
T ss_dssp             EEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEE
T ss_pred             EEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            456677764 44569999853     33 88999999999999 999999999999999999888899999888999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.|..
T Consensus        84 ~v~R~~   89 (95)
T 2vwr_A           84 TIARPG   89 (95)
T ss_dssp             EEEEES
T ss_pred             EEEcCC
Confidence            998864

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=1.4e-09  Score=93.89  Aligned_cols=80  Identities=28%  Similarity=0.510  Sum_probs=69.4

Q ss_pred             ceeeEEeccCCCCccceeeccC--------------cEEEEccCCHHHH-cCCCCCCEEEEEcCeecCCCChHHHHHHHH
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG--------------QIVSLVKDSSAAR-NGLLVNHNILEVNGANVVGLKDKELLEAME  494 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G--------------vV~sVv~gSpAar-AGLr~GDrILeVNGq~V~gls~eeVv~iLk  494 (530)
                      +.++|.|.++....|||.+.++              .|..|.++++|++ +||+.||+|++|||+.+.++..+++..+|+
T Consensus        10 ~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~   89 (114)
T 1uew_A           10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             cceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4567777777667799998532              4899999999999 999999999999999999998899999999


Q ss_pred             hCCCEEEEEEEeCcc
Q psy9257         495 KGGSVLTLTLIPTSM  509 (530)
Q Consensus       495 rsG~tVtLtVip~~~  509 (530)
                      +.++.+.|+|.|...
T Consensus        90 ~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           90 DAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HTTTEEEEEECCCSC
T ss_pred             cCCCeEEEEEEeCCc
Confidence            899999999988753

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.99  E-value=4.6e-10  Score=94.90  Aligned_cols=77  Identities=19%  Similarity=0.384  Sum_probs=63.8

Q ss_pred             EEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         350 LVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      +.+.+. ..+|||.+.. ..+++|..|.++++|+++||+.||+|++|||+.+.+++..++..+++.. +..|.|+|+|+.
T Consensus        19 v~l~~~-~~g~G~~~~~-~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~   95 (100)
T 1whd_A           19 ITIRRG-KDGFGFTICC-DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRVS   95 (100)
T ss_dssp             EEEECC-SSSSSCBCCC-SSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             EEEECC-CCeeeEEEeC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            444444 4558988874 4789999999999999999999999999999999998888888888775 456899998863

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=2e-09  Score=91.68  Aligned_cols=80  Identities=21%  Similarity=0.367  Sum_probs=68.2

Q ss_pred             CceeeEEeccCCCCccceeec-----c---------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257         429 PLERTVTLHRDSSGHFGFHFN-----K---------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~-----~---------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      ++.++|+|.++. ..|||.+.     +         |. |..|.++|+|+++| |+.||+|++|||+.+.+++..++...
T Consensus         8 ~~~~~v~l~k~~-~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            8 GDIFEVELAKND-NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SSEEEEEEESSS-CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CcEEEEEEEECC-CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            456677777665 44899987     2         33 99999999999999 99999999999999998888899999


Q ss_pred             HHhCCCEEEEEEEeCcc
Q psy9257         493 MEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       493 LkrsG~tVtLtVip~~~  509 (530)
                      +++.++.+.|+|.|...
T Consensus        87 ~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           87 LRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHTTSEEEEEEECCCC
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99889999999988753

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=1.7e-09  Score=94.52  Aligned_cols=82  Identities=22%  Similarity=0.466  Sum_probs=69.9

Q ss_pred             ecCCceeeEEeccCCCCccceeeccC---------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHH
Q psy9257         426 RDRPLERTVTLHRDSSGHFGFHFNKG---------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAME  494 (530)
Q Consensus       426 rR~~~e~tVtL~kd~~g~LGfs~~~G---------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLk  494 (530)
                      ...++.++|+|.++.. .|||.+.+|         . |..|.++|+|+++| |+.||+|++|||++|.+++.+++..+++
T Consensus        21 ~~~~~~~~v~L~k~~~-glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   99 (117)
T 2fne_A           21 QSMPQCKSITLERGPD-GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK   99 (117)
T ss_dssp             --CCEEEEEEECCBTT-BTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             cCCCccEEEEEEeCCC-cccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3445677888888774 599999753         2 88999999999999 9999999999999999999899999999


Q ss_pred             hCCCEEEEEEEeCc
Q psy9257         495 KGGSVLTLTLIPTS  508 (530)
Q Consensus       495 rsG~tVtLtVip~~  508 (530)
                      +.++.++|+|.|..
T Consensus       100 ~~~~~v~l~v~R~g  113 (117)
T 2fne_A          100 RTKGTVTLMVLSSD  113 (117)
T ss_dssp             HCCSSEEEEEEECS
T ss_pred             cCCCeEEEEEEeCC
Confidence            88888999998865

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.99  E-value=6.2e-10  Score=90.43  Aligned_cols=77  Identities=23%  Similarity=0.368  Sum_probs=66.0

Q ss_pred             ceeeEEeccCCCCccceeeccC---cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEe
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG---QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP  506 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G---vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip  506 (530)
                      +.++|+|.++.. .|||.+..+   .|..|.++++|+++||+.||+|++|||+++.+++.+++..++++.++.++|+|.|
T Consensus         2 ~~r~v~l~~~~~-g~G~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   80 (83)
T 2kv8_A            2 RVRSVEVARGRA-GYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE   80 (83)
T ss_dssp             CEEEEEECCCSS-CCSCBCCCSSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEEC
T ss_pred             CcEEEEEEeCCC-cccEEEEcCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEc
Confidence            456788888774 489988643   3889999999999999999999999999999999889999998777889999987


Q ss_pred             C
Q psy9257         507 T  507 (530)
Q Consensus       507 ~  507 (530)
                      .
T Consensus        81 ~   81 (83)
T 2kv8_A           81 G   81 (83)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=2.8e-09  Score=91.04  Aligned_cols=82  Identities=29%  Similarity=0.450  Sum_probs=69.2

Q ss_pred             CceeeEEeccCCCCccceeecc---------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK---------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~---------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ++.++|+|.++.. .|||.+..         |. |..|.++++|+++| |+.||+|++|||+++.+++..++...+++.+
T Consensus         7 ~~~~~v~l~~~~~-glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   85 (110)
T 1um1_A            7 GYVFTVELERGPS-GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCEEEEEEECCTT-CCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CcEEEEEEEECCC-ccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3456677776654 49999864         33 88999999999999 9999999999999999999999999999889


Q ss_pred             CEEEEEEEeCcchh
Q psy9257         498 SVLTLTLIPTSMYQ  511 (530)
Q Consensus       498 ~tVtLtVip~~~~e  511 (530)
                      +.+.|+|.|.....
T Consensus        86 ~~v~l~v~R~~~~~   99 (110)
T 1um1_A           86 KKMRFLVAKSDVET   99 (110)
T ss_dssp             SEEEEEEECCCHHH
T ss_pred             CeEEEEEEeCCcce
Confidence            99999999876443

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.99  E-value=1.3e-09  Score=89.61  Aligned_cols=78  Identities=26%  Similarity=0.450  Sum_probs=65.7

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GSV  499 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~t  499 (530)
                      ++++|+|.++.. .|||.+.+|       .|..|.++|+|+++| |+.||+|++|||+++.+++..++..++++.  ++.
T Consensus         2 ~~~~v~l~~~~~-g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   80 (90)
T 2q9v_A            2 MEQDIFLWRKET-GFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH   80 (90)
T ss_dssp             EEEEEEEECBTT-BCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             CcEEEEEEECCC-ccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            356777777764 499999754       289999999999999 999999999999999999889999998865  448


Q ss_pred             EEEEEEeCc
Q psy9257         500 LTLTLIPTS  508 (530)
Q Consensus       500 VtLtVip~~  508 (530)
                      ++|+|.|..
T Consensus        81 v~l~v~R~~   89 (90)
T 2q9v_A           81 VNLTVRQTR   89 (90)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            999998753

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.99  E-value=2.2e-09  Score=91.16  Aligned_cols=78  Identities=26%  Similarity=0.442  Sum_probs=68.3

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ..++|+|.+...+.|||.+..+      . |..|.++++|+++||+.||+|++|||+.|.+++.+++..+|+. ++.+.|
T Consensus        15 ~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l   93 (104)
T 1wi2_A           15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISM   93 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEE
T ss_pred             CCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEE
Confidence            4577888888777899999753      3 8999999999999999999999999999999888999999988 788999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.+..
T Consensus        94 ~v~r~~   99 (104)
T 1wi2_A           94 RVRFFS   99 (104)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            998754

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.99  E-value=2.8e-09  Score=87.26  Aligned_cols=75  Identities=25%  Similarity=0.404  Sum_probs=62.7

Q ss_pred             eeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ++|++. . ...|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.++...++..++++.++.+.|+|
T Consensus         5 ~~v~l~-~-~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v   82 (88)
T 2uzc_A            5 YSVSLV-G-PAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTL   82 (88)
T ss_dssp             EEEEEE-S-SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEE
T ss_pred             EEEEEc-C-CCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            445552 2 24589998753       28899999999999999999999999999999988889988988899999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .|..
T Consensus        83 ~R~g   86 (88)
T 2uzc_A           83 QRES   86 (88)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8754

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.99  E-value=2.3e-09  Score=90.28  Aligned_cols=78  Identities=27%  Similarity=0.433  Sum_probs=66.7

Q ss_pred             eeeEEeccCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      .++|+|.++. ..|||.+.+           |. |..|.++++|+++| |+.||+|++|||+++.+++..++...+++.+
T Consensus         5 ~~~v~l~k~~-~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   83 (102)
T 2i1n_A            5 YEEIVLERGN-SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG   83 (102)
T ss_dssp             EEEEEEECBT-TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             EEEEEEEECC-CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3566677664 459999974           33 88999999999999 9999999999999999999899999999889


Q ss_pred             CEEEEEEEeCcc
Q psy9257         498 SVLTLTLIPTSM  509 (530)
Q Consensus       498 ~tVtLtVip~~~  509 (530)
                      +.+.|+|.|...
T Consensus        84 ~~v~l~v~R~~~   95 (102)
T 2i1n_A           84 PVVRLVVRRRQP   95 (102)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CeEEEEEEeCCC
Confidence            999999988653

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.98  E-value=2.7e-09  Score=93.42  Aligned_cols=77  Identities=23%  Similarity=0.371  Sum_probs=68.7

Q ss_pred             eeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      .+++++.++..+.|||.+.+|       .|..|.++++|+++| |+.||+|++|||+++.+++.+++..++++.++.++|
T Consensus        20 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l   99 (125)
T 3hpk_A           20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI   99 (125)
T ss_dssp             EEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred             CeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            467778888888899998754       288999999999999 999999999999999999999999999988889999


Q ss_pred             EEEeC
Q psy9257         503 TLIPT  507 (530)
Q Consensus       503 tVip~  507 (530)
                      +|.+.
T Consensus       100 ~v~r~  104 (125)
T 3hpk_A          100 HYNKL  104 (125)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.98  E-value=3e-09  Score=89.19  Aligned_cols=71  Identities=30%  Similarity=0.467  Sum_probs=60.1

Q ss_pred             eccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         353 CKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       353 ~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      .......|||.+..   | +|..|.++|+|+++||+.||+|++|||+.+.+.+..++..+++.. +..|.|+|.+.
T Consensus        19 ~~~~~~~lG~~~~~---G-~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~p~   89 (90)
T 1y7n_A           19 RPDLRYQLGFSVQN---G-IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA-VGEIHMKTMPA   89 (90)
T ss_dssp             ESSTTSCCCEEEET---T-EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHC-CEEEEEEEECC
T ss_pred             eCCCccccCeEecC---C-EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            34556679998853   4 899999999999999999999999999999888888899999864 78888888753

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.7e-09  Score=88.07  Aligned_cols=78  Identities=23%  Similarity=0.377  Sum_probs=66.3

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      ..++|+|.+.. ..|||.+..+      . |..|.++++|+++| |+.||+|++|||+++.+++.+++..+++..++.+.
T Consensus         5 ~~r~v~l~k~~-~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   83 (93)
T 2dkr_A            5 SSGVVELPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK   83 (93)
T ss_dssp             CSCEEEEECCT-TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEEeCC-CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            45677777765 5599999742      2 89999999999996 99999999999999999988899999998888999


Q ss_pred             EEEEeCc
Q psy9257         502 LTLIPTS  508 (530)
Q Consensus       502 LtVip~~  508 (530)
                      |+|.|..
T Consensus        84 l~v~r~~   90 (93)
T 2dkr_A           84 LVVRSGP   90 (93)
T ss_dssp             EEECCCC
T ss_pred             EEEEeCC
Confidence            9998754

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.98  E-value=3.1e-09  Score=91.65  Aligned_cols=79  Identities=32%  Similarity=0.536  Sum_probs=67.3

Q ss_pred             CceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      .+.++|+|.++..+ |||.+.++       .|..|.++++|+++| |+.||+|++|||++|.+++..++..++++.++.+
T Consensus        23 ~~~~~v~l~~~~~g-lG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v  101 (112)
T 2r4h_A           23 MDFYTVELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRV  101 (112)
T ss_dssp             CCEEEEEEECBTTB-TSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CceEEEEEEcCCCc-cCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            35566777666544 99998754       388999999999999 9999999999999999998888998898889999


Q ss_pred             EEEEEeCc
Q psy9257         501 TLTLIPTS  508 (530)
Q Consensus       501 tLtVip~~  508 (530)
                      +|+|.|..
T Consensus       102 ~l~v~R~~  109 (112)
T 2r4h_A          102 RLFLKRGE  109 (112)
T ss_dssp             EEEEECCE
T ss_pred             EEEEEeCC
Confidence            99998764

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.98  E-value=3.1e-09  Score=86.47  Aligned_cols=73  Identities=32%  Similarity=0.462  Sum_probs=60.9

Q ss_pred             eEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCEEEE
Q psy9257         433 TVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GSVLTL  502 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~tVtL  502 (530)
                      ++++.+... .|||.+.++       .|..|.++++|+++| |+.||+|++|||+++.+++.+++..+++..  ++.+.|
T Consensus         3 ~v~l~k~~~-g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   81 (85)
T 2i04_A            3 HTKLRKSSR-GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL   81 (85)
T ss_dssp             EEEEECBTT-BSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEE
T ss_pred             EEEEEECCC-CCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence            455555544 489988653       388999999999999 999999999999999999888999999865  789999


Q ss_pred             EEEe
Q psy9257         503 TLIP  506 (530)
Q Consensus       503 tVip  506 (530)
                      +|.|
T Consensus        82 ~v~R   85 (85)
T 2i04_A           82 ELCR   85 (85)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8854

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.98  E-value=4.1e-09  Score=88.08  Aligned_cols=79  Identities=27%  Similarity=0.393  Sum_probs=66.2

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      ..++++|.+. .+.|||.+..+      . |..|.++++|+++| |+.||+|++|||+.+.+++.+++..+++..++.+.
T Consensus         5 ~~~~v~l~~~-~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~   83 (97)
T 1n7e_A            5 IIYTVELKRY-GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT   83 (97)
T ss_dssp             CEEEEEEECT-TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             eEEEEEEEeC-CCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            3456666554 44599998643      2 89999999999999 99999999999999999988899999988889999


Q ss_pred             EEEEeCcc
Q psy9257         502 LTLIPTSM  509 (530)
Q Consensus       502 LtVip~~~  509 (530)
                      |+|.|...
T Consensus        84 l~v~R~~~   91 (97)
T 1n7e_A           84 LKIKKQTD   91 (97)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeCCC
Confidence            99987653

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.98  E-value=2e-09  Score=91.43  Aligned_cols=78  Identities=17%  Similarity=0.295  Sum_probs=67.0

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC--CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC--
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG--LLVNHNILEVNGANVVGLKDKELLEAMEKGGS--  498 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG--Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~--  498 (530)
                      ..+.+.|.++..+.|||.+.+|       .|..|.++++|+++|  |+.||+|++|||++|.++++.++..++++.++  
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~   96 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH   96 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSB
T ss_pred             CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccC
Confidence            4566778887777899998653       288999999999999  99999999999999999999999999987654  


Q ss_pred             --EEEEEEEeC
Q psy9257         499 --VLTLTLIPT  507 (530)
Q Consensus       499 --tVtLtVip~  507 (530)
                        .+.|+|.|.
T Consensus        97 ~~~v~l~v~r~  107 (107)
T 3nfk_A           97 SGELMLLVRPN  107 (107)
T ss_dssp             TTBEEEEEECC
T ss_pred             CcEEEEEEEcC
Confidence              899998763

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=3.4e-09  Score=90.26  Aligned_cols=78  Identities=28%  Similarity=0.528  Sum_probs=67.0

Q ss_pred             ceeeEEeccCCCCccceeecc--------------Cc-EEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHH
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK--------------GQ-IVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAM  493 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~--------------Gv-V~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iL  493 (530)
                      +.++|+|.++ ...|||.+.+              |. |..|.++++|+++ ||+.||+|++|||++|.++++.++..++
T Consensus         8 ~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~   86 (107)
T 1uhp_A            8 KSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             EEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4566777776 4568999863              23 8899999999999 8999999999999999999999999999


Q ss_pred             HhCCCEEEEEEEeCc
Q psy9257         494 EKGGSVLTLTLIPTS  508 (530)
Q Consensus       494 krsG~tVtLtVip~~  508 (530)
                      ++.++.+.|+|.|..
T Consensus        87 ~~~~~~v~l~v~R~~  101 (107)
T 1uhp_A           87 KTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHCCSSEEEEEEECC
T ss_pred             HcCCCcEEEEEEeCC
Confidence            988899999998764

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.97  E-value=2.1e-09  Score=91.83  Aligned_cols=77  Identities=25%  Similarity=0.450  Sum_probs=66.7

Q ss_pred             eeeEEeccCCCCccceeecc----Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK----GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~----Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      .+.+.|.|.....|||.+..    |. |..|.++++|+++| |+.||+|++|||++|.+++.+++..+|+..++.++|+|
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V   92 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV   92 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEE
T ss_pred             cEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            45677777777779999863    33 88999999999999 99999999999999999777899999998888999999


Q ss_pred             EeC
Q psy9257         505 IPT  507 (530)
Q Consensus       505 ip~  507 (530)
                      .+.
T Consensus        93 ~~~   95 (97)
T 2ejy_A           93 IPN   95 (97)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            875

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.97  E-value=2.3e-09  Score=88.11  Aligned_cols=75  Identities=27%  Similarity=0.392  Sum_probs=63.0

Q ss_pred             eeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      +++++..  ...|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.+++..++..++++.++.+.|+|
T Consensus         5 ~~v~~~~--~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v   82 (89)
T 2q3g_A            5 FKVVLEG--PAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL   82 (89)
T ss_dssp             EEEEEES--SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEE
T ss_pred             EEEEEcC--CCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence            3444543  35699998653       28899999999999999999999999999999988899999988899999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .|..
T Consensus        83 ~R~~   86 (89)
T 2q3g_A           83 SRAI   86 (89)
T ss_dssp             EEEC
T ss_pred             EeCC
Confidence            8754

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.97  E-value=5.5e-10  Score=97.19  Aligned_cols=80  Identities=25%  Similarity=0.321  Sum_probs=67.0

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .|.|.+.+. .+.|||.+. ...+++|..|.++++|+++||+.||+|++|||+.+.+++.+++..+++...+..+.|+|.
T Consensus        16 ~r~v~l~~~-~~~~G~~l~-~~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~   93 (111)
T 1vae_A           16 PRGIHFTVE-EGDLGFTLR-GNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV   93 (111)
T ss_dssp             CCCCCEECC-SSCCSCCEE-SSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE
T ss_pred             CeEEEEEcC-CCcccEEEe-CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEE
Confidence            355666664 466899886 446899999999999999999999999999999999777777889998877777899887


Q ss_pred             cC
Q psy9257         427 DR  428 (530)
Q Consensus       427 R~  428 (530)
                      |.
T Consensus        94 ~~   95 (111)
T 1vae_A           94 SL   95 (111)
T ss_dssp             CE
T ss_pred             ec
Confidence            63

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=2.9e-09  Score=92.90  Aligned_cols=78  Identities=18%  Similarity=0.348  Sum_probs=67.7

Q ss_pred             ceeeEEeccCCCCccceeeccC-----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      +.++|+|.++. ..|||.+.+|           . |..|.++|+|+++| |+.||+|++|||+.|.+++.+++..++++.
T Consensus        24 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  102 (117)
T 2byg_A           24 TVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT  102 (117)
T ss_dssp             EEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            44567777765 5699999742           3 88999999999999 999999999999999999999999999988


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.++|+|.|..
T Consensus       103 g~~v~l~v~R~~  114 (117)
T 2byg_A          103 SEVVYLKVGKPT  114 (117)
T ss_dssp             CSEEEEEEEEEE
T ss_pred             CCeEEEEEEeCC
Confidence            999999998754

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.97  E-value=4.1e-09  Score=90.72  Aligned_cols=79  Identities=18%  Similarity=0.381  Sum_probs=68.8

Q ss_pred             CCceeeEEeccCCCCccceeeccC-c----EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCE
Q psy9257         428 RPLERTVTLHRDSSGHFGFHFNKG-Q----IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK--GGSV  499 (530)
Q Consensus       428 ~~~e~tVtL~kd~~g~LGfs~~~G-v----V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~t  499 (530)
                      +++.++|.|.|.. ..|||++.++ .    |..|.++++|++.| |++||.|++|||++|.++++.+++++|++  .|.+
T Consensus         3 ~g~~k~V~l~K~~-~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~   81 (95)
T 3gge_A            3 KGIEKEVNVYKSE-DSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEEL   81 (95)
T ss_dssp             CEEEEEEEEECCS-SCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCE
T ss_pred             CCeEEEEEEEECC-CCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCE
Confidence            4567888888876 5699999742 1    89999999999998 99999999999999999999999999996  6779


Q ss_pred             EEEEEEeC
Q psy9257         500 LTLTLIPT  507 (530)
Q Consensus       500 VtLtVip~  507 (530)
                      ++|++++.
T Consensus        82 ~~L~lv~p   89 (95)
T 3gge_A           82 FTMKLIEP   89 (95)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEECc
Confidence            99988754

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=6.8e-10  Score=96.31  Aligned_cols=85  Identities=16%  Similarity=0.317  Sum_probs=72.1

Q ss_pred             CCceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHc--CCCCCCEEEEEcCeecCCCChHHHHHHHHhCC-
Q psy9257         428 RPLERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARN--GLLVNHNILEVNGANVVGLKDKELLEAMEKGG-  497 (530)
Q Consensus       428 ~~~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarA--GLr~GDrILeVNGq~V~gls~eeVv~iLkrsG-  497 (530)
                      ..+.++|+|.+...+.|||.+.+|       .|..|.++++|+++  ||+.||+|++|||++|.++++.++..+++..+ 
T Consensus        13 ~~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~   92 (119)
T 2cs5_A           13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE   92 (119)
T ss_dssp             SSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            345678888888878899999754       28899999999999  99999999999999999999999999998664 


Q ss_pred             ---CEEEEEEEeCcchhh
Q psy9257         498 ---SVLTLTLIPTSMYQH  512 (530)
Q Consensus       498 ---~tVtLtVip~~~~e~  512 (530)
                         ..+.|+|.|....+.
T Consensus        93 ~~~~~v~l~v~R~~~~~~  110 (119)
T 2cs5_A           93 RHSGELMLLVRPNAVYDV  110 (119)
T ss_dssp             CCSSCEEEEEECCCCCCC
T ss_pred             cCCCEEEEEEEcccccCc
Confidence               589999988765443

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.96  E-value=3.2e-09  Score=88.10  Aligned_cols=78  Identities=22%  Similarity=0.445  Sum_probs=66.0

Q ss_pred             eeeEEeccCCCCccceeeccC------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      .+.++|.++. ..|||.+..+      .|..|.++++|+++| |+.||+|++|||+++.+++.+++..+|+..++.++|+
T Consensus         5 ~r~v~l~k~~-~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   83 (93)
T 3o46_A            5 VKIIRLVKNR-EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK   83 (93)
T ss_dssp             CEEEEEEESS-SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEE
T ss_pred             EEEEEEEeCC-CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4556677764 3699998644      289999999999999 9999999999999999999999999999888899999


Q ss_pred             EEeCcc
Q psy9257         504 LIPTSM  509 (530)
Q Consensus       504 Vip~~~  509 (530)
                      |.+...
T Consensus        84 v~~~~~   89 (93)
T 3o46_A           84 IIPGSK   89 (93)
T ss_dssp             EECC--
T ss_pred             EEeCCC
Confidence            998654

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.96  E-value=3e-09  Score=89.13  Aligned_cols=75  Identities=24%  Similarity=0.424  Sum_probs=63.1

Q ss_pred             eEEeccCCCCccceeeccC--------------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257         433 TVTLHRDSSGHFGFHFNKG--------------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGS  498 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~G--------------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~  498 (530)
                      ++.+.+. ...+||.+..+              .|..|.++|+|+++||+.||+|++|||+++.+++.+++...+++.++
T Consensus         5 ~v~l~~~-~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   83 (99)
T 3khf_A            5 PIVIHSS-GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGN   83 (99)
T ss_dssp             CEEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CEEEEeC-CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            4455554 34488887622              38899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCc
Q psy9257         499 VLTLTLIPTS  508 (530)
Q Consensus       499 tVtLtVip~~  508 (530)
                      .+.|++.|..
T Consensus        84 ~v~l~v~r~~   93 (99)
T 3khf_A           84 KISLRTTALE   93 (99)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEEECC
Confidence            9999999865

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.96  E-value=1.7e-09  Score=95.07  Aligned_cols=80  Identities=19%  Similarity=0.302  Sum_probs=68.6

Q ss_pred             ceeeEEeccCCCCccceeecc---------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecC-CCChHHHHHHHHhCC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVV-GLKDKELLEAMEKGG  497 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~-gls~eeVv~iLkrsG  497 (530)
                      +.++|+|.+...+.|||.+.+         |. |..|.++++|+++| |+.||+|++|||++|. +++.+++..+|+..+
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~  104 (128)
T 2db5_A           25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTT  104 (128)
T ss_dssp             EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCC
T ss_pred             ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence            455666777766679999853         33 88999999999999 9999999999999997 999999999999999


Q ss_pred             CEEEEEEEeCcc
Q psy9257         498 SVLTLTLIPTSM  509 (530)
Q Consensus       498 ~tVtLtVip~~~  509 (530)
                      +.++|+|.|...
T Consensus       105 ~~v~l~v~r~~~  116 (128)
T 2db5_A          105 GSLRLIVAREPV  116 (128)
T ss_dssp             SEEEEEEEECCC
T ss_pred             CeEEEEEEcCCC
Confidence            999999998753

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=4e-10  Score=94.77  Aligned_cols=79  Identities=22%  Similarity=0.285  Sum_probs=67.4

Q ss_pred             ceEEEeccCC-CeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         348 RELVLCKDAS-GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       348 r~V~L~K~s~-G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      ++|.+.+... +.|||.+.. ..+++|..|.++++|+ +||+.||+|++|||+.|.++++.++..+++. .++.|.|+|.
T Consensus        10 ~~v~l~~~~~~~~~G~~l~~-~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~   86 (96)
T 2edv_A           10 HTVKIDKDTLLQDYGFHISE-SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVV   86 (96)
T ss_dssp             EEEEECCCSSSCSCSBCCCS-SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEE
T ss_pred             EEEEEEECCCCCcccEEEec-CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence            4677777653 468999874 6799999999999996 9999999999999999999988888888877 5788999998


Q ss_pred             cCC
Q psy9257         427 DRP  429 (530)
Q Consensus       427 R~~  429 (530)
                      |+.
T Consensus        87 R~~   89 (96)
T 2edv_A           87 RCT   89 (96)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            864

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.96  E-value=2.2e-09  Score=92.64  Aligned_cols=81  Identities=21%  Similarity=0.324  Sum_probs=68.1

Q ss_pred             ceeeEEeccCCCCccceeeccC---------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecC-CCChHHHHHHHHhCC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG---------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVV-GLKDKELLEAMEKGG  497 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G---------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~-gls~eeVv~iLkrsG  497 (530)
                      +.++++|.+...+.|||.+.++         . |..|.++|+|+++| |+.||+|++|||+.+. +++.+++..++++.+
T Consensus        20 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~   99 (117)
T 2o2t_A           20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK   99 (117)
T ss_dssp             CEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence            3455666666666789988632         2 77899999999999 9999999999999998 888899999999899


Q ss_pred             CEEEEEEEeCcch
Q psy9257         498 SVLTLTLIPTSMY  510 (530)
Q Consensus       498 ~tVtLtVip~~~~  510 (530)
                      +.+.|+|.|....
T Consensus       100 ~~v~l~v~R~~~~  112 (117)
T 2o2t_A          100 DTVQLVIARGSLP  112 (117)
T ss_dssp             SEEEEEEESSCCG
T ss_pred             CEEEEEEEeCCcc
Confidence            9999999987644

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.96  E-value=1.8e-09  Score=112.85  Aligned_cols=84  Identities=24%  Similarity=0.336  Sum_probs=71.4

Q ss_pred             ccceEEEeccCCCeeEEEEEe-cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEE
Q psy9257         346 GIRELVLCKDASGLIGLRVCA-INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRV  423 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~-~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtL  423 (530)
                      .++.+.+.+.  ++|||++.+ ...|++|..|.+||+|+++||+.||+|++|||..+.+++.+++..+++. ..|+.|+|
T Consensus         9 ~~~~v~~~k~--~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l   86 (391)
T 3tsz_A            9 SMKLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI   86 (391)
T ss_dssp             CEEEEEEECC--SSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEE
T ss_pred             CcEEEEeecC--CceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEE
Confidence            3445555554  359999987 4579999999999999999999999999999999999989889999986 67889999


Q ss_pred             EEecCCce
Q psy9257         424 VIRDRPLE  431 (530)
Q Consensus       424 tVrR~~~e  431 (530)
                      +|.|++++
T Consensus        87 ~v~r~~~~   94 (391)
T 3tsz_A           87 LAQKKKDV   94 (391)
T ss_dssp             EEEECHHH
T ss_pred             EEeeCCcc
Confidence            99987544

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=5.1e-09  Score=91.71  Aligned_cols=78  Identities=23%  Similarity=0.368  Sum_probs=66.5

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK--GGSV  499 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~t  499 (530)
                      +.++|+|.++.. .|||.+.+|      . |..|.++++|+++| |+.||+|++|||+.|.+++.+++..+|++  .++.
T Consensus        19 ~~~~v~l~~~~~-glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~   97 (123)
T 1ueq_A           19 TFLSTTLKKSNM-GFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS   97 (123)
T ss_dssp             EEEEEEEECCTT-SCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred             cEEEEEEEeCCC-ceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            445666766644 499998743      3 88999999999999 99999999999999999998999999987  5799


Q ss_pred             EEEEEEeCc
Q psy9257         500 LTLTLIPTS  508 (530)
Q Consensus       500 VtLtVip~~  508 (530)
                      ++|+|.|..
T Consensus        98 v~l~v~R~~  106 (123)
T 1ueq_A           98 VNLVLCRGY  106 (123)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEeCC
Confidence            999998875

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.95  E-value=1.2e-09  Score=94.12  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=68.1

Q ss_pred             eeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      .++++|.++....|||.+..   |. |..|.++|+|+++| |+.||+|++|||++|.++.+.++..+++..++.+.|+|.
T Consensus         3 ~~~v~L~k~~~~glG~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~   82 (106)
T 2la8_A            3 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT   82 (106)
T ss_dssp             EEEEEECCBSSSTTCCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEE
T ss_pred             EEEEEEEeCCCCccCEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Confidence            45677776666678998753   44 88999999999999 999999999999999998888888888888888999998


Q ss_pred             eCcchh
Q psy9257         506 PTSMYQ  511 (530)
Q Consensus       506 p~~~~e  511 (530)
                      |.....
T Consensus        83 R~~~~~   88 (106)
T 2la8_A           83 RPKPGS   88 (106)
T ss_dssp             ECCSCS
T ss_pred             eCCCCC
Confidence            865433

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.95  E-value=5.2e-09  Score=86.96  Aligned_cols=77  Identities=30%  Similarity=0.520  Sum_probs=64.7

Q ss_pred             eeeEEeccCCCCccceeecc------------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK------------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~------------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ++++.+.++ .+.|||.+.+            |. |..|.++++|+++||+.||+|++|||+++.++.+.++...+++.+
T Consensus         4 ~~~v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   82 (97)
T 2w4f_A            4 ELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG   82 (97)
T ss_dssp             EEEEEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             EEEEEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCC
Confidence            455666666 4569999863            22 889999999999999999999999999999998877777777889


Q ss_pred             CEEEEEEEeCc
Q psy9257         498 SVLTLTLIPTS  508 (530)
Q Consensus       498 ~tVtLtVip~~  508 (530)
                      +.+.|+|.|..
T Consensus        83 ~~v~l~v~R~g   93 (97)
T 2w4f_A           83 TAVQMRVWRER   93 (97)
T ss_dssp             SEEEEEEECCS
T ss_pred             CeEEEEEEeCC
Confidence            99999999875

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=1.7e-09  Score=91.69  Aligned_cols=77  Identities=29%  Similarity=0.421  Sum_probs=65.6

Q ss_pred             eeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GSVL  500 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~tV  500 (530)
                      .++++|.++.. .|||.+..|       .|..|.++++|+++| |+.||+|++|||++|.+++.+++..+|+..  ++.+
T Consensus        10 ~~~v~l~~~~~-g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v   88 (103)
T 1uep_A           10 ELDVHLRRMES-GFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQV   88 (103)
T ss_dssp             EECCEEESSSS-SCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEE
T ss_pred             EEEEEEEeCCC-ccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcE
Confidence            45566777544 499998753       299999999999999 999999999999999999889999999876  7999


Q ss_pred             EEEEEeCc
Q psy9257         501 TLTLIPTS  508 (530)
Q Consensus       501 tLtVip~~  508 (530)
                      +|+|.|..
T Consensus        89 ~l~v~R~~   96 (103)
T 1uep_A           89 NLTVRRKV   96 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCC
Confidence            99998865

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.95  E-value=1.1e-09  Score=94.03  Aligned_cols=81  Identities=20%  Similarity=0.233  Sum_probs=66.7

Q ss_pred             ceeeEEeccCCCCccceeeccC---------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC---
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG---------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG---  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G---------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs---  496 (530)
                      +.+++.|.++....|||.+.++         .|..|.++++|+++| |+.||+|++|||+++.+++.+++..+|++.   
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   84 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK   84 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence            3456777765556689998643         289999999999999 999999999999999999999999999865   


Q ss_pred             CCEEEEEEEeCcch
Q psy9257         497 GSVLTLTLIPTSMY  510 (530)
Q Consensus       497 G~tVtLtVip~~~~  510 (530)
                      ++.++|+|.|....
T Consensus        85 ~~~v~l~v~R~~~~   98 (108)
T 3cbz_A           85 PGPIVLTVAKSGGG   98 (108)
T ss_dssp             SSCEEEEEECCCC-
T ss_pred             CCeEEEEEEeCCCC
Confidence            55799999886543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.94  E-value=1.6e-09  Score=116.06  Aligned_cols=83  Identities=24%  Similarity=0.326  Sum_probs=71.4

Q ss_pred             cceEEEeccCCCeeEEEEEec-CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLt  424 (530)
                      +|.|.+.|.  +.|||.+.++ ..|++|..|.+||+|+++||+.||+|++|||+.+.+++.+++..+++.. .+..|+|+
T Consensus         2 ~r~V~l~k~--~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~   79 (468)
T 3shw_A            2 MKLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL   79 (468)
T ss_dssp             EEEEEEECC--SSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE
T ss_pred             ceEEEEecC--CccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence            356677675  5699998765 4799999999999999999999999999999999999998899999874 67899999


Q ss_pred             EecCCce
Q psy9257         425 IRDRPLE  431 (530)
Q Consensus       425 VrR~~~e  431 (530)
                      |.|+++.
T Consensus        80 V~r~g~~   86 (468)
T 3shw_A           80 AQKKKDV   86 (468)
T ss_dssp             EEECHHH
T ss_pred             EEECCcc
Confidence            9987543

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=4.3e-09  Score=91.50  Aligned_cols=79  Identities=23%  Similarity=0.417  Sum_probs=68.0

Q ss_pred             ceeeEEeccCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      ..++|+|.++. ..|||.+..           |. |..|.++++|+++| |+.||+|++|||++|.++.+.++..++++.
T Consensus        17 ~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   95 (120)
T 2eno_A           17 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   95 (120)
T ss_dssp             EEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred             ceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            44567777776 569999875           22 88999999999999 999999999999999999988999999887


Q ss_pred             CCEEEEEEEeCcc
Q psy9257         497 GSVLTLTLIPTSM  509 (530)
Q Consensus       497 G~tVtLtVip~~~  509 (530)
                      ++.+.|+|.|...
T Consensus        96 g~~v~l~v~R~~~  108 (120)
T 2eno_A           96 GYAVSLRVQHRLQ  108 (120)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEeCCc
Confidence            8999999988653

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.94  E-value=2.2e-09  Score=92.88  Aligned_cols=80  Identities=25%  Similarity=0.408  Sum_probs=69.2

Q ss_pred             ceeeEEeccCCCCccceeecc---------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      ..++++|.++....|||.+.+               |. |..|.++++|+++| |+.||+|++|||++|.+++..++..+
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   94 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEA   94 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            456788888876779999853               23 88999999999999 99999999999999999999999999


Q ss_pred             HHhCCCEEEEEEEeCcc
Q psy9257         493 MEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       493 LkrsG~tVtLtVip~~~  509 (530)
                      +++.++.+.|+|.+...
T Consensus        95 ~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           95 IKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHTSCSSEEEEECCBSC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            99889999999976543

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.94  E-value=1.8e-09  Score=91.14  Aligned_cols=80  Identities=30%  Similarity=0.463  Sum_probs=68.2

Q ss_pred             ceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      +.++|+|.++.. .|||.+..     |. |..|.++++|+++||+.||+|++|||+++.++..+++...++..++.+.|+
T Consensus         6 ~~r~v~l~k~~~-g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   84 (102)
T 2d90_A            6 SGRVVVIKKGSN-GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL   84 (102)
T ss_dssp             SSEEEEEECCSS-SSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEE
T ss_pred             CCEEEEEeeCCC-CccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            457778887765 49999873     33 889999999999999999999999999999998888999998889999999


Q ss_pred             EEeCcch
Q psy9257         504 LIPTSMY  510 (530)
Q Consensus       504 Vip~~~~  510 (530)
                      |.+....
T Consensus        85 v~r~~~~   91 (102)
T 2d90_A           85 VLDKEAE   91 (102)
T ss_dssp             ECSTTCC
T ss_pred             EEECCCc
Confidence            9876543

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.94  E-value=3.9e-09  Score=85.73  Aligned_cols=75  Identities=25%  Similarity=0.387  Sum_probs=62.5

Q ss_pred             eeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ++|+|..  ...|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.+++..++...++..++.+.|+|
T Consensus         3 ~~v~l~~--~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   80 (85)
T 1rgw_A            3 YSVTLTG--PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL   80 (85)
T ss_dssp             EEEEECC--SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEE
T ss_pred             EEEEEeC--CCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEE
Confidence            4455532  24599998754       39999999999999999999999999999999988889888887778899999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .|..
T Consensus        81 ~R~~   84 (85)
T 1rgw_A           81 QKSK   84 (85)
T ss_dssp             ESCC
T ss_pred             EeCC
Confidence            7753

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=92.10  Aligned_cols=83  Identities=27%  Similarity=0.509  Sum_probs=69.3

Q ss_pred             ceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      +.++|+|.++ .+.|||.+..     |. |..|.++++|+++||+.||+|++|||+++.+++..++...+++.++.+.|+
T Consensus         8 ~~r~v~l~k~-~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~   86 (106)
T 2eei_A            8 QPRLCYLVKE-GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFL   86 (106)
T ss_dssp             SSEEEEEECC-SSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEE
T ss_pred             CCEEEEEEEC-CCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4567778775 4558999842     33 889999999999999999999999999999998889998888878999999


Q ss_pred             EEeCcchhhh
Q psy9257         504 LIPTSMYQHM  513 (530)
Q Consensus       504 Vip~~~~e~m  513 (530)
                      |.+....+.+
T Consensus        87 v~r~~~~~~~   96 (106)
T 2eei_A           87 LVDKETDKRH   96 (106)
T ss_dssp             ECCTTTSCCC
T ss_pred             EEcCchhhHH
Confidence            9887655444

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.94  E-value=3.2e-09  Score=90.46  Aligned_cols=77  Identities=21%  Similarity=0.366  Sum_probs=66.0

Q ss_pred             eeeEEeccCCCCccceeecc------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      .++|.|.+... .|||.+.+            |. |..|.++++|+++| |+.||+|++|||+++.++++.++..++++.
T Consensus        10 ~~~v~l~k~~~-glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   88 (107)
T 1wf8_A           10 LFPVELEKDED-GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT   88 (107)
T ss_dssp             EEEEEEECBTT-BSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC
T ss_pred             EEEEEEEECCC-cccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            34566666544 49999876            22 88999999999999 999999999999999999999999999988


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.+.|+|.|..
T Consensus        89 ~~~v~l~v~R~~  100 (107)
T 1wf8_A           89 KGNVRFVIGREK  100 (107)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEeCC
Confidence            999999998764

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.93  E-value=3.8e-09  Score=87.13  Aligned_cols=76  Identities=24%  Similarity=0.357  Sum_probs=64.1

Q ss_pred             eeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      +++.+...  ..|||.+.++       .|..|.++|+|+++||+.||+|++|||+++.++.+.++..+++..++.+.|+|
T Consensus         5 ~~v~~~~~--~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   82 (91)
T 2pkt_A            5 QQIDLQGP--GPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTV   82 (91)
T ss_dssp             EEEEEESS--SCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             EEEEECCC--CCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            34444433  4589998754       38899999999999999999999999999999998899999988899999999


Q ss_pred             EeCcc
Q psy9257         505 IPTSM  509 (530)
Q Consensus       505 ip~~~  509 (530)
                      .|...
T Consensus        83 ~R~g~   87 (91)
T 2pkt_A           83 ARSEH   87 (91)
T ss_dssp             EEECC
T ss_pred             EECCc
Confidence            88653

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.93  E-value=4.5e-09  Score=87.52  Aligned_cols=77  Identities=26%  Similarity=0.455  Sum_probs=64.3

