Psyllid ID: psy930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEccc
Coil and Loop (DISEMBL)
mipksggdyayineafgplPAFLYMWVALFVIMPTGNAVTALTFAQYIlqpiwphcdppysAVRLLAAVITCLLTAINCynkyhltcsv
Flexible Loop (DISEMBL)
mipksggdYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Low Complexity Region (SEG)
MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Disordered region (IsUnstruct)
*******DYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTC**
Disordered Region (DISOPRED)
MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Disordered Region (DISEMBL)
MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Disordered Region (DISPRO)
****SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHLTCSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q92536	515	Y+L amino acid transporte	yes	N/A	0.876	0.151	0.615	1e-21
Q8BGK6	515	Y+L amino acid transporte	yes	N/A	0.876	0.151	0.576	3e-20
A1L3M3	510	Y+L amino acid transporte	N/A	N/A	0.876	0.152	0.564	5e-20
Q28I80	514	Y+L amino acid transporte	yes	N/A	0.876	0.151	0.564	1e-19
Q9Z1K8	510	Y+L amino acid transporte	no	N/A	0.876	0.152	0.576	2e-19
Q9R0S5	512	Y+L amino acid transporte	no	N/A	0.876	0.152	0.576	2e-19
Q59I64	468	Y+L amino acid transporte	no	N/A	0.865	0.164	0.571	2e-19
Q9UM01	511	Y+L amino acid transporte	no	N/A	0.876	0.152	0.564	6e-19
P63116	530	Asc-type amino acid trans	no	N/A	0.865	0.145	0.506	6e-17
P63115	530	Asc-type amino acid trans	no	N/A	0.865	0.145	0.506	6e-17

>sp|Q92536|YLAT2_HUMAN Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 57/78 (73%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI EAFG   AF+ +WV+L V+ PTG A+ A+TFA YI+QP +P CDPPY 
Sbjct: 105 ITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYL 164

Query: 62  AVRLLAAVITCLLTAINC 79
           A RLLAA   CLLT +NC
Sbjct: 165 ACRLLAAACICLLTFVNC 182

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial (RPE) cells.
Homo sapiens (taxid: 9606)

>sp|Q8BGK6|YLAT2_MOUSE Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 56/78 (71%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI EAFG   AF+ +WV+L ++ PT  A+ A+TFA YI++P +P CDPPY 
Sbjct: 105 ITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYIIKPSFPTCDPPYV 164

Query: 62  AVRLLAAVITCLLTAINC 79
           A RLLAA   CLLT +NC
Sbjct: 165 ACRLLAAACVCLLTFVNC 182

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial cells.

Mus musculus (taxid: 10090)

>sp|A1L3M3|YLAT2_XENLA Y+L amino acid transporter 2 OS=Xenopus laevis GN=slc7a6 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 56/78 (71%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C+PPY 
Sbjct: 100 IKKSGASYAYILEAFGGFVAFIRLWTSLLIIEPTSQAVIAITFANYLVQPVFPSCNPPYM 159

Query: 62  AVRLLAAVITCLLTAINC 79
           A RL+AA   CL+T INC
Sbjct: 160 ASRLIAAACVCLITFINC 177

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus laevis (taxid: 8355)

>sp|Q28I80|YLAT2_XENTR Y+L amino acid transporter 2 OS=Xenopus tropicalis GN=slc7a6 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 55/78 (70%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C PPY 
Sbjct: 100 IKKSGASYAYILEAFGDFVAFIRLWTSLLIIEPTSQAVIAITFANYLVQPVFPSCYPPYM 159

Query: 62  AVRLLAAVITCLLTAINC 79
           A RL+AA   CL+T INC
Sbjct: 160 ASRLIAAACVCLITFINC 177

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus tropicalis (taxid: 8364)

>sp|Q9Z1K8|YLAT1_MOUSE Y+L amino acid transporter 1 OS=Mus musculus GN=Slc7a7 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 55/78 (70%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C  PY+
Sbjct: 98  IKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAPYA 157

Query: 62  AVRLLAAVITCLLTAINC 79
           A RLLAA   CLLT INC
Sbjct: 158 AGRLLAAACICLLTFINC 175

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Mus musculus (taxid: 10090)

>sp|Q9R0S5|YLAT1_RAT Y+L amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a7 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 55/78 (70%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C  PY+
Sbjct: 100 IKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAPYA 159

Query: 62  AVRLLAAVITCLLTAINC 79
           A RLLAA   CLLT INC
Sbjct: 160 AGRLLAAACICLLTFINC 177

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Rattus norvegicus (taxid: 10116)

>sp|Q59I64|YLAT2_DANRE Y+L amino acid transporter 2 OS=Danio rerio GN=slc7a6 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 56/77 (72%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI E+FG   AF+ +W +L +I PT  AV A+TFA Y++QP++P C+PPYS
Sbjct: 67  ITKSGASYAYILESFGGFIAFIRLWTSLLIIEPTSQAVIAITFANYLVQPLFPTCEPPYS 126

Query: 62  AVRLLAAVITCLLTAIN 78
           A RL+AA   CLLT IN
Sbjct: 127 ASRLIAAACICLLTFIN 143

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Danio rerio (taxid: 7955)

>sp|Q9UM01|YLAT1_HUMAN Y+L amino acid transporter 1 OS=Homo sapiens GN=SLC7A7 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 55/78 (70%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           I KSG  YAYI EAFG   AF+ +W +L +I PT  A+ A+TFA Y++QP++P C  PY+
Sbjct: 97  IKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAPYA 156

Query: 62  AVRLLAAVITCLLTAINC 79
           A RLLAA   CLLT INC
Sbjct: 157 ASRLLAAACICLLTFINC 174

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes.

Homo sapiens (taxid: 9606)

>sp|P63116|AAA1_RAT Asc-type amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a10 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           IPKSGGDYAY+ E FG L  FL +W A+ ++ PT  AV ++TF+ Y+LQP++P+C PP +
Sbjct: 106 IPKSGGDYAYVTEIFGGLAGFLLLWSAVLIMYPTSLAVISMTFSNYVLQPVFPNCIPPAT 165

Query: 62  AVRLLAAVITCLLTAIN 78
           A R+L+     LLT +N
Sbjct: 166 ASRVLSMACLMLLTWVN 182

Sodium-independent, high affinity transport of small neutral D- and L-amino acids and amino acid-related compounds. May play a role in the modulation of glutamatergic transmission through mobilization of D-serine at the glutamatergic synapse.

Rattus norvegicus (taxid: 10116)

>sp|P63115|AAA1_MOUSE Asc-type amino acid transporter 1 OS=Mus musculus GN=Slc7a10 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           IPKSGGDYAY+ E FG L  FL +W A+ ++ PT  AV ++TF+ Y+LQP++P+C PP +
Sbjct: 106 IPKSGGDYAYVTEIFGGLAGFLLLWSAVLIMYPTSLAVISMTFSNYVLQPVFPNCIPPAT 165

Query: 62  AVRLLAAVITCLLTAIN 78
           A R+L+     LLT +N
Sbjct: 166 ASRVLSMACLMLLTWVN 182

Sodium-independent, high affinity transport of small neutral D- and L-amino acids and amino acid-related compounds. May play a role in the modulation of glutamatergic transmission through mobilization of D-serine at the glutamatergic synapse.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
307205380	496	Large neutral amino acids transporter sm	0.910	0.163	0.864	2e-35
332025781	490	Large neutral amino acids transporter sm	0.910	0.165	0.851	2e-35
307184182	490	Large neutral amino acids transporter sm	0.910	0.165	0.851	4e-35
322779194	401	hypothetical protein SINV_09992 [Solenop	0.910	0.201	0.851	6e-35
380016932	489	PREDICTED: LOW QUALITY PROTEIN: large ne	0.910	0.165	0.851	2e-34
66550796	489	PREDICTED: large neutral amino acids tra	0.910	0.165	0.851	2e-34
350399823	489	PREDICTED: large neutral amino acids tra	0.910	0.165	0.864	3e-34
340712486	489	PREDICTED: large neutral amino acids tra	0.910	0.165	0.864	4e-34
157103807	506	amino acids transporter [Aedes aegypti]	0.910	0.160	0.802	4e-34
156548342	507	PREDICTED: large neutral amino acids tra	0.910	0.159	0.802	8e-34

>gi|307205380|gb|EFN83721.1| Large neutral amino acids transporter small subunit 2 [Harpegnathos saltator]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 79/81 (97%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYI++AFGPLPAFLY+WVALFV++PTGNA+TALTFAQYILQP+WP C PPY
Sbjct: 98  MIPKSGGDYAYISDAFGPLPAFLYLWVALFVLVPTGNAITALTFAQYILQPVWPGCTPPY 157

Query: 61  SAVRLLAAVITCLLTAINCYN 81
           +AVRLLAAV+TCLLTAINCYN
Sbjct: 158 AAVRLLAAVVTCLLTAINCYN 178

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025781|gb|EGI65938.1| Large neutral amino acids transporter small subunit 2 [Acromyrmex echinatior]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 79/81 (97%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYI++AFGPLPAFLY+WVALFV++PTGNA+TALTFAQYILQP+WP C+PPY
Sbjct: 92  MIPKSGGDYAYISDAFGPLPAFLYLWVALFVLVPTGNAITALTFAQYILQPVWPGCEPPY 151

Query: 61  SAVRLLAAVITCLLTAINCYN 81
           +A+RLLAAVITCLLT INCYN
Sbjct: 152 AAIRLLAAVITCLLTVINCYN 172

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184182|gb|EFN70702.1| Large neutral amino acids transporter small subunit 2 [Camponotus floridanus]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 78/81 (96%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIP+SGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP WP C+PPY
Sbjct: 92  MIPRSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPAWPGCEPPY 151

Query: 61  SAVRLLAAVITCLLTAINCYN 81
            AVRLLAAVITCLLTAINCYN
Sbjct: 152 EAVRLLAAVITCLLTAINCYN 172

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779194|gb|EFZ09530.1| hypothetical protein SINV_09992 [Solenopsis invicta]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 78/81 (96%)

Query: 1  MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
          MIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP+WP C+PPY
Sbjct: 4  MIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPVWPGCEPPY 63

Query: 61 SAVRLLAAVITCLLTAINCYN 81
           AVRLLAAVITCLLT INCYN
Sbjct: 64 VAVRLLAAVITCLLTVINCYN 84

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016932|ref|XP_003692421.1| PREDICTED: LOW QUALITY PROTEIN: large neutral amino acids transporter small subunit 2-like [Apis florea]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 78/81 (96%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP+W  C PPY
Sbjct: 91  MIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPVWHGCIPPY 150

Query: 61  SAVRLLAAVITCLLTAINCYN 81
           +AVRLLAAVITCLLTAINCYN
Sbjct: 151 AAVRLLAAVITCLLTAINCYN 171

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66550796|ref|XP_395404.2| PREDICTED: large neutral amino acids transporter small subunit 2-like [Apis mellifera]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 78/81 (96%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TALTFAQYILQP+W  C PPY
Sbjct: 91  MIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITALTFAQYILQPVWHGCIPPY 150

