Psyllid ID: psy9266

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MKIYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSDM
Secondary Structure (PSIPRED)
ccccccccccccEEEEccHHHHHHHHccccEEEEEccccccccccccccccEEEEEEcccccccEEEEEEEEEcccccEEccccEEEEcccccccccccccEEEccccccccHHHHcccccccEEEEEcccccccccEEEcccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccHHHHHHHHHHccEEEcccccEcEEcccccccccEEEEEEccccccEEEEEEEEEEcccccEEEcccEEEccccccccccccccEEEccccccccHHHHHcEEEHcEEEEcccccccccEEEEcccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mkiyadadfsnVEVTLVNADLWQNFHAIGTEMIITKtgrtkistrgrmfpslqlqvsglDQAAHYSLLVEFHlasphkykyktswepvgdaerpiahpaarlyshpaghalgsfwtgqtlHLNKIKLANAFVEGTRFLEVRHLLLIypqcgqiqsdm
Flexible Loop (DISEMBL)
mkiyadadfsnVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLiypqcgqiqsdm
Low Complexity Region (SEG)
MKIYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSDM
Disordered region (IsUnstruct)
***YADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQ*****
Disordered Region (DISOPRED)
*************VTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDA*****HPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSDM
Disordered Region (DISEMBL)
MKIYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSDM
Disordered Region (DISPRO)
********FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKIYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q66JL1	517	T-box transcription facto	yes	N/A	0.694	0.210	0.425	6e-19
Q8AV66	506	T-box transcription facto	N/A	N/A	0.694	0.215	0.425	3e-18
P79779	361	T-box-containing protein	yes	N/A	0.700	0.304	0.429	5e-18
P87377	455	T-box protein VegT-A OS=X	N/A	N/A	0.872	0.301	0.364	8e-18
Q28HY0	455	T-box protein VegT OS=Xen	no	N/A	0.872	0.301	0.364	9e-18
Q9U903	453	Brachyury protein homolog	N/A	N/A	0.732	0.253	0.380	1e-17
Q98UD2	454	T-box protein VegT OS=Xen	N/A	N/A	0.872	0.301	0.358	2e-17
P70325	552	T-box transcription facto	yes	N/A	0.694	0.197	0.4	2e-17
Q861Q9	554	T-box transcription facto	yes	N/A	0.694	0.196	0.4	3e-17
P57082	545	T-box transcription facto	yes	N/A	0.694	0.2	0.4	3e-17

>sp|Q66JL1|TBX6_XENTR T-box transcription factor TBX6 OS=Xenopus tropicalis GN=tbx6 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
           NV++ L N +LW+ FH+IGTEMIITK+GR       RMFP  ++ V+GL+    Y LL +
Sbjct: 95  NVKMNLENKELWKQFHSIGTEMIITKSGR-------RMFPQCKVSVTGLEPDGKYLLLAD 147

Query: 71  FHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
                  +YK++   WEP G AE  +     R+Y HP   A GS W  Q +  +KIKL N
Sbjct: 148 IVPIDNSRYKWQEDRWEPSGRAEPRLPE---RVYIHPDSPAPGSHWMKQPISFHKIKLTN 204

Transcriptional activator. Plays a role in ventral mesoderm specification and acts together with nog during muscle differentiation. Mediates posterior pattern formation of the embryo, including specification of posterior mesoderm, via activation of the Wnt and Fgf signaling pathways.
Xenopus tropicalis (taxid: 8364)

>sp|Q8AV66|TBX6_XENLA T-box transcription factor TBX6 OS=Xenopus laevis GN=tbx6 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
           NV++ L N +LW+ FH+IGTEMIITK+GR       RMFP  ++ VSGL+    Y LL +
Sbjct: 95  NVKMKLENKELWKQFHSIGTEMIITKSGR-------RMFPQCKVSVSGLEADGKYLLLAD 147

Query: 71  FHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
                  +YK++   WE  G AE  +     R+Y HP   A GS W  Q +  +KIKL N
Sbjct: 148 LLPVDNSRYKWQEDHWEASGRAEPRLPE---RVYIHPDSPAPGSHWMKQPISFHKIKLTN 204

Transcriptional activator. Plays a role in ventral mesoderm specification and acts together with nog during muscle differentiation. Mediates posterior pattern formation of the embryo, including specification of posterior mesoderm, via activation of the Wnt and Fgf signaling pathways.

Xenopus laevis (taxid: 8355)

>sp|P79779|TBX6L_CHICK T-box-containing protein TBX6L (Fragment) OS=Gallus gallus GN=TBX6L PE=2 SV=1

 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 67/121 (55%), Gaps = 11/121 (9%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
           S++ VTL +  LW  FH IGTEMIITK+GR       RMFP  +++VSGL   A Y +LV
Sbjct: 25  SSITVTLEDMGLWMKFHQIGTEMIITKSGR-------RMFPQCKIKVSGLIPYAKYLMLV 77

Query: 70  EFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
           +F      +YK+ K  WE  G AE  +     R Y HP   A GS W  + +   K+KL 
Sbjct: 78  DFVPVDNFRYKWNKDQWEVAGKAEPQL---PCRTYVHPDSPAPGSHWMKEPVSFQKLKLT 134

Query: 129 N 129
           N
Sbjct: 135 N 135

May be involved in regulating somitogenesis.

Gallus gallus (taxid: 9031)

>sp|P87377|VEGTA_XENLA T-box protein VegT-A OS=Xenopus laevis GN=vegt-a PE=1 SV=2

 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 11/148 (7%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
           + V  +L + DLW  FH  GTEMIITK+GR       RMFP  ++++ GL   A Y LLV
Sbjct: 46  NTVGASLEDQDLWSQFHQEGTEMIITKSGR-------RMFPQCKIRLFGLHPYAKYMLLV 98

Query: 70  EFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
           +F      +YK+ K  WE  G AE    HP  R Y HP   A G+ W    +   K+KL 
Sbjct: 99  DFVPLDNFRYKWNKNQWEAAGKAE---PHPPCRTYVHPDSPAPGAHWMKDPICFQKLKLT 155

Query: 129 NAFVEGTRFLEVRHLLLIYPQCGQIQSD 156
           N  ++    + +  +    P+   +QSD
Sbjct: 156 NNTLDQQGHIILHSMHRYKPRFHVVQSD 183

Transcription factor required for both mesoderm and endoderm formation in the embryo; signaling determinants and concentration levels may determine which germ layer is formed. Acts together with beta-catenin to activate genes that are responsible for mesoderm induction including wnt-8, eomes t/bra, siamois, mix1 and sox17. Directly binds to promoter DNA. Patterns the mesoderm along the dorsoventral and posterior axis. Activates siamois gene transcription when alone or in combination with beta-catenin, but inhibits siamois transcription in combination with pou5f1.1/oct-25.

Xenopus laevis (taxid: 8355)

>sp|Q28HY0|VEGT_XENTR T-box protein VegT OS=Xenopus tropicalis GN=vegt PE=2 SV=1

 Score = 89.4 bits (220), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 76/148 (51%), Gaps = 11/148 (7%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
           ++V  +L + DLW  FH  GTEMIITK+GR       RMFP  ++++ GL   A Y LLV
Sbjct: 46  NSVGASLEDQDLWAQFHQEGTEMIITKSGR-------RMFPQCKIRLFGLHPYAKYMLLV 98

Query: 70  EFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
           +F      +YK+ K  WE  G AE    HP  R Y HP   A G+ W    +   K+KL 
Sbjct: 99  DFVPLDNFRYKWNKNQWEAAGKAE---PHPPCRTYVHPDSPAPGAHWMKDAICFQKLKLT 155

Query: 129 NAFVEGTRFLEVRHLLLIYPQCGQIQSD 156
           N  ++    + +  +    P+   +QSD
Sbjct: 156 NNTLDQQGHIILHSMHRYKPRFHVVQSD 183

Transcription factor required for both mesoderm and endoderm formation in the embryo; signaling determinants and concentration levels may determine which germ layer is formed. Acts together with beta-catenin to activate genes that are responsible for mesoderm induction including wnt-8, eomes t/bra, siamois, mix1 and sox17. Directly binds to promoter DNA. Patterns the mesoderm along the dorsoventral and posterior axis. Activates siamois gene transcription when alone or in combination with beta-catenin, but inhibits siamois transcription in combination with pou5f1.1/oct-25.