Q ss_pred             ceeeEEeccCCCCccceeecc--Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEe
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK--GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP  506 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~--Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip  506 (530)
                      ..+++.|.++.. .|||.+..  |. |..|.++++|+++||+.||+|++|||+++.++.+.++...++ .++.++|+|.|
T Consensus         8 ~~r~v~l~~~~~-~~G~~l~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R   85 (93)
T 2dls_A            8 VQRCVIIQKDQH-GFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLG   85 (93)
T ss_dssp             CEEEEEEECSSS-SCCEEEECSSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEEEC
T ss_pred             CCEEEEEEeCCC-ceeEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEEEE
Confidence            456677777664 48999864  33 889999999999999999999999999999998777777665 68999999988


Q ss_pred             Cc
Q psy9257         507 TS  508 (530)
Q Consensus       507 ~~  508 (530)
                      ..
T Consensus        86 ~~   87 (93)
T 2dls_A           86 SS   87 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.93  E-value=3.6e-09  Score=90.49  Aligned_cols=80  Identities=24%  Similarity=0.417  Sum_probs=67.7

Q ss_pred             ceeeEEeccCCCCccceeeccC----c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG----Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G----v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      ..++|.|.++.. .|||.+.++    . |..|.++++|+++| |+.||+|++|||+.|.+++.+++..++++.++.+.|+
T Consensus        15 ~~~~v~l~~~~~-~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~   93 (111)
T 2dlu_A           15 HVEEVELINDGS-GLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRML   93 (111)
T ss_dssp             EEEEEEEECCSS-CCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEEeCCC-ccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            445677776654 499998744    3 88999999999999 9999999999999999998899999998888999999


Q ss_pred             EEeCcch
Q psy9257         504 LIPTSMY  510 (530)
Q Consensus       504 Vip~~~~  510 (530)
                      |.|....
T Consensus        94 v~R~~~~  100 (111)
T 2dlu_A           94 VARDPAG  100 (111)
T ss_dssp             EEESCTT
T ss_pred             EEeCCCC
Confidence            9887644

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.92  E-value=4.6e-09  Score=92.89  Aligned_cols=78  Identities=29%  Similarity=0.384  Sum_probs=65.1

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GSV  499 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~t  499 (530)
                      +.++|+|.++.. .|||.+.++       .|..|.++++|+++| |+.||+|++|||++|.+++++++..+|+..  ++.
T Consensus        18 ~~~~v~l~~~~~-g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~   96 (129)
T 2kpk_A           18 KFIHTKLRKSSR-GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS   96 (129)
T ss_dssp             EEEEEEEEECSS-CCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEE
T ss_pred             cEEEEEEEECCC-cccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            344555555443 489988753       388999999999999 999999999999999999989999999876  788


Q ss_pred             EEEEEEeCc
Q psy9257         500 LTLTLIPTS  508 (530)
Q Consensus       500 VtLtVip~~  508 (530)
                      ++|+|.|..
T Consensus        97 v~l~v~R~~  105 (129)
T 2kpk_A           97 VDLELCRGY  105 (129)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEeCC
Confidence            999998875

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=2.7e-09  Score=92.89  Aligned_cols=81  Identities=16%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             ceeeEEeccCCCCccceeeccC-------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      ..+.+.|.++....|||.+..+       . |..|.++++|+++| |+.||+|++|||+.|.+++.+++..+|++.++.+
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v   94 (117)
T 1v62_A           15 GPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKV   94 (117)
T ss_dssp             SSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEE
T ss_pred             CcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            4566778887766799998642       3 88999999999999 9999999999999999999999999999889999


Q ss_pred             EEEEEeCcch
Q psy9257         501 TLTLIPTSMY  510 (530)
Q Consensus       501 tLtVip~~~~  510 (530)
                      +|+|.|....
T Consensus        95 ~l~v~r~~~~  104 (117)
T 1v62_A           95 RLEILPVPQS  104 (117)
T ss_dssp             EEEECCBTTB
T ss_pred             EEEEEECCCC
Confidence            9999887543

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.92  E-value=5.2e-09  Score=90.37  Aligned_cols=79  Identities=25%  Similarity=0.426  Sum_probs=68.7

Q ss_pred             ceeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcCC-CCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNGL-LVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAGL-r~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ..++|.|.+.....|||.+..   |. |..|.++++|+++|| +.||+|++|||+.|.+++.+++..+|+..++.++|+|
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v  104 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL  104 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEE
T ss_pred             ceEEEEEEeCCCCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            446678888877679998863   33 889999999999998 9999999999999999998999999998888999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .|..
T Consensus       105 ~r~~  108 (113)
T 1va8_A          105 IPSS  108 (113)
T ss_dssp             ECCC
T ss_pred             EECC
Confidence            8765

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.92  E-value=3.1e-09  Score=92.95  Aligned_cols=80  Identities=23%  Similarity=0.274  Sum_probs=69.3

Q ss_pred             ceeeEEeccCCCCccceeeccC-----------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC-
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG-  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs-  496 (530)
                      +.++|+|.++....|||.+..+           .|..|.++++|+++| |+.||+|++|||+++.+++.+++..+|++. 
T Consensus        15 ~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   94 (122)
T 1v5q_A           15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             eeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5667888888767799999754           389999999999999 999999999999999998888999999854 


Q ss_pred             -CCEEEEEEEeCcc
Q psy9257         497 -GSVLTLTLIPTSM  509 (530)
Q Consensus       497 -G~tVtLtVip~~~  509 (530)
                       ++.++|+|.|...
T Consensus        95 ~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           95 ITSKVTLEIEFDVA  108 (122)
T ss_dssp             TTTCEEEEEEEECC
T ss_pred             CCCeEEEEEEECCc
Confidence             7899999988653

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.92  E-value=3e-09  Score=90.16  Aligned_cols=78  Identities=17%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEecc--C---CC
Q psy9257         368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLHR--D---SS  441 (530)
Q Consensus       368 ~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~k--d---~~  441 (530)
                      ..|++|..|.++|||+. ||+.||+|++|||+.+.++.+  +..++.. ..++.+.|+|.|+++.+++++..  .   ..
T Consensus         6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~~d--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~   82 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSSQE--FIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKKGT   82 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSHHH--HHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECSTTCC
T ss_pred             CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCCCCCC
Confidence            57999999999999995 999999999999999998755  6666665 35789999999988877766542  1   22


Q ss_pred             Cccceee
Q psy9257         442 GHFGFHF  448 (530)
Q Consensus       442 g~LGfs~  448 (530)
                      ..+|+..
T Consensus        83 ~~iGi~~   89 (100)
T 3i18_A           83 PGIGITL   89 (100)
T ss_dssp             EECSEEE
T ss_pred             cEEeEEE
Confidence            3467665

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=5.6e-09  Score=88.17  Aligned_cols=78  Identities=31%  Similarity=0.477  Sum_probs=66.4

Q ss_pred             ceeeEEeccCCCCccceeeccC---------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG---------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSV  499 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G---------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~t  499 (530)
                      +.++++|.+... .|||.+..+         .|..|.++++|+++| |+.||+|++|||+.|.++...++..++++.++.
T Consensus        11 ~~~~v~l~~~~~-g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   89 (104)
T 2djt_A           11 GHFSVELVRGYA-GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQ   89 (104)
T ss_dssp             CCEEEEEECCSS-SCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSE
T ss_pred             ceEEEEEEeCCC-CccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            456677777664 499998752         288999999999999 999999999999999999888888888888899


Q ss_pred             EEEEEEeCc
Q psy9257         500 LTLTLIPTS  508 (530)
Q Consensus       500 VtLtVip~~  508 (530)
                      +.|+|.|..
T Consensus        90 v~l~v~R~g   98 (104)
T 2djt_A           90 LHLVIRRPL   98 (104)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEEECC
Confidence            999998764

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=8.2e-09  Score=88.14  Aligned_cols=78  Identities=31%  Similarity=0.512  Sum_probs=66.2

Q ss_pred             ceeeEEeccCCCCccceeecc------------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK------------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~------------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      +.+++.+.++ .+.|||.+.+            |. |..|.++++|+++||+.||+|++|||+.+.++.+.++...+++.
T Consensus        15 ~~~~~~l~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~   93 (110)
T 1x5q_A           15 EELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA   93 (110)
T ss_dssp             EEEEEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             ceEEEEEecC-CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCC
Confidence            4556667776 4559999862            23 88999999999999999999999999999999888888888888


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.+.|+|.|..
T Consensus        94 g~~v~l~v~R~g  105 (110)
T 1x5q_A           94 GTAVQMRVWRES  105 (110)
T ss_dssp             CSEEEEEEEECS
T ss_pred             CCeEEEEEEECC
Confidence            999999999875

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.91  E-value=1e-09  Score=94.08  Aligned_cols=79  Identities=24%  Similarity=0.382  Sum_probs=69.1

Q ss_pred             ceeeEEeccCCCCccceeeccC----------------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG----------------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G----------------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      ..++|+|.++..+.|||.+.++                .|..|.++++|+++| |+.||+|++|||++|.+++.+++..+
T Consensus         9 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A            9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             ccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4566778887767799998754                288999999999999 99999999999999999999999999


Q ss_pred             HHhCCCEEEEEEEeCc
Q psy9257         493 MEKGGSVLTLTLIPTS  508 (530)
Q Consensus       493 LkrsG~tVtLtVip~~  508 (530)
                      ++..++.+.|+|.|..
T Consensus        89 l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           89 LRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HSSCSSEEEECCCCCC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9988999999998764

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.91  E-value=5.7e-09  Score=92.88  Aligned_cols=75  Identities=23%  Similarity=0.271  Sum_probs=64.1

Q ss_pred             EEeccCCCCccceeecc---------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCEE
Q psy9257         434 VTLHRDSSGHFGFHFNK---------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GSVL  500 (530)
Q Consensus       434 VtL~kd~~g~LGfs~~~---------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~tV  500 (530)
                      +++.++....|||.+.+         |. |..|.++++|+++| |+.||+|++|||+.+.+++++++..+|+..  ++.+
T Consensus        40 ~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v  119 (131)
T 1wfg_A           40 GSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQV  119 (131)
T ss_dssp             SCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEE
T ss_pred             EEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence            34555667779999964         22 88999999999999 999999999999999999999999999865  4899


Q ss_pred             EEEEEeCc
Q psy9257         501 TLTLIPTS  508 (530)
Q Consensus       501 tLtVip~~  508 (530)
                      +|+|.|..
T Consensus       120 ~l~v~R~g  127 (131)
T 1wfg_A          120 ELVVSRSG  127 (131)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEcCC
Confidence            99998753

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.91  E-value=9.3e-09  Score=89.45  Aligned_cols=81  Identities=22%  Similarity=0.351  Sum_probs=69.2

Q ss_pred             CceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      ...++|+|.++..+.|||.+.++      . |..|.++|+|+++| |+.||+|++|||+++.+.+.+++..+++..++.+
T Consensus        23 ~~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v  102 (114)
T 2gzv_A           23 MVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV  102 (114)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            35677888888888899999743      2 88999999999999 9999999999999998888889999998888889


Q ss_pred             EEEEEeCcc
Q psy9257         501 TLTLIPTSM  509 (530)
Q Consensus       501 tLtVip~~~  509 (530)
                      .|+|.+...
T Consensus       103 ~l~v~~~~~  111 (114)
T 2gzv_A          103 TIHYNKLQY  111 (114)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEeccc
Confidence            998866543

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.91  E-value=5.3e-09  Score=97.67  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=66.6

Q ss_pred             EEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         350 LVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      +.+.+.....|||.+.....|++|..|.++|+|+++| |+.||+|++|||+.|.++++.++..+++.. +..+.|+|.|.
T Consensus       117 v~l~~~~~~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~  195 (206)
T 3r0h_A          117 VDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRP  195 (206)
T ss_dssp             EEEECCTTCCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred             EEEecCCCCccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence            3444444556999998777899999999999999999 999999999999999999888888888764 57899998873

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.91  E-value=3.5e-09  Score=89.87  Aligned_cols=78  Identities=22%  Similarity=0.417  Sum_probs=66.6

Q ss_pred             ceeeEEeccCCCCccceeecc------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      +.++++|.++..+ |||.+.+            |. |..|.++++|+++| |+.||+|++|||+.+.+++.+++..++++
T Consensus         7 ~~~~v~l~~~~~g-lG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   85 (105)
T 1wha_A            7 GRHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             EEEEEEECCCTTC-CSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             eeEEEEEEeCCCc-cCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3456666666555 9999873            33 88999999999999 99999999999999999988999999998


Q ss_pred             CCCEEEEEEEeCc
Q psy9257         496 GGSVLTLTLIPTS  508 (530)
Q Consensus       496 sG~tVtLtVip~~  508 (530)
                      .++.+.|+|.|..
T Consensus        86 ~g~~v~l~v~R~~   98 (105)
T 1wha_A           86 ASPTIALLLEREA   98 (105)
T ss_dssp             CCSCEEEEEEECC
T ss_pred             CCCeEEEEEEECC
Confidence            8899999998865

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=6.3e-09  Score=87.58  Aligned_cols=79  Identities=24%  Similarity=0.384  Sum_probs=67.3

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ..++++|.+...+.|||.+..+      . |..|.++++|+++||+.||+|++|||+++.++..+++...++. ++.+.|
T Consensus        10 ~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l   88 (100)
T 2eeh_A           10 IIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHM   88 (100)
T ss_dssp             EECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEE
T ss_pred             eEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEE
Confidence            4566778887777899998643      3 8899999999999999999999999999999987778887776 789999


Q ss_pred             EEEeCcc
Q psy9257         503 TLIPTSM  509 (530)
Q Consensus       503 tVip~~~  509 (530)
                      +|.|...
T Consensus        89 ~v~R~g~   95 (100)
T 2eeh_A           89 MVRRMGS   95 (100)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9988753

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.90  E-value=5.6e-09  Score=87.58  Aligned_cols=79  Identities=15%  Similarity=0.240  Sum_probs=66.5

Q ss_pred             ceeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      +.++++|.+.....|||.+..   |. |..|.++|+|+++| |+.||+|++|||+.+.++.+.++..++++.++.+.|+|
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v   87 (96)
T 2qkv_A            8 EKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEV   87 (96)
T ss_dssp             CCEEEEEECBTTBCCCEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             ceEEEEEEeCCCCCccEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence            445667766555668988752   43 89999999999999 99999999999999999888888889998888999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .|..
T Consensus        88 ~R~~   91 (96)
T 2qkv_A           88 TRPK   91 (96)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8753

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.90  E-value=8.5e-09  Score=87.49  Aligned_cols=77  Identities=31%  Similarity=0.458  Sum_probs=65.1

Q ss_pred             ceeeEEeccCCCCccceeecc---------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS  498 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~  498 (530)
                      +.++++| +. ...|||.+.+         |. |..|.++|+|+++| |+.||+|++|||+++.+++..++...+++.++
T Consensus        11 ~~~~v~l-~~-~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   88 (106)
T 3axa_A           11 EIITVTL-KK-QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS   88 (106)
T ss_dssp             CEEEEEE-EC-SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             eEEEEEE-CC-CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4455666 33 3458999863         22 88999999999999 99999999999999999999999999998999


Q ss_pred             EEEEEEEeCc
Q psy9257         499 VLTLTLIPTS  508 (530)
Q Consensus       499 tVtLtVip~~  508 (530)
                      .+.|+|.|..
T Consensus        89 ~v~l~v~R~~   98 (106)
T 3axa_A           89 VVTLEVAKQG   98 (106)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            9999998865

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.90  E-value=6.6e-09  Score=87.42  Aligned_cols=78  Identities=28%  Similarity=0.461  Sum_probs=64.5

Q ss_pred             eeeEEeccCCCCccceeecc---------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHH
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK---------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAM  493 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~---------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iL  493 (530)
                      .+++.+.+.....|||.+.+               |. |..|.++|+|+++| |+.||+|++|||+++.+++.+++..++
T Consensus         5 p~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l   84 (103)
T 2fcf_A            5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   84 (103)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35566666666668887742               33 88999999999999 999999999999999998889999999


Q ss_pred             HhCCCEEEEEEEeCc
Q psy9257         494 EKGGSVLTLTLIPTS  508 (530)
Q Consensus       494 krsG~tVtLtVip~~  508 (530)
                      +..++.+.|+|.|..
T Consensus        85 ~~~~~~v~l~v~r~~   99 (103)
T 2fcf_A           85 RKAGNPVVFMVQSII   99 (103)
T ss_dssp             HTCCSSEEEEEECCC
T ss_pred             HhCCCcEEEEEEECC
Confidence            987789999998764

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.90  E-value=6.6e-09  Score=88.30  Aligned_cols=79  Identities=28%  Similarity=0.454  Sum_probs=66.0

Q ss_pred             ceeeEEec-cCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         430 LERTVTLH-RDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       430 ~e~tVtL~-kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      +.++++|. +.....|||.+..           |. |..|.++++|+++| |+.||+|++|||++|.+++.+++..+++.
T Consensus        12 ~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   91 (108)
T 2jre_A           12 SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN   91 (108)
T ss_dssp             EEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            34556664 3445569999864           33 88999999999999 99999999999999999988889988888


Q ss_pred             CCCEEEEEEEeCc
Q psy9257         496 GGSVLTLTLIPTS  508 (530)
Q Consensus       496 sG~tVtLtVip~~  508 (530)
                      .++.+.|+|.|..
T Consensus        92 ~g~~v~l~v~R~~  104 (108)
T 2jre_A           92 AGNPVRLLLIRRL  104 (108)
T ss_dssp             HCSEEEEEEEECC
T ss_pred             CCCeEEEEEEeCC
Confidence            8899999998765

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.90  E-value=5.6e-09  Score=90.92  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=62.3

Q ss_pred             eeEEeccCCCCccceeeccC--c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCC-EEEEEEEeC
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG--Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGS-VLTLTLIPT  507 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G--v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~-tVtLtVip~  507 (530)
                      ++|.|.++. +.+||.+.+.  . |..|.++++|+++||+.||+|++|||+++.+++.+++..+++..++ .++|+|.+.
T Consensus        25 r~v~l~k~~-~~~G~~l~~~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~  103 (109)
T 2vsv_A           25 RSIRFTAEE-GDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSL  103 (109)
T ss_dssp             EEEEECCGG-GCCCEEEESSSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESC
T ss_pred             EEEEEEeCC-CceeEEEeCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEEC
Confidence            455566643 4589887643  3 8899999999999999999999999999999988899999987665 499999876


Q ss_pred             c
Q psy9257         508 S  508 (530)
Q Consensus       508 ~  508 (530)
                      .
T Consensus       104 ~  104 (109)
T 2vsv_A          104 L  104 (109)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.42  E-value=1.6e-10  Score=100.62  Aligned_cols=81  Identities=26%  Similarity=0.442  Sum_probs=65.5

Q ss_pred             cccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhh-cCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNN  420 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAak-AGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~  420 (530)
                      ..++.+.+.+....+|||++..+   ..|++|..|.++|+|++ +||+.||+|++|||+.+.+.+..++..+++.. +..
T Consensus        26 ~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~  104 (112)
T 2lob_A           26 QGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGE  104 (112)
Confidence            34567777777777899999864   25799999999999999 89999999999999999887777788888654 344


Q ss_pred             EEEEEe
Q psy9257         421 IRVVIR  426 (530)
Q Consensus       421 VtLtVr  426 (530)
                      +.|+|+
T Consensus       105 v~l~V~  110 (112)
T 2lob_A          105 IEFEVV  110 (112)
Confidence            777654

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.89  E-value=5.6e-10  Score=108.19  Aligned_cols=89  Identities=24%  Similarity=0.305  Sum_probs=71.5

Q ss_pred             cceEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE-EE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI-RV  423 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V-tL  423 (530)
                      .+.|.+.+.. ++|||.+....  .|++|..|.+|++|+++||+.||+|++|||+.|.+++..++..+++.. +..| .|
T Consensus        10 ~r~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l   87 (216)
T 2krg_A           10 PRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLL   87 (216)
T ss_dssp             CEEEEEECCS-SSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEE
T ss_pred             eEEEEEEeCC-CCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEE
Confidence            3456666654 45999998654  389999999999999999999999999999999977777788888765 7788 88


Q ss_pred             EEecCCcee--eEEec
Q psy9257         424 VIRDRPLER--TVTLH  437 (530)
Q Consensus       424 tVrR~~~e~--tVtL~  437 (530)
                      +|.|+++.+  ++.+.
T Consensus        88 ~V~R~g~~~~~~v~v~  103 (216)
T 2krg_A           88 VVDRETDEFFKKCRVI  103 (216)
T ss_dssp             ECCHHHHHHHHHHTCC
T ss_pred             EEEECCEEEEEEEEEE
Confidence            888876655  44443

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.89  E-value=6.3e-09  Score=86.49  Aligned_cols=74  Identities=16%  Similarity=0.363  Sum_probs=62.7

Q ss_pred             eeeEEeccCCCCccceeeccC--------------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG--------------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G--------------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      +++|++.++.  .|||.+.+|              . |..|.++++|++ ||+.||+|++|||+++.++++.++...+++
T Consensus         4 ~~~v~l~~~~--~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (95)
T 1mfg_A            4 EIRVRVEKDP--ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT   80 (95)
T ss_dssp             EEEEEEECSS--SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHH
T ss_pred             EEEEEECCCC--CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhc
Confidence            3455555554  589998742              2 889999999999 999999999999999999988889888888


Q ss_pred             CCCEEEEEEEeC
Q psy9257         496 GGSVLTLTLIPT  507 (530)
Q Consensus       496 sG~tVtLtVip~  507 (530)
                      .++.+.|+|.|.
T Consensus        81 ~~~~v~l~v~R~   92 (95)
T 1mfg_A           81 FQNTVELIIVRE   92 (95)
T ss_dssp             CCSEEEEEEEEE
T ss_pred             CCCeEEEEEEeC
Confidence            899999999875

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.89  E-value=3.1e-09  Score=89.88  Aligned_cols=78  Identities=22%  Similarity=0.357  Sum_probs=64.9

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ++++|+|..  ...|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.++.+.++...+++.++.+.|
T Consensus         5 ~~~~v~l~~--~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   82 (103)
T 1wf7_A            5 SSGSVSLVG--PAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM   82 (103)
T ss_dssp             CCEEEEEES--SSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEE
T ss_pred             CEEEEEEeC--CCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            445556652  24589998754       277889999999999999999999999999999888888888888999999


Q ss_pred             EEEeCcc
Q psy9257         503 TLIPTSM  509 (530)
Q Consensus       503 tVip~~~  509 (530)
                      +|.|...
T Consensus        83 ~v~R~g~   89 (103)
T 1wf7_A           83 TLQRASA   89 (103)
T ss_dssp             EECCCSC
T ss_pred             EEEeCCC
Confidence            9988754

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.89  E-value=3.5e-09  Score=91.30  Aligned_cols=83  Identities=25%  Similarity=0.468  Sum_probs=69.4

Q ss_pred             eeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      .+++.+.++....|||.+..     |. |..|.++|+|+++||+.||+|++|||+++.++..+++...+++.|+.+.|+|
T Consensus        14 p~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   93 (114)
T 2edz_A           14 PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV   93 (114)
T ss_dssp             CEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence            45666767666778887752     33 8899999999999999999999999999999888899999988899999999


Q ss_pred             EeCcchhhh
Q psy9257         505 IPTSMYQHM  513 (530)
Q Consensus       505 ip~~~~e~m  513 (530)
                      .|......+
T Consensus        94 ~R~~~~~~~  102 (114)
T 2edz_A           94 LDGDSYEKA  102 (114)
T ss_dssp             ECHHHHHHH
T ss_pred             EECCcceeh
Confidence            987655443

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.89  E-value=7.8e-09  Score=90.53  Aligned_cols=77  Identities=18%  Similarity=0.359  Sum_probs=64.7

Q ss_pred             eeEEeccCCCCccceeeccC-------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ++|.|.++. ..|||.+.++       . |..|.++++|+++| |+.||+|++|||++|.++++.++...+++.++.+.|
T Consensus        27 ~~v~l~k~~-~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l  105 (124)
T 2daz_A           27 HIIELEKDK-NGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKL  105 (124)
T ss_dssp             EEEEEECCS-SCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEE
T ss_pred             EEEEEEeCC-CccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            445555553 3488888643       2 88999999999999 999999999999999999999999999888889999


Q ss_pred             EEEeCcc
Q psy9257         503 TLIPTSM  509 (530)
Q Consensus       503 tVip~~~  509 (530)
                      +|.|...
T Consensus       106 ~v~R~~~  112 (124)
T 2daz_A          106 VFIRNED  112 (124)
T ss_dssp             EEEECTT
T ss_pred             EEEeCCC
Confidence            9988753

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.89  E-value=5.6e-09  Score=90.71  Aligned_cols=68  Identities=18%  Similarity=0.281  Sum_probs=60.4

Q ss_pred             CCccceeeccC-----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         441 SGHFGFHFNKG-----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       441 ~g~LGfs~~~G-----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      ...|||.+.++           . |..|.++++|+++| |+.||+|++|||+++.+++++++..+|+..++.++|+|.|.
T Consensus        29 ~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~  108 (117)
T 1ujd_A           29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             CCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESS
T ss_pred             CCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEEC
Confidence            45699998632           2 88999999999999 99999999999999999999999999998899999999876


Q ss_pred             c
Q psy9257         508 S  508 (530)
Q Consensus       508 ~  508 (530)
                      .
T Consensus       109 ~  109 (117)
T 1ujd_A          109 L  109 (117)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.88  E-value=4.1e-09  Score=89.30  Aligned_cols=76  Identities=24%  Similarity=0.451  Sum_probs=64.6

Q ss_pred             CceeeEEeccCCCCccceeecc-------------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK-------------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME  494 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~-------------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk  494 (530)
                      ...+++.|.+...+.|||.+..             +. |..|.++++|+++||+.||+|++|||+++.+++.+++..+|+
T Consensus        14 ~~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           14 SQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             SCCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            3456677777766778999874             32 889999999999999999999999999999998899999999


Q ss_pred             hCCCEEEEEE
Q psy9257         495 KGGSVLTLTL  504 (530)
Q Consensus       495 rsG~tVtLtV  504 (530)
                      +.++.++|+|
T Consensus        94 ~~~~~v~l~v  103 (104)
T 2z17_A           94 SSGNLLTIET  103 (104)
T ss_dssp             HTTTEEEEEC
T ss_pred             hCCCcEEEEE
Confidence            8777888775

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.88  E-value=8.8e-09  Score=88.13  Aligned_cols=78  Identities=26%  Similarity=0.290  Sum_probs=65.8

Q ss_pred             ceeeEEeccCCCCccceeeccC----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC-
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG-  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs-  496 (530)
                      ..++|.|.++. ..|||.+.+|          . |..|.++++|+++| |+.||+|++|||++|.+++.+++..+|+.. 
T Consensus        15 ~~~~v~l~k~~-~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (108)
T 2d92_A           15 EVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP   93 (108)
T ss_dssp             SCEEEEEEECS-SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred             ceEEEEEEECC-CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            44667777775 4599998642          2 88999999999999 999999999999999999999999999874 


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.++|+|.|..
T Consensus        94 ~~~v~l~v~R~~  105 (108)
T 2d92_A           94 PGLVHLGICSGP  105 (108)
T ss_dssp             SEEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            678999998754

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.88  E-value=9.4e-09  Score=94.30  Aligned_cols=83  Identities=20%  Similarity=0.326  Sum_probs=67.5

Q ss_pred             eEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         349 ELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      .+.+.+... .|||.+...        ..|++|..|.++|+|+++| |+.||+|++|||+.|.+++.+++..+++. .+.
T Consensus       103 ~v~l~~~~~-~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~  180 (196)
T 3gsl_A          103 EIKLIKGPK-GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYD  180 (196)
T ss_dssp             EEEEEEBTT-BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCE
T ss_pred             EEEEecCCC-CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCC
Confidence            344444433 689998763        2589999999999999999 99999999999999999888888999976 478


Q ss_pred             eEEEEEecCCceee
Q psy9257         420 NIRVVIRDRPLERT  433 (530)
Q Consensus       420 ~VtLtVrR~~~e~t  433 (530)
                      .+.|+|.|++....
T Consensus       181 ~v~l~v~R~~~~~~  194 (196)
T 3gsl_A          181 VVYLKVAKPSNAET  194 (196)
T ss_dssp             EEEEEEEEESCCCE
T ss_pred             eEEEEEeCCCCccc
Confidence            89999988765543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.88  E-value=4.5e-09  Score=86.78  Aligned_cols=75  Identities=15%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             eEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEE
Q psy9257         360 IGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVT  435 (530)
Q Consensus       360 LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVt  435 (530)
                      +|+.....+   .|+.|..+.++|+|+++||+.||+|++|||+.+.+|.+  +..++... .++.+.|+|.|+++.+++.
T Consensus         7 ~~~~p~~~~g~~~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d--~~~~~~~~~~g~~v~l~v~R~g~~~~~~   84 (87)
T 2i6v_A            7 VRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNV--MNTLFQSMNEMTEMSLTVERDGQQHDVY   84 (87)
T ss_dssp             EEEEEEEETTEEEEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHH--HHHHHHTGGGCSEEEEEEEETTEEEEEE
T ss_pred             cceEEEeeCCeEEEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            455444322   36778888888899999999999999999999998765  55666543 5788999999988777665


Q ss_pred             e
Q psy9257         436 L  436 (530)
Q Consensus       436 L  436 (530)
                      +
T Consensus        85 v   85 (87)
T 2i6v_A           85 I   85 (87)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.88  E-value=8.1e-09  Score=91.17  Aligned_cols=80  Identities=31%  Similarity=0.437  Sum_probs=68.4

Q ss_pred             CceeeEEeccCC-CCccceeecc---------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHH
Q psy9257         429 PLERTVTLHRDS-SGHFGFHFNK---------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELL  490 (530)
Q Consensus       429 ~~e~tVtL~kd~-~g~LGfs~~~---------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv  490 (530)
                      ...+.|.|.+.. .+.|||.+.+               |. |..|.++|+|+++| |+.||+|++|||++|.+++.+++.
T Consensus        28 ~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~  107 (128)
T 1nf3_C           28 ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVT  107 (128)
T ss_dssp             TTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHH
T ss_pred             CccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            345677787774 4669999862               33 88999999999999 899999999999999999999999


Q ss_pred             HHHHhCCCEEEEEEEeCc
Q psy9257         491 EAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       491 ~iLkrsG~tVtLtVip~~  508 (530)
                      .++++.++.++|+|.|..
T Consensus       108 ~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          108 DMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHTTTSEEEEEECCC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            999988888999998865

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.87  E-value=6.5e-09  Score=88.96  Aligned_cols=72  Identities=18%  Similarity=0.382  Sum_probs=61.5

Q ss_pred             cCCCCccceeeccC-----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         438 RDSSGHFGFHFNKG-----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       438 kd~~g~LGfs~~~G-----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ++....|||.+.+|           . |..|.++++|+++| |+.||+|++|||++|.+++..++...+++.++.++|+|
T Consensus         9 ~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v   88 (106)
T 4amh_A            9 PRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV   88 (106)
T ss_dssp             ---CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEE
T ss_pred             CCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEE
Confidence            34455688888743           2 88999999999999 99999999999999999999999999998899999999


Q ss_pred             EeCcc
Q psy9257         505 IPTSM  509 (530)
Q Consensus       505 ip~~~  509 (530)
                      .|...
T Consensus        89 ~R~~~   93 (106)
T 4amh_A           89 AKPGS   93 (106)
T ss_dssp             ECCSS
T ss_pred             EeCCC
Confidence            98753

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.87  E-value=5.5e-09  Score=88.23  Aligned_cols=78  Identities=23%  Similarity=0.271  Sum_probs=64.5

Q ss_pred             ceeeEEeccCCCCccceeecc--C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEe
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK--G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP  506 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~--G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip  506 (530)
                      +.+.+++.+... .|||.+..  + .|..|.++++|+++||+.||+|++|||+++.+++..++..+++..++.+.|+|.|
T Consensus        15 ~~~~v~l~~~~~-g~G~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R   93 (100)
T 1whd_A           15 EKLQITIRRGKD-GFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   93 (100)
T ss_dssp             EEEEEEEECCSS-SSSCBCCCSSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEE
T ss_pred             ceEEEEEECCCC-eeeEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            345566666553 48888753  3 3889999999999999999999999999999998889999999888889999987


Q ss_pred             Cc
Q psy9257         507 TS  508 (530)
Q Consensus       507 ~~  508 (530)
                      ..
T Consensus        94 ~~   95 (100)
T 1whd_A           94 VS   95 (100)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=6.4e-09  Score=86.59  Aligned_cols=76  Identities=24%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             eeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      +++|+|.+.  ..|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.+++..++...++..++.+.|+
T Consensus         9 ~~~v~l~~~--~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   86 (94)
T 2eeg_A            9 PHSVTLRGP--SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLS   86 (94)
T ss_dssp             CEEEEECCS--SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEE
T ss_pred             eEEEEEeCC--CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            345555333  4589998753       2888999999999999999999999999999998888888888888899999


Q ss_pred             EEeCc
Q psy9257         504 LIPTS  508 (530)
Q Consensus       504 Vip~~  508 (530)
                      |.|..
T Consensus        87 v~R~g   91 (94)
T 2eeg_A           87 VSSGP   91 (94)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            98764

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.87  E-value=4.7e-09  Score=90.92  Aligned_cols=79  Identities=23%  Similarity=0.329  Sum_probs=68.0

Q ss_pred             ceeeEEeccCCCCccceeeccC------------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      +.++++|.++....|||.+.+|            . |..|.++++|+ +||+.||+|++|||++|.++++.++..++++.
T Consensus        14 ~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~   92 (117)
T 2csj_A           14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   92 (117)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             eEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            3456778877767799998753            2 88999999997 89999999999999999999999999999988


Q ss_pred             CCEEEEEEEeCcc
Q psy9257         497 GSVLTLTLIPTSM  509 (530)
Q Consensus       497 G~tVtLtVip~~~  509 (530)
                      ++.+.|+|.|...
T Consensus        93 ~~~v~l~v~R~~~  105 (117)
T 2csj_A           93 GKIAAIVVKRPRK  105 (117)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEECCc
Confidence            9999999988653

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.87  E-value=4.5e-09  Score=90.17  Aligned_cols=79  Identities=20%  Similarity=0.311  Sum_probs=67.0

Q ss_pred             eeeEEeccCCCCccceeecc------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      .++|+|.+.. ..|||.+.+            |. |..|.++|+|+++| |+.||+|++|||+++.+++..++..++++.
T Consensus         5 ~~~v~l~k~~-~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   83 (113)
T 2g5m_B            5 LFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT   83 (113)
T ss_dssp             EEEEECCCCS-SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCC-CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            4566676655 458998876            22 88999999999999 999999999999999999989999999988


Q ss_pred             CCEEEEEEEeCcch
Q psy9257         497 GSVLTLTLIPTSMY  510 (530)
Q Consensus       497 G~tVtLtVip~~~~  510 (530)
                      ++.+.|+|.|....
T Consensus        84 g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           84 KGRVRFMIGRERPG   97 (113)
T ss_dssp             CSSCEEEEEECCCC
T ss_pred             CCeEEEEEEeCCCC
Confidence            99999999987643

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.86  E-value=8.1e-09  Score=96.45  Aligned_cols=75  Identities=21%  Similarity=0.370  Sum_probs=64.1

Q ss_pred             eeEEeccCCCCccceeecc------------C-cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         432 RTVTLHRDSSGHFGFHFNK------------G-QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~------------G-vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ++|+|.++.. .|||.+.+            | .|..|.++++|+++| |+.||+|++|||+.|.++++.++..+|+..+
T Consensus        82 ~~v~l~k~~~-glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g  160 (170)
T 3egg_C           82 FPVELEKDSE-GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK  160 (170)
T ss_dssp             EEEEEECBTT-BSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCC
T ss_pred             EEEEEEeCCC-eEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4455555554 48888866            1 288999999999999 9999999999999999999999999999999


Q ss_pred             CEEEEEEEeC
Q psy9257         498 SVLTLTLIPT  507 (530)
Q Consensus       498 ~tVtLtVip~  507 (530)
                      ..|+|+|.|.
T Consensus       161 ~~v~L~V~R~  170 (170)
T 3egg_C          161 GRVRFMIGRE  170 (170)
T ss_dssp             SEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            9999999874

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.86  E-value=1.6e-08  Score=86.35  Aligned_cols=78  Identities=17%  Similarity=0.400  Sum_probs=64.3

Q ss_pred             ceeeEEeccCCCCccceeecc---------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--  496 (530)
                      +.+++.+.+... .|||.+..         |. |..|.++++|+++| |+.||+|++|||+.+.+++.+++..+++..  
T Consensus        11 ~~~~~~l~~~~~-glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   89 (111)
T 2koj_A           11 KRLNIQLKKGTE-GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKM   89 (111)
T ss_dssp             EEEEEEEECBTT-BTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCC
T ss_pred             cEEEEEEEECCC-ccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            445556655543 48888862         23 88999999999999 999999999999999999888999999864  


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.+.|+|.|..
T Consensus        90 g~~v~l~v~R~~  101 (111)
T 2koj_A           90 EGTVSLLVFRQE  101 (111)
T ss_dssp             SSEEEEEEEECC
T ss_pred             CCeEEEEEEeCC
Confidence            889999998865

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.86  E-value=7.5e-09  Score=87.82  Aligned_cols=79  Identities=24%  Similarity=0.315  Sum_probs=66.4

Q ss_pred             ceeeEEeccCCCCccceeecc------------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK------------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~------------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      +.++|+|.++....|||.+.+            |. |..|.++++|+ +||+.||+|++|||+++.++.+.+....+++.
T Consensus         7 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (107)
T 2h2b_A            7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKS   85 (107)
T ss_dssp             EEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             eeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCC
Confidence            356777888776779999862            33 88999999999 99999999999999999999877777777778


Q ss_pred             CCEEEEEEEeCcc
Q psy9257         497 GSVLTLTLIPTSM  509 (530)
Q Consensus       497 G~tVtLtVip~~~  509 (530)
                      ++.+.|+|.|...
T Consensus        86 g~~v~l~v~R~~~   98 (107)
T 2h2b_A           86 GKNAKITIRRKKG   98 (107)
T ss_dssp             CSEEEEEEEEESC
T ss_pred             CCEEEEEEEECCC
Confidence            9999999987653

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.86  E-value=1.3e-08  Score=87.98  Aligned_cols=78  Identities=26%  Similarity=0.423  Sum_probs=66.9

Q ss_pred             ceeeEEeccCCCCccceeeccC-----c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      +.++|+|.+...+ |||.+..+     . |..|.++++|+++| |+.||+|++|||+.+.++.+.++...+++.++.+.|
T Consensus        14 ~~~~v~l~k~~~g-lG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l   92 (119)
T 1tp5_A           14 EPRRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI   92 (119)
T ss_dssp             SCEEEEEECTTSC-CCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEE
T ss_pred             ccEEEEEEECCCC-ccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            4567777776655 99998743     3 88999999999999 999999999999999999888888888888999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.+..
T Consensus        93 ~v~r~~   98 (119)
T 1tp5_A           93 IAQYKP   98 (119)
T ss_dssp             EEEECH
T ss_pred             EEEECC
Confidence            998764

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.85  E-value=1e-08  Score=112.47  Aligned_cols=80  Identities=24%  Similarity=0.238  Sum_probs=67.8

Q ss_pred             CCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEE
Q psy9257         357 SGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVT  435 (530)
Q Consensus       357 ~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVt  435 (530)
                      ..+||+++...+.|++|..|.+||||++|||+.||+|++|||+.|. ..+  +..+++. ..|+.|.|+|.|+++.++++
T Consensus       484 ~~~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~  560 (597)
T 4fgm_A          484 RVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-EQS--VKRILERYIPGDTVTIHAFRRDELMTLE  560 (597)
T ss_dssp             SCCCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-TTT--HHHHHTTCCTTCEEEEEEEETTEEEEEE
T ss_pred             ccccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-HHH--HHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            4579999987778999999999999999999999999999999994 433  5666654 56899999999999888777


Q ss_pred             eccC
Q psy9257         436 LHRD  439 (530)
Q Consensus       436 L~kd  439 (530)
                      +...
T Consensus       561 v~l~  564 (597)
T 4fgm_A          561 LTWQ  564 (597)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            7554

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.85  E-value=6.9e-09  Score=88.52  Aligned_cols=78  Identities=24%  Similarity=0.389  Sum_probs=66.9

Q ss_pred             ceeeEEeccCCCCccceeeccC-----c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      +.+.|+|.+.. ..|||.+..+     . |..|.++++|+++| |+.||+|++|||+++.++.+.++..++++.++.+.|
T Consensus        15 ~~~~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l   93 (113)
T 1um7_A           15 EPRKIILHKGS-TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI   93 (113)
T ss_dssp             SEEEEEEECCS-SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEE
T ss_pred             ceEEEEEEECC-CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence            55677777765 4499998643     2 88999999999999 999999999999999999888888888888999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.+..
T Consensus        94 ~v~r~~   99 (113)
T 1um7_A           94 VAQYRP   99 (113)
T ss_dssp             EEECCH
T ss_pred             EEEECc
Confidence            998764

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.85  E-value=1e-08  Score=88.39  Aligned_cols=79  Identities=16%  Similarity=0.351  Sum_probs=66.4

Q ss_pred             CceeeEEeccCCCCccceeeccC--------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG--------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--  496 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G--------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--  496 (530)
                      .+.+.+++.++  ..|||.+.+|        . |..|.++++|+++| |+.||+|++|||+++.+++++++..+|+..  
T Consensus        14 ~~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~   91 (109)
T 1wi4_A           14 PAFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKL   91 (109)
T ss_dssp             TTEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCC
T ss_pred             CcEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcccc
Confidence            34566777775  4599998742        2 88999999999999 999999999999999999999999999854  


Q ss_pred             --CCEEEEEEEeCcc
Q psy9257         497 --GSVLTLTLIPTSM  509 (530)
Q Consensus       497 --G~tVtLtVip~~~  509 (530)
                        +..++|++.|...
T Consensus        92 r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           92 RSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSSSCEEEEEECCCC
T ss_pred             CCCceEEEEEEeCCC
Confidence              5789999988753

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.84  E-value=1.4e-08  Score=89.62  Aligned_cols=78  Identities=28%  Similarity=0.461  Sum_probs=66.1

Q ss_pred             eeeEEeccCCCCccceeecc---------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHH
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK---------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAM  493 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~---------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iL  493 (530)
                      .+++++.+...+.|||.+.+               |. |..|.++|+|+++| |+.||+|++|||++|.+++.+++..+|
T Consensus        25 p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  104 (123)
T 2iwq_A           25 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI  104 (123)
T ss_dssp             CEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35666666666678888742               33 88999999999999 999999999999999998889999999


Q ss_pred             HhCCCEEEEEEEeCc
Q psy9257         494 EKGGSVLTLTLIPTS  508 (530)
Q Consensus       494 krsG~tVtLtVip~~  508 (530)
                      +..++.++|+|.+..
T Consensus       105 ~~~~~~v~l~v~r~~  119 (123)
T 2iwq_A          105 RKAGNPVVFMVQSII  119 (123)
T ss_dssp             HHCCSSEEEEEECCC
T ss_pred             HcCCCeEEEEEEECC
Confidence            988889999998754

