Psyllid ID: psy9259

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MEDDAIIQNIKVDSAITNPNTPIEKPTDGIMSIFMSASRSSTGMKRKSTSTIDDERQNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNTPIEKPTDGIMAK
ccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccEEEEcccHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccc
ccccEEEEEEEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHHcHHHHHHHHHHHccccccEEEEEcccccccHHHHccccccHHHHHHcccccccccccccccHHHcccHHHcccccHHHHHHHHHHHHHccccHHHHHHHHEEEccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccEEEEEccHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEcc
MEDDAIIQNikvdsaitnpntpiekptdGIMSIFMSasrsstgmkrkststidderqnsendiAEGVLNIEKQLIHEltnsnityefpveyvynpLDYAFELHSKYVYKYCNSKKKILFlgmnpgpwgmvqcgipfgevkAVKGflniegkvnqpekfhkdrpikgldcprseisgKRLWELASQLSDGKAADffkhayvhnyfplafvsktatnitpaelknkTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTsishpsprnpasnknwVENTTKKLKDLGVLhyftsesqnipnhehcnhrtlgftvdersktrgmnevnatknATRHAEMVCIDHivrqypstyRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFAcsndrfgynvlgsdektnYIEIVEntddntpkddaVIQNIKvnsaitnpntpiekptdgimak
MEDDAIIQnikvdsaitnpntpiekptdgIMSIFMSasrsstgmkrkststidderqnsendIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEgkvnqpekfhkdrpikgldcprseiSGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEkalksnriftvkvtsishpsprnpasnknwVENTTKKLKDLGVLHYFTSesqnipnhehcnhRTLGftvdersktrgmnevnatknatrhaemVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVentddntpkdDAVIQNikvnsaitnpntpiekptdgimak
MEDDAIIQNIKVDSAITNPNTPIEKPTDGIMSIFMSASRSSTGMKRKSTSTIDDERQNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNTPIEKPTDGIMAK
***************************************************************AEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVN************GLDCP**EISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVT***************WVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV******************TRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVEN***********I**I***********************
***DAII*NIKVD*A***************************************************VLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQ****HKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHP*PR******NWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSA******************
MEDDAIIQNIKVDSAITNPNTPIEKPTDGIMSIFMSA*******************QNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNTPIEKPTDGIMAK
**DDAIIQNIKVDSAITNPNTPIEKPTDGIMSIFM************************ENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNTPIEK**D*****
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MEDDAIIQNIKVDSAITNPNTPIEKPTDGIMSIFMSASRSSTGMKRKSTSTIDDERQNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNTPIEKPTDGIMAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
Q9YGN6281 Single-strand selective m N/A N/A 0.484 0.843 0.481 5e-60
Q811Q1278 Single-strand selective m yes N/A 0.464 0.816 0.461 4e-57
Q53HV7270 Single-strand selective m yes N/A 0.476 0.862 0.453 1e-56
Q6P5C5279 Single-strand selective m yes N/A 0.464 0.813 0.456 2e-56
Q59I47272 Single-strand selective m yes N/A 0.476 0.856 0.449 5e-51
Q0P4H0170 tRNA-specific adenosine d no N/A 0.167 0.482 0.401 1e-12
Q4V7V8175 tRNA-specific adenosine d N/A N/A 0.169 0.474 0.416 1e-12
O94642389 tRNA-specific adenosine d yes N/A 0.143 0.179 0.364 2e-12
Q6P6J0191 tRNA-specific adenosine d no N/A 0.143 0.366 0.421 2e-12
Q7Z6V5191 tRNA-specific adenosine d no N/A 0.155 0.397 0.416 5e-12
>sp|Q9YGN6|SMUG1_XENLA Single-strand selective monofunctional uracil DNA glycosylase OS=Xenopus laevis GN=smug1 PE=1 SV=1 Back     alignment and function desciption
 Score =  232 bits (591), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 159/243 (65%), Gaps = 6/243 (2%)

Query: 50  STIDDERQNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYK 109
           S I D   ++E+  A+  L +E +L   L  SN+ ++ PV+YVYNPL YA+  H  YV  
Sbjct: 26  SDIPDITSSTESP-ADSFLKVELEL--NLKLSNLVFQDPVQYVYNPLVYAWAPHENYVQT 82

Query: 110 YCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDC 169
           YC SKK++LFLGMNPGP+GM Q G+PFGEV  V+ +L IEG V++PE  H  R I+G +C
Sbjct: 83  YCKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFEC 142

Query: 170 PRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEK 229
           P+SE+SG R W L   L  G+   FFKH +VHN+ PL F++ +  N+TP +L  K   + 
Sbjct: 143 PQSEVSGARFWSLFKSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTDLP-KAQRDT 200