Query: 61  SAVRLLAAVITCLLTAINCYN 81
           +AVRLLAAVITCLLTAINCYN
Sbjct: 151 AAVRLLAAVITCLLTAINCYN 171

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399823|ref|XP_003485650.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus impatiens]

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 78/81 (96%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYIN+AFGPLPAFLY++VALFV++PTGNA+TALTFAQYILQP+W  C PPY
Sbjct: 91  MIPKSGGDYAYINDAFGPLPAFLYLYVALFVLVPTGNAITALTFAQYILQPVWHGCVPPY 150

Query: 61  SAVRLLAAVITCLLTAINCYN 81
           +AVRLLAAVITCLLTAINCYN
Sbjct: 151 AAVRLLAAVITCLLTAINCYN 171

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712486|ref|XP_003394790.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Bombus terrestris]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 78/81 (96%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYIN+AFGPLPAFLY++VALFV++PTGNA+TALTFAQYILQP+W  C PPY
Sbjct: 91  MIPKSGGDYAYINDAFGPLPAFLYLYVALFVLVPTGNAITALTFAQYILQPVWHGCVPPY 150

Query: 61  SAVRLLAAVITCLLTAINCYN 81
           +AVRLLAAVITCLLTAINCYN
Sbjct: 151 AAVRLLAAVITCLLTAINCYN 171

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103807|ref|XP_001648140.1| amino acids transporter [Aedes aegypti] gi|108869341|gb|EAT33566.1| AAEL014161-PA [Aedes aegypti]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 76/81 (93%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYI EAFGPLPAFLY+WVAL +++P GNA+TA+TFAQY+LQP+WP C+PPY
Sbjct: 109 MIPKSGGDYAYIGEAFGPLPAFLYLWVALLILVPAGNAITAITFAQYLLQPLWPTCEPPY 168

Query: 61  SAVRLLAAVITCLLTAINCYN 81
            +VRLLAA+ITCLLTAINCYN
Sbjct: 169 ESVRLLAALITCLLTAINCYN 189

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548342|ref|XP_001603387.1| PREDICTED: large neutral amino acids transporter small subunit 2-like [Nasonia vitripennis]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 77/81 (95%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           MIPKSGGDYAYI++AFGPLPAFLY+WVALF+++PTGNA+TA+TFAQYILQP+W  C+PPY
Sbjct: 109 MIPKSGGDYAYISDAFGPLPAFLYLWVALFILVPTGNAITAITFAQYILQPLWTGCEPPY 168

Query: 61  SAVRLLAAVITCLLTAINCYN 81
            A+RLLAAV+TC LTAINCYN
Sbjct: 169 EAIRLLAAVVTCFLTAINCYN 189

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
FB|FBgn0002778	499	mnd "minidiscs" [Drosophila me	0.910	0.162	0.728	1e-30
UNIPROTKB|E7EPZ8	229	SLC7A6 "Y+L amino acid transpo	0.921	0.358	0.602	1.6e-22
UNIPROTKB|Q92536	515	SLC7A6 "Y+L amino acid transpo	0.921	0.159	0.602	7.8e-22
UNIPROTKB|F1NX29	486	SLC7A7 "Uncharacterized protei	0.898	0.164	0.6	1.4e-21
UNIPROTKB|E9PLV9	289	SLC7A8 "Large neutral amino ac	0.876	0.269	0.576	1.9e-21
UNIPROTKB|F1MDA3	515	SLC7A6 "Uncharacterized protei	0.921	0.159	0.566	9.7e-21
MGI|MGI:1355323	531	Slc7a8 "solute carrier family	0.876	0.146	0.576	1.1e-20
RGD|619904	533	Slc7a8 "solute carrier family	0.876	0.146	0.576	1.1e-20
UNIPROTKB|Q9UHI5	535	SLC7A8 "Large neutral amino ac	0.876	0.145	0.576	1.1e-20
MGI|MGI:2142598	515	Slc7a6 "solute carrier family	0.921	0.159	0.566	1.3e-20

FB|FBgn0002778 mnd "minidiscs" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 1.0e-30, P = 1.0e-30
 Identities = 59/81 (72%), Positives = 69/81 (85%)

Query:     1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
             MIPKSGGDYAYI  AFGPLPAFLY+WVAL +++PTGNA+TALTFA Y+L+P WP CD P 
Sbjct:   102 MIPKSGGDYAYIGTAFGPLPAFLYLWVALLILVPTGNAITALTFAIYLLKPFWPSCDAPI 161

Query:    61 SAVRLLAAVITCLLTAINCYN 81
              AV+LLAA + C+LT INCYN
Sbjct:   162 EAVQLLAAAMICVLTLINCYN 182

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS;TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

UNIPROTKB|E7EPZ8 SLC7A6 "Y+L amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/83 (60%), Positives = 60/83 (72%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             I KSG  YAYI EAFG   AF+ +WV+L V+ PTG A+ A+TFA YI+QP +P CDPPY 
Sbjct:   105 ITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYL 164

Query:    62 AVRLLAAVITCLLTAINC-YNKY 83
             A RLLAA   CLLT +NC Y K+
Sbjct:   165 ACRLLAAACICLLTFVNCAYVKW 187

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q92536 SLC7A6 "Y+L amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 50/83 (60%), Positives = 60/83 (72%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             I KSG  YAYI EAFG   AF+ +WV+L V+ PTG A+ A+TFA YI+QP +P CDPPY 
Sbjct:   105 ITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDPPYL 164

Query:    62 AVRLLAAVITCLLTAINC-YNKY 83
             A RLLAA   CLLT +NC Y K+
Sbjct:   165 ACRLLAAACICLLTFVNCAYVKW 187

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1NX29 SLC7A7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 48/80 (60%), Positives = 57/80 (71%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             I KSG  YAYI EAFG   AF+ +W +L +I PT  AV A+TF  YI+QPI+PHC+PPY 
Sbjct:    79 IVKSGASYAYILEAFGAFVAFIRLWSSLLIIEPTTQAVIAITFGNYIVQPIFPHCEPPYD 138

Query:    62 AVRLLAAVITCLLTAINCYN 81
             AVRL+AA   C LT INC N
Sbjct:   139 AVRLIAAACICSLTFINCVN 158

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PLV9 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 45/78 (57%), Positives = 58/78 (74%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             IPKSGGDY+Y+ + FG L  FL +W+A+ VI PT  AV ALTF+ Y+LQP++P C PP S
Sbjct:   100 IPKSGGDYSYVKDIFGGLAGFLRLWIAVLVIYPTNQAVIALTFSNYVLQPLFPTCFPPES 159

Query:    62 AVRLLAAVITCLLTAINC 79
              +RLLAA+   LLT +NC
Sbjct:   160 GLRLLAAICLLLLTWVNC 177

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MDA3 SLC7A6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 47/83 (56%), Positives = 59/83 (71%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             I KSG  YAYI EAFG   AF+ +W +L ++ PTG A+ A+TFA YI+QP +P C+PPY 
Sbjct:   105 ITKSGASYAYILEAFGGFIAFIRLWASLLIVEPTGQAIIAITFANYIIQPSFPTCEPPYL 164

Query:    62 AVRLLAAVITCLLTAINC-YNKY 83
             A RLLAA   CLLT +NC Y K+
Sbjct:   165 ACRLLAAACMCLLTFVNCAYVKW 187

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

MGI|MGI:1355323 Slc7a8 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8" [Mus musculus (taxid:10090)]

 Score = 251 (93.4 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 45/78 (57%), Positives = 58/78 (74%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             IPKSGGDY+Y+ + FG L  FL +W+A+ VI PT  AV ALTF+ Y+LQP++P C PP S
Sbjct:    99 IPKSGGDYSYVKDIFGGLAGFLRLWIAVLVIYPTNQAVIALTFSNYVLQPLFPTCFPPES 158

Query:    62 AVRLLAAVITCLLTAINC 79
              +RLLAA+   LLT +NC
Sbjct:   159 GLRLLAAICLLLLTWVNC 176

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005275 "amine transmembrane transporter activity" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO;ISA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=ISO;ISA

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISO

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IDA

GO:0015695 "organic cation transport" evidence=ISO

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=ISO

GO:0055085 "transmembrane transport" evidence=ISA

RGD|619904 Slc7a8 "solute carrier family 7 (amino acid transporter light chain, L system), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 45/78 (57%), Positives = 58/78 (74%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             IPKSGGDY+Y+ + FG L  FL +W+A+ VI PT  AV ALTF+ Y+LQP++P C PP S
Sbjct:   101 IPKSGGDYSYVKDIFGGLAGFLRLWIAVLVIYPTNQAVIALTFSNYVLQPLFPTCFPPES 160

Query:    62 AVRLLAAVITCLLTAINC 79
              +RLLAA+   LLT +NC
Sbjct:   161 GLRLLAAICLLLLTWVNC 178

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006865 "amino acid transport" evidence=ISO

GO:0015101 "organic cation transmembrane transporter activity" evidence=IEA;ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISO;ISS

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA;ISO

GO:0015695 "organic cation transport" evidence=ISO

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0015807 "L-amino acid transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA;ISO

GO:0042605 "peptide antigen binding" evidence=ISS

UNIPROTKB|Q9UHI5 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 45/78 (57%), Positives = 58/78 (74%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             IPKSGGDY+Y+ + FG L  FL +W+A+ VI PT  AV ALTF+ Y+LQP++P C PP S
Sbjct:   100 IPKSGGDYSYVKDIFGGLAGFLRLWIAVLVIYPTNQAVIALTFSNYVLQPLFPTCFPPES 159

Query:    62 AVRLLAAVITCLLTAINC 79
              +RLLAA+   LLT +NC
Sbjct:   160 GLRLLAAICLLLLTWVNC 177

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=EXP;ISS;IDA

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0042605 "peptide antigen binding" evidence=ISS

GO:0006865 "amino acid transport" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009636 "response to toxic substance" evidence=NAS

GO:0055065 "metal ion homeostasis" evidence=NAS

GO:0015101 "organic cation transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019534 "toxin transporter activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0015695 "organic cation transport" evidence=IDA

MGI|MGI:2142598 Slc7a6 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 6" [Mus musculus (taxid:10090)]

 Score = 250 (93.1 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 47/83 (56%), Positives = 59/83 (71%)

Query:     2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
             I KSG  YAYI EAFG   AF+ +WV+L ++ PT  A+ A+TFA YI++P +P CDPPY 
Sbjct:   105 ITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYIIKPSFPTCDPPYV 164

Query:    62 AVRLLAAVITCLLTAINC-YNKY 83
             A RLLAA   CLLT +NC Y K+
Sbjct:   165 ACRLLAAACVCLLTFVNCAYVKW 187

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92536	YLAT2_HUMAN	No assigned EC number	0.6153	0.8764	0.1514	yes	N/A
Q28I80	YLAT2_XENTR	No assigned EC number	0.5641	0.8764	0.1517	yes	N/A
Q8BGK6	YLAT2_MOUSE	No assigned EC number	0.5769	0.8764	0.1514	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	89
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	3e-27
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	2e-06
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	1e-04
PRK11357	445	PRK11357, frlA, putative fructoselysine transporte	0.002