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=7e-09  Score=86.45  Aligned_cols=78  Identities=26%  Similarity=0.425  Sum_probs=66.4

Q ss_pred             ceeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ..+.|.|.|.....|||.+..   +. |..|.++++|+++| |+.||+|++|||+++ +.+.+++..+|+..++.+.|+|
T Consensus         6 ~~r~v~l~k~~~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v   84 (91)
T 2e7k_A            6 SGRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKI   84 (91)
T ss_dssp             CSCBCCBCCCTTCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEE
T ss_pred             CcEEEEEEECCCCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEE
Confidence            345677777777779999863   33 88999999999987 999999999999999 8888999999998888999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .+..
T Consensus        85 ~~~~   88 (91)
T 2e7k_A           85 LSGP   88 (91)
T ss_dssp             ECCS
T ss_pred             EECC
Confidence            8753

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.84  E-value=7e-09  Score=91.12  Aligned_cols=80  Identities=29%  Similarity=0.515  Sum_probs=68.6

Q ss_pred             ceeeEEeccCCCCccceeecc-----------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      +.++|.|.+.....|||.+.+           |. |..|.++++|+++| |+.||+|++|||+++.+++.+++..+|+..
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   94 (129)
T 2dmz_A           15 ETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA   94 (129)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHC
T ss_pred             cEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            345677766566679999864           22 88999999999999 999999999999999999889999999888


Q ss_pred             CCEEEEEEEeCcc
Q psy9257         497 GSVLTLTLIPTSM  509 (530)
Q Consensus       497 G~tVtLtVip~~~  509 (530)
                      ++.+.|+|.|...
T Consensus        95 ~~~v~l~v~R~~~  107 (129)
T 2dmz_A           95 GQVVHLTLVRRKT  107 (129)
T ss_dssp             CSSEEEEEEEESS
T ss_pred             CCeEEEEEEeCCc
Confidence            8999999988653

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.84  E-value=1.4e-08  Score=85.90  Aligned_cols=78  Identities=22%  Similarity=0.362  Sum_probs=64.7

Q ss_pred             ceeeEEeccCCCCccceeecc--------Cc-EEEEccCCHHHH-cCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK--------GQ-IVSLVKDSSAAR-NGLLVNHNILEVNGANVVGLKDKELLEAMEK--GG  497 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~--------Gv-V~sVv~gSpAar-AGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG  497 (530)
                      +.+++.+.+.....|||.+..        +. |..|.++++|++ +||+.||+|++|||+++.+++.+++..+|+.  .+
T Consensus         9 ~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g   88 (101)
T 2yt7_A            9 NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQ   88 (101)
T ss_dssp             CCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTS
T ss_pred             ceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            445666766655678998852        23 889999999999 5699999999999999988888999999986  78


Q ss_pred             CEEEEEEEeC
Q psy9257         498 SVLTLTLIPT  507 (530)
Q Consensus       498 ~tVtLtVip~  507 (530)
                      +.++|+|.|.
T Consensus        89 ~~v~l~v~R~   98 (101)
T 2yt7_A           89 TSVTLSIVHC   98 (101)
T ss_dssp             SEEEEEECCC
T ss_pred             CeEEEEEEeC
Confidence            9999999764

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.84  E-value=1.3e-08  Score=89.95  Aligned_cols=82  Identities=21%  Similarity=0.267  Sum_probs=65.3

Q ss_pred             CceeeEEeccCCCCccceeeccCc----EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCEEEE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG--GSVLTL  502 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~Gv----V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~tVtL  502 (530)
                      ++.++|+|.|+.. .|||.+.++.    |..|..  +++.+||+.||+|++|||++|.++++++++.+|+..  |..++|
T Consensus        11 ~~~~~V~L~Kg~~-G~GFsI~~~~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L   87 (113)
T 3soe_A           11 GLLVTIPLIKGPK-GFGFAIADSPTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPL   87 (113)
T ss_dssp             CEEEEEEEECBTT-BSSEEEEEETTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEEEEECCC-cccEEEeCCCCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            3456777777755 4999997532    677776  578889999999999999999999999999999964  789999


Q ss_pred             EEEeCcchhhh
Q psy9257         503 TLIPTSMYQHM  513 (530)
Q Consensus       503 tVip~~~~e~m  513 (530)
                      +|.|.....-+
T Consensus        88 ~V~R~g~~~p~   98 (113)
T 3soe_A           88 LILRGGPPSPT   98 (113)
T ss_dssp             EEEESSCC---
T ss_pred             EEEECCccCcc
Confidence            99998754433

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.83  E-value=3.5e-09  Score=88.18  Aligned_cols=74  Identities=19%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             eccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         436 LHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       436 L~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      +.......|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.+++.+++..+++..++.+.|+|.|..
T Consensus        10 ~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g   89 (94)
T 1vb7_A           10 VDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS   89 (94)
T ss_dssp             EEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCC
T ss_pred             EEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence            3333445689988643       277899999999999999999999999999999888999999977789999998875


Q ss_pred             c
Q psy9257         509 M  509 (530)
Q Consensus       509 ~  509 (530)
                      .
T Consensus        90 ~   90 (94)
T 1vb7_A           90 G   90 (94)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.83  E-value=2.5e-08  Score=82.32  Aligned_cols=77  Identities=22%  Similarity=0.445  Sum_probs=64.2

Q ss_pred             eeeEEeccCCCCccceeeccC----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS  498 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~  498 (530)
                      .+++++.+... .|||.+..+          . |..|.++++|+++| |+.||+|++|||+++.++...++..+++..++
T Consensus         5 ~~~v~l~~~~~-~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   83 (97)
T 2iwn_A            5 TFDVELTKNVQ-GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ   83 (97)
T ss_dssp             EEEEEEECBTT-BSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred             EEEEEEecCCC-CCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            34556655544 489988643          2 88999999999999 99999999999999999988888888888899


Q ss_pred             EEEEEEEeCc
Q psy9257         499 VLTLTLIPTS  508 (530)
Q Consensus       499 tVtLtVip~~  508 (530)
                      .+.|+|.|..
T Consensus        84 ~v~l~v~r~g   93 (97)
T 2iwn_A           84 TVLLTLMRRG   93 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEeCC
Confidence            9999998754

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.83  E-value=1.4e-08  Score=96.75  Aligned_cols=93  Identities=22%  Similarity=0.351  Sum_probs=74.1

Q ss_pred             CCCeeEEEEEec------CCcEEEEEeccCCHhhhcCCCC-CCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         356 ASGLIGLRVCAI------NEGVFVCLVERGSPASLVGLRF-GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       356 s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAGLq~-GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      ..++||+.+...      ..|++|..|.++|+|+++||+. ||+|++|||+ +.++.+  +..+++...++.+.|+|.|+
T Consensus        93 ~~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~--l~~~l~~~~g~~v~l~v~r~  169 (209)
T 3rle_A           93 GQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESED--LFSLIETHEAKPLKLYVYNT  169 (209)
T ss_dssp             SSSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSC--HHHHHHHTTTSCEEEEEEET
T ss_pred             ccCccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHH--HHHHHHhCCCCeEEEEEEEC
Confidence            356789988742      2689999999999999999999 9999999998 888776  67777777788999999775


Q ss_pred             C--ceeeEEeccC----CCCccceeeccC
Q psy9257         429 P--LERTVTLHRD----SSGHFGFHFNKG  451 (530)
Q Consensus       429 ~--~e~tVtL~kd----~~g~LGfs~~~G  451 (530)
                      +  +.+++++..+    ..+.||+.+..|
T Consensus       170 ~~~~~~~v~l~p~~~~~g~g~lG~~~~~g  198 (209)
T 3rle_A          170 DTDNCREVIITPNSAWGGEGSLGCGIGYG  198 (209)
T ss_dssp             TTTEEEEEEECCCTTSSSSSSSCEEEECS
T ss_pred             CceEEEEEEEEecCCCCCceeeeEEecCc
Confidence            4  4467777654    345688877544

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.82  E-value=8.5e-10  Score=92.79  Aligned_cols=66  Identities=21%  Similarity=0.376  Sum_probs=56.1

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEEec
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVtL~  437 (530)
                      .|++|..|.++|||++ ||+.||+|++|||+.+.++.+  +..+++.. .++.+.|+|.|+++.+++++.
T Consensus         1 ~Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   67 (91)
T 2kjp_A            1 NGIYASSVVENMPAKG-KIEVGDKIISADGKNYQSAEK--LIDYISSKKAGDKVTLKIEREEKEKRVTLT   67 (91)
T ss_dssp             CCSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSHHH--HHHHHSSCCSSCEECEEEESSSCEECCCEE
T ss_pred             CceEEEEECCCChHHH-cCCCCCEEEEECCEECCCHHH--HHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence            4788999999999999 999999999999999988644  67777665 588999999998887766654

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.82  E-value=5.7e-09  Score=92.31  Aligned_cols=78  Identities=22%  Similarity=0.472  Sum_probs=65.9

Q ss_pred             eeeEEeccCCCCccceeeccC----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--  496 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--  496 (530)
                      .+++.|.+.....|||.+.++          . |..|.++++|+++| |+.||+|++|||+.+.+++++++..+|++.  
T Consensus        26 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  105 (127)
T 1wg6_A           26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhc
Confidence            344556655566799998642          2 88999999999999 999999999999999999999999999865  


Q ss_pred             -----CCEEEEEEEeCc
Q psy9257         497 -----GSVLTLTLIPTS  508 (530)
Q Consensus       497 -----G~tVtLtVip~~  508 (530)
                           ++.|+|+|.|..
T Consensus       106 ~~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A          106 MEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHHTCEEEEEEEECS
T ss_pred             cccCCCCEEEEEEEeCC
Confidence                 789999998865

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=4.1e-09  Score=88.50  Aligned_cols=78  Identities=29%  Similarity=0.530  Sum_probs=65.0

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.+++++.++..+ |||.+..+      . |..|.++++|+++| |+.||+|++|||+++.+++..++..++++.++.+.
T Consensus        11 ~~~~v~l~~~~~g-~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   89 (103)
T 1wfv_A           11 DYFTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR   89 (103)
T ss_dssp             CCEECCEECCTTS-SSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEEC
T ss_pred             eEEEEEEecCCCc-CCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            3455666666544 89998632      2 77889999999999 99999999999999999988888888888889999


Q ss_pred             EEEEeCc
Q psy9257         502 LTLIPTS  508 (530)
Q Consensus       502 LtVip~~  508 (530)
                      |+|.|..
T Consensus        90 l~v~R~~   96 (103)
T 1wfv_A           90 LLLKRGT   96 (103)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998764

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.82  E-value=1e-08  Score=88.19  Aligned_cols=80  Identities=23%  Similarity=0.360  Sum_probs=66.3

Q ss_pred             CceeeEEeccCCCCccceeecc-------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK-------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSV  499 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~-------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~t  499 (530)
                      ++.++++|.+... .|||.+..       |. |..|.++++|+++| |+.||+|++|||+.|.++..+++..+++..++.
T Consensus        16 ~~~~~v~l~~~~~-glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   94 (116)
T 2dm8_A           16 GQEMIIEISKGRS-GLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK   94 (116)
T ss_dssp             TSCEEEEEECCSS-CCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEEEECCC-cccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3446666766543 48998863       33 77899999999999 999999999999999999888999999988899


Q ss_pred             EEEEEEeCcc
Q psy9257         500 LTLTLIPTSM  509 (530)
Q Consensus       500 VtLtVip~~~  509 (530)
                      +.|+|.|...
T Consensus        95 v~l~v~R~~~  104 (116)
T 2dm8_A           95 VRLVVYRDEA  104 (116)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEeCCc
Confidence            9999987653

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.81  E-value=3e-08  Score=81.44  Aligned_cols=70  Identities=17%  Similarity=0.324  Sum_probs=59.8

Q ss_pred             CCCCccceeeccCc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         439 DSSGHFGFHFNKGQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       439 d~~g~LGfs~~~Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      +....+||.+..|. |..|.++++|+++| |+.||+|++|||+++.+++.+++..+++..++.+.|+|.|..
T Consensus        12 ~~~~~~g~~~~~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g   83 (92)
T 3cyy_A           12 AKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE   83 (92)
T ss_dssp             STTSCCCEEEEEEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC--
T ss_pred             CCCCCCCEEEeCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCC
Confidence            34456898876665 88999999999999 999999999999999988888999999887789999998765

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.81  E-value=2.8e-08  Score=79.25  Aligned_cols=72  Identities=17%  Similarity=0.324  Sum_probs=61.1

Q ss_pred             eccCCCCccceeeccCc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         436 LHRDSSGHFGFHFNKGQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       436 L~kd~~g~LGfs~~~Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      +.+.....+||.+..|. |..|.++++|+++| |+.||+|++|||+++.+++.+++..+++..++.+.|+|.|.
T Consensus         7 ~~~~~~~~~g~~~~~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A            7 VKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             ECCSTTCCCCEEEEEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             EECCCCCCCCEEEeCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            44455567898876665 88999999999999 99999999999999998888899999987777899998764

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=3.5e-09  Score=93.13  Aligned_cols=56  Identities=21%  Similarity=0.473  Sum_probs=52.8

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      |..|.++++|+++||+.||+|++|||++|.+++.+++..+|++.++.++|+|.|..
T Consensus        65 V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~  120 (126)
T 2yuy_A           65 VKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKD  120 (126)
T ss_dssp             BCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCC
T ss_pred             EEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            88899999999999999999999999999999999999999988999999998765

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.81  E-value=1.1e-08  Score=87.77  Aligned_cols=80  Identities=25%  Similarity=0.387  Sum_probs=67.4

Q ss_pred             cCCceeeEEeccCCCCccceeecc------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCE
Q psy9257         427 DRPLERTVTLHRDSSGHFGFHFNK------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSV  499 (530)
Q Consensus       427 R~~~e~tVtL~kd~~g~LGfs~~~------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~t  499 (530)
                      |..+++++.+.+.....|||.+..      |. |..|.++++|+++||+.||+|++|||+++.++.+.++..+++.. +.
T Consensus        12 ~~~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~   90 (114)
T 1x5n_A           12 RENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS   90 (114)
T ss_dssp             CCCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS
T ss_pred             CCCCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce
Confidence            455677888877667779999973      33 88999999999999999999999999999999887888888765 57


Q ss_pred             EEEEEEeC
Q psy9257         500 LTLTLIPT  507 (530)
Q Consensus       500 VtLtVip~  507 (530)
                      +.|+|.|.
T Consensus        91 v~l~v~r~   98 (114)
T 1x5n_A           91 LTISIVAA   98 (114)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEcC
Confidence            89998776

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.81  E-value=2.2e-08  Score=85.45  Aligned_cols=65  Identities=15%  Similarity=0.274  Sum_probs=53.5

Q ss_pred             cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEe
Q psy9257         370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTL  436 (530)
Q Consensus       370 GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL  436 (530)
                      |+.|..+.++|+|+++||+.||+|++|||+.+.+|.+  +..++.. ..++.+.|+|.|+++.+++.+
T Consensus        38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d--~~~~~~~~~~g~~v~l~v~R~g~~~~~~v  103 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNV--MNTLFQSMNEMTEMSLTVERDGQQHDVYI  103 (105)
T ss_dssp             EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTH--HHHHHHHHTTCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCeEEEEEEECCEEEEEEE
Confidence            5667777788888999999999999999999999977  4455553 567899999999887776654

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.81  E-value=1.6e-08  Score=104.68  Aligned_cols=85  Identities=27%  Similarity=0.441  Sum_probs=73.1

Q ss_pred             cCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCc-
Q psy9257         355 DASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL-  430 (530)
Q Consensus       355 ~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~-  430 (530)
                      +..++||+.+...   +.+++|..|.++|||+++||+.||+|++|||+.+.++...++..+++...+..|.|+|.|.+. 
T Consensus        82 g~~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~  161 (388)
T 1fc6_A           82 GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP  161 (388)
T ss_dssp             SSCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE
T ss_pred             CceEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCC
Confidence            4556789998865   578999999999999999999999999999999999976678888877778999999999876 


Q ss_pred             --eeeEEeccC
Q psy9257         431 --ERTVTLHRD  439 (530)
Q Consensus       431 --e~tVtL~kd  439 (530)
                        .++++|.++
T Consensus       162 ~~~~~~~l~r~  172 (388)
T 1fc6_A          162 SNTRTLQLTRQ  172 (388)
T ss_dssp             EEEEEEEEECB
T ss_pred             cceEEEEEEEc
Confidence              677777654

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.81  E-value=1.3e-08  Score=87.09  Aligned_cols=77  Identities=25%  Similarity=0.419  Sum_probs=64.5

Q ss_pred             eeeEEeccCCCCccceeeccC--------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh-----C
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG--------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK-----G  496 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G--------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr-----s  496 (530)
                      .+.|.|.+.. ..|||.+.+|        .|..|.++++|+++| |+.||+|++|||+++.+++++++..+|++     .
T Consensus         7 ~~~v~l~k~~-~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~   85 (103)
T 1ufx_A            7 GTLVRVKKSA-ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             SEEEEEECCS-SSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             eEEEEEEcCC-CcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCC
Confidence            4556665554 4599999743        489999999999999 99999999999999999999999999986     6


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.+.++|.|..
T Consensus        86 ~~~i~l~v~r~~   97 (103)
T 1ufx_A           86 RDYIDFLVTEFN   97 (103)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCeEEEEEEEcc
Confidence            788999987753

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=7.8e-09  Score=87.30  Aligned_cols=76  Identities=17%  Similarity=0.314  Sum_probs=61.5

Q ss_pred             eEEeccCCCCccceeeccC-------cEEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         433 TVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ++++.......|||.+.+|       .|..|.++++|+++ ||+.||+|++|||+++.++ ..++...++..++.+.|+|
T Consensus        12 ~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v   90 (100)
T 2edp_A           12 YVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIV   90 (100)
T ss_dssp             EEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEE
T ss_pred             EEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEE
Confidence            3334333335689998643       27789999999999 9999999999999999997 6788888888888999999


Q ss_pred             EeCcc
Q psy9257         505 IPTSM  509 (530)
Q Consensus       505 ip~~~  509 (530)
                      .|...
T Consensus        91 ~R~~~   95 (100)
T 2edp_A           91 RRRNS   95 (100)
T ss_dssp             EECCC
T ss_pred             EeCCC
Confidence            88753

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.80  E-value=5.5e-09  Score=104.28  Aligned_cols=82  Identities=26%  Similarity=0.416  Sum_probs=71.9

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHH-cCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAAR-NGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAar-AGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.++|+|.|...+.|||.+.+|      . |..|.++++|++ +||+.||+|++|||++|.++++++++.+|+..++.|+
T Consensus        77 ~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~  156 (263)
T 1z87_A           77 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV  156 (263)
T ss_dssp             SSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCC
T ss_pred             ccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEE
Confidence            4677888888767799999764      2 889999999999 6999999999999999999999999999999899999


Q ss_pred             EEEEeCcchh
Q psy9257         502 LTLIPTSMYQ  511 (530)
Q Consensus       502 LtVip~~~~e  511 (530)
                      |+|.+.....
T Consensus       157 L~V~R~~~~~  166 (263)
T 1z87_A          157 LEVKYMKEVS  166 (263)
T ss_dssp             EEEECCSSSS
T ss_pred             EEEEeCcccc
Confidence            9999865443

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.80  E-value=6.7e-09  Score=85.51  Aligned_cols=67  Identities=21%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEecc
Q psy9257         370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR  438 (530)
Q Consensus       370 GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~k  438 (530)
                      .++|..|.++|+|+++||+.||+|++|||+.+.++.+  +...+....++.+.|+|.|+++.+++.+..
T Consensus         5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~--~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~   71 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVT--FVMLVRDNPGXSLALEIERQGSPLSLTLIP   71 (91)
T ss_dssp             -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCHHH--HHHHHHHCTTCCEEEEEEETTEEEEEEECC
T ss_pred             CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCHHH--HHHHHhcCCCCeEEEEEEECCeEEEEEEEE
Confidence            3578899999999999999999999999999998754  666776667789999999988887777653

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.79  E-value=2.1e-08  Score=82.22  Aligned_cols=77  Identities=30%  Similarity=0.401  Sum_probs=60.0

Q ss_pred             ceeeEEeccCCCCccceeecc-----CcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----GQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtL  502 (530)
                      +.++++|.++.. .|||.+..     |.+....++++|+ +||+.||+|++|||+++.+++.+++...+++  .++.+.|
T Consensus         3 ~~~~v~l~k~~~-g~G~~~~~~~~~~~~~v~~v~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   80 (88)
T 3bpu_A            3 ELITVHIVKGPM-GFGFTIADSPGGGGQRVKQIVDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTL   80 (88)
T ss_dssp             EEEEEEEECBTT-BSSCEEEECTTSSSEEEEECCC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEE
T ss_pred             cEEEEEEEcCCC-ceeEEEEecCCCCcEEEEEecCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEE
Confidence            346677777654 48999862     3444445999999 9999999999999999999988889988885  6789999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.|..
T Consensus        81 ~v~R~g   86 (88)
T 3bpu_A           81 LVQRQT   86 (88)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            998753

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.79  E-value=1e-08  Score=86.64  Aligned_cols=75  Identities=16%  Similarity=0.354  Sum_probs=63.2

Q ss_pred             eeeEEeccCCCCccceeecc--------------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK--------------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~--------------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      .+++++.++.  .|||.+.+              |. |..|.++++|++ ||+.||+|++|||+++.++++.++...+++
T Consensus        12 ~~~v~l~~~~--~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~   88 (103)
T 1n7t_A           12 EIRVRVEKDP--ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT   88 (103)
T ss_dssp             CEEEEEECSS--CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEccCC--CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhc
Confidence            4455666654  58998865              22 778999999999 999999999999999999998899999998


Q ss_pred             CCCEEEEEEEeCc
Q psy9257         496 GGSVLTLTLIPTS  508 (530)
Q Consensus       496 sG~tVtLtVip~~  508 (530)
                      .++.+.|+|.|..
T Consensus        89 ~g~~v~l~v~R~~  101 (103)
T 1n7t_A           89 FQNTVELIIVREV  101 (103)
T ss_dssp             CCSEEEEEEECCC
T ss_pred             CCCeEEEEEEecC
Confidence            8999999998753

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.79  E-value=2e-08  Score=94.37  Aligned_cols=79  Identities=20%  Similarity=0.355  Sum_probs=68.6

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ..+.|+|.+...+.|||.+.+|       .|..|.++|+|+++||+.||+|++|||++|.+++.+++..+++. ++.+.|
T Consensus        84 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l  162 (192)
T 3k1r_A           84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSI  162 (192)
T ss_dssp             SCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEE
T ss_pred             ceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEE
Confidence            4456778777667799999644       28899999999999999999999999999999988999998888 899999


Q ss_pred             EEEeCcc
Q psy9257         503 TLIPTSM  509 (530)
Q Consensus       503 tVip~~~  509 (530)
                      +|.+...
T Consensus       163 ~v~r~g~  169 (192)
T 3k1r_A          163 KVRHIGL  169 (192)
T ss_dssp             EEEECCE
T ss_pred             EEEECCc
Confidence            9998754

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.79  E-value=1e-08  Score=88.83  Aligned_cols=81  Identities=15%  Similarity=0.313  Sum_probs=65.0

Q ss_pred             ceeeEEeccCCCCccceeeccC-------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC-E
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS-V  499 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~-t  499 (530)
                      ..+.+.|.++....|||.+.++       . |..|.++++|+++| |+.||+|++|||+.|.+++..++..++++.++ .
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~   94 (119)
T 1x6d_A           15 GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   94 (119)
T ss_dssp             TEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             CeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCe
Confidence            3455666676667799998643       3 89999999999999 99999999999999999999999999986554 4


Q ss_pred             EEEEEEeCcch
Q psy9257         500 LTLTLIPTSMY  510 (530)
Q Consensus       500 VtLtVip~~~~  510 (530)
                      +.+++.|....
T Consensus        95 ~~l~v~R~~~~  105 (119)
T 1x6d_A           95 QAVIVTRKLTP  105 (119)
T ss_dssp             EEEEEEECCCS
T ss_pred             EEEEEEcCCCc
Confidence            55777776543

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.78  E-value=1e-08  Score=90.89  Aligned_cols=78  Identities=23%  Similarity=0.332  Sum_probs=65.9

Q ss_pred             ceeeEEeccCCCCccceeeccC---------c-EEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHHHhC-C
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG---------Q-IVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAMEKG-G  497 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G---------v-V~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iLkrs-G  497 (530)
                      +.++|+|.++. ..|||.+.+|         . |..|.++++|+++ ||+.||+|++|||+++.+++++++..+|+.. +
T Consensus        29 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  107 (130)
T 1i16_A           29 TVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD  107 (130)
T ss_dssp             EEEEEEEETTS-SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS
T ss_pred             cEEEEEEEcCC-CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45667777765 4599999743         2 8999999999999 8999999999999999999999999999976 4


Q ss_pred             CEEEEEEEeCc
Q psy9257         498 SVLTLTLIPTS  508 (530)
Q Consensus       498 ~tVtLtVip~~  508 (530)
                      ..+.|+|.|..
T Consensus       108 ~~v~l~v~r~~  118 (130)
T 1i16_A          108 GPVTIVIRRKS  118 (130)
T ss_dssp             SEEEEEEEEES
T ss_pred             ceEEEEEEeCC
Confidence            57999998764

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=7.6e-09  Score=86.87  Aligned_cols=78  Identities=21%  Similarity=0.413  Sum_probs=65.8

Q ss_pred             ceeeEEeccCCC-Cccceeecc--Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         430 LERTVTLHRDSS-GHFGFHFNK--GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       430 ~e~tVtL~kd~~-g~LGfs~~~--Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      ..++++|.++.. ..+||.+.+  +. |..|.++++|+ +||+.||+|++|||++|.++.+.++...+++.++.+.|+|.
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~   86 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV   86 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCSSSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEE
T ss_pred             ccEEEEEEECCCCCcccEEEecCCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            456677777653 358998864  33 88999999995 99999999999999999999988999999888999999999


Q ss_pred             eCc
Q psy9257         506 PTS  508 (530)
Q Consensus       506 p~~  508 (530)
                      |..
T Consensus        87 R~~   89 (96)
T 2edv_A           87 RCT   89 (96)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            875

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.77  E-value=5.1e-08  Score=85.36  Aligned_cols=78  Identities=18%  Similarity=0.415  Sum_probs=63.7

Q ss_pred             ceeeEEeccCCCCccceeecc---------C-cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---------G-QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---------G-vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--  496 (530)
                      +.+.+.+.+... .|||.+..         | .|..|.++++|+++| |+.||+|++|||++|.+++.+++..+++..  
T Consensus        30 ~~~~v~l~~~~~-~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~  108 (121)
T 2kom_A           30 KRLNIQLKKGTE-GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKM  108 (121)
T ss_dssp             EEEEEEEECCTT-CCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEcCCC-cEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Confidence            445566666544 48888753         2 288999999999999 999999999999999999888899988864  


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      ++.++|+|.|..
T Consensus       109 g~~v~l~v~R~g  120 (121)
T 2kom_A          109 EGTVSLLVFRQE  120 (121)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCEEEEEEEeCC
Confidence            789999998753

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.75  E-value=6.9e-09  Score=87.22  Aligned_cols=68  Identities=22%  Similarity=0.326  Sum_probs=58.0

Q ss_pred             CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEEecc
Q psy9257         368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVTLHR  438 (530)
Q Consensus       368 ~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVtL~k  438 (530)
                      ..|++|..|.++|+|++ ||+.||+|++|||+.+.++.+  +..+++.. .++.+.|+|.|+++.+++++..
T Consensus         4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~   72 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTSEQ--IVSYVREKQAGDRVRVTFIRDRKQHEAELVL   72 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCHHH--HHHHHHHSCTTCCEEEEEEETTEEEEEEECC
T ss_pred             CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCCEEEEEEEECCEEEEEEEEE
Confidence            46899999999999999 999999999999999988644  66677665 6889999999998887777653

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.74  E-value=2.4e-08  Score=84.18  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             EEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEEEecCC--ceeeEEe
Q psy9257         371 VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIRDRP--LERTVTL  436 (530)
Q Consensus       371 V~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLtVrR~~--~e~tVtL  436 (530)
                      .+|..|.++|+|+++||+.||+|++|||+.|.+|.+  +...+.... ++.+.|+|.|++  .+++++|
T Consensus         4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~d--~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l   70 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDA--VRLQLVDKIGDESTTITVAPFGSDQRRDVKL   70 (95)
T ss_dssp             CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSHHH--HHHHHHHTTTCSEEEEEEECTTCCCCEEEEE
T ss_pred             CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHHhcCCCcEEEEEEECCCCceEEEEE
Confidence            368899999999999999999999999999999865  566665544 478999999875  3444444

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.73  E-value=4.6e-08  Score=80.30  Aligned_cols=66  Identities=26%  Similarity=0.299  Sum_probs=55.5

Q ss_pred             Cccceeecc---Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeC
Q psy9257         442 GHFGFHFNK---GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPT  507 (530)
Q Consensus       442 g~LGfs~~~---Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~  507 (530)
                      ..|||.+..   |. |..|.++++|+++||+.||+|++|||+++.+.+.+++..+++  +.++.+.|+|.|.
T Consensus        17 ~~lG~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           17 LDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY   88 (90)
T ss_dssp             SCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CcccEEEEecCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence            468988752   33 889999999999999999999999999996666678888887  3588999999875

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.72  E-value=3.2e-08  Score=85.46  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=63.5

Q ss_pred             eeeEEeccCCCCccceeeccC----c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG----Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G----v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      .+.|.+.+.. ..|||.+..+    . |..|.++++|+++||+.||+|++|||++|.++.+.+....+++.++.+.|+|.
T Consensus        20 ~~~v~l~~~~-~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~   98 (117)
T 1uit_A           20 PRHVKVQKGS-EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQ   98 (117)
T ss_dssp             CEEEEEECSS-CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEEC
T ss_pred             CEEEEEEeCC-CCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            3466676655 4589988643    3 88999999999999999999999999999999877766666678899999998


Q ss_pred             eCc
Q psy9257         506 PTS  508 (530)
Q Consensus       506 p~~  508 (530)
                      |..
T Consensus        99 r~~  101 (117)
T 1uit_A           99 YNP  101 (117)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            764

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.72  E-value=4.1e-08  Score=91.72  Aligned_cols=79  Identities=23%  Similarity=0.412  Sum_probs=66.7

Q ss_pred             EEEeccCCCeeEEEEEec-----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         350 LVLCKDASGLIGLRVCAI-----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~-----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      +.+.+.....|||.+...     ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++.+++..+++.. +..+.|
T Consensus       111 v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l  189 (196)
T 1p1d_A          111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKL  189 (196)
T ss_dssp             EEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEE
T ss_pred             EEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEE
Confidence            334333445689998865     5789999999999999999 999999999999999997777899999887 889999


Q ss_pred             EEecCC
Q psy9257         424 VIRDRP  429 (530)
Q Consensus       424 tVrR~~  429 (530)
                      +|.|++
T Consensus       190 ~v~R~~  195 (196)
T 1p1d_A          190 KIRKDE  195 (196)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998864

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.72  E-value=7.3e-08  Score=90.02  Aligned_cols=78  Identities=23%  Similarity=0.357  Sum_probs=67.4

Q ss_pred             eeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      .+.+.|.+...+.|||.+..|       .|..|.++++|+++ ||+.||+|++|||+.+.++++.++..+++..++.+.|
T Consensus         8 ~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l   87 (200)
T 2qt5_A            8 STVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVL   87 (200)
T ss_dssp             EEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEE
T ss_pred             CEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            355667776677799999643       29999999999999 9999999999999999999999999999888999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.|..
T Consensus        88 ~v~R~~   93 (200)
T 2qt5_A           88 EVEYEL   93 (200)
T ss_dssp             EEEEEC
T ss_pred             EEeccC
Confidence            998743

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.71  E-value=6.4e-08  Score=80.81  Aligned_cols=76  Identities=32%  Similarity=0.514  Sum_probs=61.2

Q ss_pred             eeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCC-EEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGS-VLTLT  503 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~-tVtLt  503 (530)
                      .+.+.+.+... .|||.+..     |. |..|.++|+|+++||+.||+|++|||+++.+++.+++..+++...+ .+.|+
T Consensus        10 ~~~~~l~~~~~-g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~   88 (98)
T 2jxo_A           10 PRLCTMKKGPS-GYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV   88 (98)
T ss_dssp             CEEEEEECTTT-CCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEE
T ss_pred             cEEEEEEeCCC-cccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEE
Confidence            45566666654 48999863     33 8899999999999999999999999999999888899999986544 55677


Q ss_pred             EEeC
Q psy9257         504 LIPT  507 (530)
Q Consensus       504 Vip~  507 (530)
                      |.|.
T Consensus        89 v~R~   92 (98)
T 2jxo_A           89 VDRE   92 (98)
T ss_dssp             CCHH
T ss_pred             EECC
Confidence            7654

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.71  E-value=4.1e-08  Score=88.40  Aligned_cols=64  Identities=17%  Similarity=0.313  Sum_probs=52.5

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcchhhhhhc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSMYQHMMKK  516 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~~e~m~kk  516 (530)
                      |..|.++++|+++||+.||+|++|||+++.+++.+++..+|+. .|+.+.|+|.|.........+
T Consensus        68 V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~  132 (139)
T 2vz5_A           68 VTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQS  132 (139)
T ss_dssp             EEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC-------C
T ss_pred             EEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEe
Confidence            8899999999999999999999999999999888899998875 678999999998755444443

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.70  E-value=4.2e-08  Score=85.57  Aligned_cols=66  Identities=21%  Similarity=0.396  Sum_probs=57.4

Q ss_pred             ccceeeccC--------cEEEEccCCHHHHc-CCCCCCEEEEEcCeecCCCChHHHHHHHHh----CCCEEEEEEEeCc
Q psy9257         443 HFGFHFNKG--------QIVSLVKDSSAARN-GLLVNHNILEVNGANVVGLKDKELLEAMEK----GGSVLTLTLIPTS  508 (530)
Q Consensus       443 ~LGfs~~~G--------vV~sVv~gSpAarA-GLr~GDrILeVNGq~V~gls~eeVv~iLkr----sG~tVtLtVip~~  508 (530)
                      .|||.+.+|        .|..|.++++|+++ ||+.||+|++|||+.+.+++.+++..+|++    .++.++|+|.|..
T Consensus        29 glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~  107 (118)
T 1v6b_A           29 SLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             CCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence            589988643        28899999999999 899999999999999999998888888874    3889999998853

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.69  E-value=9.2e-08  Score=80.51  Aligned_cols=77  Identities=26%  Similarity=0.371  Sum_probs=63.2

Q ss_pred             CceeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEE
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTL  502 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtL  502 (530)
                      .+.++++|.+... .|||.+.+   |. |..|.++  |+++||+.||+|++|||++|.+++++++..+|+.  .++.+.|
T Consensus         9 ~~~~~v~l~~~~~-g~G~~i~~~~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   85 (96)
T 1ujv_A            9 AELMTLTIVKGAQ-GFGFTIADSPTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSL   85 (96)
T ss_dssp             CCCEEEEEECCSS-SSSEEEEEETTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEE
T ss_pred             ceEEEEEEEeCCC-ceeEEEEcCCCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            3556777777664 48999863   33 7788773  7889999999999999999999998999999986  4789999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.|..
T Consensus        86 ~v~R~g   91 (96)
T 1ujv_A           86 IIHRGS   91 (96)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            998864

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.68  E-value=8.5e-08  Score=81.92  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=65.5

Q ss_pred             eeEEeccCCCCccceeecc-----C-cEEEEccCCHHHHcCC-CCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNK-----G-QIVSLVKDSSAARNGL-LVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLT  503 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~-----G-vV~sVv~gSpAarAGL-r~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLt  503 (530)
                      ++++|.+.....|||.+..     | .|..|.++++|+++|| +.||+|++|||+.+.++..+++..+++. .++.+.|+
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~   82 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   82 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred             EEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEE
Confidence            4566666666669999863     2 3889999999999997 9999999999999999888889988875 56899999


Q ss_pred             EEeCcch
Q psy9257         504 LIPTSMY  510 (530)
Q Consensus       504 Vip~~~~  510 (530)
                      |.|....
T Consensus        83 v~R~g~~   89 (112)
T 1qau_A           83 ILRGPEG   89 (112)
T ss_dssp             EEECCTT
T ss_pred             EEeCCcc
Confidence            9987643

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.67  E-value=8.4e-08  Score=83.81  Aligned_cols=80  Identities=30%  Similarity=0.466  Sum_probs=65.1

Q ss_pred             ceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC-CCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG-GSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs-G~tVtL  502 (530)
                      ..+.+++.++..+ |||.+..     |. |..|.++++|+++||+.||+|++|||+++.+++.+++..+++.. +..+.|
T Consensus         9 ~~r~v~l~~~~~g-~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l   87 (128)
T 2kjd_A            9 RPRLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL   87 (128)
T ss_dssp             CCEEEEEECCSSS-CCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEE
T ss_pred             CcEEEEEecCCCc-ccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence            4566777777654 8999863     33 88999999999999999999999999999998888999999865 456778


Q ss_pred             EEEeCcch
Q psy9257         503 TLIPTSMY  510 (530)
Q Consensus       503 tVip~~~~  510 (530)
                      +|.|....
T Consensus        88 ~v~R~g~~   95 (128)
T 2kjd_A           88 VVDRETDE   95 (128)
T ss_dssp             EECHHHHH
T ss_pred             EEEeCCcc
Confidence            88776543

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.66  E-value=6.2e-08  Score=82.92  Aligned_cols=73  Identities=19%  Similarity=0.377  Sum_probs=56.4

Q ss_pred             eeeEEeccCCC--Cccceeecc-------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         431 ERTVTLHRDSS--GHFGFHFNK-------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       431 e~tVtL~kd~~--g~LGfs~~~-------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      .+.|+|.|...  ..+||.+..       |. |..|.++|+|+++||+.||+|++|||++|.+++.+++..++++  ..+
T Consensus         7 ~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~l   84 (94)
T 3kzd_A            7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSL   84 (94)
T ss_dssp             EEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS--SEE
T ss_pred             eeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CeE
Confidence            34556666543  358888863       22 8899999999999999999999999999999998999998875  456


Q ss_pred             EEEEE
Q psy9257         501 TLTLI  505 (530)
Q Consensus       501 tLtVi  505 (530)
                      +|+|.
T Consensus        85 ~ltV~   89 (94)
T 3kzd_A           85 GLLVR   89 (94)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66664

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.65  E-value=1e-07  Score=84.14  Aligned_cols=67  Identities=22%  Similarity=0.355  Sum_probs=59.0

Q ss_pred             Cccceeecc----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCc
Q psy9257         442 GHFGFHFNK----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTS  508 (530)
Q Consensus       442 g~LGfs~~~----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~  508 (530)
                      ..|||.+..    |. |..|.++++|+++||+.||+|++|||+.|.+++.+++..+|+  +.++.++|+|.+..
T Consensus        39 ~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           39 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             SCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred             CceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            458998864    33 889999999999999999999999999999998888988887  57889999998875

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.64  E-value=1.1e-08  Score=86.66  Aligned_cols=77  Identities=19%  Similarity=0.303  Sum_probs=63.1

Q ss_pred             eeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      ++++.+..  ...|||.+..+       .|..|.++++|+++||+.||+|++|||+++.+++.+++..+|++.++.+.|+
T Consensus         6 ~~~v~~~~--~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   83 (103)
T 1v5l_A            6 SGNVVLPG--PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK   83 (103)
T ss_dssp             CBCCEEES--SSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECE
T ss_pred             EEEEEEcC--CCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            34444433  24588888643       2778899999999999999999999999999988889999998879999999


Q ss_pred             EEeCcc
Q psy9257         504 LIPTSM  509 (530)
Q Consensus       504 Vip~~~  509 (530)
                      |.|...
T Consensus        84 v~R~g~   89 (103)
T 1v5l_A           84 IDRAET   89 (103)
T ss_dssp             ECCCTT
T ss_pred             EEECCe
Confidence            988763

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.06  E-value=3.9e-09  Score=91.83  Aligned_cols=74  Identities=27%  Similarity=0.434  Sum_probs=62.3

Q ss_pred             eeEEeccCCCCccceeeccC-------cEEEEccCCHHHH-cCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAAR-NGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAar-AGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      +++.|.++....|||.+.+|       .|..|.++|+|++ +||+.||+|++|||++|.+++.+++..++++.++.++|+
T Consensus        29 ~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~  108 (112)
T 2lob_A           29 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE  108 (112)
Confidence            45566666666799998764       3889999999999 899999999999999999888888999998777778887


Q ss_pred             EE
Q psy9257         504 LI  505 (530)
Q Consensus       504 Vi  505 (530)
                      |.
T Consensus       109 V~  110 (112)
T 2lob_A          109 VV  110 (112)
Confidence            75

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.61  E-value=1e-07  Score=84.69  Aligned_cols=77  Identities=30%  Similarity=0.292  Sum_probs=60.8

Q ss_pred             cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEeccC----CC
Q psy9257         367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLHRD----SS  441 (530)
Q Consensus       367 ~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~kd----~~  441 (530)
                      ...|++|..|.++++|+++ |+.||+|++|||+.+.++.+  +..+++. ..++.+.|+| |+++ +++++...    ..
T Consensus        23 ~~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~~d--l~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~~~~~~~~   97 (125)
T 2hga_A           23 QPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTT--YSAALKTISVGEVINITT-DQGT-FHLKTGRNPNNSSR   97 (125)
T ss_dssp             CCCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHH--HHHHHTTCCTTCEEEEEE-TTEE-EEEECCBCSSSCCS
T ss_pred             CCCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEE-ECCE-EEEEEeccCCCCCc
Confidence            3478999999999999999 99999999999999998755  6666653 5678999999 8777 77777642    12


Q ss_pred             Cccceee
Q psy9257         442 GHFGFHF  448 (530)
Q Consensus       442 g~LGfs~  448 (530)
                      ..+|+.+
T Consensus        98 ~~lGi~~  104 (125)
T 2hga_A           98 AYMGIRT  104 (125)
T ss_dssp             CBCCEEE
T ss_pred             eEEEEEe
Confidence            3466654

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.61  E-value=1.4e-07  Score=79.37  Aligned_cols=55  Identities=18%  Similarity=0.326  Sum_probs=49.9

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeC
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPT  507 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~  507 (530)
                      |..|.++|+|+++||+.||+|++|||+++.++..+++...+++ .++.+.|+|.|+
T Consensus        49 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           49 VTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             EEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             EEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            8899999999999999999999999999999988889988874 568999998764