Query: 230 LNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASN 289
           L  ICD++L   V+ LG++ VI +G+F+E RA KAL +  I  V V  I HPSPRNP +N
Sbjct: 201 LLEICDEALCQAVRVLGVKLVIGVGRFSEQRARKALMAEGI-DVTVKGIMHPSPRNPQAN 259

Query: 290 KNW 292
           K W
Sbjct: 260 KGW 262
Responsible for recognizing base lesions in the genome and initiating base excision DNA repair. Acts as a monofunctional DNA glycosylase specific for uracil (U) residues in DNA and has a preference for single-stranded DNA substrates. No enzymatic activity towards G/T mismatches.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q811Q1|SMUG1_RAT Single-strand selective monofunctional uracil-DNA glycosylase OS=Rattus norvegicus GN=Smug1 PE=2 SV=1 Back     alignment and function description
>sp|Q53HV7|SMUG1_HUMAN Single-strand selective monofunctional uracil DNA glycosylase OS=Homo sapiens GN=SMUG1 PE=1 SV=2 Back     alignment and function description
>sp|Q6P5C5|SMUG1_MOUSE Single-strand selective monofunctional uracil DNA glycosylase OS=Mus musculus GN=Smug1 PE=2 SV=1 Back     alignment and function description
>sp|Q59I47|SMUG1_BOVIN Single-strand selective monofunctional uracil DNA glycosylase OS=Bos taurus GN=SMUG1 PE=2 SV=1 Back     alignment and function description
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2 Back     alignment and function description
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
383859425291 PREDICTED: single-strand selective monof 0.507 0.852 0.549 7e-73
328784320293 PREDICTED: single-strand selective monof 0.507 0.846 0.501 6e-67
380024853289 PREDICTED: single-strand selective monof 0.503 0.851 0.509 6e-67
350422280289 PREDICTED: single-strand selective monof 0.554 0.937 0.457 3e-66
340714604298 PREDICTED: single-strand selective monof 0.556 0.912 0.445 1e-65
193664648262 PREDICTED: single-strand selective monof 0.529 0.988 0.471 2e-65
307170829326 Single-strand selective monofunctional u 0.496 0.745 0.473 4e-64
327263945484 PREDICTED: hypothetical protein LOC10055 0.503 0.508 0.462 4e-61
332028252325 Single-strand selective monofunctional u 0.501 0.753 0.478 4e-61
148237675274 single-strand-selective monofunctional u 0.496 0.886 0.471 8e-61
>gi|383859425|ref|XP_003705195.1| PREDICTED: single-strand selective monofunctional uracil DNA glycosylase-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 139/253 (54%), Positives = 174/253 (68%), Gaps = 5/253 (1%)

Query: 59  SENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKIL 118
           +  DIAE +L++EK+L  +L    +T+  PVEYVY+PL YAF +H+ YV KYCN+ KKIL
Sbjct: 44  AHEDIAEQLLSVEKKLADDL--GKLTFRLPVEYVYSPLQYAFNIHTLYVQKYCNTTKKIL 101

Query: 119 FLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKR 178
           FLGMNPGPWGM Q G+PFGE+  VK +LNI G V +P K    R + G DC RSE+SGKR
Sbjct: 102 FLGMNPGPWGMSQTGVPFGEINMVKNWLNISGPVGKPAKEQSSRQVTGFDCKRSEVSGKR 161

Query: 179 LWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSL 238
           LW L  +LS G    FFKHAYVHNY P+A + K   NITPAELK     E L++ CDK+L
Sbjct: 162 LWGLFKELS-GNPEKFFKHAYVHNYCPIALMDKKGCNITPAELKAGKEQEILHTACDKTL 220

Query: 239 SDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTK 298
           +D +K L  E VI IG +AE RA   +KS+++   KV  + HPSPR  A+NKNW E  TK
Sbjct: 221 ADTIKILKAEIVIGIGGYAEKRALLVVKSHKL-KAKVLCLPHPSPR-AANNKNWDEKATK 278

