Psyllid ID: psy929

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MDSFSPHNISRFSLTNDTSPQTHSPEVCMDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLGTVSKSRPKSYEWDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLCQLTPTTK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccEEEEEEEccEEEEccHHHHHHHHccccccccccccccccHHHHEEEEccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccEEEEEHHcccccccccccEEEEEccccccccccccccEEEEEEEEEccccc
cccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEcHHHccccccccccccEEEEEcccccEEEcccccEEEEEEEEccccccc
mdsfsphnisrfsltndtspqthspevcmdsfsphnisrfsltndtspasfhnytrlgllshspyspLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAItkpleygvkrtpkRMILCVVFVWLGaacislpplivlgndyredngvsfCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLqihnnsspatnsnrghthrtsttstnttgrwkpggcrkwlrtqdRVQCKRKNKANKYQEIQEsldldctseyFTRTLEVNDFQLNLKRARRKALLFVSLSqlgtvsksrpksyewdlcekvvpslkgyeQNFVGTFRElgglvsgirdnrrfdEIFHqkfvssvfpneklpdfwlclfpmlpvvastsprVARCIVLcqltpttk
mdsfsphnisrfsltndtspqtHSPEVCMDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPleygvkrtpkRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSspatnsnrghthrtsttstnttgrwkpggcrkwlrtqdrvqckrknkankyqeiqesldldCTSEYFTRTLEVNDFQLNLKRARRKALLfvslsqlgtvsksrpksyewDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLcqltpttk
MDSFSPHNISRFSLTNDTSPQTHSPEVCMDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQAliiglilliiiivtivgnilvCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNsnrghthrtsttstnttgrWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNlkrarrkallFVSLSQLGTVSKSRPKSYEWDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLCQLTPTTK
*************************************************SFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIH*******************************GCRKWLRTQDRVQCK******KYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLGTVSKSRPKSYEWDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLCQL*****
********ISRF*********************PHNISRFSLTN***************LSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIV**************************************************GGCR**************NKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLGTVSKSRPKSYEWDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLCQLTP***
MDSFSPHNISRFSLTNDTSPQTHSPEVCMDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSS***********************WKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLG*********YEWDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLCQLTPTTK
**************************************************************SPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRA*************************************************WLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLGTVSKSRPKSYEWDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLCQLT****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDSFSPHNISRFSLTNDTSPQTHSPEVCMDSFSPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRARRKALLFVSLSQLGTVSKSRPKSYEWDLCEKVVPSLKGYEQNFVGTFRELGGLVSGIRDNRRFDEIFHQKFVSSVFPNEKLPDFWLCLFPMLPVVASTSPRVARCIVLCQLTPTTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
P20905564 5-hydroxytryptamine recep yes N/A 0.424 0.363 0.736 1e-89
P22270601 Tyramine/octopamine recep no N/A 0.474 0.381 0.450 7e-47
Q91559425 5-hydroxytryptamine recep N/A N/A 0.409 0.465 0.477 8e-47
P32304448 5-hydroxytryptamine recep yes N/A 0.505 0.544 0.427 3e-45
P32305448 5-hydroxytryptamine recep yes N/A 0.505 0.544 0.427 4e-45
P34969479 5-hydroxytryptamine recep yes N/A 0.503 0.507 0.426 6e-45
Q25322484 Putative tyramine recepto N/A N/A 0.484 0.483 0.402 7e-45
Q25321484 Tyramine receptor 1 OS=Lo N/A N/A 0.484 0.483 0.402 7e-45
P50407446 5-hydroxytryptamine recep yes N/A 0.409 0.443 0.465 3e-43
Q9N296422 5-hydroxytryptamine recep N/A N/A 0.559 0.639 0.375 9e-43
>sp|P20905|5HT1R_DROME 5-hydroxytryptamine receptor 1 OS=Drosophila melanogaster GN=5-HT7 PE=2 SV=1 Back     alignment and function desciption
 Score =  330 bits (847), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 183/205 (89%)

Query: 67  PLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPM 126
           PL ++ + ++LLI+I+ T+VGN+LVCIAVC+VRKLRRPCNYLLVSLA+SDLCVA+LVMPM
Sbjct: 159 PLTSIFVSIVLLIVILGTVVGNVLVCIAVCMVRKLRRPCNYLLVSLALSDLCVALLVMPM 218