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.61  E-value=6e-08  Score=81.54  Aligned_cols=78  Identities=28%  Similarity=0.431  Sum_probs=60.1

Q ss_pred             ceeeEEeccC-CCCccceeeccC------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRD-SSGHFGFHFNKG------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd-~~g~LGfs~~~G------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.+++.+.+. ....|||.+..+      . |..|.++++|+++||+.||+|++|||+.+.++.+.++...+ +.++.+.
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~-~~~~~v~   86 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKAL-KGSKKLV   86 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHS-SSSSSCC
T ss_pred             ccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhh-cCCCeEE
Confidence            3455666553 345699998643      3 88999999999999999999999999999999876555544 4456788


Q ss_pred             EEEEeCc
Q psy9257         502 LTLIPTS  508 (530)
Q Consensus       502 LtVip~~  508 (530)
                      |+|.|..
T Consensus        87 l~v~R~g   93 (101)
T 1uez_A           87 LSVYSAG   93 (101)
T ss_dssp             EEECCCC
T ss_pred             EEEEECC
Confidence            8887754

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.59  E-value=5.3e-08  Score=87.14  Aligned_cols=77  Identities=26%  Similarity=0.357  Sum_probs=64.3

Q ss_pred             ceeeEEeccCCCCccceeecc---C-cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---G-QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---G-vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtL  502 (530)
                      ..+++.|.+...+ |||.+..   + .|..|.++++|+++| |+.||+|++|||++|.+.+.+++..+|+.  .|+.++|
T Consensus        27 ~~~~~~l~k~~~g-lG~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l  105 (126)
T 1wif_A           27 KVIQTKLTVGNLG-LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQI  105 (126)
T ss_dssp             CEEEEEEECCTTC-CCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEE
T ss_pred             ceEEEEEecCCce-EeEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEE
Confidence            3445666666554 8998753   2 288999999999999 99999999999999998888999999985  5889999


Q ss_pred             EEEeC
Q psy9257         503 TLIPT  507 (530)
Q Consensus       503 tVip~  507 (530)
                      +|.|.
T Consensus       106 ~V~R~  110 (126)
T 1wif_A          106 KAYRG  110 (126)
T ss_dssp             EEESS
T ss_pred             EEEEC
Confidence            99987

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.59  E-value=3.9e-08  Score=85.43  Aligned_cols=77  Identities=17%  Similarity=0.292  Sum_probs=62.2

Q ss_pred             eeeEEeccCCCCccceeeccC--c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCC-CEEEEEEEe
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG--Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGG-SVLTLTLIP  506 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G--v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG-~tVtLtVip  506 (530)
                      .++|.|.+.. ..|||.+.++  . |..|.++++|+++||+.||+|++|||++|.+++.+++..+|+..+ +.+.|+|.+
T Consensus        16 ~r~v~l~~~~-~~~G~~l~~~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~   94 (111)
T 1vae_A           16 PRGIHFTVEE-GDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             CCCCCEECCS-SCCSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             CeEEEEEcCC-CcccEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence            3556676653 5589988643  3 788999999999999999999999999999888889999988654 469999876


Q ss_pred             Cc
Q psy9257         507 TS  508 (530)
Q Consensus       507 ~~  508 (530)
                      ..
T Consensus        95 ~~   96 (111)
T 1vae_A           95 LL   96 (111)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.56  E-value=8.8e-08  Score=92.79  Aligned_cols=83  Identities=30%  Similarity=0.456  Sum_probs=67.7

Q ss_pred             cCCceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         427 DRPLERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       427 R~~~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      +..+.+.|+|.++..+ |||.+..     |. |..|..+++|+++||+.||+|++|||+.|.++..+++..+|+..++.+
T Consensus         6 ~~~~~r~v~l~k~~~g-lG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v   84 (216)
T 2krg_A            6 TMLRPRLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET   84 (216)
T ss_dssp             TTCCCEEEEEECCSSS-SCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEE
T ss_pred             cccceEEEEEEeCCCC-ceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeE
Confidence            3445677777777654 9999863     33 899999999999999999999999999999888788998888668888


Q ss_pred             -EEEEEeCcch
Q psy9257         501 -TLTLIPTSMY  510 (530)
Q Consensus       501 -tLtVip~~~~  510 (530)
                       .|+|.|....
T Consensus        85 ~~l~V~R~g~~   95 (216)
T 2krg_A           85 KLLVVDRETDE   95 (216)
T ss_dssp             EEEECCHHHHH
T ss_pred             EEEEEEECCEE
Confidence             8888765533

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.56  E-value=4e-07  Score=83.03  Aligned_cols=78  Identities=24%  Similarity=0.429  Sum_probs=63.9

Q ss_pred             ceeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTL  504 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtV  504 (530)
                      +.++|.|.+...+.|||.+..   |. |..|.++++|+++||+.||+|++|||+++.++.++....+++. .++.++|+|
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~v   83 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI   83 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             CCEEEEEEeCCCCcEeEEEEeCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEE
Confidence            456788888777789999863   33 8899999999999999999999999999999986556666654 566999999


Q ss_pred             EeC
Q psy9257         505 IPT  507 (530)
Q Consensus       505 ip~  507 (530)
                      .+.
T Consensus        84 r~~   86 (166)
T 1w9e_A           84 RDR   86 (166)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            544

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=1.3e-07  Score=82.76  Aligned_cols=77  Identities=18%  Similarity=0.348  Sum_probs=62.0

Q ss_pred             eeeEEeccCCCC--ccceeecc-------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         431 ERTVTLHRDSSG--HFGFHFNK-------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       431 e~tVtL~kd~~g--~LGfs~~~-------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      .+.+.|.+....  .|||.+..       |. |..|.++++|+++||+.||+|++|||++|.+++.+++..+++.  ..+
T Consensus        16 ~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~~v   93 (114)
T 2d8i_A           16 TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSL   93 (114)
T ss_dssp             EEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS--SEE
T ss_pred             eEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC--CcE
Confidence            456677666553  58888752       22 8899999999999999999999999999999887788888874  489


Q ss_pred             EEEEEeCcc
Q psy9257         501 TLTLIPTSM  509 (530)
Q Consensus       501 tLtVip~~~  509 (530)
                      .|+|.|...
T Consensus        94 ~l~v~R~p~  102 (114)
T 2d8i_A           94 GLLVRTYPE  102 (114)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCC
Confidence            999987653

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.51  E-value=1.9e-07  Score=86.50  Aligned_cols=53  Identities=11%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEe
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP  506 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip  506 (530)
                      |..|.++++|++ ||+.||+|++|||+.|.++.+.++...+++.++.+.|+|.|
T Consensus        28 V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A           28 VTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             EEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             EEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            889999999999 99999999999999999999999999999988899999998

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.51  E-value=4.6e-07  Score=78.78  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=58.1

Q ss_pred             EEeccCCCCccceeecc---C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh---CCCEEEEEEEe
Q psy9257         434 VTLHRDSSGHFGFHFNK---G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK---GGSVLTLTLIP  506 (530)
Q Consensus       434 VtL~kd~~g~LGfs~~~---G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr---sG~tVtLtVip  506 (530)
                      +.+.+.. ..+||.+..   + .|.+|.++|+|+++||+.||+|++|||+.|...+.+++...+++   +++.+.|+|..
T Consensus        21 l~l~~~~-~g~G~~l~~~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~   99 (101)
T 3qik_A           21 LLILPQE-EDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT   99 (101)
T ss_dssp             EEECCCS-SSSSEEEEEETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEeCC-CcccEEEEccCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence            3344433 347888753   2 38899999999999999999999999999976666889888875   68999999875


Q ss_pred             C
Q psy9257         507 T  507 (530)
Q Consensus       507 ~  507 (530)
                      +
T Consensus       100 ~  100 (101)
T 3qik_A          100 K  100 (101)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.51  E-value=1.4e-07  Score=82.81  Aligned_cols=59  Identities=25%  Similarity=0.347  Sum_probs=52.7

Q ss_pred             EEEEcc--CCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcchh
Q psy9257         453 IVSLVK--DSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ  511 (530)
Q Consensus       453 V~sVv~--gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~e  511 (530)
                      |..|.+  +++|+++||+.||+|++|||+.|.++..+++..+|+..++.+.|+|.|....+
T Consensus        48 V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~~  108 (118)
T 2yub_A           48 VKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQ  108 (118)
T ss_dssp             EEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSCC
T ss_pred             EEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEEE
Confidence            778888  99999999999999999999999999888899999876889999998876443

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.50  E-value=1.1e-07  Score=83.34  Aligned_cols=81  Identities=22%  Similarity=0.310  Sum_probs=67.1

Q ss_pred             ceeeEEeccCCCCccceeecc-----Cc-EEEEccCCHHHHcCC-CCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK-----GQ-IVSLVKDSSAARNGL-LVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~-----Gv-V~sVv~gSpAarAGL-r~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVt  501 (530)
                      +.+++.+.+.....|||.+..     +. |..|.++++|+++|| +.||+|++|||+.+.+++.+++..+++. .++.+.
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~   87 (127)
T 1b8q_A            8 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   87 (127)
T ss_dssp             CSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEE
T ss_pred             ceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence            456677777766679998863     22 888999999999998 9999999999999999888899998885 468999


Q ss_pred             EEEEeCcch
Q psy9257         502 LTLIPTSMY  510 (530)
Q Consensus       502 LtVip~~~~  510 (530)
                      |+|.|....
T Consensus        88 l~v~R~g~~   96 (127)
T 1b8q_A           88 VLILRGPEG   96 (127)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEeCCce
Confidence            999887643

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.40  E-value=7.8e-07  Score=95.33  Aligned_cols=75  Identities=21%  Similarity=0.368  Sum_probs=65.4

Q ss_pred             eeEEeccCCCCccceeecc----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNK----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTL  504 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtV  504 (530)
                      +.|.+.+.  ..|||.+.+    |. |..|.++|+|+++||+.||+|++|||+.|.+++.+++..+|++  .|+.++|+|
T Consensus         3 r~V~l~k~--~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V   80 (468)
T 3shw_A            3 KLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILA   80 (468)
T ss_dssp             EEEEEECC--SSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEE
T ss_pred             eEEEEecC--CccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEE
Confidence            45666665  569999854    33 8999999999999999999999999999999999999999987  889999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .+..
T Consensus        81 ~r~g   84 (468)
T 3shw_A           81 QKKK   84 (468)
T ss_dssp             EECH
T ss_pred             EECC
Confidence            9875

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.37  E-value=9e-07  Score=93.24  Aligned_cols=69  Identities=25%  Similarity=0.318  Sum_probs=60.2

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCC
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS  440 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~  440 (530)
                      .|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +.++++.. +..+.|+|.|+++++.+++.+..
T Consensus       363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~--~~~~l~~~-~~~v~l~v~R~g~~~~~~~~~~~  431 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE--MRKVLAAK-PAIIALQIVRGNESIYLLMRLEH  431 (436)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhC-CCeEEEEEEECCEEEEEEEEecc
Confidence            58999999999999999999999999999999998754  77888764 45899999999998888877654

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.37  E-value=4.9e-07  Score=92.71  Aligned_cols=69  Identities=19%  Similarity=0.346  Sum_probs=56.2

Q ss_pred             cceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCcchhhhh
Q psy9257         444 FGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTSMYQHMM  514 (530)
Q Consensus       444 LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~~~e~m~  514 (530)
                      +|+....|. |.+|.++|+|+++||+.||+|++|||+.|.++  .++...+..  .|+.++|+|.|......+.
T Consensus       257 ~gl~~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~  328 (345)
T 3stj_A          257 FNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVE  328 (345)
T ss_dssp             TTCSCCSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEE
T ss_pred             cCCCCCceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            454444454 88999999999999999999999999999977  578887764  6899999999987554443

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.34  E-value=1.5e-06  Score=90.79  Aligned_cols=76  Identities=21%  Similarity=0.356  Sum_probs=64.3

Q ss_pred             eeeEEeccCCCCccceeeccC----c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG----Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLT  503 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G----v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLt  503 (530)
                      .+.+.+.+..  .|||.+.+|    . |..|.++|+|+++||+.||+|++|||+.+.+++.+++..+|++  .|+.++|+
T Consensus        10 ~~~v~~~k~~--~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~   87 (391)
T 3tsz_A           10 MKLVKFRKGD--SVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL   87 (391)
T ss_dssp             EEEEEEECCS--SCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE
T ss_pred             cEEEEeecCC--ceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEE
Confidence            3445555543  499998753    3 8999999999999999999999999999999999999999984  88999999


Q ss_pred             EEeCc
Q psy9257         504 LIPTS  508 (530)
Q Consensus       504 Vip~~  508 (530)
                      |.+..
T Consensus        88 v~r~~   92 (391)
T 3tsz_A           88 AQKKK   92 (391)
T ss_dssp             EEECH
T ss_pred             EeeCC
Confidence            99875

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.28  E-value=9.6e-07  Score=77.28  Aligned_cols=65  Identities=20%  Similarity=0.347  Sum_probs=54.5

Q ss_pred             Cccceeecc--------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCc
Q psy9257         442 GHFGFHFNK--------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTS  508 (530)
Q Consensus       442 g~LGfs~~~--------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~  508 (530)
                      ..|||.+..        |. |..|.++++|+++| |+.||+|++|||+.|.++  +++..+|+. .++.+.|+|.|..
T Consensus        32 ~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g  107 (124)
T 1wh1_A           32 DKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKNFSLLIARPE  107 (124)
T ss_dssp             CCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCSCCEEEEECS
T ss_pred             CcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCEEEEEEEECC
Confidence            458888752        33 88999999999999 999999999999999864  678888875 4788999998875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.26  E-value=2.7e-06  Score=96.52  Aligned_cols=82  Identities=22%  Similarity=0.212  Sum_probs=69.8

Q ss_pred             ccCCCeeEEEEEecCCcEEEEEeccC--------CHhhhcC--CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         354 KDASGLIGLRVCAINEGVFVCLVERG--------SPASLVG--LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       354 K~s~G~LG~~V~~~~~GV~Vs~V~pG--------SPAakAG--Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ....+++|+.+...+.+++|..|.+|        |||+++|  |+ ||+|++|||+.+.++.+  +..+++...|..|.|
T Consensus       733 ~~~~~g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~~--~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          733 PFRSGRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGSN--IYRVLSEKAGTSARI  809 (1045)
T ss_dssp             CCCCCBCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTBC--HHHHHHTTTTSEEEE
T ss_pred             ccccceecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchhh--HHHhhcCCCCCEEEE
Confidence            34556899999888889999999998        9999999  99 99999999999999874  678888888999999


Q ss_pred             EEecCC-ceeeEEecc
Q psy9257         424 VIRDRP-LERTVTLHR  438 (530)
Q Consensus       424 tVrR~~-~e~tVtL~k  438 (530)
                      +|.|++ +.++++|.+
T Consensus       810 ~v~r~~~~~~~~~~~~  825 (1045)
T 1k32_A          810 RLSGKGGDKRDLMIDI  825 (1045)
T ss_dssp             EEECSSSCEEEEEEEC
T ss_pred             EEECCCCceEEEEEEE
Confidence            999976 455666653

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.25  E-value=8.9e-07  Score=93.09  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=55.4

Q ss_pred             eeEEEEEecCC-----cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCc
Q psy9257         359 LIGLRVCAINE-----GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL  430 (530)
Q Consensus       359 ~LG~~V~~~~~-----GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~  430 (530)
                      ++||.+.....     .++|..|.+||||++|||+.||+|++|||+.|.++.   +..+++. .+..|+|+|.|+++
T Consensus        75 G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g~  147 (403)
T 3k50_A           75 GFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEVV  147 (403)
T ss_dssp             SEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEEC
T ss_pred             ceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCCc
Confidence            37777665332     378999999999999999999999999999999985   4556655 78899999988654

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.21  E-value=1.6e-06  Score=92.01  Aligned_cols=65  Identities=23%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEe
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL  436 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL  436 (530)
                      .|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +.++++. .+..+.|+|.|+++.+.+.|
T Consensus       386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~--~~~~l~~-~~~~v~l~v~R~g~~~~v~l  450 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKS--LQTIAQE-KKKELLVQVLRGPGSMYLLV  450 (451)
T ss_dssp             EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH--HHHHTTS-SCSCEEEEEEETTEEEEEEE
T ss_pred             CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHhc-CCCeEEEEEEECCEEEEEEe
Confidence            58999999999999999999999999999999998744  7777766 57889999999988877765

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.13  E-value=2.2e-06  Score=89.12  Aligned_cols=80  Identities=19%  Similarity=0.366  Sum_probs=65.8

Q ss_pred             ceeeEEeccCCCCccceeecc---C------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh--CC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNK---G------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK--GG  497 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~---G------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr--sG  497 (530)
                      ..+++.+.+...+.|||.+.+   |      .|..|.++|+|+++| |+.||+|++|||+++.++++.++..+++.  .+
T Consensus       204 ~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~  283 (388)
T 3suz_A          204 NCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQ  283 (388)
T ss_dssp             CCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTC
T ss_pred             cceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCC
Confidence            446777777766678998753   2      388999999999999 99999999999999999988888888875  45


Q ss_pred             CEEEEEEEeCcc
Q psy9257         498 SVLTLTLIPTSM  509 (530)
Q Consensus       498 ~tVtLtVip~~~  509 (530)
                      ..++|+|.+...
T Consensus       284 ~~v~l~v~r~~~  295 (388)
T 3suz_A          284 TQVKLNIVSCPP  295 (388)
T ss_dssp             SCEEEEEEECCS
T ss_pred             Cccccccccccc
Confidence            669999987653

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.13  E-value=6.2e-06  Score=69.32  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCcc
Q psy9257         452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTSM  509 (530)
Q Consensus       452 vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~~  509 (530)
                      .|..|.++|+|+++||+.||+|++|||+.|.++  +++...+..  .++.+.|+|.|...
T Consensus         5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             BEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCC
Confidence            588999999999999999999999999999988  467777753  34789999998763

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.04  E-value=5.5e-06  Score=73.82  Aligned_cols=55  Identities=16%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~~~  510 (530)
                      |..|.++|+|+ +||+.||+|++|||+.+.++  .++...+..  .|+.++|+|.|....
T Consensus        61 V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~  117 (134)
T 2l97_A           61 VRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKE  117 (134)
T ss_dssp             EEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred             EEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            88999999999 99999999999999999987  467777764  588999999987644

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.03  E-value=7.6e-06  Score=69.09  Aligned_cols=56  Identities=18%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCcchh
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTSMYQ  511 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~~~e  511 (530)
                      |..|.++++|++ ||+.||+|++|||+.+.++  +++...+..  .|+.+.|+|.|.....
T Consensus        11 V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~   68 (100)
T 3i18_A           11 VMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDKNE   68 (100)
T ss_dssp             EEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             EEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            889999999996 9999999999999999987  568887874  5789999999876443

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.02  E-value=7.5e-06  Score=67.11  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=48.1

Q ss_pred             cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcch
Q psy9257         452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSMY  510 (530)
Q Consensus       452 vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~~  510 (530)
                      .|..|.++++|+++||+.||+|++|||+.+.++  +++...+.. .++.+.|+|.|....
T Consensus         7 ~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~~   64 (91)
T 2zpm_A            7 VLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGSP   64 (91)
T ss_dssp             BCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred             EEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCeE
Confidence            377899999999999999999999999999987  567777764 467899999887643

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.00  E-value=5.7e-06  Score=68.03  Aligned_cols=55  Identities=11%  Similarity=0.072  Sum_probs=44.6

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~  509 (530)
                      |..+.++++|+++||+.||+|++|||+.|.++  +++..+++  +.++.++|+|.|...
T Consensus        23 V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           23 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            45555666779999999999999999999988  46777776  357899999988753

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.99  E-value=8.7e-06  Score=69.58  Aligned_cols=55  Identities=24%  Similarity=0.259  Sum_probs=48.0

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      |..|.++|+|+++||+.||+|++|||+.+.++  +++...++. ++.+.|+|.|....
T Consensus        39 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R~g~~   93 (113)
T 2pzd_A           39 IHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRET   93 (113)
T ss_dssp             EEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH-CSSEEEEEEETTEE
T ss_pred             EEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEECCEE
Confidence            88999999999999999999999999999865  577777776 68899999887643

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=97.94  E-value=2.2e-06  Score=71.88  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=47.5

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~~~  510 (530)
                      |..|.++|+|++ ||+.||+|++|||+++.++  .++..+++.  .|+.++|+|.|....
T Consensus         5 V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~   61 (91)
T 2kjp_A            5 ASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKE   61 (91)
T ss_dssp             CCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred             EEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            678899999999 9999999999999999877  578888875  488999999987644

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.91  E-value=1.4e-06  Score=92.27  Aligned_cols=74  Identities=26%  Similarity=0.416  Sum_probs=0.0

Q ss_pred             eEEEEEe--cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEe
Q psy9257         360 IGLRVCA--INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL  436 (530)
Q Consensus       360 LG~~V~~--~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL  436 (530)
                      +|+.+..  ...|++|..|.++|+|+++||+.||+|++|||+.+.++.+  +.++++...+ .+.|+|.|+++.+.+.|
T Consensus       372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~--l~~~l~~~~~-~v~l~v~R~g~~~~~~l  447 (448)
T 1ky9_A          372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAE--LRKVLDSKPS-VLALNIQRGDSTIYLLM  447 (448)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cceEeeccCCCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence            4666642  2368999999999999999999999999999999998765  6777766544 78899999887766654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.89  E-value=4.2e-05  Score=77.98  Aligned_cols=62  Identities=21%  Similarity=0.343  Sum_probs=52.1

Q ss_pred             cCc-EEEEccCCHHHHcCCCC-----------CCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchhhh
Q psy9257         450 KGQ-IVSLVKDSSAARNGLLV-----------NHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQHM  513 (530)
Q Consensus       450 ~Gv-V~sVv~gSpAarAGLr~-----------GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e~m  513 (530)
                      .|. |..|.++++|+++||+.           ||+|++|||++|.++  +++...|.  +.|++++|+|.|......+
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~  326 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKEKI  326 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEEEE
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEEEE
Confidence            354 88999999999999999           999999999999988  57888775  3578999999988654433

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.87  E-value=1.9e-05  Score=67.19  Aligned_cols=55  Identities=11%  Similarity=0.072  Sum_probs=44.3

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~  509 (530)
                      |....+.++|+++||+.||+|++|||+.|.++.  ++..++.  +.++.+.|+|.|...
T Consensus        41 V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEECSCTHHHHHHTCCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETTE
T ss_pred             EecCCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECCE
Confidence            444555667799999999999999999999995  4666665  467899999988753

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.84  E-value=1.7e-05  Score=67.80  Aligned_cols=54  Identities=28%  Similarity=0.314  Sum_probs=46.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~  509 (530)
                      |..|.++++|+++||+.||+|++|||+.+.++  .++...++ .++.+.|+|.|...
T Consensus        39 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~-~g~~v~l~v~R~g~   92 (112)
T 2p3w_A           39 VQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL-TESPLLLEVRRGND   92 (112)
T ss_dssp             EEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH-HCSSEEEEEEETTE
T ss_pred             EEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh-CCCeEEEEEEECCE
Confidence            78899999999999999999999999999876  56777774 46788999988753

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.81  E-value=2.2e-05  Score=78.96  Aligned_cols=68  Identities=21%  Similarity=0.325  Sum_probs=55.6

Q ss_pred             CCccceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257         441 SGHFGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY  510 (530)
Q Consensus       441 ~g~LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~  510 (530)
                      ...+|+....|. |..|.++++|+++||+.||+|++|||+++.++  +++...++  +.|+.++|+|.|....
T Consensus       235 ~~~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~  305 (318)
T 1te0_A          235 AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ  305 (318)
T ss_dssp             SSSSCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred             HHhccCCCCCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            344565544554 88999999999999999999999999999887  57888787  4688999999987643

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.81  E-value=7.4e-06  Score=68.63  Aligned_cols=56  Identities=16%  Similarity=0.304  Sum_probs=47.7

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCcchh
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTSMYQ  511 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~~~e  511 (530)
                      |..|.++|+|++ ||+.||+|++|||+++.++  .++..+++.  .|+.++|+|.|.....
T Consensus         9 V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~   66 (94)
T 2kl1_A            9 VMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRKQH   66 (94)
T ss_dssp             CCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTEEE
T ss_pred             EEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            667889999999 9999999999999999876  577777775  5889999999876443

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.73  E-value=8.5e-05  Score=76.83  Aligned_cols=68  Identities=16%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             Cccceeec------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCcc
Q psy9257         442 GHFGFHFN------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTSM  509 (530)
Q Consensus       442 g~LGfs~~------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~~  509 (530)
                      ..+|+.+.      ++. |..|.++++|+++||+.||+|++|||+++.++..+++..+++ ..|..++|+|.|...
T Consensus        85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            34777764      222 889999999999999999999999999999997777887776 467889999987654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.73  E-value=3.4e-05  Score=77.52  Aligned_cols=56  Identities=21%  Similarity=0.290  Sum_probs=48.8

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEe-Ccch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIP-TSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip-~~~~  510 (530)
                      |..|.++++|+++||+.||+|++|||+.+.++  .++...+.+  .|+.++|+|.| ....
T Consensus       246 V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g~~  304 (324)
T 1y8t_A          246 IVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSGGS  304 (324)
T ss_dssp             EEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred             EEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCCCE
Confidence            88999999999999999999999999999987  567777764  58899999998 6543

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.48  E-value=9.5e-05  Score=74.70  Aligned_cols=55  Identities=24%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      |.+|.++++|+++||+.||+|++|||+.+.++  +++...++. ++.+.|+|.|....
T Consensus       260 V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~-~~~v~l~v~R~g~~  314 (325)
T 1lcy_A          260 IHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRET  314 (325)
T ss_dssp             EEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT-CSSEEEEEEETTEE
T ss_pred             EEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC-CCeEEEEEEECCEE
Confidence            88999999999999999999999999999877  578777766 68899999987643

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.48  E-value=0.00015  Score=79.73  Aligned_cols=69  Identities=17%  Similarity=0.332  Sum_probs=55.4

Q ss_pred             CCccceeecc---C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchhh
Q psy9257         441 SGHFGFHFNK---G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQH  512 (530)
Q Consensus       441 ~g~LGfs~~~---G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e~  512 (530)
                      ...+|+.+..   | .|..|..+|+|+++||+.||+|++|||+.|. .  +++..+++  +.|+.|+|+|.|......
T Consensus       484 ~~~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~  558 (597)
T 4fgm_A          484 RVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-E--QSVKRILERYIPGDTVTIHAFRRDELMT  558 (597)
T ss_dssp             SCCCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-T--TTHHHHHTTCCTTCEEEEEEEETTEEEE
T ss_pred             ccccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-H--HHHHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            3468888752   3 3889999999999999999999999999994 3  45777776  468899999998765443

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.47  E-value=0.00016  Score=64.14  Aligned_cols=53  Identities=26%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~  509 (530)
                      |..|.++++|+++ |+.||+|++|||+.|.++  +++...++  +.++.+.|+| |...
T Consensus        29 V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           29 IDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             EEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             EEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            7889999999999 999999999999999987  56777776  4578999999 7654

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.16  E-value=0.00024  Score=74.64  Aligned_cols=54  Identities=22%  Similarity=0.244  Sum_probs=46.8

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~  509 (530)
                      |..|.++|||+++||+.||+|++|||+.|.++.   +..+++..|..++|++.|...
T Consensus        94 V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           94 ISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             EEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            889999999999999999999999999999884   555555578889999987654

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.05  E-value=8.9e-05  Score=74.91  Aligned_cols=54  Identities=24%  Similarity=0.455  Sum_probs=0.0

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~  509 (530)
                      |..|.++++|+++||+.||+|++|||+.+.++.  ++...++. ++.++|+|.|...
T Consensus       258 V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~--~~~~~l~~-~~~v~l~v~R~g~  311 (332)
T 3num_A          258 IIEVIPDTPAEAGGLKENDVIISINGQSVVSAN--DVSDVIKR-ESTLNMVVRRGNE  311 (332)
T ss_dssp             ---------------------------------------------------------
T ss_pred             EEEeccCCChHHcCCCCCCEEEEECCEECCCHH--HHHHHHhC-CCeEEEEEEECCE
Confidence            889999999999999999999999999998773  56666654 6678888877653

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0025  Score=69.53  Aligned_cols=57  Identities=12%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD  427 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR  427 (530)
                      .||+|..|.++++|+.+|++.||+|++|||+.|.++.+  +.+++++++++.+.|.+.+
T Consensus       415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~--l~~~l~~~k~~~l~~~~~~  471 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHH--LAHLIDMCKDKYLVFEFED  471 (539)
T ss_dssp             CCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHH--HHHHHHTCCSSEEEEEETT
T ss_pred             eEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHH--HHHHHHHcCCCeEEEEECC
Confidence            47999999999999999999999999999999999766  8999999888877776544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.50  E-value=0.0048  Score=70.02  Aligned_cols=64  Identities=16%  Similarity=0.223  Sum_probs=51.6

Q ss_pred             Cccceeec--c-C-cEEEEccC--------CHHHHcC--CCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEe
Q psy9257         442 GHFGFHFN--K-G-QIVSLVKD--------SSAARNG--LLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIP  506 (530)
Q Consensus       442 g~LGfs~~--~-G-vV~sVv~g--------SpAarAG--Lr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip  506 (530)
                      +.+|+.+.  + + .|..|.++        ++|+++|  |+ ||+|++|||+.+.++.  ++..+|+ +.|..++|+|.|
T Consensus       737 ~g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v~r  813 (1045)
T 1k32_A          737 GRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSG  813 (1045)
T ss_dssp             CBCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEEC
T ss_pred             ceecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEEEC
Confidence            35777764  2 2 38889887        9999999  99 9999999999999986  4666665 668899999988


Q ss_pred             Cc
Q psy9257         507 TS  508 (530)
Q Consensus       507 ~~  508 (530)
                      ..
T Consensus       814 ~~  815 (1045)
T 1k32_A          814 KG  815 (1045)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=87.18  E-value=0.04  Score=53.39  Aligned_cols=66  Identities=17%  Similarity=0.110  Sum_probs=40.4

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEE-----EeccCCCeeEE
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELV-----LCKDASGLIGL  362 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~-----L~K~s~G~LG~  362 (530)
                      ++.|+    +++++++|++++++++..|+..++...... +|+..|++||++.+.++.+.     -++..++|||+
T Consensus       169 ~~~i~----tda~i~~G~SGGPLv~~~G~vvGI~s~~~~-~~~~~g~~faIP~~~~~~~~~~l~~~g~v~r~~lGv  239 (239)
T 1l1j_A          169 VGLIQ----TDAAINPGNSGGPLLNIHGEVIGINTAIVN-PQEAVNLGFAIPINTVKKFLDTILTQKKVEKAYLGV  239 (239)
T ss_dssp             EEEEE----ESSCCCTTTTTSEEECSSSEEEEEECCCSC-CCSCCSCEEEEEHHHHHHHHGGGCC-----------
T ss_pred             CCEEE----ECCCCCCCCccHHhccCCCeEEEEEeeeec-CCCcCceEEEEEHHHHHHHHHHHHHCCCCccceeCc
Confidence            34566    789999999999998877777777554444 56678999999766655433     24566888885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	5e-23
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	2e-13
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-17
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-08
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-16
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	2e-09
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	3e-16
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	6e-15
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	3e-15
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	9e-15
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	1e-09
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	9e-14
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	2e-10
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	1e-13
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-11
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-13
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-13
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	8e-13
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	7e-12
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	8e-13
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	5e-11
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	9e-13
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	1e-08
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	2e-12
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	7e-11
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	4e-12
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	2e-08
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	4e-12
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	6e-11
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-11
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	4e-11
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-11
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-10
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-11
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-09
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-11
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-08
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	4e-11
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	1e-10
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	6e-11
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	2e-09
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	8e-11
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	7e-10
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	8e-11
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-06
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	9e-11
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-08
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	9e-11
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-10
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-10
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	2e-09
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	1e-10
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	1e-08
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-10
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-10
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	4e-06
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-10
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-08
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-10
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-09
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-10
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	8e-04
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	5e-10
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	6e-09
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	6e-10
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	2e-07
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	7e-10
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	1e-09
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	7e-10
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	4e-08
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	1e-09
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	2e-08
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-09
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-07
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-09
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	8e-08
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	2e-09
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	3e-07
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	2e-09
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-09
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-07
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-09
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-09
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	4e-09
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	7e-05
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-09
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-05
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	6e-09
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	6e-07
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-09
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	7e-09
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	4e-06
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	1e-08
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	1e-08
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	1e-08
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	4e-08
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	1e-08
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	3e-08
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	4e-08
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-06
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	9e-08
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-07
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-07
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	5e-07
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-07
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-05
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-07
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-07
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	1e-07
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	2e-05
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	2e-07
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	2e-06
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-07
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	3e-07
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-07
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	7e-07
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	6e-07
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	0.003
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-06
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	0.002
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	2e-06
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	0.001
d1k32a1	91	b.36.1.3 (A:763-853) Tricorn protease {Archaeon Th	0.004

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (226), Expect = 5e-23
 Identities = 48/82 (58%), Positives = 61/82 (74%)

Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           RE++LCKD  G IGLR+ +I+ G+FV LV+  SPASLVGLRFGDQ+L INGE  AG++  
Sbjct: 4   REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 63

Query: 408 QVHKILKAAPVNNIRVVIRDRP 429
           + HK+LK A    I + IRDRP
Sbjct: 64  KAHKVLKQAFGEKITMTIRDRP 85

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDK 487
           R V L +D  G  G           +  +  +S A+  GL     +L++NG N  G    
Sbjct: 4   REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 63

Query: 488 ELLEAM-EKGGSVLTLTL 504
           +  + + +  G  +T+T+
Sbjct: 64  KAHKVLKQAFGEKITMTI 81

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 432 RTVTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELL 490
            TV + R D     GF    G I SL++   A R G+ V H I+E+NG +VV    ++++
Sbjct: 2   TTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIV 61

Query: 491 EAMEKGGSVLTLTLIPTS 508
             +      + +  +P +
Sbjct: 62  HILSNAVGEIHMKTMPAA 79

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 347 IRELVLCK-DASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
           +  +++ + D    +G  V    +   +C + RG  A   G+R G +I+ ING++V    
Sbjct: 1   VTTVLIRRPDLRYQLGFSV----QNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATP 56

Query: 406 MKQVHKILKAAPVNNIRVVI 425
            +++  IL  A    I +  
Sbjct: 57  HEKIVHILSNAV-GEIHMKT 75

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 43/76 (56%), Positives = 60/76 (78%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
           RT+T+H+DS+GH GF F  G+I S+VKDSSAARNGLL  HNI E+NG NV+GLKD ++ +
Sbjct: 6   RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65

Query: 492 AMEKGGSVLTLTLIPT 507
            +   G+V+T+T++P 
Sbjct: 66  ILSTSGTVVTITIMPA 81

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           R + + KD++G +G           +  + + S A+  GL     I  ING+ V G    
Sbjct: 6   RTITMHKDSTGHVGFIFKNG----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDS 61

Query: 408 QVHKILKAAPVNNIRVVI 425
           Q+  IL  +    + + I
Sbjct: 62  QIADILSTSG-TVVTITI 78

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (176), Expect = 3e-16
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 428 RPLERTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
           R L R   L +  +G +GFH        GQ + LV   S A + GLL    ++EVNG NV
Sbjct: 1   RMLPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59

Query: 482 VGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
                ++++  +    + + L ++     + +
Sbjct: 60  EKETHQQVVSRIRAALNAVRLLVVDPETDEQL 91

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (167), Expect = 6e-15
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
           R   L K  +G    L       G ++ LVE GSPA   GL  GD+++ +NGE V     
Sbjct: 5   RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETH 64

Query: 407 KQVHKILKAAPVNNIRVVIRDR 428
           +QV   ++AA  N +R+++ D 
Sbjct: 65  QQVVSRIRAAL-NAVRLLVVDP 85

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 3e-15
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFG 390
           SS G   K        R + + K +  L G+ + +  + G++V  V  GS A   GL +G
Sbjct: 5   SSGGERRKDRPYVEEPRHVKVQKGSEPL-GISIVSGEKGGIYVSKVTVGSIAHQAGLEYG 63

Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR---DSSG 442
           DQ+L  NG  +     +Q   I+     + I ++ +  P    ++ H     SSG
Sbjct: 64  DQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQYNPHVHQLSSHSRSGPSSG 117

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.1 bits (166), Expect = 9e-15
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 19/97 (19%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------------------IVSLVKDSSAARNGLLVNH 471
           E+TV L +  S  FGF     +                   + S+ +   A R GL +  
Sbjct: 6   EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 65

Query: 472 NILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
            ++EVNG NVV +  ++++  + +GG+ L + ++  +
Sbjct: 66  FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 102

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
             ++  V+ G  A   GLR GD ++ +NG+ V     +QV  +++    N + V +
Sbjct: 44  LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKV 98

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 9e-14
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 347 IRELVLCKDASGLIGLRVCAINE-------GVFVCLVERGSPASLVG-LRFGDQILSING 398
             E+VLC D     GL++               VC +E  SPA   G L+ GD++LSING
Sbjct: 9   TTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSING 68

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIR 426
                  M++ +++L+ A     +VV+ 
Sbjct: 69  IATEDGTMEEANQLLRDAA-LAHKVVLE 95

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-----------IVSLVKDSSAARNGLL-VNHNILEVNG 478
              V L  D    FG     G            +  +  DS A R GLL V   +L +NG
Sbjct: 9   TTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSING 68

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
                   +E  + +        + L
Sbjct: 69  IATEDGTMEEANQLLRDAALAHKVVL 94

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 1e-13
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLLVNHN-ILEVNGANVVGL 484
            R V   +++    G      +     +  ++      R G L   + I E+NG +V   
Sbjct: 2   SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61

Query: 485 KDKELLEAMEKGGSVLTLTLIPTS 508
             ++L + + +    +T  ++P+ 
Sbjct: 62  TVEQLQKMLREMRGSITFKIVPSY 85

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 4e-11
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 348 RELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRF-GDQILSINGETVAGYN 405
           R +   K+    +G+ +         V  +  G      G    GD+I  ING +VA   
Sbjct: 3   RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62

Query: 406 MKQVHKILKAAPVNNIRVVIR 426
           ++Q+ K+L+     +I   I 
Sbjct: 63  VEQLQKMLREMR-GSITFKIV 82

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 434 VTLHRDSSGHFGFHFNKGQ---IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELL 490
           +T+ R   G FGF         + ++     A R GL     +L++N   V   K  EL 
Sbjct: 1   ITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELA 59

Query: 491 EAMEKGGSVLTLTL 504
             +    S + L +
Sbjct: 60  HEIRSCPSEIILLV 73

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 351 VLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVH 410
            + +   G  G  +C  +  V V  V+ G PA   GL+  D +L +N   V  +   ++ 
Sbjct: 2   TIPRGKDGF-GFTICC-DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELA 59

Query: 411 KILKAAPVNNIRVVIRDRPLERTV 434
             +++ P + I +++      R V
Sbjct: 60  HEIRSCP-SEIILLVW-----RMV 77

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (151), Expect = 8e-13
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLVKDSSAA-RNGLLVNHN-ILEVNGANVV 482
            R VT+ +  +G  G             ++S +    AA +   L   + IL VNG ++ 
Sbjct: 5   RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
                E ++A++K G  + L +
Sbjct: 65  SATHDEAVQALKKTGKEVVLEV 86

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (143), Expect = 7e-12
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 348 RELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
           R + + K  +G +G+ +    E    + +  + +G  A     L  GD ILS+NGE ++ 
Sbjct: 6   RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65

Query: 404 YNMKQVHKILKAAPVNNIRVVIR 426
               +  + LK      + + ++
Sbjct: 66  ATHDEAVQALKKTG-KEVVLEVK 87

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 8e-13
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 346 GIRELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPA--SLVGLRFGDQILSINGET 400
            +  + +  D +G  G  V    +    V V  V  G+PA   +  L  GDQ++ ING  
Sbjct: 8   NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD 67

Query: 401 VAGYNMKQVHKILKAAPVNN---IRVVIRDRPLERTV 434
           +A +   QV   +KA+   +   + +++R   +   V
Sbjct: 68  IAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVV 104

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 5e-11
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLVKDSSAARN---GLLVNHNILEVNGANVV 482
             + +  D +G FGF+           IVS V   + A      L     ++ +NG ++ 
Sbjct: 10  VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 69

Query: 483 GLKDKE----LLEAMEKGGSVLTLTLIPTSMYQ 511
                +    +  + E+    L L + P ++Y 
Sbjct: 70  EHTHDQVVLFIKASCERHSGELMLLVRPNAVYD 102

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (151), Expect = 9e-13
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVGLRF 389
           SSGS           R + L K     +G  +        G+F+  V   S A   GL+ 
Sbjct: 2   SSGSSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQE 61

Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           GDQ+L++N          +  +ILK A   ++RV     P
Sbjct: 62  GDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSGP 101

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 429 PLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANV 481
            L R VTL +      GF+   G+       I  ++ DS A R GL     +L VN  + 
Sbjct: 14  FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDF 73

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
             ++  + +E ++    + ++ +
Sbjct: 74  QDIEHSKAVEILKTAREI-SMRV 95

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------------IVSLVKDSSAARNGLLVNHNILEVN 477
           E T+T+ R + G  G     G+             I  + ++  AAR G+ V   +LEVN
Sbjct: 9   ELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 67

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G  + G +  E +EA+   G+ + + +
Sbjct: 68  GVALQGAEHHEAVEALRGAGTAVQMRV 94

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 7e-11
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 341 AYVTNGIRELVLCKDASGLIGLRVCA---------INEGVFVCLVERGSPASLVGLRFGD 391
           A +      L + +   GL G+ +            +EG+F+  V    PA+  G+R GD
Sbjct: 3   ARIEEEELTLTILRQTGGL-GISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGD 61

Query: 392 QILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           ++L +NG  + G    +  + L+ A    +++ + 
Sbjct: 62  KLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVW 95

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.8 bits (147), Expect = 4e-12
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 3/113 (2%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
           SSGS    +   +  R +    +   L G  +   N  V V  ++    ASL G + GD 
Sbjct: 2   SSGSSGSASKRWSPPRGIHFTVEEGDL-GFTLRG-NTPVQVHFLDPHCSASLAGAKEGDY 59

Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFG 445
           I+SI G       + +V K+LK+     + + +    L+ T ++H  S    G
Sbjct: 60  IVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV-SLLDSTSSMHNKSGPSSG 111

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 432 RTVTLHRDSSGHFGFHFNKG---QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKE 488
           R +    +     GF        Q+  L    SA+  G      I+ + G +   L   E
Sbjct: 17  RGIHFTVEEGD-LGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSE 75