Xenopus tropicalis (taxid: 8364)

>sp|Q9U903|BRA_ASTPE Brachyury protein homolog OS=Asterina pectinifera GN=Bra PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 11/126 (8%)

Query: 5   ADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAH 64
            D     ++VTL + DLW+ F  +  EMI+TKTGR       RMFP L   V+GL+  A 
Sbjct: 31  GDPSEKGLKVTLEDRDLWRRFSKLTNEMIVTKTGR-------RMFPVLSASVTGLNPNAM 83

Query: 65  YSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLN 123
           YS+L++F  A  H++KY    W P G  + P   P +  Y HP     G+ W  Q +  +
Sbjct: 84  YSILLDFTPADEHRWKYVNGEWVPGGKPDSP---PPSTAYIHPDSPNFGAHWMKQCVSFS 140

Query: 124 KIKLAN 129
           K+KL+N
Sbjct: 141 KVKLSN 146

May be involved in the transcriptional regulation of genes required for gastrulation.

Asterina pectinifera (taxid: 7594)

>sp|Q98UD2|VEGT_XENBO T-box protein VegT OS=Xenopus borealis GN=vegt PE=2 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 11/148 (7%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
           +++  +L + DLW  FH  GTEMIITK+GR       RMFP  ++++ GL   A Y LLV
Sbjct: 46  NSIGASLQDQDLWSQFHQEGTEMIITKSGR-------RMFPQCKIRLFGLHLYAKYMLLV 98

Query: 70  EFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
           +F      +YK+ K  WE  G AE    HP  R Y HP   A G+ W    +   K+KL 
Sbjct: 99  DFVPLDNFRYKWNKNQWEAAGKAE---PHPPCRTYVHPDSPASGAHWMKDPICFQKLKLT 155

Query: 129 NAFVEGTRFLEVRHLLLIYPQCGQIQSD 156
           N  ++    + +  +    P+   +QSD
Sbjct: 156 NNTLDQQGHIILHSMHRYKPRFHVVQSD 183

Transcription factor required for both mesoderm and endoderm formation in the embryo; signaling determinants and concentration levels may determine which germ layer is formed. Acts together with beta-catenin to activate genes that are responsible for mesoderm induction including wnt-8, eomes t/bra, siamois, mix1 and sox17. Directly binds to promoter DNA. Patterns the mesoderm along the dorsoventral and posterior axis. Activates siamois gene transcription when alone or in combination with beta-catenin, but inhibits siamois transcription in combination with pou5f1.1/oct-25.

Xenopus borealis (taxid: 8354)

>sp|P70325|TBX4_MOUSE T-box transcription factor TBX4 OS=Mus musculus GN=Tbx4 PE=2 SV=3

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
           N++V L   +LW+ FH  GTEMIITK GR       RMFPS +++V+G++    Y LL++
Sbjct: 71  NIKVGLHEKELWKKFHEAGTEMIITKAGR-------RMFPSYKVKVTGMNPKTKYILLID 123

Query: 71  FHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
              A  H+YK+    W   G AE  +     RLY HP   A G+ W  Q +   K+KL N
Sbjct: 124 IVPADDHRYKFCDNKWMVAGKAEPAM---PGRLYVHPDSPATGAHWMRQLVSFQKLKLTN 180

Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation.

Mus musculus (taxid: 10090)

>sp|Q861Q9|TBX4_CANFA T-box transcription factor TBX4 OS=Canis familiaris GN=TBX4 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
           N++V L   +LW+ FH  GTEMIITK GR       RMFPS +++V+G++    Y LL++
Sbjct: 73  NIKVGLHEKELWKKFHEAGTEMIITKAGR-------RMFPSYKVKVTGMNPKTKYILLID 125

Query: 71  FHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
              A  H+YK+    W   G AE  +     RLY HP   A G+ W  Q +   K+KL N
Sbjct: 126 IVPADDHRYKFCDNKWMVAGKAEPAM---PGRLYVHPDSPATGAHWMRQLVSFQKLKLTN 182

Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation.

Canis familiaris (taxid: 9615)

>sp|P57082|TBX4_HUMAN T-box transcription factor TBX4 OS=Homo sapiens GN=TBX4 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
           N++V L   +LW+ FH  GTEMIITK GR       RMFPS +++V+G++    Y LL++
Sbjct: 66  NIKVGLHEKELWKKFHEAGTEMIITKAGR-------RMFPSYKVKVTGMNPKTKYILLID 118

Query: 71  FHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
              A  H+YK+    W   G AE  +     RLY HP   A G+ W  Q +   K+KL N
Sbjct: 119 IVPADDHRYKFCDNKWMVAGKAEPAM---PGRLYVHPDSPATGAHWMRQLVSFQKLKLTN 175

Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
195442611	540	GK12279 [Drosophila willistoni] gi|19416	0.745	0.216	0.429	7e-21
158294954	462	AGAP005895-PA [Anopheles gambiae str. PE	0.707	0.240	0.459	9e-21
170037513	398	tbx6 [Culex quinquefasciatus] gi|1678807	0.700	0.276	0.454	1e-20
195490974	466	GE21264 [Drosophila yakuba] gi|194179468	0.745	0.251	0.429	2e-20
195326201	467	GM24895 [Drosophila sechellia] gi|194118	0.745	0.250	0.429	2e-20
21355555	469	Dorsocross2 [Drosophila melanogaster] gi	0.745	0.249	0.429	2e-20
194748819	461	GF10130 [Drosophila ananassae] gi|190624	0.745	0.253	0.429	2e-20
195588941	391	GD14149 [Drosophila simulans] gi|1941962	0.796	0.319	0.411	2e-20
195326205	391	GM25113 [Drosophila sechellia] gi|194118	0.796	0.319	0.411	2e-20
194865718	467	GG15041 [Drosophila erecta] gi|190653352	0.745	0.250	0.429	2e-20

>gi|195442611|ref|XP_002069046.1| GK12279 [Drosophila willistoni] gi|194165131|gb|EDW80032.1| GK12279 [Drosophila willistoni]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 9   FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLL 68
              VE+TL N DLW+ FH IGTEMIITK+GR       RMFPS++L V+GLD+  +Y +L
Sbjct: 53  LPGVEMTLQNDDLWKQFHQIGTEMIITKSGR-------RMFPSMRLSVAGLDEETNYCVL 105

Query: 69  VEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKL 127
           +E       +YK+  S W P G AE        R+Y HP   A G+ W  Q +  NK+KL
Sbjct: 106 LEMVPIGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQAQPILFNKVKL 162

Query: 128 ANAFVEGT 135
            N  ++ +
Sbjct: 163 TNNTLDNS 170

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294954|ref|XP_315924.3| AGAP005895-PA [Anopheles gambiae str. PEST] gi|157015805|gb|EAA11903.3| AGAP005895-PA [Anopheles gambiae str. PEST]

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 73/122 (59%), Gaps = 11/122 (9%)

Query: 9   FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLL 68
             +V++ L N DLW  FH IGTEMIITK+GR       RMFPS++L V+GL+   +Y +L
Sbjct: 53  LPDVDIKLQNRDLWSQFHKIGTEMIITKSGR-------RMFPSMRLSVNGLEAEENYFIL 105

Query: 69  VEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKL 127
           +E    S  ++K+  S W P G AE        R+Y HP G ALGS WT Q +  NK+KL
Sbjct: 106 LEMVPISDCRFKFSGSQWVPAGGAE---PQSPQRIYFHPDGPALGSHWTSQPIVFNKVKL 162