Query: 299 KLKDLGVLHYFTS 311
           KL + G+L YFTS
Sbjct: 279 KLSEFGLLEYFTS 291

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328784320|ref|XP_396883.3| PREDICTED: single-strand selective monofunctional uracil DNA glycosylase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380024853|ref|XP_003696204.1| PREDICTED: single-strand selective monofunctional uracil DNA glycosylase-like [Apis florea] Back     alignment and taxonomy information
>gi|350422280|ref|XP_003493114.1| PREDICTED: single-strand selective monofunctional uracil DNA glycosylase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340714604|ref|XP_003395816.1| PREDICTED: single-strand selective monofunctional uracil DNA glycosylase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|193664648|ref|XP_001945680.1| PREDICTED: single-strand selective monofunctional uracil DNA glycosylase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307170829|gb|EFN62940.1| Single-strand selective monofunctional uracil DNA glycosylase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|327263945|ref|XP_003216777.1| PREDICTED: hypothetical protein LOC100551589 [Anolis carolinensis] Back     alignment and taxonomy information
>gi|332028252|gb|EGI68299.1| Single-strand selective monofunctional uracil DNA glycosylase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|148237675|ref|NP_001090786.1| single-strand-selective monofunctional uracil-DNA glycosylase 1 [Xenopus (Silurana) tropicalis] gi|134024408|gb|AAI35170.1| LOC100037877 protein [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
RGD|631403278 Smug1 "single-strand-selective 0.511 0.899 0.447 2.1e-54
MGI|MGI:1918976279 Smug1 "single-strand selective 0.511 0.896 0.443 8.9e-54
UNIPROTKB|Q59I47272 SMUG1 "Single-strand selective 0.515 0.926 0.439 4.9e-53
UNIPROTKB|Q53HV7270 SMUG1 "Single-strand selective 0.505 0.914 0.444 4.9e-53
UNIPROTKB|I3LJI9272 SMUG1 "Uncharacterized protein 0.513 0.922 0.433 4.9e-53
UNIPROTKB|F1Q241281 SMUG1 "Uncharacterized protein 0.513 0.893 0.433 1.3e-52
FB|FBgn0038490280 CG5285 [Drosophila melanogaste 0.443 0.775 0.382 2.6e-40
UNIPROTKB|H9L0K0184 SMUG1 "Uncharacterized protein 0.370 0.983 0.389 2.8e-34
UNIPROTKB|D6RA78172 SMUG1 "Single-strand selective 0.312 0.889 0.461 1.2e-33
UNIPROTKB|D6RA25108 SMUG1 "Single-strand selective 0.184 0.833 0.478 7.5e-18
RGD|631403 Smug1 "single-strand-selective monofunctional uracil-DNA glycosylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 114/255 (44%), Positives = 159/255 (62%)

Query:    63 IAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGM 122
             +AEG L  E +L  EL  S + +  PV  +YNP+DYA+E H  YV +YC   K++LFLGM
Sbjct:    27 LAEGFLEEELRLNAEL--SQLQFPEPVGVIYNPVDYAWEPHRNYVTRYCQGPKEVLFLGM 84

Query:   123 NPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWEL 182
             NPGP+GM Q G+PFGEV  V+ +L I G V  P + H  RP+ GL+CP+SE+SG R W  
Sbjct:    85 NPGPFGMAQTGVPFGEVNVVRDWLGIGGSVLSPPQEHPKRPVLGLECPQSEVSGARFWGF 144

Query:   183 ASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIV 242
                L  G+   FF+H +VHN  PL F++ +  N+TPA+L  K   E+L SICD +L   V
Sbjct:   145 FRTLC-GQPQVFFRHCFVHNLCPLLFLAPSGRNLTPADLPAKHR-EQLLSICDAALCRQV 202

Query:   243 KHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKD 302
             + LG+  V+ +G+ AE RA +AL +     V+V  + HPSPR+P +NK W     ++L++
Sbjct:   203 QLLGVRLVVGVGRLAEQRARRAL-AGLTPEVQVEGLLHPSPRSPQANKGWETAARERLQE 261

Query:   303 LGVLHYFTSESQNIP 317
             LG+L   T E    P
Sbjct:   262 LGLLPLLTDEGSVRP 276
GO:0000703 "oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity" evidence=IDA
GO:0003677 "DNA binding" evidence=IEA
GO:0004844 "uracil DNA N-glycosylase activity" evidence=ISO;IDA
GO:0005730 "nucleolus" evidence=ISO;ISS
GO:0006281 "DNA repair" evidence=IDA
GO:0006284 "base-excision repair" evidence=ISO;IDA
GO:0017065 "single-strand selective uracil DNA N-glycosylase activity" evidence=ISO;IDA
GO:0019104 "DNA N-glycosylase activity" evidence=ISO
MGI|MGI:1918976 Smug1 "single-strand selective monofunctional uracil DNA glycosylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q59I47 SMUG1 "Single-strand selective monofunctional uracil DNA glycosylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q53HV7 SMUG1 "Single-strand selective monofunctional uracil DNA glycosylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LJI9 SMUG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q241 SMUG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0038490 CG5285 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H9L0K0 SMUG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|D6RA78 SMUG1 "Single-strand selective monofunctional uracil DNA glycosylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D6RA25 SMUG1 "Single-strand selective monofunctional uracil DNA glycosylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.27LOW CONFIDENCE prediction!
3rd Layer3.5.4LOW CONFIDENCE prediction!
3rd Layer3.2.2.28LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
cd10029233 cd10029, UDG_F3_SMUG, SMUG: single-strand-selectiv 1e-100
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 2e-16
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 7e-13
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 4e-08
pfam03167143 pfam03167, UDG, Uracil DNA glycosylase superfamily 5e-08
smart00987135 smart00987, UreE_C, UreE urease accessory protein, 6e-05
cd09593125 cd09593, UDG_like, Uracil-DNA glycosylases (UDG) a 1e-04
>gnl|CDD|198427 cd10029, UDG_F3_SMUG, SMUG: single-strand-selective monofunctional uracil-DNA glycosylase Back     alignment and domain information 
 Score =  301 bits (773), Expect = e-100
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 6/239 (2%)