Query: 489 LLEAM-EKGGSVLTLTLI 505
           +++ +   GG  + + ++
Sbjct: 76  VMKLLKSFGGEEVEMKVV 93

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 342 YVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASL-VGLRFGDQILSINGET 400
           Y    ++ + + K     +G  V    + V +  + +G  A     L  GD++L ING  
Sbjct: 14  YGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIE 73

Query: 401 VAGYNMKQVHKILKAAPVNNIRVVI 425
           + G ++ +V  +L       +  V+
Sbjct: 74  IRGKDVNEVFDLLSDMH-GTLTFVL 97

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (137), Expect = 6e-11
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLLVNHN-ILEVNGANVVGLKD 486
           + V + +      G           I  +VK  +A ++GLL   + +LE+NG  + G   
Sbjct: 20  KIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV 79

Query: 487 KELLEAMEKGGSVLTLTLIPT 507
            E+ + +      LT  LIP+
Sbjct: 80  NEVFDLLSDMHGTLTFVLIPS 100

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 343 VTNGIRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
           +    R +V+ + ++GL   +      EG+F+  +  G PA L G LR GDQILS+NG  
Sbjct: 6   IPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVD 65

Query: 401 VAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
           +   + +Q    LK A    + ++ + +P E
Sbjct: 66  LRNASHEQAAIALKNAG-QTVTIIAQYKPEE 95

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.6 bits (139), Expect = 4e-11
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 427 DRPLE-RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNG 478
           D P E R + +HR S+G  GF+   G+      I  ++    A  +G L     IL VNG
Sbjct: 5   DIPREPRRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG 63

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++     ++   A++  G  +T+  
Sbjct: 64  VDLRNASHEQAAIALKNAGQTVTIIA 89

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 12/86 (13%)

Query: 431 ERTVTLHRDSSGHFGF------------HFNKGQIVSLVKDSSAARNGLLVNHNILEVNG 478
           + TVTL +DS   FG             +     ++S V     A   L  N  ++ VNG
Sbjct: 8   QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNG 67

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
             +  +     ++ + K G +  + +
Sbjct: 68  TPMEDVLHSFAVQQLRKSGKIAAIVV 93

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 348 RELVLCKDASGLIGLRVC---------AINEGVFVCLVERGSPASLVGLRFGDQILSING 398
             + L KD+    G+ V               + +  V  G PA    L+  D+++ +NG
Sbjct: 9   YTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNG 67

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
             +         + L+ +      +V++ RP
Sbjct: 68  TPMEDVLHSFAVQQLRKSG-KIAAIVVK-RP 96

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVG 386
           SSGS       +  +  + L +  SGL G+ +           G+++  +  GSPA+  G
Sbjct: 2   SSGS-------SGYVFTVELERGPSGL-GMGLIDGMHTHLGAPGLYIQTLLPGSPAAADG 53

Query: 387 -LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD-SSG 442
            L  GD+IL +NG ++ G    +   +++      +R ++    +E    +H   SSG
Sbjct: 54  RLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVAKSDVETAKKIHSGPSSG 110

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLLVNHN-ILEVNGAN 480
            TV L R  SG  G     G           I +L+  S AA +G L   + ILEVNG++
Sbjct: 10  FTVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
           ++GL     ++ +  GG  +   +
Sbjct: 69  LLGLGYLRAVDLIRHGGKKMRFLV 92

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 345 NGIRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           +GI   +L K+    +G  +       N+ + V  V     AS  G ++ G+++LSING+
Sbjct: 7   DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK 66

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           ++ G        IL+ A      V++  + 
Sbjct: 67  SLKGTTHHDALAILRQAREPRQAVIVTRKL 96

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNGLLVNHN-ILEVNGANVV 482
               LH++     GF    G         +  +  +  A++ G +   N +L +NG ++ 
Sbjct: 10  HVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLK 69

Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
           G    + L  + +        ++
Sbjct: 70  GTTHHDALAILRQAREPRQAVIV 92

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-------------IVSLVKDSSAARNGLLVNHN-ILEVN 477
             VTL +     FG    +G+             I  +V DS A   G L   + IL +N
Sbjct: 5   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 64

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G +V    ++ +++ +++    + L +
Sbjct: 65  GKDVRNSTEQAVIDLIKEADFKIELEI 91

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 347 IRELVLCKDASGLIGLRVCAINE---------GVFVCLVERGSPASLVG-LRFGDQILSI 396
           I  + L K      G+ +              G+F+  +   SPA L G L+ GD+ILS+
Sbjct: 4   IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 63

Query: 397 NGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           NG+ V     + V  ++K A    I + I+
Sbjct: 64  NGKDVRNSTEQAVIDLIKEAD-FKIELEIQ 92

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 6e-11
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 347 IRELVLCKDASGL--------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
           +  + L KD  GL        +G        G+FV  V  G  A   G ++  DQI+ ++
Sbjct: 3   LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 62

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVI-RDRP 429
           G ++ G        +L+     N+R VI R++P
Sbjct: 63  GISLVGVTQNFAATVLRNTK-GNVRFVIGREKP 94

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 15/86 (17%)

Query: 433 TVTLHRDSSGHFGFHFNKGQ-------------IVSLVKDSSAARNGLL-VNHNILEVNG 478
            V L +D  G  G                    + ++ +  +A R+G + VN  I+EV+G
Sbjct: 5   PVELEKDEDG-LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG 63

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            ++VG+        +      +   +
Sbjct: 64  ISLVGVTQNFAATVLRNTKGNVRFVI 89

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 8e-11
 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 348 RELVLCKDASGLIGLRVC------------AINEGVFVCLVERGSPASLVG-LRFGDQIL 394
           R + L ++ S  +G+ +              +  G+F+  V   SPA   G L+ GD+I+
Sbjct: 3   RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 62

Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
            ++G  +   + +Q  + ++ A  N +  +++
Sbjct: 63  EVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 93

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 17/90 (18%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLL-VNHNIL 474
           R V L R+ S   G     G+                I  +++DS A +NG L     I+
Sbjct: 3   RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 62

Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           EV+G ++     ++ +EA+ K G+ +   +
Sbjct: 63  EVDGMDLRDASHEQAVEAIRKAGNPVVFMV 92

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (137), Expect = 8e-11
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 347 IRELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVGL-RFGDQILSINGETVAG 403
           +  + L K   G +G  V        V +  + RG  A   GL + GD IL++N   +  
Sbjct: 2   VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
            +     ++L+        V+I   P   T  L    +G
Sbjct: 62  LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 100

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLVKDSSAARNGLLVNHN--ILEVNGANVVGL 484
            +V L +   G  GF           I+S +    AA    L+     IL VN   +V L
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62

Query: 485 KDKELLEAMEKGGSVLTLTLI 505
                LE +    S   + LI
Sbjct: 63  SYDSALEVLRGIASETHVVLI 83

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 9e-11
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 348 RELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVGLRFGDQILSINGETVAGY 404
           +++ +    S  +G  + +      G+F+  V+ GS ++ VGL  GDQI+ +NG   +  
Sbjct: 10  KKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNL 69

Query: 405 NMKQVHKILKAAPVNNIRVVIRD 427
           + K+   +LK++    I +V   
Sbjct: 70  DHKEAVNVLKSSRSLTISIVAAA 92

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVG 483
           E+ V +    S   G   + G        I  +   S +A  GL +   I+EVNG +   
Sbjct: 9   EKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSN 68

Query: 484 LKDKELLEAMEKGGSVLTLTLIP 506
           L  KE +  ++   S+ T++++ 
Sbjct: 69  LDHKEAVNVLKSSRSL-TISIVA 90

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 9e-11
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 347 IRELVLCKDA-SGLIGLRVC--AINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
           + ++ L KD+     G  V    + +GV+V  +    P  L GL+  D++L +N      
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRD 66

Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRP 429
           ++   V  ++  +  N + +VI   P
Sbjct: 67  FDCCLVVPLIAESG-NKLDLVISRNP 91

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 429 PLE-RTVTLHRDS-SGHFGFHFNKGQ------IVSLVKDSSAARNGLLVNHNILEVNGAN 480
           P+E   VTL++DS    FGF    G       + ++         GL     +L+VN   
Sbjct: 4   PVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVR 63

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
                   ++  + + G+ L L +
Sbjct: 64  TRDFDCCLVVPLIAESGNKLDLVI 87

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 429 PLERTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLL-VNHNILEVN 477
           P  +++TL R   G  GF    G           + ++    +A+ +G L     I+ VN
Sbjct: 1   PQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN 59

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTLI 505
           G ++ G+  +E +  +++    +TL ++
Sbjct: 60  GQSLEGVTHEEAVAILKRTKGTVTLMVL 87

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 347 IRELVLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVGL-RFGDQILSINGE 399
            + + L +   GL G  +         +  ++V  V     AS  G  + GDQI+++NG+
Sbjct: 3   CKSITLERGPDGL-GFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 61

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVI 425
           ++ G   ++   ILK      + +++
Sbjct: 62  SLEGVTHEEAVAILKRTK-GTVTLMV 86

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 348 RELVLCKDASGLIGLRVCAINE------GVFVCLVERGSPASLVG-LRFGDQILSINGET 400
           +   + KD+  L+GL+V           G F+  V++GS A +VG LR GD++L  NG+ 
Sbjct: 20  KRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKP 79

Query: 401 VAGYNMKQVHKILKAAPVNN-IRVVIRDRP 429
           + G   ++V+ I+  +     + +++  RP
Sbjct: 80  LPGATNEEVYNIILESKSEPQVEIIVS-RP 108

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 424 VIRDRPLERTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLLVNHN- 472
           +I    L +  T+ +DS    G     G+          I  + K S A   G L   + 
Sbjct: 12  LIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDE 71

Query: 473 ILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
           +LE NG  + G  ++E+   + +  S   + +I
Sbjct: 72  VLEWNGKPLPGATNEEVYNIILESKSEPQVEII 104

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVGL-RFGDQILSING 398
           I E+ L K   GL       IG +    +  +++  +  G  A   G  + GD++L++N 
Sbjct: 2   IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 61

Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
             +     ++    LK    + + + +  +P
Sbjct: 62  TNLQDVRHEEAVASLKNTS-DMVYLKVA-KP 90

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-------AINEGVFVCLVERGSPASLV 385
           SSGS      V     E+VL  D     G+++         ++    +  +E  SPA   
Sbjct: 2   SSGSSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERC 61

Query: 386 GL-RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
           G+ + GD++++ING        ++ +++L+ + + +   +  +  +  +V
Sbjct: 62  GVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESV 111

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 12/85 (14%)

Query: 432 RTVTLHRDSSGHFGFHFNKG-----------QIVSLVKDSSAARNGLLVNHN-ILEVNGA 479
             V L  D    FG                  I  +  DS A R G+L   + ++ +NG 
Sbjct: 17  TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI 76

Query: 480 NVVGLKDKELLEAMEKGGSVLTLTL 504
                  +E  + +        +TL
Sbjct: 77  PTEDSTFEEANQLLRDSSITSKVTL 101

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVGLRF 389
           SSGS  +   V+     L   K   GL G  +   +E   G++V LVE GS A   GLR 
Sbjct: 2   SSGSSGEVRLVS-----LRRAKAHEGL-GFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRV 55

Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
           GDQIL +N +++A     +  K LK +    + V    R
Sbjct: 56  GDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGR 94

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 432 RTVTLHRDSSGH-FGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
           R V+L R  +    GF          G  VSLV   S A + GL V   IL VN  ++  
Sbjct: 10  RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLAR 69

Query: 484 LKDKELLEAMEKGGSVLTLTLI 505
           +   E ++A+ KG   L L++ 
Sbjct: 70  VTHAEAVKAL-KGSKKLVLSVY 90

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
           E  V L R  SG FGF    G        I +++   SA R+G L     ++ V+G  V 
Sbjct: 10  ELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA 68

Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
           G   + +++ M        + L 
Sbjct: 69  GKTHRYVIDLMHHAARNGQVNLT 91

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEG---VFVCLVERGSPASLVG-L 387
           SS  SG K+        ++ L +  SG  G R+   +E    + +  V     A   G L
Sbjct: 2   SSGSSGYKE-------LDVHLRRMESGF-GFRILGGDEPGQPILIGAVIAMGSADRDGRL 53

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNN-IRVVIRDRPL 430
             GD+++ ++G  VAG   + V  ++  A  N  + + +R + L
Sbjct: 54  HPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 3e-10
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 347 IRELVLCKDASGL-IGLRVCAINE-----GVFVCLVERGSPASL-VGLRFGDQILSINGE 399
           + E+ L +  S   +GL VC   +     G+++  ++  S A+    +R GD+I+ ING 
Sbjct: 20  LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGI 79

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
            V   N ++   +L +    N  ++I    L+       D SG
Sbjct: 80  EVQ--NREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDSG 120

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 432 RTVTLHR-DSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLLV-NHNILEVNGAN 480
             V L+R +S    G                I  +  +S AA++G +     I+++NG  
Sbjct: 21  EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80

Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
           V   ++   L   E+  +  +L +
Sbjct: 81  VQNREEAVALLTSEENKNF-SLLI 103

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           N  + +  +  GS A+   L  GD +++I+G         +    +K+A   N+ + ++
Sbjct: 24  NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQ 81

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 6e-09
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 430 LERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
           +  +VTL       +GF       FN    +S +   S AA++ L     ++ ++G N  
Sbjct: 1   MAYSVTLTGPGP--WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
            +   E    ++     L+LTL
Sbjct: 59  TMTHLEAQNKIKSASYNLSLTL 80

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 344 TNGIRELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
           ++G   + L K  S  +G+ + +       + + +  +++GS A   G L  GD++L+I+
Sbjct: 8   SSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAID 67

Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIR 426
              +   +M+   +IL+    + +++ IR
Sbjct: 68  NIRLDSCSMEDAVQILQQCE-DLVKLKIR 95

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
             V L +  S   G   +            I  + K S A R G L +   +L ++   +
Sbjct: 12  FHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRL 71

Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
                ++ ++ +++   ++ L +
Sbjct: 72  DSCSMEDAVQILQQCEDLVKLKI 94

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (129), Expect = 7e-10
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVVG 483
            TV L R      G   +  +       I SL K   A R G + +   IL +N +++ G
Sbjct: 5   YTVELKRYGGP-LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 63

Query: 484 LKDKELLEAMEKGGSVLTLTLIP 506
               E +  ++  G  +TL +  
Sbjct: 64  KPLSEAIHLLQMAGETVTLKIKK 86

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 347 IRELVLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
           I  + L +    L G+ +       + + +  + +G  A   G +  GD+IL+IN  ++ 
Sbjct: 4   IYTVELKRYGGPL-GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 62

Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRP 429
           G  + +   +L+ A    + + I+ + 
Sbjct: 63  GKPLSEAIHLLQMAG-ETVTLKIKKQT 88

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 7e-10
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 349 ELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
           ++ + K    ++G+ +       I   V +  +  G PA   G L  GDQI+SING ++ 
Sbjct: 1   DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLV 60

Query: 403 GYNMKQVHKILKAAPVNNIRVVIR 426
           G  +     I+K    N  RV + 
Sbjct: 61  GLPLSTCQSIIKGLK-NQSRVKLN 83

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 434 VTLHRDSSGHFGFHFNKG---------QIVSLVKDSSAARNGLL-VNHNILEVNGANVVG 483
           V + +      G    +           I +++    A ++G L +   I+ +NG ++VG
Sbjct: 2   VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 61

Query: 484 LKDKELLEAME--KGGSVLTLTLI 505
           L        ++  K  S + L ++
Sbjct: 62  LPLSTCQSIIKGLKNQSRVKLNIV 85

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 347 IRELVLCKDASGLIGLRVC--------AINEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
             E+ L +  SGL G  +           +  +F+  +  G  A+  G LR  D IL +N
Sbjct: 2   YEEITLERGNSGL-GFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 60

Query: 398 GETVAGYNMKQVHKILKAAPVNNIR-VVIRDRP 429
              V         + LK A  + +R  V+R +P
Sbjct: 61  EVDVREVTHSAAVEALKEAG-SIVRLYVMRRKP 92

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLLVNHN-ILEVNG 478
             +TL R +SG  GF    G             I  ++   +AA++G L  ++ IL VN 
Sbjct: 3   EEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 61

Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
            +V  +     +EA+++ GS++ L +
Sbjct: 62  VDVREVTHSAAVEALKEAGSIVRLYV 87

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 18/95 (18%)

Query: 432 RTVTLHRDSSGH-FGFHFNKGQ----------------IVSLVKDSSAARNGLLVNHNIL 474
           R V L +  S    GF+   G                 I  LV    A   GLL  ++ +
Sbjct: 4   RRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEV 63

Query: 475 -EVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
            EVNG  V G    ++ + M    S L +T+ P +
Sbjct: 64  IEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 98

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 368 NEGVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
             G+F+  +  G  A     L   D+++ +NG  VAG  + QV  ++ A   +N+ + ++
Sbjct: 37  QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANS-SNLIITVK 95

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 332 SSSGSGLKKAYVT----NGIRELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASL 384
           SS  SG +++ +        +++ L       +GL +    E   G+++  V+ GS A  
Sbjct: 2   SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG 61

Query: 385 VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
            GL+ GDQIL +NG +       +  ++LK++    + V    R      T+     
Sbjct: 62  SGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHARTTVDETKW 118

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 8e-08
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
           E+ V L        G        +  G  ++ V   S A  +GL V   ILEVNG + + 
Sbjct: 21  EKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLN 80

Query: 484 LKDKELLEAMEKGGSVLTLTLIPTSMYQH 512
           +   E +  + K    L LT+       H
Sbjct: 81  ILHDEAVRLL-KSSRHLILTVKDVGRLPH 108

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
           G ++  +  G  A   G L  G Q+L  NG  +     ++V  I+         + +R  
Sbjct: 50  GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVR-- 106

Query: 429 PLERTVTLHRDSSG 442
                + +   SSG
Sbjct: 107 ---LDLNMSGPSSG 117

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 13/88 (14%)

Query: 430 LERTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLLVNHN-ILEV 476
           + R    H  S    G     G+            I  ++   SA + G L+    +LE 
Sbjct: 18  ITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77

Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
           NG  +     +E+   + +      + +
Sbjct: 78  NGIPLTSKTYEEVQSIISQQSGEAEICV 105

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 357 SGLIG--LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
           +G+ G  +     ++GV V  V+ G+PA+ +GL+ GD I+  N + V   N+ ++ K+L 
Sbjct: 11  NGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLD 68

Query: 415 AAPVNNIRV-VIRDRPLERTVTL 436
           + P + + + + R    + T+ L
Sbjct: 69  SKP-SVLALNIQRG---DSTIYL 87

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 332 SSSGSGLKKAY---VTNGIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLV 385
           SS  SGL       +        L K   G  G  +      +E + V  V    PA+  
Sbjct: 2   SSGSSGLFTRDASQLKGTFLSTTLKKSNMGF-GFTIIGGDEPDEFLQVKSVIPDGPAAQD 60

Query: 386 G-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI--RVVIRDRPLERT 433
           G +  GD I+ IN   V G+    V K+ ++ P+      V+ R  PL   
Sbjct: 61  GKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFD 111

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVVG 483
            + TL + + G FGF    G        + S++ D  AA++G +     I+ +N   V+G
Sbjct: 21  LSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLG 79

Query: 484 LKDKELLEAME--KGGSVLTLTL 504
               ++++  +    G  + L L
Sbjct: 80  HTHADVVKLFQSVPIGQSVNLVL 102

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
             TV + + + G FGF    G+       ++ L +D  A RNG + V   I+E+NG +  
Sbjct: 12  YFTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTR 70

Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
            +     +E ++ GG  + L L
Sbjct: 71  DMTHARAIELIKSGGRRVRLLL 92

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 7e-09
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVGL- 387
           SS  SG    Y T     + + K A G  G  +    E    ++V  +    PA   G  
Sbjct: 2   SSGSSGQDFDYFT-----VDMEKGAKGF-GFSIRGGREYKMDLYVLRLAEDGPAIRNGRM 55

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           R GDQI+ INGE+       +  +++K+     +R++++
Sbjct: 56  RVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLK 93

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 329 APLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA------INEGVFVCLVERGSPA 382
           A  S++     ++     +  + L K ++GL G  +         ++ + +  + +G+ +
Sbjct: 12  ASASAASDVSVESTAEATVCTVTLEKMSAGL-GFSLEGGKGSLHGDKPLTINRIFKGAAS 70

Query: 383 SLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
                ++ GD+IL + G  + G    +   I+KA P   + +VIR + L+   T     S
Sbjct: 71  EQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGDS 130

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLLVN-HNILEVNGAN 480
            TVTL + S+G  GF    G+          I  + K +++ ++  +     IL++ G  
Sbjct: 31  CTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTA 89

Query: 481 VVGLKDKELLEAM-EKGGSVLTLTL 504
           + GL   E    +       +T+ +
Sbjct: 90  MQGLTRFEAWNIIKALPDGPVTIVI 114

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE----GVFVCLVERGSPASLVG-L 387
           SSGS             + + K A+ L G+ +            +  ++RG  A   G L
Sbjct: 2   SSGSS---------GTLVRVKKSAATL-GIAIEGGANTRQPLPRIVTIQRGGSAHNCGQL 51

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
           + G  IL +NG T+ G   ++  +I+  A     R  I 
Sbjct: 52  KVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYID 90

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
             V + + ++   G     G         IV++ +  SA   G L V H ILEVNG  + 
Sbjct: 8   TLVRVKKSAAT-LGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLR 66

Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
           G + +E    + +         I
Sbjct: 67  GKEHREAARIIAEAFKTKDRDYI 89

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (122), Expect = 6e-09
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 351 VLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           V     +   G R+      +  + V  V     A    LR GD I++ING++       
Sbjct: 10  VDVAGPAPW-GFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHA 68

Query: 408 QVHKILKAAPVNNIRVVIR 426
           +    ++ +  + +R+ + 
Sbjct: 69  EAQSKIRQSA-SPLRLQLD 86

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGL 484
             +T+       +GF  + G+       +  + +   A    L     I+ +NG +   +
Sbjct: 6   SGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENM 65

Query: 485 KDKELLEAMEKGGSVLTLTL 504
              E    + +  S L L L
Sbjct: 66  LHAEAQSKIRQSASPLRLQL 85

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 7e-09
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
           SSGS  +   +T     L + K A G  G  +     G  V   +        GL  GD 
Sbjct: 2   SSGSSGQAELMT-----LTIVKGAQGF-GFTIADSPTGQRV--KQILDIQGCPGLCEGDL 53

Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNN-IRVVIR 426
           I+ IN + V   +  +V  ILK  P+ +   ++I 
Sbjct: 54  IVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIH 88

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (122), Expect = 7e-09
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 347 IRELVLCKDAS---GLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
            R + + K+      ++G         V++  V  G      G L+ GDQ++SIN E++ 
Sbjct: 9   FRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 68

Query: 403 GYNMKQVHKILKAAPVNNIRVV 424
           G + ++   I+  A + +    
Sbjct: 69  GVSFEEAKSIITRAKLRSESPW 90

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 425 IRDRPLERTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLL-VNHNIL 474
           +   P  R +T+ +++    G     G          I  ++      ++G L     ++
Sbjct: 3   LDRDPAFRVITVTKETG--LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLV 60

Query: 475 EVNGANVVGLKDKE----LLEAMEKGGSVLTLTLI 505
            +N  +++G+  +E    +  A  +  S   +  I
Sbjct: 61  SINKESMIGVSFEEAKSIITRAKLRSESPWEIAFI 95

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 360 IGLRVCAINE---GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
           +GL +         V V     G PA   G R GD I++++G  V G ++  V  +L+  
Sbjct: 7   VGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGE 66

Query: 417 PVNNIRVVIRDRPLE----RTVTLHR 438
             + + VV+   P      RT+ L R
Sbjct: 67  ADSQVEVVLH-APGAPSNTRTLQLTR 91

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 346 GIRELVLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVGLRFGDQILSINGETVA 402
           G+  L L       + LR  +   +  GV +  V  GSPA   GLR GD IL+I  + V 
Sbjct: 5   GVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ 64

Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT 435
             N + V++ ++      +++      L   VT
Sbjct: 65  --NAEDVYEAVRTQSQLAVQIRRGRETLTLYVT 95

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 347 IRELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
           I  + L  +    +G+ +        + G+++  + +G   +  G +  GD +L +N   
Sbjct: 2   IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDIN 61

Query: 401 VAGYNMKQVHKILKAAPVNNIRVVI 425
               +     ++L+        +V+
Sbjct: 62  FENMSNDDAVRVLRDIVHKPGPIVL 86

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
            TVTL+ +     G                I S++K  + A +G +     +L+VN  N 
Sbjct: 3   ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINF 62

Query: 482 VGLKDKE----LLEAMEKGGSVLTLTL 504
             + + +    L + + K G +  LT+
Sbjct: 63  ENMSNDDAVRVLRDIVHKPGPI-VLTV 88

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 341 AYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
               N + +  L     GL GL V      + +  +     A+  G L+ GD ++S+   
Sbjct: 22  VSSLNKVIQTKLTVGNLGL-GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHA 80

Query: 400 TVAGYNMKQVHKILKAAPVNN-IRVVIR--DRPLERTVTLHRDSSG 442
            V GY +++  K+L+   +   +++        + +       SSG
Sbjct: 81  NVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSSG 126

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 349 ELVLCKDASGLIGLRVCA----INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
            L+  K    L  L +          V V  V  G  A   G +  GD+I++ING+ V  
Sbjct: 20  RLLRIKKEGSL-DLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTD 78

Query: 404 YNMKQVHKILKAAPV---NNIRVVIRDRP 429
           Y + +    L+ A     + I +V+   P
Sbjct: 79  YTLAEAEAALQKAWNQGGDWIDLVVAVCP 107

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE----GVFVCLVERGSPASLVG-L 387
           SSGS        +G   + + K     +G+ +   +      + +  ++  S     G L
Sbjct: 2   SSGSSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGAL 61

Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
             GD ILSI+G ++   ++ +  K+L +     +R+ I   P
Sbjct: 62  HPGDHILSIDGTSMEHCSLLEATKLLASIS-EKVRLEILPVP 102

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNGLLVNHN-ILEVNGANV 481
              V + +      G               I  +   S   R+G L   + IL ++G ++
Sbjct: 16  PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75

Query: 482 VGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMS 518
                 E  + +      + L ++P    Q  ++  S
Sbjct: 76  EHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSS 112

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (114), Expect = 9e-08
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 347 IRELVLCKDASGL----------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILS 395
             E+ L K    L           G+     + G++V  +     A   G +  GD++L+
Sbjct: 5   TFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLA 64

Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL 430
           +NG ++ G   KQ  + L+      + +++    +
Sbjct: 65  VNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQV 98

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 17/89 (19%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------------IVSLVKDSSAARNGLL-VNHNILE 475
             V L +      G                      + +++   +A  +G +     +L 
Sbjct: 6   FEVELAKTDGS-LGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLA 64

Query: 476 VNGANVVGLKDKELLEAMEKGGSVLTLTL 504
           VNG ++ G   K+ +E +   G V+ L L
Sbjct: 65  VNGVSLEGATHKQAVETLRNTGQVVHLLL 93

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 20/107 (18%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPAS 383
           SSGS        +G     L +   GL G  +          A + G+FV  +  G  A 
Sbjct: 2   SSGS--------SGRHVACLARSERGL-GFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAH 52

Query: 384 LVGLRF-GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
             G    GD++LSING  V          +L AA    I +++    
Sbjct: 53  RAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALLLEREA 98

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ-------------IVSLVKDSSAARNGLL-VNHNILEVN 477
               L R   G  GF    G+             +  + +  +A R G L V   +L +N
Sbjct: 9   HVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN 67

Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
           G +V   +    +  +      + L L
Sbjct: 68  GVDVTEARHDHAVSLLTAASPTIALLL 94

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ--------------IVSLVKDSSAARNGLLVNHN-ILEV 476
             V +HR  +  FGF                    I  ++  S A R   L   + IL V
Sbjct: 12  SDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71

Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
           NG +++ +   ++++ ++  G  +TL +IP
Sbjct: 72  NGQSIINMPHADIVKLIKDAGLSVTLRIIP 101

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 347 IRELVLCKDASGLIGLRVCAINE----------GVFVCLVERGSPASL-VGLRFGDQILS 395
             ++V+ +  +   G  + +                +  +  GSPA     L+ GD+IL+
Sbjct: 11  TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70

Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
           +NG+++       + K++K A   ++ + I  +    + +    SSG
Sbjct: 71  VNGQSIINMPHADIVKLIKDAG-LSVTLRIIPQEELNSPS--GPSSG 114

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 20/110 (18%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC------------AINEGVFVCLVERGS 380
           SSGS         G+REL + K     +G+ +               +EG+F+  V    
Sbjct: 2   SSGSS------GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTG 55

Query: 381 PASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
            A   G LR G ++L +N +++ G    +  ++L++   + + V++ D  
Sbjct: 56  AAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDGF 104

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 17/93 (18%)

Query: 429 PLERTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLLVNHN 472
           P  R + + +      G     G                 I  +    +A R+G L    
Sbjct: 8   PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67

Query: 473 -ILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
            +LEVN  +++GL   E ++ +   G  LT+ +
Sbjct: 68  RLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI-R 426
           N  + +  ++ G  AS   +R GD +LSI+G +  G    +    +KA    ++ + + R
Sbjct: 28  NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQR 86

Query: 427 DRPLERTVTLHRD-SSG 442
                ++  +    SSG
Sbjct: 87  ASAAAKSEPVSSGPSSG 103

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
            +V+L   +   +GF       FN    +S +KD   A    + +   +L ++G +  G+
Sbjct: 7   GSVSLVGPAP--WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGM 64

Query: 485 KDKELLEAMEKGGSVLTLTL 504
              E    ++     L +TL
Sbjct: 65  THLEAQNKIKACTGSLNMTL 84

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
           ++G+FV  V+   PAS   L+ GD+I+  NG +       Q   +LK    N + ++I  
Sbjct: 42  DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIV- 98

Query: 428 RPL 430
           R +
Sbjct: 99  REV 101

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 14/88 (15%)

Query: 431 ERTVTLHRDSSGHFGFHF--------------NKGQIVSLVKDSSAARNGLLVNHNILEV 476
           ++ + +  +     GF                + G  V+ V+    A   L     I++ 
Sbjct: 10  KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQA 69

Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
           NG + + ++  + +  ++   + + L +
Sbjct: 70  NGYSFINIEHGQAVSLLKTFQNTVELII 97

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 347 IRELVLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
           I  + L K  +G+ GL + A         G++V  V +G  A + G L  GDQ+LS++G 
Sbjct: 5   IITVTLKKQ-NGM-GLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 62

Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
           ++ G + ++  +++     + + + +  +
Sbjct: 63  SLVGLSQERAAELMTRTS-SVVTLEVAKQ 90

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 360 IGLRVCAINE--GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
           +G++V    +  G  +  V  G  A+  G+  G  +  ++   +   +   V  +   AP
Sbjct: 5   LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADAL-VAAVRSKAP 63

Query: 418 VNNIRVVIRDR---PLERTVTL 436
              + +  +D         VTL
Sbjct: 64  GATVALTFQDPSGGSRTVQVTL 85

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 17/90 (18%)

Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------------IVSLVKDSSAARNGLL-VNHNILE 475
            T+ LHRDS    GF+   G+               +  +V    AA+ G L ++  I+E
Sbjct: 10  LTLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68

Query: 476 VNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
           VNG ++      + +EA +     + + ++
Sbjct: 69  VNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 20/109 (18%)

Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-----------AINEGVFVCLVERGSP 381
           SSGS  K          LVL +D+  L G  +            + +EG+FV  +    P
Sbjct: 2   SSGSSGK-------SLTLVLHRDSGSL-GFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGP 53

Query: 382 ASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
           A+  G L+  D+I+ +NG  ++     Q  +  K A    +  V+R   
Sbjct: 54  AAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 351 VLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
           V+    +   G R+    +    + +  +  GS A+   L  GD IL+I+G         
Sbjct: 9   VVLPGPAPW-GFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 67

Query: 408 QVHKILKAAPVNNIRVVIR--DRPLERTVTLHRDSSG 442
                +KAA    + + I   +  L         SSG
Sbjct: 68  DAQDRIKAAS-YQLCLKIDRAETRLWSPQVSSGPSSG 103

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVG 483
              V L   +   +GF  + G        I  +   S AA   L     IL ++G     
Sbjct: 6   SGNVVLPGPAP--WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTES 63

Query: 484 LKDKELLEAMEKGGSVLTLTL 504
           +   +  + ++     L L +
Sbjct: 64  MTHADAQDRIKAASYQLCLKI 84

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 332 SSSGSGLKKAYVTNGI---------RELVLCKDASGLIGLRVCAINE-------GVFVCL 375
           SS  SGLK       +          E+ L    S  +G+ +            G+F+  
Sbjct: 2   SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61

Query: 376 VERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA------PVNNIRVVIRDR 428
           +  G  A   G LR  DQ++++NGET+ G +  +  + L+ +          I++VI  R
Sbjct: 62  IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121

Query: 429 P 429
            
Sbjct: 122 S 122

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 428 RPLERTVTLHRDSSGHFGFHFNKGQ-----------IVSLVKDSSAARNGLL-VNHNILE 475
             L   + L+   S   G      +           I S++   +A ++G L +N  ++ 
Sbjct: 23  EQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIA 82

Query: 476 VNGANVVGLKDKELLEAMEKGGSVL 500
           VNG  ++G  + E +E + +  S+ 
Sbjct: 83  VNGETLLGKSNHEAMETLRRSMSME 107

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR--VVIR 426
            G  V   +       +GL+ GD  +++NG  +   +   ++ + ++          V R
Sbjct: 19  LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVER 76

Query: 427 D-RPLERTVTL 436
           D +  +  +  
Sbjct: 77  DGQQHDVYIQF 87

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRVVIRD 427
           +GV +  V  GSPAS   L  G  I SING   +  N+      LK   V   I +    
Sbjct: 3   DGVQIDSVVPGSPAS-KVLTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQ 59

Query: 428 RPLERTVTLHRDSSG 442
                    + ++S 
Sbjct: 60  GTFHLKTGRNPNNSS 74

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 358 GLIGLRVCAINEGVFV--------CLVERGSPASLVGL-RFGDQILSINGETVAGYNMKQ 408
           G I        +   V              SP    G+   G  I  I+GETV       
Sbjct: 1   GRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGA--GSN 58

Query: 409 VHKILKAAPVNNIRVVIRDRPLE-RTVT 435
           ++++L      + R+ +  +  + R + 
Sbjct: 59  IYRVLSEKAGTSARIRLSGKGGDKRDLM 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.4
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.36
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.36
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.36
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.35
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.34
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.34
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.34
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.33
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.33
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.32
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.32
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.31
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.31
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.31
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.31
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.3
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.3
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.29
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.29
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.29
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.28
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.28
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.27
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.26
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.26
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.26
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.24
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.24
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.24
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.23
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.23
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.23
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.23
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.23
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.22
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.21
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.21
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.21
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.21
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.21
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.2
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.2
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.19
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.19
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.19
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.18
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.18
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.18
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.18
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.18
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.18
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.18
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.18
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.17
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.17
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.16
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.16
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.15
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.15
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.15
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.15
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.14
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.13
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.13
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.12
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.12
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.12
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.11
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.11
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.11
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.1
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.08
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.08
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.08
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.08
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.07
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.06
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.05
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.04
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.04
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.04
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.03
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.03
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.02
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.02
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.02
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.01
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.01
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.01
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.0
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.98
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.97
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.97
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.97
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.96
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.95
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.95
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.94
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.93
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.92
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.91
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.91
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.9
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.89
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.88
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.88
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.87
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.83
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.76
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.76
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.76
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.73
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.45
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.42
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.29
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.25
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.22
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.13
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.98
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.93
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.91
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	90.99

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.4e-15  Score=120.18  Aligned_cols=83  Identities=58%  Similarity=0.955  Sum_probs=77.6

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .|++.+.|+..++|||++...+.|++|..|.+||+|+++||+.||+|++|||+.+.+++.+++..+++...+..++|+|+
T Consensus         3 pr~v~l~k~~~~~lG~~l~~~~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~   82 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIR   82 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEE
T ss_pred             CEEEEEEeCCCCCEeEEEEeCCCCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEe
Confidence            36889999999999999999889999999999999999999999999999999999999999999999988899999998


Q ss_pred             cCC
Q psy9257         427 DRP  429 (530)
Q Consensus       427 R~~  429 (530)
                      +++
T Consensus        83 ~rP   85 (85)
T d1w9ea1          83 DRP   85 (85)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.8e-14  Score=116.96  Aligned_cols=79  Identities=54%  Similarity=0.932  Sum_probs=74.7

Q ss_pred             ceeeEEeccCCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      ..++|+|.|+..+.|||.+++|.|..|.++++|+++||+.||+|++|||+++.+++++++..+|++++..++|+|+|.+
T Consensus         4 ~pr~V~l~k~~~g~~Gf~i~~g~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~p~~   82 (82)
T d1r6ja_           4 DPRTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAF   82 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             CCEEEEEEeCCCCCcCEEEEEEEEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEEcCC
Confidence            4578999999888899999999999999999999999999999999999999999999999999999999999999863

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.9e-13  Score=114.45  Aligned_cols=92  Identities=24%  Similarity=0.415  Sum_probs=77.1

Q ss_pred             ccccceEEEeccCCCeeEEEEEecC-CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAIN-EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~~-~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ...++.|.+.|... .|||++.... .|+||..|.+||+|+++||+.||+|++|||+.+.+++++++..+|+.. +..|+
T Consensus        17 ~~~~r~v~l~k~~~-glG~~i~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~   94 (117)
T d1uita_          17 VEEPRHVKVQKGSE-PLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQ-CDTIT   94 (117)
T ss_dssp             SCCCEEEEEECSSC-CCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSC-CSEEE
T ss_pred             CCCCEEEEEEeCCC-ccCEEEEccCCCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCC-CCeEE
Confidence            34556788887654 5999998744 689999999999999999999999999999999999999999999765 68899


Q ss_pred             EEEecCCceeeEEec
Q psy9257         423 VVIRDRPLERTVTLH  437 (530)
Q Consensus       423 LtVrR~~~e~tVtL~  437 (530)
                      |+|+|++....+...
T Consensus        95 l~v~~~p~~~~~~~~  109 (117)
T d1uita_          95 ILAQYNPHVHQLSSH  109 (117)
T ss_dssp             EEECCCSCCCCCCCC
T ss_pred             EEEEECCcceeeeec
Confidence            999887765554443

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2.3e-12  Score=109.65  Aligned_cols=87  Identities=23%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             cceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      +..|.+.|...++|||++.+.  ..|++|..|.+||+|+++| |+.||+|++|||+.+.+++++++..+|+.+......+
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~   81 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV   81 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEE
T ss_pred             eEEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEE
Confidence            346788888888999999864  4689999999999999999 9999999999999999999999999999876544333


Q ss_pred             EEecCCceee
Q psy9257         424 VIRDRPLERT  433 (530)
Q Consensus       424 tVrR~~~e~t  433 (530)
                      .++|+++...
T Consensus        82 l~~~~~~~~~   91 (112)
T d1qaua_          82 LILRGPEGFT   91 (112)
T ss_dssp             EEEECCTTSE
T ss_pred             EEEeCCCCCC
Confidence            3445444333

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=108.24  Aligned_cols=79  Identities=24%  Similarity=0.426  Sum_probs=67.9

Q ss_pred             ceEEEeccCCCeeEEEEEec------------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHH
Q psy9257         348 RELVLCKDASGLIGLRVCAI------------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILK  414 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~------------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk  414 (530)
                      |.|.+.|.....|||++.++            ..|++|..|.++|+|+++| |+.||+|++|||..+.+++++++..+++
T Consensus         3 r~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk   82 (96)
T d2fcfa1           3 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR   82 (96)
T ss_dssp             EEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57888888788899999742            2589999999999999999 9999999999999999999999999998


Q ss_pred             hCCCCeEEEEEec
Q psy9257         415 AAPVNNIRVVIRD  427 (530)
Q Consensus       415 ~a~G~~VtLtVrR  427 (530)
                      ++ ++.|+|+|+|
T Consensus        83 ~~-~~~v~L~V~r   94 (96)
T d2fcfa1          83 KA-GNPVVFMVQS   94 (96)
T ss_dssp             TC-CSSEEEEEEC
T ss_pred             cC-CCeEEEEEEE
Confidence            75 5789999886

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2.5e-12  Score=106.75  Aligned_cols=82  Identities=24%  Similarity=0.407  Sum_probs=71.4

Q ss_pred             cceEEEeccC-CCeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         347 IRELVLCKDA-SGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s-~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      .+++.+.|.. ...|||++..+  ..|++|..|.++|+|+++||+.||+|++|||+.+.++++.++..+++++ +..|+|
T Consensus         7 ~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~-~~~v~L   85 (91)
T d1m5za_           7 LHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAES-GNKLDL   85 (91)
T ss_dssp             EEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTS-TTEEEE
T ss_pred             eEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEE
Confidence            3567788765 35699999863  4799999999999999999999999999999999999999999999864 678999


Q ss_pred             EEecCC
Q psy9257         424 VIRDRP  429 (530)
Q Consensus       424 tVrR~~  429 (530)
                      +|.|++
T Consensus        86 ~v~R~P   91 (91)
T d1m5za_          86 VISRNP   91 (91)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            998864

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.8e-12  Score=107.66  Aligned_cols=81  Identities=31%  Similarity=0.439  Sum_probs=71.6

Q ss_pred             ccceEEEeccCCCeeEEEEEec---------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI---------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~---------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      .++.|.+.|.....|||.+.++         ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++++++.+++++
T Consensus         3 ~i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~   82 (94)
T d1ihja_           3 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   82 (94)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc
Confidence            4567888887777899999753         1469999999999999999 99999999999999999999999999987


Q ss_pred             CCCCeEEEEEec
Q psy9257         416 APVNNIRVVIRD  427 (530)
Q Consensus       416 a~G~~VtLtVrR  427 (530)
                      . +..|+|+|+|
T Consensus        83 ~-~~~v~L~V~R   93 (94)
T d1ihja_          83 A-DFKIELEIQT   93 (94)
T ss_dssp             S-CSEEEEEEEE
T ss_pred             C-CCEEEEEEEe
Confidence            5 5789999987

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3e-12  Score=106.48  Aligned_cols=80  Identities=35%  Similarity=0.535  Sum_probs=70.4

Q ss_pred             cceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      -|.|.+.|+..+ |||++...  ..+++|..|.+||+|+++||+.||+|++|||..+.+++++++..+++.. ++.++|+
T Consensus         4 Pr~v~l~k~~~g-~Gf~i~~~~~~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~-~~~v~L~   81 (91)
T d1g9oa_           4 PRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLL   81 (91)
T ss_dssp             CEEEEEECBTTB-CCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEE
T ss_pred             CEEEEEEECCCe-eeEEEEecCCCCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEE
Confidence            467888887655 99999874  4689999999999999999999999999999999999999999999774 6789998