Query: 127 ALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKR 186
           ALLYEV  KWNFG ++C++WVSFDVL CTASILNLC ISVDRY AITKPLEYGVKRTP+R
Sbjct: 219 ALLYEVLEKWNFGPLLCDIWVSFDVLCCTASILNLCAISVDRYLAITKPLEYGVKRTPRR 278

Query: 187 MILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVM 246
           M+LCV  VWL AACISLPPL++LGN++ ++ G   C+VCQN+ YQIYATLGSFYIPL+VM
Sbjct: 279 MMLCVGIVWLAAACISLPPLLILGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVM 338

Query: 247 ITVYYKIFCAARKIVAEEKRAQSHI 271
           + VYY+IF AAR+IV EEKRAQ+H+
Sbjct: 339 LFVYYQIFRAARRIVLEEKRAQTHL 363
This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.
Drosophila melanogaster (taxid: 7227)
>sp|P22270|OAR_DROME Tyramine/octopamine receptor OS=Drosophila melanogaster GN=Oct-TyrR PE=2 SV=2 Back     alignment and function description
>sp|Q91559|5HT7R_XENLA 5-hydroxytryptamine receptor 7 OS=Xenopus laevis GN=htr7 PE=2 SV=1 Back     alignment and function description
>sp|P32304|5HT7R_MOUSE 5-hydroxytryptamine receptor 7 OS=Mus musculus GN=Htr7 PE=2 SV=2 Back     alignment and function description
>sp|P32305|5HT7R_RAT 5-hydroxytryptamine receptor 7 OS=Rattus norvegicus GN=Htr7 PE=2 SV=2 Back     alignment and function description
>sp|P34969|5HT7R_HUMAN 5-hydroxytryptamine receptor 7 OS=Homo sapiens GN=HTR7 PE=1 SV=2 Back     alignment and function description
>sp|Q25322|OAR2_LOCMI Putative tyramine receptor 2 OS=Locusta migratoria GN=GCR2 PE=2 SV=1 Back     alignment and function description
>sp|Q25321|OAR1_LOCMI Tyramine receptor 1 OS=Locusta migratoria GN=GCR1 PE=1 SV=1 Back     alignment and function description
>sp|P50407|5HT7R_CAVPO 5-hydroxytryptamine receptor 7 OS=Cavia porcellus GN=HTR7 PE=2 SV=1 Back     alignment and function description
>sp|Q9N296|5HT1A_PONPY 5-hydroxytryptamine receptor 1A OS=Pongo pygmaeus GN=HTR1A PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
345479387541 PREDICTED: 5-hydroxytryptamine receptor 0.536 0.478 0.638 1e-91
380011233504 PREDICTED: LOW QUALITY PROTEIN: 5-hydrox 0.536 0.513 0.642 3e-91
118150508501 serotonin receptor 7 [Apis mellifera] gi 0.536 0.516 0.628 3e-91
383860442505 PREDICTED: 5-hydroxytryptamine receptor 0.554 0.530 0.604 1e-90
198449433573 GA11376 [Drosophila pseudoobscura pseudo 0.501 0.422 0.642 2e-90
195159069 592 GL13974 [Drosophila persimilis] gi|19411 0.501 0.408 0.642 2e-90
350426106294 PREDICTED: 5-hydroxytryptamine receptor 0.501 0.823 0.657 7e-90
195452844556 GK13099 [Drosophila willistoni] gi|19416 0.488 0.424 0.657 3e-89
194765079528 GF23300 [Drosophila ananassae] gi|190614 0.424 0.388 0.741 4e-88
307212574308 5-hydroxytryptamine receptor 1 [Harpegna 0.498 0.782 0.633 5e-88
>gi|345479387|ref|XP_001606275.2| PREDICTED: 5-hydroxytryptamine receptor 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/277 (63%), Positives = 215/277 (77%), Gaps = 18/277 (6%)

Query: 62  HSPYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAI 121
           +SPY+  +A+++ L+L  III T++GNILVC+AV +V+KLR+PCNYLLVSLAVSD+CVA+
Sbjct: 43  NSPYTTTRAILLALVLGSIIIGTVIGNILVCVAVFLVKKLRKPCNYLLVSLAVSDICVAL 102