Query: 65  EGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNP 124
           + +L+IE +L  +L   N+++  PV +VYNPL+YA+E H  Y+ +Y    KK+LF+GMNP
Sbjct: 1   QKLLSIELELNEKL--DNLSFSAPVAHVYNPLEYAWEPHEAYLRRYGKGPKKVLFVGMNP 58

Query: 125 GPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELAS 184
           GPWGM Q G+PFGEV AV+ +L IEG V +PE  H  RP++G DCPRSE+SG+RLW L  
Sbjct: 59  GPWGMAQTGVPFGEVAAVRDWLGIEGPVGKPEVEHPKRPVEGFDCPRSEVSGRRLWGLFR 118

Query: 185 QLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKH 244
           +   G   +FF+H +VHNY PLAF+ ++  NITP +L  K     L   CD++L   V+ 
Sbjct: 119 ERF-GTPENFFRHCFVHNYCPLAFMEESGRNITPDKLP-KAERGPLFEACDEALRRTVEL 176

Query: 245 LGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDL 303
           L  E V+ +G FAE RA+ AL       V V  I HPSP +PA+N+ W E  T++L++L
Sbjct: 177 LQPEWVVGVGAFAEQRAKAALS--AKLDVTVGRILHPSPASPAANRGWAEKATRQLEEL 233

SMUG (single-strand-selective monofunctional uracil-DNA glycosylase) is classified as Family 3 of Uracil-DNA glycosylase (UDG) enzymes. SMUG is a DNA repair enzyme that catalyzes the removal of mismatched uracil and its derivatives from DNA to initiate DNA base excision repair pathway. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or deamination of cytosine. Uracil mispaired with guanine in DNA is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, DNA repair enzymes are essential for maintaining the integrity of genetic information. A Family 3 UDG from human was first characterized to remove Uracil from ssDNA, hence the name hSMUG (single-strand-selective monofunctional uracil-DNA glycosylase). However, subsequent research has shown that hSMUG1 and its rat ortholog can remove Uracil and its oxidized pyrimidine derivatives from both, ssDNA and dsDNA. The SMUG targeted mismatched uracil derivatives include 5-hydroxyuracil (hoU), 5-hydroxymethyluracil (hmU) and 5-formyluracil (fU). SMUGs are found in Eubacteria and Eukarya. Length = 233
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|217399 pfam03167, UDG, Uracil DNA glycosylase superfamily Back     alignment and domain information
>gnl|CDD|214957 smart00987, UreE_C, UreE urease accessory protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|198424 cd09593, UDG_like, Uracil-DNA glycosylases (UDG) and related enzymes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 99.97
PRK10860172 tRNA-specific adenosine deaminase; Provisional 99.97
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 99.9
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 99.9
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 99.9
cd01285109 nucleoside_deaminase Nucleoside deaminases include 99.88
PHA02588168 cd deoxycytidylate deaminase; Provisional 99.87
KOG1018|consensus169 99.87
TIGR02571151 ComEB ComE operon protein 2. This protein is found 99.86
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 99.86
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.84
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.82
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.8
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.79
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.68
COG1573202 Uracil-DNA glycosylase [DNA replication, recombina 99.46
KOG2771|consensus344 99.38
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.38
PF03167152 UDG: Uracil DNA glycosylase superfamily; InterPro: 99.34
KOG3127|consensus230 99.06
TIGR00758173 UDG_fam4 uracil-DNA glycosylase, family 4. This we 99.02
PF14439136 Bd3614-deam: Bd3614-like deaminase 98.5
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 98.46
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 98.15
PRK10201168 G/U mismatch-specific DNA glycosylase; Provisional 97.31
TIGR00584328 mug mismatch-specific thymine-DNA glycosylate (mug 96.75
PRK12411132 cytidine deaminase; Provisional 95.51
PRK06848139 hypothetical protein; Validated 95.26
PRK05578131 cytidine deaminase; Validated 95.03
PF14437146 MafB19-deam: MafB19-like deaminase 95.01
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 94.4
TIGR01355 283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 94.31
PRK08298136 cytidine deaminase; Validated 93.76
PLN02402 303 cytidine deaminase 93.22
TIGR00628212 ung uracil-DNA glycosylase. This family is based o 92.24
PLN02182 339 cytidine deaminase 91.58
PRK09027295 cytidine deaminase; Provisional 91.31
PF07799136 DUF1643: Protein of unknown function (DUF1643); In 91.3
KOG0833|consensus173 90.14
PRK05254224 uracil-DNA glycosylase; Provisional 88.72
PF14424133 Toxin-deaminase: The BURPS668_1122 family of deami 82.22
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 81.61
PHA03200255 uracil DNA glycosylase; Provisional 80.08
PRK09027295 cytidine deaminase; Provisional 80.03
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=99.97  E-value=1.9e-30  Score=239.71  Aligned_cols=115  Identities=23%  Similarity=0.414  Sum_probs=103.0