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  102 bits (255), Expect = 3e-27
 Identities = 44/80 (55%), Positives = 55/80 (68%)

Query: 2   IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYS 61
           IPKSGG+Y YI E FGPL AFL +W+ L VI P   AV AL FA YIL P++P C+ P  
Sbjct: 104 IPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEW 163

Query: 62  AVRLLAAVITCLLTAINCYN 81
           A+RL+A +   LLT +NC +
Sbjct: 164 AIRLVAVLCVLLLTLVNCLS 183

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
             P++GG Y ++  AFG   AF+  W      +  G A ++   AQY+L   +P      
Sbjct: 57  AFPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYIL-GLASSSSVAAQYLLSAFFPDLVGNT 115

Query: 61  SAVRLLAAVITCLLTAINCY 80
                +A  I  +   IN  
Sbjct: 116 WLTYGIAIAILIIFALINIR 135

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALF--VIMPTGNAVTALTFAQYILQPIWPHCDP 58
            IP +GG YAY   A GP   FL  W+ L   VI     A+ A ++  Y+  P       
Sbjct: 71  AIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLF-PGPGLLSI 129

Query: 59  PYSAVRLLAAVITCLLTAINCY 80
               + L+A  +  LLT +N  
Sbjct: 130 GPLLIILIALALIALLTLLNLR 151

Length = 466

>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 3   PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYI 48
           P++G DY Y+  A     AFL  W + +       ++ AL     +
Sbjct: 71  PENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNL 116

Length = 445

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG1287|consensus	479		99.72
TIGR00911	501	2A0308 L-type amino acid transporter.	99.55
PRK10655	438	potE putrescine transporter; Provisional	99.5
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.49
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.49
PRK10644	445	arginine:agmatin antiporter; Provisional	99.45
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.45
PRK10249	458	phenylalanine transporter; Provisional	99.44
PRK10746	461	putative transport protein YifK; Provisional	99.44
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.43
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.42
PRK11021	410	putative transporter; Provisional	99.41
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.41
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.4
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.4
PRK10238	456	aromatic amino acid transporter; Provisional	99.39
PRK11387	471	S-methylmethionine transporter; Provisional	99.39
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.38
PRK15049	499	L-asparagine permease; Provisional	99.38
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.35
TIGR00930	953	2a30 K-Cl cotransporter.	99.34
PRK10580	457	proY putative proline-specific permease; Provision	99.34
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.33
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.32
TIGR00909	429	2A0306 amino acid transporter.	99.3
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.29
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.29
PRK10836	489	lysine transporter; Provisional	99.26
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.25
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.21
TIGR00913	478	2A0310 amino acid permease (yeast).	99.2
PRK15238	496	inner membrane transporter YjeM; Provisional	99.09
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.0
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.97
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.85
KOG1286|consensus	554		98.67
PHA02764	399	hypothetical protein; Provisional	98.46
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.39
KOG1289|consensus	550		98.16
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	97.93
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.76
KOG2083|consensus	643		96.58
PF03845	320	Spore_permease: Spore germination protein; InterPr	94.84
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	94.26
PRK13629	443	threonine/serine transporter TdcC; Provisional	94.12
KOG1288|consensus	945		91.4
PRK15132	403	tyrosine transporter TyrP; Provisional	90.37
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	88.63
KOG2082|consensus	1075		88.27
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	86.43
PRK10483	414	tryptophan permease; Provisional	82.47
PRK09664	415	tryptophan permease TnaB; Provisional	80.99

>KOG1287|consensus

Probab=99.72  E-value=4.6e-17  Score=112.79  Aligned_cols=88  Identities=57%  Similarity=1.021  Sum_probs=82.1

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||+|.|+.++||+.+||+.+|..++...+.+.|..++.|++|+.++++|.+..|+...++++.+++++++.+|+.
T Consensus        73 ~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~  152 (479)
T KOG1287|consen   73 SIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSF  152 (479)
T ss_pred             cccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Confidence            58999999999999999999999999999888898889999999999777788988888899999999999999999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      ++|.++|+
T Consensus       153 ~V~~a~~v  160 (479)
T KOG1287|consen  153 SVKWATRV  160 (479)
T ss_pred             hhhHHHHH
Confidence            99998874

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.55  E-value=6.4e-14  Score=97.98  Aligned_cols=88  Identities=51%  Similarity=0.904  Sum_probs=73.2

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|+|+++.+||..||+.+|..+....+...+..+..+++|+.+.++|+...+.+...+++++++++++.+|++
T Consensus       103 ~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~  182 (501)
T TIGR00911       103 TIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCL  182 (501)
T ss_pred             hcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999987655566788888999999765445665445555677888889999999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|.++|+
T Consensus       183 Gvk~~~~~  190 (501)
T TIGR00911       183 SVKWATRV  190 (501)
T ss_pred             hhHHHHHH
Confidence            99998874

>PRK10655 potE putrescine transporter; Provisional

Probab=99.50  E-value=2.3e-13  Score=93.72  Aligned_cols=85  Identities=19%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||..||+++|.+|+.+. ......+.++.+|+.. ++|. ..++....++.++++++++.+|++
T Consensus        64 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~-~~~~~~a~~~~~y~~~-~~~~-~~~~~~~~~~~~~~l~~~~~ln~~  140 (438)
T PRK10655         64 FSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLL-IANVAIAISAVGYGTE-LFGA-TLSPVQICLATIGVLWLCTVANFG  140 (438)
T ss_pred             hCCCCCchHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hccc-ccchHHHHHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999988763 3444456777889886 4563 223455566777888999999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|.++|+
T Consensus       141 g~~~~~~i  148 (438)
T PRK10655        141 GARITGQI  148 (438)
T ss_pred             CHHHHHHH
Confidence            99998874

>TIGR00908 2A0305 ethanolamine permease

Probab=99.49  E-value=2.5e-13  Score=93.63  Aligned_cols=81  Identities=26%  Similarity=0.343  Sum_probs=68.7

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||..||+++|.+++.+ ....+.++..+++|+.. ++|+.     ..+..+.+++++++.+|++
T Consensus        66 ~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~-~~p~~-----~~~~~~~~~~~~~~~ln~~  138 (442)
T TIGR00908        66 MIPTAGGGYGFARRAFGPWGGFLAGTAILIEF-AFAPPAIACFIGAYCES-LFPVG-----PGWLAALVFYIVFIGINIL  138 (442)
T ss_pred             HcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhccC-----chhHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999876 56778889999999986 55653     1345677778888999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|.++|+
T Consensus       139 g~~~~~~i  146 (442)
T TIGR00908       139 GVGEAAKL  146 (442)
T ss_pred             HHHHHHhH
Confidence            99998874

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.49  E-value=2.3e-13  Score=93.00  Aligned_cols=87  Identities=26%  Similarity=0.403  Sum_probs=71.8

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||++||+.+|.+++.+ ....+..+..+++|+...+.|+....++....++++++++.+.+|++
T Consensus        57 ~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~  135 (426)
T PF13520_consen   57 AYPSAGGIYVWVSRAFGPFWGFIVGWLYWVAY-ILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLL  135 (426)
T ss_dssp             TTTSSTTHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCeeeehhhhcccccchhcccceeEEEe-eccccccccchhhhhhhccccccccccchheeeeecccccceEeeec
Confidence            47999999999999999999999999999877 55677778889999987543443334556778899999999999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|.++|+
T Consensus       136 g~~~~~~~  143 (426)
T PF13520_consen  136 GIKLSGKI  143 (426)
T ss_dssp             THHHHHHH
T ss_pred             hhhhhhhh
Confidence            99998874

...

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.45  E-value=8.5e-13  Score=91.19  Aligned_cols=85  Identities=19%  Similarity=0.325  Sum_probs=65.5

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||+|.|+++.+||..||+++|.+|+.+.. .....+....+|... ++|... +++...+++++++++++.+|++
T Consensus        66 ~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ln~~  142 (445)
T PRK10644         66 LDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWI-GNIAMVVIGVGYLSY-FFPILK-DPLVLTITCVVVLWIFVLLNIV  142 (445)
T ss_pred             hCCCCCChhHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HhcccC-CcHHHHHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999976533 344445556678775 456432 2344456677888899999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+|+
T Consensus       143 gvk~~~~i  150 (445)
T PRK10644        143 GPKMITRV  150 (445)
T ss_pred             chHHHHHH
Confidence            99998874

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.45  E-value=9.1e-13  Score=90.93  Aligned_cols=84  Identities=19%  Similarity=0.252  Sum_probs=65.7

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|+|++| +||.+||+++|.+|.... ......+.+..+|+.. ++|... ++....+++++++++++.+|++
T Consensus        63 ~~P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~y~~~-~~p~~~-~~~~~~~~~~~i~~~~~~ln~~  138 (435)
T PRK10435         63 KNPQQGGPIAYAGE-ISPAFGFQTGVLYYHANW-IGNLAIGITAVSYLST-FFPVLN-DPIPAGIACIAIVWVFTFVNML  138 (435)
T ss_pred             hCCCCCChhHHHHH-HCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HccccC-ChHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999 899999999999987542 3344556777789886 567543 2344556677888899999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+|+
T Consensus       139 gvk~~~~i  146 (435)
T PRK10435        139 GGTWVSRL  146 (435)
T ss_pred             hHHHHHHH
Confidence            99998764

>PRK10249 phenylalanine transporter; Provisional

Probab=99.44  E-value=1.1e-12  Score=91.13  Aligned_cols=81  Identities=19%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||.+||++||.+|+.+ ....+.+..+.+.|+.. ++|+.     +...++.+++++++.+|++
T Consensus        80 ~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~~~~~~l~~~lN~~  152 (458)
T PRK10249         80 EEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQY-WFPDV-----PTWIWAAAFFIIINAVNLV  152 (458)
T ss_pred             hCCCCCCHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCcC-----cHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999999877 34566777788888886 55642     2345577788889999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|.++|+
T Consensus       153 gv~~~~~i  160 (458)
T PRK10249        153 NVRLYGET  160 (458)
T ss_pred             cchhhhhH
Confidence            99998874

>PRK10746 putative transport protein YifK; Provisional

Probab=99.44  E-value=1e-12  Score=91.44  Aligned_cols=81  Identities=15%  Similarity=0.201  Sum_probs=66.2

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|+|++|.+||..||.+||.+|+.+ ....+.+..+.+.|+.. ++|+.  +   .+....+++++++.+|++
T Consensus        69 ~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~-~~p~~--~---~~~~~~~~~~~~~~lN~~  141 (461)
T PRK10746         69 LEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMW-MAVGISEITAIGVYVQF-WFPEM--A---QWIPALIAVALVALANLA  141 (461)
T ss_pred             hcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-ccCCC--c---hHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999887 44567777888999886 56753  2   345566677888999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+++
T Consensus       142 gv~~~~~~  149 (461)
T PRK10746        142 AVRLYGEI  149 (461)
T ss_pred             hHHHHHHH
Confidence            99998763