Query: 128 AN 129
            N
Sbjct: 163 TN 164

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037513|ref|XP_001846602.1| tbx6 [Culex quinquefasciatus] gi|167880710|gb|EDS44093.1| tbx6 [Culex quinquefasciatus]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 11/121 (9%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
           + VEV L N D+W +FH IGTEMIITK+GR       RMFPS++L  +GL+   +Y +L+
Sbjct: 46  AEVEVKLQNRDMWSDFHRIGTEMIITKSGR-------RMFPSMRLSFNGLEADENYCVLI 98

Query: 70  EFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
           E    S  ++K+  S W P G AE        R Y HP   ALGS WT Q ++ NK+KL 
Sbjct: 99  EMVPISDCRFKFSGSQWVPAGGAE---PQSPQRFYQHPDSPALGSHWTSQPVNFNKVKLT 155

Query: 129 N 129
           N
Sbjct: 156 N 156

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490974|ref|XP_002093367.1| GE21264 [Drosophila yakuba] gi|194179468|gb|EDW93079.1| GE21264 [Drosophila yakuba]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 9   FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLL 68
              VE+TL N DLW+ FH IGTEMIITK+GR       RMFPS++L VSGL+  ++Y +L
Sbjct: 53  LPGVEMTLQNDDLWKQFHQIGTEMIITKSGR-------RMFPSMRLSVSGLEDESNYCVL 105

Query: 69  VEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKL 127
           +E       +YK+  S W P G AE        R+Y HP   A G+ W  Q +  NK+KL
Sbjct: 106 LEMVPMGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQAQPILFNKVKL 162

Query: 128 ANAFVEGT 135
            N  ++ +
Sbjct: 163 TNNTLDNS 170

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326201|ref|XP_002029818.1| GM24895 [Drosophila sechellia] gi|194118761|gb|EDW40804.1| GM24895 [Drosophila sechellia]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 9   FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLL 68
              VE+TL N DLW+ FH IGTEMIITK+GR       RMFPS++L VSGL+  ++Y +L
Sbjct: 53  LPGVEMTLQNDDLWKQFHQIGTEMIITKSGR-------RMFPSMRLSVSGLEDESNYCVL 105

Query: 69  VEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKL 127
           +E       +YK+  S W P G AE        R+Y HP   A G+ W  Q +  NK+KL
Sbjct: 106 LEMVPIGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQAQPILFNKVKL 162

Query: 128 ANAFVEGT 135
            N  ++ +
Sbjct: 163 TNNTLDNS 170

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355555|ref|NP_648282.1| Dorsocross2 [Drosophila melanogaster] gi|20136131|gb|AAM11544.1|AF444796_1 Dorsocross2 [Drosophila melanogaster] gi|20136133|gb|AAM11545.1|AF444797_1 Dorsocross2 [Drosophila melanogaster] gi|7295001|gb|AAF50329.1| Dorsocross2 [Drosophila melanogaster] gi|19527593|gb|AAL89911.1| RE40937p [Drosophila melanogaster] gi|220942500|gb|ACL83793.1| Doc2-PA [synthetic construct] gi|220952710|gb|ACL88898.1| Doc2-PA [synthetic construct]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 9   FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLL 68
              VE+TL N DLW+ FH IGTEMIITK+GR       RMFPS++L VSGL+  ++Y +L
Sbjct: 53  LPGVEMTLQNDDLWKQFHQIGTEMIITKSGR-------RMFPSMRLSVSGLEDESNYCVL 105

Query: 69  VEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKL 127
           +E       +YK+  S W P G AE        R+Y HP   A G+ W  Q +  NK+KL
Sbjct: 106 LEMVPIGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQAQPILFNKVKL 162

Query: 128 ANAFVEGT 135
            N  ++ +
Sbjct: 163 TNNTLDNS 170

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194748819|ref|XP_001956839.1| GF10130 [Drosophila ananassae] gi|190624121|gb|EDV39645.1| GF10130 [Drosophila ananassae]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 9   FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLL 68
              VE+TL N DLW+ FH IGTEMIITK+GR       RMFPS++L VSGL+  ++Y +L
Sbjct: 53  LPGVEMTLQNDDLWKQFHQIGTEMIITKSGR-------RMFPSMRLSVSGLEDESNYCVL 105

Query: 69  VEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKL 127
           +E       +YK+  S W P G AE        R+Y HP   A G+ W  Q +  NK+KL
Sbjct: 106 LEMVPIGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQAQPILFNKVKL 162

Query: 128 ANAFVEGT 135
            N  ++ +
Sbjct: 163 TNNTLDNS 170

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195588941|ref|XP_002084215.1| GD14149 [Drosophila simulans] gi|194196224|gb|EDX09800.1| GD14149 [Drosophila simulans]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 75/136 (55%), Gaps = 11/136 (8%)

Query: 1   MKIYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLD 60
           M + +      VE  L N DLWQ FH IGTEMIITK+GR       RMFPS+++ +SGL+
Sbjct: 48  MMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGR-------RMFPSMRVSLSGLE 100

Query: 61  QAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQT 119
           + A Y +L+E       +YK+  S W P G AE        R+Y HP   A G+ W  Q 
Sbjct: 101 EEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQSQA 157

Query: 120 LHLNKIKLANAFVEGT 135
           L  NK+KL N  ++ +
Sbjct: 158 LLFNKVKLTNNTLDSS 173

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326205|ref|XP_002029820.1| GM25113 [Drosophila sechellia] gi|194118763|gb|EDW40806.1| GM25113 [Drosophila sechellia]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 75/136 (55%), Gaps = 11/136 (8%)

Query: 1   MKIYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLD 60
           M + +      VE  L N DLWQ FH IGTEMIITK+GR       RMFPS+++ +SGL+
Sbjct: 48  MMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGR-------RMFPSMRVSLSGLE 100

Query: 61  QAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQT 119
           + A Y +L+E       +YK+  S W P G AE        R+Y HP   A G+ W  Q 
Sbjct: 101 EEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQSQA 157

Query: 120 LHLNKIKLANAFVEGT 135
           L  NK+KL N  ++ +
Sbjct: 158 LLFNKVKLTNNTLDSS 173

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865718|ref|XP_001971569.1| GG15041 [Drosophila erecta] gi|190653352|gb|EDV50595.1| GG15041 [Drosophila erecta]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 9   FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLL 68
              VE+TL N DLW+ FH IGTEMIITK+GR       RMFPS++L VSGL+  ++Y +L
Sbjct: 53  LPGVEMTLQNDDLWKQFHQIGTEMIITKSGR-------RMFPSMRLSVSGLEDESNYCVL 105

Query: 69  VEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKL 127
           +E       +YK+  S W P G AE        R+Y HP   A G+ W  Q +  NK+KL
Sbjct: 106 LEMVPIGDCRYKFSGSQWVPAGGAE---PQSPQRMYLHPDSPATGAHWQAQPILFNKVKL 162

Query: 128 ANAFVEGT 135
            N  ++ +
Sbjct: 163 TNNTLDNS 170

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
FB|FBgn0028789	391	Doc1 "Dorsocross1" [Drosophila	0.853	0.342	0.413	8.3e-21
FB|FBgn0035956	469	Doc2 "Dorsocross2" [Drosophila	0.687	0.230	0.478	1.2e-20
FB|FBgn0035954	424	Doc3 "Dorsocross3" [Drosophila	0.872	0.323	0.395	1e-19
UNIPROTKB|F1NT23	361	TBX6 "Uncharacterized protein"	0.866	0.376	0.389	4e-18
UNIPROTKB|P79779	361	TBX6L "T-box-containing protei	0.866	0.376	0.389	4e-18
UNIPROTKB|F1P3K1	452	TBX6 "Uncharacterized protein"	0.866	0.300	0.389	1e-17
UNIPROTKB|Q66JL1	517	tbx6 "T-box transcription fact	0.694	0.210	0.425	1.1e-17
UNIPROTKB|P57082	545	TBX4 "T-box transcription fact	0.732	0.211	0.412	1.3e-17
UNIPROTKB|A5PKU7	546	TBX4 "TBX4 protein" [Homo sapi	0.732	0.210	0.412	1.3e-17
UNIPROTKB|F8SIP7	551	TBX4 "T-box 4 protein" [Sus sc	0.732	0.208	0.412	1.3e-17