Q ss_pred             EecC
Q psy9257         425 IRDR  428 (530)
Q Consensus       425 VrR~  428 (530)
                      |.+.
T Consensus        82 v~~~   85 (91)
T d1g9oa_          82 VVDP   85 (91)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8764

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3e-12  Score=106.15  Aligned_cols=81  Identities=19%  Similarity=0.348  Sum_probs=71.0

Q ss_pred             cceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      +.+|.+.|+.. +|||.+.++        ..|++|..|.++|+|+++| |+.||+|++|||..+.+++++++..+++.. 
T Consensus         2 v~~V~L~k~~~-glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~-   79 (92)
T d2fe5a1           2 IMEVNLLKGPK-GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-   79 (92)
T ss_dssp             EEEEEEECCTT-CSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-
T ss_pred             EEEEEEEECCC-ccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC-
Confidence            45788888765 499999853        3689999999999999999 999999999999999999999999999875 


Q ss_pred             CCeEEEEEecCC
Q psy9257         418 VNNIRVVIRDRP  429 (530)
Q Consensus       418 G~~VtLtVrR~~  429 (530)
                      ++.|+|+|+|.+
T Consensus        80 ~~~v~L~v~Rpg   91 (92)
T d2fe5a1          80 SDMVYLKVAKPG   91 (92)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCEEEEEEECCC
Confidence            578999998864

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-12  Score=106.97  Aligned_cols=82  Identities=24%  Similarity=0.447  Sum_probs=72.6

Q ss_pred             ceeeEEeccCCCCccceeeccCc------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~Gv------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      ..+.|+|.++..+ |||.+.++.      |..|.++++|+++||+.||+|++|||++|.+++++++..+|+.+++.++|+
T Consensus         3 ~Pr~v~l~k~~~g-~Gf~i~~~~~~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~   81 (91)
T d1g9oa_           3 LPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL   81 (91)
T ss_dssp             CCEEEEEECBTTB-CCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             CCEEEEEEECCCe-eeEEEEecCCCCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4577888888665 999997542      999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCcchhh
Q psy9257         504 LIPTSMYQH  512 (530)
Q Consensus       504 Vip~~~~e~  512 (530)
                      |.+...++.
T Consensus        82 v~~~~~~e~   90 (91)
T d1g9oa_          82 VVDPETDEQ   90 (91)
T ss_dssp             EECCCCSCC
T ss_pred             EECCCCCCc
Confidence            988766554

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=103.65  Aligned_cols=75  Identities=21%  Similarity=0.439  Sum_probs=66.1

Q ss_pred             EEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257         350 LVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD  427 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR  427 (530)
                      |.+.|+..+ |||++. .+.+++|..|.+||+|+++||+.||+|++|||+.+.++++.++..+++.. ++.++|+|.|
T Consensus         1 v~l~r~~~g-~Gf~l~-~~~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~-~~~v~L~v~R   75 (77)
T d2f5ya1           1 ITIPRGKDG-FGFTIC-CDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWR   75 (77)
T ss_dssp             EEEECBTTB-TSEEEE-CSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEEE
T ss_pred             CEEecCCCc-ccEEEE-CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEE
Confidence            345666555 999998 56789999999999999999999999999999999999999999999765 5789999877

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3e-12  Score=103.89  Aligned_cols=74  Identities=28%  Similarity=0.540  Sum_probs=66.8

Q ss_pred             EEecc-CCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         434 VTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       434 VtL~k-d~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      +.+.+ +....|||.+.+|.|..|.++|+|+++||+.||+|++|||+++.+++++++.++|+++++.++|+|+|.
T Consensus         4 v~l~r~~~~~~lGf~i~~g~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~viP~   78 (79)
T d1y7na1           4 VLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   78 (79)
T ss_dssp             EEEEESSTTSCCCEEEETTEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             EEEEcCCCCCCcCEEEECCEEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEEcC
Confidence            33433 345669999999999999999999999999999999999999999999999999999999999999874

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=3.6e-12  Score=105.69  Aligned_cols=80  Identities=21%  Similarity=0.335  Sum_probs=71.6

Q ss_pred             ceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ++|.+.|...+.|||.+.++   ..|++|..|.+||+|+++| |+.||+|++|||..+.+++++++..+++.+ +..|+|
T Consensus         6 r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~l   84 (90)
T d1qava_           6 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVL   84 (90)
T ss_dssp             EEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEE
T ss_pred             EEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEE
Confidence            57888888777899999853   4689999999999999999 999999999999999999999999999886 567999


Q ss_pred             EEecC
Q psy9257         424 VIRDR  428 (530)
Q Consensus       424 tVrR~  428 (530)
                      +|+|.
T Consensus        85 ~v~~~   89 (90)
T d1qava_          85 EVKYM   89 (90)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            98763

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.32  E-value=3.7e-12  Score=105.71  Aligned_cols=83  Identities=28%  Similarity=0.446  Sum_probs=69.5

Q ss_pred             CCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCce-
Q psy9257         356 ASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE-  431 (530)
Q Consensus       356 s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e-  431 (530)
                      ...++|+++...   ..+++|..|.++|||++|||+.||+|++|||+.+.+++.+++..+++...+..|+|+|+|.+.. 
T Consensus         3 ~~~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~~   82 (92)
T d1fc6a3           3 SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPS   82 (92)
T ss_dssp             SCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEE
T ss_pred             ceEEEEEEEEEcCCCCceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCcC
Confidence            456678887653   3579999999999999999999999999999999999998999999877889999999997543 


Q ss_pred             --eeEEecc
Q psy9257         432 --RTVTLHR  438 (530)
Q Consensus       432 --~tVtL~k  438 (530)
                        ++++|.+
T Consensus        83 ~~~~~~l~R   91 (92)
T d1fc6a3          83 NTRTLQLTR   91 (92)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEEEEe
Confidence              4455543

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.8e-12  Score=107.94  Aligned_cols=81  Identities=27%  Similarity=0.331  Sum_probs=71.3

Q ss_pred             ccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ..|.|.+.|...+.|||.+.++   ..|++|..|.++++|+++||+.||+|++|||+.+.+++++++.++|+..  ..+.
T Consensus        15 ~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~--~~v~   92 (104)
T d1wi2a_          15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA--REIS   92 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHS--SSEE
T ss_pred             cCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcC--CeEE
Confidence            4467888888777899999863   3689999999999999999999999999999999999999999999875  4588


Q ss_pred             EEEecC
Q psy9257         423 VVIRDR  428 (530)
Q Consensus       423 LtVrR~  428 (530)
                      |+|+|.
T Consensus        93 l~V~~~   98 (104)
T d1wi2a_          93 MRVRFF   98 (104)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            888764

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=5.3e-12  Score=106.28  Aligned_cols=78  Identities=29%  Similarity=0.504  Sum_probs=69.9

Q ss_pred             ceeeEEeccCCCCccceeeccC-------------------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHH
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------------------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELL  490 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------------------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv  490 (530)
                      ++++|.|.|+....|||.+.++                   .|..|.++++|+++||+.||+|++|||+++.+++++++.
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHH
Confidence            4677888887777799998633                   289999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEEEeC
Q psy9257         491 EAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       491 ~iLkrsG~tVtLtVip~  507 (530)
                      .+|++++..++|+|.+.
T Consensus        85 ~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          85 NMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHTTTEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEec
Confidence            99999999999999875

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.8e-12  Score=105.47  Aligned_cols=79  Identities=25%  Similarity=0.359  Sum_probs=69.2

Q ss_pred             ceEEEeccCCCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         348 RELVLCKDASGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      ++|.+.|+.. +|||.+.++        ..|++|..|.+||+|+++| |+.||+|++|||..+.+++++++..+|+.+ +
T Consensus         3 ~~V~l~k~~~-glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~   80 (93)
T d1rgra_           3 EEITLERGNS-GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-G   80 (93)
T ss_dssp             EEEEEECCSS-CCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT-T
T ss_pred             EEEEEEeCCC-cCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            5777877654 599999752        3589999999999999999 999999999999999999999999999875 6


Q ss_pred             CeEEEEEecC
Q psy9257         419 NNIRVVIRDR  428 (530)
Q Consensus       419 ~~VtLtVrR~  428 (530)
                      ..|.|+|+|+
T Consensus        81 ~~v~L~v~R~   90 (93)
T d1rgra_          81 SIVRLYVMRR   90 (93)
T ss_dssp             TEEEEEEECS
T ss_pred             CEEEEEEEeC
Confidence            7899999885

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=4.6e-12  Score=107.07  Aligned_cols=81  Identities=22%  Similarity=0.373  Sum_probs=73.2

Q ss_pred             cccceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      ..++.|.+.|...+.|||+++....+++|..|.+||+|+++| |+.||+|++|||..+.+++++++..+|+... ..|+|
T Consensus        17 ~~i~~V~l~k~~~~~lG~~v~~~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~-~~v~L   95 (100)
T d1va8a1          17 ETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTF   95 (100)
T ss_dssp             EECEEEEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEE
T ss_pred             ceEEEEEEEeCCCCCccEEEEecCCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCC-CeEEE
Confidence            356778888888888999999888999999999999999999 9999999999999999999999999998875 56888


Q ss_pred             EEe
Q psy9257         424 VIR  426 (530)
Q Consensus       424 tVr  426 (530)
                      +|.
T Consensus        96 ~v~   98 (100)
T d1va8a1          96 VLI   98 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.3e-12  Score=107.61  Aligned_cols=86  Identities=30%  Similarity=0.532  Sum_probs=74.3

Q ss_pred             cccccceEEEeccCCCeeEEEEEec--CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      .....|.|.+.|+. ++|||++.+.  ..|++|..|.+||+|+++| |+.||+|++|||..+.+++++++..+|+.. +.
T Consensus         6 ~~~~~r~V~l~k~~-~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~   83 (102)
T d1tp5a1           6 IPREPRRIVIHRGS-TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQ   83 (102)
T ss_dssp             CCCSCEEEEEECTT-SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CS
T ss_pred             CCCCCEEEEEEeCC-CcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcC-CC
Confidence            34456788898875 4599999964  4699999999999999999 999999999999999999999999999865 68


Q ss_pred             eEEEEEecCCc
Q psy9257         420 NIRVVIRDRPL  430 (530)
Q Consensus       420 ~VtLtVrR~~~  430 (530)
                      .++|+|+|+++
T Consensus        84 ~v~L~v~~~~~   94 (102)
T d1tp5a1          84 TVTIIAQYKPE   94 (102)
T ss_dssp             EEEEEEEECHH
T ss_pred             eEEEEEEECCc
Confidence            89999987643

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.5e-12  Score=104.63  Aligned_cols=79  Identities=23%  Similarity=0.503  Sum_probs=68.4

Q ss_pred             ceEEEeccCCCeeEEEEEec---------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         348 RELVLCKDASGLIGLRVCAI---------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~---------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      ..+.+.|.. ++|||.+.++         ..|++|..|.+||+|+++||+.||+|++|||..+.++++.++..+++. .+
T Consensus        10 ~~v~l~k~~-~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~   87 (97)
T d1x5qa1          10 LTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AG   87 (97)
T ss_dssp             EEEEEECSS-SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CC
T ss_pred             EEEEEEeCC-CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhC-CC
Confidence            356677764 4599999853         257999999999999999999999999999999999999999999977 47


Q ss_pred             CeEEEEEecC
Q psy9257         419 NNIRVVIRDR  428 (530)
Q Consensus       419 ~~VtLtVrR~  428 (530)
                      ..++|+|+|+
T Consensus        88 ~~v~l~v~R~   97 (97)
T d1x5qa1          88 TAVQMRVWRE   97 (97)
T ss_dssp             SEEEEEEEEC
T ss_pred             CEEEEEEEEC
Confidence            8999999874

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=7.5e-12  Score=104.62  Aligned_cols=80  Identities=24%  Similarity=0.435  Sum_probs=69.8

Q ss_pred             ceEEEeccCCCeeEEEEEec-----------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257         348 RELVLCKDASGLIGLRVCAI-----------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA  415 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~-----------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~  415 (530)
                      .+|.|.|.. +.|||++...           ..|++|..|.++|+|+++| |+.||+|++|||..+.+++++++..+|+.
T Consensus         6 ~~V~L~k~~-~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~   84 (99)
T d1ozia_           6 FEVELAKTD-GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   84 (99)
T ss_dssp             EEEEEECCS-SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEECC-CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHC
Confidence            477888864 4699999752           2579999999999999999 99999999999999999999999999988


Q ss_pred             CCCCeEEEEEecCC
Q psy9257         416 APVNNIRVVIRDRP  429 (530)
Q Consensus       416 a~G~~VtLtVrR~~  429 (530)
                      . +..|+|+|+|.+
T Consensus        85 ~-~~~v~L~v~R~~   97 (99)
T d1ozia_          85 T-GQVVHLLLEKGQ   97 (99)
T ss_dssp             S-CSEEEEEEECCC
T ss_pred             C-CCeEEEEEEeCC
Confidence            5 688999998863

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.6e-12  Score=103.46  Aligned_cols=81  Identities=25%  Similarity=0.330  Sum_probs=71.8

Q ss_pred             cceEEEeccCCCeeEEEEEec-CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .|.|.+.|...+.|||.+... +.+++|..|.+||+|+++| |+.||+|++|||..+.+++.+++..+++++. ..|+|+
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~L~   80 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-GSITFK   80 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEE
Confidence            367888888888999999864 3689999999999999999 9999999999999999999999999998864 568888


Q ss_pred             EecC
Q psy9257         425 IRDR  428 (530)
Q Consensus       425 VrR~  428 (530)
                      |...
T Consensus        81 i~p~   84 (88)
T d1kwaa_          81 IVPS   84 (88)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            7753

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.1e-12  Score=112.78  Aligned_cols=79  Identities=24%  Similarity=0.307  Sum_probs=70.1

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .|.|.+.|... +|||+++ .+.+++|..|.++++|+++||+.||+|++|||+.|.+++++++.++|+.+.+..|+|+|.
T Consensus        16 pr~v~l~k~~~-g~Gf~i~-g~~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~   93 (111)
T d1vaea_          16 PRGIHFTVEEG-DLGFTLR-GNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV   93 (111)
T ss_dssp             CCCCCEECCSS-CCSCCEE-SSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE
T ss_pred             CEEEEEEECCC-ccCEEEE-CCccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEE
Confidence            45777877755 5999998 467899999999999999999999999999999999999999999999887788888876


Q ss_pred             c
Q psy9257         427 D  427 (530)
Q Consensus       427 R  427 (530)
                      +
T Consensus        94 ~   94 (111)
T d1vaea_          94 S   94 (111)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=9.6e-12  Score=104.67  Aligned_cols=80  Identities=24%  Similarity=0.351  Sum_probs=69.6

Q ss_pred             ceEEEeccCCCeeEEEEEecC---------------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHH
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---------------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKI  412 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---------------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~L  412 (530)
                      +.|.+.|....+|||.+++..               .+++|..|.+||+|++|||+.||+|++|||+.+.++++.++..+
T Consensus         7 ~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv~~   86 (104)
T d1q3oa_           7 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM   86 (104)
T ss_dssp             EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHHHH
Confidence            467777777778999998632               36899999999999999999999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEecC
Q psy9257         413 LKAAPVNNIRVVIRDR  428 (530)
Q Consensus       413 Lk~a~G~~VtLtVrR~  428 (530)
                      ++++ +..|+|+|.+.
T Consensus        87 ik~~-~~~v~L~V~~~  101 (104)
T d1q3oa_          87 IRQG-GNTLMVKVVMV  101 (104)
T ss_dssp             HHHT-TTEEEEEEEEE
T ss_pred             HHcC-CCeEEEEEEec
Confidence            9875 67899998763

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.1e-12  Score=102.43  Aligned_cols=75  Identities=25%  Similarity=0.355  Sum_probs=67.7

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      .|.|.+.|+..+.|||+++    +.+|..|.+||+|+++||+.||+|++|||+.+.+++++++..+++++ +..|+|+|.
T Consensus         5 pr~V~l~k~~~g~~Gf~i~----~g~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~-~~~v~l~v~   79 (82)
T d1r6ja_           5 PRTITMHKDSTGHVGFIFK----NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTS-GTVVTITIM   79 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEE----TTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEE
T ss_pred             CEEEEEEeCCCCCcCEEEE----EEEEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcC-CCEEEEEEE
Confidence            4688899988888999997    33799999999999999999999999999999999999999999875 578888875

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.4e-12  Score=104.77  Aligned_cols=76  Identities=29%  Similarity=0.483  Sum_probs=68.2

Q ss_pred             eeeEEeccCCCCccceeeccC---------------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHH
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG---------------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAM  493 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G---------------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iL  493 (530)
                      .++|+|.|+....|||.+.+|               . |..|.++|+|+++| |+.||+|++|||+++.+++++++..+|
T Consensus         2 pr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   81 (96)
T d2fcfa1           2 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   81 (96)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHH
Confidence            577889888888899998643               2 88999999999998 999999999999999999999999999


Q ss_pred             HhCCCEEEEEEEe
Q psy9257         494 EKGGSVLTLTLIP  506 (530)
Q Consensus       494 krsG~tVtLtVip  506 (530)
                      +++++.++|+|.|
T Consensus        82 k~~~~~v~L~V~r   94 (96)
T d2fcfa1          82 RKAGNPVVFMVQS   94 (96)
T ss_dssp             HTCCSSEEEEEEC
T ss_pred             HcCCCeEEEEEEE
Confidence            9999999999976

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=6.8e-12  Score=105.29  Aligned_cols=84  Identities=23%  Similarity=0.412  Sum_probs=73.3

Q ss_pred             ccccceEEEeccCCCeeEEEEEec-----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         344 TNGIRELVLCKDASGLIGLRVCAI-----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       344 ~~~Vr~V~L~K~s~G~LG~~V~~~-----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      ......|.+.|....+|||++...     ..|++|..|.++|+|+++| |+.||+|++|||..+.+++++++..+|++. 
T Consensus         8 ~~~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~-   86 (99)
T d1p1da2           8 SSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-   86 (99)
T ss_dssp             CSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-
T ss_pred             CCCcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcC-
Confidence            445567888887777899999753     2579999999999999999 999999999999999999999999999986 


Q ss_pred             CCeEEEEEecC
Q psy9257         418 VNNIRVVIRDR  428 (530)
Q Consensus       418 G~~VtLtVrR~  428 (530)
                      +..|+|+|+|+
T Consensus        87 ~~~v~L~V~r~   97 (99)
T d1p1da2          87 EDLVKLKIRKD   97 (99)
T ss_dssp             TTCEEEEEECC
T ss_pred             CCeEEEEEEeC
Confidence            46699999875

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1.2e-11  Score=102.49  Aligned_cols=77  Identities=32%  Similarity=0.543  Sum_probs=68.0

Q ss_pred             eeeEEeccCCCCccceeeccC-----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ..+|+|.|+..+ |||.+.+|           . |.+|.++|+|+++| |+.||+|++|||+++.+++++++..+|++++
T Consensus         2 ~~~V~l~k~~~g-lG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   80 (93)
T d1rgra_           2 YEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG   80 (93)
T ss_dssp             EEEEEEECCSSC-CSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCc-CCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            357788887554 99999643           2 99999999999999 9999999999999999999999999999999


Q ss_pred             CEEEEEEEeCc
Q psy9257         498 SVLTLTLIPTS  508 (530)
Q Consensus       498 ~tVtLtVip~~  508 (530)
                      +.++|+|.|+.
T Consensus        81 ~~v~L~v~R~~   91 (93)
T d1rgra_          81 SIVRLYVMRRK   91 (93)
T ss_dssp             TEEEEEEECSC
T ss_pred             CEEEEEEEeCC
Confidence            99999998754

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-11  Score=100.11  Aligned_cols=73  Identities=25%  Similarity=0.325  Sum_probs=66.0

Q ss_pred             EEeccCCCCccceeeccCc---EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257         434 VTLHRDSSGHFGFHFNKGQ---IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT  507 (530)
Q Consensus       434 VtL~kd~~g~LGfs~~~Gv---V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~  507 (530)
                      |+|.++..+ |||.+.++.   |..|.++|+|+++||+.||+|++|||+++.+++++++..+++.+++.++|+|.|.
T Consensus         1 v~l~r~~~g-~Gf~l~~~~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1           1 ITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             EEEECBTTB-TSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CEEecCCCc-ccEEEECCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            456677665 999998654   9999999999999999999999999999999999999999999999999999874

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.1e-12  Score=102.62  Aligned_cols=78  Identities=19%  Similarity=0.413  Sum_probs=71.1

Q ss_pred             eeeEEeccCCCCccceeeccCc-----EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~Gv-----V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      .+.|+|+|+..+.|||.+..+.     |..|.++|+|+++| |++||+|++|||+++.+++++++..+|+.+++.++|+|
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i   81 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI   81 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence            5778899988889999997442     99999999999999 99999999999999999999999999999999999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .|..
T Consensus        82 ~p~~   85 (88)
T d1kwaa_          82 VPSY   85 (88)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8764

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.5e-12  Score=103.46  Aligned_cols=78  Identities=27%  Similarity=0.480  Sum_probs=67.6

Q ss_pred             eEEEeccCCCeeEEEEEec---------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         349 ELVLCKDASGLIGLRVCAI---------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~---------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      +|.+.|+.. +|||.+.+.         ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++++++..+|+.+. 
T Consensus         5 ~V~L~k~~~-glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-   82 (94)
T d1wf8a1           5 PVELEKDED-GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-   82 (94)
T ss_dssp             EEEEECBTT-BSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC-
T ss_pred             EEEEEeCCC-CcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC-
Confidence            567777654 599999752         2579999999999999999 9999999999999999999999999998864 


Q ss_pred             CeEEEEEecC
Q psy9257         419 NNIRVVIRDR  428 (530)
Q Consensus       419 ~~VtLtVrR~  428 (530)
                      ..|+|+|.|+
T Consensus        83 ~~v~L~V~R~   92 (94)
T d1wf8a1          83 GNVRFVIGRE   92 (94)
T ss_dssp             SEEEEEEEEE
T ss_pred             CeEEEEEEeC
Confidence            6799999774

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.3e-12  Score=102.25  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=67.5

Q ss_pred             eEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI  425 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV  425 (530)
                      +|.+.+  .+.|||++.++   ..+++|..|.++++|+++||+.||+|++|||+.+.+++++++..+++.+ +..++|+|
T Consensus         4 ~V~l~~--~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~-~~~v~L~V   80 (85)
T d1rgwa_           4 SVTLTG--PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTL   80 (85)
T ss_dssp             EEEECC--SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEE
T ss_pred             EEEecC--CCCCCEEEEeecCCCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEE
Confidence            455544  45699999863   4679999999999999999999999999999999999999999999775 57899999


Q ss_pred             ecCC
Q psy9257         426 RDRP  429 (530)
Q Consensus       426 rR~~  429 (530)
                      +|.+
T Consensus        81 ~R~~   84 (85)
T d1rgwa_          81 QKSK   84 (85)
T ss_dssp             ESCC
T ss_pred             EECC
Confidence            9865

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8e-12  Score=106.23  Aligned_cols=83  Identities=27%  Similarity=0.378  Sum_probs=70.0

Q ss_pred             cccceEEEeccCCCeeEEEEEec----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         345 NGIRELVLCKDASGLIGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       345 ~~Vr~V~L~K~s~G~LG~~V~~~----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      ..++.+.+.|...++|||++.++    ..+++|..|.+||+|+++| |+.||+|++|||..+.+++++++..+|+.....
T Consensus         7 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   86 (107)
T d1x6da1           7 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP   86 (107)
T ss_dssp             TTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred             CCcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCC
Confidence            35567778888788899999863    3689999999999999999 999999999999999999999999999987655


Q ss_pred             eEEEEEec
Q psy9257         420 NIRVVIRD  427 (530)
Q Consensus       420 ~VtLtVrR  427 (530)
                      .+.+.++|
T Consensus        87 ~~l~v~~r   94 (107)
T d1x6da1          87 RQAVIVTR   94 (107)
T ss_dssp             SEEEEEEE
T ss_pred             EEEEEEEC
Confidence            44444444

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-11  Score=105.10  Aligned_cols=82  Identities=23%  Similarity=0.485  Sum_probs=71.6

Q ss_pred             cceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      +++|.+.|+..+ |||.+...      ..++||..|.++|+|+++| |+.||+|++|||+.+.+++++++.++|+++ +.
T Consensus         9 ~~~V~l~k~~~g-lG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~-~~   86 (110)
T d1um1a_           9 VFTVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GK   86 (110)
T ss_dssp             EEEEEEECCTTC-CCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CS
T ss_pred             EEEEEEEECCCC-CCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            457888887654 99999864      3579999999999999999 999999999999999999999999999876 57


Q ss_pred             eEEEEEecCCc
Q psy9257         420 NIRVVIRDRPL  430 (530)
Q Consensus       420 ~VtLtVrR~~~  430 (530)
                      .|.|+|+|...
T Consensus        87 ~v~l~v~r~~~   97 (110)
T d1um1a_          87 KMRFLVAKSDV   97 (110)
T ss_dssp             EEEEEEECCCH
T ss_pred             eEEEEEEeCCC
Confidence            89999987643

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.7e-11  Score=101.58  Aligned_cols=78  Identities=27%  Similarity=0.443  Sum_probs=70.2

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.++|+|.++..+.|||.+.+|       .|..|.++++|+++| |+.||+|++|||+++.+++++++..+|+++++.++
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~   83 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV   83 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4577888888777899999744       299999999999999 99999999999999999999999999999999999


Q ss_pred             EEEEeC
Q psy9257         502 LTLIPT  507 (530)
Q Consensus       502 LtVip~  507 (530)
                      |+|.+.
T Consensus        84 l~v~~~   89 (90)
T d1qava_          84 LEVKYM   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            998753

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2e-11  Score=101.15  Aligned_cols=78  Identities=24%  Similarity=0.473  Sum_probs=66.3

Q ss_pred             eEEEeccCCCeeEEEEEecC------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      .|.+.+.  .+|||.+.+..      .|++|..|.+||+|+++| |+.||+|++|||..+.+++++++..+|+.. +..|
T Consensus         7 ~v~l~~~--~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~-~~~v   83 (92)
T d1t2ma1           7 TVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT-SSVV   83 (92)
T ss_dssp             EEEEECS--SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC-CSEE
T ss_pred             EEEEeCC--CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC-CCeE
Confidence            4444443  34999997632      479999999999999999 999999999999999999999999999875 5789


Q ss_pred             EEEEecCC
Q psy9257         422 RVVIRDRP  429 (530)
Q Consensus       422 tLtVrR~~  429 (530)
                      +|+|.|++
T Consensus        84 ~L~v~R~g   91 (92)
T d1t2ma1          84 TLEVAKQG   91 (92)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99998864

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=2.3e-11  Score=100.81  Aligned_cols=77  Identities=22%  Similarity=0.327  Sum_probs=68.5

Q ss_pred             eeeEEeccCCC-CccceeeccC-----c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEE
Q psy9257         431 ERTVTLHRDSS-GHFGFHFNKG-----Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT  503 (530)
Q Consensus       431 e~tVtL~kd~~-g~LGfs~~~G-----v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLt  503 (530)
                      .++++|.|+.. +.|||.+.+|     . |..|.++++|+++||+.||+|++|||+++.++++.++..+|++++..++|+
T Consensus         7 ~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~   86 (91)
T d1m5za_           7 LHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV   86 (91)
T ss_dssp             EEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEE
T ss_pred             eEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
Confidence            46677877653 5699999753     3 999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy9257         504 LIPT  507 (530)
Q Consensus       504 Vip~  507 (530)
                      |.|.
T Consensus        87 v~R~   90 (91)
T d1m5za_          87 ISRN   90 (91)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9875

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-11  Score=107.87  Aligned_cols=81  Identities=25%  Similarity=0.422  Sum_probs=70.2

Q ss_pred             cceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      .+.|.+.+.....|||++.++   ..|++|..|.++++|+++||+.||+|++|||+.+.+++++++.++|+..  ..+.|
T Consensus        21 ~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~--~~v~l   98 (128)
T d1uf1a_          21 EKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS--RHLIL   98 (128)
T ss_dssp             EEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC--SEEEE
T ss_pred             eEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CcEEE
Confidence            356777787777899999964   3589999999999999999999999999999999999999999999764  46888


Q ss_pred             EEecCC
Q psy9257         424 VIRDRP  429 (530)
Q Consensus       424 tVrR~~  429 (530)
                      +|++..
T Consensus        99 ~v~~~~  104 (128)
T d1uf1a_          99 TVKDVG  104 (128)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            887753

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=1.4e-11  Score=101.02  Aligned_cols=79  Identities=18%  Similarity=0.260  Sum_probs=63.5

Q ss_pred             CCeeEEEEEec--CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHH-HhCCCCeEEEEEec-CCcee
Q psy9257         357 SGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIL-KAAPVNNIRVVIRD-RPLER  432 (530)
Q Consensus       357 ~G~LG~~V~~~--~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LL-k~a~G~~VtLtVrR-~~~e~  432 (530)
                      +.+||+.+...  ..|++|..|.++|||+++||+.||+|++|||+.+.++.+  +...+ ....++.|.|+|.| +++++
T Consensus         2 ~~~LGv~~~~~~~~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~~~~--~~~~i~~~~~g~~v~l~v~r~~g~~~   79 (88)
T d2z9ia1           2 HASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADA--LVAAVRSKAPGATVALTFQDPSGGSR   79 (88)
T ss_dssp             CEECCEEEECCC-CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCSHHH--HHHHHHTSCTTCEEEEEEEETTTEEE
T ss_pred             CCEEeEEEEecCCCCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCcHHH--HHHHHHhCCCCCEEEEEEEECCCCEE
Confidence            46788888764  368999999999999999999999999999999988754  44444 44568999999987 56666


Q ss_pred             eEEec
Q psy9257         433 TVTLH  437 (530)
Q Consensus       433 tVtL~  437 (530)
                      ++++.
T Consensus        80 ~v~vt   84 (88)
T d2z9ia1          80 TVQVT   84 (88)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65543

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.7e-11  Score=101.15  Aligned_cols=78  Identities=29%  Similarity=0.505  Sum_probs=68.5

Q ss_pred             CceeeEEeccCCCCccceeeccC-------------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG-------------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK  495 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G-------------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr  495 (530)
                      .++++++|.++..+ |||.+.+|             .|.+|.++|+|+++||+.||+|++|||+++.++++.++..+|++
T Consensus         7 ~~~~~v~l~k~~~g-lG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~   85 (97)
T d1x5qa1           7 EEELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG   85 (97)
T ss_dssp             CEEEEEEEECSSSS-CSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             CeEEEEEEEeCCCe-eCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            35567778887654 99998533             28999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeC
Q psy9257         496 GGSVLTLTLIPT  507 (530)
Q Consensus       496 sG~tVtLtVip~  507 (530)
                      ++..++|+|.|+
T Consensus        86 ~~~~v~l~v~R~   97 (97)
T d1x5qa1          86 AGTAVQMRVWRE   97 (97)
T ss_dssp             CCSEEEEEEEEC
T ss_pred             CCCEEEEEEEEC
Confidence            999999999874

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.23  E-value=1.3e-11  Score=102.53  Aligned_cols=82  Identities=15%  Similarity=0.337  Sum_probs=70.1

Q ss_pred             cceEEEeccCCCeeEEEEEec-----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC--C
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP--V  418 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~--G  418 (530)
                      +..|.+.++..++|||++.++     +.|+||..|.++|+|+++| |+.||+|++|||..+.+++++++..+|+...  .
T Consensus         2 i~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~   81 (92)
T d2f0aa1           2 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKP   81 (92)
T ss_dssp             EEEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSS
T ss_pred             EEEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCC
Confidence            346777787777899999864     2589999999999999999 9999999999999999999999999998642  3


Q ss_pred             CeEEEEEecC
Q psy9257         419 NNIRVVIRDR  428 (530)
Q Consensus       419 ~~VtLtVrR~  428 (530)
                      ..|.|+|.|.
T Consensus        82 ~~v~L~V~R~   91 (92)
T d2f0aa1          82 GPIVLTVAKL   91 (92)
T ss_dssp             SCEEEEEECC
T ss_pred             CcEEEEEEeC
Confidence            4688888874

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=3.2e-11  Score=100.62  Aligned_cols=80  Identities=20%  Similarity=0.444  Sum_probs=69.7

Q ss_pred             ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      -+|.+.|. .+.|||++.+..   .+++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+|+.. +..+.|
T Consensus         5 ~tV~l~k~-~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l   82 (95)
T d1n7ea_           5 YTVELKRY-GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GETVTL   82 (95)
T ss_dssp             EEEEEECT-TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEE
T ss_pred             EEEEEEEC-CCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEE
Confidence            36777675 567999998643   679999999999999999 999999999999999999999999999875 678999


Q ss_pred             EEecCC
Q psy9257         424 VIRDRP  429 (530)
Q Consensus       424 tVrR~~  429 (530)
                      +|+|..
T Consensus        83 ~v~r~~   88 (95)
T d1n7ea_          83 KIKKQT   88 (95)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            998864

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.1e-12  Score=106.08  Aligned_cols=81  Identities=27%  Similarity=0.489  Sum_probs=69.9

Q ss_pred             cceEEEeccCCCeeEEEEEec---------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI---------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~---------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      .+.+.+.|...+ |||++.++         ..|++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+|+++
T Consensus         8 ~~~v~l~k~~~g-lGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~   86 (105)
T d1whaa_           8 RHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             EEEEEECCCTTC-CSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             CEEEEEEECCCc-cCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC
Confidence            346777777665 99999853         3579999999999999999 999999999999999999999999999865


Q ss_pred             CCCeEEEEEecCC
Q psy9257         417 PVNNIRVVIRDRP  429 (530)
Q Consensus       417 ~G~~VtLtVrR~~  429 (530)
                       +..|.|+|+|..
T Consensus        87 -~~~v~l~v~R~~   98 (105)
T d1whaa_          87 -SPTIALLLEREA   98 (105)
T ss_dssp             -CSCEEEEEEECC
T ss_pred             -CCeEEEEEEECC
Confidence             578999998853

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.6e-11  Score=103.15  Aligned_cols=78  Identities=31%  Similarity=0.510  Sum_probs=67.6

Q ss_pred             eEEEeccCCCeeEEEEEec-----------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         349 ELVLCKDASGLIGLRVCAI-----------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~-----------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      +|.+.|.. +.|||++.++           ..|++|..|.++++|+++| |+.||+|++|||+.+.+++++++.++|+..
T Consensus        11 ~V~l~k~~-~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~   89 (107)
T d1uhpa_          11 TLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA   89 (107)
T ss_dssp             EEEECCSS-SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             EEEEEECC-CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhC
Confidence            67777764 5699999853           3589999999999999999 999999999999999999999999999886


Q ss_pred             CCCeEEEEEecC
Q psy9257         417 PVNNIRVVIRDR  428 (530)
Q Consensus       417 ~G~~VtLtVrR~  428 (530)
                       +..+.|+|.|+
T Consensus        90 -~~~v~l~v~r~  100 (107)
T d1uhpa_          90 -KEPIVVQVLRR  100 (107)
T ss_dssp             -CSSEEEEEEEC
T ss_pred             -CCcEEEEEEEC
Confidence             46788888764

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-11  Score=102.14  Aligned_cols=67  Identities=31%  Similarity=0.394  Sum_probs=59.3

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccC
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD  439 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd  439 (530)
                      .|++|..|.++|+|+++||+.||+|++|||+.|.++.+  +.++++  .++.+.|+|.|+++..++++..+
T Consensus        31 ~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~s~~d--l~~~l~--~g~~v~l~v~R~g~~~~~~v~pe   97 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAED--VYEAVR--TQSQLAVQIRRGRETLTLYVTPE   97 (100)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHH--HHHHHT--TCSSEEEEEEETTEEEEEEECCE
T ss_pred             CcEEEEEECCCchHhhcCCCCCcEEEEECCEEcCCHHH--HHHHhc--CCCEEEEEEEECCEEEEEEEEee
Confidence            68999999999999999999999999999999998755  666663  57899999999999988887654

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.5e-11  Score=99.56  Aligned_cols=76  Identities=21%  Similarity=0.477  Sum_probs=67.1

Q ss_pred             eeEEeccCCCCccceeeccC-----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS  498 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~  498 (530)
                      ++|+|.|+..+ |||.+.+|           . |..|.++|+|+++| |++||+|++|||+++.+++++++..+|+.+++
T Consensus         3 ~~V~L~k~~~g-lG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~   81 (92)
T d2fe5a1           3 MEVNLLKGPKG-LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD   81 (92)
T ss_dssp             EEEEEECCTTC-SCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCS
T ss_pred             EEEEEEECCCc-cCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCC
Confidence            46777777654 99998643           1 99999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEEeCc
Q psy9257         499 VLTLTLIPTS  508 (530)
Q Consensus       499 tVtLtVip~~  508 (530)
                      .++|+|.|..
T Consensus        82 ~v~L~v~Rpg   91 (92)
T d2fe5a1          82 MVYLKVAKPG   91 (92)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEECCC
Confidence            9999998753

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=3.4e-11  Score=99.75  Aligned_cols=75  Identities=27%  Similarity=0.437  Sum_probs=67.6

Q ss_pred             eeEEeccCCCCccceeeccC-------------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ++|+|.|+....|||.+.+|             .|..|.++|+|+++| |+.||+|++|||+++.+++++++..+|++++
T Consensus         5 ~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~   84 (94)
T d1ihja_           5 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEAD   84 (94)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             EEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46778887777899999643             189999999999998 9999999999999999999999999999999


Q ss_pred             CEEEEEEEe
Q psy9257         498 SVLTLTLIP  506 (530)
Q Consensus       498 ~tVtLtVip  506 (530)
                      ..++|+|.|
T Consensus        85 ~~v~L~V~R   93 (94)
T d1ihja_          85 FKIELEIQT   93 (94)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999999976

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-11  Score=99.82  Aligned_cols=78  Identities=23%  Similarity=0.391  Sum_probs=67.6

Q ss_pred             cceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         347 IRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      ++.|.+.|+.. +|||++.++      ..|++|..|.++|+|+++| |+.||+|++|||..+.+++++++..+++++ +.
T Consensus         3 ~~~V~l~K~~~-~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~-~~   80 (88)
T d2fnea1           3 CKSITLERGPD-GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KG   80 (88)
T ss_dssp             EEEEEECCBTT-BTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CS
T ss_pred             EEEEEEEeCCC-ccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            56788888755 499999853      2579999999999999999 999999999999999999999999999886 46


Q ss_pred             eEEEEEe
Q psy9257         420 NIRVVIR  426 (530)
Q Consensus       420 ~VtLtVr  426 (530)
                      .++|+|.
T Consensus        81 ~v~L~Vl   87 (88)
T d2fnea1          81 TVTLMVL   87 (88)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            6888764

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.5e-12  Score=109.71  Aligned_cols=83  Identities=20%  Similarity=0.352  Sum_probs=71.8

Q ss_pred             ccceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      .+..|.+.|... +|||.|.++      ..|+||..|.+||+|+++| |+.||+|++|||..+.+++++++..+|+....
T Consensus        29 ~~~~V~l~k~~~-glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~  107 (130)
T d1i16a_          29 TVCTVTLEKMSA-GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD  107 (130)
T ss_dssp             EEEEEEEETTSS-STTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS
T ss_pred             eEEEEEEEeCCC-ccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCC
Confidence            345677777654 599999863      3679999999999999999 99999999999999999999999999998776


Q ss_pred             CeEEEEEecCC
Q psy9257         419 NNIRVVIRDRP  429 (530)
Q Consensus       419 ~~VtLtVrR~~  429 (530)
                      ..|.|+|+|+.
T Consensus       108 ~~v~l~v~r~~  118 (130)
T d1i16a_         108 GPVTIVIRRKS  118 (130)
T ss_dssp             SEEEEEEEEES
T ss_pred             CeEEEEEEcCC
Confidence            78999998853

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.5e-11  Score=103.16  Aligned_cols=86  Identities=28%  Similarity=0.390  Sum_probs=72.5

Q ss_pred             cccccceEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhc--CCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-
Q psy9257         343 VTNGIRELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLV--GLRFGDQILSINGETVAGYNMKQVHKILKAA-  416 (530)
Q Consensus       343 ~~~~Vr~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakA--GLq~GDqILaING~~V~g~s~~~v~~LLk~a-  416 (530)
                      +...+..|.+.++..++|||++.++   ..+++|..|.++|+|+++  ||+.||+|++|||+.+.+++++++..+|+.+ 
T Consensus         5 P~~~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~   84 (106)
T d2cs5a1           5 PHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   84 (106)
T ss_dssp             CSSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3445667888888888999999864   367999999999999986  6999999999999999999999999999864 


Q ss_pred             --CCCeEEEEEecC
Q psy9257         417 --PVNNIRVVIRDR  428 (530)
Q Consensus       417 --~G~~VtLtVrR~  428 (530)
                        ....|.|+|+++
T Consensus        85 ~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          85 ERHSGELMLLVRPN   98 (106)
T ss_dssp             HCCSSCEEEEEECC
T ss_pred             CCCCcEEEEEECCC
Confidence              234678888765

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.7e-11  Score=102.15  Aligned_cols=79  Identities=28%  Similarity=0.515  Sum_probs=68.9

Q ss_pred             CceeeEEeccCCCCccceeeccC--------------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG--------------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G--------------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      ++.++|+|.|+. +.|||.+.+|              . |..|.++++|+++| |+.||+|++|||+++.++++++++.+
T Consensus         7 g~~~~V~l~k~~-~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~   85 (107)
T d1uhpa_           7 GKSLTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA   85 (107)
T ss_dssp             SEEEEEEECCSS-SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEEECC-CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHH
Confidence            455677787765 4599999643              2 99999999999999 99999999999999999999999999


Q ss_pred             HHhCCCEEEEEEEeCc
Q psy9257         493 MEKGGSVLTLTLIPTS  508 (530)
Q Consensus       493 LkrsG~tVtLtVip~~  508 (530)
                      |++++..++|+|.|..
T Consensus        86 lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          86 FKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHCCSSEEEEEEECC
T ss_pred             HHhCCCcEEEEEEECC
Confidence            9999999999998754

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.8e-12  Score=107.42  Aligned_cols=82  Identities=26%  Similarity=0.488  Sum_probs=72.2