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.43  E-value=9.4e-13  Score=91.65  Aligned_cols=86  Identities=23%  Similarity=0.281  Sum_probs=67.3

Q ss_pred             CCCC-CcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCC-CchHHHHHHHHHHHHHHHHHH
Q psy930            1 MIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD-PPYSAVRLLAAVITCLLTAIN   78 (89)
Q Consensus         1 ~~P~-~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~iN   78 (89)
                      ++|+ +||.|+|+++.+||..||+.||.+|+.+ .......+..+.+|+.. ++|... .++....+.+++++++++.+|
T Consensus        67 ~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ln  144 (473)
T TIGR00905        67 KKPELDGGIYAYAREGFGPYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGY-FFPLFGSGNPVPSILGASVLLWVFTFLV  144 (473)
T ss_pred             hCCCCCCChhhhHHhHcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhhhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            4799 9999999999999999999999998765 34455566777778876 456332 123455667788888999999


Q ss_pred             Hhccchhhcc
Q psy930           79 CYNKYHLTCS   88 (89)
Q Consensus        79 ~~gvk~~~~~   88 (89)
                      ++|+|.++|+
T Consensus       145 ~~Gi~~~~~i  154 (473)
T TIGR00905       145 LRGVRQAAFI  154 (473)
T ss_pred             HhCHHHHHHH
Confidence            9999998874

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.42  E-value=1.7e-12  Score=89.97  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|++|.+||..||+.+|.+|+.+ ....+.++.+.+.++.. +.|+     .....++.+++++++.+|++
T Consensus        51 ~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~~~lN~~  123 (446)
T PRK10197         51 ATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW-VLVIPLEANIAAMILHS-WVPG-----IPIWLFSLVITLALTGSNLL  123 (446)
T ss_pred             hCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-cccc-----CcHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999876 45666677777777765 4443     23457788889999999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+++
T Consensus       124 gv~~~~~i  131 (446)
T PRK10197        124 SVKNYGEF  131 (446)
T ss_pred             hhHHHhhh
Confidence            99998764

>PRK11021 putative transporter; Provisional

Probab=99.41  E-value=1.8e-12  Score=88.79  Aligned_cols=83  Identities=22%  Similarity=0.268  Sum_probs=62.9

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||..||+++|.++..+ ....+.......+|+.. .+|..   ......++.+++++++.+|++
T Consensus        58 ~~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~ln~~  132 (410)
T PRK11021         58 HFPHAGGPAHFVGMAFGPRLGRVTGWLFLSVI-PVGLPAALQIAAGFGQA-LFGWS---SWQLLLAELLTLALLWLLNLR  132 (410)
T ss_pred             hCCCCCCHHHhHHHHhCchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HcCCC---CchHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999998754 33334344445567765 45532   233456677788889999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|.++|+
T Consensus       133 Gv~~~~~~  140 (410)
T PRK11021        133 GASSSANL  140 (410)
T ss_pred             hHHHHHHH
Confidence            99999874

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.41  E-value=1.9e-12  Score=89.45  Aligned_cols=84  Identities=18%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||+|.|+++.+||..||+.+|..+....+...+.++..+++|+.. ++|.   ++.....++.+++.+++.+|++
T Consensus        69 ~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~~~~~~~~~~~~~~~ln~~  144 (445)
T PRK11357         69 AYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLLGKFIAAGLIIAFMLLHLR  144 (445)
T ss_pred             hcCCCCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999855433356678889999999876 4453   2234566777788889999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|.++|+
T Consensus       145 gv~~~~~v  152 (445)
T PRK11357        145 SVEGGAAF  152 (445)
T ss_pred             hhhHHHHH
Confidence            99988874

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.40  E-value=3e-12  Score=88.42  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=69.8

Q ss_pred             CCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q psy930            3 PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNK   82 (89)
Q Consensus         3 P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gv   82 (89)
                      |++|+..+|+++.+||++||++||.||+.+ .....++..+.+.|+.. |+|+.     +.++.+++.+.++..+|+.++
T Consensus        74 p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~-WfP~v-----P~Wv~al~~~~l~~~~NL~sV  146 (462)
T COG1113          74 PVSGSFSDYARKYLGPWAGFLTGWTYWFFW-VLVGIAELTAIGIYLQF-WFPDV-----PQWVFALAAVVLLLAVNLISV  146 (462)
T ss_pred             CCCCcHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC-----cHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999988 55677899999999997 78874     477888999999999999999


Q ss_pred             chhhc
Q psy930           83 YHLTC   87 (89)
Q Consensus        83 k~~~~   87 (89)
                      |..+.
T Consensus       147 k~FGE  151 (462)
T COG1113         147 KVFGE  151 (462)
T ss_pred             HHHHH
Confidence            98764

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.40  E-value=3.5e-12  Score=88.26  Aligned_cols=81  Identities=20%  Similarity=0.291  Sum_probs=68.0

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||..||+++|.+|+.+ ....+.++.++++|+.. ++|+.     +.+.++++++++++.+|++
T Consensus        71 ~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~-----~~~~~~~~~~~~~~~~n~~  143 (452)
T TIGR01773        71 ANPDTGSFSTYADDAIGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQY-WFPDI-----PLWLFSLILTIVLTLTNLY  143 (452)
T ss_pred             hcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcC-----cHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999876 45677888889989886 55642     2456778888889999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+|+
T Consensus       144 gv~~~~~~  151 (452)
T TIGR01773       144 SVKSYGEF  151 (452)
T ss_pred             hcchhhHH
Confidence            99988764

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.39  E-value=3.3e-12  Score=88.68  Aligned_cols=81  Identities=20%  Similarity=0.235  Sum_probs=66.4

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|+|+++.+||..||++||.+++.+ ....+.+..++++|+.. ++|+.  +   .+....+++++++.+|++
T Consensus        71 ~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~~--~---~~~~~~i~~~~~~~lN~~  143 (456)
T PRK10238         71 EEPVAGSFSHFAYKYWGSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQF-WYPEI--P---TWVSAAVFFVVINAINLT  143 (456)
T ss_pred             hcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcC--c---HHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999987 45677788889999875 55642  2   334566667789999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+|+
T Consensus       144 gv~~~~~~  151 (456)
T PRK10238        144 NVKVFGEM  151 (456)
T ss_pred             hHHHHHHH
Confidence            99988763

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.39  E-value=3.3e-12  Score=88.93  Aligned_cols=80  Identities=14%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||..||++||.+|+.+ ....+....+.+.|+.. ++|+.  +   .....++++++++.+|++
T Consensus        74 ~~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~p~~--~---~~~~~~~~~~~~~~in~~  146 (471)
T PRK11387         74 AMPETGAFHVYAARYLGPATGYTVAWLYWLTW-TVALGSSLTAAGFCMQY-WFPQV--P---VWPWCLLFCALIFGLNVV  146 (471)
T ss_pred             HcCCCCCHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-ccCcC--c---HHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999876 44556666666666654 45542  2   234445556778999999


Q ss_pred             ccchhhc
Q psy930           81 NKYHLTC   87 (89)
Q Consensus        81 gvk~~~~   87 (89)
                      |+|..+|
T Consensus       147 gvk~~~~  153 (471)
T PRK11387        147 STRFFAE  153 (471)
T ss_pred             hHHHHHH
Confidence            9998875

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.38  E-value=4.5e-12  Score=88.17  Aligned_cols=86  Identities=19%  Similarity=0.243  Sum_probs=64.6

Q ss_pred             CCCCC-cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCC-chHHHHHHHHHHHHHHHHHH
Q psy930            1 MIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDP-PYSAVRLLAAVITCLLTAIN   78 (89)
Q Consensus         1 ~~P~~-GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~iN   78 (89)
                      ++|++ ||.|.|+++.|||..||+.+|.+|+.+.. ....++....+|+.. ++|.... ++.+....+..++++++.+|
T Consensus        61 ~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~~~-~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ln  138 (468)
T TIGR03810        61 KKPELDGGVYSYAKAGFGPFMGFISAWGYWLSAWL-GNVAYATLLFSTLGY-FFPIFGGGNNPPSIIGASVLLWCVHFLV  138 (468)
T ss_pred             hCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hcccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            47986 59999999999999999999999987633 344455566667765 4565422 22344566777888899999


Q ss_pred             Hhccchhhcc
Q psy930           79 CYNKYHLTCS   88 (89)
Q Consensus        79 ~~gvk~~~~~   88 (89)
                      ++|+|.++|+
T Consensus       139 ~~Gv~~~~~i  148 (468)
T TIGR03810       139 LRGVEGAAFI  148 (468)
T ss_pred             HhCHHHHHHH
Confidence            9999988773

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK15049 L-asparagine permease; Provisional

Probab=99.38  E-value=4.6e-12  Score=88.96  Aligned_cols=83  Identities=16%  Similarity=0.173  Sum_probs=62.9

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|+|+++.+||..||++||.+|+.+ ....+....+.+.|... + +....  .+.+.++.+++++++.+|++
T Consensus        87 ~~P~aGg~y~y~~~~~G~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~~-~-~~~~~--~~~~~~~~~~~~l~~~iN~~  161 (499)
T PRK15049         87 HRPSSGSFVSYAREFLGEKAAYVAGWMYFINW-AMTGIVDITAVALYMHY-W-GAFGG--VPQWVFALAALTIVGTMNMI  161 (499)
T ss_pred             hCCCCCCHHHHHHHHhCcHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-h-ccCCC--CcHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999876 33445555566677653 3 32211  22445677788899999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+|+
T Consensus       162 gvk~~~~i  169 (499)
T PRK15049        162 GVKWFAEM  169 (499)
T ss_pred             HHHHHHHH
Confidence            99998874

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.35  E-value=6.8e-12  Score=87.35  Aligned_cols=87  Identities=18%  Similarity=0.117  Sum_probs=57.2

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhhh--hCCCCCCchHHHHHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQ---YILQP--IWPHCDPPYSAVRLLAAVITCLLT   75 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~---y~~~~--~~~~~~~~~~~~~~~a~~~~~~~~   75 (89)
                      ++|++||.|.|++|.+||.+||+.+|.+|+.+ ....+......+.   |....  +.|....+++....++++++++++
T Consensus        57 ~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  135 (474)
T TIGR03813        57 AWPEKGGVFRWVGEAFGARWGFLAIFMLWAQV-TIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLAT  135 (474)
T ss_pred             cCCCCCCceeeHhhhcChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999865 2222221111111   22210  112222233334456777788899


Q ss_pred             HHHHhccchhhcc
Q psy930           76 AINCYNKYHLTCS   88 (89)
Q Consensus        76 ~iN~~gvk~~~~~   88 (89)
                      .+|++|+|.++|+
T Consensus       136 ~in~~gv~~~~~i  148 (474)
T TIGR03813       136 FIALRGVAAFTKV  148 (474)
T ss_pred             HHHhcChHHHHHH
Confidence            9999999998774