FB|FBgn0028789 Doc1 "Dorsocross1" [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 8.3e-21, P = 8.3e-21
 Identities = 60/145 (41%), Positives = 83/145 (57%)

Query:    12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
             VE  L N DLWQ FH IGTEMIITK+GR       RMFPS+++ +SGL++ A Y +L+E 
Sbjct:    59 VEAKLDNNDLWQQFHKIGTEMIITKSGR-------RMFPSMRVSLSGLEEEASYCVLLEM 111

Query:    72 HLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANA 130
                   +YK+  S W P G AE P + P  R+Y HP   A G+ W  Q L  NK+KL N 
Sbjct:   112 VPIGDCRYKFSGSQWVPAGGAE-PQS-PQ-RMYLHPDSPATGAHWQSQALLFNKVKLTNN 168

Query:   131 FVEGTRFLEVRHLLLIYPQCGQIQS 155
              ++ +  + +  +    P+   I+S
Sbjct:   169 TLDSSGHIVLASMHKYQPRLHIIRS 193

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007507 "heart development" evidence=TAS

GO:0035294 "determination of wing disc primordium" evidence=IMP

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0061327 "anterior Malpighian tubule development" evidence=IMP

FB|FBgn0035956 Doc2 "Dorsocross2" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 57/119 (47%), Positives = 74/119 (62%)

Query:    12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
             VE+TL N DLW+ FH IGTEMIITK+GR       RMFPS++L VSGL+  ++Y +L+E 
Sbjct:    56 VEMTLQNDDLWKQFHQIGTEMIITKSGR-------RMFPSMRLSVSGLEDESNYCVLLEM 108

Query:    72 HLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
                   +YK+  S W P G AE P + P  R+Y HP   A G+ W  Q +  NK+KL N
Sbjct:   109 VPIGDCRYKFSGSQWVPAGGAE-PQS-PQ-RMYLHPDSPATGAHWQAQPILFNKVKLTN 164

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0061327 "anterior Malpighian tubule development" evidence=IMP

FB|FBgn0035954 Doc3 "Dorsocross3" [Drosophila melanogaster (taxid:7227)]

 Score = 239 (89.2 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 59/149 (39%), Positives = 84/149 (56%)

Query:    11 NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
             +VE  L N +LWQ FH+IGTEMIITK GR       RMFPS+++ +SGL++ A Y +L+E
Sbjct:    58 DVEAKLENNELWQQFHSIGTEMIITKCGR-------RMFPSMRVSLSGLEEEASYCVLLE 110

Query:    71 FHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
                    +YK+  S W P G AE P + P  R+Y HP   A G  W  Q L  +K+KL N
Sbjct:   111 MVPIGDCRYKFSGSQWVPAGGAE-PQS-PQ-RMYLHPESPATGKHWQSQALLFSKVKLTN 167

Query:   130 AFVEGTRFLEVRHLLLIYPQCGQIQ-SDM 157
               ++    + +  +    P+   I+ SD+
Sbjct:   168 NTLDNNGHIVLASMHKYQPRLHVIRTSDL 196

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0061327 "anterior Malpighian tubule development" evidence=IMP

UNIPROTKB|F1NT23 TBX6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 4.0e-18, P = 4.0e-18
 Identities = 58/149 (38%), Positives = 81/149 (54%)

Query:    10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
             S++ VTL +  LW  FH IGTEMIITK+GR       RMFP  +++VSGL   A Y +LV
Sbjct:    25 SSITVTLEDMGLWMKFHQIGTEMIITKSGR-------RMFPQCKIKVSGLIPYAKYLMLV 77

Query:    70 EFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
             +F      +YK+ K  WE  G AE  +  P  R Y HP   A GS W  + +   K+KL 
Sbjct:    78 DFVPVDNFRYKWNKDQWEVAGKAEPQL--PC-RTYVHPDSPAPGSHWMKEPVSFQKLKLT 134

Query:   129 NAFVEGTRFLEVRHLLLIY-PQCGQIQSD 156
             N  ++    + + H +  Y P+   +Q+D
Sbjct:   135 NNTLDQHGHI-ILHSMHRYKPRFHIVQAD 162

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P79779 TBX6L "T-box-containing protein TBX6L" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 4.0e-18, P = 4.0e-18
 Identities = 58/149 (38%), Positives = 81/149 (54%)

Query:    10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
             S++ VTL +  LW  FH IGTEMIITK+GR       RMFP  +++VSGL   A Y +LV
Sbjct:    25 SSITVTLEDMGLWMKFHQIGTEMIITKSGR-------RMFPQCKIKVSGLIPYAKYLMLV 77

Query:    70 EFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
             +F      +YK+ K  WE  G AE  +  P  R Y HP   A GS W  + +   K+KL 
Sbjct:    78 DFVPVDNFRYKWNKDQWEVAGKAEPQL--PC-RTYVHPDSPAPGSHWMKEPVSFQKLKLT 134

Query:   129 NAFVEGTRFLEVRHLLLIY-PQCGQIQSD 156
             N  ++    + + H +  Y P+   +Q+D
Sbjct:   135 NNTLDQHGHI-ILHSMHRYKPRFHIVQAD 162

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P3K1 TBX6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 58/149 (38%), Positives = 81/149 (54%)

Query:    10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
             S++ VTL +  LW  FH IGTEMIITK+GR       RMFP  +++VSGL   A Y +LV
Sbjct:    25 SSITVTLEDMGLWMKFHQIGTEMIITKSGR-------RMFPQCKIKVSGLIPYAKYLMLV 77

Query:    70 EFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
             +F      +YK+ K  WE  G AE  +  P  R Y HP   A GS W  + +   K+KL 
Sbjct:    78 DFVPVDNFRYKWNKDQWEVAGKAEPQL--PC-RTYVHPDSPAPGSHWMKEPVSFQKLKLT 134

Query:   129 NAFVEGTRFLEVRHLLLIY-PQCGQIQSD 156
             N  ++    + + H +  Y P+   +Q+D
Sbjct:   135 NNTLDQHGHI-ILHSMHRYKPRFHIVQAD 162

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q66JL1 tbx6 "T-box transcription factor TBX6" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 223 (83.6 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 51/120 (42%), Positives = 69/120 (57%)

Query:    11 NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
             NV++ L N +LW+ FH+IGTEMIITK+GR       RMFP  ++ V+GL+    Y LL +
Sbjct:    95 NVKMNLENKELWKQFHSIGTEMIITKSGR-------RMFPQCKVSVTGLEPDGKYLLLAD 147

Query:    71 FHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
                    +YK++   WEP G AE  +     R+Y HP   A GS W  Q +  +KIKL N
Sbjct:   148 IVPIDNSRYKWQEDRWEPSGRAEPRLPE---RVYIHPDSPAPGSHWMKQPISFHKIKLTN 204

GO:0001707 "mesoderm formation" evidence=ISS

GO:0007517 "muscle organ development" evidence=ISS

GO:0009880 "embryonic pattern specification" evidence=ISS

GO:0009952 "anterior/posterior pattern specification" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

UNIPROTKB|P57082 TBX4 "T-box transcription factor TBX4" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 52/126 (41%), Positives = 70/126 (55%)

Query:     5 ADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAH 64
             A+    N++V L   +LW+ FH  GTEMIITK GR       RMFPS +++V+G++    
Sbjct:    60 AEQTIENIKVGLHEKELWKKFHEAGTEMIITKAGR-------RMFPSYKVKVTGMNPKTK 112