Q ss_pred             ccceEEEeccCCCeeEEEEEec------------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHH
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI------------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKI  412 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~------------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~L  412 (530)
                      .+++|.+.|.....|||.+.++            ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++++++..+
T Consensus         9 ~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   88 (111)
T d1ujua_           9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             CeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHH
Confidence            4568888888777899999852            2679999999999999999 99999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEecC
Q psy9257         413 LKAAPVNNIRVVIRDR  428 (530)
Q Consensus       413 Lk~a~G~~VtLtVrR~  428 (530)
                      |+.. +..|+|+|.|+
T Consensus        89 lk~~-~~~v~L~V~r~  103 (111)
T d1ujua_          89 LRSV-GDTLTVLVCDG  103 (111)
T ss_dssp             HSSC-SSEEEECCCCC
T ss_pred             HHcC-CCeEEEEEEEC
Confidence            9764 57899998875

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.1e-11  Score=103.51  Aligned_cols=79  Identities=25%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             eEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRV  423 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtL  423 (530)
                      .+.+.|.. .+|||.+.+.   +.+++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+|+..+ +..|.|
T Consensus        22 ~v~l~k~~-~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L  100 (123)
T d1ueqa_          22 STTLKKSN-MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNL  100 (123)
T ss_dssp             EEEEECCT-TSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEE
T ss_pred             EEEEEECC-CeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            55666654 4599999863   3679999999999999999 9999999999999999999999999999875 678999


Q ss_pred             EEecC
Q psy9257         424 VIRDR  428 (530)
Q Consensus       424 tVrR~  428 (530)
                      +|+|.
T Consensus       101 ~v~R~  105 (123)
T d1ueqa_         101 VLCRG  105 (123)
T ss_dssp             EEEES
T ss_pred             EEEcC
Confidence            99884

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.9e-11  Score=101.61  Aligned_cols=80  Identities=31%  Similarity=0.501  Sum_probs=69.6

Q ss_pred             ceeeEEeccCCCCccceeeccC---------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG---------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS  498 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G---------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~  498 (530)
                      +.++|+|.|+..+ |||.+.++         . |..|.++++|+++| |+.||+|++|||+++.+++++++..+|+.++.
T Consensus         8 ~~~~V~l~k~~~g-lG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~   86 (110)
T d1um1a_           8 YVFTVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK   86 (110)
T ss_dssp             CEEEEEEECCTTC-CCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCS
T ss_pred             CEEEEEEEECCCC-CCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4567778877654 99998633         2 89999999999999 99999999999999999999999999999999


Q ss_pred             EEEEEEEeCcch
Q psy9257         499 VLTLTLIPTSMY  510 (530)
Q Consensus       499 tVtLtVip~~~~  510 (530)
                      .++|+|.+....
T Consensus        87 ~v~l~v~r~~~~   98 (110)
T d1um1a_          87 KMRFLVAKSDVE   98 (110)
T ss_dssp             EEEEEEECCCHH
T ss_pred             eEEEEEEeCCCC
Confidence            999999876543

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.1e-11  Score=103.24  Aligned_cols=81  Identities=21%  Similarity=0.355  Sum_probs=70.8

Q ss_pred             ceEEEeccCCCeeEEEEEec----------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC
Q psy9257         348 RELVLCKDASGLIGLRVCAI----------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA  416 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~----------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a  416 (530)
                      ++|.+.|...+.|||.+...          ..+++|..|.++++|+++| |+.||+|++|||+.|.+++++++.++|++.
T Consensus        12 ~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~   91 (114)
T d1uewa_          12 SDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA   91 (114)
T ss_dssp             EEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcC
Confidence            46778787777899999863          2468999999999999998 999999999999999999999999999875


Q ss_pred             CCCeEEEEEecCC
Q psy9257         417 PVNNIRVVIRDRP  429 (530)
Q Consensus       417 ~G~~VtLtVrR~~  429 (530)
                       +..|+|+|+|..
T Consensus        92 -~~~v~l~V~r~~  103 (114)
T d1uewa_          92 -GLSVTLRIIPQE  103 (114)
T ss_dssp             -TTEEEEEECCCS
T ss_pred             -CCeEEEEEEeCC
Confidence             578999998853

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.6e-11  Score=101.74  Aligned_cols=79  Identities=25%  Similarity=0.441  Sum_probs=67.4

Q ss_pred             cceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV  423 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL  423 (530)
                      -+.|.+.+....+|||++..+.   .|++|..|.++|+|+++||+.||+|++|||+.+.+++++++..+|+...  .+.+
T Consensus         9 ~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~--~~~l   86 (101)
T d1x5na1           9 EKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR--SLTI   86 (101)
T ss_dssp             SEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCS--SEEE
T ss_pred             cEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCC--CEEE
Confidence            3567777766777999998643   5899999999999999999999999999999999999999999998864  4666


Q ss_pred             EEec
Q psy9257         424 VIRD  427 (530)
Q Consensus       424 tVrR  427 (530)
                      +|.+
T Consensus        87 ~v~~   90 (101)
T d1x5na1          87 SIVA   90 (101)
T ss_dssp             EECS
T ss_pred             EEEE
Confidence            6654

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=5.5e-11  Score=100.67  Aligned_cols=77  Identities=25%  Similarity=0.435  Sum_probs=67.5

Q ss_pred             ceeeEEeccCCCCccceeeccC------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ..++|+|.++....|||.+.+|      . |..|.++++|+++||+.||+|++|||+++.+++++++..+|+.++ .++|
T Consensus        15 ~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v~l   93 (104)
T d1wi2a_          15 LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISM   93 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SEEE
T ss_pred             cCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcCC-eEEE
Confidence            3477888888777899999754      2 999999999999999999999999999999999999999998875 5888


Q ss_pred             EEEeC
Q psy9257         503 TLIPT  507 (530)
Q Consensus       503 tVip~  507 (530)
                      +|.+.
T Consensus        94 ~V~~~   98 (104)
T d1wi2a_          94 RVRFF   98 (104)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            88654

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7e-11  Score=97.03  Aligned_cols=77  Identities=26%  Similarity=0.518  Sum_probs=65.6

Q ss_pred             eEEEeccCCCeeEEEEEecC-----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN-----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNI  421 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~-----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~V  421 (530)
                      +|.+.|..+..|||.+....     .+++|..|.++|+|+++| |+.||+|++|||+.+.+++++++..+++.+. ...+
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v   80 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV   80 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEE
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEE
Confidence            46677777778999997532     479999999999999999 9999999999999999999999999998864 3456


Q ss_pred             EEEE
Q psy9257         422 RVVI  425 (530)
Q Consensus       422 tLtV  425 (530)
                      +|.|
T Consensus        81 ~L~V   84 (85)
T d1x45a1          81 KLNI   84 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.3e-11  Score=103.08  Aligned_cols=79  Identities=28%  Similarity=0.525  Sum_probs=69.4

Q ss_pred             ceeeEEeccCCCCccceeeccC--------------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHH
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG--------------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAME  494 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G--------------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLk  494 (530)
                      +..+|+|.|+..+.|||.+.+|              .|..|.++++|+++| |+.||+|++|||++|.+++++++.++|+
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~   89 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHH
Confidence            4566777777777799988642              299999999999998 9999999999999999999999999999


Q ss_pred             hCCCEEEEEEEeCc
Q psy9257         495 KGGSVLTLTLIPTS  508 (530)
Q Consensus       495 rsG~tVtLtVip~~  508 (530)
                      +++..++|+|.|..
T Consensus        90 ~~~~~v~l~V~r~~  103 (114)
T d1uewa_          90 DAGLSVTLRIIPQE  103 (114)
T ss_dssp             HTTTEEEEEECCCS
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998864

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=7.2e-11  Score=98.53  Aligned_cols=79  Identities=23%  Similarity=0.405  Sum_probs=67.5

Q ss_pred             CceeeEEeccCCCCccceeecc--------------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNK--------------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEA  492 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~--------------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~i  492 (530)
                      ++.++|+|.|+. +.|||.+..              |. |..|.++|+|+++| |+.||+|++|||+++.+++++++..+
T Consensus         3 g~~~~V~L~k~~-~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~   81 (99)
T d1ozia_           3 GDTFEVELAKTD-GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   81 (99)
T ss_dssp             TCEEEEEEECCS-SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             CCEEEEEEEECC-CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHH
Confidence            345677777765 358888852              22 89999999999999 99999999999999999999999999


Q ss_pred             HHhCCCEEEEEEEeCc
Q psy9257         493 MEKGGSVLTLTLIPTS  508 (530)
Q Consensus       493 LkrsG~tVtLtVip~~  508 (530)
                      |+.++..++|+|.|..
T Consensus        82 lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          82 LRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHSCSEEEEEEECCC
T ss_pred             HHCCCCeEEEEEEeCC
Confidence            9999999999998753

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.2e-11  Score=97.99  Aligned_cols=75  Identities=25%  Similarity=0.387  Sum_probs=65.9

Q ss_pred             eeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ++|++.+  .+.|||.+.+|       .|..|.++++|+++||+.||+|++|||+++.+++++++..+|+++++.++|+|
T Consensus         3 ~~V~l~~--~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V   80 (85)
T d1rgwa_           3 YSVTLTG--PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL   80 (85)
T ss_dssp             EEEEECC--SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEE
T ss_pred             EEEEecC--CCCCCEEEEeecCCCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence            4566654  35699999755       29999999999999999999999999999999999999999999999999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .|..
T Consensus        81 ~R~~   84 (85)
T d1rgwa_          81 QKSK   84 (85)
T ss_dssp             ESCC
T ss_pred             EECC
Confidence            8764

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.2e-11  Score=100.96  Aligned_cols=78  Identities=26%  Similarity=0.424  Sum_probs=66.0

Q ss_pred             eEEEeccCCCeeEEEEEec-----------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         349 ELVLCKDASGLIGLRVCAI-----------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~-----------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      ++.+.....+.|||++.++           +.|+||..|.++|+|+++ |+.||+|++|||..+.++++.++..+|+.. 
T Consensus        12 ~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~~-   89 (103)
T d2h3la1          12 EIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTF-   89 (103)
T ss_dssp             EEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHHC-
T ss_pred             EEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHhC-
Confidence            3444444456799999864           257999999999999876 999999999999999999999999999886 


Q ss_pred             CCeEEEEEecC
Q psy9257         418 VNNIRVVIRDR  428 (530)
Q Consensus       418 G~~VtLtVrR~  428 (530)
                      +..++|.|.|+
T Consensus        90 ~~~v~L~V~R~  100 (103)
T d2h3la1          90 QNTVELIIVRE  100 (103)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEEE
Confidence            57899999874

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.4e-11  Score=96.23  Aligned_cols=76  Identities=25%  Similarity=0.483  Sum_probs=67.1

Q ss_pred             eeeEEeccCCCCccceeecc---Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC-CCEEEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNK---GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG-GSVLTLTLI  505 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~---Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs-G~tVtLtVi  505 (530)
                      .+++.|.|+..+.|||.+..   |. |..|.++|+|+++||+.||+|++|||+++.+++.+++..+|+.+ +..++|+|.
T Consensus         3 pr~v~l~k~~~~~lG~~l~~~~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~   82 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIR   82 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEE
T ss_pred             CEEEEEEeCCCCCEeEEEEeCCCCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEe
Confidence            46788889888899999874   33 99999999999999999999999999999999999999999865 678998885


Q ss_pred             e
Q psy9257         506 P  506 (530)
Q Consensus       506 p  506 (530)
                      +
T Consensus        83 ~   83 (85)
T d1w9ea1          83 D   83 (85)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.4e-11  Score=105.83  Aligned_cols=86  Identities=24%  Similarity=0.338  Sum_probs=74.7

Q ss_pred             EEEEecCCceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH
Q psy9257         422 RVVIRDRPLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME  494 (530)
Q Consensus       422 tLtVrR~~~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk  494 (530)
                      .+.+.+.+.+++|+|.+.....|||.+.+|.       |..|.++++|+++||+.||+|++|||++|.++++++++++|+
T Consensus        12 ~~~~~~~~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr   91 (128)
T d1uf1a_          12 TLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLK   91 (128)
T ss_dssp             CSCCCCCSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHT
T ss_pred             cceecCCCCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            3455667788999999988778999998653       999999999999999999999999999999999999999997


Q ss_pred             hCCCEEEEEEEeCc
Q psy9257         495 KGGSVLTLTLIPTS  508 (530)
Q Consensus       495 rsG~tVtLtVip~~  508 (530)
                      .+ ..+.|+|.+..
T Consensus        92 ~~-~~v~l~v~~~~  104 (128)
T d1uf1a_          92 SS-RHLILTVKDVG  104 (128)
T ss_dssp             TC-SEEEEEEECCS
T ss_pred             cC-CcEEEEEEECC
Confidence            65 57888887654

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.9e-11  Score=102.90  Aligned_cols=82  Identities=21%  Similarity=0.336  Sum_probs=71.8

Q ss_pred             cceEEEeccCCCeeEEEEEec----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257         347 IRELVLCKDASGLIGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI  421 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V  421 (530)
                      .+.|.+.|...+.|||.+...    ..|++|..|.++++|+++| |+.||+|++|||..+.+++++++.++|+.. +..|
T Consensus        16 p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~-~~~v   94 (117)
T d1v62a_          16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI-SEKV   94 (117)
T ss_dssp             SEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC-SSEE
T ss_pred             CEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcC-CCcE
Confidence            356778887777899999863    3689999999999999999 999999999999999999999999999875 6789


Q ss_pred             EEEEecCC
Q psy9257         422 RVVIRDRP  429 (530)
Q Consensus       422 tLtVrR~~  429 (530)
                      +|+|.+..
T Consensus        95 ~l~v~~~~  102 (117)
T d1v62a_          95 RLEILPVP  102 (117)
T ss_dssp             EEEECCBT
T ss_pred             EEEEEECC
Confidence            99988754

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.7e-11  Score=102.16  Aligned_cols=72  Identities=19%  Similarity=0.321  Sum_probs=63.9

Q ss_pred             CCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         357 SGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       357 ~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      ...|||++.++.   .+++|..|.++++|+++||+.||+|++|||+.+.++++.++..+++.+ +..|.|+|+|..
T Consensus        15 ~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~~   89 (94)
T d1vb7a_          15 PAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS-ASPLRLQLDRSS   89 (94)
T ss_dssp             SSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEECCC
T ss_pred             CCcCCEEEEeeccCCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            456899998643   578999999999999999999999999999999999999999999875 578999998853

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.4e-11  Score=98.42  Aligned_cols=76  Identities=25%  Similarity=0.527  Sum_probs=67.3

Q ss_pred             CceeeEEeccCCCCccceeeccC----------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG----------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G----------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ++.++|+|.|+..+ |||.+.+|          .|..|.++|+|+++| |+.||+|++|||.++.+++++++..+|++++
T Consensus         1 P~~~~V~l~K~~~~-lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~   79 (88)
T d2fnea1           1 PQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK   79 (88)
T ss_dssp             CEEEEEEECCBTTB-TSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CeEEEEEEEeCCCc-cCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35678889887654 99999743          188999999999998 9999999999999999999999999999999


Q ss_pred             CEEEEEEE
Q psy9257         498 SVLTLTLI  505 (530)
Q Consensus       498 ~tVtLtVi  505 (530)
                      +.++|+|.
T Consensus        80 ~~v~L~Vl   87 (88)
T d2fnea1          80 GTVTLMVL   87 (88)
T ss_dssp             SSEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999985

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=6.1e-11  Score=100.39  Aligned_cols=78  Identities=24%  Similarity=0.404  Sum_probs=69.1

Q ss_pred             ceeeEEeccCCCCccceeeccCc------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~Gv------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      +.++|+|.|+.. .|||.+.+|.      |..|.++|+|+++| |+.||+|++|||+++.+++++++..+|+++++.++|
T Consensus         9 ~~r~V~l~k~~~-glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L   87 (102)
T d1tp5a1           9 EPRRIVIHRGST-GLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI   87 (102)
T ss_dssp             SCEEEEEECTTS-CCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEE
T ss_pred             CCEEEEEEeCCC-cccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEE
Confidence            457788888654 5999997542      89999999999998 999999999999999999999999999999999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.+..
T Consensus        88 ~v~~~~   93 (102)
T d1tp5a1          88 IAQYKP   93 (102)
T ss_dssp             EEEECH
T ss_pred             EEEECC
Confidence            998754

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.3e-11  Score=99.37  Aligned_cols=76  Identities=20%  Similarity=0.323  Sum_probs=66.8

Q ss_pred             eeeEEeccCCCCccceeeccC-------------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      .++|+|.|+.. .|||.+.++             .|.+|.++|+|+++| |+.||+|++|||+++.+++++++..+|+++
T Consensus         3 ~~~V~L~k~~~-glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~   81 (94)
T d1wf8a1           3 LFPVELEKDED-GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT   81 (94)
T ss_dssp             EEEEEEECBTT-BSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC
T ss_pred             EEEEEEEeCCC-CcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            35677877665 499998632             289999999999999 999999999999999999999999999999


Q ss_pred             CCEEEEEEEeC
Q psy9257         497 GSVLTLTLIPT  507 (530)
Q Consensus       497 G~tVtLtVip~  507 (530)
                      ++.++|+|.|.
T Consensus        82 ~~~v~L~V~R~   92 (94)
T d1wf8a1          82 KGNVRFVIGRE   92 (94)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEeC
Confidence            99999999875

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.2e-11  Score=98.16  Aligned_cols=78  Identities=31%  Similarity=0.464  Sum_probs=67.0

Q ss_pred             CceeeEEeccCCCCccceeeccC---------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG---------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G---------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      ++.+++++.+..  .|||.+.++         . |..|.++|+|+++| |+.||+|++|||+++.+++++++..+|++++
T Consensus         3 pei~~v~l~~~~--glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~   80 (92)
T d1t2ma1           3 PEIITVTLKKQN--GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   80 (92)
T ss_dssp             CEEEEEEEECSS--SCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CeEEEEEEeCCC--ccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCC
Confidence            445566666653  399998532         2 89999999999999 9999999999999999999999999999999


Q ss_pred             CEEEEEEEeCc
Q psy9257         498 SVLTLTLIPTS  508 (530)
Q Consensus       498 ~tVtLtVip~~  508 (530)
                      +.++|+|.|+.
T Consensus        81 ~~v~L~v~R~g   91 (92)
T d1t2ma1          81 SVVTLEVAKQG   91 (92)
T ss_dssp             SEEEEEEEECC
T ss_pred             CeEEEEEEeCC
Confidence            99999998864

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=9.9e-11  Score=97.58  Aligned_cols=77  Identities=27%  Similarity=0.404  Sum_probs=67.8

Q ss_pred             eeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL  502 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL  502 (530)
                      ..+|+|+++. +.|||.+.++       .|..|.++++|+++| |+.||+|++|||+++.+++++++..+|+..++.++|
T Consensus         4 i~tV~l~k~~-~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l   82 (95)
T d1n7ea_           4 IYTVELKRYG-GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL   82 (95)
T ss_dssp             EEEEEEECTT-SCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             EEEEEEEECC-CcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            3567777764 5699999744       299999999999999 999999999999999999999999999999999999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.+..
T Consensus        83 ~v~r~~   88 (95)
T d1n7ea_          83 KIKKQT   88 (95)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            998864

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.9e-11  Score=95.35  Aligned_cols=74  Identities=27%  Similarity=0.452  Sum_probs=62.8

Q ss_pred             ceEEEec-cCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257         348 RELVLCK-DASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR  426 (530)
Q Consensus       348 r~V~L~K-~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr  426 (530)
                      ..+.+.+ +....|||++.+    .+|..|.+||+|+++||+.||+|++|||+.+.+++++++.++++.+ +..+.|+|.
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~----g~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~-~~~v~l~vi   76 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQN----GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA-VGEIHMKTM   76 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEET----TEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHC-CEEEEEEEE
T ss_pred             EEEEEEcCCCCCCcCEEEEC----CEEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcC-CCEEEEEEE
Confidence            3455555 456779999973    3799999999999999999999999999999999999999999875 467888764

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=8.9e-11  Score=98.49  Aligned_cols=79  Identities=25%  Similarity=0.461  Sum_probs=67.0

Q ss_pred             ceEEEecc-CCCeeEEEEEec------------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHH
Q psy9257         348 RELVLCKD-ASGLIGLRVCAI------------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKIL  413 (530)
Q Consensus       348 r~V~L~K~-s~G~LG~~V~~~------------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LL  413 (530)
                      |+|.+.|. ....|||++.++            ..|+||..|.++|+|+++| |+.||+|++|||..+.+++++++..+|
T Consensus         4 r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l   83 (98)
T d1rzxa_           4 RRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM   83 (98)
T ss_dssp             EEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHH
Confidence            56777664 455699999753            2479999999999999999 999999999999999999999999999


Q ss_pred             HhCCCCeEEEEEec
Q psy9257         414 KAAPVNNIRVVIRD  427 (530)
Q Consensus       414 k~a~G~~VtLtVrR  427 (530)
                      +.. +..++|+|+.
T Consensus        84 ~~~-~~~v~l~v~p   96 (98)
T d1rzxa_          84 VAN-SSNLIITVKP   96 (98)
T ss_dssp             HHT-CTEEEEEEEC
T ss_pred             HcC-CCeEEEEEEe
Confidence            875 5678888764

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.4e-11  Score=105.51  Aligned_cols=80  Identities=25%  Similarity=0.412  Sum_probs=71.1

Q ss_pred             CceeeEEeccCCCCccceeeccC---------------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHH
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKG---------------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLE  491 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~G---------------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~  491 (530)
                      +..++|+|.|+....|||.+.+|               . |..|.++++|+++| |++||+|++|||++|.++++++++.
T Consensus         8 ~~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~   87 (111)
T d1ujua_           8 PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQ   87 (111)
T ss_dssp             CSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHH
T ss_pred             CCeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHH
Confidence            34577888888877899999643               2 89999999999999 9999999999999999999999999


Q ss_pred             HHHhCCCEEEEEEEeCc
Q psy9257         492 AMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       492 iLkrsG~tVtLtVip~~  508 (530)
                      +|+++++.++|+|.|..
T Consensus        88 ~lk~~~~~v~L~V~r~~  104 (111)
T d1ujua_          88 LLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HHSSCSSEEEECCCCCC
T ss_pred             HHHcCCCeEEEEEEECC
Confidence            99999999999998764

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.7e-11  Score=102.43  Aligned_cols=79  Identities=22%  Similarity=0.345  Sum_probs=67.2

Q ss_pred             eEEEeccCCCeeEEEEEec---CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAI---NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRV  423 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtL  423 (530)
                      +|.+.|... +|||++.+.   ..+++|..|.++++|+++| |+.||+|++|||+.+.+++++++.++|+.+. ...|+|
T Consensus        12 ~V~l~k~~~-glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l   90 (103)
T d1uepa_          12 DVHLRRMES-GFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNL   90 (103)
T ss_dssp             CCEEESSSS-SCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEE
T ss_pred             EEEEEeCCc-eEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEE
Confidence            456666654 499999863   3569999999999999999 9999999999999999999999999998754 357889


Q ss_pred             EEecC
Q psy9257         424 VIRDR  428 (530)
Q Consensus       424 tVrR~  428 (530)
                      +|+|.
T Consensus        91 ~v~r~   95 (103)
T d1uepa_          91 TVRRK   95 (103)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            88874

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=7.4e-11  Score=98.81  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=69.6

Q ss_pred             ceeeEEeccCCCCccceeeccC--------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG--------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSV  499 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G--------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~t  499 (530)
                      ..++++|.+.....|||.+..+        . |..|.++|+|+++| |+.||+|++|||+.+.+++++++..+|+.+++.
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~   89 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL   89 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred             CcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCe
Confidence            4567778777777799998632        2 99999999999999 999999999999999999999999999999999


Q ss_pred             EEEEEEeCc
Q psy9257         500 LTLTLIPTS  508 (530)
Q Consensus       500 VtLtVip~~  508 (530)
                      ++|+|.|+.
T Consensus        90 v~L~V~r~~   98 (99)
T d1p1da2          90 VKLKIRKDE   98 (99)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            999998764

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2e-11  Score=107.26  Aligned_cols=81  Identities=20%  Similarity=0.283  Sum_probs=72.0

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVV  424 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLt  424 (530)
                      +.++.+.++..| |||.+...+.+++|..|.++++|+++| |+.||+|++|||+.+.+++++++.++|+..+ +..|+|+
T Consensus        28 ~~~v~l~~g~~G-lG~~i~~~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~  106 (126)
T d1wifa_          28 VIQTKLTVGNLG-LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK  106 (126)
T ss_dssp             EEEEEEECCTTC-CCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEE
T ss_pred             EEEEEEeeCCCc-EEEEEEecCCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEE
Confidence            335666776555 999999888899999999999999999 9999999999999999999999999998864 6899999


Q ss_pred             EecC
Q psy9257         425 IRDR  428 (530)
Q Consensus       425 VrR~  428 (530)
                      |+|.
T Consensus       107 v~R~  110 (126)
T d1wifa_         107 AYRG  110 (126)
T ss_dssp             EESS
T ss_pred             EEeC
Confidence            9985

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.1e-10  Score=98.46  Aligned_cols=77  Identities=25%  Similarity=0.431  Sum_probs=69.0

Q ss_pred             eeeEEeccCCCCccceeeccCc----EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI  505 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~Gv----V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi  505 (530)
                      .+.+.|.|...+.|||.++++.    |..|.++|+|+++| |+.||+|++|||+++.+++++++..+|+.+++.++|+|+
T Consensus        19 i~~V~l~k~~~~~lG~~v~~~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~v~   98 (100)
T d1va8a1          19 VKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI   98 (100)
T ss_dssp             CEEEEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEE
T ss_pred             EEEEEEEeCCCCCccEEEEecCCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEEEE
Confidence            3567788887778999997542    99999999999999 999999999999999999999999999999999999998


Q ss_pred             eC
Q psy9257         506 PT  507 (530)
Q Consensus       506 p~  507 (530)
                      |.
T Consensus        99 P~  100 (100)
T d1va8a1          99 PS  100 (100)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.3e-11  Score=102.96  Aligned_cols=78  Identities=31%  Similarity=0.555  Sum_probs=66.6

Q ss_pred             EEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeE
Q psy9257         350 LVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNI  421 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~V  421 (530)
                      +.+.+...++|||.+.++      ..|+||..|.+||+|+++| |+.||+|++|||..+.+++++++..+++.+. +..+
T Consensus        22 ~~~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v  101 (108)
T d2cssa1          22 TTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQV  101 (108)
T ss_dssp             SCCSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCE
T ss_pred             EEEecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEE
Confidence            334456677899999864      2389999999999999999 9999999999999999999999999998754 4678


Q ss_pred             EEEEec
Q psy9257         422 RVVIRD  427 (530)
Q Consensus       422 tLtVrR  427 (530)
                      +|+|+|
T Consensus       102 ~l~v~R  107 (108)
T d2cssa1         102 EIIVSR  107 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            888876

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.2e-11  Score=99.18  Aligned_cols=85  Identities=25%  Similarity=0.370  Sum_probs=70.4

Q ss_pred             CCceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257         428 RPLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL  500 (530)
Q Consensus       428 ~~~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV  500 (530)
                      ..+++.+.|.+.....|||.+.+|.       |..|.++++|+++||+.||+|++|||+++.+++++++..+|+.++. +
T Consensus         6 ~~~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~-~   84 (101)
T d1x5na1           6 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-L   84 (101)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCSS-E
T ss_pred             CCccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCCC-E
Confidence            3456778887766667999998542       9999999999999999999999999999999999999999998765 7


Q ss_pred             EEEEEeCcchhhh
Q psy9257         501 TLTLIPTSMYQHM  513 (530)
Q Consensus       501 tLtVip~~~~e~m  513 (530)
                      +++|.+....+.+
T Consensus        85 ~l~v~~~~g~e~~   97 (101)
T d1x5na1          85 TISIVAAAGRELF   97 (101)
T ss_dssp             EEEECSSTTTHHH
T ss_pred             EEEEEECCCCccc
Confidence            7777766545444

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.6e-11  Score=100.36  Aligned_cols=77  Identities=22%  Similarity=0.441  Sum_probs=67.8

Q ss_pred             eeeEEeccCCCCccceeeccC------------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG------------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG  496 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G------------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs  496 (530)
                      .+.+.|.|+..+ |||.+.+|            . |..|.++++|+++| |++||+|++|||++|.+++++++..+|+++
T Consensus         8 ~~~v~l~k~~~g-lGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~   86 (105)
T d1whaa_           8 RHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             EEEEEECCCTTC-CSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             CEEEEEEECCCc-cCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC
Confidence            456777777665 99999743            2 99999999999998 999999999999999999999999999999


Q ss_pred             CCEEEEEEEeCc
Q psy9257         497 GSVLTLTLIPTS  508 (530)
Q Consensus       497 G~tVtLtVip~~  508 (530)
                      +..++|+|.|..
T Consensus        87 ~~~v~l~v~R~~   98 (105)
T d1whaa_          87 SPTIALLLEREA   98 (105)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCeEEEEEEECC
Confidence            999999998764

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.3e-11  Score=101.09  Aligned_cols=81  Identities=30%  Similarity=0.437  Sum_probs=66.8

Q ss_pred             cceEEEeccC-CCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257         347 IRELVLCKDA-SGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR  422 (530)
Q Consensus       347 Vr~V~L~K~s-~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt  422 (530)
                      ++.|.+.+.. ...|||.+.+.   ..+++|..|.++++|+++||+.||+|++|||+.+.++++.++.++|+..  ..+.
T Consensus         9 ~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~--~~~~   86 (101)
T d1ueza_           9 VRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS--KKLV   86 (101)
T ss_dssp             CEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSS--SSCC
T ss_pred             EEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcC--CCEE
Confidence            4566666643 34699999863   3589999999999999999999999999999999999999999999765  3466


Q ss_pred             EEEecCC
Q psy9257         423 VVIRDRP  429 (530)
Q Consensus       423 LtVrR~~  429 (530)
                      |+|+|++
T Consensus        87 l~V~~~~   93 (101)
T d1ueza_          87 LSVYSAG   93 (101)
T ss_dssp             EEECCCC
T ss_pred             EEEEECC
Confidence            7777654

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=1.5e-10  Score=96.99  Aligned_cols=76  Identities=33%  Similarity=0.491  Sum_probs=65.1

Q ss_pred             eeEEeccCC-CCccceeeccC---------------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHH
Q psy9257         432 RTVTLHRDS-SGHFGFHFNKG---------------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAM  493 (530)
Q Consensus       432 ~tVtL~kd~-~g~LGfs~~~G---------------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iL  493 (530)
                      ++|+|.+.. ...|||.+.+|               . |..|.++|+|+++| |+.||+|++|||+++.+++++++..+|
T Consensus         4 r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l   83 (98)
T d1rzxa_           4 RRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM   83 (98)
T ss_dssp             EEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHH
Confidence            456666553 34589988633               2 89999999999999 999999999999999999999999999


Q ss_pred             HhCCCEEEEEEEeC
Q psy9257         494 EKGGSVLTLTLIPT  507 (530)
Q Consensus       494 krsG~tVtLtVip~  507 (530)
                      ++++..++|+|.|.
T Consensus        84 ~~~~~~v~l~v~p~   97 (98)
T d1rzxa_          84 VANSSNLIITVKPA   97 (98)
T ss_dssp             HHTCTEEEEEEECC
T ss_pred             HcCCCeEEEEEEeC
Confidence            99999999999864

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=6.6e-11  Score=100.06  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             ceEEEeccCCCeeEEEEEec---------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257         348 RELVLCKDASGLIGLRVCAI---------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV  418 (530)
Q Consensus       348 r~V~L~K~s~G~LG~~V~~~---------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G  418 (530)
                      +.|.+.|+..++|||++.++         ..|++|..|.+||+|+ ++|+.||+|++|||..+.+++++++..+|+.+ +
T Consensus         9 ~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~-~   86 (104)
T d2csja1           9 YTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS-G   86 (104)
T ss_dssp             EEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS-C
T ss_pred             EEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            46778888788899999863         2579999999999997 67999999999999999999999999999875 5


Q ss_pred             CeEEEEEecC
Q psy9257         419 NNIRVVIRDR  428 (530)
Q Consensus       419 ~~VtLtVrR~  428 (530)
                      ..+.|+|+|.
T Consensus        87 ~~v~l~V~R~   96 (104)
T d2csja1          87 KIAAIVVKRP   96 (104)
T ss_dssp             SEEEEEEEEE
T ss_pred             CEEEEEEEeC
Confidence            7899999875

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.6e-12  Score=106.77  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=65.2

Q ss_pred             CCCeeEEEEEec------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEE
Q psy9257         356 ASGLIGLRVCAI------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIR  422 (530)
Q Consensus       356 s~G~LG~~V~~~------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~Vt  422 (530)
                      .+||||+++...            ..|++|..|.++|||+++||+.||+|++|||+.|.++.+  +..++.. ..++.+.
T Consensus         2 ~Rg~lGi~~~~l~~~~~~~~gl~~~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~~~~--l~~~l~~~~~g~~v~   79 (94)
T d1ky9a1           2 KRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLT   79 (94)
T ss_dssp             CBCCCCCSCCCTTSHHHHTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHH--HHHHTTSSBTTCCCE
T ss_pred             eeeeeeEEEEECCHHHHHHcCCCCCCCcEEEECCCChhHHHhCCCcccEEEEECCEEeCCHHH--HHHHHHhCCCCCEEE
Confidence            356666665542            369999999999999999999999999999999999766  5666654 3578899


Q ss_pred             EEEecCCceeeEEec
Q psy9257         423 VVIRDRPLERTVTLH  437 (530)
Q Consensus       423 LtVrR~~~e~tVtL~  437 (530)
                      |+|.|+++.++++|+
T Consensus        80 l~v~R~g~~~~~~vk   94 (94)
T d1ky9a1          80 LGLLRDGKQVNVNLE   94 (94)
T ss_dssp             EEEESSSCEEECCCC
T ss_pred             EEEEECCEEEEEEEC
Confidence            999999988887653

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.6e-10  Score=96.63  Aligned_cols=79  Identities=24%  Similarity=0.362  Sum_probs=64.6

Q ss_pred             cceEEEeccCCCeeEEEEEec-----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC---
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP---  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~---  417 (530)
                      ++.+.+.+.  .+|||++.++     ..+++|..|.+||+|+++| |+.||+|++|||+.+.+++++++..+|+.+.   
T Consensus         9 ~~~v~~~~~--~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~   86 (96)
T d1wi4a1           9 FRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRS   86 (96)
T ss_dssp             EEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSS
T ss_pred             EEEEEecCC--CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCC
Confidence            344555553  3599999864     2579999999999999999 9999999999999999999999999998763   


Q ss_pred             CCeEEEEEec
Q psy9257         418 VNNIRVVIRD  427 (530)
Q Consensus       418 G~~VtLtVrR  427 (530)
                      ...+.|.+.|
T Consensus        87 ~~~vel~~~R   96 (96)
T d1wi4a1          87 ESPWEIAFIR   96 (96)
T ss_dssp             SSCEEEEEEC
T ss_pred             CCeEEEEEEC
Confidence            4557776654

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.10  E-value=2e-10  Score=95.50  Aligned_cols=77  Identities=22%  Similarity=0.258  Sum_probs=67.1

Q ss_pred             CeeEEEEEecCCcEEEEEeccC--------CHhhhcCC-CCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257         358 GLIGLRVCAINEGVFVCLVERG--------SPASLVGL-RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR  428 (530)
Q Consensus       358 G~LG~~V~~~~~GV~Vs~V~pG--------SPAakAGL-q~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~  428 (530)
                      |+||+.++-.+.++.|..|.+|        |||+++|| +.||+|++|||+.+.++.+  +..+++...+..|.|+|.|.
T Consensus         1 G~lG~d~~~~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~~--~~~~l~g~~G~~V~L~i~R~   78 (91)
T d1k32a1           1 GRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSN--IYRVLSEKAGTSARIRLSGK   78 (91)
T ss_dssp             CBCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTBC--HHHHHHTTTTSEEEEEEECS
T ss_pred             CcccEEEEEECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcce--eEEEEecCCCCEEEEEEEeC
Confidence            5689999888899999999987        99999999 8999999999999999876  78888898999999999996


Q ss_pred             C-ceeeEEe
Q psy9257         429 P-LERTVTL  436 (530)
Q Consensus       429 ~-~e~tVtL  436 (530)
                      + ..+++.+
T Consensus        79 g~~~r~~~V   87 (91)
T d1k32a1          79 GGDKRDLMI   87 (91)
T ss_dssp             SSCEEEEEE
T ss_pred             CCCEEEEEE
Confidence            4 3455554

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=5.6e-12  Score=105.82  Aligned_cols=69  Identities=20%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEec
Q psy9257         368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       368 ~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~  437 (530)
                      ..|++|..|.++|||+++||+.||+|++|||+.|.++.+ ....+.+...++.+.|+|.|+++++++++.
T Consensus        25 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~~~-l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   93 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALE-TMDQVAEIRPGSVIPVVVMRDDKQLTLQVT   93 (99)
T ss_dssp             --CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCCSHH-HHHHHHHSCTTCEEEECC-----CCCEEEE
T ss_pred             CCccEEEEecCCCCHHHcCCCcceEEEEECCEecccHHH-HHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence            479999999999999999999999999999999998765 334444566789999999998877666553

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.8e-10  Score=100.50  Aligned_cols=82  Identities=22%  Similarity=0.436  Sum_probs=68.2

Q ss_pred             ccceEEEeccCCCeeEEEEEec-------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257         346 GIRELVLCKDASGLIGLRVCAI-------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP  417 (530)
Q Consensus       346 ~Vr~V~L~K~s~G~LG~~V~~~-------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~  417 (530)
                      ..++|.+.++...+|||++.+.       ..+++|..|.++++|+++| |+.||+|++|||+.+.+++++++.++|+.+.
T Consensus        15 ~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~   94 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             eeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            4457888888778899999863       2569999999999999999 9999999999999999999999999998764


Q ss_pred             C-CeEEEEEec
Q psy9257         418 V-NNIRVVIRD  427 (530)
Q Consensus       418 G-~~VtLtVrR  427 (530)
                      . ..+.|.+.+
T Consensus        95 ~~~~l~l~~~~  105 (122)
T d1v5qa_          95 ITSKVTLEIEF  105 (122)
T ss_dssp             TTTCEEEEEEE
T ss_pred             CceEEEEEEec
Confidence            3 334444433

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.6e-10  Score=97.60  Aligned_cols=77  Identities=23%  Similarity=0.357  Sum_probs=68.1

Q ss_pred             eeeEEeccCCCCccceeeccC-------------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG-------------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G-------------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      .++++|.|+..+.|||.+.+|             .|..|.++|+|+ ++|+.||+|++|||+++.+++++++..+|++++
T Consensus         8 ~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~   86 (104)
T d2csja1           8 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG   86 (104)
T ss_dssp             EEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSC
T ss_pred             cEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            467888888887899998643             289999999997 679999999999999999999999999999999


Q ss_pred             CEEEEEEEeCc
Q psy9257         498 SVLTLTLIPTS  508 (530)
Q Consensus       498 ~tVtLtVip~~  508 (530)
                      ..++|+|.|..
T Consensus        87 ~~v~l~V~R~~   97 (104)
T d2csja1          87 KIAAIVVKRPR   97 (104)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CEEEEEEEeCC
Confidence            99999998753

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.1e-10  Score=98.55  Aligned_cols=77  Identities=30%  Similarity=0.450  Sum_probs=66.0

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GSV  499 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~t  499 (530)
                      ++++|+|.++..+ |||.+.+|       .|..|.++++|+++| |+.||+|++|||++|.++++++++.+|+.+  +..
T Consensus         9 ~~~~V~l~k~~~g-lG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~   87 (103)
T d1uepa_           9 KELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ   87 (103)
T ss_dssp             EEECCEEESSSSS-CCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             EEEEEEEEeCCce-EeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCE
Confidence            4566778777655 99999754       299999999999998 999999999999999999999999999865  468


Q ss_pred             EEEEEEeC
Q psy9257         500 LTLTLIPT  507 (530)
Q Consensus       500 VtLtVip~  507 (530)
                      |+|+|.|.
T Consensus        88 v~l~v~r~   95 (103)
T d1uepa_          88 VNLTVRRK   95 (103)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            99988764

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-10  Score=99.78  Aligned_cols=78  Identities=19%  Similarity=0.285  Sum_probs=68.3

Q ss_pred             ceeeEEeccCCCCccceeeccCc-----EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~Gv-----V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      +.++|+|.|... .|||.+.+|.     |..|.++++|+++||+.||+|++|||++|.+++++++..+|+.+++.++|+|
T Consensus        19 ~~r~v~l~k~~~-glG~~i~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v   97 (117)
T d1uita_          19 EPRHVKVQKGSE-PLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA   97 (117)
T ss_dssp             CCEEEEEECSSC-CCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEE
T ss_pred             CCEEEEEEeCCC-ccCEEEEccCCCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEE
Confidence            346778887654 4999997543     9999999999999999999999999999999999999999999999999999


Q ss_pred             EeCc
Q psy9257         505 IPTS  508 (530)
Q Consensus       505 ip~~  508 (530)
                      .+..
T Consensus        98 ~~~p  101 (117)
T d1uita_          98 QYNP  101 (117)
T ss_dssp             CCCS
T ss_pred             EECC
Confidence            7654

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.6e-10  Score=97.62  Aligned_cols=71  Identities=21%  Similarity=0.367  Sum_probs=62.5

Q ss_pred             CCeeEEEEEec--------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257         357 SGLIGLRVCAI--------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD  427 (530)
Q Consensus       357 ~G~LG~~V~~~--------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR  427 (530)
                      ..+|||++.++        ..|++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+|++. +..|.|+|+|
T Consensus        29 g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~-~~~v~l~v~r  107 (117)
T d1ujda_          29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQ-SGEAEICVRL  107 (117)
T ss_dssp             CCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCC-SSCEEEEEES
T ss_pred             CcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcC-CCeEEEEEEE
Confidence            35699999752        2479999999999999999 999999999999999999999999999765 4679999988


Q ss_pred             C
Q psy9257         428 R  428 (530)
Q Consensus       428 ~  428 (530)
                      .
T Consensus       108 ~  108 (117)
T d1ujda_         108 D  108 (117)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=6.6e-11  Score=101.47  Aligned_cols=75  Identities=16%  Similarity=0.292  Sum_probs=65.2

Q ss_pred             eeeEEeccCCCCccceeeccCc---EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC-CCEEEEEEEe
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKGQ---IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG-GSVLTLTLIP  506 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~Gv---V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs-G~tVtLtVip  506 (530)
                      .++|+|.++..+ |||.+.++.   |..|.++++|+++||+.||+|++|||++|.++++++++++|+.+ +..++|+|.+
T Consensus        16 pr~v~l~k~~~g-~Gf~i~g~~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          16 PRGIHFTVEEGD-LGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             CCCCCEECCSSC-CSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             CEEEEEEECCCc-cCEEEECCccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEEC
Confidence            356778777654 999997653   89999999999999999999999999999999999999999976 5688888864