Query: 122 LVMPMALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVK 181
           LVMPMA+L+E+ G W+FG  MC +WVSFDVLSCTASILNLCMISVDRYYAI+KPL+YGVK
Sbjct: 103 LVMPMAMLFEIKGSWSFGPTMCEIWVSFDVLSCTASILNLCMISVDRYYAISKPLDYGVK 162

Query: 182 RTPKRMILCVVFVWLGAACISLPPLIVLGNDYRE-DNGVSFCSVCQNYGYQIYATLGSFY 240
           RT +RMI+ V FVWLGAACISLPPL+VLGN+Y E ++G+S CSVCQN+GYQIYATLGSFY
Sbjct: 163 RTTRRMIIYVAFVWLGAACISLPPLLVLGNEYTETEDGLSHCSVCQNFGYQIYATLGSFY 222

Query: 241 IPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHN-----------NSSPATN 289
           IPL VMI VYYKIFCAARKIV EEKRAQSH +  +C+L I             NS   TN
Sbjct: 223 IPLFVMILVYYKIFCAARKIVLEEKRAQSH-LEAYCHLDIEQQLPAPILHPKANSDGQTN 281

Query: 290 SNRGHT--HRTSTTSTNTT---GRWKPGGCRKWLRTQ 321
                T  HR+S+ ST  +    +   GG RK   +Q
Sbjct: 282 RVTSPTEHHRSSSASTTCSVHAVKCFAGGPRKSNESQ 318

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380011233|ref|XP_003689715.1| PREDICTED: LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 1-like [Apis florea] Back     alignment and taxonomy information
>gi|118150508|ref|NP_001071289.1| serotonin receptor 7 [Apis mellifera] gi|112807683|emb|CAJ28210.1| serotonin receptor [Apis mellifera] Back     alignment and taxonomy information
>gi|383860442|ref|XP_003705698.1| PREDICTED: 5-hydroxytryptamine receptor 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|198449433|ref|XP_001357582.2| GA11376 [Drosophila pseudoobscura pseudoobscura] gi|198130604|gb|EAL26716.2| GA11376 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195159069|ref|XP_002020405.1| GL13974 [Drosophila persimilis] gi|194117174|gb|EDW39217.1| GL13974 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|350426106|ref|XP_003494336.1| PREDICTED: 5-hydroxytryptamine receptor 1-like, partial [Bombus impatiens] Back     alignment and taxonomy information
>gi|195452844|ref|XP_002073525.1| GK13099 [Drosophila willistoni] gi|194169610|gb|EDW84511.1| GK13099 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194765079|ref|XP_001964655.1| GF23300 [Drosophila ananassae] gi|190614927|gb|EDV30451.1| GF23300 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|307212574|gb|EFN88289.1| 5-hydroxytryptamine receptor 1 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
FB|FBgn0004573564 5-HT7 "Serotonin receptor 7" [ 0.372 0.319 0.772 1e-75
ZFIN|ZDB-GENE-091118-105369 si:dkeyp-66d7.5 "si:dkeyp-66d7 0.339 0.444 0.488 2.2e-42
MGI|MGI:99841448 Htr7 "5-hydroxytryptamine (ser 0.503 0.542 0.385 1.1e-41
RGD|71034448 Htr7 "5-hydroxytryptamine (ser 0.503 0.542 0.385 1.4e-41
UNIPROTKB|F1LQK9470 Htr7 "5-hydroxytryptamine rece 0.503 0.517 0.385 1.4e-41
UNIPROTKB|F1PTX6482 HTR7 "Uncharacterized protein" 0.351 0.352 0.477 2.2e-41
UNIPROTKB|J9NRM2448 HTR7 "Uncharacterized protein" 0.351 0.379 0.477 2.2e-41
UNIPROTKB|P34969479 HTR7 "5-hydroxytryptamine rece 0.351 0.354 0.477 2.2e-41
UNIPROTKB|Q5VX04479 HTR7 "5-hydroxytryptamine rece 0.351 0.354 0.477 2.2e-41
UNIPROTKB|F1SCX6448 HTR7 "Uncharacterized protein" 0.351 0.379 0.477 2.2e-41
FB|FBgn0004573 5-HT7 "Serotonin receptor 7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 139/180 (77%), Positives = 162/180 (90%)

Query:    92 CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDV 151
             CIAVC+VRKLRRPCNYLLVSLA+SDLCVA+LVMPMALLYEV  KWNFG ++C++WVSFDV
Sbjct:   184 CIAVCMVRKLRRPCNYLLVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVSFDV 243