Query:    65 YSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLN 123
             Y LL++   A  H+YK+    W   G AE P A P  RLY HP   A G+ W  Q +   
Sbjct:   113 YILLIDIVPADDHRYKFCDNKWMVAGKAE-P-AMPG-RLYVHPDSPATGAHWMRQLVSFQ 169

Query:   124 KIKLAN 129
             K+KL N
Sbjct:   170 KLKLTN 175

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0003677 "DNA binding" evidence=NAS

GO:0035108 "limb morphogenesis" evidence=IMP

GO:0048705 "skeletal system morphogenesis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=NAS

UNIPROTKB|A5PKU7 TBX4 "TBX4 protein" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 52/126 (41%), Positives = 70/126 (55%)

Query:     5 ADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAH 64
             A+    N++V L   +LW+ FH  GTEMIITK GR       RMFPS +++V+G++    
Sbjct:    60 AEQTIENIKVGLHEKELWKKFHEAGTEMIITKAGR-------RMFPSYKVKVTGMNPKTK 112

Query:    65 YSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLN 123
             Y LL++   A  H+YK+    W   G AE P A P  RLY HP   A G+ W  Q +   
Sbjct:   113 YILLIDIVPADDHRYKFCDNKWMVAGKAE-P-AMPG-RLYVHPDSPATGAHWMRQLVSFQ 169

Query:   124 KIKLAN 129
             K+KL N
Sbjct:   170 KLKLTN 175

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F8SIP7 TBX4 "T-box 4 protein" [Sus scrofa (taxid:9823)]

 Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 52/126 (41%), Positives = 70/126 (55%)

Query:     5 ADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAH 64
             A+    N++V L   +LW+ FH  GTEMIITK GR       RMFPS +++V+G++    
Sbjct:    63 AEQTIENIKVGLHEKELWKKFHEAGTEMIITKAGR-------RMFPSYKVKVTGMNPKTK 115

Query:    65 YSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLN 123
             Y LL++   A  H+YK+    W   G AE P A P  RLY HP   A G+ W  Q +   
Sbjct:   116 YILLIDIVPADDHRYKFCDNKWMVAGKAE-P-AMPG-RLYVHPDSPATGAHWMRQLVSFQ 172

Query:   124 KIKLAN 129
             K+KL N
Sbjct:   173 KLKLTN 178

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	157
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	1e-35
pfam00907	182	pfam00907, T-box, T-box	2e-33
smart00425	190	smart00425, TBOX, Domain first found in the mice T	5e-32

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score =  121 bits (306), Expect = 1e-35
 Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
            ++V+L N +LW+ FH +GTEMIITK+GR       RMFP+L+++VSGLD  A YS+L++
Sbjct: 1   GIKVSLENRELWKKFHELGTEMIITKSGR-------RMFPTLKVKVSGLDPNALYSVLMD 53

Query: 71  FHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
                 H+YK+    W   G AE    H   R+Y HP   A G+ W  Q +  +K+KL N
Sbjct: 54  LVPVDDHRYKFSGGKWVVAGKAE---PHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTN 110

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score =  115 bits (291), Expect = 2e-33
 Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 11/118 (9%)

Query: 13  EVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFH 72
            V+L + +LW  FH +GTEMIITK+GR       RMFP+L++ VSGLD  A YS+L++F 
Sbjct: 1   TVSLEDRELWDKFHELGTEMIITKSGR-------RMFPTLKVSVSGLDPNALYSVLLDFV 53

Query: 73  LASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
               H+YK+    W   G AE    HP  R+Y HP   A G+ W  Q +  +K+KL N
Sbjct: 54  PVDDHRYKFHNGEWVVAGKAEP---HPPPRVYIHPDSPATGAHWMKQPVSFDKVKLTN 108

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score =  112 bits (282), Expect = 5e-32
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 11/119 (9%)

Query: 12  VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
           ++V+L + +LW+ FH +GTEMI+TK+GR       RMFP+L+ +VSGLD  A YS+L++ 
Sbjct: 1   IKVSLEDKELWRKFHELGTEMIVTKSGR-------RMFPTLKYKVSGLDPNALYSVLMDL 53

Query: 72  HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
                 +YK+    W   G AE    H  +R+Y HP   A G+ W  Q +  +K+KL N
Sbjct: 54  VPVDDKRYKFNNGKWVVAGKAEP---HMPSRVYVHPDSPATGAHWMKQPVSFDKVKLTN 109

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
cd00182	188	TBOX T-box DNA binding domain of the T-box family	100.0
smart00425	190	TBOX Domain first found in the mice T locus (Brach	100.0
KOG3585|consensus	328		100.0
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	100.0
KOG3586|consensus	437		100.0

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=100.00  E-value=3e-54  Score=343.48  Aligned_cols=136  Identities=38%  Similarity=0.745  Sum_probs=132.2

Q ss_pred             ccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCceeecC
Q psy9266          11 NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVG   89 (157)
Q Consensus        11 ~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~~~~   89 (157)
                      +|+|+|+|++||++||+++|||||||+||       ||||.|+|+|+||||++.|.|.|+|+++|++||+| +|+|.++|
T Consensus         1 ~i~v~L~~~~lW~~f~~~~tEMIITk~GR-------rmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g   73 (188)
T cd00182           1 GIKVSLENRELWKKFHELGTEMIITKSGR-------RMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAG   73 (188)
T ss_pred             CcEEEEcCHHHHHhhcccCcEEEEecCCc-------ccccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcC
Confidence            58999999999999999999999999999       99999999999999999999999999999999999 99999999


Q ss_pred             CCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          90 DAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        90 ~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ++|++.+   .++|+|||||++|++||+++|+|+++||||+..++.++|+|+|||||+|+|+|++.|
T Consensus        74 ~~e~~~~---~~~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~  137 (188)
T cd00182          74 KAEPHLP---PRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVD  137 (188)
T ss_pred             CCCCCCC---CceEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcC
Confidence            9998766   899999999999999999999999999999998889999999999999999999875

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=100.00  E-value=6.4e-53  Score=336.38  Aligned_cols=135  Identities=37%  Similarity=0.724  Sum_probs=130.7

Q ss_pred             cEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCceeecCC
Q psy9266          12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGD   90 (157)
Q Consensus        12 i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~~~~~   90 (157)
                      |+|+|+|++||++||+++|||||||+||       ||||.|+|+|+||||++.|.|.|+|+++|++||+| +|+|.++|+
T Consensus         1 i~v~L~~~~lW~~f~~~~tEMIVTk~GR-------rmFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~   73 (190)
T smart00425        1 IKVSLEDKELWRKFHELGTEMIVTKSGR-------RMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGK   73 (190)
T ss_pred             CEEEEcCHHHHHhhCccCcEEEEecCCc-------eeCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCC
Confidence            7899999999999999999999999999       99999999999999999999999999999999999 999999999


Q ss_pred             CCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceE--EeccCCeeEEEEEEEecC
Q psy9266          91 AERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFL--EVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        91 ~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i--~L~s~hkY~PvL~i~~~~  156 (157)
                      +|++.+   .++|+||++|++|++||+++|+|+++||||+..++++.|  +|+|||||+|+|+|++.|
T Consensus        74 ~e~~~~---~~~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~  138 (190)
T smart00425       74 AEPHMP---SRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVD  138 (190)
T ss_pred             CCCCCC---CceEECCCCccCHHHHhhCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeC
Confidence            998877   899999999999999999999999999999998888887  999999999999999875

>KOG3585|consensus

Probab=100.00  E-value=3e-49  Score=337.40  Aligned_cols=144  Identities=35%  Similarity=0.673  Sum_probs=137.6