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.34  E-value=4.8e-12  Score=94.34  Aligned_cols=85  Identities=20%  Similarity=0.256  Sum_probs=70.6

Q ss_pred             CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCC-----CchHHHHHHHHHHHHHHHH
Q psy930            2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD-----PPYSAVRLLAAVITCLLTA   76 (89)
Q Consensus         2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~   76 (89)
                      +|++||.|.|++|.+||..||..||.+++.. ..+.+.++.++++|+... ++...     .+.....+++.++++++++
T Consensus       139 ~p~aGG~Y~yisralGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~l-f~~~~~~~~~~~~~~~~iia~i~l~ll~~  216 (953)
T TIGR00930       139 VVKGGGAYYLISRSLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDL-LRENGSKIMVDPINDIRIYGTVTVVVLLG  216 (953)
T ss_pred             CCCccHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhhcccccccCccccchHHHHHHHHHHHH
Confidence            6999999999999999999999999999876 678899999999999874 44211     1112246788899999999


Q ss_pred             HHHhccchhhcc
Q psy930           77 INCYNKYHLTCS   88 (89)
Q Consensus        77 iN~~gvk~~~~~   88 (89)
                      +|++|+|.++|+
T Consensus       217 In~~Gvk~~ak~  228 (953)
T TIGR00930       217 ISFAGMEWENKA  228 (953)
T ss_pred             HHHhhHHHHHHH
Confidence            999999999874

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.34  E-value=1.1e-11  Score=85.99  Aligned_cols=80  Identities=19%  Similarity=0.313  Sum_probs=64.0

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||..||++||.+++.+ ....+.++.+++.|... ++|+.  +   .....++++++++.+|++
T Consensus        68 ~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~l~~~ln~~  140 (457)
T PRK10580         68 HNPAASSFSRYAQENLGPLAGYITGWTYCFEI-LIVAIADVTAFGIYMGV-WFPTV--P---HWIWVLSVVLIICAVNLM  140 (457)
T ss_pred             HcCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCC--C---hHHHHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999876 45566677888888876 55642  2   233455667788999999


Q ss_pred             ccchhhc
Q psy930           81 NKYHLTC   87 (89)
Q Consensus        81 gvk~~~~   87 (89)
                      |+|..+|
T Consensus       141 gv~~~~~  147 (457)
T PRK10580        141 SVKVFGE  147 (457)
T ss_pred             cchhHHH
Confidence            9998876

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.33  E-value=1e-11  Score=86.54  Aligned_cols=87  Identities=21%  Similarity=0.296  Sum_probs=64.0

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh-----C---CCCC-C-chHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-----W---PHCD-P-PYSAVRLLAAVI   70 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-----~---~~~~-~-~~~~~~~~a~~~   70 (89)
                      ++|++||.|+|+++.+||..||++||.+++.+ ....+..+.++..++...+     .   |+.. + +.+...+++.++
T Consensus        73 ~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (475)
T TIGR03428        73 RYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ-IVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVL  151 (475)
T ss_pred             hCCCCCCHHHHHHHHcCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHH
Confidence            58999999999999999999999999999876 4455566666665654311     0   1111 0 113456777788


Q ss_pred             HHHHHHHHHhccchhhcc
Q psy930           71 TCLLTAINCYNKYHLTCS   88 (89)
Q Consensus        71 ~~~~~~iN~~gvk~~~~~   88 (89)
                      +++.+.+|++|+|..+|+
T Consensus       152 ~~~~~~in~~g~k~~~~i  169 (475)
T TIGR03428       152 LVLTTVINCIGVEWMSRV  169 (475)
T ss_pred             HHHHHHHHHhhhhHHHHH
Confidence            889999999999998764

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.32  E-value=9.8e-12  Score=88.36  Aligned_cols=87  Identities=20%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhC---CCC-------CCch--HHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIW---PHC-------DPPY--SAVRLLAA   68 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~---~~~-------~~~~--~~~~~~a~   68 (89)
                      ++|++||.|.|+++.+||.+||+.||.+++.+ ....+.++.++++|+...+-   +..       ..+.  .....+++
T Consensus        88 ~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~-~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~  166 (557)
T TIGR00906        88 RVPKAGSAYLYSYVTVGELWAFITGWNLILEY-VIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAV  166 (557)
T ss_pred             hCCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHH
Confidence            58999999999999999999999999999876 56778888899999875321   100       0011  12356677


Q ss_pred             HHHHHHHHHHHhccchhhcc
Q psy930           69 VITCLLTAINCYNKYHLTCS   88 (89)
Q Consensus        69 ~~~~~~~~iN~~gvk~~~~~   88 (89)
                      +++++++.+|++|+|.++|+
T Consensus       167 ~ii~l~~~ln~~Gik~s~~v  186 (557)
T TIGR00906       167 CLILLLAVLLSFGVKESAWV  186 (557)
T ss_pred             HHHHHHHHHHHhchhHHHHH
Confidence            88888999999999999874

>TIGR00909 2A0306 amino acid transporter

Probab=99.30  E-value=1.4e-11  Score=84.50  Aligned_cols=86  Identities=28%  Similarity=0.383  Sum_probs=67.5

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC--CCCchHH---------HHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH--CDPPYSA---------VRLLAAV   69 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--~~~~~~~---------~~~~a~~   69 (89)
                      ++|++||.|+|+++.+||..||+.+|.+++.+ ....+..+..+++|+... ++.  .+.|...         ..+.+++
T Consensus        62 ~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~  139 (429)
T TIGR00909        62 MLPVAGSPYTYAYEAMGELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEF-LPGVGLDLPAVLTAKPGNGGVFNLPALL  139 (429)
T ss_pred             hcCCCCcceeeHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHccccCchhhhcCCcccccccHHHHH
Confidence            47999999999999999999999999999876 567888899999998763 342  1112111         1134677


Q ss_pred             HHHHHHHHHHhccchhhcc
Q psy930           70 ITCLLTAINCYNKYHLTCS   88 (89)
Q Consensus        70 ~~~~~~~iN~~gvk~~~~~   88 (89)
                      ++++++.+|++|+|..+|+
T Consensus       140 ~~~~~~~l~~~g~~~~~~~  158 (429)
T TIGR00909       140 IVLFLTYILYLGAKESGKV  158 (429)
T ss_pred             HHHHHHHHHHhCcHHHHHH
Confidence            8889999999999998875

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.29  E-value=1.9e-11  Score=84.02  Aligned_cols=86  Identities=29%  Similarity=0.408  Sum_probs=71.7

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC---CCCchHHHHHHHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH---CDPPYSAVRLLAAVITCLLTAI   77 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~i   77 (89)
                      .+|++||.|.|+++.+||..||+++|.+++.+ ....+..+..+++++.. ++|.   ...+.+....++.+++++++.+
T Consensus        71 ~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  148 (466)
T COG0531          71 AIPSAGGAYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSY-LFPGPGLLSIGPLLIILIALALIALLTLL  148 (466)
T ss_pred             cCCCCCCeeeehhhhcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCcchhhcCCchHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999876 56778888888888876 4553   2222256778899999999999


Q ss_pred             HHhccchhhcc
Q psy930           78 NCYNKYHLTCS   88 (89)
Q Consensus        78 N~~gvk~~~~~   88 (89)
                      |++|+|.++|.
T Consensus       149 n~~G~~~~~~~  159 (466)
T COG0531         149 NLRGIKASAKI  159 (466)
T ss_pred             HHhhHHHHHHH
Confidence            99999998874

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.29  E-value=1.7e-11  Score=86.25  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=60.1

Q ss_pred             CC-CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy930            2 IP-KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAV--TALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAIN   78 (89)
Q Consensus         2 ~P-~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~--~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN   78 (89)
                      +| ++||.|.|+++.+||++||+.+|.+|+.......+.  ...+...|...  .|+...+++...+..++++++++++|
T Consensus        61 ~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~i~~l~i~~~~t~~n  138 (507)
T TIGR00910        61 DGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK--FPALNEDPIIKFIAALIIFWALAFSQ  138 (507)
T ss_pred             cCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhccCcHHHHHHHHHHHHHHHHHH
Confidence            56 899999999999999999999999887542211121  22333356543  24443344555566777889999999


Q ss_pred             Hhccchhhcc
Q psy930           79 CYNKYHLTCS   88 (89)
Q Consensus        79 ~~gvk~~~~~   88 (89)
                      ++|+|.++|+
T Consensus       139 ~~G~k~~~~i  148 (507)
T TIGR00910       139 FGGTKRTAKI  148 (507)
T ss_pred             HhhhHHHHHH
Confidence            9999998874

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK10836 lysine transporter; Provisional

Probab=99.26  E-value=6.5e-11  Score=82.86  Aligned_cols=81  Identities=15%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|.|+++.+||..||++||.+|+.+ ....+.+..+...++.. ++|+.  +   ....+.+.+.+++.+|++
T Consensus        75 ~~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~~~-~~~~a~~~~a~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~lN~~  147 (489)
T PRK10836         75 YMPVSGSFATYGQNYVEEGFGFALGWNYWYNW-AVTIAVDLVAAQLVMSW-WFPDT--P---GWIWSALFLGVIFLLNYI  147 (489)
T ss_pred             HCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh-cCCCC--c---hHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999865 44455444444444443 45542  2   234455667778899999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+++
T Consensus       148 gv~~~~~~  155 (489)
T PRK10836        148 SVRGFGEA  155 (489)
T ss_pred             cchhhhhh
Confidence            99987763

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.25  E-value=4.4e-11  Score=83.40  Aligned_cols=87  Identities=25%  Similarity=0.296  Sum_probs=65.4

Q ss_pred             CCCCCcchhhhHHHHhC----ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh---CCC--CCCchHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFG----PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI---WPH--CDPPYSAVRLLAAVIT   71 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G----~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~~--~~~~~~~~~~~a~~~~   71 (89)
                      ++|++||+|+|+++.+|    +..||++||.+++.+ ....+..+...++|+...+   .|+  ..++++....+.++++
T Consensus        73 ~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  151 (482)
T TIGR00907        73 AYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQ-VAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIH  151 (482)
T ss_pred             hCCCCccHHHHHHHhcccccccceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHH
Confidence            47999999999999987    577999999998876 5567777888888876421   222  2223344466777788


Q ss_pred             HHHHHHHHhccchhhcc
Q psy930           72 CLLTAINCYNKYHLTCS   88 (89)
Q Consensus        72 ~~~~~iN~~gvk~~~~~   88 (89)
                      ++++.+|++|+|..+|+
T Consensus       152 ~~~~~in~~g~k~~~~~  168 (482)
T TIGR00907       152 LIHALINSLPTKWLPRI  168 (482)
T ss_pred             HHHHHHHHhhHhHHHHH
Confidence            99999999999987653