Q ss_pred             eEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259         326 TLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI  402 (489)
Q Consensus       326 ~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY  402 (489)
                      |||||+   +|+||+.|+|++.+.+||++|||+.||++|++.++. |+                         +++||||
T Consensus        29 PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~-~~-------------------------l~~~tly   82 (152)
T COG0590          29 PVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGN-YR-------------------------LKDCTLY   82 (152)
T ss_pred             CEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCC-CC-------------------------cCCcEEE
Confidence            358764   789999999999999999999999999999998764 54                         8899999


Q ss_pred             EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhh
Q psy9259         403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSA  471 (489)
Q Consensus       403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~  471 (489)
                      ||+|||+||++||+||||+|||||++++++|+     +++.....+|.++|..|+     +++||..+++.||.
T Consensus        83 vT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~-----~~~e~~~~l~~f~~  151 (152)
T COG0590          83 VTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGI-----LEEECSALLSEFFR  151 (152)
T ss_pred             EecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecch-----hhHHHHHHHHHHHh
Confidence            99999999999999999999999999999984     345555667899999988     79999999999996

>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>KOG1018|consensus Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1573 Uracil-DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2771|consensus Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3 Back     alignment and domain information
>KOG3127|consensus Back     alignment and domain information
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4 Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PRK10201 G/U mismatch-specific DNA glycosylase; Provisional Back     alignment and domain information
>TIGR00584 mug mismatch-specific thymine-DNA glycosylate (mug) Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>TIGR00628 ung uracil-DNA glycosylase Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41 Back     alignment and domain information
>KOG0833|consensus Back     alignment and domain information
>PRK05254 uracil-DNA glycosylase; Provisional Back     alignment and domain information
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PHA03200 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
1oe4_A247 Xenopus Smug1, An Anti-mutator Uracil-dna Glycosyla 8e-61
3dh1_A189 Crystal Structure Of Human Trna-Specific Adenosine- 3e-13
>pdb|1OE4|A Chain A, Xenopus Smug1, An Anti-mutator Uracil-dna Glycosylase Length = 247 Back     alignment and structure 
Iteration: 1

 Score =  231 bits (588), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 152/229 (66%), Gaps = 5/229 (2%)
Query: 64  AEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMN 123
           A+  L +E +L   L  SN+ ++ PV+YVYNPL YA+  H  YV  YC SKK++LFLGMN
Sbjct: 5   ADSFLKVELEL--NLKLSNLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLGMN 62
Query: 124 PGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELA 183
           PGP+GM Q G+PFGEV  V+ +L IEG V++PE  H  R I+G +CP+SE+SG R W L 
Sbjct: 63  PGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLF 122
Query: 184 SQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVK 243
             L  G+   FFKH +VHN+ PL F++ +  N+TP +L  K   + L  ICD++L   V+
Sbjct: 123 KSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTDLP-KAQRDTLLEICDEALCQAVR 180
Query: 244 HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW 292
            LG++ VI +G+F+E RA KAL +  I  V V  I HPSPRNP +NK W
Sbjct: 181 VLGVKLVIGVGRFSEQRARKALMAEGI-DVTVKGIMHPSPRNPQANKGW 228
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34 Deaminase Subunit Adat2 Length = 189 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
1oe4_A247 SMUG1, single-strand selective monofunctional urac 3e-90
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 9e-18
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 4e-09
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 5e-08
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 3e-07
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 4e-07
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 1e-06
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 1e-06
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 2e-06
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 2e-06
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A* Length = 247 Back     alignment and structure
 Score =  274 bits (702), Expect = 3e-90
 Identities = 118/249 (47%), Positives = 159/249 (63%), Gaps = 5/249 (2%)