Q ss_pred             ccccCCCCccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-
Q psy9266           3 IYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-   81 (157)
Q Consensus         3 ~~~~~~~~~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-   81 (157)
                      .+.+....+|+|+|++.+||++||.++|||||||+||       ||||.|+|+|+||||++.|+|.|+|+++|++||+| 
T Consensus        16 ~~~~~~~~~~~v~l~~~eLW~~fh~~~~EmiitK~GR-------rmFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~   88 (328)
T KOG3585|consen   16 PYDMGSPIQVKVSLENRELWKKFHEHGTEMIVTKRGR-------RMFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFN   88 (328)
T ss_pred             ccccCCCcccEEEEechhHHHhhccCccEEEEecCCc-------eeccccceeeccCCcccceEEEEEEEEccCceeeec
Confidence            4566667779999999999999999999999999999       99999999999999999999999999999999999 


Q ss_pred             CCceeecCCCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCce-EEeccCCeeEEEEEEEecC
Q psy9266          82 KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRF-LEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        82 ~~~W~~~~~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~-i~L~s~hkY~PvL~i~~~~  156 (157)
                      +|+|.++|++++..+   .++++||+|++||++||+++|+|++|||||+..++++. |+|+|||||+|||+|+++|
T Consensus        89 ng~W~p~gk~e~~~~---~~~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~  161 (328)
T KOG3585|consen   89 NGKWVPSGKAEPHVP---SKVYVHPDGPATGAHWMSEPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELD  161 (328)
T ss_pred             CCeeccCCCCCCCCC---ceEEEecCCccchHHHhcCCcccceeEeeccccccCCceEeeecccceeeeEEEEEcc
Confidence            999999999999766   89999999999999999999999999999999998888 9999999999999999986

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=100.00  E-value=1.4e-49  Score=313.86  Aligned_cols=134  Identities=35%  Similarity=0.681  Sum_probs=108.0

Q ss_pred             EEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCceeecCCC
Q psy9266          13 EVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDA   91 (157)
Q Consensus        13 ~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~~~~~~   91 (157)
                      +|+|+|+++|++||+++||||||++||       +|||.|.|+|+||||++.|+|+|+|+++|+++|+| +|+|.+++++
T Consensus         1 ~V~L~~~~lW~~f~~~~~EMivt~~GR-------~~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~   73 (184)
T PF00907_consen    1 QVSLENEELWKKFHELGNEMIVTKNGR-------RMFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKA   73 (184)
T ss_dssp             EEEETTHHHHHHHHHH--EEE-BTT-E-------E-SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE-
T ss_pred             CeECccHHHHHHhccCCCEEEEeeccc-------ccccccEEEecCCCCCcceEEEEEEEEecCceeecccccccccccc
Confidence            699999999999999999999999999       99999999999999999999999999999999999 9999999998


Q ss_pred             CCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          92 ERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        92 ~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ++..+   .+.+.||+|+++|++||+++|+|+++||||+..++++.|+|+|+|||+|||+||+.+
T Consensus        74 ~~~~~---~~~~~h~~~~~~G~~WM~~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~  135 (184)
T PF00907_consen   74 EPPMP---PRVVIHPDGPQTGSEWMKNGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVN  135 (184)
T ss_dssp             --B--------EE-TT-SEEHHHHHHS-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECT
T ss_pred             ccccc---ceEEEEecCcCCHHHhCcccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcC
Confidence            87666   789999999999999999999999999999998777889999999999999999875

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

>KOG3586|consensus

Probab=100.00  E-value=3e-49  Score=338.77  Aligned_cols=138  Identities=34%  Similarity=0.675  Sum_probs=135.1

Q ss_pred             CCccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee---CCce
Q psy9266           9 FSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY---KTSW   85 (157)
Q Consensus         9 ~~~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~---~~~W   85 (157)
                      ...|+|.|+.++||++||++||||||||+||       ||||.++.+|+||||.+.|.|.++|+++|++||||   +..|
T Consensus        77 ~a~i~~~Le~keLWdrFh~lGTEMIITKsGR-------RMFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~W  149 (437)
T KOG3586|consen   77 LAPIQVQLETKELWDRFHDLGTEMIITKSGR-------RMFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSW  149 (437)
T ss_pred             ccceEEEeehHHHHHHHHhcCceEEEecccc-------cccceEEEEEecCCcccceEEEEeEEecccceeeeeecccce
Confidence            6689999999999999999999999999999       99999999999999999999999999999999998   8899


Q ss_pred             eecCCCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          86 EPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ..+|++|+..|   +|+|+|||+|.+|+.||++.|+|+|+|||||+.+++|+|+|+|||||+|+++|++.|
T Consensus       150 lvAGkADp~~p---~R~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~  217 (437)
T KOG3586|consen  150 LVAGKADPAPP---PRVYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLD  217 (437)
T ss_pred             eeecCCCCCCC---CceeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEec
Confidence            99999999988   899999999999999999999999999999999999999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
2x6u_A	203	Crystal Structure Of Human Tbx5 In The Dna-Free For		1e-17
1xbr_A	184	T Domain From Xenopus Laevis Bound To Dna Length =		4e-16
1h6f_A	193	Human Tbx3, A Transcription Factor Responsible For		4e-16
4a04_A	203	Structure Of The Dna-Bound T-Box Domain Of Human Tb		1e-15

>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 12  VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
           ++V L   +LW  FH +GTEMIITK GR       RMFPS +++V+GL+    Y LL++ 
Sbjct: 6   IKVFLHERELWLKFHEVGTEMIITKAGR-------RMFPSYKVKVTGLNPKTKYILLMDI 58
Query: 72  HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
             A  H+YK+    W   G AE  +     RLY HP   A G+ W  Q +   K+KL N
Sbjct: 59  VPADDHRYKFADNKWSVTGKAEPAM---PGRLYVHPDSPATGAHWMRQLVSFQKLKLTN 114

>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 12  VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
           ++V+L   DLW  F  +  EMI+TK GR       RMFP L++ +SGLD  A Y++L++F
Sbjct: 2   LKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDF 54
Query: 72  HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANA 130
             A  H++KY    W P G   +P     + +Y HP     G+ W    +  +K+KL N 
Sbjct: 55  VAADNHRWKYVNGEWVPGG---KPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNK 111
Query: 131 FVEGTRFL 138
              G + +
Sbjct: 112 MNGGGQIM 119

>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 11/118 (9%)
Query: 13  EVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFH 72
           +V L   +LW  FH  GTEM+ITK+GR       RMFP  +++ SGLD+ A Y LL++  
Sbjct: 6   KVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLMDII 58
Query: 73  LASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
            A   +YK+  S W   G A+  +     R+Y HP   A G  W  + +  +K+KL N
Sbjct: 59  AADDCRYKFHNSRWMVAGKADPEM---PKRMYIHPDSPATGEQWMSKVVTFHKLKLTN 113

>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 17/127 (13%)
Query: 12  VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
           V V L    LW  F+ +GTEMI+TK GR       RMFP+ Q+++ G+D  A Y LL++F
Sbjct: 16  VSVQLEMKALWDEFNQLGTEMIVTKAGR-------RMFPTFQVKLFGMDPMADYMLLMDF 68
Query: 72  HLASPHKYKY---KTSWEPVGDAERPIAHPA--ARLYSHPAGHALGSFWTGQTLHLNKIK 126
                 +Y+Y    +SW   G A+     PA   R++ HP   A G+ W  Q +  +K+K
Sbjct: 69  VPVDDKRYRYAFHSSSWLVAGKAD-----PATPGRVHYHPDSPAKGAQWMKQIVSFDKLK 123
Query: 127 LANAFVE 133
           L N  ++
Sbjct: 124 LTNNLLD 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
2x6u_A	203	T-box transcription factor TBX5; developmental pro	3e-29
1xbr_A	184	Protein (T protein); complex (transcription factor	6e-27
4a04_A	203	T-box transcription factor TBX1; transcription, T-	1e-25
1h6f_A	193	T-box transcription factor TBX3; transcription fac	4e-25