Query:   152 LSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGN 211
             L CTASILNLC ISVDRY AITKPLEYGVKRTP+RM+LCV  VWL AACISLPPL++LGN
Sbjct:   244 LCCTASILNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLILGN 303

Query:   212 DYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHI 271
             ++ ++ G   C+VCQN+ YQIYATLGSFYIPL+VM+ VYY+IF AAR+IV EEKRAQ+H+
Sbjct:   304 EHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAARRIVLEEKRAQTHL 363
GO:0007210 "serotonin receptor signaling pathway" evidence=ISS
GO:0004993 "serotonin receptor activity" evidence=ISS;NAS;TAS
GO:0005886 "plasma membrane" evidence=ISS
GO:0005887 "integral to plasma membrane" evidence=NAS
GO:0007192 "adenylate cyclase-activating serotonin receptor signaling pathway" evidence=NAS;TAS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS
GO:0004952 "dopamine neurotransmitter receptor activity" evidence=IEA
GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP
GO:0060180 "female mating behavior" evidence=IMP
GO:0016546 "male courtship behavior, proboscis-mediated licking" evidence=IMP
GO:0060179 "male mating behavior" evidence=IMP
GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=IMP
GO:0007619 "courtship behavior" evidence=IMP
ZFIN|ZDB-GENE-091118-105 si:dkeyp-66d7.5 "si:dkeyp-66d7.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:99841 Htr7 "5-hydroxytryptamine (serotonin) receptor 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|71034 Htr7 "5-hydroxytryptamine (serotonin) receptor 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQK9 Htr7 "5-hydroxytryptamine receptor 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PTX6 HTR7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRM2 HTR7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P34969 HTR7 "5-hydroxytryptamine receptor 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VX04 HTR7 "5-hydroxytryptamine receptor 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCX6 HTR7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P209055HT1R_DROMENo assigned EC number0.73650.42440.3634yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 4e-51
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 2e-14
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 1e-06
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 2e-06
pfam10320257 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR 2e-05
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  173 bits (441), Expect = 4e-51
 Identities = 64/182 (35%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 93  IAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVL 152
           + +   +KLR P N  L++LAV+DL   + + P AL Y V G W FG  +C L     V+
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 153 SCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGND 212
           +  ASIL L  IS+DRY AI  PL Y   RTP+R  + ++ VW+ A  +SLPPL+     
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

Query: 213 YREDNGVSFCSVC-----QNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRA 267
             E+  V+ C +          Y + +TL  F +PL V++  Y  I    RK        
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180

Query: 268 QS 269
             
Sbjct: 181 AR 182

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
KOG4220|consensus503 99.98
PHA02834323 chemokine receptor-like protein; Provisional 99.97
PHA02638417 CC chemokine receptor-like protein; Provisional 99.97
PHA03235409 DNA packaging protein UL33; Provisional 99.97
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.96
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.95
KOG2087|consensus363 99.83
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.75
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.54
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.36
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.14
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.13
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.08
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.81
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.43
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.4
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.23
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.22
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.08
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.9
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.88
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 97.82
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.74
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 97.51
KOG4193|consensus610 97.31
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 96.97
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 96.9
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 96.49
KOG4564|consensus473 96.29
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 95.82
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 95.4
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 95.38
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 94.92
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 94.91
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 93.69
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 92.9
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 92.82
PHA03234338 DNA packaging protein UL33; Provisional 91.22
PHA03235409 DNA packaging protein UL33; Provisional 89.64
PHA02638417 CC chemokine receptor-like protein; Provisional 86.03
KOG4219|consensus423 84.24
PF13853144 7tm_4: Olfactory receptor 81.48
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.6e-37  Score=295.43  Aligned_cols=269  Identities=22%  Similarity=0.342  Sum_probs=221.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhH
Q psy929           64 PYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMC  143 (483)
Q Consensus        64 ~~~~~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C  143 (483)
                      ..+..+..+.+++|.++.+++++||++|++++..+|++|+.+|+|++|||+||++.+++..++...+....+|.+|..+|
T Consensus        29 ~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C  108 (423)
T KOG4219|consen   29 VLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYC  108 (423)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccccccee
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCC---Ccc
Q psy929          144 NLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDN---GVS  220 (483)
Q Consensus       144 ~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~---~~~  220 (483)
                      ++..|+......+|+++|++||+|||+||.||++-+  .+++.++.+++++|++|+++++|..+.......+..   ...
T Consensus       109 ~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~  186 (423)
T KOG4219|consen  109 RFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRV  186 (423)
T ss_pred             eeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceE
Confidence            999999999999999999999999999999999854  899999999999999999999999776653332221   122