Query: 62  DIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLG 121
             A+  L +E +L  +L  SN+ ++ PV+YVYNPL YA+  H  YV  YC SKK++LFLG
Sbjct: 3   SPADSFLKVELELNLKL--SNLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLG 60

Query: 122 MNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWE 181
           MNPGP+GM Q G+PFGEV  V+ +L IEG V++PE  H  R I+G +CP+SE+SG R W 
Sbjct: 61  MNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWS 120

Query: 182 LASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDI 241
           L   L       FFKH +VHN+ PL F++ +  N+TP +L  K   + L  ICD++L   
Sbjct: 121 LFKSLCGQ-PETFFKHCFVHNHCPLIFMNHSGKNLTPTDLP-KAQRDTLLEICDEALCQA 178

Query: 242 VKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLK 301
           V+ LG++ VI +G+F+E RA KAL +  I  V V  I HPSPRNP +NK W      +L 
Sbjct: 179 VRVLGVKLVIGVGRFSEQRARKALMAEGID-VTVKGIMHPSPRNPQANKGWEGIVRGQLL 237

Query: 302 DLGVLHYFT 310
           +LGVL   T
Sbjct: 238 ELGVLSLLT 246
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
1oe4_A247 SMUG1, single-strand selective monofunctional urac 100.0
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 99.98
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 99.96
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 99.96
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 99.96
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 99.95
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 99.95
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 99.95
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 99.95
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.92
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 99.91
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 99.9
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 99.89
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 99.87
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.86
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.86
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.77
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.74
3ikb_A198 Uncharacterized conserved protein; APC63946, strep 99.71
2d3y_A219 Uracil-DNA glycosylase; base excision repair, iron 99.61
1ui0_A205 Uracil-DNA glycosylase; base excision repair, iron 99.5
1vk2_A204 Uracil-DNA glycosylase TM0511; structural genomics 99.47
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 98.99
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 98.83
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 98.54
1wyw_A230 TDG, G/T mismatch-specific thymine DNA glycosylase 98.46
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 98.01
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 97.86
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 97.85
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 97.82
1mug_A168 Protein (G:T/U specific DNA glycosylase); hydrolas 97.57
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 97.33
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 97.26
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 96.85
2c2q_A199 G/U mismatch-specific DNA glycosylase; radiation r 96.12
2l3f_A166 Uncharacterized protein; structural genomics, nort 95.5
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 94.91
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 92.93
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 92.72
3a7n_A238 UDG, uracil-DNA glycosylase; UNG-UGI interactions, 91.05
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 90.31
3tr7_A232 UDG, uracil-DNA glycosylase; DNA metabolism, hydro 84.48
3fci_A223 UDG, uracil-DNA glycosylase; DNA repair, alternati 84.43
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 83.59
2owr_A218 UDG, uracil-DNA glycosylase; uracil-DNA glycosylas 83.52
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A* Back     alignment and structure
Probab=100.00  E-value=5e-80  Score=605.09  Aligned_cols=245  Identities=48%  Similarity=0.898  Sum_probs=239.1