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score =  105 bits (262), Expect = 3e-29
 Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 11/121 (9%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
             ++V L   +LW  FH +GTEMIITK GR       RMFPS +++V+GL+    Y LL+
Sbjct: 4   EGIKVFLHERELWLKFHEVGTEMIITKAGR-------RMFPSYKVKVTGLNPKTKYILLM 56

Query: 70  EFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
           +   A  H+YK+  + W   G AE        RLY HP   A G+ W  Q +   K+KL 
Sbjct: 57  DIVPADDHRYKFADNKWSVTGKAE---PAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLT 113

Query: 129 N 129
           N
Sbjct: 114 N 114

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score = 98.6 bits (245), Expect = 6e-27
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 12  VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
           ++V+L   DLW  F  +  EMI+TK GR       RMFP L++ +SGLD  A Y++L++F
Sbjct: 2   LKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDF 54

Query: 72  HLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
             A  H++KY    W P G  E       + +Y HP     G+ W    +  +K+KL N
Sbjct: 55  VAADNHRWKYVNGEWVPGGKPE---PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTN 110

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score = 96.1 bits (238), Expect = 1e-25
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
             V V L    LW  F+ +GTEMI+TK GR       RMFP+ Q+++ G+D  A Y LL+
Sbjct: 14  GGVSVQLEMKALWDEFNQLGTEMIVTKAGR-------RMFPTFQVKLFGMDPMADYMLLM 66

Query: 70  EFHLASPHKYKYKT---SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIK 126
           +F      +Y+Y     SW   G A+        R++ HP   A G+ W  Q +  +K+K
Sbjct: 67  DFVPVDDKRYRYAFHSSSWLVAGKAD---PATPGRVHYHPDSPAKGAQWMKQIVSFDKLK 123

Query: 127 LANAFVEGTRFLEVRHLLLIYPQCGQI 153
           L N  ++    + + + +  Y     +
Sbjct: 124 LTNNLLDDNGHIIL-NSMHRYQPRFHV 149

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score = 94.5 bits (234), Expect = 4e-25
 Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 11/121 (9%)

Query: 10  SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
            + +V L   +LW  FH  GTEM+ITK+GR       RMFP  +++ SGLD+ A Y LL+
Sbjct: 3   DDPKVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLM 55

Query: 70  EFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
           +   A   +YK+  S W   G A+        R+Y HP   A G  W  + +  +K+KL 
Sbjct: 56  DIIAADDCRYKFHNSRWMVAGKAD---PEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLT 112

Query: 129 N 129
           N
Sbjct: 113 N 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
2x6u_A	203	T-box transcription factor TBX5; developmental pro	100.0
1h6f_A	193	T-box transcription factor TBX3; transcription fac	100.0
1xbr_A	184	Protein (T protein); complex (transcription factor	100.0
4a04_A	203	T-box transcription factor TBX1; transcription, T-	100.0

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=100.00  E-value=4e-55  Score=350.99  Aligned_cols=139  Identities=36%  Similarity=0.705  Sum_probs=131.3

Q ss_pred             CCCccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCcee
Q psy9266           8 DFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWE   86 (157)
Q Consensus         8 ~~~~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~   86 (157)
                      ..++|+|+|+|++||++||+++|||||||+||       ||||.|+|+|+||||++.|.|.|+|+++|++|||| +|+|.
T Consensus         2 ~~~~i~V~L~~~~LW~~F~~~~tEMIiTk~GR-------rmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~   74 (203)
T 2x6u_A            2 AMEGIKVFLHERELWLKFHEVGTEMIITKAGR-------RMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWS   74 (203)
T ss_dssp             --CCCEEEETTHHHHHHHHHHCCEEECBSSCE-------ECSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEE
T ss_pred             CcCCCEEEECCHHHHHhcCcCCceEEEecCCc-------ccCceeEEEEeCCCcccCeEEEEEEEEccCceeEEeCCcEe
Confidence            46789999999999999999999999999999       99999999999999999999999999999999999 99999


Q ss_pred             ecCCCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          87 PVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ++|++|+..|   .++|+|||||++|++||+++|+|+++||||+..++.++|+|+|||||+|+|+|++.|
T Consensus        75 ~~gkae~~~p---~r~y~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~  141 (203)
T 2x6u_A           75 VTGKAEPAMP---GRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKAD  141 (203)
T ss_dssp             EEEECCCC------CCEECTTCSEEHHHHHHSCEECTTCEEECCTTCSSCCEECCTTEEEEEEEEEEECC
T ss_pred             ECcccCCCCC---cceEECCCCccchHHHhhCCceeeeeeceeccCCccceEeecCCceEEEEEEEEEeC
Confidence            9999998877   799999999999999999999999999999988888999999999999999999875

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=100.00  E-value=6.4e-55  Score=347.46  Aligned_cols=137  Identities=34%  Similarity=0.679  Sum_probs=132.7

Q ss_pred             CccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCceeec
Q psy9266          10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPV   88 (157)
Q Consensus        10 ~~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~~~   88 (157)
                      .+|+|+|+|++||++||+++|||||||+||       ||||.|+|+|+||||++.|.|.|+|+++|++||+| +|+|.++
T Consensus         3 ~~i~V~L~~~~LW~~F~~~~tEMIiTk~GR-------rmFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~   75 (193)
T 1h6f_A            3 DDPKVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVA   75 (193)
T ss_dssp             -CCEEEETTHHHHHHHHHHCCEEECCTTCB-------CCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred             CCCEEEECCHHHHHhhCcccceEEEecCCc-------ccCceeEEEEeCCCcccceEEEEEEEEccCceeeccCCcEEEC
Confidence            589999999999999999999999999999       99999999999999999999999999999999999 9999999


Q ss_pred             CCCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          89 GDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        89 ~~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      |++++..|   .++|+|||||++|++||+++|+|++|||||+..+++++|+|+|||||+|+|+|++.|
T Consensus        76 gkae~~~p---~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~  140 (193)
T 1h6f_A           76 GKADPEMP---KRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAN  140 (193)
T ss_dssp             EECCCCCC---CCCEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCS
T ss_pred             cccCCCCC---cceEecCCCcccHHHHhhCCcceeeeeeeccCCCCCCcEEecCCceEeeEEEEEEcC
Confidence            99998887   899999999999999999999999999999998888999999999999999999865

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=100.00  E-value=1.3e-54  Score=343.55  Aligned_cols=135  Identities=34%  Similarity=0.686  Sum_probs=130.2

Q ss_pred             ccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCceeecC
Q psy9266          11 NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVG   89 (157)
Q Consensus        11 ~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~~~~   89 (157)
                      +|+|+|+|++||++||+++|||||||+||       ||||.|+|+|+||||++.|.|.|+|+++|++|||| +|+|.++|
T Consensus         1 ~i~V~L~~~~LW~~F~~~~tEMIiTk~GR-------rmFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~g   73 (184)
T 1xbr_A            1 ELKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGG   73 (184)
T ss_dssp             CCEEEETTHHHHHHHHHHCCEEECBTTCE-------ECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEES
T ss_pred             CCEEEEcCHHHHHhhcccCcEEEEecCCc-------ccCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcC
Confidence            58999999999999999999999999999       99999999999999999999999999999999999 99999999


Q ss_pred             CCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          90 DAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        90 ~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ++|++.|   .++|+|||||++|++||+++|+|+++||||+. +..++|+|+|||||+|+|+|++.|
T Consensus        74 kae~~~p---~r~~~Hpdsp~~G~~WM~~~VsF~klKlTNn~-~~~~~i~L~SmHKY~PrlhI~~~~  136 (184)
T 1xbr_A           74 KPEPQAP---SCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKM-NGGGQIMLNSLHKYEPRIHIVRVG  136 (184)
T ss_dssp             SCCCCCC---CCCEECTTCSEEHHHHHHSCEECTTCEEESSC-CTTTCEECCSSSEEEEEEEEEEES
T ss_pred             ccCCCCC---cceEECCCCchhHHHHhhCCceeccccccccC-CCCCeEEeccCceEEEEEEEEEeC
Confidence            9998877   79999999999999999999999999999995 567899999999999999999865