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.3e-10  Score=98.54  Aligned_cols=76  Identities=16%  Similarity=0.396  Sum_probs=64.1

Q ss_pred             eeeEEeccCCCCccceeeccC--------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG--------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G--------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      .+.+.|.+...+.|||.+.+|        .|..|.++|+|+++| |++||+|++|||+.+.+++++++..+|+.++..+.
T Consensus         9 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~   88 (107)
T d1x6da1           9 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ   88 (107)
T ss_dssp             EEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSE
T ss_pred             cEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEE
Confidence            355667777777799999744        299999999999998 99999999999999999999999999998776665


Q ss_pred             EEEEe
Q psy9257         502 LTLIP  506 (530)
Q Consensus       502 LtVip  506 (530)
                      +++.+
T Consensus        89 l~v~~   93 (107)
T d1x6da1          89 AVIVT   93 (107)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.7e-11  Score=99.80  Aligned_cols=78  Identities=24%  Similarity=0.452  Sum_probs=67.9

Q ss_pred             eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257         349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV  424 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt  424 (530)
                      .|.+.|+..+ |||++.++.   .+++|..|.++++|+++| |+.||+|++|||+.+.++++.++.++|+.. +..|.|+
T Consensus        14 ~v~l~k~~~g-lG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~-~~~v~l~   91 (103)
T d1wfva_          14 TVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG-GRRVRLL   91 (103)
T ss_dssp             ECCEECCTTS-SSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH-CSEECEE
T ss_pred             EEEEEeCCCc-cCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcC-CCEEEEE
Confidence            4566676554 999998643   479999999999999999 999999999999999999999999999875 5789999


Q ss_pred             EecC
Q psy9257         425 IRDR  428 (530)
Q Consensus       425 VrR~  428 (530)
                      |+|.
T Consensus        92 v~R~   95 (103)
T d1wfva_          92 LKRG   95 (103)
T ss_dssp             EECT
T ss_pred             EEEC
Confidence            9885

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.5e-10  Score=96.86  Aligned_cols=79  Identities=24%  Similarity=0.406  Sum_probs=67.4

Q ss_pred             CceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CC
Q psy9257         429 PLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GS  498 (530)
Q Consensus       429 ~~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~  498 (530)
                      ++.++++|.++..+ |||.+.+|.       |..|.++++|+++| |++||+|++|||++|.++++++++.+|+..  +.
T Consensus        18 ~~~~~v~l~k~~~g-lG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~   96 (123)
T d1ueqa_          18 GTFLSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQ   96 (123)
T ss_dssp             SEEEEEEEECCTTS-CSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             CeEEEEEEEECCCe-eCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence            34556677776654 999997542       99999999999998 999999999999999999999999999965  68


Q ss_pred             EEEEEEEeCc
Q psy9257         499 VLTLTLIPTS  508 (530)
Q Consensus       499 tVtLtVip~~  508 (530)
                      .+.|+|.|..
T Consensus        97 ~v~L~v~R~~  106 (123)
T d1ueqa_          97 SVNLVLCRGY  106 (123)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEEcCC
Confidence            9999998854

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.04  E-value=1.6e-10  Score=95.78  Aligned_cols=76  Identities=21%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             eeEEeccCCCCccceeeccC--------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh---CCC
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG--------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK---GGS  498 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G--------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr---sG~  498 (530)
                      .+|+|.++..+.|||.+.+|        . |.+|.++|+|+++| |++||+|++|||+++.+++++++..+|+.   ...
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~   82 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPG   82 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCC
Confidence            46778777667799999643        2 88999999999999 99999999999999999999999999974   345


Q ss_pred             EEEEEEEeC
Q psy9257         499 VLTLTLIPT  507 (530)
Q Consensus       499 tVtLtVip~  507 (530)
                      .++|+|.|.
T Consensus        83 ~v~L~V~R~   91 (92)
T d2f0aa1          83 PIVLTVAKL   91 (92)
T ss_dssp             CEEEEEECC
T ss_pred             cEEEEEEeC
Confidence            789998875

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=2.8e-10  Score=96.45  Aligned_cols=73  Identities=26%  Similarity=0.376  Sum_probs=61.6

Q ss_pred             eeEEeccCCCCccceeeccC-----c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG-----Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL  504 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G-----v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV  504 (530)
                      ++|+|.++..+.|||.+.++     . |..|.++|+|+++| |+.||+|++|||+.+.+++++++..+|+.+...+.+.+
T Consensus         3 ~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l   82 (112)
T d1qaua_           3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   82 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred             EEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEE
Confidence            46777777777899999643     2 89999999999999 99999999999999999999999999997655443433

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1.1e-10  Score=97.10  Aligned_cols=67  Identities=21%  Similarity=0.342  Sum_probs=60.7

Q ss_pred             CccceeeccCc-------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         442 GHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       442 g~LGfs~~~Gv-------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      ..|||.+.+|.       |..|.++++|+++||+.||+|++|||++|.+++++++..+|++++..++|+|.|..
T Consensus        16 ~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~   89 (94)
T d1vb7a_          16 APWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS   89 (94)
T ss_dssp             SCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCC
T ss_pred             CcCCEEEEeeccCCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            45899987542       77899999999999999999999999999999999999999999999999998754

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3e-10  Score=95.35  Aligned_cols=79  Identities=32%  Similarity=0.565  Sum_probs=67.1

Q ss_pred             cceEEEeccCCCeeEEEEEec-------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-
Q psy9257         347 IRELVLCKDASGLIGLRVCAI-------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP-  417 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~-------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~-  417 (530)
                      ..+|.+.++..++|||.+.++       ..+++|..|.++|+|+++| |+.||+|++|||..+.+++++++.++|++.. 
T Consensus         9 ~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~   88 (99)
T d1x5ra1           9 TTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAAL   88 (99)
T ss_dssp             EEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHT
T ss_pred             eEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            346888888888899999853       3679999999999999999 9999999999999999999999999998653 


Q ss_pred             CCeEEEEE
Q psy9257         418 VNNIRVVI  425 (530)
Q Consensus       418 G~~VtLtV  425 (530)
                      ...+.|.+
T Consensus        89 ~~~l~l~v   96 (99)
T d1x5ra1          89 AHKVVLEV   96 (99)
T ss_dssp             TTCEEEEE
T ss_pred             CCEEEEEE
Confidence            34555554

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=3.4e-10  Score=98.21  Aligned_cols=73  Identities=29%  Similarity=0.386  Sum_probs=63.8

Q ss_pred             CCeeEEEEEecC----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC---CCCeEEEEEecC
Q psy9257         357 SGLIGLRVCAIN----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA---PVNNIRVVIRDR  428 (530)
Q Consensus       357 ~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a---~G~~VtLtVrR~  428 (530)
                      .+.|||.+.++.    .+++|..|.++|+|+++| |+.||+|++|||..+.+++++++..+|+++   .+..|+|+|.|.
T Consensus        27 ~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          27 EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             CSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeC
Confidence            457999998753    369999999999999999 999999999999999999999999999864   357799999885


Q ss_pred             C
Q psy9257         429 P  429 (530)
Q Consensus       429 ~  429 (530)
                      +
T Consensus       107 p  107 (118)
T d1v6ba_         107 P  107 (118)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=2e-10  Score=100.79  Aligned_cols=80  Identities=29%  Similarity=0.442  Sum_probs=67.0

Q ss_pred             eEEEeccCCCeeEEEEEec-------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC---
Q psy9257         349 ELVLCKDASGLIGLRVCAI-------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP---  417 (530)
Q Consensus       349 ~V~L~K~s~G~LG~~V~~~-------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~---  417 (530)
                      +|.+.+....+|||++.+.       ..+++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+|+++.   
T Consensus        28 ~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~  107 (127)
T d1wg6a_          28 EIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME  107 (127)
T ss_dssp             EEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhccccc
Confidence            4555555556699999752       2479999999999999999 9999999999999999999999999998652   


Q ss_pred             ---CCeEEEEEecC
Q psy9257         418 ---VNNIRVVIRDR  428 (530)
Q Consensus       418 ---G~~VtLtVrR~  428 (530)
                         ...|.|+|.|.
T Consensus       108 ~~~~~~V~L~V~R~  121 (127)
T d1wg6a_         108 GNIRGMIQLVILRR  121 (127)
T ss_dssp             HHHTCEEEEEEEEC
T ss_pred             CCCCCEEEEEEeeC
Confidence               46789998875

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.2e-10  Score=96.16  Aligned_cols=83  Identities=17%  Similarity=0.335  Sum_probs=69.5

Q ss_pred             ceeeEEeccCCCCccceeeccC-------cEEEEccCCHHHHc--CCCCCCEEEEEcCeecCCCChHHHHHHHHhC----
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARN--GLLVNHNILEVNGANVVGLKDKELLEAMEKG----  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-------vV~sVv~gSpAarA--GLr~GDrILeVNGq~V~gls~eeVv~iLkrs----  496 (530)
                      ..++|+|.++..+.|||.+.+|       .|..|.++++|+++  +|+.||+|++|||+++.+++++++..+|+.+    
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~   87 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH   87 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCC
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            3456778888888899999754       28899999999986  6999999999999999999999999999853    


Q ss_pred             CCEEEEEEEeCcchhh
Q psy9257         497 GSVLTLTLIPTSMYQH  512 (530)
Q Consensus       497 G~tVtLtVip~~~~e~  512 (530)
                      ..++.|+|.|...++.
T Consensus        88 ~~~v~L~vrp~~~~~~  103 (106)
T d2cs5a1          88 SGELMLLVRPNAVYDV  103 (106)
T ss_dssp             SSCEEEEEECCCCCCC
T ss_pred             CcEEEEEECCCCCCCc
Confidence            3478999988766554

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.5e-10  Score=97.95  Aligned_cols=78  Identities=29%  Similarity=0.543  Sum_probs=68.1

Q ss_pred             ceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.++|+|.++..+ |||.+.+|.       |..|.++++|+++| |++||+|++|||+++.++++++++.+|+..++.++
T Consensus        11 e~~~v~l~k~~~g-lG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~   89 (103)
T d1wfva_          11 DYFTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR   89 (103)
T ss_dssp             CCEECCEECCTTS-SSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEEC
T ss_pred             eEEEEEEEeCCCc-cCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEE
Confidence            4567778777654 999996432       78999999999999 99999999999999999999999999998899999


Q ss_pred             EEEEeCc
Q psy9257         502 LTLIPTS  508 (530)
Q Consensus       502 LtVip~~  508 (530)
                      |+|.|..
T Consensus        90 l~v~R~~   96 (103)
T d1wfva_          90 LLLKRGT   96 (103)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998754

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.8e-10  Score=94.92  Aligned_cols=73  Identities=15%  Similarity=0.355  Sum_probs=62.2

Q ss_pred             eEEeccCCCCccceeeccC--------------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         433 TVTLHRDSSGHFGFHFNKG--------------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~G--------------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      +|++.++  ..|||.+.+|              . |..|.++++|+++ |++||+|++|||+++.++++++++.+|++++
T Consensus        14 ~v~~~~~--~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~   90 (103)
T d2h3la1          14 RVRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ   90 (103)
T ss_dssp             EEEEECS--SSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHHCC
T ss_pred             EEEEccC--CCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3444443  4589998744              2 8999999999876 9999999999999999999999999999999


Q ss_pred             CEEEEEEEeCc
Q psy9257         498 SVLTLTLIPTS  508 (530)
Q Consensus       498 ~tVtLtVip~~  508 (530)
                      +.++|+|.|+.
T Consensus        91 ~~v~L~V~R~~  101 (103)
T d2h3la1          91 NTVELIIVREV  101 (103)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CeEEEEEEEEC
Confidence            99999998753

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.1e-10  Score=97.00  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             eeeEEeccCCCCccceeeccC--------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG--------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G--------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      .+.|+|.|+..+.|||.+..+        .|..|.++++|+++| |++||+|++|||++|.+++++++..+|+.++..++
T Consensus        16 p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~   95 (117)
T d1v62a_          16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVR   95 (117)
T ss_dssp             SEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEE
T ss_pred             CEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEE
Confidence            456778787777799999732        288999999999998 99999999999999999999999999999999999


Q ss_pred             EEEEeCc
Q psy9257         502 LTLIPTS  508 (530)
Q Consensus       502 LtVip~~  508 (530)
                      |+|.+..
T Consensus        96 l~v~~~~  102 (117)
T d1v62a_          96 LEILPVP  102 (117)
T ss_dssp             EEECCBT
T ss_pred             EEEEECC
Confidence            9997754

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=3e-10  Score=96.12  Aligned_cols=71  Identities=21%  Similarity=0.357  Sum_probs=63.5

Q ss_pred             CeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         358 GLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       358 G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      ..|||++....   .+++|..|.++++|++++|+.||+|++|||+.+.+++++++.++|+.. +..|.|+|+|..
T Consensus        15 ~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~-~~~v~L~v~R~~   88 (103)
T d1wf7a_          15 APWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRAS   88 (103)
T ss_dssp             SCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCS
T ss_pred             CCccEEEEcccCCCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            45899998743   579999999999999999999999999999999999999999999885 688999998854

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-10  Score=99.50  Aligned_cols=81  Identities=26%  Similarity=0.436  Sum_probs=65.3

Q ss_pred             cceEEEecc-CCCeeEEEEEec-----CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257         347 IRELVLCKD-ASGLIGLRVCAI-----NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN  419 (530)
Q Consensus       347 Vr~V~L~K~-s~G~LG~~V~~~-----~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~  419 (530)
                      .++|.+.|. ....|||.+...     +.|++|..|.+|++|+++| |+.||+|++|||..+.++++  +..+++.+.+.
T Consensus        20 ~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~~--~~~~l~~~~~~   97 (124)
T d1wh1a_          20 LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE--AVALLTSEENK   97 (124)
T ss_dssp             ECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHH--HHHHHTCSSCC
T ss_pred             eEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCHHH--HHHHHhhCCCC
Confidence            345666653 456799999753     4689999999999999999 99999999999999988654  67788776677


Q ss_pred             eEEEEEecCC
Q psy9257         420 NIRVVIRDRP  429 (530)
Q Consensus       420 ~VtLtVrR~~  429 (530)
                      .|.|.|.|+.
T Consensus        98 ~v~l~v~r~~  107 (124)
T d1wh1a_          98 NFSLLIARPE  107 (124)
T ss_dssp             SCCEEEEECS
T ss_pred             cEEEEEEeCC
Confidence            8888887753

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.3e-10  Score=99.02  Aligned_cols=78  Identities=24%  Similarity=0.387  Sum_probs=66.8

Q ss_pred             eeeEEeccCCCCccceeeccC----------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC-C
Q psy9257         431 ERTVTLHRDSSGHFGFHFNKG----------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG-S  498 (530)
Q Consensus       431 e~tVtL~kd~~g~LGfs~~~G----------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG-~  498 (530)
                      .++|+|.|...+ |||.+.+|          .|..|.++++|+++| |+.||+|++|||+.+.++++++++.+|+..+ .
T Consensus        30 ~~~V~l~k~~~g-lG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~  108 (130)
T d1i16a_          30 VCTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG  108 (130)
T ss_dssp             EEEEEEETTSSS-TTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSS
T ss_pred             EEEEEEEeCCCc-cCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCC
Confidence            456777776654 99999754          299999999999999 9999999999999999999999999999764 4


Q ss_pred             EEEEEEEeCcc
Q psy9257         499 VLTLTLIPTSM  509 (530)
Q Consensus       499 tVtLtVip~~~  509 (530)
                      .|+|+|.|+..
T Consensus       109 ~v~l~v~r~~~  119 (130)
T d1i16a_         109 PVTIVIRRKSL  119 (130)
T ss_dssp             EEEEEEEEESS
T ss_pred             eEEEEEEcCCC
Confidence            89999987653

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=4.1e-10  Score=98.15  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=64.8

Q ss_pred             ceeeEEeccCCCCccceeeccC-----------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG  497 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG  497 (530)
                      +.++|+|.++....|||.+.+|           .|..|.++++|+++| |++||+|++|||+++.++++++++++|+.++
T Consensus        15 ~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~   94 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             eeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            5567888888878899999754           288999999999998 9999999999999999999999999999766


Q ss_pred             CEEEEEEE
Q psy9257         498 SVLTLTLI  505 (530)
Q Consensus       498 ~tVtLtVi  505 (530)
                      ..++|++.
T Consensus        95 ~~~~l~l~  102 (122)
T d1v5qa_          95 ITSKVTLE  102 (122)
T ss_dssp             TTTCEEEE
T ss_pred             CceEEEEE
Confidence            55444443

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.1e-09  Score=89.52  Aligned_cols=79  Identities=27%  Similarity=0.369  Sum_probs=65.1

Q ss_pred             cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEEE
Q psy9257         347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVI  425 (530)
Q Consensus       347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLtV  425 (530)
                      +..|.+.|+..+ |||++.....+..+..+.  .++..++|+.||+|++|||+.+.+++++++.++|+..+ +..|+|+|
T Consensus        11 ~~~v~l~k~~~g-lGf~i~g~~~~~~~~~~~--~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v   87 (96)
T d1ujva_          11 LMTLTIVKGAQG-FGFTIADSPTGQRVKQIL--DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII   87 (96)
T ss_dssp             CEEEEEECCSSS-SSEEEEEETTEEEEEEES--CGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEE
T ss_pred             EEEEEEEeCCCc-ccEEEEeeCCCceEeecc--CcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            456778888765 999999877766655443  45666789999999999999999999999999999764 68899999


Q ss_pred             ecC
Q psy9257         426 RDR  428 (530)
Q Consensus       426 rR~  428 (530)
                      +|.
T Consensus        88 ~R~   90 (96)
T d1ujva_          88 HRG   90 (96)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            885

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-09  Score=89.27  Aligned_cols=72  Identities=19%  Similarity=0.352  Sum_probs=60.9

Q ss_pred             eEEeccCCCCccceeeccC---------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCC--CEE
Q psy9257         433 TVTLHRDSSGHFGFHFNKG---------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGG--SVL  500 (530)
Q Consensus       433 tVtL~kd~~g~LGfs~~~G---------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG--~tV  500 (530)
                      +|.|.|.....|||.+..+         .|..|.++|+|+++| |+.||+|++|||+++.+++++++..+|+.++  ..+
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v   80 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV   80 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEE
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEE
Confidence            3567777777899998532         299999999999999 9999999999999999999999999999654  456


Q ss_pred             EEEE
Q psy9257         501 TLTL  504 (530)
Q Consensus       501 tLtV  504 (530)
                      +|+|
T Consensus        81 ~L~V   84 (85)
T d1x45a1          81 KLNI   84 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.8e-10  Score=94.53  Aligned_cols=78  Identities=26%  Similarity=0.389  Sum_probs=63.6

Q ss_pred             ceeeEEeccCC-CCccceeeccC-------cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257         430 LERTVTLHRDS-SGHFGFHFNKG-------QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT  501 (530)
Q Consensus       430 ~e~tVtL~kd~-~g~LGfs~~~G-------vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt  501 (530)
                      +.+.|+|.+.. ...|||.+.+|       .|..|.++++|+++||+.||+|++|||++|.+++++++..+|+..++ +.
T Consensus         8 ~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~-~~   86 (101)
T d1ueza_           8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKK-LV   86 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSS-CC
T ss_pred             CEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCCC-EE
Confidence            44566676654 34599998643       29999999999999999999999999999999999999999987764 66


Q ss_pred             EEEEeCc
Q psy9257         502 LTLIPTS  508 (530)
Q Consensus       502 LtVip~~  508 (530)
                      |+|.+..
T Consensus        87 l~V~~~~   93 (101)
T d1ueza_          87 LSVYSAG   93 (101)
T ss_dssp             EEECCCC
T ss_pred             EEEEECC
Confidence            7776544

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-09  Score=92.74  Aligned_cols=77  Identities=22%  Similarity=0.384  Sum_probs=62.9

Q ss_pred             EEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhC----CCCe
Q psy9257         350 LVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA----PVNN  420 (530)
Q Consensus       350 V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a----~G~~  420 (530)
                      |.+.|. ...|||++.+..    .+++|..|.++++|+++| |+.||+|++|||+.+.+++++++..+|+.+    ....
T Consensus        10 v~~~k~-~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~   88 (103)
T d1ufxa_          10 VRVKKS-AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDY   88 (103)
T ss_dssp             EEEECC-SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSE
T ss_pred             EEEEeC-CCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccce
Confidence            444454 556999998642    358999999999999999 999999999999999999999999999874    2355


Q ss_pred             EEEEEec
Q psy9257         421 IRVVIRD  427 (530)
Q Consensus       421 VtLtVrR  427 (530)
                      ++|.|.+
T Consensus        89 ~~l~v~~   95 (103)
T d1ufxa_          89 IDFLVTE   95 (103)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            6666654

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.3e-09  Score=90.94  Aligned_cols=77  Identities=17%  Similarity=0.371  Sum_probs=63.1

Q ss_pred             CCceeeEEeccCCCCccceeeccC---------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC-
Q psy9257         428 RPLERTVTLHRDSSGHFGFHFNKG---------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG-  496 (530)
Q Consensus       428 ~~~e~tVtL~kd~~g~LGfs~~~G---------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs-  496 (530)
                      ....+++++.++.  .|||.+.+|         .|..|.++|+|+++| |+.||+|++|||+++.+++++++..+|+++ 
T Consensus         6 ~~~~~~v~~~~~~--glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   83 (96)
T d1wi4a1           6 DPAFRVITVTKET--GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   83 (96)
T ss_dssp             CTTEEEEEECCSS--CCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             CCcEEEEEecCCC--ccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            3445566666653  499999643         289999999999999 999999999999999999999999999865 


Q ss_pred             ---CCEEEEEEEe
Q psy9257         497 ---GSVLTLTLIP  506 (530)
Q Consensus       497 ---G~tVtLtVip  506 (530)
                         +..++|.++|
T Consensus        84 ~~~~~~vel~~~R   96 (96)
T d1wi4a1          84 LRSESPWEIAFIR   96 (96)
T ss_dssp             CSSSSCEEEEEEC
T ss_pred             CCCCCeEEEEEEC
Confidence               4668887764

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.4e-09  Score=93.87  Aligned_cols=67  Identities=18%  Similarity=0.276  Sum_probs=60.2

Q ss_pred             CccceeeccC------------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         442 GHFGFHFNKG------------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       442 g~LGfs~~~G------------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      ..|||.+.+|            .|..|.++++|+++| |+.||+|++|||+++.+++++++..+|++++..++|+|.+..
T Consensus        30 ~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~~  109 (117)
T d1ujda_          30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDL  109 (117)
T ss_dssp             CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSC
T ss_pred             cccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEECC
Confidence            3499998632            289999999999999 999999999999999999999999999999889999998764

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=3.5e-10  Score=95.89  Aligned_cols=72  Identities=24%  Similarity=0.295  Sum_probs=63.4

Q ss_pred             CCeeEEEEEec---CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257         357 SGLIGLRVCAI---NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP  429 (530)
Q Consensus       357 ~G~LG~~V~~~---~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~  429 (530)
                      ...|||++...   ..+++|..|.++++|++++|+.||+|++|||+.+.++++.++..+++.. +..|.|+|+|..
T Consensus        14 ~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~-~~~v~l~V~R~~   88 (103)
T d1v5la_          14 PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAE   88 (103)
T ss_dssp             SSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCT
T ss_pred             CCCCCEEEEeecCCCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECC
Confidence            45589998864   3579999999999999999999999999999999999999999999764 678999998854

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.2e-09  Score=93.00  Aligned_cols=73  Identities=23%  Similarity=0.342  Sum_probs=62.5

Q ss_pred             EEeccCCCCccceeeccC----------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCEE
Q psy9257         434 VTLHRDSSGHFGFHFNKG----------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG--GSVL  500 (530)
Q Consensus       434 VtL~kd~~g~LGfs~~~G----------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~tV  500 (530)
                      +++.++..+.|||.+.+|          .|..|.++|+|+++| |+.||+|++|||+++.+++++++..+|+++  +..+
T Consensus        22 ~~~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v  101 (108)
T d2cssa1          22 TTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQV  101 (108)
T ss_dssp             SCCSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCE
T ss_pred             EEEecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEE
Confidence            445666677799999644          288999999999998 999999999999999999999999999854  5678


Q ss_pred             EEEEEe
Q psy9257         501 TLTLIP  506 (530)
Q Consensus       501 tLtVip  506 (530)
                      +|+|.|
T Consensus       102 ~l~v~R  107 (108)
T d2cssa1         102 EIIVSR  107 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            888876

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.5e-10  Score=95.02  Aligned_cols=65  Identities=26%  Similarity=0.404  Sum_probs=55.8

Q ss_pred             cCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeE
Q psy9257         367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV  434 (530)
Q Consensus       367 ~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tV  434 (530)
                      ...|++|..|.++|||+++||+.||+|++|||+.+.++.+  +..+++. .+..+.|+|+|+++++++
T Consensus        23 ~~~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~--~~~~l~~-~~~~v~l~v~R~~~~~~l   87 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAE--LRKVLDS-KPSVLALNIQRGDSTIYL   87 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGTCCSSCEEEEETTEECSSHHH--HHHHTTT-CCSCCCEEEESSSCEEEE
T ss_pred             CCCeEEEEEECCCCHHHHcCCCCCcEEEEECCEEcCCHHH--HHHHHHh-CCCEEEEEEEECCEEEEE
Confidence            3478999999999999999999999999999999988644  7777765 567899999998877654

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.3e-10  Score=93.81  Aligned_cols=76  Identities=24%  Similarity=0.323  Sum_probs=64.0

Q ss_pred             ceeeEEeccCCCCccceeeccC-----------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC-
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG-----------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG-  496 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G-----------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs-  496 (530)
                      +.++|.|.++..+.|||.+.+|           .|..+.++++|+++| |+.||+|++|||+++.+++++++..+|+.+ 
T Consensus         8 e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~   87 (99)
T d1x5ra1           8 ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAA   87 (99)
T ss_dssp             EEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHH
T ss_pred             eeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4456778888877899999754           289999999999999 999999999999999999999999999854 


Q ss_pred             -CCEEEEEEE
Q psy9257         497 -GSVLTLTLI  505 (530)
Q Consensus       497 -G~tVtLtVi  505 (530)
                       ...+.|++.
T Consensus        88 ~~~~l~l~v~   97 (99)
T d1x5ra1          88 LAHKVVLEVE   97 (99)
T ss_dssp             TTTCEEEEEE
T ss_pred             CCCEEEEEEE
Confidence             455666553

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.6e-09  Score=91.61  Aligned_cols=66  Identities=23%  Similarity=0.405  Sum_probs=59.8

Q ss_pred             ccceeeccCc-------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         443 HFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       443 ~LGfs~~~Gv-------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      .|||.+.+|.       |..|.++++|++++|++||+|++|||+++.++++++++++|+++++.+.|+|.|..
T Consensus        16 g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~   88 (103)
T d1wf7a_          16 PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS   88 (103)
T ss_dssp             CCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCS
T ss_pred             CccEEEEcccCCCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4899987542       77888999999999999999999999999999999999999999999999998765

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=1.3e-09  Score=95.46  Aligned_cols=77  Identities=22%  Similarity=0.478  Sum_probs=64.7

Q ss_pred             eeEEeccCCCCccceeeccC----------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC---
Q psy9257         432 RTVTLHRDSSGHFGFHFNKG----------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG---  496 (530)
Q Consensus       432 ~tVtL~kd~~g~LGfs~~~G----------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs---  496 (530)
                      ++|++.+.....|||.+.+|          . |..|.++++|+++| |+.||+|++|||+++.+++++++..+|+++   
T Consensus        27 ~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~  106 (127)
T d1wg6a_          27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM  106 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccc
Confidence            44556665556699998632          2 89999999999998 999999999999999999999999999864   


Q ss_pred             ----CCEEEEEEEeCc
Q psy9257         497 ----GSVLTLTLIPTS  508 (530)
Q Consensus       497 ----G~tVtLtVip~~  508 (530)
                          ...|+|+|.|..
T Consensus       107 ~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         107 EGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHTCEEEEEEEECS
T ss_pred             cCCCCCEEEEEEeeCC
Confidence                568999998864

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.5e-09  Score=87.47  Aligned_cols=78  Identities=24%  Similarity=0.316  Sum_probs=61.7

Q ss_pred             ceeeEEeccCCCCccceeeccCc-EEEEcc-CCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC--CCEEEEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKGQ-IVSLVK-DSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG--GSVLTLTLI  505 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~Gv-V~sVv~-gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs--G~tVtLtVi  505 (530)
                      +.++|+|.|+..+ |||.+.++. ...+.. ..++..++|++||+|++|||++|.++++++++.+|+..  +..++|+|.
T Consensus        10 e~~~v~l~k~~~g-lGf~i~g~~~~~~~~~~~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~   88 (96)
T d1ujva_          10 ELMTLTIVKGAQG-FGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIH   88 (96)
T ss_dssp             CCEEEEEECCSSS-SSEEEEEETTEEEEEEESCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEE
T ss_pred             eEEEEEEEeCCCc-ccEEEEeeCCCceEeeccCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEE
Confidence            4567888887765 999998765 223333 34455567999999999999999999999999999964  789999998


Q ss_pred             eCc
Q psy9257         506 PTS  508 (530)
Q Consensus       506 p~~  508 (530)
                      |..
T Consensus        89 R~~   91 (96)
T d1ujva_          89 RGS   91 (96)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            753

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.87  E-value=1.8e-09  Score=91.14  Aligned_cols=78  Identities=27%  Similarity=0.275  Sum_probs=62.2

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEeccC--CCCccc
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLHRD--SSGHFG  445 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~kd--~~g~LG  445 (530)
                      .|++|..|.+|+||+++ |+.||+|++|||+.+.++.+  +...++. ..|+.|+|+|.|++++.++....+  ..+.+|
T Consensus         3 ~Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~v~~~~~--l~~~i~~~~~G~~v~l~v~R~~~~~~l~~~p~~~~~~~iG   79 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTT--YSAALKTISVGEVINITTDQGTFHLKTGRNPNNSSRAYMG   79 (103)
T ss_dssp             CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSHHH--HHHHHTTCCTTCEEEEEETTEEEEEECCBCSSSCCSCBCC
T ss_pred             CcEEEEEECCCChHHhc-CCCCCEEEEECCEEcCCHHH--HHHHHhhCCCCCEEEEEEEECCEEEEEEeccCCCCceEEE
Confidence            58999999999999875 99999999999999998765  6667655 468999999999877766655433  344577


Q ss_pred             eeec
Q psy9257         446 FHFN  449 (530)
Q Consensus       446 fs~~  449 (530)
                      +.+.
T Consensus        80 i~~~   83 (103)
T d2hgaa1          80 IRTS   83 (103)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7653

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=1.8e-09  Score=94.68  Aligned_cols=78  Identities=26%  Similarity=0.359  Sum_probs=66.8

Q ss_pred             ceeeEEeccCCCCccceeeccC----cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEE
Q psy9257         430 LERTVTLHRDSSGHFGFHFNKG----QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTL  502 (530)
Q Consensus       430 ~e~tVtL~kd~~g~LGfs~~~G----vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtL  502 (530)
                      +.++++|.++..+ |||.+..+    .|..|.++++|+++| |+.||+|++|||++|.++++++++.+|+.  .|..|+|
T Consensus        27 ~~~~v~l~~g~~G-lG~~i~~~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L  105 (126)
T d1wifa_          27 KVIQTKLTVGNLG-LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQI  105 (126)
T ss_dssp             CEEEEEEECCTTC-CCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEE
T ss_pred             cEEEEEEeeCCCc-EEEEEEecCCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEE
Confidence            4566777777766 88888633    288999999999999 99999999999999999999999999985  4689999


Q ss_pred             EEEeCc
Q psy9257         503 TLIPTS  508 (530)
Q Consensus       503 tVip~~  508 (530)
                      +|.|..
T Consensus       106 ~v~R~~  111 (126)
T d1wifa_         106 KAYRGF  111 (126)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence            998864

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=8.2e-09  Score=89.31  Aligned_cols=67  Identities=22%  Similarity=0.423  Sum_probs=58.5

Q ss_pred             CccceeeccC-------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh----CCCEEEEEEEeCc
Q psy9257         442 GHFGFHFNKG-------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK----GGSVLTLTLIPTS  508 (530)
Q Consensus       442 g~LGfs~~~G-------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr----sG~tVtLtVip~~  508 (530)
                      +.|||.+.+|       + |..|.++++|+++| |+.||+|++|||+++.+++++++..+|++    .+..|+|+|.+..
T Consensus        28 ~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~p  107 (118)
T d1v6ba_          28 GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeCC
Confidence            3588888744       2 88999999999999 99999999999999999999999999974    4788999998754

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.76  E-value=5.3e-09  Score=85.73  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=57.6

Q ss_pred             CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEec
Q psy9257         369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLH  437 (530)
Q Consensus       369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~  437 (530)
                      .|+.|..+.++|+|+++||+.||+|++|||..+.++.+  +..++.. ..++.++|+|.|+++++++++.
T Consensus        19 ~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~~~--~~~~~~~~~~~~~~~l~v~R~g~~~~i~v~   86 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNV--MNTLFQSMNEMTEMSLTVERDGQQHDVYIQ   86 (87)
T ss_dssp             EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHH--HHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEecCCCCCHHHHCCCCCCCEEEEECCEEeecHHH--HHHHHHhhccccccEEEEEECCEEEEEEEE
Confidence            46778889999999999999999999999999998765  5666654 5678999999999999888764

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.76  E-value=1.4e-08  Score=83.74  Aligned_cols=57  Identities=16%  Similarity=0.299  Sum_probs=52.7

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~~  509 (530)
                      |.++.++|||+++||++||+|++|||+++.+++.+++..+|+ ..|..++|+|.|...
T Consensus        23 V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3          23 VLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             EEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            889999999999999999999999999999999899999887 678899999998754

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.7e-09  Score=91.61  Aligned_cols=67  Identities=19%  Similarity=0.322  Sum_probs=60.3

Q ss_pred             CccceeeccCc-------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         442 GHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       442 g~LGfs~~~Gv-------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      ..|||.+.+|.       |..|.++++|++++|++||+|++|||++|.+++++++..+|+.+++.++|+|.|..
T Consensus        15 ~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_          15 APWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             SCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             CCCCEEEEeecCCCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            44899987542       77889999999999999999999999999999999999999999999999998865

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=9.3e-09  Score=86.80  Aligned_cols=72  Identities=26%  Similarity=0.466  Sum_probs=58.5

Q ss_pred             EEeccCCCCccceeeccC--------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhC-----CCE
Q psy9257         434 VTLHRDSSGHFGFHFNKG--------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKG-----GSV  499 (530)
Q Consensus       434 VtL~kd~~g~LGfs~~~G--------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrs-----G~t  499 (530)
                      |++.|. ...|||.+.+|        .|..|.++++|+++| |++||+|++|||+++.++++++++.+|+++     ...
T Consensus        10 v~~~k~-~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~   88 (103)
T d1ufxa_          10 VRVKKS-AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDY   88 (103)
T ss_dssp             EEEECC-SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSE
T ss_pred             EEEEeC-CCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccce
Confidence            344444 34599999744        299999999999999 999999999999999999999999999864     356


Q ss_pred             EEEEEEe
Q psy9257         500 LTLTLIP  506 (530)
Q Consensus       500 VtLtVip  506 (530)
                      ++|.+.+
T Consensus        89 ~~l~v~~   95 (103)
T d1ufxa_          89 IDFLVTE   95 (103)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            7776643

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.45  E-value=8.3e-08  Score=78.01  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeC
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPT  507 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~  507 (530)
                      |.+|.++|+|+++||+.||+|++|||+++.++  .++...+.  +.|+.++|+|.|.
T Consensus        20 V~~V~~~spA~~aGl~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1          20 IVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             EEEECTTSTTGGGTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEET
T ss_pred             EEEECCCCHHHHcCCCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEEEEEC
Confidence            89999999999999999999999999999877  45666664  4578999999885

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.3e-07  Score=81.84  Aligned_cols=75  Identities=21%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             eeEEeccC-CCCccceeeccC--------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCE
Q psy9257         432 RTVTLHRD-SSGHFGFHFNKG--------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK-GGSV  499 (530)
Q Consensus       432 ~tVtL~kd-~~g~LGfs~~~G--------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~t  499 (530)
                      ++|+|.+. ..+.|||.+..+        + |..|.++++|+++| |+.||+|++|||+++.++  .++..+++. .+..
T Consensus        21 ~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~--~~~~~~l~~~~~~~   98 (124)
T d1wh1a_          21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKN   98 (124)
T ss_dssp             CCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCS
T ss_pred             EEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCH--HHHHHHHhhCCCCc
Confidence            45667664 345699999632        2 99999999999998 999999999999999876  455666654 4667


Q ss_pred             EEEEEEeCc
Q psy9257         500 LTLTLIPTS  508 (530)
Q Consensus       500 VtLtVip~~  508 (530)
                      +.|+|.+..
T Consensus        99 v~l~v~r~~  107 (124)
T d1wh1a_          99 FSLLIARPE  107 (124)
T ss_dssp             CCEEEEECS
T ss_pred             EEEEEEeCC
Confidence            888887653

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.1e-07  Score=77.56  Aligned_cols=54  Identities=24%  Similarity=0.307  Sum_probs=49.8

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS  508 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~  508 (530)
                      |.+|.++|+|+++||+.||+|++|||+++.++  +++..++++.++.+.|+|.|..
T Consensus        29 V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~~   82 (88)
T d1ky9b2          29 VNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGD   82 (88)
T ss_dssp             BCCCCSSCTTGGGTCCSSCEEEEETTEECSSH--HHHHHHTTTCCSCCCEEEESSS
T ss_pred             EEEECCCCHHHHcCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCEEEEEEEECC
Confidence            88999999999999999999999999999877  6788889888889999998875

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.25  E-value=9.1e-07  Score=72.95  Aligned_cols=64  Identities=14%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             ccceeec--cC--cEEEEccC--------CHHHHcCC-CCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257         443 HFGFHFN--KG--QIVSLVKD--------SSAARNGL-LVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTS  508 (530)
Q Consensus       443 ~LGfs~~--~G--vV~sVv~g--------SpAarAGL-r~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~  508 (530)
                      .||..|+  ++  +|..|.++        |||+++|| ++||+|++|||++|.++.  ++..+|+ +.|..|+|+|.|..
T Consensus         2 ~lG~d~~~~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~i~R~g   79 (91)
T d1k32a1           2 RIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKG   79 (91)
T ss_dssp             BCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             cccEEEEEECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEEEEeCC
Confidence            3565554  22  28888877        99999999 799999999999999885  5666666 78999999999864

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=8.3e-07  Score=73.11  Aligned_cols=55  Identities=24%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY  510 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~  510 (530)
                      |.+|.++++|+++||+.||+|++|||++|.++  +++...++ .|+.+.++|.|....
T Consensus        35 V~~V~~~spA~~aGl~~GDiI~~ing~~V~s~--~dl~~~l~-~g~~v~l~v~R~g~~   89 (100)
T d1lcya1          35 IHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVR-TQSQLAVQIRRGRET   89 (100)
T ss_dssp             EEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHT-TCSSEEEEEEETTEE
T ss_pred             EEEECCCchHhhcCCCCCcEEEEECCEEcCCH--HHHHHHhc-CCCEEEEEEEECCEE
Confidence            88999999999999999999999999999987  46777774 678899999998744

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1.8e-07  Score=77.69  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=46.6

Q ss_pred             ccceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchhh
Q psy9257         443 HFGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQH  512 (530)
Q Consensus       443 ~LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e~  512 (530)
                      .+|+....|. |.+|.++++|+++||+.||+|++|||++|.++  .++...+.  +.|+.+.|+|.|+.....
T Consensus        19 ~~gl~~~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~   89 (99)
T d1sota1          19 GGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQLT   89 (99)
T ss_dssp             --------CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEECC-----CCC
T ss_pred             HcCCCCCCccEEEEecCCCCHHHcCCCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEEEEEECCEEEE
Confidence            3555544555 77899999999999999999999999999988  45766665  567999999998864433

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=3.6e-07  Score=75.07  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=52.5

Q ss_pred             cceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcc
Q psy9257         444 FGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSM  509 (530)
Q Consensus       444 LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~  509 (530)
                      +|+.-..|. |..|.++++|+++||+.||+|++|||++|.++  +++..++.  +.|+.+.|+|.|...
T Consensus        21 ~gl~~~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          21 MKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             SCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             cCCCCCCCcEEEECCCChhHHHhCCCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            444333454 77899999999999999999999999999998  46777776  468899999998764

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.93  E-value=4.3e-06  Score=67.95  Aligned_cols=57  Identities=11%  Similarity=0.067  Sum_probs=49.2

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchh
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQ  511 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e  511 (530)
                      |..+..+++|+++||+.||+|++|||++|.++  +++..++.  +.++.++++|.|.....
T Consensus        23 v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~--~~~~~~~~~~~~~~~~~l~v~R~g~~~   81 (87)
T d2i6va1          23 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQH   81 (87)
T ss_dssp             EEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTEEE
T ss_pred             EecCCCCCHHHHCCCCCCCEEEEECCEEeecH--HHHHHHHHhhccccccEEEEEECCEEE
Confidence            67888999999999999999999999999988  46777776  57899999999986543

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.91  E-value=5.7e-06  Score=69.14  Aligned_cols=54  Identities=26%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcc
Q psy9257         453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSM  509 (530)
Q Consensus       453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~  509 (530)
                      |..|.++++|++ +|+.||+|++|||+.|.++  .++...|.  +.|+.++|+|.|...
T Consensus         7 V~~V~~~sPA~~-~L~~GD~I~~ing~~v~~~--~~l~~~i~~~~~G~~v~l~v~R~~~   62 (103)
T d2hgaa1           7 IDSVVPGSPASK-VLTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITTDQGTF   62 (103)
T ss_dssp             EEEECSSSGGGG-TSCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEETTEEE
T ss_pred             EEEECCCChHHh-cCCCCCEEEEECCEEcCCH--HHHHHHHhhCCCCCEEEEEEEECCE
Confidence            889999999987 4999999999999999987  57888886  358999999987653

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.0044  Score=58.17  Aligned_cols=55  Identities=18%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceE
Q psy9257         292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIREL  350 (530)
Q Consensus       292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V  350 (530)
                      ++.||    +|+++++|++++++++..|+..|++.++...+++..||+||++.+.++++
T Consensus       186 ~~~iq----tda~i~~GnSGGPl~n~~G~vIGI~t~~~~~~~~~~gi~faIP~~~~~~~  240 (249)
T d1ky9a2         186 ENFIQ----TDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL  240 (249)
T ss_dssp             CCCEE----ESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEEEEEHHHHHHH
T ss_pred             cceEE----EeeeecCCCCCceEECCCCEEEEEEEEEeccCCCcccEEEEEEHHHHHHH
Confidence            34566    99999999999999999999999977777667888999999987776654