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCcccCCCceEEecchhhHHHHHHHHHHHHhcCCCcEEEEeecCCCccccccCcccCChh
Q psy9259          61 NDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVK  140 (489)
Q Consensus        61 ~~~~~~~~~~~~~l~~~l~~~~l~f~~p~~~vyNP~~ya~~~h~~y~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~  140 (489)
                      .++|++||+++++|+++|+  +|+|++||.+|||||+|||++|++||+|||++++||||||||||||||+||||||||+.
T Consensus         2 ~~~a~~~~~~~~~L~~~l~--~l~~p~~v~~vyNP~~ya~~~h~~yl~ky~~~~~riliiG~aPG~~G~~~TGvPF~D~~   79 (247)
T 1oe4_A            2 ESPADSFLKVELELNLKLS--NLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLGMNPGPFGMAQTGVPFGEVN   79 (247)
T ss_dssp             CCCHHHHHHHHHHHHHHHH--TCCCCTTCCEEECHHHHTHHHHHHHHHHHCSSCCSEEEEESSCCTTTHHHHSSTTCCHH
T ss_pred             ccHHHHHHHHHHHHHHHhh--hcCCCCCcCeeECcHHHHHHHHHHHHHHHhCCCCCEEEEecCCCcccCcccCCCCCCHH
Confidence            5789999999999999999  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCCchhhhhhhchhhccccccccccCCCCCCCCC
Q psy9259         141 AVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAE  220 (489)
Q Consensus       141 ~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~  220 (489)
                      +||+||||+++|.+|+.|||||||.||+|+++|+||+|||++|+++| |++++||+++||+|+|||+||+++|+|.||++
T Consensus        80 ~Lr~wlgi~g~v~~p~~ehpkrpv~G~~c~~~E~Sg~rlW~l~~~~~-G~~~~Fy~~~~v~Ni~PL~f~~p~G~~~t~d~  158 (247)
T 1oe4_A           80 HVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTD  158 (247)
T ss_dssp             HHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHH-SSHHHHHTTEEEEESCCCEEECTTCCEECGGG
T ss_pred             HHHHHhcCCccccCcccccccccccCcccccccccchhHHHHHHHhh-ccHHHhccccceeeecCcccccCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999899999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhhHHHHHHH
Q psy9259         221 LKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKL  300 (489)
Q Consensus       221 l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aL  300 (489)
                      +|.. |+++|+++|+++|+++|+++++++||+||+||+++++.++++++. .+++++|+||||+|+++|++|+++++++|
T Consensus       159 ~p~~-e~~~l~~~C~~~l~~~l~~l~~~~vv~IG~yA~~~l~~~v~~~~~-~~~v~~L~HPSprn~~an~~W~~~a~~~l  236 (247)
T 1oe4_A          159 LPKA-QRDTLLEICDEALCQAVRVLGVKLVIGVGRFSEQRARKALMAEGI-DVTVKGIMHPSPRNPQANKGWEGIVRGQL  236 (247)
T ss_dssp             SCHH-HHHHHHHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHHHHTTC-SCEEEEECCCCTTCGGGTTTHHHHHHHHH
T ss_pred             CChH-HHHhHHHHHHHHHHHHHhccCceEEEEECHHHHHHHHHHHHhhcc-CCCeEEeCCCCCCCcccccCHHHHHHHHH
Confidence            9966 999999999999999999999999999999999999999998874 69999999999999999999999999999


Q ss_pred             HhcCcccccc
Q psy9259         301 KDLGVLHYFT  310 (489)
Q Consensus       301 eEAgvL~~L~  310 (489)
                      +++|+|++|+
T Consensus       237 ~~~g~~~~~~  246 (247)
T 1oe4_A          237 LELGVLSLLT  246 (247)
T ss_dssp             HHHTCHHHHC
T ss_pred             HHCCcHHhhc
Confidence            9999998876
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans} Back     alignment and structure
>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer CL thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus} PDB: 2ddg_A* 2dem_A* 2dp6_A* Back     alignment and structure
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A Back     alignment and structure
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 3uob_A* 2rba_A* 3ufj_A* 3uo7_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A {Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A* 1mwj_A Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A Back     alignment and structure
>2l3f_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A* Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d1oe4a_245 c.18.1.3 (A:) Single-strand selective monofunction 6e-97
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 4e-05
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 6e-04
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
domain: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  290 bits (744), Expect = 6e-97
 Identities = 118/248 (47%), Positives = 160/248 (64%), Gaps = 5/248 (2%)

Query: 63  IAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGM 122
            A+  L +E +L  +L  SN+ ++ PV+YVYNPL YA+  H  YV  YC SKK++LFLGM
Sbjct: 3   PADSFLKVELELNLKL--SNLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLGM 60

Query: 123 NPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWEL 182
           NPGP+GM Q G+PFGEV  V+ +L IEG V++PE  H  R I+G +CP+SE+SG R W L
Sbjct: 61  NPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSL 120

Query: 183 ASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIV 242
              L  G+   FFKH +VHN+ PL F++ +  N+TP +L  K   + L  ICD++L   V
Sbjct: 121 FKSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTDLP-KAQRDTLLEICDEALCQAV 178

Query: 243 KHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKD 302
           + LG++ VI +G+F+E RA KAL +     V V  I HPSPRNP +NK W      +L +
Sbjct: 179 RVLGVKLVIGVGRFSEQRARKALMAEG-IDVTVKGIMHPSPRNPQANKGWEGIVRGQLLE 237