Q ss_pred             ccccccc-------------chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCC
Q psy929          221 FCSVCQN-------------YGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPA  287 (483)
Q Consensus       221 ~C~~~~~-------------~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (483)
                      .|...+.             ..|...+.++.|++|++++.++|..|.+++|+.+.....+.                   
T Consensus       187 ~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-------------------  247 (423)
T KOG4219|consen  187 VCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-------------------  247 (423)
T ss_pred             EEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-------------------
Confidence            3322211             12677778888999999999999999999997531110000                   


Q ss_pred             CCCCCCccccccccccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhhhhhhHHHHHHh
Q psy929          288 TNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLEVNDFQLNLKRA  367 (483)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~~~~f~~~~~~~  367 (483)
                                                       .+...-+.++|+.||++++++.|.+||+||-++.++ ......+...
T Consensus       248 ---------------------------------~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il-~~~~~~i~~~  293 (423)
T KOG4219|consen  248 ---------------------------------RKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFIL-NATNPEINRK  293 (423)
T ss_pred             ---------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH-HHhHHHHHHH
Confidence                                             112456667889999999999999999999999888 4455555555


Q ss_pred             hhhhhheeeeeeccccccCC
Q psy929          368 RRKALLFVSLSQLGTVSKSR  387 (483)
Q Consensus       368 ~~~~~~~~~~~~~~~~ss~~  387 (483)
                      -+....+...-|+.+.|+.-
T Consensus       294 k~i~~vyl~~~WLaMSst~y  313 (423)
T KOG4219|consen  294 KFIQQVYLAIYWLAMSSTCY  313 (423)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            55566667778998888754

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4219|consensus Back     alignment and domain information
>PF13853 7tm_4: Olfactory receptor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3pbl_A481 Structure Of The Human Dopamine D3 Receptor In Comp 9e-27
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-24
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 1e-23
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 1e-23
3d4s_A490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 3e-23
3p0g_A501 Structure Of A Nanobody-Stabilized Active State Of 4e-23
2rh1_A500 High Resolution Crystal Structure Of Human B2-Adren 4e-23
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 5e-23
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 6e-23
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 1e-22
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 1e-22
3pds_A458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 5e-22
3uon_A467 Structure Of The Human M2 Muscarinic Acetylcholine 3e-21
4daj_A479 Structure Of The M3 Muscarinic Acetylcholine Recept 1e-20
3rze_A452 Structure Of The Human Histamine H1 Receptor In Com 1e-18
4eiy_A447 Crystal Structure Of The Chimeric Protein Of A2aar- 2e-11
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 2e-11
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 2e-11
2x72_A349 Crystal Structure Of The Constitutively Active E113 2e-11
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 2e-11
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 3e-11
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 3e-11
4djh_A480 Structure Of The Human Kappa Opioid Receptor In Com 3e-11
3eml_A488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 4e-11
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 9e-11
4dkl_A464 Crystal Structure Of The Mu-Opioid Receptor Bound T 2e-10
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 2e-10
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 2e-10
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 3e-10
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 9e-10
2ks9_A364 Solution Conformation Of Substance P In Water Compl 3e-09
4ej4_A461 Structure Of The Delta Opioid Receptor Bound To Nal 7e-08
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-07
1hll_A32 Nmr Structure Of T3-I2, A 32 Residue Peptide From T 1e-05
3vw7_A484 Crystal Structure Of Human Protease-Activated Recep 2e-05
1hof_A32 Nmr Structure Of T3-I2, A 32 Residue Peptide From T 4e-05
1ho9_A32 Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 6e-04
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure 
Iteration: 1