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.21  E-value=1.6e-10  Score=80.57  Aligned_cols=80  Identities=11%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930            2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN   81 (89)
Q Consensus         2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g   81 (89)
                      .|..|+.|.|+++.+||..||++||.+++.+ ....+.++.+++.|+.. ++|+.  +   .+..+.+++.+++.+|++|
T Consensus        80 ~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~-~~p~~--~---~~~~~~~~~~~~~~iN~~g  152 (469)
T PRK11049         80 NLEYKSFSDFASDLLGPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQF-WFPDL--S---DWVASLAVVLLLLSLNLAT  152 (469)
T ss_pred             cCCCCcHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC--c---HHHHHHHHHHHHHHHHHHh
Confidence            5888999999999999999999999999876 34555667788888886 56653  2   2345566778889999999


Q ss_pred             cchhhcc
Q psy930           82 KYHLTCS   88 (89)
Q Consensus        82 vk~~~~~   88 (89)
                      +|..+|+
T Consensus       153 ~~~~~~i  159 (469)
T PRK11049        153 VKMFGEM  159 (469)
T ss_pred             HHHHHHH
Confidence            9998774

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.20  E-value=2.2e-10  Score=79.74  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=61.0

Q ss_pred             CCCCC-cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy930            1 MIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINC   79 (89)
Q Consensus         1 ~~P~~-GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~   79 (89)
                      ++|++ ||.|.|+++.+||..||++||.+|+.+ ....+.++.+.++|+.. +.|+.  +   ......+++++++++|+
T Consensus        62 ~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~in~  134 (478)
T TIGR00913        62 FYPVVSGSFATYASRFVDPAFGFAVGWNYWLQW-LIVLPLELVTASMTIQY-WTDKV--N---PAVWIAIFYVFIVIINL  134 (478)
T ss_pred             hCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-cCCCC--C---HHHHHHHHHHHHHHHHH
Confidence            47965 567789999999999999999999876 55678888888888875 44432  2   12222345667889999


Q ss_pred             hccchhhcc
Q psy930           80 YNKYHLTCS   88 (89)
Q Consensus        80 ~gvk~~~~~   88 (89)
                      +|+|.++|+
T Consensus       135 ~gv~~~~~~  143 (478)
T TIGR00913       135 FGVKGYGEA  143 (478)
T ss_pred             hcchHHHHH
Confidence            999998764

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.09  E-value=1.2e-09  Score=76.61  Aligned_cols=86  Identities=19%  Similarity=0.235  Sum_probs=53.2

Q ss_pred             CCCC-CcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHH-HH---HH-----HHHHhhhh-CCCCCCchHHHHHHHHH
Q psy930            1 MIPK-SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVT-AL---TF-----AQYILQPI-WPHCDPPYSAVRLLAAV   69 (89)
Q Consensus         1 ~~P~-~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~-a~---~~-----~~y~~~~~-~~~~~~~~~~~~~~a~~   69 (89)
                      ++|+ +||+|+|+++.+||++||+.+|.+|..+. ...+.. +.   ..     +.|..+.+ .++. .++.....+++.
T Consensus        64 ~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~  141 (496)
T PRK15238         64 AFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYI-IWMVSTASKIWIPFSTFIFGKDTTQTWHFLGL-NSTQVVGILAVI  141 (496)
T ss_pred             cCCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCcchhhhhhhhcc-cchHHHHHHHHH
Confidence            4797 89999999999999999999998776542 222111 11   11     11111100 0010 111223355666


Q ss_pred             HHHHHHHHHHhccchhhcc
Q psy930           70 ITCLLTAINCYNKYHLTCS   88 (89)
Q Consensus        70 ~~~~~~~iN~~gvk~~~~~   88 (89)
                      .+.+++.+|++|+|.++|+
T Consensus       142 ~~~~~t~vn~~g~~~~~~i  160 (496)
T PRK15238        142 WMILVTFVASKGINKIAKV  160 (496)
T ss_pred             HHHHHHHHHccchHHHHHH
Confidence            6678999999999998874

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.00  E-value=2e-10  Score=80.03  Aligned_cols=86  Identities=21%  Similarity=0.306  Sum_probs=64.9

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh--CCCCCCchHHHHHHHHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI--WPHCDPPYSAVRLLAAVITCLLTAIN   78 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~iN   78 (89)
                      .+|++||.|.|++|.+||..||..||.+|+.+ ....+.+..+.+.++.. +  +++......+..+++.+.+.+++.+|
T Consensus        55 ~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~l~  132 (478)
T PF00324_consen   55 RFPSAGGFYAYASRGLGPALGFAAGWAYWLSY-IAAIAAEATAAGSFLQF-WGYFPGLPSTWVWGILIAIIFILLITLLN  132 (478)
T ss_pred             hhccccchhhhhhhccCCcCCceeeHHHHHHH-HHHHHhhhhhhhhhhcc-ccccccccccccccchhhhhhhhhhhhhh
Confidence            36999999999999999999999999999876 56677777777766654 3  34322111111145778888899999


Q ss_pred             Hhccchhhcc
Q psy930           79 CYNKYHLTCS   88 (89)
Q Consensus        79 ~~gvk~~~~~   88 (89)
                      ++|+|..+|+
T Consensus       133 ~~gv~~~~~~  142 (478)
T PF00324_consen  133 LFGVRVSGKI  142 (478)
T ss_pred             hhhhhccchH
Confidence            9999998873

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.97  E-value=3.2e-09  Score=72.13  Aligned_cols=86  Identities=9%  Similarity=0.000  Sum_probs=63.5

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|+|.++.+||..+++.+|.+++..+ ...+.+....++++.. +++....++.+....+++++++++.+|.+
T Consensus        54 ~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~-~~~~ay~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~v~~~l~~~  131 (381)
T TIGR00837        54 TYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLY-ILTYAYISGGGSILSR-LIGEYFGFPWSARAIVLIFTVLFGSFVWL  131 (381)
T ss_pred             hCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHH-HHHHhcCCCccHHHHHHHHHHHHHHHHHh
Confidence            368999999999999999999999999887653 3455566666777765 33421111223455667778888999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+|+
T Consensus       132 G~~~~~~v  139 (381)
T TIGR00837       132 STSAVDRI  139 (381)
T ss_pred             chhHHHHH
Confidence            99988774

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.85  E-value=2.9e-08  Score=70.19  Aligned_cols=81  Identities=15%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      .+|.+|+..+|..|..+|-.||..||.||+.| ....+.+..+.+..+.. |+|+.    .+...+..+...++..+|.+
T Consensus       104 ~~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~w-~v~~~~El~aa~~vi~y-W~p~~----v~~~~w~~iF~~~i~~iN~~  177 (541)
T COG0833         104 FYPVSGSFSTYATRFVDPAFGFALGWNYWLNW-AVTLPLELTAASLVIQY-WFPDT----VPPWIWIAIFLVLIFLLNLF  177 (541)
T ss_pred             hcCCCCchhhhhhhhcCchHHHHHHHHHHHHH-HHHhhHHHHHHHHhhhh-hcCCC----CChHHHHHHHHHHHHHHHHh
Confidence            37988999999999999999999999999988 67899999999988886 66653    23556667778888999999


Q ss_pred             ccchhhc
Q psy930           81 NKYHLTC   87 (89)
Q Consensus        81 gvk~~~~   87 (89)
                      |+|..+.
T Consensus       178 ~Vk~fGE  184 (541)
T COG0833         178 GVKGFGE  184 (541)
T ss_pred             cccccce
Confidence            9997653

>KOG1286|consensus

Probab=98.67  E-value=8.1e-08  Score=68.64  Aligned_cols=50  Identities=28%  Similarity=0.336  Sum_probs=45.9

Q ss_pred             CCCCC-cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q psy930            1 MIPKS-GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQP   51 (89)
Q Consensus         1 ~~P~~-GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~   51 (89)
                      ++|++ ||.|.|+++.+||.+||..+|.+++.+ ....+.++.+.+.|+.++
T Consensus        90 ~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w  140 (554)
T KOG1286|consen   90 RFPVSAGSFYTYAYRFVGESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYW  140 (554)
T ss_pred             ecccccccceeeeeeeeCcHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH
Confidence            47994 999999999999999999999999988 678999999999999973

>PHA02764 hypothetical protein; Provisional

Probab=98.46  E-value=1.1e-07  Score=63.85  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=32.2

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAV   39 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~   39 (89)
                      ++|++||+|.|.+|++||..|++.||..|..+ +...++
T Consensus        72 AmPrAGGdYVYISRAFGP~~GFLvG~a~WLtl-~~G~Pa  109 (399)
T PHA02764         72 KFPLNGGDYAYIRTAFSSKFYTIFGISLWLTY-VLSQPI  109 (399)
T ss_pred             hCCCCCceEEEhHHhhCccHHHHHHHHHHHHH-Hhhcch
Confidence            48999999999999999999999999988765 444443

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.39  E-value=4.2e-06  Score=56.53  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930            2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN   81 (89)
Q Consensus         2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g   81 (89)
                      +|++ +.+.|.++.+||..|++.+|.++.. .....+.....+++++.....|+     .+...+++..++++..+|..|
T Consensus        61 ~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-----tp~~~~~l~~l~~~~~~~~~G  133 (359)
T TIGR00912        61 FPEK-NFSEILSKYLGKILGRLLSILFILY-FFLIAAYLIRIFADFIKTYLLPR-----TPIIVIIILIIIVSIYIVRKG  133 (359)
T ss_pred             CCCC-CHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHcc
Confidence            6876 6999999999999999999998753 35556667777787776533443     234566777788888999999


Q ss_pred             cchhhcc
Q psy930           82 KYHLTCS   88 (89)
Q Consensus        82 vk~~~~~   88 (89)
                      +|..+|+
T Consensus       134 i~~i~r~  140 (359)
T TIGR00912       134 IEVLLRT  140 (359)
T ss_pred             HHHHHHH
Confidence            9998875

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1289|consensus

Probab=98.16  E-value=6.9e-06  Score=58.44  Aligned_cols=87  Identities=23%  Similarity=0.346  Sum_probs=66.8

Q ss_pred             CCCCCcchhhhHHH----HhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh---hCCCCCCchHHHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINE----AFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQP---IWPHCDPPYSAVRLLAAVITCL   73 (89)
Q Consensus         1 ~~P~~GG~y~y~~~----~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~---~~~~~~~~~~~~~~~a~~~~~~   73 (89)
                      .+|.+||.|-|+..    .+||..++++||...+++ .+..++...+.++.+...   .-|+.+..++.+..+..+++.+
T Consensus       109 a~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~-~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v  187 (550)
T KOG1289|consen  109 AMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQ-ATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFV  187 (550)
T ss_pred             hCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHH
Confidence            48999999999987    466778899999887765 567777788888766543   2355555556677888899999


Q ss_pred             HHHHHHhccchhhcc
Q psy930           74 LTAINCYNKYHLTCS   88 (89)
Q Consensus        74 ~~~iN~~gvk~~~~~   88 (89)
                      ..++|+...|.-.|+
T Consensus       188 ~~lln~~p~r~l~~I  202 (550)
T KOG1289|consen  188 HGLLNSLPTRVLARI  202 (550)
T ss_pred             HHHHhcCCcHHHHHH
Confidence            999999998876653

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=97.93  E-value=0.00012  Score=50.47  Aligned_cols=83  Identities=12%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTG----NAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTA   76 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~----~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   76 (89)
                      +.|++||.|.+.++.+||..|++.+|...+..-|..    .+..+.-++   ..+++|... +.....+..++...+...
T Consensus        49 av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~---i~p~~~~~~-~~~~l~i~siiff~i~~~  124 (378)
T TIGR00796        49 ALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLFAIPRTATVSFEMG---IAPLLHSPT-SLLALFIFSLIFFAVVLL  124 (378)
T ss_pred             eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH---HHhccCccc-chHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999876554544    333333333   234555421 122333455555666666


Q ss_pred             HHHhccchhhc
Q psy930           77 INCYNKYHLTC   87 (89)
Q Consensus        77 iN~~gvk~~~~   87 (89)
                      +|+++.|...+
T Consensus       125 l~~~~~k~~~~  135 (378)
T TIGR00796       125 LSLNPSKLIDR  135 (378)
T ss_pred             HHcCcccHHHH
Confidence            89999887655

transmembrane helical spanners.