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=100.00  E-value=3.9e-54  Score=345.26  Aligned_cols=137  Identities=34%  Similarity=0.654  Sum_probs=132.0

Q ss_pred             CccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee---CCcee
Q psy9266          10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY---KTSWE   86 (157)
Q Consensus        10 ~~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~---~~~W~   86 (157)
                      ++|+|+|+|++||++||++||||||||+||       ||||.|+|+|+||||++.|.|.|+|+++|++||||   +|+|.
T Consensus        14 ~~i~V~Le~~~LW~~Fh~~~tEMIITK~GR-------rmFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~   86 (203)
T 4a04_A           14 GGVSVQLEMKALWDEFNQLGTEMIVTKAGR-------RMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWL   86 (203)
T ss_dssp             -CCEEEETTHHHHHHHHHHCCEEECCSSCE-------ECSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEE
T ss_pred             CCcEEEeCCHHHHHhhCcCCCeEEEEeCCc-------ccCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEe
Confidence            689999999999999999999999999999       99999999999999999999999999999999996   89999


Q ss_pred             ecCCCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          87 PVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ++|++++..|   .++|+|||||++|++||+++|+|+++||||+..++++.|+|+|||||+|+|+|++.|
T Consensus        87 ~~gkae~~~p---~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~  153 (203)
T 4a04_A           87 VAGKADPATP---GRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVD  153 (203)
T ss_dssp             EEEECCCCCC---CCCCBCTTCSEEHHHHHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEEEEEECC
T ss_pred             ECCccCCCCC---CceEEcCCCCcCHHHHhhCcceeeeeecccCccCcCCEEEEeeccccccEEEEEEcC
Confidence            9999998877   799999999999999999999999999999998889999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	2e-39
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	3e-36

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  129 bits (325), Expect = 2e-39
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 12  VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
           ++V+L   DLW  F  +  EMI+TK GR       RMFP L++ +SGLD  A Y++L++F
Sbjct: 2   LKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDF 54

Query: 72  HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
             A  H++KY    W P G  E       + +Y HP     G+ W    +  +K+KL N
Sbjct: 55  VAADNHRWKYVNGEWVPGGKPE---PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTN 110

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-36
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
           + +V L   +LW  FH  GTEM+ITK+GR       RMFP  +++ SGLD+ A Y LL++
Sbjct: 1   DPKVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLMD 53

Query: 71  FHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
              A   +YK+  + W   G A+        R+Y HP   A G  W  + +  +K+KL N
Sbjct: 54  IIAADDCRYKFHNSRWMVAGKAD---PEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTN 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1xbra_	184	T domain from Brachyury transcription factor {Afri	100.0
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	85.16

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-55  Score=343.08  Aligned_cols=136  Identities=34%  Similarity=0.683  Sum_probs=132.2

Q ss_pred             ccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCceeecC
Q psy9266          11 NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVG   89 (157)
Q Consensus        11 ~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~~~~   89 (157)
                      .++|+|+|++||++||++||||||||+||       ||||.|+|+|+||||++.|.|.|+|+++|++||+| +|+|.++|
T Consensus         1 ~~~V~L~~~~lW~~F~~~~tEMIvTk~GR-------rmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~g   73 (184)
T d1h6fa_           1 DPKVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAG   73 (184)
T ss_dssp             CCEEEETTHHHHHHHHHHCCEEECCTTCB-------CCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             CCEEEECCHHHHHHhccCCCEEEEecCCc-------ccCceeEEEEeccCCCcceEEEEEEEECcCCeeeEeCCcEEEcc
Confidence            47999999999999999999999999999       99999999999999999999999999999999999 99999999


Q ss_pred             CCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          90 DAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        90 ~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ++++..+   .++|+||+||.+|++||+++|+|+++||||+..++++.|+|+|||||+|+|+|+++|
T Consensus        74 ~~e~~~~---~~~~~Hpdsp~tG~~WM~~~i~F~k~KltN~~~~~~~~i~L~SmhKYqPrl~I~~~~  137 (184)
T d1h6fa_          74 KADPEMP---KRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAN  137 (184)
T ss_dssp             ECCCCCC---CCCEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCS
T ss_pred             cCCCCCC---CceEECCCCCcCHHHHHhCccccchhhhcCCccCcccchhHhhcccCCCeEEEEEeC
Confidence            9998777   899999999999999999999999999999998999999999999999999999976

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1.5e-54  Score=341.11  Aligned_cols=135  Identities=34%  Similarity=0.686  Sum_probs=130.1

Q ss_pred             ccEEEEeChhhhhhhhcCCceeEEEecCccccCCccCCCceeEEEEecCCCCCCeeEEEEEEEccCceeee-CCceeecC
Q psy9266          11 NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVG   89 (157)
Q Consensus        11 ~i~V~L~n~~lW~~F~~~~~EMivtk~GR~~~~~~~r~fP~l~~~v~GLdp~~~Y~v~l~~~~~d~~~yk~-~~~W~~~~   89 (157)
                      .|+|+|+|++||++||+++|||||||+||       ||||.|+|+|+||||++.|.+.|+|+++|++||+| +++|.++|
T Consensus         1 ~i~v~L~~~~LW~~F~~~~tEMIITk~GR-------rmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~ryky~~~~W~~~g   73 (184)
T d1xbra_           1 ELKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGG   73 (184)
T ss_dssp             CCEEEETTHHHHHHHHHHCCEEECBTTCE-------ECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEES
T ss_pred             CeEEEecCHHHHHHhccCCCEEEEecCCc-------ccCCceEEEEECCCcCccEEEEEEEEEccCcEEEEECCcEEECC
Confidence            48999999999999999999999999999       99999999999999999999999999999999999 99999999


Q ss_pred             CCCCCCCCCCCceEEcCCCCCcchhhhcCceeeeEEeeeecccCCCceEEeccCCeeEEEEEEEecC
Q psy9266          90 DAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEVRHLLLIYPQCGQIQSD  156 (157)
Q Consensus        90 ~~~~~~~~~~~~~~~Hp~~~~~G~~Wm~~~v~F~~vkitn~~~~~~~~i~L~s~hkY~PvL~i~~~~  156 (157)
                      ++++..+   .++|+|||||++|++||+++|+|+++||||+. ++.+.|+|+|||||+|+|+|++.|
T Consensus        74 ~~e~~~~---~~~~~Hpdsp~tG~~WM~~~i~F~klKlTN~~-~~~~~i~L~SmHKYqPrl~I~~~~  136 (184)
T d1xbra_          74 KPEPQAP---SCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKM-NGGGQIMLNSLHKYEPRIHIVRVG  136 (184)
T ss_dssp             SCCCCCC---CCCEECTTCSEEHHHHHHSCEECTTCEEESSC-CTTTCEECCSSSEEEEEEEEEEES
T ss_pred             ccCCCCC---CceEECCCCCcCHHHHhhCccccceeeeeccC-CCCCceEEecccceeeeEEEEEeC
Confidence            9998777   89999999999999999999999999999984 678999999999999999999975

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.55  Score=29.21  Aligned_cols=22  Identities=18%  Similarity=0.076  Sum_probs=19.0

Q ss_pred             eeEEEEecCCCCCCeeEEEEEE
Q psy9266          51 SLQLQVSGLDQAAHYSLLVEFH   72 (157)
Q Consensus        51 ~l~~~v~GLdp~~~Y~v~l~~~   72 (157)
                      ...+.|.||.|...|.+.|.-.
T Consensus        64 ~~~~~v~~L~p~t~Y~~~V~a~   85 (101)
T d2cuia1          64 RHSAVLRDLRSGTLYSLTLYGL   85 (101)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEE
T ss_pred             eeEEEeCCCCcCCEEEEEEEEE
Confidence            3689999999999999999743