 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 121/201 (60%), Gaps = 18/201 (8%)
Query: 92  CIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGK-WNFGFMMCNLWVSFD 150
           C+AV   R L+   NYL+VSLAV+DL VA LVMP  +  EV+G  WNF  + C+++V+ D
Sbjct: 60  CMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLD 119
Query: 151 VLSCTASILNLCMISVDRYYAITKPLEY--GVKRTP-KRMILCVVFVWLGAACISLPPLI 207
           V+ CTASI NLC IS+DRY A+  P+ Y  G  ++  +R+ L +  VW+ A  +S P  +
Sbjct: 120 VMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP--L 177
Query: 208 VLGNDYREDNGVSFCSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRA 267
           + G +   D  V  CS+  N  + IY+++ SFY+P  V + VY +I+     +V +++R 
Sbjct: 178 LFGFNTTGDPTV--CSI-SNPDFVIYSSVVSFYLPFGVTVLVYARIY-----VVLKQRRR 229
Query: 268 QSHIIM----EHCYLQIHNNS 284
           ++   M    E   L+I+ ++
Sbjct: 230 KNIFEMLRIDEGLRLKIYKDT 250
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The Alpha- 2a Adrenergic Receptor Length = 32 Back     alignment and structure
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484 Back     alignment and structure
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The Alpha- 2a Adrenergic Receptor Length = 32 Back     alignment and structure
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue Peptide From The Alpha 2a Adrenergic Receptor Length = 32 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 3e-93
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 6e-92
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 3e-91
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 2e-90
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 4e-86
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-85
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 1e-83
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 6e-81
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 6e-63
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 1e-46
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-44
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 4e-44
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 1e-35
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 3e-34
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 6e-34
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
 Score =  290 bits (744), Expect = 3e-93
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 33  SPHNISRFSLTNDTSPASFHNYTRLGLLSHSPYSPLQALIIGLILLIIIIVTIVGNILVC 92
            P N S F L  + S A  H+ T            +  + +G+++ +I++  + GN+LV 
Sbjct: 10  QPGNGSAFLLAPNRSHAPDHDVT-------QQRDEVWVVGMGIVMSLIVLAIVFGNVLVI 62

Query: 93  IAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMCNLWVSFDVL 152
            A+    +L+   NY + SLA +DL + + V+P    + +   W FG   C  W S DVL
Sbjct: 63  TAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 122

Query: 153 SCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGND 212
             TASI  LC+I+VDRY+AIT P +Y    T  +  + ++ VW+ +   S  P+ +    
Sbjct: 123 CVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYR 182

Query: 213 YREDNGVSF------CSVCQNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKR 266
                 ++       C    N  Y I +++ SFY+PL +M+ VY ++F  A++ +     
Sbjct: 183 ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQL---NI 239

Query: 267 AQSHIIMEHCYLQIHNNSSPATNSNRGHTHRTSTTSTNTTGRWKPGGCRKWLRTQDRVQC 326
            +   I E   L+I+ ++        GH    S +             R       + + 
Sbjct: 240 FEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEA 299

Query: 327 KRKNK 331
           ++   
Sbjct: 300 EKLFN 304
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.98
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.98
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 99.98
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.98
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.98
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.98
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.97
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.3
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 97.46
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.07
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 92.61
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 88.23
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 86.08
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 84.44
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.5e-37  Score=327.93  Aligned_cols=200  Identities=25%  Similarity=0.369  Sum_probs=166.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcccch
Q psy929           66 SPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLR---RPCNYLLVSLAVSDLCVAILVMPMALLYEVS--GKWNFGF  140 (483)
Q Consensus        66 ~~~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lr---t~~~ill~nLavaDll~~~~~~p~~i~~~~~--~~~~~~~  140 (483)
                      +....++++++|++++++|++||+++++++.++|++|   +++|+|++|||+||++++++.+|+.+.....  +.|.+|+
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~  107 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD  107 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH
Confidence            4456788899999999999999999999999876544   7889999999999999999999998877653  4799999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCC---
Q psy929          141 MMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDN---  217 (483)
Q Consensus       141 ~~C~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~---  217 (483)
                      .+|++..++..++..+|++++++||+|||+||++|++|+..++++++..+++++|++++++++|+++.++......+   
T Consensus       108 ~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~  187 (510)
T 4grv_A          108 AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTH  187 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999887653322221   