>TIGR00814 stp serine transporter

Probab=97.76  E-value=0.00029  Score=48.87  Aligned_cols=82  Identities=15%  Similarity=0.083  Sum_probs=55.6

Q ss_pred             CcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC-CCCchHHHHHHHHHHHHHHHHHHHhccc
Q psy930            5 SGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH-CDPPYSAVRLLAAVITCLLTAINCYNKY   83 (89)
Q Consensus         5 ~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~iN~~gvk   83 (89)
                      +.+...++++.|||..|.+.++.|++... ....+++....+.+.+. .+. ...+.....+.++.+++.+..++..|.|
T Consensus        65 ~~~i~~~~~~~fGk~~G~ii~~lY~~~~~-~i~~aY~~~~~~~~~~f-l~~~~~~~~p~~~i~~lilv~il~~iv~~G~~  142 (397)
T TIGR00814        65 CEDITEVVEEHFGKNWGILITLLYFFAIY-PILLIYSVAITNDSASF-LVNQLGTAPPLRGLLSLALILILVAIMSFGEK  142 (397)
T ss_pred             CCCHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHH
Confidence            67899999999999999999999987653 34455554544444331 111 1011122345677777788899999999


Q ss_pred             hhhcc
Q psy930           84 HLTCS   88 (89)
Q Consensus        84 ~~~~~   88 (89)
                      ...|.
T Consensus       143 ~i~r~  147 (397)
T TIGR00814       143 LLFKI  147 (397)
T ss_pred             HHHHH
Confidence            88774

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>KOG2083|consensus

Probab=96.58  E-value=0.0026  Score=46.17  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=64.3

Q ss_pred             CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccc
Q psy930            4 KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKY   83 (89)
Q Consensus         4 ~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk   83 (89)
                      ++||.|--+.|.+|+..|.-.|-+|.+.. ....+.....|++-+..++ ...  ......-++.+.+.++..+|..|+|
T Consensus        93 k~Gg~yflis~slg~efggsigiIy~f~~-aVa~am~~vgfaEsv~~l~-~~~--s~~~i~gi~~vt~~ill~i~~ag~~  168 (643)
T KOG2083|consen   93 KSGGVYFLISRSLGPEFGGSIGIIYAFAN-AVATAMYVVGFAESVAHLF-ETE--SKEMIDGIGSVTVLILLAINVAGVE  168 (643)
T ss_pred             ccCcEEEEEEecccccccchhHHHHHHHH-HHHHHHhhhhHHHHHHHHH-Hhc--cHHHhcchhHHHHHHHHHhhhccch
Confidence            68999999999999999999998888865 6788999999999888753 332  2233444777888888999999999


Q ss_pred             hhhc
Q psy930           84 HLTC   87 (89)
Q Consensus        84 ~~~~   87 (89)
                      +..|
T Consensus       169 w~~k  172 (643)
T KOG2083|consen  169 WEAK  172 (643)
T ss_pred             hHHH
Confidence            8776

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=94.84  E-value=0.73  Score=30.83  Aligned_cols=76  Identities=8%  Similarity=0.061  Sum_probs=54.9

Q ss_pred             cchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccchh
Q psy930            6 GGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYHL   85 (89)
Q Consensus         6 GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk~~   85 (89)
                      -....+.++.+||..|.+.+..+.+-. ....+.....+++.+.....|+     .+...+...++.........|.+.-
T Consensus        62 ~~l~~~~~~~~Gk~lg~ii~~~~~l~~-l~~~~~~lr~~~~~i~~~~lp~-----TP~~~i~~~~ll~~~y~a~~G~e~i  135 (320)
T PF03845_consen   62 KTLVEISEKLFGKWLGKIINLLYILYF-LLISALVLREFSEFIKTYLLPE-----TPIWVIILLFLLVAAYAARKGIEVI  135 (320)
T ss_pred             CCHHHHHHHHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            456789999999999998888776533 5566777777777776644554     2355666666777777778888877


Q ss_pred             hc
Q psy930           86 TC   87 (89)
Q Consensus        86 ~~   87 (89)
                      +|
T Consensus       136 ~R  137 (320)
T PF03845_consen  136 AR  137 (320)
T ss_pred             HH
Confidence            76

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=94.26  E-value=0.34  Score=33.75  Aligned_cols=84  Identities=8%  Similarity=-0.015  Sum_probs=48.7

Q ss_pred             CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930            2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN   81 (89)
Q Consensus         2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g   81 (89)
                      .|+..+.-..++|.+||..+.+.+..+.+..+. .+.++....++.+.+. ++.....+...+........++..+-..|
T Consensus        61 ~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~-ll~AYisg~g~~~~~~-l~~~~~~~~~~~~~~~~f~~i~~~iv~~g  138 (394)
T PF03222_consen   61 TPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYA-LLVAYISGGGSILSSL-LGNQLGTDLSPWLSSLLFTIIFGGIVYFG  138 (394)
T ss_pred             CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHccHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHhh
Confidence            355666778889999999999998888766543 4455666666666553 23211111223333444444444455566


Q ss_pred             cchhhc
Q psy930           82 KYHLTC   87 (89)
Q Consensus        82 vk~~~~   87 (89)
                      .|...|
T Consensus       139 ~~~v~~  144 (394)
T PF03222_consen  139 TKAVDR  144 (394)
T ss_pred             HHHHHH
Confidence            665444

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=94.12  E-value=0.7  Score=32.93  Aligned_cols=84  Identities=14%  Similarity=0.137  Sum_probs=52.8

Q ss_pred             CCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q psy930            3 PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNK   82 (89)
Q Consensus         3 P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gv   82 (89)
                      |+..+.-+-+++.+|+.++.+.+..|.+..++. +.++.....+.+.+.+......++.+..+.+++++.++..+-..|.
T Consensus        79 ~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~l-l~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~  157 (443)
T PRK13629         79 NPSGNITETVEEHFGKTGGVVITFLYFFAICPL-LWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK  157 (443)
T ss_pred             CCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH
Confidence            334456677899999999999999988776554 4445555555554311000111112355677777777777877887


Q ss_pred             chhhc
Q psy930           83 YHLTC   87 (89)
Q Consensus        83 k~~~~   87 (89)
                      |...|
T Consensus       158 ~~v~k  162 (443)
T PRK13629        158 DLMVK  162 (443)
T ss_pred             HHHHH
Confidence            76655

>KOG1288|consensus

Probab=91.40  E-value=0.13  Score=38.74  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCC------C----CCCchHHHHHHHHHHHHH
Q psy930            4 KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWP------H----CDPPYSAVRLLAAVITCL   73 (89)
Q Consensus         4 ~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~------~----~~~~~~~~~~~a~~~~~~   73 (89)
                      +.||.|-.+.|.+||-.|.-.|-++.+.. ...++..+..+.+-+..- ++      .    ++..++|..+-+..++.+
T Consensus       130 ~GGGaYymISRsLGpEfGGSIGllFf~an-V~~~am~isG~vE~il~n-fG~~a~g~sg~~~lP~g~ww~fly~t~vl~l  207 (945)
T KOG1288|consen  130 RGGGAYYMISRSLGPEFGGSIGLLFFVAN-VFNCAMNISGFVEPILDN-FGKEAQGASGSQFLPDGYWWRFLYTTLVLAL  207 (945)
T ss_pred             ecCceEEEEEcccCcccCCeeeehhhHHH-HhcchhhhhhhhHHHHHh-cCccccCCcccccCCCCcchhhHHHHHHHHH
Confidence            56899999999999998888887766554 678888888888866542 22      1    122456777778888888


Q ss_pred             HHHHHHhccchhhcc
Q psy930           74 LTAINCYNKYHLTCS   88 (89)
Q Consensus        74 ~~~iN~~gvk~~~~~   88 (89)
                      +..+.+.|....+|.
T Consensus       208 ~~~vc~lGsalfAka  222 (945)
T KOG1288|consen  208 CLIVCLLGSALFAKA  222 (945)
T ss_pred             HHHHHHhhHHHHHhh
Confidence            888888888877775

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=90.37  E-value=1.9  Score=30.29  Aligned_cols=45  Identities=13%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             CCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy930            3 PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYI   48 (89)
Q Consensus         3 P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~   48 (89)
                      |+.-+.-+-+++.+||..+.+....+.+..++ .+.++...-++-+
T Consensus        62 ~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~-ll~AYisg~g~il  106 (403)
T PRK15132         62 PADTGLGTLAKRYLGRYGQWLTGFSMMFLMYA-LTAAYISGAGELL  106 (403)
T ss_pred             CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHhCcHHHH
Confidence            44556778899999999999988888776544 4555666644443

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=88.63  E-value=4.3  Score=28.55  Aligned_cols=84  Identities=7%  Similarity=0.048  Sum_probs=51.7

Q ss_pred             CCCCc-chhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCC-CCCchHHHHHHHHHHHHHHHHHHH
Q psy930            2 IPKSG-GDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPH-CDPPYSAVRLLAAVITCLLTAINC   79 (89)
Q Consensus         2 ~P~~G-G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~iN~   79 (89)
                      .|+.. +..+=+++.+||.++.+.+-.+.+..+. ...++....++-+.+ +++. ...++....+..+++...+..+-.
T Consensus        67 ~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~-~~~aY~~~~g~~l~~-~~~~~~~~~~~~r~~~~lif~~~~~~l~~  144 (415)
T COG0814          67 SPNGKASITSLVEDYLGKKGGILIGLSYFFALYG-LLVAYIVGIGNLLAS-FLGNQFGLNPLPRKLGSLIFALVLAFLSW  144 (415)
T ss_pred             CCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHH-HHHHHHhcchhHHHH-HHHhhcccCCcchHHHHHHHHHHHHHHHH
Confidence            35553 7888899999999999999888776543 455566666666655 2332 111113344555555555555666