Query: 303 LGVLHYFT 310
           LGVL   T
Sbjct: 238 LGVLSLLT 245
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1oe4a_245 Single-strand selective monofunctional uracil-DNA 100.0
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 99.96
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 99.96
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 99.95
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 99.95
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 99.94
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 99.94
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 99.94
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 99.93
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 99.91
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.84
d1muga_165 G:T/U mismatch-specific DNA glycosylase, Mug {Esch 99.17
d1ui0a_192 Thermophilic uracil-DNA glycosylase {Thermus therm 99.09
d1vk2a_191 Thermophilic uracil-DNA glycosylase {Thermotoga ma 98.92
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 95.96
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 95.8
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 95.31
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 95.02
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 94.62
d3euga_225 Uracil-DNA glycosylase {Escherichia coli [TaxId: 5 91.99
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 91.44
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 91.12
d1laue_228 Uracil-DNA glycosylase {Herpes simplex virus type 88.45
d2hxma1223 Uracil-DNA glycosylase {Human (Homo sapiens) [TaxI 87.23
d2j8xa1230 Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 83.3
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
domain: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=2.3e-87  Score=649.98  Aligned_cols=245  Identities=48%  Similarity=0.898  Sum_probs=239.6

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCcccCCCceEEecchhhHHHHHHHHHHHHhcCCCcEEEEeecCCCccccccCcccCChh
Q psy9259          61 NDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVK  140 (489)
Q Consensus        61 ~~~~~~~~~~~~~l~~~l~~~~l~f~~p~~~vyNP~~ya~~~h~~y~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~  140 (489)
                      +++|++||++|++|+++|+  +|.|++||.+|||||+|||++|++|+++|++.++|+||||||||||||+||||||||+.
T Consensus         1 ~~~a~~~~~~~~~l~~~l~--~l~f~~pv~~vyNPl~YA~~~H~~Yl~~y~~~~~~~l~lGmNPGp~Gm~qTGVPFgd~~   78 (245)
T d1oe4a_           1 ESPADSFLKVELELNLKLS--NLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLGMNPGPFGMAQTGVPFGEVN   78 (245)
T ss_dssp             CCCHHHHHHHHHHHHHHHH--TCCCCTTCCEEECHHHHTHHHHHHHHHHHCSSCCSEEEEESSCCTTTHHHHSSTTCCHH
T ss_pred             CcHHHHHHHHHHHHHHHHH--hccCCCCeeEEECHHHHhHHHHHHHHHHHcCCCCCEEEEecCCCCCcCcccCcCcCCHH
Confidence            3679999999999999999  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCCchhhhhhhchhhccccccccccCCCCCCCCC
Q psy9259         141 AVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAE  220 (489)
Q Consensus       141 ~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~  220 (489)
                      +|||||||+++|.+|+.|||||||+||+|+++|+||+|||++++++| |+||+||++|||+|||||+|+.++|+|+||++
T Consensus        79 ~vr~~l~I~~~v~~P~~~HPKRpi~Gl~~~r~EvSg~rlW~l~~~~~-g~pe~ff~~~fv~N~CPL~f~~e~GkN~TP~~  157 (245)
T d1oe4a_          79 HVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTD  157 (245)
T ss_dssp             HHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHH-SSHHHHHTTEEEEESCCCEEECTTCCEECGGG
T ss_pred             HHHHHhcCCCccCCCcccCCCCccccccccccccHHHHHHHHHHHHc-CCHHHHHhhhheeecCCccccCCCCCCCCchh
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhhHHHHHHH
Q psy9259         221 LKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKL  300 (489)
Q Consensus       221 l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aL  300 (489)
                      ||+. ++++|.++||++|+++|++|+|++|||||+||++|+++++...+. +++|.+++||||+||.+|++|.|.++..|
T Consensus       158 l~~~-~~~~l~~~Cd~~L~~~v~~L~p~~VIgVG~~Ae~ra~~al~~~g~-~v~v~~i~HPSPasp~aN~~W~e~a~~~L  235 (245)
T d1oe4a_         158 LPKA-QRDTLLEICDEALCQAVRVLGVKLVIGVGRFSEQRARKALMAEGI-DVTVKGIMHPSPRNPQANKGWEGIVRGQL  235 (245)
T ss_dssp             SCHH-HHHHHHHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHHHHTTC-SCEEEEECCCCTTCGGGTTTHHHHHHHHH
T ss_pred             cCHH-HHHHHHHHHHHHHHHHHHhcCceEEEEeCHHHHHHHHHHhhccCC-CceEeeCCCCCCCChhcccCcHHHHHHHH
Confidence            9999 999999999999999999999999999999999999999987776 59999999999999999999999999999


Q ss_pred             HhcCcccccc
Q psy9259         301 KDLGVLHYFT  310 (489)
Q Consensus       301 eEAgvL~~L~  310 (489)
                      +++|+|++|.
T Consensus       236 ~~~g~~~~l~  245 (245)
T d1oe4a_         236 LELGVLSLLT  245 (245)
T ss_dssp             HHHTCHHHHC
T ss_pred             HHCcchhhcC
Confidence            9999998874
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]} Back     information, alignment and structure
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]} Back     information, alignment and structure