Q ss_pred             -Ccccccccccc----hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy929          218 -GVSFCSVCQNY----GYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEK  265 (483)
Q Consensus       218 -~~~~C~~~~~~----~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~  265 (483)
                       ....|...++.    .|..+.+++.|++|+++|+++|++|++.++++.+...
T Consensus       188 ~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~  240 (510)
T 4grv_A          188 PGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFE  240 (510)
T ss_dssp             GGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHH
T ss_pred             CCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence             22245444332    3555556677999999999999999999998765443
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 7e-21
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.6 bits (226), Expect = 7e-21
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 8/218 (3%)

Query: 66  SPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMP 125
            P Q  ++   + ++I++    N L        +KLR P NY+L++LAV+DL +      
Sbjct: 33  EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 92

Query: 126 MALLYEVSGKWNFGFMMCNLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPK 185
             L   + G + FG   CNL   F  L    ++ +L +++++RY  + KP+    +    
Sbjct: 93  TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGEN 151

Query: 186 RMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCSVCQ-------NYGYQIYATLGS 238
             I+ V F W+ A   + PPL+       E    S             N  + IY  +  
Sbjct: 152 HAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH 211

Query: 239 FYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHC 276
           F IPL V+   Y ++    ++  A+++ + +    E  
Sbjct: 212 FIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKE 249

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.96
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=5e-29  Score=246.27  Aligned_cols=236  Identities=23%  Similarity=0.365  Sum_probs=187.0

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhH
Q psy929           64 PYSPLQALIIGLILLIIIIVTIVGNILVCIAVCIVRKLRRPCNYLLVSLAVSDLCVAILVMPMALLYEVSGKWNFGFMMC  143 (483)
Q Consensus        64 ~~~~~~~~~l~~~~~li~v~gl~gN~lvi~vi~~~~~lrt~~~ill~nLavaDll~~~~~~p~~i~~~~~~~~~~~~~~C  143 (483)
                      ..++....++++++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+.....+.|..+...|
T Consensus        31 ~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c  110 (348)
T d1u19a_          31 LAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGC  110 (348)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhh
Confidence            34455677888999999999999999999999999999999999999999999999999999988888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccceeeccchhhhhhHHHHHHHHHHHHhhHhhhccccccCCCccccc
Q psy929          144 NLWVSFDVLSCTASILNLCMISVDRYYAITKPLEYGVKRTPKRMILCVVFVWLGAACISLPPLIVLGNDYREDNGVSFCS  223 (483)
Q Consensus       144 ~~~~~l~~~~~~~S~~~l~~IsidRy~aI~~P~~y~~~~t~~~~~~~i~~iWl~s~l~~~p~~~~~~~~~~~~~~~~~C~  223 (483)
                      +...++..++..+++++++++++|||++|++|++|+. .++++....++++|.+++++..++.+....... ......|.
T Consensus       111 ~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  188 (348)
T d1u19a_         111 NLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIP-EGMQCSCG  188 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEE-ETTTTEEE
T ss_pred             hhhhhccccceeeecchhhhhhcccceeeeccccccc-cccccccccceeeehhhhheecccccccceecc-CCcccccc
Confidence            9999999999999999999999999999999999875 466677788888899999999888776543222 22222222


Q ss_pred             cc--------ccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHhhhcceeeeeeeccccCCCCCCCCCCCCcc
Q psy929          224 VC--------QNYGYQIYATLGSFYIPLTVMITVYYKIFCAARKIVAEEKRAQSHIIMEHCYLQIHNNSSPATNSNRGHT  295 (483)
Q Consensus       224 ~~--------~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (483)
                      ..        ....+.+...++.+++|+++++++|.+|.+.+||+.++.+                              
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~------------------------------  238 (348)
T d1u19a_         189 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ------------------------------  238 (348)
T ss_dssp             CCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC------------------------------
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc------------------------------
Confidence            11        1123445556666899999999999999887765431100                              


Q ss_pred             ccccccccCCCCccCCCCccccccchhhHHHHhhhhhhhhhhhhhhhhhccccchhhhhhh
Q psy929          296 HRTSTTSTNTTGRWKPGGCRKWLRTQDRVQCKRKNKANKYQEIQESLDLDCTSEYFTRTLE  356 (483)
Q Consensus       296 ~~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~vflicwlP~~i~~l~  356 (483)
                                               ......++++|++|++.+++++|++||+|+.+..+.
T Consensus       239 -------------------------~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~  274 (348)
T d1u19a_         239 -------------------------ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY  274 (348)
T ss_dssp             -------------------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------hhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhhe
Confidence                                     012355567888888888888888999888766654