Q ss_pred             hccchhhc
Q psy930           80 YNKYHLTC   87 (89)
Q Consensus        80 ~gvk~~~~   87 (89)
                      .|.+..-|
T Consensus       145 ~~~~~~lk  152 (415)
T COG0814         145 LGTLAVLK  152 (415)
T ss_pred             hchhHHHH
Confidence            66555443

>KOG2082|consensus

Probab=88.27  E-value=0.25  Score=37.61  Aligned_cols=83  Identities=18%  Similarity=0.210  Sum_probs=55.6

Q ss_pred             CCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCC------C------chHHHHHHHHHHH
Q psy930            4 KSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCD------P------PYSAVRLLAAVIT   71 (89)
Q Consensus         4 ~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~------~------~~~~~~~~a~~~~   71 (89)
                      .+||.|-...|.+||-.|-.+|-++.++. ..+.|.+.+...+.+....+|...      .      -....+.-+.+++
T Consensus       177 paGGsYfmISRsLGPEFGgAVGlcFYLgt-T~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~L  255 (1075)
T KOG2082|consen  177 PAGGSYFMISRSLGPEFGGAVGLCFYLGT-TVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFL  255 (1075)
T ss_pred             cCCCeeEEEecccCccccceeeehhhhhh-HHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHH
Confidence            47999999999999999988887766654 556666777766655432344210      0      0112345567777


Q ss_pred             HHHHHHHHhccchhhc
Q psy930           72 CLLTAINCYNKYHLTC   87 (89)
Q Consensus        72 ~~~~~iN~~gvk~~~~   87 (89)
                      ++..++-..|+|..-|
T Consensus       256 i~m~lIVf~GVK~Vnk  271 (1075)
T KOG2082|consen  256 ILMALIVFVGVKFVNK  271 (1075)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7888888888886544

>TIGR00835 agcS amino acid carrier protein

Probab=86.43  E-value=8.5  Score=27.42  Aligned_cols=75  Identities=24%  Similarity=0.274  Sum_probs=40.4

Q ss_pred             cchhhhHHHHhC-ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhccch
Q psy930            6 GGDYAYINEAFG-PLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYNKYH   84 (89)
Q Consensus         6 GG~y~y~~~~~G-~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~gvk~   84 (89)
                      ||+-.|.++.++ |+.|.+..-. .+.++......++...++-+.+.+ +   .|   .+..++++..+...+-.-|+|.
T Consensus       116 GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~-~---~~---~~v~~i~l~~l~~~vi~GGik~  187 (425)
T TIGR00835       116 GGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF-N---VP---KLVTGIVLTVLTALIIFGGLKR  187 (425)
T ss_pred             cChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc-C---Cc---HHHHHHHHHHHHHHHHhcCchH
Confidence            566688888876 5666665544 222323334556666666665322 2   12   3444444444444444447776


Q ss_pred             hhcc
Q psy930           85 LTCS   88 (89)
Q Consensus        85 ~~~~   88 (89)
                      -+|+
T Consensus       188 Ia~v  191 (425)
T TIGR00835       188 IAKI  191 (425)
T ss_pred             HHHH
Confidence            6654

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK10483 tryptophan permease; Provisional

Probab=82.47  E-value=13  Score=26.45  Aligned_cols=83  Identities=6%  Similarity=-0.062  Sum_probs=46.9

Q ss_pred             CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930            2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN   81 (89)
Q Consensus         2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g   81 (89)
                      +|+.-+.-..+++.+||.+..+.+..+.+..+ ..+.++...-++.+.+. +++... +.+.+.-+++...++..+-+.|
T Consensus        69 ~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y-~Ll~AYisg~g~il~~~-l~~~~~-~i~~~~~~llF~~~~~~iv~~g  145 (414)
T PRK10483         69 YRIGSSFDTITKDLLGKGWNVVNGISIAFVLY-ILTYAYISASGSILHHT-FAEMSL-NVPARAAGFGFALLVAFVVWLS  145 (414)
T ss_pred             CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHHHH-HHhcCC-CCcHHHHHHHHHHHHHHHHHhh
Confidence            35556677889999999866555544544333 34445555566666553 332111 1123445555566666666667


Q ss_pred             cchhhc
Q psy930           82 KYHLTC   87 (89)
Q Consensus        82 vk~~~~   87 (89)
                      .|...|
T Consensus       146 t~~vd~  151 (414)
T PRK10483        146 TKAVSR  151 (414)
T ss_pred             hhHHHH
Confidence            765554

>PRK09664 tryptophan permease TnaB; Provisional

Probab=80.99  E-value=17  Score=25.82  Aligned_cols=84  Identities=7%  Similarity=-0.022  Sum_probs=45.7

Q ss_pred             CCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy930            2 IPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCYN   81 (89)
Q Consensus         2 ~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~g   81 (89)
                      +|+.-+.-+.+++.+||..-.+.+..+.+..+ ....++...-++.+.+. +++...-+.+.+..+++..+++..+-+.|
T Consensus        67 ~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y-~Ll~AYisggG~il~~~-l~~~~~~~i~~~~~~llF~~~~~~~v~~g  144 (415)
T PRK09664         67 YPVGSSFNTITKDLIGNTWNIISGITVAFVLY-ILTYAYISANGAIISET-ISMNLGYHANPRIVGICTAIFVASVLWIS  144 (415)
T ss_pred             CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHH-HhhhccCCCcHHHHHHHHHHHHHHHHHhc
Confidence            45666677889999999765555554444333 34455555666666553 23210001123334455556666666666


Q ss_pred             cchhhc
Q psy930           82 KYHLTC   87 (89)
Q Consensus        82 vk~~~~   87 (89)
                      .|...|
T Consensus       145 t~~vd~  150 (415)
T PRK09664        145 SLAASR  150 (415)
T ss_pred             hhHHHH
Confidence            665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	4e-08
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	1e-06
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	6e-04

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 1   MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPY 60
           + P  GG YAY    FGP   +       ++    GN    +    Y L   +P    P+
Sbjct: 66  LDPSPGGSYAYARRCFGPFLGYQTNV-LYWLACWIGNIAMVVIGVGY-LSYFFPILKDPW 123

Query: 61  SAVRLLAAVITCLLTAINC 79
               +   V+  +   +N 
Sbjct: 124 VLT-ITCVVVLWIFVLLNI 141

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 1   MIPKSGGDYAYINEAFGP-LPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPP 59
            I  + G  A+I++A G  +         L++      A+ A  FA Y L  I  +    
Sbjct: 65  KIVSNAGPIAFIHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLI--NAPIN 121

Query: 60  YSAVRLLAAVITCLLTAINCY 80
              + +    I    TA+N +
Sbjct: 122 TFNIAITEIGIVAFFTALNFF 142

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 3   PKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-WPHCDPPYS 61
            + GG +A+++   GP   F  +    ++ +  G           +   + WP  +    
Sbjct: 70  WEEGGVFAWVSNTLGPRWGFAAISF-GYLQIAIGFIPMLYFVLGALSYILKWPALNEDPI 128

Query: 62  AVRLLAAVITCLLTAINC 79
              + A +I   L     
Sbjct: 129 TKTIAALIILWALALTQF 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.43
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.42
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.31

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.43  E-value=3.5e-13  Score=91.12  Aligned_cols=85  Identities=19%  Similarity=0.312  Sum_probs=72.0

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINCY   80 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~~   80 (89)
                      ++|++||.|+|+++.+||..||+.+|.+++.+ ....+.++..+++|+.. ++|+.. ++++..+++++++++++.+|++
T Consensus        66 ~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~in~~  142 (445)
T 3l1l_A           66 LDPSPGGSYAYARRCFGPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSY-FFPILK-DPWVLTITCVVVLWIFVLLNIV  142 (445)
T ss_dssp             HCCCTTTHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT-TCGGGG-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCchhhHHhHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HCcccc-ccHHHHHHHHHHHHHHHHHHHh
Confidence            37999999999999999999999999999876 45677788899999986 567543 3456778899999999999999


Q ss_pred             ccchhhcc
Q psy930           81 NKYHLTCS   88 (89)
Q Consensus        81 gvk~~~~~   88 (89)
                      |+|..+|+
T Consensus       143 g~~~~~~~  150 (445)
T 3l1l_A          143 GPKMITRV  150 (445)
T ss_dssp             CHHHHHHH
T ss_pred             chHHHHHH
Confidence            99998874

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.42  E-value=4.9e-13  Score=91.82  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=66.7

Q ss_pred             CCCCCcchhhhHHHHhCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh-CCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLPAFLYMWVALFVIMPTGNAVTALTFAQYILQPI-WPHCDPPYSAVRLLAAVITCLLTAINC   79 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~iN~   79 (89)
                      ++| +||.|.|+++.+||.+||+.+|.+|+.+ ....+......++++...+ .|+...+++...+++++++++++.+|+
T Consensus        69 ~~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~  146 (511)
T 4djk_A           69 GWE-EGGVFAWVSNTLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQF  146 (511)
T ss_dssp             CC----CHHHHHHHHHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CCChhhhHHhhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHH
Confidence            479 9999999999999999999999999876 4556666777777776522 455544556677889999999999999


Q ss_pred             hccchhhcc
Q psy930           80 YNKYHLTCS   88 (89)
Q Consensus        80 ~gvk~~~~~   88 (89)
                      +|+|..+|+
T Consensus       147 ~g~~~~~~~  155 (511)
T 4djk_A          147 GGTKYTARI  155 (511)
T ss_dssp             TCSSSHHHH
T ss_pred             hChHHHHHH
Confidence            999998874

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.31  E-value=2.6e-11  Score=82.00  Aligned_cols=85  Identities=19%  Similarity=0.168  Sum_probs=69.7

Q ss_pred             CCCCCcchhhhHHHHhCChH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy930            1 MIPKSGGDYAYINEAFGPLP-AFLYMWVALFVIMPTGNAVTALTFAQYILQPIWPHCDPPYSAVRLLAAVITCLLTAINC   79 (89)
Q Consensus         1 ~~P~~GG~y~y~~~~~G~~~-gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~a~~~~~~~~~iN~   79 (89)
                      ++|++||.|.|+++.+||.+ +...+|.+|+.+ ....+.++.++++|+.. ++|.. .++++..+++.+++++++.+|+
T Consensus        65 ~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~in~  141 (444)
T 3gia_A           65 KIVSNAGPIAFIHKAIGDNIITGALSILLWMSY-VISIALFAKGFAGYFLP-LINAP-INTFNIAITEIGIVAFFTALNF  141 (444)
T ss_dssp             TCCCTTTHHHHHHHHHCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HTTCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCcHHHhHHHHhCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhCCC-CchHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999963 445589988876 56788899999999987 45653 3445667888999999999999


Q ss_pred             hccchhhcc
Q psy930           80 YNKYHLTCS   88 (89)
Q Consensus        80 ~gvk~~~~~   88 (89)
                      +|+|..+|+
T Consensus       142 ~g~~~~~~~  150 (444)
T 3gia_A          142 FGSKAVGRA  150 (444)
T ss_dssp             HTHHHHHHH
T ss_pred             HhHHHHHHH
Confidence            999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00